Psyllid ID: psy16863

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070-----
Protein Sequence
MGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALIVKDPSLSTIQEEGTSEIYDTPMASIEEREISFSFDGKEVSVSLYETPDLTEEEAIKVVEMYADELSEHISDKNMIELPPLRFTKESSRSQNIQMEAVVIDVDHKGTTEDDDLRTDAGLDEISEDLMLHHQ
Secondary Structure (PSIPRED)
ccccccEEEEEEccEEEEcccEEEEEEccccccccEEEEEEEEEccEEEEEEEEEEEEEEEEEEcccccEEEEEEccEEcccccEEEEEEccEEEEEEccccccccEEEEEEEEcccEEEEEEEEEEEEEccccccEEEEEcccEEEEccccEEEEEEEEccccEEEEEEccccccEEEEEccccccccccEEEEEcccEEEEEEccccccccEEEEEEEEcccEEEEEEEEEEEEEccccccEEEEccccEEEEcccEEEEEEEEEccccEEEEEcccccEEEEEEEccEEEcccccEEEEEEccEEEEEEccccccccEEEEEEEEcccccEEEEEEEEEEEccccccEEEEEcccEEEEccccEEEEEEEEcccccEEEEEEccEEccccccEEEEEcccEEEEEEccccccccEEEEEEEEEccEEEEEEEEEEEEccccccccEEEcccEEEEEcccEEEEEEEEEcccccEEEEEEccEEcccccEEEEEEccccccccEEEEEEEEEccEEEEEEEEEEEEEEcccccccccccccccccccccEEEEEccEEEEEccccEEEEEEEEEcccccEEEEEEccEEEEccccEEEEEccccEEEEEEccccccccEEEEEEEEEccEEEEEEEEEEEEEcccccccccEEccccEEEEcccEEEEEEEEEEEcccEEEEEEccEEcccccEEEEccccccEEEEEEEEEccEEEEEEEEEEEEEccccccHHHHHHHHcccccccEEEccccEEEEEcccEEEEEEEEcccccEEEEEEccEEccccccEEEEEEEccEEEEEEccccccccEEEEEEEEcccEEEEEEEEEEEEcccccccccccccccEEEEcccEEEEEEEEEcccccEEEEEEccEEEccccEEEEEEccccEEEEEEEEEEEEEccEEEEEEEEEEEEEcccccHHcccccEEEEEEcccccEEEEcccEEEEEEEEccccccEEEEEEccEEEEEEEEEccccccccEEEEEEEEcccEEEEEEEEEEEEccccEEEEccccEEEEEEEEEEEcccccEEEcccEEcccccccEEccccEEEEc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEccEEEccccEEEEEEEccccccccEEEEEEEEccccEEEEEEEEEEcccccccccccEEEEEEccEEcccccEEEEEcccEEEEEEEEccccccEEEEEEEEEccccccEEEEEEEEEccccccccccccccEEEEcccEEEEEEEEccccccEEEEccccccEEEEEEccEEcccccEEEEEEcccEEEEEEEEccccccEEEEEEEEEcccccccEEEEEEEccccccccccccccccEEccccEEEEEEEccccEEEEEEEEcccccEEEEEEccEEEcccccEEEEEEccEEEEEEEcccccccEEEEEEEEEcccccccEEEEEEEEccccccccccccccEEEEcccEEEEEEEEccccccEEEEEEccEEEccccEEEEEEcccEEEEEEEccccccccEEEEEEEEcccccEEEEEEEEEccccccccccccccccEEEcccEEEEEEEEEcccccEEEEEEccEEEccccEEEEEEEEccccccEEEEEEEEEccccccEEEEEEEEEccccccccccccccccccccccccccccccEEEEcccEEEEEEEEccccccEEEEEEEccEEEcccccEEEEEccccEEEEEEEcccccccEEEEEEEEEcccccccccEEEEEEccccccccccccccEEEEEcccEEEEEEEcccccccEEEEEEccEEcccccEEEEEEcccccEEEEEEEEcccccEEEEEEEEEccccccccccccEEEEcccccccccccccEEEEcccEEEEEEEEccccccEEEEEEccEEEcccccEEEEEccccEEEEEEEEccccccEEEEEEEEEcccccccEEEEEEEcccccccccccccccEEEEcccEEEEEEEEccccccEEEEEEccEEEcccccEEEEEEEccccccEEEEEEEEEcccccccEEEEEEEcccccccccccccccEEEccccccEEEEcccEEEEEEEEccccccEEEEEEccEEEEEcccccccEcccEEEEEEcccccccccccccEEEEccccEEEEEccccccccccEEEEEEEEcccccEEEEEEcccccEEEEEccccccc
Coil and Loop (DISEMBL)
mgiptpqliwykdnkkikagdifaltanpkdpsslgtytceavncmgaafstSRVIARGqqsfldnddvpfnraqgdhpifgnrfrainrdgrtelnirrvrrddggrysvtasnesgystaKFELsvesqvpdapaFIRRLHDIAVKVGTRARLLveirspteikcqfdlnntipfsfraqgdhpifgnrfrainrdgrtelnirrvrrddggrysvtasnesgystaKFELsvesqvpdapaFIRRLHDIAVKVGTRARLLveirspteikcqfdlnntipfsfraqgdhpifgnrfrainrdgrtelnirrvrrddggrysvtasnesgystaKFELsvesqvpdapaFIRRLHDIAVKVGTRARLLVEirspteikihWYRNDRKLEENKIYRTQHDGNFYFIDlssvslfdsgrwtclaenavgrshcscelsvlvpkaykapffTKELEAILTEQgtvsleckvmgiptpqliwykdnkkikagdifaltanpkdpsslgtytceavncmgaafstSRVIARGqqsfldnddvpfnslmppgpapifIKEVENVKAKigtsailecqvlvppwprsiywynkegvveasdkyhimadglggySIEINYleavddgewkcvatsssgvkqFSAAYVHVlmpknyrkprfVESLKavmtddglvsfeckvvgfptptlqwfkdneelkpgdvyqltgtsslgSYCCVAknvmgkaesstqLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQvsispepkvswfrddqqvveSDNVKILKETLGVCHLKIHALEVADQAEWkciatndfgqsitscflklnvpkhykkpKFLEELKAVLSeggavnleckvigvpqptlkwfkdgrelkagdihkiisgedgtcclgiytceahncmgttsssaallgfedkSQIEKAEEGKKalivkdpslstiqeegtseiydtpmasieereisfsfdgkevsvslyetpdlteEEAIKVVEMYADELSEhisdknmielpplrftkessrsqnIQMEAVVIDvdhkgttedddlrtdaGLDEISEDLMLHHQ
Flexible Loop (DISEMBL)
mgiptpqliwykdnKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPfnraqgdhpifgnrfrainrdgrtelnirrvrrddggrysvtasnesgystakfELSVESQVPDAPAFIRRLHDIAVKVGTRARllveirspteikcqfDLNNTIPFsfraqgdhpifgnrfrainrdgrtelnirrvrrddggrysvtasnesgystakfELSVESQVPDAPAFIRRLHDIAVKVGTRARllveirspteikcqfDLNNTIPFsfraqgdhpifgnrfrainrdgrtelnirrvrrddggrysvtasnesgystakfELSVESQVPDAPAFIRRLHDIAVKvgtrarllveirspteikihwyrndrklEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPtptlqwfkdneelkPGDVYQLTGTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQvsispepkvswfrddqQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKSQIEKAEegkkalivkdpslstiqeegtseiydtpmASIEEREISFSFDGKEVSVSLyetpdlteeEAIKVVEMYADELSehisdknmielPPLRFTkessrsqnIQMEAVVidvdhkgttedddlrtdAGLDEISedlmlhhq
Low Complexity Region (SEG)
MGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALIVKDPSLSTIQEEGTSEIYDTPMASIEEREISFSFDGKEVSVSLYETPDLTEEEAIKVVEMYADELSEHISDKNMIELPPLRFTKESSRSQNIQMEAVVIDVDHKGTTEDDDLRTDAGLDEISEDLMLHHQ
Disordered region (IsUnstruct)
******QLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNI*********************************VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRR*******************************VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRR*******************************VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGSYCCVAKNVMGKAE**TQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTS***ALL**************************************************FSFDGKEVSVSLYETPDLTEEEAIKVVEMYADE********************************VVI*******************************
Disordered Region (DISOPRED)
MGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR********VGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG**********AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD**********INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD*AVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKA**************TEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSF************PPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYR************TDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVY*LTGTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLS**DK*LLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKK**********LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFED*************************EEGTSEIYDTPMASIEEREISFSFDGKEVSVSLY****LTEEEAIKVVEMYADELSEHISDKNMIEL*******************VVIDVDHKGTT***********************
Disordered Region (DISEMBL)
MGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALIVKDPSLSTIQEEGTSEIYDTPMASIEEREISFSFDGKEVSVSLYETPDLTEEEAIKVVEMYADELSEHISDKNMIELPPLRFTKESSRSQNIQMEAVVIDVDHKGTTEDDDLRTDAGLDEISEDLMLHHQ
Disordered Region (DISPRO)
MGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQS********FNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALIVKDPSLSTIQEEGTSEIYDTPMASIEEREISFSFDGKEVSVSLYETPDLTEEEAIKVVEMYADELSEHISDKNMIELPPLRFTKESSRSQNIQMEAVVIDVDHKGTTEDDDLRTDAGLDEISEDLM****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALIVKDPSLSTIQEEGTSEIYDTPMASIEEREISFSFDGKEVSVSLYETPDLTEEEAIKVVEMYADELSEHISDKNMIELPPLRFTKESSRSQNIQMEAVVIDVDHKGTTEDDDLRTDAGLDEISEDLMLHHQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1075	2.2.26 [Sep-21-2011]
O01761	8081	Muscle M-line assembly pr	no	N/A	0.743	0.098	0.269	6e-67
A2ASS6	35213	Titin OS=Mus musculus GN=	no	N/A	0.714	0.021	0.249	3e-56
Q8WZ42	34350	Titin OS=Homo sapiens GN=	no	N/A	0.792	0.024	0.240	2e-54
Q96RW7	5635	Hemicentin-1 OS=Homo sapi	no	N/A	0.769	0.146	0.241	5e-50
Q8NDA2	5065	Hemicentin-2 OS=Homo sapi	no	N/A	0.705	0.149	0.235	1e-47
A2AJ76	5100	Hemicentin-2 OS=Mus muscu	no	N/A	0.774	0.163	0.233	4e-42
Q9I7U4	18141	Titin OS=Drosophila melan	no	N/A	0.482	0.028	0.234	3e-35
A2AAJ9	8891	Obscurin OS=Mus musculus	no	N/A	0.685	0.082	0.243	6e-34
Q96MS0	1386	Roundabout homolog 3 OS=H	no	N/A	0.399	0.309	0.257	6e-29
O89026	1612	Roundabout homolog 1 OS=M	no	N/A	0.435	0.290	0.247	5e-28

>sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 OS=Caenorhabditis elegans GN=unc-89 PE=1 SV=3

 Score =  256 bits (655), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 250/928 (26%), Positives = 390/928 (42%), Gaps = 129/928 (13%)

Query: 91   DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ--VPDAPAFIRRLHDIAVK 148
            DG   L IR  ++ D G+Y VTA NE+G +T+  +++V  Q   P  P F+  L   A  
Sbjct: 5124 DGTATLRIRSAKKSDIGQYRVTAKNEAGSATSDCKVTVTEQGEQPSKPKFVIPLKTGAAL 5183

Query: 149  VGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRV 208
             G +    V++R   +   Q+ LN  IP  F    D  I  +       DG   L IR V
Sbjct: 5184 PGDKKEFNVKVRGLPKPTLQWFLNG-IPIKF----DDRITLDDMA----DGNYCLTIRDV 5234

Query: 209  RRDDGGRYSVTASNESGYSTAKFELSVESQVPDA--------PAFIRRLHDIAVKVGTRA 260
            R +D G     A NE+G      E    +   D         P F   L D  + VG   
Sbjct: 5235 REEDFGTLKCIAKNENGTDETVCEFQQGAGHDDGSRDDLRYPPRFNVPLWDRRIPVG--- 5291

Query: 261  RLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINR-DGRTELNIRRVRRDD 319
                    P  I+C  D N T    +   G            N  DG   + I      D
Sbjct: 5292 -------DPMFIECHVDANPTAEVEWFKDGKKIEHTAHTEIRNTVDGACRIKIIPFEESD 5344

Query: 320  GGRYSVTASNESGY--STAKFELSVESQVPD------APAFIRRLHDIAVKVGTRARLLV 371
             G Y   A NE G   + A +++ +   V +      AP     L D  V  G   RL  
Sbjct: 5345 IGVYMCVAVNELGQAETQATYQVEILEHVEEEKRREYAPKINPPLEDKTVNGGQPIRLSC 5404

Query: 372  EIRSPTEIKIHWYRNDRKLEENKIYRTQH--DGNFYFIDLSSVSLFDSGRWTCLAENAVG 429
            ++ +     + WY++   L  +     Q+  DG      ++  +  D G + C+A NA G
Sbjct: 5405 KVDAIPRASVVWYKDGLPLRADSRTSIQYEEDGTATLA-INDSTEEDIGAYRCVATNAHG 5463

Query: 430  RSHCSCELSVLVPKAY-----KAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKD 483
              + SC ++V VPK       + PFFTK L  +  ++G + +L+C V G P P++ WY++
Sbjct: 5464 TINTSCSVNVKVPKQEVKKEGEEPFFTKGLVDLWADRGDSFTLKCAVTGDPFPEIKWYRN 5523

Query: 484  NKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTSRVIARGQQSF 533
             + ++ G    +  +P    SL          G Y CEA N  G A   ++  A  Q + 
Sbjct: 5524 GQLLRNGPRTVIETSPDGSCSLTVNESTMSDEGIYRCEAENAHGKA--KTQATAHVQMAL 5581

Query: 534  LDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVE 593
               +       M  G  P FI E+ ++   +G    LEC+V   P P S+ W    G + 
Sbjct: 5582 GKTE----KPKMDEGKPPKFILELSDMSVSLGNVIDLECKVTGLPNP-SVKWSKDGGPLI 5636

Query: 594  ASDKYHIMADGLGG-YSIEINYLEAVDDGEWKCVATSSSG---VKQF-------SAAYVH 642
               ++    +   G Y + I      D+G ++CVAT+ +G    K F        +  V 
Sbjct: 5637 EDSRFEWSNEASKGVYQLRIKNATVHDEGTYRCVATNENGSATTKSFVRMDDGLGSGVVT 5696

Query: 643  VLMPKNYRKPRFVESLKAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT- 700
               P     PRF   +  V T +G  +  ECKV   P P + W+KD   + P D  Q++ 
Sbjct: 5697 ASQP-----PRFTLKMGDVRTTEGQPLKLECKVDASPLPEMVWYKDGAIVTPSDRIQISL 5751

Query: 701  ---GTSSL----------GSYCCVAKNVMGKAESSTQLTIEDI-----RNHLSEEDKLLL 742
               G ++L          G Y  +A N  G A+     T++ +         ++ D   +
Sbjct: 5752 SPDGVATLLIPSCVYDDDGIYRVIATNPSGTAQDKGTATVKKLPRDSGARRSADRD---V 5808

Query: 743  LTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETL 802
               NKAPK +E L++ +    + F+   + S  P+P + WF+D ++V     +++++   
Sbjct: 5809 FDANKAPKLMEPLENIRIPEKQSFRLRCKFSGDPKPTIKWFKDGERVFPYGRLQLIESPD 5868

Query: 803  GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLE----ELKAV- 857
            GVC L + +    D   ++C+A N +G + TSC   +NV +  +KP+ ++    E KA  
Sbjct: 5869 GVCELVVDSATRQDAGGYRCVAENTYGSARTSC--DVNVIRGDRKPRDIDSSIREGKAPG 5926

Query: 858  ---------LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL--- 905
                        G +V  EC   G P P++KW KDG EL + +  K+ +  DGT  L   
Sbjct: 5927 FTTPLTIRRAKPGDSVTFECLPFGNPFPSIKWLKDGLELFSDEKIKMEAAADGTQRLILS 5986

Query: 906  -------GIYTCEAHNCMGTTSSSAALL 926
                   G + C A N  GT S+ A L+
Sbjct: 5987 DVTFLSEGYFRCVATNEHGTASTKAELV 6014

Structural component of the muscle M-line. Myofilament lattice assembly begins with positional cues laid down in the basement membrane and muscle cell membrane. UNC-89 responds to these signals, localizes, and then participates in assembling an M-line.
Caenorhabditis elegans (taxid: 6239)

>sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1

 Score =  221 bits (563), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 222/891 (24%), Positives = 373/891 (41%), Gaps = 123/891 (13%)

Query: 84   RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 143
            +F+ +       L I  V+ +D G Y   ASN+SG +    +L+V  +   AP   RR+ 
Sbjct: 4294 KFKCLKEQNAYTLVIEAVKTEDEGEYVCEASNDSGKAKTSAKLTVGERA--APVIKRRIE 4351

Query: 144  DIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTEL 203
             + V +G  A+   EI+    ++ Q+         F+A G      ++    + +  + L
Sbjct: 4352 PLEVALGHLAKFTCEIQGAPNVRFQW---------FKA-GREIYESDKCSIRSSNYVSSL 4401

Query: 204  NIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLL 263
             I R +  D G Y+  ASNE G  +    L+V    P  P F+ R   +   VG  A+ L
Sbjct: 4402 EILRTQVVDCGEYTCKASNEYGSVSCTATLTVTEAYP--PTFLSRPKALTTFVGKAAKFL 4459

Query: 264  VEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRY 323
                      C       I   ++  G         R  + D +  L +  +   D G Y
Sbjct: 4460 ----------CTVSGTPVIEIIWQKDGAALSPSPDCRVTDADNKHSLELSNLTVQDRGIY 4509

Query: 324  SVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHW 383
            S  ASN+ G    + EL++     D P FI+ L  +   +  +  L  ++    ++ I W
Sbjct: 4510 SCKASNKFGADICQAELTII----DKPHFIKELEAVQSAINKKIHLECQVDEDRKVTITW 4565

Query: 384  YRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPK 443
             ++ +KL   K Y+   +     +++    L DSG +TC A N  G S  S  ++V  P 
Sbjct: 4566 SKDGQKLPAGKDYKIYFEDKIASLEIPLAKLKDSGTYTCTASNEAGSSSSSAAVAVREP- 4624

Query: 444  AYKAPFFTKELEA--ILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD---------- 491
                P F K+++   ++    +  L CK+ G P  Q+ W+K+NK++   +          
Sbjct: 4625 ----PSFVKKVDPSYLMLPGESARLHCKLKGSPVIQVTWFKNNKELSESNTVRMSFVNSE 4680

Query: 492  -IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPA 550
             I  +T    D S  GTY+CEA N +G+   ++ V+ +                      
Sbjct: 4681 AILDITDVKVDDS--GTYSCEATNDVGSDSCSTEVVIKE--------------------P 4718

Query: 551  PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSI 610
            P FIK +E      G +A+L+C++     P  + W+  +  + +S KY +       Y +
Sbjct: 4719 PSFIKTLEPADIVRGANALLQCEI-AGTGPFEVNWFKDKKQIRSSKKYRLFTQKTFVY-L 4776

Query: 611  EINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-LVS 669
            EI+   + D G+++CV  +  G  +      H+L       P FV+ +       G  V+
Sbjct: 4777 EISSFNSADVGDYECVVANEVG--KCGCVATHLLK----EPPTFVKKVDDFTALAGQTVT 4830

Query: 670  FECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL-------------GSYCCVAKNVM 716
             +  V G    ++ W K  E +K     +++ ++ +             G Y C+A+N  
Sbjct: 4831 LQAAVRGSEPISVMWMKGQEVIKEDGKIKMSFSNGVAVLTIPDVQISLGGKYTCLAENEA 4890

Query: 717  GKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISP 776
            G   S  +L +++                    K IE  +  Q T  +       VS +P
Sbjct: 4891 GSQTSVGELIVKE------------------PAKIIERAELIQVTAGDPATLEYTVSGTP 4932

Query: 777  EPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCF 836
            E K  W++D + +V S   +I  +   +  LK ++ E+ D  ++    +N+ G S  SC 
Sbjct: 4933 ELKPKWYKDGRPLVASKKYRISFKN-NIAQLKFYSAELHDSGQYTFEISNEVGSS--SCE 4989

Query: 837  LKLNVPKHYKKPKFLEELKAVLS-EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKI 895
                V      P F + L+ V S  GGA  L+CK+ G     + WFKDG+EL A D ++I
Sbjct: 4990 TTFTVLDRDIAPLFTKPLRNVDSVVGGACRLDCKIAGSLPMRVSWFKDGKELTASDRYQI 5049

Query: 896  ISGEDGTCCL----------GIYTCEAHNCMGTTSSSAALLGFEDKSQIEK 936
               E GT  L          G +TC A N +G+  SS AL+  E  S + K
Sbjct: 5050 AFVE-GTASLEISRVDMNDAGNFTCRATNSVGSKDSSGALIVQEPPSFVTK 5099

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4

 Score =  215 bits (547), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 243/1009 (24%), Positives = 385/1009 (38%), Gaps = 157/1009 (15%)

Query: 2    GIPTPQLIWYKDNKKIKAGD---------IFALTANPKDPSSLGTYTCEAVNCMGAAFST 52
            G P   + WYKD K + +           I +L     +    GTYT +  N +G +  T
Sbjct: 6656 GTPELSVEWYKDGKLLTSSQKHKFSFYNKISSLRILSVERQDAGTYTFQVQNNVGKSSCT 6715

Query: 53   S------RVIARGQQSFLDNDDVPFN-------RAQGDHPIF------------GNRFRA 87
            +      R +       L N             +  G  PI             G +++ 
Sbjct: 6716 AVVDVSDRAVPPSFTRRLKNTGGVLGASCILECKVAGSSPISVAWFHEKTKIVSGAKYQT 6775

Query: 88   INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAV 147
               D    L +  +   D G Y+  A+N +G    +  L+V+    + P+F++    + V
Sbjct: 6776 TFSDNVCTLQLNSLDSSDMGNYTCVAANVAGSDECRAVLTVQ----EPPSFVKEPEPLEV 6831

Query: 148  KVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRR 207
              G        IR     K  +         FR   +  + G+R      D   EL +  
Sbjct: 6832 LPGKNVTFTSVIRGTPPFKVNW---------FRGAREL-VKGDRCNIYFEDTVAELELFN 6881

Query: 208  VRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR 267
            +     G Y+   SN +G ++    L V+    +  AF++RL D +V+ G          
Sbjct: 6882 IDISQSGEYTCVVSNNAGQASCTTRLFVK----EPAAFLKRLSDHSVEPGK--------- 6928

Query: 268  SPTEIKCQFDLNNTIPFS--FRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSV 325
                I  +     T+P S  ++  G +     +   +  +    L I    + D G+YS 
Sbjct: 6929 ---SIILESTYTGTLPISVTWKKDGFNITTSEKCNIVTTEKTCILEILNSTKRDAGQYSC 6985

Query: 326  TASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYR 385
               NE+G       +S      + P F+  L  +   VG    L  ++    EI + WY+
Sbjct: 6986 EIENEAGRDVCGALVSTL----EPPYFVTELEPLEAAVGDSVSLQCQVAGTPEITVSWYK 7041

Query: 386  NDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAY 445
             D KL     YRT    N   +  + V++ DSG +TC AEN++G +  S +    + +  
Sbjct: 7042 GDTKLRPTPEYRTYFTNNVATLVFNKVNINDSGEYTCKAENSIGTA--SSKTVFRIQERQ 7099

Query: 446  KAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIK---------AGDIFAL 495
              P F ++L+ I    G  V+L C++ G    Q+ WY+D   ++           ++  L
Sbjct: 7100 LPPSFARQLKDIEQTVGLPVTLTCRLNGSAPIQVCWYRDGVLLRDDENLQTSFVDNVATL 7159

Query: 496  TANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIK 555
                 D S  G Y+C A N +G A S++R+ AR                  P  +P F  
Sbjct: 7160 KILQTDLSHSGQYSCSASNPLGTASSSARLTARE-----------------PKKSPFFDI 7202

Query: 556  EVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYL 615
            +  ++    G SA  EC V     P  I W      +     Y I   G   + + I  +
Sbjct: 7203 KPVSIDVIAGESADFECHV-TGAQPMRITWSKDNKEIRPGGNYTITCVGNTPH-LRILKV 7260

Query: 616  EAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKA--VMTDDGLVSFECK 673
               D G++ C AT+  G K   +A + V  P     P+FV+ L+A  V      +  ECK
Sbjct: 7261 GKGDSGQYTCQATNDVG-KDMCSAQLSVKEP-----PKFVKKLEASKVAKQGESIQLECK 7314

Query: 674  VVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL-------------GSYCCVAKNVMGKAE 720
            + G P   + WF+++ EL     Y ++  +S+             G Y C A N +G A 
Sbjct: 7315 ISGSPEIKVSWFRNDSELHESWKYNMSFINSVALLTINEASAEDSGDYICEAHNGVGDAS 7374

Query: 721  SSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKV 780
             ST LT++                    P F +      A    +     ++S +P  +V
Sbjct: 7375 CSTALTVK------------------APPVFTQKPSPVGALKGSDVILQCEISGTPPFEV 7416

Query: 781  SWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLN 840
             W +D +QV  S   KI  +      L I  LE +D  E+ C ATN+ G    SC +K  
Sbjct: 7417 VWVKDRKQVRNSKKFKITSKHFDTS-LHILNLEASDVGEYHCKATNEVGSDTCSCSVKFK 7475

Query: 841  VPKHYKKPKFLEELKAVLSE-GGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGE 899
             P     P+F+++L    +  G AV L   V G    ++ W KD  E+     +  IS  
Sbjct: 7476 EP-----PRFVKKLSDTSTLIGDAVELRAIVEGFQPISVVWLKDRGEVIRESENTRISFI 7530

Query: 900  DGTCCL----------GIYTCEAHNCMGTTSSSAALLGFEDKSQIEKAE 938
            D    L          G Y C+  N  G    SA L   E    IEK E
Sbjct: 7531 DNIATLQLGSPEASNSGKYICQIKNDAGMRECSAVLTVLEPARIIEKPE 7579

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q96RW7|HMCN1_HUMAN Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2

 Score =  200 bits (508), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 242/1004 (24%), Positives = 394/1004 (39%), Gaps = 177/1004 (17%)

Query: 2    GIPTPQLIWYKDN---------KKIKAGDIFALTANPKDPSSLGTYTCEAVNCMG---AA 49
            GIP P + W+KD          + +  G +  L     + +  G YTC   N  G     
Sbjct: 2412 GIPLPSITWFKDGWPVSLSNSVRILSGGRMLRLMQTTMEDA--GQYTCVVRNAAGEERKI 2469

Query: 50   FSTSRVIAR---GQQSFLD--------------------------NDDVPFNRAQGDHPI 80
            F  S ++     G+ +  D                           D  P    +  H I
Sbjct: 2470 FGLSVLVPPHIVGENTLEDVKVKEKQSVTLTCEVTGNPVPEITWHKDGQPLQEDEAHHII 2529

Query: 81   FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 140
             G RF          L I  V+    GRY+  AS+ +G+ +  F L+V         F+ 
Sbjct: 2530 SGGRF----------LQITNVQVPHTGRYTCLASSPAGHKSRSFSLNV---------FVS 2570

Query: 141  RLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGR 200
                     G    + V + SPT + C+         ++   G  P+  NR   I   GR
Sbjct: 2571 PTIAGVGSDGNPEDVTVILNSPTSLVCEAYSYPPATITWFKDGT-PLESNRNIRILPGGR 2629

Query: 201  TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRA 260
            T L I   + D+ GRYS  A+NE+G     +E+ V       P  I +  D+     +  
Sbjct: 2630 T-LQILNAQEDNAGRYSCVATNEAGEMIKHYEVKVY-----IPPIINK-GDLWGPGLSPK 2682

Query: 261  RLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDG 320
             + +++ +   ++C+     +   S+   G  P+  +    I  +G T L I+  +  D 
Sbjct: 2683 EVKIKVNNTLTLECEAYAIPSASLSWYKDG-QPLKSDDHVNIAANGHT-LQIKEAQISDT 2740

Query: 321  GRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIA-------------VKVGTRA 367
            GRY+  ASN +G     F++++  QVP  P+F ++L +I              V +    
Sbjct: 2741 GRYTCVASNIAGEDELDFDVNI--QVP--PSF-QKLWEIGNMLDTGRNGEAKDVIINNPI 2795

Query: 368  RLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA 427
             L  E  +     + WY++   L  +        G    I  + V   D+GR+TC+A N 
Sbjct: 2796 SLYCETNAAPPPTLTWYKDGHPLTSSDKVLILPGGRVLQIPRAKVE--DAGRYTCVAVNE 2853

Query: 428  VGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKI 487
             G      ++ VLVP   K        E  +    +  +EC   G P P+  W KD + +
Sbjct: 2854 AGEDSLQYDVRVLVPPIIKGANSDLPEEVTVLVNKSALIECLSSGSPAPRNSWQKDGQPL 2913

Query: 488  KAGDIFALTANPK-------DPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVP 540
               D     +N +         + +G Y C A N  G+A          ++ F  N  VP
Sbjct: 2914 LEDDHHKFLSNGRILQILNTQITDIGRYVCVAENTAGSA----------KKYFNLNVHVP 2963

Query: 541  FNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHI 600
             + + P         + EN+   +     L C+V   P P  + W   E  ++ +    I
Sbjct: 2964 PSVIGP---------KSENLTVVVNNFISLTCEVSGFP-PPDLSWLKNEQPIKLNTNTLI 3013

Query: 601  MADGLGGYSIEINYLEAVDDGEWKCVATSSSG--VKQFSAAYVHVLMPKNYRKPRFVESL 658
            +    GG +++I   +  D GE+ C+A + +G   K+FS   + V +P +  K    ESL
Sbjct: 3014 VP---GGRTLQIIRAKVSDGGEYTCIAINQAGESKKKFS---LTVYVPPSI-KDHDSESL 3066

Query: 659  KAVMTDDGL-VSFECKVVGFPTPTLQWFKDN---------EELKPGDVYQL--TGTSSLG 706
              V   +G  VS EC+    P P + W+K+          E L  G +  +     S  G
Sbjct: 3067 SVVNVREGTSVSLECESNAVPPPVITWYKNGRMITESTHVEILADGQMLHIKKAEVSDTG 3126

Query: 707  SYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKS--CQATVNE 764
             Y C A NV G+         +D   HL          N   P  IEG +      T++ 
Sbjct: 3127 QYVCRAINVAGR---------DDKNFHL----------NVYVPPSIEGPEREVIVETISN 3167

Query: 765  EFKFTVQVSISPEPKVSWFRDDQQVVESDN--VKILKETLGVCHLKIHALEVADQAEWKC 822
                T   +  P P ++W ++ +++  SD+  V+IL    G   L+I   + +D   + C
Sbjct: 3168 PVTLTCDATGIPPPTIAWLKNHKRIENSDSLEVRILS---GGSKLQIARSQHSDSGNYTC 3224

Query: 823  IATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFK 882
            IA+N  G++    FL + VP      +   ++  +L E   V L C   G+P P ++W K
Sbjct: 3225 IASNMEGKAQKYYFLSIQVPPSVAGAEIPSDVSVLLGEN--VELVCNANGIPTPLIQWLK 3282

Query: 883  DGRELKAGDIHKIISGEDG---------TCCLGIYTCEAHNCMG 917
            DG+ + +G+  +I    +G         T   G YTC A N  G
Sbjct: 3283 DGKPIASGETERIRVSANGSTLNIYGALTSDTGKYTCVATNPAG 3326

Homo sapiens (taxid: 9606)

>sp|Q8NDA2|HMCN2_HUMAN Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=2

 Score =  192 bits (488), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 215/914 (23%), Positives = 355/914 (38%), Gaps = 156/914 (17%)

Query: 36   GTYTCEAVNCMG-----------------------AAFSTSRVIARGQQSFLDNDDVPFN 72
            G YTC A N  G                       A    + V      S +   DV + 
Sbjct: 1861 GIYTCAATNLAGESKREVALKVLVPPNIEPGPVNKAVLENASVTLECLASGVPPPDVSWF 1920

Query: 73   RAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV 132
            +  G  P+       ++ DGR  L I + +  D G Y   ASN +G +  ++ L V    
Sbjct: 1921 K--GHQPVSSWMGVTVSVDGRV-LRIEQAQLSDAGSYRCVASNVAGSTELRYGLRV---- 1973

Query: 133  PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPI--FGN 190
             + P  I     +   V         + +P  + C      +    +   G+ P+   G 
Sbjct: 1974 -NVPPRITLPPSLPGPV--------LVNTPVRLTCNATGAPSPTLMWLKDGN-PVSPAGT 2023

Query: 191  RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 250
                +   GR  L +   R  D GRYS  A +  G               D    + ++H
Sbjct: 2024 PGLQVFPGGRV-LTLASARASDSGRYSCVAVSAVGE--------------DRQDVVLQVH 2068

Query: 251  DIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTEL 310
                 +G    + V       ++CQ         S+   G  P+       ++ D +  L
Sbjct: 2069 MPPSILGEELNVSVVANESVALECQSHAMPPPVLSWWKDG-RPLEPRPGVHLSAD-KALL 2126

Query: 311  NIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAF-IRRLHDIAVKVGTRARL 369
             + R    D G Y+  A N++G+S   + L+V      AP F +R  H + V+ G    L
Sbjct: 2127 QVDRADVWDAGHYTCEALNQAGHSEKHYNLNVWV----APVFPLRESHTLTVREGHPTSL 2182

Query: 370  LVEIRSPTEIKIHWYRNDRKL--EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA 427
              E R     KI W ++ + L  E   +      G   +  L    L   G +TC   N 
Sbjct: 2183 SCECRGVPFPKISWRKDGQPLPGEGAGLQHVSAVGRLLY--LGQAQLAQEGTYTCECSNV 2240

Query: 428  VGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKI 487
            VG S    +L V VP     P      +  + + G  +LEC   G P P + W +D + +
Sbjct: 2241 VGNSSQDLQLEVHVPPQIAGPR-EPPTQVSVVQDGVATLECNATGKPPPTVTWERDGQPV 2299

Query: 488  KA-------GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVP 540
             A           +L       +  G Y+C A N  G          R ++ F       
Sbjct: 2300 GAELGLQLQNQGQSLHVERAQAAHTGRYSCVAENLAG----------RAERKF------E 2343

Query: 541  FNSLMPPGPAPIFIKEVE---NVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDK 597
             + L+PP      I +++   N+ A + +   L C+ +  P P +I W+  E  V   + 
Sbjct: 2344 LSVLVPPE----LIGDLDPLTNITAALHSPLTLLCEAMGIP-PPAIRWFRGEEPVSPGED 2398

Query: 598  YHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSG--VKQFSAAYVHVLMPKNYRKPRFV 655
             +++A   GG+ +++   +  D G + C+A++ +G   + FS   V VL+P +       
Sbjct: 2399 TYLLA---GGWMLKMTQTQEQDSGLYSCLASNEAGEARRNFS---VEVLVPPSIENEDLE 2452

Query: 656  ESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT-----------GTSS 704
            E +K +  D       C V G P P L WFKD   L  GD + ++             SS
Sbjct: 2453 EVIKVL--DGQTAHLMCNVTGHPQPKLTWFKDGRPLARGDAHHISPDGVLLQVLQANLSS 2510

Query: 705  LGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNE 764
             G Y C+A N +G+     QL++            LL      AP  + G +    + +E
Sbjct: 2511 AGHYSCIAANAVGEKTKHFQLSV------------LL------APTILGGAED---SADE 2549

Query: 765  EFKFTVQVSIS--------PEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVAD 816
            E   TV   IS        P P ++W +D      S N+++L  T G   L+I   +  D
Sbjct: 2550 EVTVTVNNPISLICEALAFPSPNITWMKDGAPFEASRNIQLLPGTHG---LQILNAQKED 2606

Query: 817  QAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEE--LKAVLSE-GGAVNLECKVIGV 873
              ++ C+ TN+ G+++ +  +++ +P    K   L E  +K V ++    + LEC+   V
Sbjct: 2607 AGQYTCVVTNELGEAVKNYHVEVLIPPSISKDDPLGEVGVKEVKTKVNSTLTLECESWAV 2666

Query: 874  PQPTLKWFKDGREL 887
            P PT++W+KDG+ +
Sbjct: 2667 PPPTIRWYKDGQPV 2680

Homo sapiens (taxid: 9606)

>sp|A2AJ76|HMCN2_MOUSE Hemicentin-2 OS=Mus musculus GN=Hmcn2 PE=1 SV=1

 Score =  174 bits (440), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 233/996 (23%), Positives = 386/996 (38%), Gaps = 163/996 (16%)

Query: 2    GIPTPQLIWYKDNKKIKA-------GDIFALTANPKDPSSLGTYTCEAVNCMGAAF---- 50
            G P P + W +D + +             +L       S  G Y+C A N  G A     
Sbjct: 2318 GKPLPVVTWQRDGQPVSVEPGLRLQNQNHSLHVERAQASHAGGYSCVAENTAGRAERRFA 2377

Query: 51   --------------STSRVIARGQQSF---LDNDDVP------FNRAQGDHPIFGNRFRA 87
                          S + V A    SF    +   VP      F   Q   P  G    A
Sbjct: 2378 LSVLAPPHLTGDSDSLTNVTATLHGSFTLLCEAAGVPAPTVQWFQEGQPISPREGTYLLA 2437

Query: 88   INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAV 147
                G   L + + +  D G YS  ASNE+G +   F  SVE  VP +         I V
Sbjct: 2438 ----GGWMLKMTQAQEQDRGLYSCLASNEAGEARRNF--SVEVLVPPSIENEDLEEVIKV 2491

Query: 148  KVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRR 207
              G  A+L          +C    +     ++   G      + +  ++ DG   L I +
Sbjct: 2492 PEGQTAQL----------ECNATGHPPPKVTWFKDGQSLTVEDPYE-MSPDG-AFLWIPQ 2539

Query: 208  VRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR 267
                + G YS  ASN  G  T   +LSV          +  +  +  K      + V I 
Sbjct: 2540 ANLSNAGHYSCIASNAVGEKTKHTQLSV--------LVVPTILGVPEK-NANEEVTVTIN 2590

Query: 268  SPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTA 327
            +P  + C+     +   ++   G  P   ++   +   G   L I   +++D G+Y+   
Sbjct: 2591 NPISLICEALAFPSPNITWMKDGS-PFEASKNIQL-LPGTHGLQILNAQKEDAGQYTCVV 2648

Query: 328  SNESGYSTAKFELSVESQVP-----DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIH 382
            +NE G +T  +   VE  +P     D P     + ++  KV +   L  E  +     I 
Sbjct: 2649 TNELGEATKNYH--VEVLIPPSISKDDPLGEVSVKEVKTKVNSSLTLECECWATPPPSIS 2706

Query: 383  WYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
            WY++ R +  +       +G    I  + VS  DSGR+ C+A N  G       + + VP
Sbjct: 2707 WYKDGRPVTPSHRLSVLGEGRLLQIQPTQVS--DSGRYLCVATNVAGEDDQDFNVLIQVP 2764

Query: 443  KAYK------APF--FTKELEAI--------LTEQGTVSLECKVMGIPTPQLIWYKDNKK 486
              ++      A F     E EA         + E     L C    IP P+L WY++ + 
Sbjct: 2765 PMFQKMGDVDAGFEPLPHEEEAQGRVTEYREIVENNPAYLYCDTNAIPPPELTWYREGQP 2824

Query: 487  IKAGDIFALTANPK-------DPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDV 539
            + A D  ++    +            G Y+C+A N +G             + +L  + +
Sbjct: 2825 LSAADGVSVLQGGRILQLPLVQAEDAGRYSCKAANEVG-------------EDWLHYELL 2871

Query: 540  PFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYH 599
                 + PG     ++EV  V A    S  LEC  L  P P ++ W+     V  S +  
Sbjct: 2872 VLTPPVIPGDTQELVEEV-TVNASSAVS--LECPALGNPAP-AVSWFQNGLPVSPSPRLQ 2927

Query: 600  IMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLK 659
            ++ +G     +++   E  D   + CVA + +G    SA  +  L  K    P+  +   
Sbjct: 2928 VLEEG---QVLKVATAEVADAASYMCVAENQAG----SAEKLFTL--KVQVPPQISDWTT 2978

Query: 660  AVMTD--DGLVSFECKVVGFPTPTLQWFKDNEELKPG-DVYQLTGTSSL----------G 706
            + +T   +  VS  C+V   P P + W+KD + L  G + + L GT +L          G
Sbjct: 2979 SQLTATLNSSVSLPCEVYAHPNPEVTWYKDGQPLSLGQEAFLLPGTHTLRLARAQPADSG 3038

Query: 707  SYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEF 766
            +Y C A N  G+ +   QL +            L+  +  +AP   +  ++ Q    ++ 
Sbjct: 3039 TYLCEALNAAGRDQKMVQLNV------------LVPPSFKQAPGGPQ--EAIQVRAGDKA 3084

Query: 767  KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
              + +    PEP V+WF+D Q +     ++ L+   G   L+I   + +D+  + C  +N
Sbjct: 3085 ILSCETDSLPEPAVTWFKDQQPLALGQRIQGLQ---GGQTLEILDSQASDKGVYSCKVSN 3141

Query: 827  DFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRE 886
              G++I +  L + VP  ++KP+  E +  V   G  + L C V G+P PT+ W KD   
Sbjct: 3142 TAGEAIRTFVLAIQVPPTFEKPER-ETVNQV--AGRTLVLACDVSGIPAPTVTWLKDRLP 3198

Query: 887  LKAGDIHKIISGEDGTCCL--------GIYTCEAHN 914
            +++  +H ++S   G   L        G YTC A N
Sbjct: 3199 VESSVVHGVVS-RGGRLQLSHLQPAQAGTYTCVAEN 3233

Mus musculus (taxid: 10090)

>sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE=1 SV=3

 Score =  151 bits (381), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 144/613 (23%), Positives = 262/613 (42%), Gaps = 94/613 (15%)

Query: 380  KIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG----RSHCSC 435
            +I WY ND  L  ++ Y          + ++ V+  D G +TC A+N  G    R++   
Sbjct: 6566 EIKWYFNDILLFASEKYEITVMEQVAKLKIAKVTPSDVGVYTCEAKNEAGVATSRTNIIL 6625

Query: 436  ELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKI-------- 487
            E    VP  +  P   + +E    E+  V++ C+V G P P++ WY+  +++        
Sbjct: 6626 EKEQGVPPQFTKPLKIEFIEEKQPERLKVTVTCQVTGKPNPEVKWYRGIEEVIPSETVQM 6685

Query: 488  ----KAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNS 543
                K GD+     NP  P+    Y+ +A N  G A   + +++R        D+VP   
Sbjct: 6686 FYDEKTGDVALEVINPT-PNEAVVYSVQAQNQFGRAIGNANILSRV-------DEVPREI 6737

Query: 544  LMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMAD 603
            L  P   P+       V    G +   E +    P P   +  N  G     ++  I+  
Sbjct: 6738 LKAPTVTPL-----SAVVVPTGGTLFFEAKYDGLPRPEVKWMRN--GREIIENEETIIET 6790

Query: 604  GLGGYSIEINYLEAVDDGEWKCVATSSSG-VKQFSAAYVHVLMP-KNYRKPRFVESLKAV 661
                 +I++  +     G+++  A +  G  K   +  V    P +  + PRF++ L+  
Sbjct: 6791 TETTTTIKVVNMTRKRTGKYEVWAKNKVGEAKSSGSVVVSDQKPDEQIKPPRFIQPLEPK 6850

Query: 662  MTDDGLVSF-ECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSS-------------LGS 707
               +  V+  E  V   P  + QWF  NE +K  +  ++   ++             +G 
Sbjct: 6851 YFGEHEVAIIEAIVESEPLSSFQWFVHNEPIKSSNEVRIVSQANKSTLLIENFQSKFVGP 6910

Query: 708  YCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL-KSCQATVNEEF 766
            + C A+NV G   S+   T+  I    +EE         ++P+F+E L +  +    E  
Sbjct: 6911 FTCRAENVGGSVTSTA--TVNLIPQEEAEE--------FESPRFVEELVQPVEVMDGEAL 6960

Query: 767  KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
              T QV+  P PKV W+ + +++ E+    I ++  GVC L+I  +   ++ +++C+ATN
Sbjct: 6961 LLTCQVTGKPTPKVEWYHNAEKITENKETTISQDLQGVCQLQITEVFPENEGQYECVATN 7020

Query: 827  DFGQSITSCFLKLNVPKHY------------------------KKPKFLEEL--KAVLSE 860
              G+S++   +K+   ++                         + PK +++L  K    E
Sbjct: 7021 KIGKSVSKTNVKIQAFEYIPDSEITGLTGSEEDLLDRTLSIDEQAPKIIKKLPEKIEPKE 7080

Query: 861  GGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC----------LGIYTC 910
            G    LE KV+G P+P +KW +D  ++ A + ++I + EDGT            LG  + 
Sbjct: 7081 GEQAKLEVKVVGKPKPKVKWLRDDEQIFASEEYQIENFEDGTSVLVINHVYPDDLGTISF 7140

Query: 911  EAHNCMGTTSSSA 923
            EA+N +G   ++A
Sbjct: 7141 EAYNPLGVAVTTA 7153

Key component in the assembly and functioning of adult and embryonic striated muscles and muscle tendons. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Drosophila melanogaster (taxid: 7227)

>sp|A2AAJ9|OBSCN_MOUSE Obscurin OS=Mus musculus GN=Obscn PE=2 SV=2

 Score =  147 bits (370), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 218/894 (24%), Positives = 366/894 (40%), Gaps = 157/894 (17%)

Query: 82   GNRFRAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 140
            G+R+ ++ +DG   EL IR +  +D G Y+     E   +T    LSV++ +P    FI 
Sbjct: 4083 GDRY-SLRQDGAMCELQIRGLTIEDSGEYTCVCGQEKTSAT----LSVKA-LPSR--FIE 4134

Query: 141  RLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGR 200
             L       GT A L          +CQ  ++ T P  ++   +    G R+ ++ +DG 
Sbjct: 4135 DLRSQEATEGTMATL----------RCQ--MSKTAPVEWKKGSETLRDGGRY-SLRQDGP 4181

Query: 201  T-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTR 259
              EL I  +  +D G YS     E   +T    LS+++ +P  P FI  L       GT 
Sbjct: 4182 VCELQICDLAVEDAGEYSCVCGQEKTSAT----LSIKA-LP--PRFIEDLRSQEATEGTM 4234

Query: 260  ARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDD 319
            A L          +CQ  ++   P  +R   +    G R+         EL I  +  +D
Sbjct: 4235 ATL----------RCQ--MSKAAPVEWRKGSETLGDGGRYSLRQNGAVCELQIHDLAVED 4282

Query: 320  GGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEI 379
             G YS     E   +T    L+V++ +P  P FI  L       GT A L  ++     +
Sbjct: 4283 TGEYSCVCGQEKTSAT----LNVKA-LP--PRFIEDLRSQEATEGTMATLRCQMSKAAPV 4335

Query: 380  KIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
            +  W +    L +   Y  + DG    + +  + + D+G+++C+     G+   S  L+V
Sbjct: 4336 E--WRKGSETLRDGGRYSLRQDGAVCELQIHDLDVEDAGQYSCV----CGQEKTSAVLTV 4389

Query: 440  -LVPKAYKAPFFTKELEAILTEQGT-VSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTA 497
              +P     P FT+ L+     +GT V+L C++    T +  W K  K +  G  ++L  
Sbjct: 4390 DALP-----PKFTEGLKKEEATEGTMVTLRCQMSKEATVE--WRKGAKTLSDGGRYSLRQ 4442

Query: 498  NPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEV 557
            +           CE   C G A   +     G+ S +   +    +L      P FI+++
Sbjct: 4443 D--------GAMCELQIC-GLAVEDA-----GEYSCVCGQEKTSATLSVKALPPRFIEDL 4488

Query: 558  ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEA 617
             + +A  GT A L CQ+        + W      +   D+Y +  DG     ++I  L  
Sbjct: 4489 RSQEATEGTMATLRCQMSKAA---PVEWRKGSETLRDGDRYSLRQDG-AVCELQIRDLAV 4544

Query: 618  VDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-LVSFECKVVG 676
             D GE+ CV     G ++ SA      +P     PRF+E L++    +G + +  C++  
Sbjct: 4545 EDAGEYLCVC----GQEKTSATLSVKALP-----PRFIEDLRSQEATEGTMATLRCQMS- 4594

Query: 677  FPTPTLQWFKDNEELKPGDVYQLTGTSSL-------------GSYCCVAKNVMGKAESST 723
                 ++W K ++ L+ GD Y L    ++             G Y CV     G+ ++S 
Sbjct: 4595 -KAAPVEWRKGSKTLRDGDRYSLRQDGAMCELQICDLAVEDTGDYSCVC----GQEKTSA 4649

Query: 724  QLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWF 783
             L+++ +                  P+FIE L+S +A   E    T++  +S    V W 
Sbjct: 4650 TLSVKAL-----------------PPRFIEDLRSQEA--REGTVATLRCRMSKAAPVEWR 4690

Query: 784  RDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPK 843
            +  + + + D   + +E   +C L+I  L V D  E+ C+     GQ  TS  L +    
Sbjct: 4691 KGSETLKDGDRYSLRQEG-NLCELQIRDLAVEDTEEYSCVC----GQEKTSATLSVKA-- 4743

Query: 844  HYKKPKFLEELKAVLS-EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGT 902
                 KF+E+L++  + E   V L CK+    + ++ W K    L+ G  + +   +DG 
Sbjct: 4744 --LPAKFIEDLRSQEAPESSTVTLRCKL--SKKASVVWKKGSETLRNGARYSLR--QDGA 4797

Query: 903  CC-----------LGIY--TCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKA 943
             C            G Y  TC       T S  A  + F+   Q  +AEEG  A
Sbjct: 4798 VCELEIRDLTVEDTGEYSCTCGQERTSATLSIMAPQVVFQQPLQNLQAEEGSMA 4851

Involved in myofibrillogenesis. Seems to be involved in assembly of myosin into sarcomeric A bands in striated muscle.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q96MS0|ROBO3_HUMAN Roundabout homolog 3 OS=Homo sapiens GN=ROBO3 PE=1 SV=2

 Score =  130 bits (327), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 137/532 (25%), Positives = 228/532 (42%), Gaps = 103/532 (19%)

Query: 448 PFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKI--------------KAGDI 492
           P   ++   +L  +G   +L C+  G P P + WYK+  ++               +G +
Sbjct: 64  PRIVEQPPDLLVSRGEPATLPCRAEGRPRPNIEWYKNGARVATVREDPRAHRLLLPSGAL 123

Query: 493 F------ALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMP 546
           F         A P +    G YTC A N +GAA S +  +   + + L +D         
Sbjct: 124 FFPRIVHGRRARPDE----GVYTCVARNYLGAAASRNASL---EVAVLRDD--------- 167

Query: 547 PGPAPIFIKEVENVKAKIGTSAILECQVLVPP--WPRSIYWYNKEGVVEASDKYHIMADG 604
                 F +   NV   +G  A+LEC   VPP   P     + K+G     ++  I    
Sbjct: 168 ------FRQSPGNVVVAVGEPAVLEC---VPPRGHPEPSVSWRKDGARLKEEEGRIT--- 215

Query: 605 LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL-MPKNYRKPRFVESLKAVMT 663
           + G  + +++    D G + CVA++ +G ++ +AA V VL  P   R+P     +  V+ 
Sbjct: 216 IRGGKLMMSHTLKSDAGMYVCVASNMAGERESAAAEVMVLERPSFLRRP-----VNQVVL 270

Query: 664 DDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCVAK 713
            D  V+F C+V G P P L+W K++ EL P   Y++    SL          G+Y CVA+
Sbjct: 271 ADAPVTFLCEVKGDPPPRLRWRKEDGEL-PTGRYEIRSDHSLWIGHVSAEDEGTYTCVAE 329

Query: 714 NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVS 773
           N +G+AE+S  L++     H+              P+ +   +   A   E   F  +  
Sbjct: 330 NSVGRAEASGSLSV-----HV-------------PPQLVTQPQDQMAAPGESVAFQCETK 371

Query: 774 ISPEPKVSWFRDDQQVVESDNVKILKET--LGVC---HLKIHALEVADQAEWKCIATNDF 828
            +P P + W ++  QV+   + + L+ T    V     L I A++  D   + C A +  
Sbjct: 372 GNPPPAIFWQKEGSQVLLFPS-QSLQPTGRFSVSPRGQLNITAVQRGDAGYYVCQAVSVA 430

Query: 829 GQSITSCFLKLNVPKHYKKPKFLEELKA--VLSEGGAVNLECKVIGVPQPTLKWFKDGRE 886
           G  +    L++        P  + +  A   L  G +V L C+V G PQP+++W KDG+ 
Sbjct: 431 GSILAKALLEIKGASLDGLPPVILQGPANQTLVLGSSVWLPCRVTGNPQPSVRWKKDGQW 490

Query: 887 LKAGDIHKIISGEDGTCC--------LGIYTCEAHNCMGTTSSSAALLGFED 930
           L+ GD  +  +  +GT          +G Y+C A +  G  + S  L   ED
Sbjct: 491 LQ-GDDLQFKTMANGTLYIANVQEMDMGFYSCVAKSSTGEATWSGWLKMRED 541

Thought to be involved during neural development in axonal navigation at the ventral midline of the neural tube. In spinal chord development plays a role in guiding commissural axons probably by preventing premature sensitivity to Slit proteins thus inhibiting Slit signaling through ROBO1 (By similarity). Required for hindbrain axon midline crossing.

Homo sapiens (taxid: 9606)

>sp|O89026|ROBO1_MOUSE Roundabout homolog 1 OS=Mus musculus GN=Robo1 PE=1 SV=1

 Score =  127 bits (319), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 139/562 (24%), Positives = 223/562 (39%), Gaps = 94/562 (16%)

Query: 433 CSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK---- 488
           C C  S L  + +         + I+++    +L CK  G PTP + WYK  ++++    
Sbjct: 15  CLCSGSRLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKD 74

Query: 489 ----------AGDIFAL--TANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDN 536
                     +G +F L      K     G Y C A N +G A S +   A  + + L +
Sbjct: 75  DPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYICVARNYLGEAVSHN---ASLEVAILRD 131

Query: 537 DDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPP--WPRSIYWYNKEGVVEA 594
           D               F +   +V   +G  A++ECQ   PP   P     + K+G    
Sbjct: 132 D---------------FRQNPSDVMVAVGEPAVMECQ---PPRGHPEPTISWKKDGSPLD 173

Query: 595 SDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRF 654
                I    + G  + I Y    D G++ CV T+  G ++   A + VL      +P F
Sbjct: 174 DKDERIT---IRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVL-----ERPSF 225

Query: 655 VE--SLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL------- 705
           V+  S  AV  DD    F+C+  G P PT++W KD+ EL P   Y++    +L       
Sbjct: 226 VKRPSNLAVTVDDS-AEFKCEARGDPVPTVRWRKDDGEL-PKSRYEIRDDHTLKIRKVTA 283

Query: 706 ---GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATV 762
              GSY CVA+N++GKAE+S  LT+++                   P F+   +     +
Sbjct: 284 GDMGSYTCVAENMVGKAEASATLTVQE------------------PPHFVVKPRDQVVAL 325

Query: 763 NEEFKFTVQVSISPEPKVSWFRD-DQQVVESDNVKILKETLGVCH---LKIHALEVADQA 818
                F  + + +P+P + W R+  Q ++ S           V     L I  ++ +D  
Sbjct: 326 GRTVTFQCEATGNPQPAIFWRREGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVG 385

Query: 819 EWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEE--LKAVLSEGGAVNLECKVIGVPQP 876
            + C   N  G  IT  +L++      + P  + +  +   ++  G + L C   G P P
Sbjct: 386 YYICQTLNVAGSIITKAYLEVTDVIADRPPPVIRQGPVNQTVAVDGTLILSCVATGSPAP 445

Query: 877 TLKWFKDGRELKAGDIHKIISGEDGTCCL--------GIYTCEAHNCMGTTSSSAALLGF 928
           T+ W KDG  +   D  +I   E G   +        G YTC A    G  + SA +   
Sbjct: 446 TILWRKDGVLVSTQD-SRIKQLESGVLQIRYAKLGDTGRYTCTASTPSGEATWSAYIEVQ 504

Query: 929 EDKSQIEKAEEGKKALIVKDPS 950
           E    ++        LI   PS
Sbjct: 505 EFGVPVQPPRPTDPNLIPSAPS 526

Receptor for SLIT1 and SLIT2 which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development. In axon growth cones, the silencing of the attractive effect of NTN1 by SLIT2 may require the formation of a ROBO1-DCC complex (By similarity). May be required for lung development.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1075
350422387	10117	PREDICTED: hypothetical protein LOC10074	0.721	0.076	0.604	0.0
307204648	9315	Myosin light chain kinase, smooth muscle	0.718	0.082	0.594	0.0
242022544	6699	myosin light chain kinase, putative [Ped	0.707	0.113	0.612	0.0
307172721	7605	Myosin light chain kinase, smooth muscle	0.717	0.101	0.586	0.0
357622614	6042	Stretchin-Mlck, isoform A [Danaus plexip	0.717	0.127	0.591	0.0
195121632	4529	GI20420 [Drosophila mojavensis] gi|19391	0.723	0.171	0.566	0.0
195383866	4728	GJ20094 [Drosophila virilis] gi|19414544	0.724	0.164	0.564	0.0
270003693	11744	hypothetical protein TcasGA2_TC002962 [T	0.700	0.064	0.589	0.0
91078936	3424	PREDICTED: similar to Stretchin-Mlck CG1	0.700	0.219	0.589	0.0
195436340	5295	GK22102 [Drosophila willistoni] gi|19416	0.724	0.147	0.562	0.0

>gi|350422387|ref|XP_003493149.1| PREDICTED: hypothetical protein LOC100743398 [Bombus impatiens]

 Score = 1019 bits (2635), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/799 (60%), Positives = 624/799 (78%), Gaps = 23/799 (2%)

Query: 289  QGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASN-ESGY---STAKFELSVE- 343
            +GD PI  +R+R   R    +L +++ ++DD G Y++ A+  + G+   S+ K  LS++ 
Sbjct: 1505 RGDVPIPSDRYRVQMRGNVVQLTLKQSQKDDTGHYALVATRVDQGFDKGSSKKIHLSIDE 1564

Query: 344  -SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDG 402
             S+  D P F+RRL D+AVKVGTR R LVEIRS T  +I W+RN   +     +   H+G
Sbjct: 1565 ASEEGDPPVFLRRLTDLAVKVGTRTRFLVEIRSSTTPQITWHRNAEPVHAGSRFSFVHEG 1624

Query: 403  NFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG 462
            NFY +D++ V++ D G WTC+AEN  GRS C+  L+V+VPKAYK P F +EL A+LTE G
Sbjct: 1625 NFYCVDVAPVTVEDEGHWTCMAENRGGRSSCTSRLTVIVPKAYKRPEFVEELRALLTETG 1684

Query: 463  TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFST 522
            TVSLECKV+G+PTP L W+KD+K+IKAGD+FALTAN  DP+SLG YTCEAVNCMG A+S+
Sbjct: 1685 TVSLECKVVGVPTPVLRWFKDDKEIKAGDVFALTANLDDPTSLGIYTCEAVNCMGTAYSS 1744

Query: 523  SRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRS 582
            S+V   G+ S  +    P +SL P GP P F K +++   +IG +  L CQV VPPWP++
Sbjct: 1745 SKVHVVGKGSR-EGSLKPADSLTPSGPLPTFTKILQDECCRIGDTLRLSCQVQVPPWPKA 1803

Query: 583  IYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVH 642
            I WYNKEG +E S+KYH+M DGLGGY IE++ +EA+D+GEWKCVATS+  +KQF+  YV 
Sbjct: 1804 ITWYNKEGRIEPSEKYHVMEDGLGGYFIEVSPVEAMDEGEWKCVATSAEDMKQFTTCYVA 1863

Query: 643  VLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGT 702
            + +PKNYRKPRF+ESLKAV+T++GLVSFECKVVGFPTP L+WFKD +ELKPGDVYQLTGT
Sbjct: 1864 MSIPKNYRKPRFMESLKAVLTEEGLVSFECKVVGFPTPLLRWFKDGQELKPGDVYQLTGT 1923

Query: 703  SSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATV 762
            +SLGSYCC+A+N MG+A+S+ +LTIEDI+N L+EE++L LL+ N+ P FI+GL+SC+A +
Sbjct: 1924 NSLGSYCCIARNCMGEAKSTAELTIEDIQNQLNEEERLQLLSTNQPPIFIKGLRSCEARI 1983

Query: 763  NEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKC 822
            NE+F+FTVQVSISPEP ++W+RDDQ V E++  ++ KE LG CHL +  LE  DQAEWKC
Sbjct: 1984 NEDFRFTVQVSISPEPSLAWYRDDQPVEENEKYQVAKENLGTCHLDVQKLEFLDQAEWKC 2043

Query: 823  IATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFK 882
            +A+ND GQS+TSCFLKL +PKHYKKPKFLE L+A+LSE GAVNLECKVIGVPQP LKW+K
Sbjct: 2044 VASNDHGQSVTSCFLKLIIPKHYKKPKFLESLRAILSEEGAVNLECKVIGVPQPILKWYK 2103

Query: 883  DGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKK 942
            DG ELK GDIH+IISG+DGTCCLG YTCEA NCMGT SSSA+LLGFEDK  ++K  E K+
Sbjct: 2104 DGVELKPGDIHRIISGQDGTCCLGTYTCEATNCMGTVSSSASLLGFEDKLPVQK--EAKE 2161

Query: 943  AL------IVKDPSLSTIQEEGTSEIYDTPM----ASIEER-EISFSFDGKEVSVSLYET 991
             L      + ++ SLSTI EE TS++YDTP      ++++R E+SFSFDGKEVSVSLYET
Sbjct: 2162 PLSPNGHELARNLSLSTIHEERTSQLYDTPQTDHSVTLDDRGEVSFSFDGKEVSVSLYET 2221

Query: 992  PDLTEEEAIKVVEMYADELSEHISDKNMIELPPLRFTKESSRSQNIQMEAVVIDV--DHK 1049
            PDLTEEEA+++VEMYAD+LSEH+++ N+IELPP+RF KESS S N+ MEAVVIDV  D+ 
Sbjct: 2222 PDLTEEEALQIVEMYADQLSEHVTEHNVIELPPMRFVKESSNSGNLLMEAVVIDVSPDYF 2281

Query: 1050 GTTED-DDLRTDAGLDEIS 1067
             + ED DDLRT+A  +++S
Sbjct: 2282 VSAEDGDDLRTEADFEDVS 2300

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307204648|gb|EFN83270.1| Myosin light chain kinase, smooth muscle [Harpegnathos saltator]

 Score = 1013 bits (2618), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/790 (59%), Positives = 616/790 (77%), Gaps = 18/790 (2%)

Query: 293  PIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASN--ESGYSTAKFELSVES---QVP 347
            PI   R+R   R    +L +++ +++D G YS+ A+   +   ++ K  +S++    +  
Sbjct: 1471 PISSERYRLSMRGNVVQLALKQSQKNDAGYYSLVATRLGQDKGASKKIHMSIDETSYEEG 1530

Query: 348  DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
            + P F+RRL D+AVKVGTR R LVEIRS T +KI WY+ND  + E   +   H+GNF+ +
Sbjct: 1531 EPPIFLRRLSDLAVKVGTRTRFLVEIRSATTLKITWYKNDAVIHEGPRFSLVHEGNFHCV 1590

Query: 408  DLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLE 467
            D+  V++ D GRWTC+AEN  GRS C+  L+V+VPKAYK P F +EL A+LTE GTVSLE
Sbjct: 1591 DVVPVTVEDQGRWTCMAENRSGRSSCTSTLTVVVPKAYKKPEFIEELRALLTETGTVSLE 1650

Query: 468  CKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRV-- 525
            CKV+G+PTP L W+KDNK+IKAGD+FALTANP DP+SLG YTCEAVNCMG A+S+S+V  
Sbjct: 1651 CKVVGVPTPVLRWFKDNKEIKAGDVFALTANPDDPTSLGVYTCEAVNCMGTAYSSSKVHV 1710

Query: 526  IARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYW 585
            + RG +   +    P ++L P GP P+F + +++   +IG + +L C+V VPPWPR+I W
Sbjct: 1711 VGRGSR---EGSLKPADALTPSGPLPVFKQILQDECCRIGDTLVLSCRVQVPPWPRAISW 1767

Query: 586  YNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLM 645
            YNK G VE+S+KYH+M DG+GGYSIE+  +EAVD+GEWKCVATS   +KQ ++ YV + +
Sbjct: 1768 YNKGGRVESSEKYHVMEDGIGGYSIEVKQVEAVDEGEWKCVATSEENMKQITSCYVAMSI 1827

Query: 646  PKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL 705
            P+NYRKPRF+E+LKAV+T++GLVSFECKVVGFPTP L WFKD +ELKPGDVYQLTGT+SL
Sbjct: 1828 PRNYRKPRFMENLKAVLTEEGLVSFECKVVGFPTPLLSWFKDGQELKPGDVYQLTGTNSL 1887

Query: 706  GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEE 765
            GSYCC+A+N MG+A+S+ +LTIEDI+N L+EE++  LL++N+ PKFI+GL+SC+A +NE+
Sbjct: 1888 GSYCCIARNCMGEAKSTAELTIEDIQNQLNEEERFQLLSSNQPPKFIKGLRSCEARINED 1947

Query: 766  FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT 825
            F+F VQVS++PEP +SW+RDD  V E+D   + KETLG CHL++  LE  DQAEWKC+A 
Sbjct: 1948 FQFIVQVSVAPEPNLSWYRDDALVDENDKYHLAKETLGTCHLEVRKLEFIDQAEWKCVAA 2007

Query: 826  NDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGR 885
            NDFG S+TSCFLKL +PKHYK+PKFLE L+A+LSE GAVNLECKVIGVPQP LKW+KD  
Sbjct: 2008 NDFGHSVTSCFLKLIIPKHYKRPKFLESLRAILSEEGAVNLECKVIGVPQPILKWYKDNV 2067

Query: 886  ELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALI 945
            ELK GDIH+IISG+DGTCCLG YTCEA NCMGT SSSA+LLGFEDK   ++ +      +
Sbjct: 2068 ELKPGDIHRIISGQDGTCCLGTYTCEATNCMGTVSSSASLLGFEDKKTTKEVQSPNGHEL 2127

Query: 946  VKDPSLSTIQEEGTSEIYDTPMA----SIEER-EISFSFDGKEVSVSLYETPDLTEEEAI 1000
             ++ SLSTI EE TS++YDTP      +++ER E+SFSFDGKEVSVSLYETPDLTEEEA+
Sbjct: 2128 ARNLSLSTIHEERTSQLYDTPQTDHSVTLDERGEVSFSFDGKEVSVSLYETPDLTEEEAL 2187

Query: 1001 KVVEMYADELSEHISDKNMIELPPLRFTKESSRSQNIQMEAVVIDV--DHKGTTED-DDL 1057
            ++VEMYAD+LSEH+++ N+IELPP+RF KE+S S N+ MEAVVIDV  D+  + ED DDL
Sbjct: 2188 QIVEMYADQLSEHVTEHNVIELPPMRFVKETSTSGNLLMEAVVIDVSPDYFVSAEDGDDL 2247

Query: 1058 RTDAGLDEIS 1067
            RT+A  +++S
Sbjct: 2248 RTEADFEDVS 2257

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022544|ref|XP_002431700.1| myosin light chain kinase, putative [Pediculus humanus corporis] gi|212517008|gb|EEB18962.1| myosin light chain kinase, putative [Pediculus humanus corporis]

 Score = 1004 bits (2597), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/777 (61%), Positives = 618/777 (79%), Gaps = 16/777 (2%)

Query: 310  LNIRRVRRDDGGRYSVTASNESGYSTAKFELSV-ESQVPDAPAFIRRLHDIAVKVGTRAR 368
            LN++ V  DD G Y+VTA N +G S +  +L + +S+  + P FIR+L+D++VKVGTR R
Sbjct: 10   LNLQGVTPDDAGEYTVTAKNIAGESQSSVKLRIKDSEDDETPIFIRKLNDLSVKVGTRTR 69

Query: 369  LLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAV 428
             LVEIRS T++K+ WYRND  + EN  Y   H+GNF+ +D++ V++ D GRW C+ EN V
Sbjct: 70   FLVEIRSSTDLKVVWYRNDVPIFENDRYHFLHEGNFFCVDVAPVTVEDGGRWACVGENQV 129

Query: 429  GRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK 488
            GR+ CSC L+VL+PKAY AP F +EL+A+L+ QGTVSLECKV+G+PTP L WYKD K+IK
Sbjct: 130  GRASCSCRLNVLIPKAYSAPNFIEELKAVLSNQGTVSLECKVIGVPTPVLKWYKDGKEIK 189

Query: 489  AGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRV--IARG-QQSFLDNDDVPFNSLM 545
            AGD+FALTANP DP+SLGTYTCEAVNCMG +FS+SRV  + RG ++  L   D P  +  
Sbjct: 190  AGDMFALTANPDDPTSLGTYTCEAVNCMGKSFSSSRVHVMGRGSREGSLKPADYPSIT-- 247

Query: 546  PPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGL 605
              GP P F +E++N K KIG++  L CQ+ VPPWPR+I+WYNKEG VE S+KYHIM DGL
Sbjct: 248  --GPPPHFSQELKNEKVKIGSTLNLNCQIDVPPWPRTIHWYNKEGKVEPSEKYHIMEDGL 305

Query: 606  GGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDD 665
            GGYSIEI  LEA+D+GEWKCVA S +GV   S  +V +  PKNYRKPRF+ESLKA++TD+
Sbjct: 306  GGYSIEIYPLEAIDEGEWKCVAKSDTGVMGISQCFVEMSYPKNYRKPRFLESLKAILTDE 365

Query: 666  GLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGSYCCVAKNVMGKAESSTQL 725
            GLVSFECKVVGFPTP LQWFKD +EL+PGDVYQLTGT+SLGSY C+AKN MG+A+S+ +L
Sbjct: 366  GLVSFECKVVGFPTPQLQWFKDGQELRPGDVYQLTGTNSLGSYSCIAKNCMGEAKSTAEL 425

Query: 726  TIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRD 785
            T+EDI+  L++E+K LL + N+ P+FI GLKSC+A +NE F+FTV+ +I P   + W++D
Sbjct: 426  TVEDIQYQLNDEEKSLLFSKNQPPRFIRGLKSCEALINENFRFTVKATIVPTADLIWYKD 485

Query: 786  DQQVVESDN-VKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKH 844
            D+++ +SD    I +E LGVCHL +  L++ DQAEWKC+ATN+FGQS+TS FLKL +PKH
Sbjct: 486  DKKIEKSDERFLIQQENLGVCHLDVKKLDITDQAEWKCVATNEFGQSVTSGFLKLIIPKH 545

Query: 845  YKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC 904
            +KKP+FLE L+A+L+E GAVNLECKVIG+PQPTLKWFKDG+ELK GDIHKIISG+DGTCC
Sbjct: 546  FKKPRFLECLRAILTEKGAVNLECKVIGIPQPTLKWFKDGKELKPGDIHKIISGQDGTCC 605

Query: 905  LGIYTCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKAL-IVKDPSLSTIQEEGTSEIY 963
            LG YTC+A NCMG+ SSSA+LLGFED++  ++    K  L + K+ SLSTI EE TS++Y
Sbjct: 606  LGTYTCQAENCMGSVSSSASLLGFEDRAAKKQPVLYKPELNLAKNTSLSTINEERTSQMY 665

Query: 964  DTPMA----SIEER-EISFSFDGKEVSVSLYETPDLTEEEAIKVVEMYADELSEHISDKN 1018
            DTP++    + +ER ++SFSFDGKEVS+SLYETPDLTEEEA++VVEMYADELSEH+S++N
Sbjct: 666  DTPLSEHSITADERGDVSFSFDGKEVSISLYETPDLTEEEALQVVEMYADELSEHVSEQN 725

Query: 1019 MIELPPLRFTKESSRSQNIQMEAVVIDVDHKG-TTEDDDLRTDAGLDEISEDLMLHH 1074
            ++ELPPLRFTKESS+S  + MEAVVID+  +  ++ +DDLRT+A L+++S    L H
Sbjct: 726  VVELPPLRFTKESSKSGPLLMEAVVIDITPEYFSSAEDDLRTEADLEDVSMVEELQH 782

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307172721|gb|EFN64027.1| Myosin light chain kinase, smooth muscle [Camponotus floridanus]

 Score =  994 bits (2570), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/793 (58%), Positives = 610/793 (76%), Gaps = 22/793 (2%)

Query: 293  PIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTAS-----NESGYSTAKFELSVES--- 344
            PI  +R+R   R    +L +++ R++D G YS+ A+     N+ G +  K  LS+     
Sbjct: 57   PIPSDRYRLSMRGNVVQLALKQSRKNDAGYYSLVATRLGQENDKG-AVKKIHLSISEASY 115

Query: 345  QVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNF 404
            +  D P F+RRL D+AVKVGTR R LVEIRS T  KI WY++D  + E   +   H+GNF
Sbjct: 116  EEGDPPIFLRRLSDLAVKVGTRTRFLVEIRSSTTPKISWYKDDSPIHEGPRFSLVHEGNF 175

Query: 405  YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTV 464
            + +D++ V++ D G WTC+AEN  GRS C+  L+V+VPKAYK P F +EL A+LTE GTV
Sbjct: 176  HCVDVAPVTVEDQGCWTCMAENRSGRSSCTSTLTVIVPKAYKRPEFVEELRALLTETGTV 235

Query: 465  SLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSR 524
            SLECKV+G+PTP L W+KD+K+IKAGD+FALTAN  DP+SLG YTCEA NCMG  +S+S+
Sbjct: 236  SLECKVVGVPTPVLRWFKDSKEIKAGDVFALTANADDPTSLGVYTCEANNCMGTTYSSSK 295

Query: 525  V--IARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRS 582
            V  + RG +   +    P ++L P GP P+F + +++   +IG + +L C+  VPPWP++
Sbjct: 296  VHVVGRGSR---EGSLKPADTLAPSGPLPVFKQMLQDECCRIGDTLVLSCRAQVPPWPKA 352

Query: 583  IYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVH 642
            I WYNK G VE  ++YHI+ DG+GGYSIE+  +EA+D+GEWKCVATS   +KQF++ YV 
Sbjct: 353  IAWYNKGGRVEPDERYHIIEDGIGGYSIEVKQVEAMDEGEWKCVATSEENMKQFTSCYVA 412

Query: 643  VLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGT 702
            + +P+NYRKPRF+E+LKAV+T++GLVSFECKVVGFPTP L+WFKD +ELKPGDVYQLTGT
Sbjct: 413  MSIPRNYRKPRFMENLKAVLTEEGLVSFECKVVGFPTPLLRWFKDGQELKPGDVYQLTGT 472

Query: 703  SSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATV 762
            +SLGSYCC+AKN MG+A+S+ +LTIEDI+N L+EE++  LL+ N+ PKFI+GL+SC+A +
Sbjct: 473  NSLGSYCCIAKNCMGEAKSTAELTIEDIQNQLNEEERFQLLSTNQPPKFIKGLRSCEARI 532

Query: 763  NEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKC 822
            NE+F+FTVQVS++P+P +SW+RDD  + ESD     KE LG CHL++  LE  DQAEWKC
Sbjct: 533  NEDFRFTVQVSVAPQPSLSWYRDDTLMEESDKYHGAKENLGTCHLEVRKLEFIDQAEWKC 592

Query: 823  IATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFK 882
            +A NDFG S+TSCFLKL +PKHYKKPKFLE L+A+LSE GAVNLECKVIGVPQP LKW+K
Sbjct: 593  VAANDFGHSVTSCFLKLIIPKHYKKPKFLESLRAILSEEGAVNLECKVIGVPQPVLKWYK 652

Query: 883  DGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKK 942
            D  ELK GDIH+IISG+DGTCCLG YTCEA NCMGT SSSA+LLGFEDK + ++ +    
Sbjct: 653  DNVELKPGDIHRIISGQDGTCCLGTYTCEATNCMGTVSSSASLLGFEDKKETKEIQSPNG 712

Query: 943  ALIVKDPSLSTIQEEGTSEIYDTPM----ASIEER-EISFSFDGKEVSVSLYETPDLTEE 997
              + ++ SLSTI EE TS++YDTP      + +ER E+SFSFDGKEVSVSLYETPDLTEE
Sbjct: 713  HELARNLSLSTIHEERTSQLYDTPQTDHSVTFDERGEVSFSFDGKEVSVSLYETPDLTEE 772

Query: 998  EAIKVVEMYADELSEHISDKNMIELPPLRFTKESSRSQNIQMEAVVIDV--DHKGTTED- 1054
            EA+++VEMYAD+LSEH+++ N+IELPP+RF KE+S S N+ MEAVVIDV  D+  + E+ 
Sbjct: 773  EALQIVEMYADQLSEHVTEHNVIELPPMRFVKETSTSGNLLMEAVVIDVSPDYFVSAEEG 832

Query: 1055 DDLRTDAGLDEIS 1067
            DDLRT+A  +++S
Sbjct: 833  DDLRTEADFEDVS 845

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357622614|gb|EHJ74040.1| Stretchin-Mlck, isoform A [Danaus plexippus]

 Score =  972 bits (2513), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/781 (59%), Positives = 593/781 (75%), Gaps = 10/781 (1%)

Query: 295  FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE-SQVP---DAP 350
               RF  +   G   L+I   R  D G Y++ ASN +G  T +  + V   ++P   + P
Sbjct: 32   LNERFTTLQSAGGVRLSITAARSGDSGVYTLQASNAAGKDTTRVRVEVSPDEMPTGDNPP 91

Query: 351  AFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLS 410
             F+RRL D+ VKVGTR R LVEI S TE ++ WYRNDR+L E +      DGNF+  D+S
Sbjct: 92   TFLRRLQDLTVKVGTRTRFLVEIVSATECRVTWYRNDRRLMEAERIALVRDGNFWCADVS 151

Query: 411  SVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKV 470
            +VS+ D+GRWTC AEN  GR+ CS  L+VLVPKAYK P F +EL A+LTEQGTVSLECKV
Sbjct: 152  AVSVEDAGRWTCTAENIGGRASCSAHLNVLVPKAYKRPEFVEELRALLTEQGTVSLECKV 211

Query: 471  MGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQ 530
            +G+PTP L W+KD+++IKAGD+FALTAN +DP+SLGTYTCEAVNCMG A+S+S+V   G+
Sbjct: 212  VGVPTPVLRWFKDSREIKAGDVFALTANAEDPTSLGTYTCEAVNCMGRAYSSSKVQVVGR 271

Query: 531  QSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG 590
             S   +       ++ P   PIF KE+E+   +I     L CQ++VPPWPRS+ WYNKEG
Sbjct: 272  ASREGSSRPATGGIIEP--PPIFTKELEDQFVRICEPLTLSCQIVVPPWPRSVVWYNKEG 329

Query: 591  VVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYR 650
             VEASDKYHI+ DG+GGY IEI   E  D+GEWKCVATS+ G    S  YV + +PKNYR
Sbjct: 330  KVEASDKYHILEDGVGGYIIEIQTSEFADEGEWKCVATSAGGRVGISTCYVSMDVPKNYR 389

Query: 651  KPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGSYCC 710
            KPRF+E+L+AV+T++GLVSFECKVVGFPTP L WFKD +ELKPGDVYQLTGT+SLGSYCC
Sbjct: 390  KPRFMENLQAVLTEEGLVSFECKVVGFPTPVLSWFKDGQELKPGDVYQLTGTNSLGSYCC 449

Query: 711  VAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTV 770
            +AKN MG+A SS +LT+EDI+N L+EE+KL L + N+APKF++GLKS +A ++E F+F +
Sbjct: 450  IAKNFMGQASSSAELTVEDIQNQLNEEEKLQLFSKNQAPKFLKGLKSVEAKIDEPFRFMI 509

Query: 771  QVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQ 830
            +++I PEPKV W+RD+Q V ES    +  E  GV  L I  LE  DQAEWKC+A ND+GQ
Sbjct: 510  KIAIPPEPKVLWYRDEQPVDESSRCHLGHEERGVFVLDIQNLEFMDQAEWKCVAMNDYGQ 569

Query: 831  SITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAG 890
            S+TSCFLKL +P+HYKKP+FLE L+A+LS+ GAVNLECKVIGVPQP LKW+KDG ELK G
Sbjct: 570  SVTSCFLKLVIPRHYKKPRFLENLQAILSDEGAVNLECKVIGVPQPVLKWYKDGEELKPG 629

Query: 891  DIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALIVKDPS 950
            DIH+IISG+DGTCCLG YTCEA NCMG  +SSA+LLGFED  + +  ++     + ++ S
Sbjct: 630  DIHRIISGQDGTCCLGTYTCEAQNCMGIAASSASLLGFEDSVKAKNKKQVDDQALQRNLS 689

Query: 951  LSTIQEEGTSEIYDTPMASI---EEREISFSFDGKEVSVSLYETPDLTEEEAIKVVEMYA 1007
            LSTI EE TS++YDTP+  I   ++ EISFSFDGKEVSVSLYETPDLTEEEA+++VEMYA
Sbjct: 690  LSTIHEERTSQMYDTPVGDITLDDKGEISFSFDGKEVSVSLYETPDLTEEEALQIVEMYA 749

Query: 1008 DELSEHISDKNMIELPPLRFTKESSRSQNIQMEAVVIDVDHKG-TTEDDDLRTDAGLDEI 1066
            D+LSE++++ N++ELPPLRF KE+S S N+ MEA++IDV  +  T+ ++DLRT+A +++I
Sbjct: 750  DQLSENVTEHNVVELPPLRFVKETSTSGNLLMEAIIIDVSPEYFTSPEEDLRTEADIEDI 809

Query: 1067 S 1067
            S
Sbjct: 810  S 810

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195121632|ref|XP_002005324.1| GI20420 [Drosophila mojavensis] gi|193910392|gb|EDW09259.1| GI20420 [Drosophila mojavensis]

 Score =  948 bits (2451), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/796 (56%), Positives = 586/796 (73%), Gaps = 18/796 (2%)

Query: 284  FSFRAQGDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK--FEL 340
            +  R +GD PI   +RFR        +L +  V+R+D G Y++ A    G   A+   EL
Sbjct: 32   YRKRTRGDIPIENSDRFRITQTSNAVQLAVEHVQREDAGHYTLFART-KGSEVARRHVEL 90

Query: 341  SVE--SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRT 398
             VE  S   D P F+RRL D++VKVGTR RLL EIRS T++K+ WYRNDR++ EN     
Sbjct: 91   IVEDRSTGEDPPVFLRRLVDLSVKVGTRTRLLTEIRSSTDLKLTWYRNDRRICENDRITE 150

Query: 399  QHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAIL 458
             ++G F+++++S V L D G+W  +AEN  GR+ C   L+VLVPKAYK P F +EL A+L
Sbjct: 151  TNEGTFHYLEVSPVVLEDGGQWMLMAENMGGRNSCLATLNVLVPKAYKTPEFVEELRAVL 210

Query: 459  TEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGA 518
            TEQGTVSLECKV+G+PTP L W+KD+K+IKAGDIFALTAN  DP+SLGTYTCEA NCMG 
Sbjct: 211  TEQGTVSLECKVVGVPTPHLRWFKDSKEIKAGDIFALTANADDPTSLGTYTCEAKNCMGV 270

Query: 519  AFSTSRV--IARGQQ--SFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQV 574
             +S+S+V  + RG +  S    D+V  N      P PIF  E+ +    IG + IL CQV
Sbjct: 271  TYSSSKVHVVGRGSREGSLKPADNVSSN-----APPPIFTNELRDQSVHIGDTIILGCQV 325

Query: 575  LVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVK 634
            +VPPWP+S+ WYNK+G VE  D+Y ++ DGLG Y IEI   E+ D G+WKCV TS  G+ 
Sbjct: 326  VVPPWPKSVTWYNKDGRVETDDRYKLIEDGLGVYMIEIKPSESCDAGDWKCVVTSFEGIV 385

Query: 635  QFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPG 694
              S   V++ +P+NYRKPRF+ESL+AV+T++GLVSFECKVVGFPTP L+WFKD  ELKPG
Sbjct: 386  GISTCVVNMDIPRNYRKPRFMESLRAVLTEEGLVSFECKVVGFPTPVLKWFKDGHELKPG 445

Query: 695  DVYQLTGTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEG 754
            DVYQLTGT+SLG+YCC+A+N MG+  S+  LT+EDI+N L++E++L+    N+APKF+ G
Sbjct: 446  DVYQLTGTNSLGTYCCIARNCMGETSSTAVLTVEDIQNQLTDEERLVFTHQNQAPKFLTG 505

Query: 755  LKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEV 814
            LKS  A +NE F+F V V  +P+P +SWFRD+  +  ++     +       L I + E 
Sbjct: 506  LKSTDAKINEPFQFKVVVRATPDPILSWFRDELPIDPNERYNHYRGENEEWLLDIKSAEF 565

Query: 815  ADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVP 874
             DQAEWKC+A NDFG SITSCFLKL +P+HYKKP+FLE L+AVL+E GAVNLECKVIGVP
Sbjct: 566  VDQAEWKCVAVNDFGTSITSCFLKLQIPRHYKKPRFLECLRAVLTEEGAVNLECKVIGVP 625

Query: 875  QPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKSQI 934
            QP LKW+KDG ELK GDIH+IISG+DGTCCLG YTCEA NCMG  +SSA+LLGFED  + 
Sbjct: 626  QPVLKWYKDGVELKPGDIHRIISGQDGTCCLGTYTCEARNCMGVVASSASLLGFEDAQRA 685

Query: 935  EKAEEGKKALIVKDPSLSTIQEEGTSEIYDTPMASI---EEREISFSFDGKEVSVSLYET 991
            +K E+ +   + ++ SLSTIQEE TS++Y+TP+  I   E+ ++SFSFDGKEVSVSLYET
Sbjct: 686  QKPEQSEVNELQRNLSLSTIQEERTSQLYETPVGDITIDEKGDVSFSFDGKEVSVSLYET 745

Query: 992  PDLTEEEAIKVVEMYADELSEHISDKNMIELPPLRFTKESSRSQNIQMEAVVIDVDHKGT 1051
            PDLTEEEA+K+VEMYAD++SEH+++ N++ELPPLRF KE+S+S  + MEAVVID+  +  
Sbjct: 746  PDLTEEEALKIVEMYADQISEHVTEHNIVELPPLRFVKETSQSGKLLMEAVVIDIAPEYF 805

Query: 1052 TEDDDLRTDAGLDEIS 1067
            T D+DLRT+AG+D+IS
Sbjct: 806  THDEDLRTEAGMDDIS 821

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195383866|ref|XP_002050646.1| GJ20094 [Drosophila virilis] gi|194145443|gb|EDW61839.1| GJ20094 [Drosophila virilis]

 Score =  946 bits (2446), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/795 (56%), Positives = 588/795 (73%), Gaps = 16/795 (2%)

Query: 284  FSFRAQGDHPI-FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK-FELS 341
            +  R +GD PI   +RFR        +L +  V+R+D G Y++ A  +S     K  EL 
Sbjct: 32   YRKRTRGDVPIENSDRFRITQTSNAVQLAVEHVQREDAGHYTLFARTKSNEVVRKHVELI 91

Query: 342  VE--SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQ 399
            VE  S   D P F+RRL D++VKVGTR RLL EIRS T++K+ WYRNDR++ EN   +  
Sbjct: 92   VEDRSTGEDPPVFLRRLVDLSVKVGTRTRLLTEIRSSTDLKLTWYRNDRRICENDRIKET 151

Query: 400  HDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILT 459
            ++G F+++++S V L D G+W  +AEN  GR+ C   L+VLVPKAYK P F +EL A+LT
Sbjct: 152  NEGTFHYLEVSPVILEDGGQWMLMAENMGGRNSCLATLNVLVPKAYKTPEFVEELRAVLT 211

Query: 460  EQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAA 519
            EQGTVSLECKV+G+PTP L W+KD+K+IKAGDIFALTAN  DP+SLGTYTCEA NCMG  
Sbjct: 212  EQGTVSLECKVVGVPTPHLRWFKDSKEIKAGDIFALTANADDPTSLGTYTCEAKNCMGVT 271

Query: 520  FSTSRV--IARGQQ--SFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVL 575
            +S+S+V  + RG +  S    D+V  N+     P PIF  E+ N    IG + IL CQV+
Sbjct: 272  YSSSKVHVVGRGSREGSLKPADNVSSNA-----PPPIFTNELRNQSVHIGDTIILGCQVV 326

Query: 576  VPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQ 635
            VPPWP+S+ WYNK+G V+  ++Y ++ DGLG Y IEI   E+ D G+WKCV TS  G   
Sbjct: 327  VPPWPKSVTWYNKDGRVDTDERYKLIEDGLGVYMIEIKPSESCDAGDWKCVVTSFEGCVG 386

Query: 636  FSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD 695
             SA  V++ +P+NYRKPRF+ESL+AV+T++GLVSFECKVVGFPTP L+WFKD  ELKPGD
Sbjct: 387  ISACVVNMDIPRNYRKPRFMESLRAVLTEEGLVSFECKVVGFPTPVLKWFKDGHELKPGD 446

Query: 696  VYQLTGTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL 755
            VYQLTGT+SLG+YCC+A+N MG+  S+  LT+EDI+N L++E++L+    N+APKF+ GL
Sbjct: 447  VYQLTGTNSLGTYCCIARNCMGETSSTAVLTVEDIQNQLTDEERLVFTHQNQAPKFLTGL 506

Query: 756  KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVA 815
            KS  A +NE F+F V V  +P+P +SWFRD+  +  ++     +       L I + E  
Sbjct: 507  KSTDAKINEPFQFKVVVKATPDPILSWFRDELPIDPNERYNHYRGENEEWLLDIKSAEFI 566

Query: 816  DQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQ 875
            DQAEWKC+A NDFG SITSCFLKL +P+HYKKP+FLE L+AVL+E GAVNLECKVIGVPQ
Sbjct: 567  DQAEWKCVAVNDFGTSITSCFLKLQIPRHYKKPRFLECLRAVLTEEGAVNLECKVIGVPQ 626

Query: 876  PTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKSQIE 935
            P LKW+KDG ELK GDIH+IISG+DGTCCLG YTCEA NCMG  +SSA+LLGFED  + +
Sbjct: 627  PVLKWYKDGVELKPGDIHRIISGQDGTCCLGTYTCEARNCMGVVASSASLLGFEDAQRTQ 686

Query: 936  KAEEGKKALIVKDPSLSTIQEEGTSEIYDTPMASI---EEREISFSFDGKEVSVSLYETP 992
            K E+ +   + ++ SLSTIQEE TS++Y+TP+  I   ++ ++SFSFDGKEVSVSLYETP
Sbjct: 687  KPEQPQANELQRNYSLSTIQEERTSQLYETPVGDITIDDKGDVSFSFDGKEVSVSLYETP 746

Query: 993  DLTEEEAIKVVEMYADELSEHISDKNMIELPPLRFTKESSRSQNIQMEAVVIDVDHKGTT 1052
            DLTEEEA+K+VEMYAD++SEH+++ N++ELPPLRF KE+S+S  + MEAVVID+  +  T
Sbjct: 747  DLTEEEALKIVEMYADQISEHVTEHNIVELPPLRFVKETSQSGKLLMEAVVIDISPEYFT 806

Query: 1053 EDDDLRTDAGLDEIS 1067
             D+D+RT+AG+D+IS
Sbjct: 807  HDEDMRTEAGMDDIS 821

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270003693|gb|EFA00141.1| hypothetical protein TcasGA2_TC002962 [Tribolium castaneum]

 Score =  943 bits (2438), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/773 (58%), Positives = 580/773 (75%), Gaps = 20/773 (2%)

Query: 309  ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES-----QVPDAPAFIRRLHDIAVKV 363
            +L +  V++ D G Y+VTA + SG ++   EL V S        + PAF+RRL+D++VKV
Sbjct: 119  QLTLDDVQKSDAGMYTVTAKSPSGTASRDLELRVNSGKTTDDNDEPPAFLRRLNDLSVKV 178

Query: 364  GTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCL 423
            GTR R LVEIRS +E+ I W+ N+ K+EE +  R  ++  F+ ID++ V+  D+GRWTC 
Sbjct: 179  GTRTRFLVEIRSCSELTIEWFHNEEKVEEGERLRFVNESGFHCIDVAPVTADDAGRWTCT 238

Query: 424  AENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKD 483
            A N  G++  +C L+VLVPK YK P F +EL A+LTEQGTVSLECKV+G+PTP L W+KD
Sbjct: 239  ARNGSGQATSTCHLNVLVPKTYKPPEFLEELRALLTEQGTVSLECKVVGVPTPLLRWFKD 298

Query: 484  NKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNS 543
             K+IKAGD+FALTANP DP+SLGTY CEAVNCMG A S+S+V   G  S  +    P +S
Sbjct: 299  GKEIKAGDVFALTANPDDPTSLGTYVCEAVNCMGKAVSSSKVHVVGTGSR-EGSLKPADS 357

Query: 544  LMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVE---ASDKYHI 600
             +P GP PIF ++++N   KIG   +L CQV VPPWP+S+ WYN EG +    +  +Y  
Sbjct: 358  SIPSGPPPIFTRDLQNESIKIGDPLLLSCQVSVPPWPKSVAWYNSEGRINDEISGSRYRQ 417

Query: 601  MADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKA 660
            MADGLGGY +E+   EA D GEWKCVAT   G    S   V + +PK++RKPRF+++LKA
Sbjct: 418  MADGLGGYMLEVKPTEAADQGEWKCVATCLDGAISISTCDVKMTIPKHFRKPRFMDTLKA 477

Query: 661  VMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGSYCCVAKNVMGKAE 720
            V+T++GLVSFECKVVG PTP LQWFKD +ELKPGDVYQLTGT+SLGSYCC+AKN MG+A 
Sbjct: 478  VLTEEGLVSFECKVVGSPTPVLQWFKDGQELKPGDVYQLTGTNSLGSYCCIAKNCMGEAR 537

Query: 721  SSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSI-SPEPK 779
            SS +LT+EDI + L++E++  L+  ++APKFI GLKS +A VNE F+FTVQ+S+ +P P 
Sbjct: 538  SSAELTVEDIESQLNDEERNQLILRSQAPKFIHGLKSAEARVNEPFRFTVQISVTTPLPT 597

Query: 780  VSWFRDDQQV-VESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
            +SW+RDDQ +  E +    LKE LGV HL I  +E  DQAEWKC+ATN+FG S+TSCFLK
Sbjct: 598  LSWYRDDQPLDNEPERYVALKENLGVGHLDITRVEFMDQAEWKCVATNEFGHSVTSCFLK 657

Query: 839  LNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISG 898
            L +PKH+KKPKFLE L+AVLSE GAVNLECKVIGVP P LKW+KDG ELK GDIH+I SG
Sbjct: 658  LIIPKHFKKPKFLECLRAVLSEEGAVNLECKVIGVPPPVLKWYKDGVELKPGDIHRITSG 717

Query: 899  EDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALIVKDPSLSTIQEEG 958
            EDGTCCLG YTCEA NCMGT +SSA+LLGFED    +K    ++  + + PSLSTI EE 
Sbjct: 718  EDGTCCLGTYTCEARNCMGTVASSASLLGFED----QKTRAQQRMELARQPSLSTIHEER 773

Query: 959  TSEIYDTP---MASIEER-EISFSFDGKEVSVSLYETPDLTEEEAIKVVEMYADELSEHI 1014
            TS+IYDT      +I+++ E+SFSFDGKEVSVSLYETPDLTEEEAI++VEMYAD+LSEH+
Sbjct: 774  TSQIYDTAGDQSLTIDDKGEVSFSFDGKEVSVSLYETPDLTEEEAIQIVEMYADQLSEHV 833

Query: 1015 SDKNMIELPPLRFTKESSRSQNIQMEAVVIDVDHK-GTTEDDDLRTDAGLDEI 1066
            S+ N++ELPPLRF KE+S S N+ MEAVV+DV     T E+ DLRT+A ++EI
Sbjct: 834  SEHNIVELPPLRFVKETSTSGNLLMEAVVVDVSENFFTPEEQDLRTEADVEEI 886

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078936|ref|XP_973933.1| PREDICTED: similar to Stretchin-Mlck CG18255-PA [Tribolium castaneum]

 Score =  941 bits (2432), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/773 (58%), Positives = 580/773 (75%), Gaps = 20/773 (2%)

Query: 309  ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES-----QVPDAPAFIRRLHDIAVKV 363
            +L +  V++ D G Y+VTA + SG ++   EL V S        + PAF+RRL+D++VKV
Sbjct: 119  QLTLDDVQKSDAGMYTVTAKSPSGTASRDLELRVNSGKTTDDNDEPPAFLRRLNDLSVKV 178

Query: 364  GTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCL 423
            GTR R LVEIRS +E+ I W+ N+ K+EE +  R  ++  F+ ID++ V+  D+GRWTC 
Sbjct: 179  GTRTRFLVEIRSCSELTIEWFHNEEKVEEGERLRFVNESGFHCIDVAPVTADDAGRWTCT 238

Query: 424  AENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKD 483
            A N  G++  +C L+VLVPK YK P F +EL A+LTEQGTVSLECKV+G+PTP L W+KD
Sbjct: 239  ARNGSGQATSTCHLNVLVPKTYKPPEFLEELRALLTEQGTVSLECKVVGVPTPLLRWFKD 298

Query: 484  NKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNS 543
             K+IKAGD+FALTANP DP+SLGTY CEAVNCMG A S+S+V   G  S  +    P +S
Sbjct: 299  GKEIKAGDVFALTANPDDPTSLGTYVCEAVNCMGKAVSSSKVHVVGTGSR-EGSLKPADS 357

Query: 544  LMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVE---ASDKYHI 600
             +P GP PIF ++++N   KIG   +L CQV VPPWP+S+ WYN EG +    +  +Y  
Sbjct: 358  SIPSGPPPIFTRDLQNESIKIGDPLLLSCQVSVPPWPKSVAWYNSEGRINDEISGSRYRQ 417

Query: 601  MADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKA 660
            MADGLGGY +E+   EA D GEWKCVAT   G    S   V + +PK++RKPRF+++LKA
Sbjct: 418  MADGLGGYMLEVKPTEAADQGEWKCVATCLDGAISISTCDVKMTIPKHFRKPRFMDTLKA 477

Query: 661  VMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGSYCCVAKNVMGKAE 720
            V+T++GLVSFECKVVG PTP LQWFKD +ELKPGDVYQLTGT+SLGSYCC+AKN MG+A 
Sbjct: 478  VLTEEGLVSFECKVVGSPTPVLQWFKDGQELKPGDVYQLTGTNSLGSYCCIAKNCMGEAR 537

Query: 721  SSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSI-SPEPK 779
            SS +LT+EDI + L++E++  L+  ++APKFI GLKS +A VNE F+FTVQ+S+ +P P 
Sbjct: 538  SSAELTVEDIESQLNDEERNQLILRSQAPKFIHGLKSAEARVNEPFRFTVQISVTTPLPT 597

Query: 780  VSWFRDDQQV-VESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
            +SW+RDDQ +  E +    LKE LGV HL I  +E  DQAEWKC+ATN+FG S+TSCFLK
Sbjct: 598  LSWYRDDQPLDNEPERYVALKENLGVGHLDITRVEFMDQAEWKCVATNEFGHSVTSCFLK 657

Query: 839  LNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISG 898
            L +PKH+KKPKFLE L+AVLSE GAVNLECKVIGVP P LKW+KDG ELK GDIH+I SG
Sbjct: 658  LIIPKHFKKPKFLECLRAVLSEEGAVNLECKVIGVPPPVLKWYKDGVELKPGDIHRITSG 717

Query: 899  EDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALIVKDPSLSTIQEEG 958
            EDGTCCLG YTCEA NCMGT +SSA+LLGFED    +K    ++  + + PSLSTI EE 
Sbjct: 718  EDGTCCLGTYTCEARNCMGTVASSASLLGFED----QKTRAQQRMELARQPSLSTIHEER 773

Query: 959  TSEIYDTP---MASIEER-EISFSFDGKEVSVSLYETPDLTEEEAIKVVEMYADELSEHI 1014
            TS+IYDT      +I+++ E+SFSFDGKEVSVSLYETPDLTEEEAI++VEMYAD+LSEH+
Sbjct: 774  TSQIYDTAGDQSLTIDDKGEVSFSFDGKEVSVSLYETPDLTEEEAIQIVEMYADQLSEHV 833

Query: 1015 SDKNMIELPPLRFTKESSRSQNIQMEAVVIDVDHK-GTTEDDDLRTDAGLDEI 1066
            S+ N++ELPPLRF KE+S S N+ MEAVV+DV     T E+ DLRT+A ++EI
Sbjct: 834  SEHNIVELPPLRFVKETSTSGNLLMEAVVVDVSENFFTPEEQDLRTEADVEEI 886

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195436340|ref|XP_002066126.1| GK22102 [Drosophila willistoni] gi|194162211|gb|EDW77112.1| GK22102 [Drosophila willistoni]

 Score =  939 bits (2426), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/798 (56%), Positives = 592/798 (74%), Gaps = 19/798 (2%)

Query: 284  FSFRAQGDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK-FELS 341
            +  R++G+ PI   +RFR        +L +  V+R+D G Y++ A  +S     +  EL 
Sbjct: 28   YRKRSRGEIPIENSDRFRITQTSNAVQLAVEHVQREDAGHYTLIARTKSNDVVRRHVELI 87

Query: 342  VE--SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQ 399
            VE  S   D P F+RRL D++VKVGTR RLL EIRS T++K+ WYRNDR++ EN      
Sbjct: 88   VEDRSMGEDPPVFVRRLVDLSVKVGTRTRLLTEIRSSTDLKLTWYRNDRRVCENDRITEI 147

Query: 400  HDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILT 459
            ++G F+++++S V+L D G+W  +AEN  GR+ C   L+VLVPKAYK P F +EL A+LT
Sbjct: 148  NEGTFHYLEVSPVTLEDGGQWMLMAENLGGRNSCLGTLNVLVPKAYKTPEFVEELRAVLT 207

Query: 460  EQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAA 519
            EQGTVSLECKV+G+PTP L W+KD+K+IKAGDIFALTAN  DP+SLGTYTCEA NCMG  
Sbjct: 208  EQGTVSLECKVVGVPTPHLRWFKDSKEIKAGDIFALTANADDPTSLGTYTCEARNCMGVT 267

Query: 520  FSTSRV--IARGQQ--SFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVL 575
            +S+S+V  + RG +  S    D+V  NS     P PIF  E+ ++  +IG + IL CQV+
Sbjct: 268  YSSSKVHVVGRGSREGSLKPADNVSNNS-----PPPIFTNELRDMSVRIGETIILGCQVV 322

Query: 576  VPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQ 635
            VPPWP+S+ WYN +G VE SD+Y ++ DGLG Y IEI   E+ D GEWKCV TS  G   
Sbjct: 323  VPPWPKSVAWYNTDGRVETSDRYKLIEDGLGVYMIEIKPSESCDAGEWKCVVTSFEGCVG 382

Query: 636  FSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD 695
             S + V + +PKNYRKPRF+ESL+AV+T++GLVSFECKVVGFPTP L+WFKD  ELKPGD
Sbjct: 383  ISTSVVTMDIPKNYRKPRFMESLRAVLTEEGLVSFECKVVGFPTPVLKWFKDGHELKPGD 442

Query: 696  VYQLTGTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL 755
            VYQLTGT+SLG+YCC+A+N MG+  S+  LT+EDI+N L++E++L+    N+AP+F+ GL
Sbjct: 443  VYQLTGTNSLGTYCCIARNCMGETSSTAVLTVEDIQNQLTDEERLVFTHQNQAPRFLTGL 502

Query: 756  KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVA 815
            KS  A +NE F+F V V  SP+P ++WFRD+  +  +D     +       + I A+E  
Sbjct: 503  KSTDAKINEPFQFKVVVRASPDPVLTWFRDELPIDPNDRYNHYRGEDEEWLMDIKAVEFV 562

Query: 816  DQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQ 875
            DQAEWKC+A NDFG SITSCFLKL +P+HYKKP+FLE L+AVL++ GAVNLECKVIGVPQ
Sbjct: 563  DQAEWKCVAVNDFGTSITSCFLKLQIPRHYKKPRFLECLRAVLTDEGAVNLECKVIGVPQ 622

Query: 876  PTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFED--KSQ 933
            P LKW+KDG ELK GDIH+IISG+DGTCCLG YTCEA NCMG  +SSA+LLGFED  ++Q
Sbjct: 623  PVLKWYKDGVELKPGDIHRIISGQDGTCCLGTYTCEARNCMGVVASSASLLGFEDAQRNQ 682

Query: 934  IEKAEEG-KKALIVKDPSLSTIQEEGTSEIYDTPMASI---EEREISFSFDGKEVSVSLY 989
             +K E+   +  + ++ SLSTIQEE TS++Y+TP+  I   ++ ++SFSFDGKEVSVSLY
Sbjct: 683  SQKNEQQVHENELQRNFSLSTIQEERTSQLYETPVGDITIDDKGDVSFSFDGKEVSVSLY 742

Query: 990  ETPDLTEEEAIKVVEMYADELSEHISDKNMIELPPLRFTKESSRSQNIQMEAVVIDVDHK 1049
            ETPDLTEEEA+K+VEMYAD++SEH+++ N++ELPPLRF KE+S+S  + MEAVVID+  +
Sbjct: 743  ETPDLTEEEALKIVEMYADQISEHVTEHNIVELPPLRFVKETSQSGKLLMEAVVIDIAPE 802

Query: 1050 GTTEDDDLRTDAGLDEIS 1067
              + +DDLRT+A +D+IS
Sbjct: 803  YFSHEDDLRTEADMDDIS 820

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1075
FB|FBgn0265045	9270	Strn-Mlck "Stretchin-Mlck" [Dr	0.731	0.084	0.555	2.3e-236
UNIPROTKB|Q8WZ42	34	TTN "Titin" [Homo sapiens (tax	0.712	22.52	0.240	1.4e-46
MGI|MGI:98864	35	Ttn "titin" [Mus musculus (tax	0.712	21.88	0.237	6.1e-49
UNIPROTKB|F1PV45	35	F1PV45 "Uncharacterized protei	0.624	19.17	0.243	1.5e-56
WB|WBGene00006820	8081	unc-89 [Caenorhabditis elegans	0.672	0.089	0.247	2.8e-52
ZFIN|ZDB-GENE-030113-2	32	ttna "titin a" [Danio rerio (t	0.767	25.78	0.229	7.3e-42
UNIPROTKB|F1N757	34	F1N757 "Uncharacterized protei	0.691	21.85	0.232	1.1e-41
UNIPROTKB|F1PXF9	5637	HMCN1 "Uncharacterized protein	0.624	0.119	0.247	9.5e-42
WB|WBGene00006436	18	ttn-1 [Caenorhabditis elegans	0.328	19.61	0.291	2.4e-41
UNIPROTKB|F1S0Y1	4061	F1S0Y1 "Uncharacterized protei	0.625	0.165	0.270	2.8e-47

FB|FBgn0265045 Strn-Mlck "Stretchin-Mlck" [Drosophila melanogaster (taxid:7227)]

 Score = 2308 (817.5 bits), Expect = 2.3e-236, Sum P(2) = 2.3e-236
 Identities = 444/799 (55%), Positives = 587/799 (73%)

Query:   287 RAQGDHPIFGN-RFRAINRDGRTELNIRRVRRDDGGRYSVTA-SNESGYSTAKFELSVE- 343
             R++G+ PI  + RFR        +L +  V+R+D G Y++ A +          EL VE 
Sbjct:    31 RSRGEIPIENSDRFRITATSNAVQLAVEHVQREDAGHYTLFARTKRQDVVRRHVELIVED 90

Query:   344 -SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDG 402
              S   D P F+RRL D++VKVGTR RLL EIRS T++K+ WYRNDR++  N      ++G
Sbjct:    91 RSTGDDPPVFVRRLPDLSVKVGTRTRLLTEIRSSTDLKLTWYRNDRRVCANDRITEVNEG 150

Query:   403 NFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG 462
              F+++++S V+L D G+W  +AEN  GR+ C   L+VLVPKAYK P F +EL A+LTEQG
Sbjct:   151 TFHYLEISPVTLDDGGQWMLMAENFGGRNSCLGTLNVLVPKAYKTPEFVEELRAVLTEQG 210

Query:   463 TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFST 522
             TVSLECKV+G+PTP L W+KD+K+IKAGDIFALTAN  DP+SLGTYTCEA NCMG  +S+
Sbjct:   211 TVSLECKVVGVPTPHLRWFKDSKEIKAGDIFALTANADDPTSLGTYTCEARNCMGVTYSS 270

Query:   523 SRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRS 582
             S+V   G+ S  +    P +S+    P PIF  E+ ++   IG + IL CQV+VPPWP+S
Sbjct:   271 SKVHVVGRGS-REGSLKPADSVASNAPPPIFTNELRDMSLLIGETIILGCQVVVPPWPKS 329

Query:   583 IYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVH 642
             + WYN  G VE +++Y ++ DGLG Y IE+   E+ D GEWKCV TS  G    S   V 
Sbjct:   330 VCWYNASGRVETAERYKLIEDGLGVYMIEVKPSESCDAGEWKCVVTSFDGSMGISTCSVA 389

Query:   643 VLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGT 702
             + +P+NYRKPRF+ESL+AV+T++GLVSFECKVVGFPTP L+WFKD  ELKPGDVYQLTGT
Sbjct:   390 MDIPRNYRKPRFMESLRAVLTEEGLVSFECKVVGFPTPVLKWFKDGHELKPGDVYQLTGT 449

Query:   703 SSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLL--LTNNKAPKFIEGLKSCQA 760
             +SLG+YCC+A+N MG+  S+  LT+EDI+N L++E++L+      N+APKF+ GLKS  A
Sbjct:   450 NSLGTYCCIARNCMGETSSTAVLTVEDIQNQLTDEERLVFNQQNQNQAPKFLIGLKSTDA 509

Query:   761 TVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEW 820
              +NE F+F V V  +P P +SWFRD+  +  ++     +       L I ++E  DQAEW
Sbjct:   510 KINEPFQFKVVVKATPNPILSWFRDELPIDPNERYNHYRGENEDWLLDIKSVEFVDQAEW 569

Query:   821 KCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKW 880
             KC+A NDFG SITSCFLKL +P+HYKKP+FLE L+AVL+E GAVNLECKVIGVPQP LKW
Sbjct:   570 KCVAVNDFGTSITSCFLKLQIPRHYKKPRFLECLRAVLTEEGAVNLECKVIGVPQPALKW 629

Query:   881 FKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFED--KSQIEKAE 938
             +KDG ELK GDIH+IISG+DGTCCLG YTCEA NCMG  +SSA+LLGFED  +SQ +K+E
Sbjct:   630 YKDGVELKPGDIHRIISGQDGTCCLGTYTCEAKNCMGIVASSASLLGFEDAQRSQQQKSE 689

Query:   939 EGKKALIVKDPSLSTIQEEGTSEIYDTPMASI---EEREISFSFDGKEVSVSLYETPDLT 995
             +  +  + ++ SLSTIQEE TS++Y+TP+  I   E+ ++SFSFDGKEVSVSLYETPDLT
Sbjct:   690 QLHENELQRNYSLSTIQEERTSQLYETPVGDITIDEKGDVSFSFDGKEVSVSLYETPDLT 749

Query:   996 EEEAIKVVEMYADELSEHISDKNMIELPPLRFTKESSRSQNIQMEAVVIDVDHKGTTEDD 1055
             EEEA+K+VEMYAD++SEH+++ N++ELPPLRF KE+S+S  + MEAVVID+  +  T +D
Sbjct:   750 EEEALKIVEMYADQISEHVTEHNIVELPPLRFVKETSQSGKLLMEAVVIDISPEYFTVED 809

Query:  1056 DLRTDAGLDEIS-EDLMLH 1073
             D+RT+A +D+IS  ++ +H
Sbjct:   810 DMRTEADMDDISINEITVH 828

GO:0006468 "protein phosphorylation" evidence=IEA;ISS;NAS

GO:0004687 "myosin light chain kinase activity" evidence=ISS;IDA

GO:0004683 "calmodulin-dependent protein kinase activity" evidence=IDA

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=NAS

GO:0005524 "ATP binding" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|Q8WZ42 TTN "Titin" [Homo sapiens (taxid:9606)]

 Score = 438 (159.2 bits), Expect = 1.4e-46, Sum P(3) = 1.4e-46
 Identities = 206/856 (24%), Positives = 356/856 (41%)

Query:   242 APA-FIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 300
             APA F++RL+D +++ G           P  ++  F     I  +++  G +     R  
Sbjct:  8793 APAKFVKRLNDYSIEKG----------KPLILEGTFTGTPPISVTWKKNGINVTPSQRCN 8842

Query:   301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIA 360
                 +    L I     +D G+Y+    N SG    K   S +  + + P F+++L  + 
Sbjct:  8843 ITTTEKSAILEIPSSTVEDAGQYNCYIENASG----KDSCSAQILILEPPYFVKQLEPVK 8898

Query:   361 VKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRW 420
             V VG  A L  ++    EI + WY+ D KL     Y+     N   +  + V + DSG +
Sbjct:  8899 VSVGDSASLQCQLAGTPEIGVSWYKGDTKLRPTTTYKMHFRNNVATLVFNQVDINDSGEY 8958

Query:   421 TCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGT-VSLECKVMGIPTPQLI 479
              C AEN+VG    S  L+V   K    P F+++L  +    G  V  +C + G     + 
Sbjct:  8959 ICKAENSVGEVSASTFLTVQEQKL--PPSFSRQLRDVQETVGLPVVFDCAISGSEPISVS 9016

Query:   480 WYKDNKKIK-AGDI---F---ALTAN--PKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQ 530
             WYKD K +K + ++   F     T N    D S  G Y+C A N +G+A S++R+I    
Sbjct:  9017 WYKDGKPLKDSPNVQTSFLDNTATLNIFKTDRSLAGQYSCTATNPIGSASSSARLI---- 9072

Query:   531 QSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG 590
                 +  + PF  +     AP        V A +G SA  EC V     P  + W     
Sbjct:  9073 --LTEGKNPPFFDIRL---AP--------VDAVVGESADFECHV-TGTQPIKVSWAKDSR 9118

Query:   591 VVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV---LMPK 647
              + +  KY I       + + +  ++  D G++ C A +  G K    A +++   L+P 
Sbjct:  9119 EIRSGGKYQISYLENSAH-LTVLKVDKGDSGQYTCYAVNEVG-KDSCTAQLNIKERLIPP 9176

Query:   648 NYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGS 707
             ++ K R  E+++   T+      E +V G    T+ W+K+N E++P    ++T  ++   
Sbjct:  9177 SFTK-RLSETVEE--TEGNSFKLEGRVAGSQPITVAWYKNNIEIQPTSNCEITFKNNT-L 9232

Query:   708 YCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFK 767
                V K  M  A   T     D  + L     +++    K P F + L     +  E  +
Sbjct:  9233 VLQVRKAGMNDAGLYTCKVSNDAGSALCTSS-IVIKEPKKPPVFDQHLTPVTVSEGEYVQ 9291

Query:   768 FTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND 827
              +  V  S   ++ W +  +++  SD       + G   L++  +  AD  ++ C A+N 
Sbjct:  9292 LSCHVQGSEPIRIQWLKAGREIKPSDRCSFSFAS-GTAVLELRDVAKADSGDYVCKASNV 9350

Query:   828 FGQSITSCFLKLN----VPKHYKKPK------FLEELKAV-LSEGGAVNLECKVIGVPQP 876
              G   T   + +     V    KK        F+ E +++ + E        KV G P P
Sbjct:  9351 AGSDTTKSKVTIKDKPAVAPATKKAAVDGRLFFVSEPQSIRVVEKTTATFIAKVGGDPIP 9410

Query:   877 TLKWFKDG-RELKAGD---IHKI-----ISGEDGTCC-LGIYTCEAHNCMGTTSSSAALL 926
              +KW K   R+L  G    IH+      +   D T    G+Y C A N  G   S+  L 
Sbjct:  9411 NVKWTKGKWRQLNQGGRVFIHQKGDEAKLEIRDTTKTDSGLYRCVAFNEHGEIESNVNLQ 9470

Query:   927 GFEDKSQIEKAEEGKKALIVKDPSLST-IQEEGTSEIYDTPMASIEEREIS-----FSFD 980
               E K Q EK E   +A++ K P L     EE   +I +  + +++ +E       +   
Sbjct:  9471 VDERKKQ-EKIEGDLRAMLKKTPILKKGAGEEEEIDIMEL-LKNVDPKEYEKYARMYGIT 9528

Query:   981 GKEVSVSLYETPDLTEEEAIKVVEMYADELSEHISDKNMIELPPLRFTKESSRSQNIQME 1040
                  +  +E    ++EE    +E+   E SE   +K   EL  + F ++  R    +  
Sbjct:  9529 DFRGLLQAFELLKQSQEEETHRLEIEEIERSER-DEKEFEEL--VSFIQQ--RLSQTEPV 9583

Query:  1041 AVVIDVDHKGTTEDDD 1056
              ++ D++++   +D+D
Sbjct:  9584 TLIKDIENQTVLKDND 9599

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0031430 "M band" evidence=IEA;IDA

GO:0043056 "forward locomotion" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IMP;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0030018 "Z disc" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0006936 "muscle contraction" evidence=NAS;TAS

GO:0005516 "calmodulin binding" evidence=TAS;IPI

GO:0006941 "striated muscle contraction" evidence=TAS

GO:0002020 "protease binding" evidence=IPI

GO:0019899 "enzyme binding" evidence=IPI

GO:0002576 "platelet degranulation" evidence=TAS

GO:0005576 "extracellular region" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0030049 "muscle filament sliding" evidence=TAS

GO:0030168 "platelet activation" evidence=TAS

GO:0042802 "identical protein binding" evidence=IPI

GO:0051592 "response to calcium ion" evidence=IDA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005865 "striated muscle thin filament" evidence=IDA

GO:0043621 "protein self-association" evidence=IDA

GO:0030240 "skeletal muscle thin filament assembly" evidence=IMP

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IMP

GO:0048739 "cardiac muscle fiber development" evidence=IMP

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IMP

GO:0031674 "I band" evidence=IDA

GO:0055003 "cardiac myofibril assembly" evidence=IMP

GO:0000794 "condensed nuclear chromosome" evidence=IDA

GO:0007076 "mitotic chromosome condensation" evidence=IEP

GO:0051015 "actin filament binding" evidence=IDA

GO:0042805 "actinin binding" evidence=IDA;IPI

GO:0050790 "regulation of catalytic activity" evidence=IMP

GO:0045859 "regulation of protein kinase activity" evidence=IMP

GO:0060048 "cardiac muscle contraction" evidence=IMP

GO:0051371 "muscle alpha-actinin binding" evidence=IPI

GO:0035995 "detection of muscle stretch" evidence=TAS

GO:0031433 "telethonin binding" evidence=ISS;IPI

GO:0003300 "cardiac muscle hypertrophy" evidence=IMP

GO:0048769 "sarcomerogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

MGI|MGI:98864 Ttn "titin" [Mus musculus (taxid:10090)]

 Score = 436 (158.5 bits), Expect = 6.1e-49, Sum P(3) = 6.1e-49
 Identities = 203/856 (23%), Positives = 350/856 (40%)

Query:   242 APA-FIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 300
             APA F++RL+D +++ G           P  ++  F     I  +++  G + I   R  
Sbjct:  8754 APAIFVKRLNDYSIEKG----------KPLILEGTFSGTPPISVTWKKNGINVIASQRCN 8803

Query:   301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIA 360
                 +    L I     +D G+Y+    N SG    K   S +  + + P F+++L  + 
Sbjct:  8804 ITTTEKSAILEILSSTVEDSGQYNCYIENASG----KDSCSAQILILEPPYFVKQLEPVK 8859

Query:   361 VKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRW 420
             V VG  A L  ++    EI + WY+ D KL      +     N   +  + V   DSG +
Sbjct:  8860 VTVGDSASLQCQLAGTPEIGVSWYKGDTKLRPTATCKMHFKNNVATLVFTQVDSSDSGEY 8919

Query:   421 TCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGT-VSLECKVMGIPTPQLI 479
              C AEN+VG    S  L+V   K    P F+++L  +    G  V  EC V G     + 
Sbjct:  8920 ICRAENSVGEVSSSTFLTVQEQKL--PPSFSRQLRDVQETVGLPVVFECAVSGSEPISVS 8977

Query:   480 WYKDNKKIKAG---------DIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQ 530
             WYKD K +K           +I  L     D S  G Y+C A N +G+A S +++I    
Sbjct:  8978 WYKDGKPLKDSPNIQTSFLDNIATLNIFKTDRSLSGQYSCTATNPIGSASSGAKLI---- 9033

Query:   531 QSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG 590
                 +  + PF  + P  P          + A +G SA LEC V     P  + W     
Sbjct:  9034 --LTEGKNPPFFDI-PLAP----------MDAVVGESADLECHV-TGTQPIKVTWAKDNR 9079

Query:   591 VVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV---LMPK 647
              + +   Y I       + + I  ++  D G++ C A +  G K    A +++   L+P 
Sbjct:  9080 EIRSGGNYQISYLENSAH-LTIVKVDKGDSGQYTCYAVNEVG-KDSCTAQLNIKERLIPP 9137

Query:   648 NYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGS 707
             ++ K +  E+++   T+      E +V G    T+ W+K+N E+ P    ++   ++   
Sbjct:  9138 SFTK-KLSETVEE--TEGNSFKLEGRVAGSQPITVAWYKNNVEIHPTSNCEIMFKNN-AL 9193

Query:   708 YCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFK 767
                V +  M  A   T     D  + L     +++    K P F + L    A+  +  +
Sbjct:  9194 LLQVKRASMADAGLYTCKATNDAGSALCTSS-IVIKEPKKPPVFDQHLAPVTASEGDSVQ 9252

Query:   768 FTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND 827
              +  V  S   ++ W +  ++V  SD       + G   L++     AD  ++ C A+N 
Sbjct:  9253 LSCHVQGSEPIRIQWLKAGREVKPSDRCSFSFAS-GTAMLELKETAKADSGDYVCKASNV 9311

Query:   828 FGQSITSCFLKLN-----VPKHYK-----KPKFLEELKAV-LSEGGAVNLECKVIGVPQP 876
              G   + C + +       P   K     K  F+ E +++ + E        KV G P P
Sbjct:  9312 AGSDTSKCKVTIKEKPAAAPAAKKAAVDGKLFFVSEPQSIRVVEKTTATFIAKVGGDPIP 9371

Query:   877 TLKWFKD--------GREL--KAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALL 926
              +KW K         GR L  + GD  K+   +      G+Y C A N  G   S+  L 
Sbjct:  9372 NVKWTKGKWRQLNQGGRILIHQKGDEAKLEIRDTTKTDSGLYRCVAFNKHGEIESNVNLQ 9431

Query:   927 GFEDKSQIEKAEEGKKALIVKDPSLSTIQ-EEGTSEIYDTPMASIEEREIS-----FSFD 980
               E K Q EK E   +A++ K P+L     EE   +I +  + +++ +E       +   
Sbjct:  9432 VDERKKQ-EKIEGDLRAMLKKTPALKKGSGEEEEIDIMEL-LKNVDPKEYEKYARMYGIT 9489

Query:   981 GKEVSVSLYETPDLTEEEAIKVVEMYADELSEHISDKNMIELPPLRFTKESSRSQNIQME 1040
                  +  +E    ++EE    +E+   E SE   +K   EL  + F ++  R    +  
Sbjct:  9490 DFRGLLQAFELLKQSQEEETHRLEIEELEKSER-DEKEFEEL--VAFIQQ--RLTQTEPV 9544

Query:  1041 AVVIDVDHKGTTEDDD 1056
              ++ D++++   +D+D
Sbjct:  9545 TLIKDIENQTVLKDND 9560

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000794 "condensed nuclear chromosome" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0002020 "protease binding" evidence=ISO

GO:0003007 "heart morphogenesis" evidence=IMP

GO:0003300 "cardiac muscle hypertrophy" evidence=ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISO

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0005509 "calcium ion binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005859 "muscle myosin complex" evidence=TAS

GO:0005865 "striated muscle thin filament" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006936 "muscle contraction" evidence=IMP

GO:0007512 "adult heart development" evidence=IMP

GO:0008307 "structural constituent of muscle" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0019899 "enzyme binding" evidence=ISO

GO:0030017 "sarcomere" evidence=IDA

GO:0030018 "Z disc" evidence=ISO;IDA

GO:0030240 "skeletal muscle thin filament assembly" evidence=ISO

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=ISO

GO:0030506 "ankyrin binding" evidence=IPI

GO:0031430 "M band" evidence=ISO;IDA

GO:0031433 "telethonin binding" evidence=ISO

GO:0031672 "A band" evidence=IDA

GO:0031674 "I band" evidence=ISO;IDA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0042802 "identical protein binding" evidence=ISO

GO:0042805 "actinin binding" evidence=ISO

GO:0043056 "forward locomotion" evidence=IMP

GO:0043621 "protein self-association" evidence=ISO

GO:0045214 "sarcomere organization" evidence=ISO;IMP;TAS

GO:0045859 "regulation of protein kinase activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048739 "cardiac muscle fiber development" evidence=ISO

GO:0048769 "sarcomerogenesis" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=ISO

GO:0051015 "actin filament binding" evidence=ISO

GO:0051371 "muscle alpha-actinin binding" evidence=ISO

GO:0051592 "response to calcium ion" evidence=ISO

GO:0055002 "striated muscle cell development" evidence=IMP

GO:0055003 "cardiac myofibril assembly" evidence=ISO;IMP

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=ISO

GO:0060048 "cardiac muscle contraction" evidence=ISO

UNIPROTKB|F1PV45 F1PV45 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 459 (166.6 bits), Expect = 1.5e-56, Sum P(3) = 1.5e-56
 Identities = 177/727 (24%), Positives = 319/727 (43%)

Query:   346 VPDAPAFIRRLHDIAV-KVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQH-DGN 403
             V + P FI++   + V + G       +I    EI++ WY +  ++   K +     DG 
Sbjct:  5768 VKEPPQFIKKPSPVLVLRNGQSTTFECQITGTPEIRVSWYLDGNEITAIKKHGISFIDGL 5827

Query:   404 FYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAI-LTEQG 462
               F  +S   + +SG + C A N  G + CS EL V   KA + P F +EL+ + + +  
Sbjct:  5828 ATF-QISGARVENSGTYVCEARNDAGTASCSIELKV---KALEPPTFIRELKPVEVVKDS 5883

Query:   463 TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFST 522
              V LEC+V G    ++ W ++NK+I++   + LT        +  ++     C  +    
Sbjct:  5884 DVQLECEVAGTAPFEVTWLRNNKEIRSSKKYTLT------DRVSVFSLHITKCDPSDTGD 5937

Query:   523 SRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRS 582
              + I   +     +      SL  P   P FIK++ENV   + +S   +  V   P P S
Sbjct:  5938 YQCIVSNEGGSCSSSTKV--SLKEP---PSFIKKIENVTTVLKSSGTFQSTVAGSP-PIS 5991

Query:   583 IYWYNKEGVVEASDKYHI-MADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYV 641
             I W   + ++E  D  HI   + +   +++I  ++    G + C A + SGV++    Y 
Sbjct:  5992 ITWLKDDHILEEDDNVHISFVNNVA--TLQIRAVDNGHSGRYTCQAKNESGVER---CYA 6046

Query:   642 HVLMPKNYRKPRFVESLKAV-MTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT 700
              +L+ +     + +E  K+V +T+   V+ EC V G P   ++W KD +++ P   + ++
Sbjct:  6047 FLLVQE---PAQILEKAKSVDVTEKDPVTLECVVAGTPELKVKWLKDGKQIVPSRYFSMS 6103

Query:   701 GTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQA 760
               +++ S+    ++VM +        +E+     S +  L +L  +  P F + L     
Sbjct:  6104 FENNVASFRI--QSVMKQDSGQYTFKVENDFGSSSCDAYLRVLDQDIPPSFTKKLTKMDK 6161

Query:   761 TVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEW 820
              +    +   +VS S      WF+D ++V  S   +++     V  L+++ LE+ D A +
Sbjct:  6162 ILGSSIRMECKVSGSLPISAQWFKDGKEVSTSAKYRLVCHENTVS-LEVNNLELEDTANY 6220

Query:   821 KCIATNDFGQSITSCFLKLNVPKHYKKPKFL---EELKAVLSEGGAVNLECKVIGVPQPT 877
              C  +N  G    +C   L V    + P FL   E  +A+      V  +  + G P   
Sbjct:  6221 TCKVSNVAGDD--ACSGILTVKASIEPPSFLVKPERQQAI--PDSTVEFKAVLKGTPPFK 6276

Query:   878 LKWFKDGRELKAGDIHKI-ISGEDGTCCL--------GIYTCEAHNCMGTTSSSAALLGF 928
             +KWFKD  EL +G    I + G      L        G YTC+  N +G+ S +  LL  
Sbjct:  6277 IKWFKDDVELASGPTCFIGLEGSTSFLNLYSVDASKTGQYTCQVTNDVGSDSCTTMLLVT 6336

Query:   929 EDKSQIEKAEEGKKALIVK--DPSLSTIQEEGTSEIYDTPMASIEEREISFSFDGKEV-S 985
             E    ++K E  K   IVK  D +    +  G+ EI      +  E + S  +    + S
Sbjct:  6337 EPPKFVKKLEASK---IVKAGDSARLECKITGSPEIRVVWYRNEHELQASDKYRMTFIDS 6393

Query:   986 VSLYETPDL-TEEEAIKVVEMYADELSEHISDKNMIELPPLRFTKESSRSQNIQMEAVVI 1044
             V++ +  +L TE+    + E      S   S K +++ PP+ F+      + ++   V +
Sbjct:  6394 VAVLQMNNLGTEDSGDFICEAQNPAGSTSCSTKVIVKEPPV-FSSFPPVVETLKNTEVSL 6452

Query:  1045 DVDHKGT 1051
             + +  GT
Sbjct:  6453 ECELSGT 6459

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

WB|WBGene00006820 unc-89 [Caenorhabditis elegans (taxid:6239)]

 Score = 514 (186.0 bits), Expect = 2.8e-52, Sum P(4) = 2.8e-52
 Identities = 194/784 (24%), Positives = 327/784 (41%)

Query:   198 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVG 257
             D + +L I+   RDD   Y +   N +G + +  +L+V+         ++ L D  V  G
Sbjct:  4735 DTKYQLVIKNAVRDDADTYKIVLENTAGEAESSAQLTVKKAKAGLCKIVKGLEDQVVAKG 4794

Query:   258 TRARLLVEIRS-PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVR 316
              +    V+I+  P +++   D N  I     + G + I       I+ D    L I    
Sbjct:  4795 AKMVFEVKIQGEPEDVRWLRDAN-VI-----SAGANAII----EKID-DTTYRLIIPSAD 4843

Query:   317 RDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSP 376
               D G Y+V   NESG    K +   + +V + P  +R L +I +  G      VE+ +P
Sbjct:  4844 LKDAGEYTVEVINESG----KAKSDAKGEVDEKPEIVRGLENIEIPEGDDDVFKVEVSAP 4899

Query:   377 TEIKIHWYRNDRKLEENKIYRTQHDG-NFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC 435
                ++ WY+ND++++ N     +  G   Y + ++   L D   +  +  NA G    S 
Sbjct:  4900 VR-QVKWYKNDQEIKPNSHLEAKKIGPKKYELAINRAQLDDGADYKVVLSNAAGDCDSSA 4958

Query:   436 ELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA-GDIFA 494
              L+V+ P   K     K+++  + E   V L+ KV GIP   + WYK+ +++K   D F 
Sbjct:  4959 ALTVVKPNVLKIVDGLKDVD--VEEPQPVELKVKVEGIPKV-IKWYKNGQELKPDADGFK 5015

Query:   495 LTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAP--I 552
                 P+      T    +    G A+    V+   +        V   S     P     
Sbjct:  5016 FEEKPESGEFSLTIP-SSKKSDGGAYRV--VLGNDKGEVYSGSVVHVKSAKSSEPTSGAN 5072

Query:   553 FIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS-IE 611
             F+  +++ + + G    L+C +   P+P  I W  K+GVV   D    M   L G + + 
Sbjct:  5073 FLSPLKDTEVEEGDMLTLQCTIAGEPFPEVI-W-EKDGVVLQKDDRITMRVALDGTATLR 5130

Query:   612 INYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLK--AVMTDDGLVS 669
             I   +  D G+++  A + +G              +   KP+FV  LK  A +  D    
Sbjct:  5131 IRSAKKSDIGQYRVTAKNEAGSATSDCKVTVTEQGEQPSKPKFVIPLKTGAALPGDKK-E 5189

Query:   670 FECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGSYCCVAKNV----------MGKA 719
             F  KV G P PTLQWF +   +K  D   L   +  G+YC   ++V          + K 
Sbjct:  5190 FNVKVRGLPKPTLQWFLNGIPIKFDDRITLDDMAD-GNYCLTIRDVREEDFGTLKCIAKN 5248

Query:   720 ESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPK 779
             E+ T  T+ + +     +D          P+F   L   +  V +       V  +P  +
Sbjct:  5249 ENGTDETVCEFQQGAGHDDGSRD-DLRYPPRFNVPLWDRRIPVGDPMFIECHVDANPTAE 5307

Query:   780 VSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL 839
             V WF+D +++  + + +I     G C +KI   E +D   + C+A N+ GQ+ T    ++
Sbjct:  5308 VEWFKDGKKIEHTAHTEIRNTVDGACRIKIIPFEESDIGVYMCVAVNELGQAETQATYQV 5367

Query:   840 NVPKHYKK-------PKFLEELKAVLSEGGA-VNLECKVIGVPQPTLKWFKDGRELKAGD 891
              + +H ++       PK    L+     GG  + L CKV  +P+ ++ W+KDG  L+A  
Sbjct:  5368 EILEHVEEEKRREYAPKINPPLEDKTVNGGQPIRLSCKVDAIPRASVVWYKDGLPLRADS 5427

Query:   892 IHKIISGEDGTCCLGIY--TCE---AHNCMGTTSSSAALLGFEDKSQIEKAE---EGKKA 943
                I   EDGT  L I   T E   A+ C+ T +            ++ K E   EG++ 
Sbjct:  5428 RTSIQYEEDGTATLAINDSTEEDIGAYRCVATNAHGTINTSCSVNVKVPKQEVKKEGEEP 5487

Query:   944 LIVK 947
                K
Sbjct:  5488 FFTK 5491

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005021 "vascular endothelial growth factor-activated receptor activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0048010 "vascular endothelial growth factor receptor signaling pathway" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0031672 "A band" evidence=IDA

GO:0017048 "Rho GTPase binding" evidence=IPI

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IMP

GO:0031034 "myosin filament assembly" evidence=IMP

GO:0031430 "M band" evidence=IDA

GO:0019902 "phosphatase binding" evidence=IPI

ZFIN|ZDB-GENE-030113-2 ttna "titin a" [Danio rerio (taxid:7955)]

 Score = 447 (162.4 bits), Expect = 7.3e-42, Sum P(4) = 7.3e-42
 Identities = 213/927 (22%), Positives = 375/927 (40%)

Query:     5 TPQLI--WYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARG--- 59
             TP+L   W+KD  ++ +G  + +T + K  SSL   + E  +     FS    +      
Sbjct:  6774 TPELKPKWFKDGVELSSGKKYKITFS-KMISSLKLLSTERSDTGEYTFSIKNEVGSDSCA 6832

Query:    60 -QQSFLDNDDVP-FNRAQGD-HPIFGNRFRA-INRDGRTELNI----RRVRRDDGGRYSV 111
              Q + LD    P F+R   D   I G          G   L I      V    G  Y +
Sbjct:  6833 MQLTVLDKIVPPLFSRKLKDTQSIVGKSMELDCKASGSAPLTISWFHNEVEIMSGPNYEI 6892

Query:   112 TASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVE-----IRSPTEIK 166
             T +  +   T K       ++ D+  +  +  + A    T A L+V+     + +P  ++
Sbjct:  6893 TFTENT--CTLKVPTL---KLSDSGTYKCKAVNSAGAAETSASLVVKEPPSFVTTPQPVE 6947

Query:   167 CQFDLNNTIPFSFRAQGDHPIFGNRFRAINR--DGRTELNIRRVRRDDG--GRYSVTASN 222
                    T+ F+   QG  P+    FR       GR+   I  +R D      +++  S+
Sbjct:  6948 AL--PGTTVTFTATVQGSTPMKLKWFRGSKEIVSGRS-CEIA-LRGDTAILELHNIDKSH 7003

Query:   223 ESGYS------TAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQF 276
                Y+        K    V   V +A  F+++L +++V++G    L++E        C +
Sbjct:  7004 AGEYTCQIINDAGKENCPVNLFVKEAAHFVKKLKNLSVEMGKS--LILE--------CTY 7053

Query:   277 DLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTA 336
               +  I   +   G       ++     +    L      ++  G+Y+   SN++G+   
Sbjct:  7054 AGSPKILVKWHKDGQEIYSSYKYNITTTESSCILECLNSDKEAAGKYTCEVSNDAGHDIC 7113

Query:   337 KFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIY 396
             +  +S+     + P FI  L  + V  G    L  +I    EIKI W++ D K+  +   
Sbjct:  7114 EAAVSIL----EPPFFIESLEPMEVTAGDAVCLKCQIGGTPEIKISWFKADGKVRSSPTC 7169

Query:   397 RTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEA 456
             + +       + L+ V+  D G +TC AEN++G +  SC L+V   K    P F K++ +
Sbjct:  7170 KMEFFKGIACLKLAKVAKSDIGEYTCKAENSIGSATSSCHLTVQDVKT--PPSFPKKITS 7227

Query:   457 ILTEQGT-VSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPK---------DPSSLG 506
             I+  +G  V  EC+V G    ++ W KD + +++   + ++ +           +    G
Sbjct:  7228 IMQIEGQPVQFECRVAGSSPMEVSWLKDGEALRSDSEYTMSFDDNSAVLNIAKGEMRHSG 7287

Query:   507 TYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGT 566
              YTC A N +G+A   +++                 +L  P   P+F K++  V   +G 
Sbjct:  7288 EYTCVATNSVGSASCRAKL-----------------TLQEPRYPPVFDKKLVPVDVSVGD 7330

Query:   567 SAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCV 626
             +  LEC  +    P  + W      +     Y I       + + I   +  D G + C 
Sbjct:  7331 TVELECH-MTGSMPIKVTWSKDHKDIRTGGNYKISCVENTPH-LTILKADKADSGRYSCH 7388

Query:   627 ATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTD-DG-LVSFECKVVGFPTPTLQW 684
             A++  G    S     V + +    P F +     + D +G +V  E +V G    T+ W
Sbjct:  7389 ASNDVGKDSCST---EVSVKERKIPPSFTKKPSTTIEDIEGKVVKIEGRVAGSQPLTVNW 7445

Query:   685 FKDNEELKPGDVYQLTGTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLT 744
             +KD  E+   D Y +T  SSL +  C+ K+ +  ++S T +         +  +  + +T
Sbjct:  7446 YKDGREIFTSDFYDVTFKSSL-AVLCIKKSQL--SDSGTYVCKATNEAGTASFEVSVHIT 7502

Query:   745 NNKAPKFIEGLKSCQATVNEEFKFTVQVSI--SPEPKVSWFRDDQQVVESDNVKILKETL 802
               K P   + L     TVNE    T+   +  SP  K+ W +D +++  S N KI     
Sbjct:  7503 AQKVPPSFD-LPLKPVTVNEGETLTLSCHVRGSPPLKIQWMKDRRELSSSANTKITFVD- 7560

Query:   803 GVCHLKIHALEVADQAEWKCIATNDFGQ---SITSCFLKLNVPKHYKKPK---FLEELKA 856
             G   L++  +   D  ++ C ATN+ G    +        + P+  KK     F+E  K+
Sbjct:  7561 GTATLEMTRVSKTDSGDYLCKATNEAGNKPGAPAPAQAAPSPPQEVKKFDNLFFIEVPKS 7620

Query:   857 V-LSEGGAVNLECKVIGVPQPTLKWFK 882
             V + E G      KV G P P +KW K
Sbjct:  7621 VHIVEKGTATFIAKVGGDPIPNVKWMK 7647

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0000786 "nucleosome" evidence=IEA

GO:0016849 "phosphorus-oxygen lyase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0009190 "cyclic nucleotide biosynthetic process" evidence=IEA

GO:0045214 "sarcomere organization" evidence=IMP

GO:0060047 "heart contraction" evidence=IMP

GO:0008307 "structural constituent of muscle" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

UNIPROTKB|F1N757 F1N757 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 423 (154.0 bits), Expect = 1.1e-41, Sum P(4) = 1.1e-41
 Identities = 198/851 (23%), Positives = 341/851 (40%)

Query:   239 VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFR-AQGDHPIFGN 297
             V +   F++RL D +V+ G          SP  ++  F    T P S    + +  +  +
Sbjct:  7826 VKEPATFVKRLADFSVETG----------SPIVLEATF--TGTPPISVSWMKNEFALTQS 7873

Query:   298 RFRAINRDGR-TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRL 356
             +  +I    + T L I     +D  +YS    NE+G       +SV     + P FI  L
Sbjct:  7874 QNCSITMTEKSTILEILDSTIEDYAQYSCLIENEAGQDICDAVVSVL----EPPYFIEPL 7929

Query:   357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFD 416
               +   +G    L  ++    EI+I WY+   KL     Y+ Q   N   + ++ V   D
Sbjct:  7930 EHVEAVIGEPITLQCKVDGTPEIRISWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSD 7989

Query:   417 SGRWTCLAENAVGRSHCSCELSVLVPKAYKAP-FFTKELEAILTEQG-TVSLECKVMGIP 474
              G +TC AEN VG    S   SVLV K  K P  F ++L+ +    G  V+ EC++ G  
Sbjct:  7990 VGEYTCKAENIVGAVASS---SVLVIKERKLPPSFARKLKDVQETLGFPVAFECRINGSE 8046

Query:   475 TPQLIWYKDNKKIK---------AGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRV 525
               Q+ WYKD   +K           ++  L     D S +G Y C A N +G A S++++
Sbjct:  8047 PLQVSWYKDGVLLKDDANLQTSFVHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKL 8106

Query:   526 IARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYW 585
             +       L+++  PF  L P            +V   +G S   +C V     P  I W
Sbjct:  8107 V------LLEHEVPPFFDLKPV-----------SVDLALGESGSFKCHVTGTA-PMKITW 8148

Query:   586 YNKEGVVEASDKYHI-MADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL 644
                   +     Y + + +     ++ +  +   D G++ C A++ +G    SA   H+ 
Sbjct:  8149 AKDNREIRPGGNYKMTLVENTA--TLTVLKIGKGDAGQYTCYASNVAGKDSCSA---HLG 8203

Query:   645 MPKNYRKPRFVESLKA--VMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGT 702
             +  +   PRF++ L+   ++  D    +ECK+ G P   + W+K   E++    ++++  
Sbjct:  8204 VQASIEPPRFIKKLEPSRIVKQDESTRYECKIGGSPEIKVLWYKGETEIQESSKFRMSFV 8263

Query:   703 SSL-------------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAP 749
              S+             G Y C A N  G A S+T L ++ +      E  +      K P
Sbjct:  8264 DSVAVLEMHGLSVEDSGDYTCEACNAAGSASSTTSLKVKAL------EPPIF----RKKP 8313

Query:   750 KFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKI 809
               +E LK     +  E + T      P  +VSW +D +++      KI+ E   +  + I
Sbjct:  8314 HPVETLKGADVHLECELQGT------PPFQVSWHKDKRELRSGKKYKIMSENF-LTSIHI 8366

Query:   810 HALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHY-KKPKFL-----EELKAVLSEGGA 863
              +++ AD  E++C ATND G       + L  P  + KKP  +     EE++   +  GA
Sbjct:  8367 LSVDAADVGEYQCKATNDVGSDTCVGSITLKAPPRFVKKPSDVSTIVGEEVQLQATVEGA 8426

Query:   864 VNLECKVIGVPQPTLKWFKDGRELKAGDIHKIIS-GEDGTCCLGIYTCEAHNCMGTTSSS 922
               +   V    +  +    D   +   +    +      T   G YTC+  N  G    S
Sbjct:  8427 EPISV-VWFKDKGEIVRESDNIWISYSENTATLQFSRAETANAGKYTCQIKNDAGMQECS 8485

Query:   923 AALLGFEDKSQIEKAEEGKKALIVKDPSLSTIQEEGTSEI----YDTPMASIEEREISFS 978
             A +   E  + +EK E     +   D         GT E+    +        + +   S
Sbjct:  8486 ATVSILEPAAIVEKPES--ITVTTGDTCTLECSVTGTPELTTKWFKDGKELTSDNKYKIS 8543

Query:   979 FDGKEVSVSLYET-PDLTEEEAIKVVEMYADE---LSEHISDKNMIELPPLRFTKESSRS 1034
             F  K   + +    P  +   + +V      +    S  +SD + I +PP  FT+    +
Sbjct:  8544 FFNKVSGLKIINVAPSDSGVYSFEVQNPVGKDSCTASVQVSDSDRI-VPP-SFTRRLKET 8601

Query:  1035 QNIQMEAVVID 1045
               +   +VV++
Sbjct:  8602 NGLSGSSVVME 8612

GO:0060048 "cardiac muscle contraction" evidence=IEA

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IEA

GO:0055003 "cardiac myofibril assembly" evidence=IEA

GO:0051592 "response to calcium ion" evidence=IEA

GO:0051371 "muscle alpha-actinin binding" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

GO:0048769 "sarcomerogenesis" evidence=IEA

GO:0048739 "cardiac muscle fiber development" evidence=IEA

GO:0045859 "regulation of protein kinase activity" evidence=IEA

GO:0045214 "sarcomere organization" evidence=IEA

GO:0043621 "protein self-association" evidence=IEA

GO:0043056 "forward locomotion" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0031430 "M band" evidence=IEA

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IEA

GO:0030240 "skeletal muscle thin filament assembly" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0007076 "mitotic chromosome condensation" evidence=IEA

GO:0005865 "striated muscle thin filament" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0003300 "cardiac muscle hypertrophy" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000794 "condensed nuclear chromosome" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1PXF9 HMCN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 418 (152.2 bits), Expect = 9.5e-42, Sum P(3) = 9.5e-42
 Identities = 188/761 (24%), Positives = 317/761 (41%)

Query:   306 GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGT 365
             GRT L + + R +D G+Y+    N +G     F LSV   VP        L D+ VK   
Sbjct:  2441 GRT-LRLMQTRLEDAGQYTCVVRNAAGEERKIFGLSV--LVPPRIVGENTLEDVKVKEKQ 2497

Query:   366 RARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAE 425
                L  E+      +I W+++ + L+E+  +     G+F  I  + VS   +GR+ CLA 
Sbjct:  2498 SVTLTCEVTGNPVPEITWHKDGQLLQEDDTHHIMSGGHFLKITNAQVS--HTGRYACLAS 2555

Query:   426 NAVGRSHCSCELSVLV-PKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKD- 483
             N  G    S  L+VLV P        +   +  +      SL C+    P   + W+KD 
Sbjct:  2556 NTAGDKSKSFSLNVLVSPTIAGVDSDSGPEDVTVILNSPTSLVCEAYSYPPATITWFKDG 2615

Query:   484 -----NKKIKA--GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDN 536
                  N+ I+   G       N ++ ++ G Y+C A N  G       V        ++ 
Sbjct:  2616 TPLESNRNIRILPGGRTLQILNAQEDNA-GRYSCIATNEAGEMIKHYEVKVY-IPPIINK 2673

Query:   537 DDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASD 596
              D     L+ PG +P   KEV   K K+  +  LEC+    P   S+ WY     +++ D
Sbjct:  2674 GD-----LLGPGLSP---KEV---KIKVNNTLTLECEAYAIP-SASLSWYKDGQPLKSDD 2721

Query:   597 KYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRK----P 652
               +I A G   ++++I   +  D G + CVA++ +G  +     V++ +P +++K     
Sbjct:  2722 HVNIAASG---HTLQIKEAQISDTGRYTCVASNIAGEDELDFD-VNIQVPPSFQKLWEIG 2777

Query:   653 RFVESLKAVMTDDGLV----SFECKVVGFPTPTLQWFKDNEELKPGD-VYQLTGTSSL-- 705
               +++ ++    D ++    S  C+    P PTL W+KD   L   D V  L G   L  
Sbjct:  2778 NMLDTGRSGEAKDVIINNPISLYCETNAAPPPTLTWYKDGRPLTSSDRVLILPGGRVLQI 2837

Query:   706 --------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKS 757
                     G Y CVA N  G  E S Q    D+R  L     ++   N+  P+ +  L  
Sbjct:  2838 PRAKVEDAGRYTCVAVNEAG--EDSLQY---DVRVLLPP---VIKGANSDLPEEVTVL-- 2887

Query:   758 CQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQ 817
                 VN+        S SP P+ SW +D Q ++E ++ K +    G   L+I   ++ D 
Sbjct:  2888 ----VNKSTLMECLSSGSPAPRNSWQKDGQPLLEDEHHKFVSN--GRI-LQILNTQITDI 2940

Query:   818 AEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPT 877
               + CIA N  G +     L ++VP     P   E L  V++    ++L C+V G P P 
Sbjct:  2941 GRYVCIAENTAGSAKKYFNLNVHVPPSVIGPN-PENLTVVVNN--FISLTCEVSGFPPPD 2997

Query:   878 LKWFKDGRELKAGDIHKIISGEDGTCCL-------GIYTCEAHNCMGTTSSSAALLGFED 930
             L W K+ + +K      I+ G      +       G YTC A N  G +    +L  +  
Sbjct:  2998 LSWLKNEQPIKLNTNALIVPGGRTLQIIRAKVSDGGEYTCIAINQAGESKKKVSLTVYVP 3057

Query:   931 KSQIEKAEEGKKALIVKDPSLSTIQEEGTS------EIYDTPMASIEEREISFSFDGKEV 984
              S  +   E    + V++ + ++++ E  +        Y       E   +    DG+ +
Sbjct:  3058 PSIKDHGSESLSVVNVREGTSASLECESNAVPPPVITWYKNGQMITESTHLEILADGQML 3117

Query:   985 SVSLYETPDLTEEEAIKVVEMYA-DELSEHISDKNMIELPP 1024
              +   E  D T +   + + +   D+ + H++    + +PP
Sbjct:  3118 HIKKAEVSD-TGQYVCRAINVAGRDDKNFHLN----VYVPP 3153

GO:0005509 "calcium ion binding" evidence=IEA

WB|WBGene00006436 ttn-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 371 (135.7 bits), Expect = 2.4e-41, Sum P(7) = 2.4e-41
 Identities = 117/402 (29%), Positives = 189/402 (47%)

Query:   551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSI 610
             P F   +++ +AKIG   IL       P P ++ WY+    +  +D  ++     G Y +
Sbjct: 16398 PNFHHLLQDDEAKIGEPKILVVTNTTLPEP-TVDWYHNGEHISINDSNYLRKHDKGRYEL 16456

Query:   611 EINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVM-TDDGLVS 669
              I  +++ D+G+WK V  ++ G  + S A + V++P     P F + L  V  ++  ++ 
Sbjct: 16457 HILSVDSTDEGKWKAVGKNAFGECE-SEAKLTVVIPDGQYAPSFGKQLSDVKCSESDILK 16515

Query:   670 FECKVVGFPTPTLQWFKDNEELKPGDVYQL-----TGTSSL----------GSYCCVAKN 714
              E  +   P P + WF++  E++    ++L     +G  SL          G Y CVAKN
Sbjct: 16516 LEVNIQANPAPEINWFRNESEIEHSQHHRLQFDDGSGNYSLTIIDAYAEDSGEYKCVAKN 16575

Query:   715 VMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSC-QATVNEEFKFTVQVS 773
              +GKA +   + IE++   LS+  K +    +KAP+F   L +  +     +      VS
Sbjct: 16576 KIGKAHTVCCVRIEEL---LSKRSKKI--DGSKAPRFRMQLPTPREVPQGADLTLVCSVS 16630

Query:   774 ISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFG--QS 831
              +P P + W +DD+ + +  N ++  E  GVC L I      DQ  + C A N  G  QS
Sbjct: 16631 GTPHPNIKWTKDDKPI-DMSNKQVRHEN-GVCTLHIIGARDDDQGRYVCEAENIHGVAQS 16688

Query:   832 ITSCFLKLNVPKHYKKPKFLEEL-KAVLSEGGAVNLECKVIGVPQPTLKWFKDGREL--- 887
              +   +K  V K + +PKFLE L      EG  + LEC V G P PT+ W+KDG +L   
Sbjct: 16689 FSVVEIKEAVDKDHVRPKFLEPLVNCSTCEGNEMVLECCVTGKPIPTITWYKDGLKLIIE 16748

Query:   888 --------KAG----DIHKIISGEDGTCCLGIYTCEAHNCMG 917
                     + G    +I  ++  +DG      YTCEA N +G
Sbjct: 16749 NRMLQYTDRKGVSRLNIMNVVMNDDGE-----YTCEAVNSLG 16785

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0031674 "I band" evidence=IDA

GO:0031672 "A band" evidence=IDA

UNIPROTKB|F1S0Y1 F1S0Y1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 479 (173.7 bits), Expect = 2.8e-47, Sum P(3) = 2.8e-47
 Identities = 209/774 (27%), Positives = 329/774 (42%)

Query:   199 GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGT 258
             GR+ L++ R +    GRYS  A N +G +  +FELSV   VP  P  I  L D  + V T
Sbjct:  1293 GRS-LHVERAQATHAGRYSCVAENVAGRAERRFELSV--LVP--PELIGDL-DPLINV-T 1345

Query:   259 RARLLVEIRSPTEIKCQFDLNNTIPFSFR-AQGDHPIF-GNRFRAINRDGRTELNIRRVR 316
              A     + SP  + C+       P   R  +G+ PI  G+    +   G   L + R +
Sbjct:  1346 AA-----LHSPLTLLCE--ATGIPPPEVRWFRGEEPISPGDNTYLLA--GGWMLRMPRAQ 1396

Query:   317 RDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKV--GTRARLLVEIR 374
               D G YS  ASNE+G     +  SVE  VP  P+      + A++V  G  A L     
Sbjct:  1397 ERDRGLYSCLASNEAGEVRRNY--SVEVLVP--PSIENEDVEEAIRVPEGQTAHLTCNAT 1452

Query:   375 SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCS 434
                +  + W+++ R L     YR   +G    + +   +L ++G ++C+A NA+G     
Sbjct:  1453 GHPQPNVTWFKDGRPLAGGDTYRISPEGGL--LQVLQANLSNAGHYSCIAANAIGEKTKH 1510

Query:   435 CELSVLV-PKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIF 493
              +LSVLV P    A   + + E  +T    +SL C+ +  P+P + W KD    +A +  
Sbjct:  1511 FQLSVLVVPTILGAAEDSADEEVTVTVNNPISLICEALAFPSPTITWMKDGAPFEASNNI 1570

Query:   494 ALTANPKDPSSL-------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMP 546
              L         L       G YTC   N +G A     V      S +  DD       P
Sbjct:  1571 QLLPGTHGLQILNAQKEDAGQYTCLVTNELGEAMKNYHVEVLIPPS-ISKDD-------P 1622

Query:   547 PGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLG 606
              G   + +KEV   K K+ ++  L+C+    P P +I WY     V  + + HI+ +G  
Sbjct:  1623 SGE--VGVKEV---KTKVNSTLTLDCESWAVP-PPTISWYKDGRPVTPNQRVHILGEGR- 1675

Query:   607 GYSIEINYLEAVDDGEWKCVATSSSGVK-QFSAAYVHVLMPKNYRKPRF---------VE 656
                ++I   +  D G + CVAT+ +G   Q     +  L+P     P F          E
Sbjct:  1676 --LLQIQPTQLSDSGRYLCVATNVAGEDDQDFNVLIQALLPSPV-PPMFQKVGDASAPFE 1732

Query:   657 SLKAVMTDDGLVS------------FECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSS 704
             +L  +    G V+              C     P P L W+++++ L   D     G S 
Sbjct:  1733 TLSQMEEARGGVTEYREIVENNPAYLYCDTNAVPPPELTWYREDQPLSAAD-----GASI 1787

Query:   705 L-GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEE---DKLLLLTNNKAPKFIEGLKSCQA 760
             L G    V +  + +AE + + + +   N + E+    +LL+LT        E L   + 
Sbjct:  1788 LQGGR--VLQIPLVRAEDAGRYSCK-ASNEVGEDWLHYELLVLTPPVILGDTEELVE-EV 1843

Query:   761 TVNEEFKFTVQVSI--SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQA 818
             TVN     ++Q     +P P +SW ++      S  +++L++  G   L++   EVAD A
Sbjct:  1844 TVNASSTVSLQCPALGNPAPSISWLQNGLPFSPSPRLQVLED--GQV-LQVSTAEVADAA 1900

Query:   819 EWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTL 878
              + C+A N  G +     L++  P         E++ AVL  G +V+L C+V   P P +
Sbjct:  1901 SYMCVAENPAGSAEKLFTLRVQAPPRIAGLNS-EQVTAVL--GNSVSLPCEVHAHPSPEV 1957

Query:   879 KWFKDGRELKAGD-------IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
              W+KDGR L  G+        H +   +      G+YTCEA N  G       L
Sbjct:  1958 TWYKDGRALPLGEKVFLLPGTHTLQLAQAQPSDSGMYTCEALNAAGRDQKQVQL 2011

GO:0030054 "cell junction" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	1075
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-16
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-16
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	7e-16
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	8e-16
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	4e-12
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	4e-12
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	1e-11
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	3e-09
smart00410	85	smart00410, IG_like, Immunoglobulin like	1e-08
smart00409	85	smart00409, IG, Immunoglobulin	1e-08
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	1e-08
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	1e-08
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-08
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	2e-08
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	3e-08
smart00410	85	smart00410, IG_like, Immunoglobulin like	4e-08
smart00409	85	smart00409, IG, Immunoglobulin	4e-08
smart00410	85	smart00410, IG_like, Immunoglobulin like	6e-08
smart00409	85	smart00409, IG, Immunoglobulin	6e-08
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	6e-08
cd00096	74	cd00096, Ig, Immunoglobulin domain	8e-08
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	1e-07
cd00096	74	cd00096, Ig, Immunoglobulin domain	1e-07
smart00410	85	smart00410, IG_like, Immunoglobulin like	2e-07
smart00409	85	smart00409, IG, Immunoglobulin	2e-07
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	2e-07
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	3e-07
smart00410	85	smart00410, IG_like, Immunoglobulin like	6e-07
smart00410	85	smart00410, IG_like, Immunoglobulin like	6e-07
smart00409	85	smart00409, IG, Immunoglobulin	6e-07
smart00409	85	smart00409, IG, Immunoglobulin	6e-07
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	6e-07
cd00096	74	cd00096, Ig, Immunoglobulin domain	7e-07
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	7e-07
smart00410	85	smart00410, IG_like, Immunoglobulin like	1e-06
smart00409	85	smart00409, IG, Immunoglobulin	1e-06
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	1e-06
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	2e-06
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	3e-06
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	3e-06
cd00096	74	cd00096, Ig, Immunoglobulin domain	3e-06
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	5e-06
cd05739	69	cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobul	6e-06
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	7e-06
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	7e-06
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	7e-06
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	9e-06
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	1e-05
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	1e-05
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	1e-05
cd00096	74	cd00096, Ig, Immunoglobulin domain	1e-05
smart00410	85	smart00410, IG_like, Immunoglobulin like	2e-05
smart00409	85	smart00409, IG, Immunoglobulin	2e-05
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	2e-05
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	3e-05
smart00410	85	smart00410, IG_like, Immunoglobulin like	4e-05
smart00409	85	smart00409, IG, Immunoglobulin	4e-05
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	4e-05
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	4e-05
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	9e-05
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	1e-04
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	1e-04
cd05739	69	cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobul	2e-04
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	2e-04
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	3e-04
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	4e-04
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	4e-04
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	4e-04
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	5e-04
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	5e-04
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	5e-04
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	5e-04
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	5e-04
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	6e-04
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	6e-04
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	6e-04
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	7e-04
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	8e-04
cd05733	77	cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig	8e-04
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	0.001
cd05893	75	cd05893, Ig_Palladin_C, C-terminal immunoglobulin	0.001
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	0.001
cd05892	75	cd05892, Ig_Myotilin_C, C-terminal immunoglobulin	0.001
cd05849	93	cd05849, Ig1_Contactin-1, First Ig domain of conta	0.001
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	0.002
cd00096	74	cd00096, Ig, Immunoglobulin domain	0.002
cd00096	74	cd00096, Ig, Immunoglobulin domain	0.002
cd00096	74	cd00096, Ig, Immunoglobulin domain	0.003
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	0.003
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	0.003
cd05848	94	cd05848, Ig1_Contactin-5, First Ig domain of conta	0.003
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	0.004
cd00096	74	cd00096, Ig, Immunoglobulin domain	0.004
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	0.004
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	0.004
cd05858	90	cd05858, Ig3_FGFR-2, Third immunoglobulin (Ig)-lik	0.004
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	0.004
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	0.004

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 75.4 bits (186), Expect = 2e-16
 Identities = 24/90 (26%), Positives = 49/90 (54%)

Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL 409
           P F ++  D+ V+ G  AR    +    +  + W+++ + L  +  ++  ++G  Y + +
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60

Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
           S+V   D G++TC+A N+ G +  S EL+V
Sbjct: 61  SNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 75.0 bits (185), Expect = 2e-16
 Identities = 34/89 (38%), Positives = 44/89 (49%), Gaps = 12/89 (13%)

Query: 848 PKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL- 905
           PKF ++ K   + EG +    C V G P PT+ WFKDG+ L++ D  K+   E GT  L 
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTY-EGGTYTLT 59

Query: 906 ---------GIYTCEAHNCMGTTSSSAAL 925
                    G YTC A N  G   +SA L
Sbjct: 60  ISNVQPDDEGKYTCVATNSAGEAEASAEL 88

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 73.4 bits (181), Expect = 7e-16
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLK 808
           PKF +  K  +    E  +FT  V+  P+P VSWF+D Q +  SD  K+  E  G   L 
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEG-GTYTLT 59

Query: 809 IHALEVADQAEWKCIATNDFGQSITSCFLK 838
           I  ++  D+ ++ C+ATN  G++  S  L 
Sbjct: 60  ISNVQPDDEGKYTCVATNSAGEAEASAELT 89

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 73.4 bits (181), Expect = 8e-16
 Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 14/90 (15%)

Query: 652 PRFVESLKAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL-- 705
           P+F +  K V   +G    F C V G P PT+ WFKD + L+  D +++T   GT +L  
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60

Query: 706 --------GSYCCVAKNVMGKAESSTQLTI 727
                   G Y CVA N  G+AE+S +LT+
Sbjct: 61  SNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 16/103 (15%)

Query: 136 PAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPI-FGNRF 192
           P F ++  D+ V+ G  AR    +   P   +    D               P+   +RF
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKD-------------GQPLRSSDRF 47

Query: 193 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
           +     G   L I  V+ DD G+Y+  A+N +G + A  EL+V
Sbjct: 48  KVTYEGGTYTLTISNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 16/103 (15%)

Query: 243 PAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPI-FGNRF 299
           P F ++  D+ V+ G  AR    +   P   +    D               P+   +RF
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKD-------------GQPLRSSDRF 47

Query: 300 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
           +     G   L I  V+ DD G+Y+  A+N +G + A  EL+V
Sbjct: 48  KVTYEGGTYTLTISNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 12/90 (13%)

Query: 448 PFFTKELEAI-LTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL- 505
           P FT++ + + + E  +    C V G P P + W+KD + +++ D F +T       +L 
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGT-YTLT 59

Query: 506 ---------GTYTCEAVNCMGAAFSTSRVI 526
                    G YTC A N  G A +++ + 
Sbjct: 60  ISNVQPDDEGKYTCVATNSAGEAEASAELT 89

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 27/93 (29%), Positives = 56/93 (60%), Gaps = 3/93 (3%)

Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSI 610
           P F ++ ++V+ + G SA   C V   P P ++ W+     + +SD++ +  +G G Y++
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDP-TVSWFKDGQPLRSSDRFKVTYEG-GTYTL 58

Query: 611 EINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
            I+ ++  D+G++ CVAT+S+G +  ++A + V
Sbjct: 59  TISNVQPDDEGKYTCVATNSAG-EAEASAELTV 90

Length = 90

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 52.9 bits (127), Expect = 1e-08
 Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 10/77 (12%)

Query: 859 SEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIY 908
            EG +V L C+  G P P + W+K G +L A      +S    T  L          G Y
Sbjct: 7   KEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTY 66

Query: 909 TCEAHNCMGTTSSSAAL 925
           TC A N  G+ SS   L
Sbjct: 67  TCAATNSSGSASSGTTL 83

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 52.9 bits (127), Expect = 1e-08
 Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 10/77 (12%)

Query: 859 SEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIY 908
            EG +V L C+  G P P + W+K G +L A      +S    T  L          G Y
Sbjct: 7   KEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTY 66

Query: 909 TCEAHNCMGTTSSSAAL 925
           TC A N  G+ SS   L
Sbjct: 67  TCAATNSSGSASSGTTL 83

Length = 85

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 52.3 bits (125), Expect = 1e-08
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 10/70 (14%)

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCVAKNVMG 717
           + FEC+V G PTPT++W K+ + + P D +++    +L          G Y C+A+N +G
Sbjct: 2   IVFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVG 61

Query: 718 KAESSTQLTI 727
             ++  QL I
Sbjct: 62  NVQAGAQLII 71

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 53.3 bits (128), Expect = 1e-08
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 16/86 (18%)

Query: 857 VLSEGGAVNLECKVIGVPQPTLKWFKDGRELK--------------AGDIH--KIISGED 900
           ++S+G    L CK  G P PT++W K+G+ L+              +G +   +++ G  
Sbjct: 12  IVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRK 71

Query: 901 GTCCLGIYTCEAHNCMGTTSSSAALL 926
           G    G+Y C AHN +G   S  A L
Sbjct: 72  GRSDEGVYVCVAHNSLGEAVSRNASL 97

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query: 82  GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
            +RF+     G   L I  V+ DD G+Y+  A+N +G + A  EL+V
Sbjct: 44  SDRFKVTYEGGTYTLTISNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 28/80 (35%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 850 FLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGD---IHKIISGEDGTCCLG 906
            L     V+ EG  V L C   G P P   W+KDG  L +         +S ED     G
Sbjct: 3   VLTPSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFFTPNVSAEDS----G 58

Query: 907 IYTCEAHN-CMGTTSSSAAL 925
            YTC A N   G TS+   L
Sbjct: 59  TYTCVASNGGGGKTSNPVTL 78

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 559 NVKAKIGTSAILECQVLVPPW----PRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINY 614
           + +  +G  A+LEC    PP     P   +  + + +   +++  I+ DG    ++ I  
Sbjct: 5   DTQVAVGEMAVLECS---PPRGHPEPTVSWRKDGQPLNLDNERVRIVDDG----NLLIAE 57

Query: 615 LEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
               D+G +KCVAT+  G ++ +AA + V
Sbjct: 58  ARKSDEGTYKCVATNMVGERESAAARLSV 86

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 51.4 bits (123), Expect = 4e-08
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 2/82 (2%)

Query: 760 ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAE 819
               E    + + S SP P+V+W++   +++       +  +     L I  +   D   
Sbjct: 6   VKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGT 65

Query: 820 WKCIATNDFGQSITSCFLKLNV 841
           + C ATN  G    S    L V
Sbjct: 66  YTCAATNSSGS--ASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 51.4 bits (123), Expect = 4e-08
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 2/82 (2%)

Query: 760 ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAE 819
               E    + + S SP P+V+W++   +++       +  +     L I  +   D   
Sbjct: 6   VKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGT 65

Query: 820 WKCIATNDFGQSITSCFLKLNV 841
           + C ATN  G    S    L V
Sbjct: 66  YTCAATNSSGS--ASSGTTLTV 85

Length = 85

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 50.6 bits (121), Expect = 6e-08
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 358 DIAVKVGTRARLLVEIRSPTEIKIHWYRND-RKLEENKIYRTQHDGNFYFIDLSSVSLFD 416
            + VK G    L  E       ++ WY+   + L E+  +     G+   + +S+V+  D
Sbjct: 3   SVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPED 62

Query: 417 SGRWTCLAENAVGRSHCSCELSV 439
           SG +TC A N+ G +     L+V
Sbjct: 63  SGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 50.6 bits (121), Expect = 6e-08
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 358 DIAVKVGTRARLLVEIRSPTEIKIHWYRND-RKLEENKIYRTQHDGNFYFIDLSSVSLFD 416
            + VK G    L  E       ++ WY+   + L E+  +     G+   + +S+V+  D
Sbjct: 3   SVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPED 62

Query: 417 SGRWTCLAENAVGRSHCSCELSV 439
           SG +TC A N+ G +     L+V
Sbjct: 63  SGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 50.1 bits (120), Expect = 6e-08
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 13/64 (20%)

Query: 860 EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKI---------ISGEDGTCCLGIYTC 910
           EG +V L C   G P P + W KDG+ L   +             +S ED     G+YTC
Sbjct: 1   EGQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASGSTLTIKSVSLEDS----GLYTC 56

Query: 911 EAHN 914
            A N
Sbjct: 57  VAEN 60

Length = 63

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 50.2 bits (119), Expect = 8e-08
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 13/73 (17%)

Query: 864 VNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGED---GTCCL----------GIYTC 910
           V L C   G P PT+ W K+G+ L +  + ++ S      G+  L          G YTC
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 911 EAHNCMGTTSSSA 923
            A N  GT S+S 
Sbjct: 61  VASNSAGTVSASV 73

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 462 GTVSLECKVMGIPTPQLIWYKDNKKIKAGDIF-----ALTANPKDPSSLGTYTCEAVN 514
            +V+L C   G P P + W KD K +   + F      LT         G YTC A N
Sbjct: 3   QSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASGSTLTIKSVSLEDSGLYTCVAEN 60

Length = 63

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 49.8 bits (118), Expect = 1e-07
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 17/74 (22%)

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQL-------TGTSSL----------GSYCC 710
           V+  C   G P PT+ W K+ + L    + ++       +G+S+L          G+Y C
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 711 VAKNVMGKAESSTQ 724
           VA N  G   +S  
Sbjct: 61  VASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 14/74 (18%)

Query: 668 VSFECKVVGFPTPTLQWFKDN-EELKPGDVYQLT---GTSSL----------GSYCCVAK 713
           V+  C+  G P P + W+K   + L     + ++    TS+L          G+Y C A 
Sbjct: 12  VTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAAT 71

Query: 714 NVMGKAESSTQLTI 727
           N  G A S T LT+
Sbjct: 72  NSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 14/74 (18%)

Query: 668 VSFECKVVGFPTPTLQWFKDN-EELKPGDVYQLT---GTSSL----------GSYCCVAK 713
           V+  C+  G P P + W+K   + L     + ++    TS+L          G+Y C A 
Sbjct: 12  VTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAAT 71

Query: 714 NVMGKAESSTQLTI 727
           N  G A S T LT+
Sbjct: 72  NSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 9/69 (13%)

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQL---------TGTSSLGSYCCVAKNVMGK 718
           V F+C+V G P PT+ W K++ EL  G    L               GSY C A+N++GK
Sbjct: 1   VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGK 60

Query: 719 AESSTQLTI 727
            E+S  LT+
Sbjct: 61  IEASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 49.5 bits (118), Expect = 3e-07
 Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 21/92 (22%)

Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGD--------------- 695
           PR VE    ++   G   +  CK  G PTPT+QW K+ + L+                  
Sbjct: 2   PRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSL 61

Query: 696 -----VYQLTGTSSLGSYCCVAKNVMGKAESS 722
                V+   G S  G Y CVA N +G+A S 
Sbjct: 62  FFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSR 93

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 47.9 bits (114), Expect = 6e-07
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 155 LLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPI-FGNRFRAINRDGRTELNIRRVRRDDG 213
           + V+      + C+   +     ++  QG   +    RF        + L I  V  +D 
Sbjct: 4   VTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDS 63

Query: 214 GRYSVTASNESGYSTAKFELSV 235
           G Y+  A+N SG +++   L+V
Sbjct: 64  GTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 47.9 bits (114), Expect = 6e-07
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 262 LLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPI-FGNRFRAINRDGRTELNIRRVRRDDG 320
           + V+      + C+   +     ++  QG   +    RF        + L I  V  +D 
Sbjct: 4   VTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDS 63

Query: 321 GRYSVTASNESGYSTAKFELSV 342
           G Y+  A+N SG +++   L+V
Sbjct: 64  GTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 47.9 bits (114), Expect = 6e-07
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 155 LLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPI-FGNRFRAINRDGRTELNIRRVRRDDG 213
           + V+      + C+   +     ++  QG   +    RF        + L I  V  +D 
Sbjct: 4   VTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDS 63

Query: 214 GRYSVTASNESGYSTAKFELSV 235
           G Y+  A+N SG +++   L+V
Sbjct: 64  GTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 47.9 bits (114), Expect = 6e-07
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 262 LLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPI-FGNRFRAINRDGRTELNIRRVRRDDG 320
           + V+      + C+   +     ++  QG   +    RF        + L I  V  +D 
Sbjct: 4   VTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDS 63

Query: 321 GRYSVTASNESGYSTAKFELSV 342
           G Y+  A+N SG +++   L+V
Sbjct: 64  GTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 15/72 (20%)

Query: 864 VNLECKVIGVPQPTLKWFKDGRELKAG----------DIHKIISGEDGTCCLGIYTCEAH 913
           V  +C+V G P PT+ W K+  EL  G           I  + +G++G+     YTCEA 
Sbjct: 1   VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGS-----YTCEAE 55

Query: 914 NCMGTTSSSAAL 925
           N +G   +SA+L
Sbjct: 56  NMVGKIEASASL 67

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 47.5 bits (112), Expect = 7e-07
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 367 ARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID----LSSVSLFDSGRWTC 422
             L      P    I W +N + L  + + R +             +S+V+L DSG +TC
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 423 LAENAVGRSHCS 434
           +A N+ G    S
Sbjct: 61  VASNSAGTVSAS 72

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 10/73 (13%)

Query: 665 DGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCVAKN 714
            G V  ECK    P PT+ W K  E L       +    SL          G Y C A+N
Sbjct: 1   GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAEN 60

Query: 715 VMGKAESSTQLTI 727
             GKA S+  L++
Sbjct: 61  FFGKANSTGSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 12/76 (15%)

Query: 462 GTVSLECKVMGIPTPQLIWYKDN-KKIKAGDIFALTANPKDPSSL----------GTYTC 510
            +V+L C+  G P P++ WYK   K +     F+++ +    S+L          GTYTC
Sbjct: 10  ESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGST-STLTISNVTPEDSGTYTC 68

Query: 511 EAVNCMGAAFSTSRVI 526
            A N  G+A S + + 
Sbjct: 69  AATNSSGSASSGTTLT 84

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 12/76 (15%)

Query: 462 GTVSLECKVMGIPTPQLIWYKDN-KKIKAGDIFALTANPKDPSSL----------GTYTC 510
            +V+L C+  G P P++ WYK   K +     F+++ +    S+L          GTYTC
Sbjct: 10  ESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGST-STLTISNVTPEDSGTYTC 68

Query: 511 EAVNCMGAAFSTSRVI 526
            A N  G+A S + + 
Sbjct: 69  AATNSSGSASSGTTLT 84

Length = 85

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 776 PEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSC 835
           PEP ++W +D  QV ES    I  E     +L I  + VADQ  ++C+A N  G +  S 
Sbjct: 11  PEPTITWNKDGVQVTESGKFHISPEG----YLAIRDVGVADQGRYECVARNTIGYASVSM 66

Query: 836 FL 837
            L
Sbjct: 67  VL 68

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 10/73 (13%)

Query: 861 GGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL--------GIYTCEA 912
           GG V +ECK    P+PT+ W K    L      +I    DG+  +        G YTC A
Sbjct: 1   GGDVIIECKPKAAPKPTISWSKGTELLTNSS--RICIWPDGSLEILNVTKSDEGKYTCFA 58

Query: 913 HNCMGTTSSSAAL 925
            N  G  +S+ +L
Sbjct: 59  ENFFGKANSTGSL 71

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 458 LTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAG--DIFALTANPKDPSSLGTYTCEAVN 514
           + E   V+L C   G P P   WYKD   + +     F    + +D    GTYTC A N
Sbjct: 11  VFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFFTPNVSAEDS---GTYTCVASN 66

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 11/60 (18%)

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCVAKNVMG 717
           V+  C   G P P + W KD + L   + +  +G S+L          G Y CVA+N  G
Sbjct: 5   VTLTCPAEGNPVPNITWLKDGKPLPESNRFVASG-STLTIKSVSLEDSGLYTCVAENSAG 63

Length = 63

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 45.6 bits (107), Expect = 3e-06
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 13/64 (20%)

Query: 464 VSLECKVMGIPTPQLIWYKDNKKIKAGDIFA-------------LTANPKDPSSLGTYTC 510
           V+L C   G P P + W K+ K + +  +               LT +       GTYTC
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 511 EAVN 514
            A N
Sbjct: 61  VASN 64

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 45.3 bits (107), Expect = 5e-06
 Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 8/67 (11%)

Query: 864 VNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL--------GIYTCEAHNC 915
           V L C + G P+PT +WF+DG  L  G  +  +S ++ T  L        G+Y C AHN 
Sbjct: 1   VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNA 60

Query: 916 MGTTSSS 922
            G+  SS
Sbjct: 61  FGSVCSS 67

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143216 cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 44.9 bits (106), Expect = 6e-06
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 7/68 (10%)

Query: 666 GLVSFECKVVGFPTPTLQWFKDNEELKPGD-------VYQLTGTSSLGSYCCVAKNVMGK 718
           G V+  C  VG P P ++W K  EEL   D       V +LT      +Y CVA + +G 
Sbjct: 2   GSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIYESANYTCVAISSLGM 61

Query: 719 AESSTQLT 726
            E++ Q+T
Sbjct: 62  IEATAQVT 69

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). Length = 69

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 44.9 bits (106), Expect = 7e-06
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 13/77 (16%)

Query: 858 LSEGGAVNLECKVIGVPQPTLKWFKDGR--------ELKAGDIH-KIISGEDGTCCLGIY 908
              G ++  ECK  G P+P  +W K+G+        E++AGD+    +S  D     G+Y
Sbjct: 11  ADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDS----GMY 66

Query: 909 TCEAHNCMGTTSSSAAL 925
            C A N  GT  +SA L
Sbjct: 67  QCVAENKHGTIYASAEL 83

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 45.1 bits (107), Expect = 7e-06
 Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 10/68 (14%)

Query: 861 GGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTC 910
           G  V L+C   G P+PT+ W KDG+  K                L          G YTC
Sbjct: 9   GSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTC 68

Query: 911 EAHNCMGT 918
              N  G+
Sbjct: 69  IVENKYGS 76

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 44.5 bits (105), Expect = 7e-06
 Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 13/74 (17%)

Query: 669 SFECKVVGFPTPTLQWFKDNEELKP--GDVYQLTGTSS-----------LGSYCCVAKNV 715
           S  C   G P P L W K+  ++ P       L    S            G+Y C+AKN 
Sbjct: 2   SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNE 61

Query: 716 MGKAESSTQLTIED 729
            G  E  + L +ED
Sbjct: 62  AGVDEDISSLFVED 75

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 44.4 bits (105), Expect = 9e-06
 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 17/76 (22%)

Query: 464 VSLECKVMGIPTPQLIWYKDNKKIK------------AGDIFALT--ANPKDPSSLGTYT 509
           V LEC+V  IP PQ+ W K+N+ +              G I  L   AN +D    G YT
Sbjct: 1   VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDA---GWYT 57

Query: 510 CEAVNCMGAAFSTSRV 525
             AVN  G     +R+
Sbjct: 58  VSAVNEAGVVSCNARL 73

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 11/65 (16%)

Query: 2  GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
          G P P + W+KD + +++ D F +T       +L          G YTC A N  G A +
Sbjct: 26 GDPDPTVSWFKDGQPLRSSDRFKVTYEGGT-YTLTISNVQPDDEGKYTCVATNSAGEAEA 84

Query: 52 TSRVI 56
          ++ + 
Sbjct: 85 SAELT 89

Length = 90

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 768 FTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND 827
           F  +V+  P P V W ++   V+ SD  KI+KE     +L++  L  +D+  ++CIA ND
Sbjct: 4   FECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH----NLQVLGLVKSDEGFYQCIAEND 59

Query: 828 FG 829
            G
Sbjct: 60  VG 61

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 763 NEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKC 822
            +    T     +P P ++W +D + + ES+             L I ++ + D   + C
Sbjct: 2   GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRF-----VASGSTLTIKSVSLEDSGLYTC 56

Query: 823 IATNDFG 829
           +A N  G
Sbjct: 57  VAENSAG 63

Length = 63

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 44.0 bits (103), Expect = 1e-05
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKIL---KETLGVCHLKIHALEVADQAEWKCI 823
             T   S  P P ++W ++ + +  S   ++      + G   L I  + + D   + C+
Sbjct: 2   TLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCV 61

Query: 824 ATNDFGQSITS 834
           A+N  G    S
Sbjct: 62  ASNSAGTVSAS 72

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 75  QGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
            G       RF        + L I  V  +D G Y+  A+N SG +++   L+V
Sbjct: 32  GGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 75  QGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
            G       RF        + L I  V  +D G Y+  A+N SG +++   L+V
Sbjct: 32  GGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 4/49 (8%)

Query: 381 IHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG 429
           I W ++ + L E+   R    G+   + + SVSL DSG +TC+AEN+ G
Sbjct: 19  ITWLKDGKPLPES--NRFVASGST--LTIKSVSLEDSGLYTCVAENSAG 63

Length = 63

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 6/69 (8%)

Query: 864 VNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC------LGIYTCEAHNCMG 917
           +  EC+V G P PT+KW K+G  +   D  KI+   +           G Y C A N +G
Sbjct: 2   IVFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVG 61

Query: 918 TTSSSAALL 926
              + A L+
Sbjct: 62  NVQAGAQLI 70

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMADGLGGYSIEINYLE 616
            +V  K G S  L C+    P P  + WY     ++  S ++ +   G    ++ I+ + 
Sbjct: 2   PSVTVKEGESVTLSCEASGSP-PPEVTWYKQGGKLLAESGRFSVSRSG-STSTLTISNVT 59

Query: 617 AVDDGEWKCVATSSSGVKQFSAAYVHV 643
             D G + C AT+SSG    S   + V
Sbjct: 60  PEDSGTYTCAATNSSGSA-SSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMADGLGGYSIEINYLE 616
            +V  K G S  L C+    P P  + WY     ++  S ++ +   G    ++ I+ + 
Sbjct: 2   PSVTVKEGESVTLSCEASGSP-PPEVTWYKQGGKLLAESGRFSVSRSG-STSTLTISNVT 59

Query: 617 AVDDGEWKCVATSSSGVKQFSAAYVHV 643
             D G + C AT+SSG    S   + V
Sbjct: 60  PEDSGTYTCAATNSSGSA-SSGTTLTV 85

Length = 85

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 651 KPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL---GS 707
           KP    S   V+ +   V+  C   G P P   W+KD   L        T   S    G+
Sbjct: 1   KPVLTPS-PTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFFTPNVSAEDSGT 59

Query: 708 YCCVAKN-VMGKAESSTQLTI 727
           Y CVA N   GK  +   LT+
Sbjct: 60  YTCVASNGGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 10/66 (15%)

Query: 463 TVSLECKVMGIPTPQLIWYKDNKKIKAGDI----------FALTANPKDPSSLGTYTCEA 512
           TV L+C   G P P + W KD K  K              + L      PS  G YTC  
Sbjct: 11  TVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIV 70

Query: 513 VNCMGA 518
            N  G+
Sbjct: 71  ENKYGS 76

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 41.5 bits (97), Expect = 9e-05
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 10/74 (13%)

Query: 860 EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL--------GIYTCE 911
           EG  V+  C+  G PQP + W K G +L     H ++S   GT  +        G Y C+
Sbjct: 1   EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLS--SGTLRISRVALHDQGQYECQ 58

Query: 912 AHNCMGTTSSSAAL 925
           A N +G+  + A L
Sbjct: 59  AVNIVGSQRTVAQL 72

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 775 SPEPKVSWFRDDQQVVESDN-VKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT 833
            PEP VSW +D Q +   +  V+I+ +     +L I     +D+  +KC+ATN  G+  +
Sbjct: 24  HPEPTVSWRKDGQPLNLDNERVRIVDDG----NLLIAEARKSDEGTYKCVATNMVGERES 79

Query: 834 S 834
           +
Sbjct: 80  A 80

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 463 TVSLECKVMGIPTPQLIWYKDNKKIKAGDI-------FALTANPKDPSSLGTYTCEAVNC 515
           +V L+C   G P P + W KDNK +   +I       + L+     P   G YTC   N 
Sbjct: 11  SVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNR 70

Query: 516 MGAAFSTSRV 525
            G   +T +V
Sbjct: 71  AGEINATYKV 80

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143216 cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 7/68 (10%)

Query: 861 GGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGI-----YTCEAHNC 915
           GG+VNL C  +G P P +KW K G EL   D   +  G +      I     YTC A + 
Sbjct: 1   GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV--GRNVLELTNIYESANYTCVAISS 58

Query: 916 MGTTSSSA 923
           +G   ++A
Sbjct: 59  LGMIEATA 66

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). Length = 69

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 10/71 (14%)

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQL----------TGTSSLGSYCCVAKNVMG 717
           +  EC   G PTP + W + +  L P    +L             S  G Y C A+N  G
Sbjct: 1   LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEG 60

Query: 718 KAESSTQLTIE 728
            A     +T+E
Sbjct: 61  SARHHYTVTVE 71

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 775 SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFG 829
           +P+P+++WF+D   V  + N +I +   G   L+I   E +DQ +++C+ATN  G
Sbjct: 10  NPDPEITWFKDFLPVDTTSNGRIKQLRSGA--LQIENSEESDQGKYECVATNSAG 62

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 670 FECKVVGFPTPTLQWFKDNEEL-KPGDVYQLTGT--------SSLGSYCCVAKNVMGKAE 720
           +ECK  G P P  +W K+ + L     +    G         S  G Y CVA+N  G   
Sbjct: 19  WECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIY 78

Query: 721 SSTQLTI 727
           +S +L +
Sbjct: 79  ASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 14/64 (21%)

Query: 668 VSFECKVVGFPTPTLQWFKDNEELK------PGDVYQLTGTSSL--------GSYCCVAK 713
           V  +C   G P PT+ W KD +  K         V +   T  L        G Y C+ +
Sbjct: 12  VRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVE 71

Query: 714 NVMG 717
           N  G
Sbjct: 72  NKYG 75

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 10/68 (14%)

Query: 671 ECKVVGFPTPTLQWFKDNEELKPGDVY--------QLTGTSSL--GSYCCVAKNVMGKAE 720
           EC   G PTP + W K   EL              ++   S    G Y C A N +G A 
Sbjct: 4   ECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSAR 63

Query: 721 SSTQLTIE 728
            +  +T+E
Sbjct: 64  HTISVTVE 71

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 11/60 (18%)

Query: 675 VGFPTPTLQWFKDNEELKPGD--VYQLTG---------TSSLGSYCCVAKNVMGKAESST 723
            G P PT+ W KD + L   +  V  +            S  G+Y CVA N++G+ ES+ 
Sbjct: 22  RGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAA 81

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 364 GTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCL 423
           G RA L  + R   E  IHW   D KL  N      +D     I +++V   D+G +TC+
Sbjct: 1   GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVK--DTGSFTCI 58

Query: 424 AENAVGRSHCSCELSV 439
           A NA G +  + EL +
Sbjct: 59  ASNAAGEATATVELHI 74

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 83  NRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
            R +       T L I+   R D G+Y++T  N +G  +A   + V
Sbjct: 29  GRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 190 NRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
            R +       T L I+   R D G+Y++T  N +G  +A   + V
Sbjct: 29  GRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 297 NRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
            R +       T L I+   R D G+Y++T  N +G  +A   + V
Sbjct: 29  GRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 462 GTVSLECKVMGIPTPQLIWYKDNKKIK-AGDIF-----ALTANPKDPSSLGTYTCEAVNC 515
           G V +ECK    P P + W K  + +  +  I      +L       S  G YTC A N 
Sbjct: 2   GDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENF 61

Query: 516 MGAAFST 522
            G A ST
Sbjct: 62  FGKANST 68

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 22/75 (29%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 463 TVSLECKVMGIPTPQLIWYKDNKKIKA---------GDIFALTANPKDPSSLGTYTCEAV 513
           TV   C   G+PTP + W  +   +           G    LT      S  G YTCEA+
Sbjct: 3   TVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAI 62

Query: 514 NCMGAAFSTSRVIAR 528
           N  G  F     I  
Sbjct: 63  NTRGMVFGIPDGILT 77

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 14/73 (19%)

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD-------------VYQLTGTSSLGSYCCVAKN 714
           V+  C   GFP PT+ W KD E ++ G+             +  +        Y C+A+N
Sbjct: 21  VTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVD-KLDEAEYTCIAEN 79

Query: 715 VMGKAESSTQLTI 727
             G+ E+   L +
Sbjct: 80  KAGEQEAEIHLKV 92

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 39.4 bits (92), Expect = 7e-04
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 12/72 (16%)

Query: 663 TDDGLVSFECKVVGFPTPTLQWFKDNEELK--PGDVYQLTGTSSL----------GSYCC 710
           +D+G VS  C+  G P PT +W  +  E+   P   Y L G + +          G Y C
Sbjct: 17  SDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQC 76

Query: 711 VAKNVMGKAESS 722
           +A N++G   S 
Sbjct: 77  LASNIVGTVLSR 88

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 10/75 (13%)

Query: 861 GGAVNLECKV-IGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL--------GIYTCE 911
           G    LEC    G P+PT+ W KDG+ L   +    I  +DG   +        G Y C 
Sbjct: 11  GEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIV-DDGNLLIAEARKSDEGTYKCV 69

Query: 912 AHNCMGTTSSSAALL 926
           A N +G   S+AA L
Sbjct: 70  ATNMVGERESAAARL 84

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 13/74 (17%)

Query: 866 LECKVIGVPQPTLKWFKDGRELKAGDIHKIISGED-GTCCL------------GIYTCEA 912
           ++C+  G P PT  W ++G         ++    D GT  +            G Y C A
Sbjct: 3   IKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYA 62

Query: 913 HNCMGTTSSSAALL 926
            N +GT  S+   L
Sbjct: 63  SNELGTAISNEIHL 76

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 16/92 (17%)

Query: 848 PKFLEELKAVL----SEGGAVNLECKVIGVPQPTLKWFKDGRELK----------AGDIH 893
           P F E+    +    S+ G V+L C+  G P PT +W  +G E+            G++ 
Sbjct: 2   PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNL- 60

Query: 894 KIISGEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
            +IS        G Y C A N +GT  S  A 
Sbjct: 61  -VISNPSKAKDAGRYQCLASNIVGTVLSREAT 91

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain of palladin

 Score = 38.5 bits (89), Expect = 0.001
 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 11/73 (15%)

Query: 464 VSLECKVMGIPTPQLIWYKDNKKIKAGD-----------IFALTANPKDPSSLGTYTCEA 512
           V LEC+V G+P PQ+ W K+N+ +                  L          G YT  A
Sbjct: 1   VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSA 60

Query: 513 VNCMGAAFSTSRV 525
            N  G    T+R+
Sbjct: 61  KNEAGIVSCTARL 73

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. Length = 75

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 14/74 (18%)

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD--------------VYQLTGTSSLGSYCCVAK 713
           V F C   G PTPT++W K+ +E K                 + +    S  G+Y CV +
Sbjct: 12  VKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 71

Query: 714 NVMGKAESSTQLTI 727
           N  G    +  L +
Sbjct: 72  NEYGSINHTYHLDV 85

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143300 cd05892, Ig_Myotilin_C, C-terminal immunoglobulin (Ig)-like domain of myotilin

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 17/76 (22%)

Query: 464 VSLECKVMGIPTPQLIWYKDNKKIK------------AGDIFAL--TANPKDPSSLGTYT 509
           V LEC++  IP P++ W ++N+ ++            +G +  L    N KD    G YT
Sbjct: 1   VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDA---GWYT 57

Query: 510 CEAVNCMGAAFSTSRV 525
             AVN  G A   +R+
Sbjct: 58  VSAVNEAGVATCHARL 73

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. Length = 75

>gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1

 Score = 38.8 bits (90), Expect = 0.001
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 7/77 (9%)

Query: 859 SEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHK-------IISGEDGTCCLGIYTCE 911
           S  G V++ C+    P P  KW K+  ++   +          +I+  D     G Y C 
Sbjct: 17  STEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCI 76

Query: 912 AHNCMGTTSSSAALLGF 928
             N  G   S  A L F
Sbjct: 77  VSNIYGKVRSREATLSF 93

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 93

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 16/81 (19%)

Query: 457 ILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK--------------AGDIFALTA--NPK 500
           I+++    +L CK  G PTP + W K+ + ++              +G +F L      K
Sbjct: 12  IVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRK 71

Query: 501 DPSSLGTYTCEAVNCMGAAFS 521
             S  G Y C A N +G A S
Sbjct: 72  GRSDEGVYVCVAHNSLGEAVS 92

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 37.9 bits (87), Expect = 0.002
 Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 4/73 (5%)

Query: 164 EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE----LNIRRVRRDDGGRYSVT 219
            + C          ++   G         R  +  G +     L I  V  +D G Y+  
Sbjct: 2   TLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCV 61

Query: 220 ASNESGYSTAKFE 232
           ASN +G  +A   
Sbjct: 62  ASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 37.9 bits (87), Expect = 0.002
 Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 4/73 (5%)

Query: 271 EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE----LNIRRVRRDDGGRYSVT 326
            + C          ++   G         R  +  G +     L I  V  +D G Y+  
Sbjct: 2   TLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCV 61

Query: 327 ASNESGYSTAKFE 339
           ASN +G  +A   
Sbjct: 62  ASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 37.5 bits (86), Expect = 0.003
 Identities = 13/54 (24%), Positives = 20/54 (37%)

Query: 72  NRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFE 125
            +      +   R       G + L I  V  +D G Y+  ASN +G  +A   
Sbjct: 21  GKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)

Query: 464 VSLECKVMGIPTPQLIWYKDNKKIKAG-----DIFALTANPKDPSSLGTYTCEAVNCMGA 518
           V  +C+V G P P ++W K++ ++  G     D  +L          G+YTCEA N +G 
Sbjct: 1   VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGK 60

Query: 519 AFSTSRVI 526
             +++ + 
Sbjct: 61  IEASASLT 68

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 15/79 (18%)

Query: 852 EELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKI----ISGEDGTCCL-- 905
           ++L AV      V   C   G P PT++W K+G+E K    H+I    +  +  +  +  
Sbjct: 1   KKLHAV-PAANTVKFRCPAAGNPTPTMRWLKNGKEFKQE--HRIGGYKVRNQHWSLIMES 57

Query: 906 ------GIYTCEAHNCMGT 918
                 G YTC   N  G+
Sbjct: 58  VVPSDKGNYTCVVENEYGS 76

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5

 Score = 37.6 bits (87), Expect = 0.003
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 12/93 (12%)

Query: 848 PKFLEELKAVL----SEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHK--------I 895
           P F++E    +    S+   V L C+  G P PT +W ++G E+     ++        I
Sbjct: 2   PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLI 61

Query: 896 ISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGF 928
           IS        G Y C A N +G+  S  ALL F
Sbjct: 62  ISNPSEVKDSGRYQCLATNSIGSILSREALLQF 94

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. Length = 94

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 5/45 (11%)

Query: 2  GIPTPQLIWYKDNKKIKAG--DIFALTANPKDPSSLGTYTCEAVN 44
          G P P   WYKD   + +     F    + +D    GTYTC A N
Sbjct: 25 GNPPPNYTWYKDGVPLSSSQNGFFTPNVSAEDS---GTYTCVASN 66

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 37.1 bits (85), Expect = 0.004
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 568 AILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMADGL--GGYSIEINYLEAVDDGEWK 624
             L C    PP P +I W  N + +  +       + G   G  ++ I+ +   D G + 
Sbjct: 1   VTLTCLASGPPPP-TITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYT 59

Query: 625 CVATSSSGVKQFSA 638
           CVA++S+G    S 
Sbjct: 60  CVASNSAGTVSASV 73

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 37.2 bits (86), Expect = 0.004
 Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 12/72 (16%)

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPG-DVYQLT-----------GTSSLGSYCCVAKNV 715
           V+  C + G P PT QWF+D   L  G   Y ++           G    G Y C A N 
Sbjct: 1   VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNA 60

Query: 716 MGKAESSTQLTI 727
            G   SS   T+
Sbjct: 61  FGSVCSSQNFTL 72

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 36.8 bits (85), Expect = 0.004
 Identities = 22/62 (35%), Positives = 24/62 (38%), Gaps = 9/62 (14%)

Query: 465 SLECKVMGIPTPQLIWYKDNKKI--KAGDIFALTANPK-------DPSSLGTYTCEAVNC 515
           SL C   GIP P+L W K+   I  K      L AN              G YTC A N 
Sbjct: 2   SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNE 61

Query: 516 MG 517
            G
Sbjct: 62  AG 63

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143266 cd05858, Ig3_FGFR-2, Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

 Score = 37.2 bits (86), Expect = 0.004
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
           L +V+  D+G +TCLA N++G SH S  L+VL
Sbjct: 59  LRNVTFEDAGEYTCLAGNSIGISHHSAWLTVL 90

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. Length = 90

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 37.0 bits (85), Expect = 0.004
 Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 6/74 (8%)

Query: 447 APFFTKELEAILTEQGTVSLECKVMGIP-TPQLIWYKD-----NKKIKAGDIFALTANPK 500
            P  T      +T  G V+L C   G P  P + WY++                LT +  
Sbjct: 1   KPVITVSPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGSTLTLSSV 60

Query: 501 DPSSLGTYTCEAVN 514
                GTYTC A N
Sbjct: 61  TSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 15/80 (18%)

Query: 847 KPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFK-DGR------ELKAGDIHKI--IS 897
              F ++  A+   G  V LEC  +G P P +KW K DG          +G + KI  I 
Sbjct: 4   IVVFPKDTYALK--GQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQ 61

Query: 898 GEDGTCCLGIYTCEAHNCMG 917
            ED     G Y CEA N  G
Sbjct: 62  FEDE----GTYECEAENIKG 77

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1075
KOG3513|consensus	1051		100.0
KOG3513|consensus	1051		100.0
KOG4221|consensus	1381		100.0
KOG4221|consensus	1381		100.0
KOG4222|consensus	1281		100.0
KOG4222|consensus	1281		100.0
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	100.0
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	99.97
KOG4194|consensus	873		99.96
KOG4194|consensus	873		99.96
PHA02785	326	IL-beta-binding protein; Provisional	99.95
PHA02785	326	IL-beta-binding protein; Provisional	99.93
KOG3515|consensus	741		99.93
KOG3515|consensus	741		99.92
PHA02826	227	IL-1 receptor-like protein; Provisional	99.79
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.71
PHA02826	227	IL-1 receptor-like protein; Provisional	99.7
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.67
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.65
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.63
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.61
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.6
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.6
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.59
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.59
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.59
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.57
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.57
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.57
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.54
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.54
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.54
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.54
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.54
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.54
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.53
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.53
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.53
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.52
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.52
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.52
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.52
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.51
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.51
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.51
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.51
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.5
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.5
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.5
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.5
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.5
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.49
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.49
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.49
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.48
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.48
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.47
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.47
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.47
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.47
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.47
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.46
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.45
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.45
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.45
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.45
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.45
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.45
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.45
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.45
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.44
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.44
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.44
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.44
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.43
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.43
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.42
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.42
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.42
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.42
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.42
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.42
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.41
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.41
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.41
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.41
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.41
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.4
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.4
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.4
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.4
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.39
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.39
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.39
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.38
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.38
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.38
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.38
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.38
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.37
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.37
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.37
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.37
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.37
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.37
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.37
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.36
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.36
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.36
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.36
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.36
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.36
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.35
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.34
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.34
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.34
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.34
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.33
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.33
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.33
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.32
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.32
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.31
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.31
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.31
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.3
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.3
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.29
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.29
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.29
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.29
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.27
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.26
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.25
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.25
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.25
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.25
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.25
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.24
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.24
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.24
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.24
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.23
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.23
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.23
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.23
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.22
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.21
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.21
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.21
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.21
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.21
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.2
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.2
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.2
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.2
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.2
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.2
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.19
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.19
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.18
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.18
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.18
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.16
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.14
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.13
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.13
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.13
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.11
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.09
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.09
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.09
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.08
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.08
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.08
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.07
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.07
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.07
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.06
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.05
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.04
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.04
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.01
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.01
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.01
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.0
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	98.99
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.94
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.93
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.93
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.91
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	98.9
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.89
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.89
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.89
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.87
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.87
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.86
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.85
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.85
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.84
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.83
smart00409	86	IG Immunoglobulin.	98.83
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.83
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.83
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.8
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.8
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.78
smart00409	86	IG Immunoglobulin.	98.76
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.76
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.75
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.74
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.73
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.71
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.7
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.7
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.7
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.69
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.69
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.68
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.67
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.66
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.63
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.6
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.6
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.59
PHA03376	221	BARF1; Provisional	98.59
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.57
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.57
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.56
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.49
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.41
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.4
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.39
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.38
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.38
PHA03376	221	BARF1; Provisional	98.34
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.34
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.33
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.32
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.3
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.3
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.27
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.25
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.25
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.22
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.2
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.2
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.19
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.19
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.18
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.17
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.17
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.14
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.14
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.13
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.12
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.11
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.11
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.1
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.09
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.08
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.07
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.07
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.05
KOG0613|consensus	1205		98.04
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.03
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.02
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.01
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.01
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.0
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.0
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.0
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	97.99
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	97.99
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	97.98
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	97.96
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.96
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	97.96
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	97.94
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.94
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	97.93
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.92
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	97.91
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	97.91
KOG0613|consensus	1205		97.88
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.88
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	97.87
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.85
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.84
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	97.84
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	97.83
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.82
PHA02987	189	Ig domain OX-2-like protein; Provisional	97.81
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	97.8
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	97.78
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.76
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.74
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.73
PHA03270	466	envelope glycoprotein C; Provisional	97.71
PHA02987	189	Ig domain OX-2-like protein; Provisional	97.71
PRK14081	667	triple tyrosine motif-containing protein; Provisio	97.7
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.69
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	97.67
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	97.66
PHA03270	466	envelope glycoprotein C; Provisional	97.65
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	97.63
PHA03269	566	envelope glycoprotein C; Provisional	97.62
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	97.59
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	97.59
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.56
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.56
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.56
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.55
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.53
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.53
PHA03273	486	envelope glycoprotein C; Provisional	97.52
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.51
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.5
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.49
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.43
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.42
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.41
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	97.41
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.39
PHA03271	490	envelope glycoprotein C; Provisional	97.39
PHA03273	486	envelope glycoprotein C; Provisional	97.36
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.35
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.35
smart00407	75	IGc1 Immunoglobulin C-Type.	97.34
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.32
PHA03271	490	envelope glycoprotein C; Provisional	97.3
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.29
smart00407	75	IGc1 Immunoglobulin C-Type.	97.27
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.27
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.24
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.24
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.22
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.22
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.21
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.21
PHA03269	566	envelope glycoprotein C; Provisional	97.18
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.14
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.14
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.13
smart00406	81	IGv Immunoglobulin V-Type.	97.11
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.11
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.1
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.09
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.09
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.05
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.01
KOG1480|consensus	909		96.93
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	96.9
smart00406	81	IGv Immunoglobulin V-Type.	96.87
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	96.85
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	96.85
cd05770	93	IgC_beta2m Class I major histocompatibility comple	96.84
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	96.8
PHA02914	500	Immunoglobulin-like domain protein; Provisional	96.8
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	96.77
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	96.76
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	96.73
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	96.7
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	96.63
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	96.61
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	96.61
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	96.6
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	96.58
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	96.52
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.34
PHA02982	251	hypothetical protein; Provisional	96.22
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	96.22
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	96.15
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.1
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	96.1
PHA02914	500	Immunoglobulin-like domain protein; Provisional	96.09
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	96.01
PRK14081	667	triple tyrosine motif-containing protein; Provisio	96.0
PHA02633	63	hypothetical protein; Provisional	95.88
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	95.86
KOG1480|consensus	909		95.65
PHA02982	251	hypothetical protein; Provisional	95.64
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	95.63
PHA02633	63	hypothetical protein; Provisional	95.51
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	95.18
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	95.15
KOG4597|consensus	560		95.08
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	95.05
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	94.93
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	94.56
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	93.92
PHA03042	286	CD47-like protein; Provisional	93.34
KOG4597|consensus	560		92.81
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	92.77
PHA03286	492	envelope glycoprotein E; Provisional	92.73
PHA03042	286	CD47-like protein; Provisional	92.63
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	92.53
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	92.3
PHA03283	542	envelope glycoprotein E; Provisional	91.27
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	90.44
KOG1026|consensus	774		90.33
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	89.07
PHA03283	542	envelope glycoprotein E; Provisional	89.05
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	88.62
PHA02865	338	MHC-like TNF binding protein; Provisional	88.56
PHA03282	540	envelope glycoprotein E; Provisional	88.15
PHA03286	492	envelope glycoprotein E; Provisional	88.08
PF00801	69	PKD: PKD domain; InterPro: IPR000601 The PKD (Poly	87.72
PF02010	440	REJ: REJ domain; InterPro: IPR002859 The REJ (Rece	87.19
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	87.07
PF02010	440	REJ: REJ domain; InterPro: IPR002859 The REJ (Rece	86.85
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	86.43
smart00089	79	PKD Repeats in polycystic kidney disease 1 (PKD1)	85.89
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	84.25
PHA03281	642	envelope glycoprotein E; Provisional	83.64
PF00801	69	PKD: PKD domain; InterPro: IPR000601 The PKD (Poly	82.75
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	82.64
KOG1026|consensus	774		82.47
PHA03282	540	envelope glycoprotein E; Provisional	82.35
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	82.05
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	81.86
smart00089	79	PKD Repeats in polycystic kidney disease 1 (PKD1)	81.69

>KOG3513|consensus

Probab=100.00  E-value=2.4e-57  Score=517.28  Aligned_cols=530  Identities=24%  Similarity=0.418  Sum_probs=397.4

Q ss_pred             CeeeeecCceeec-cCC--eEEEEEEEecCCCcEEEEEECCEecCCCC--cEEEEEcCCEEEEEEcccC-CCCceeEEEE
Q psy16863        350 PAFIRRLHDIAVK-VGT--RARLLVEIRSPTEIKIHWYRNDRKLEENK--IYRTQHDGNFYFIDLSSVS-LFDSGRWTCL  423 (1075)
Q Consensus       350 p~~~~~~~~~~v~-~G~--~v~l~C~~~g~p~~~v~W~k~g~~l~~~~--~~~~~~~g~~~~L~I~~v~-~~d~G~Y~C~  423 (1075)
                      |.|...+.+..+. .-+  .+.|.|++.|+|.|+++|+|||..+....  ++.+. .|+   |.|.+.. ..|.|.|.|.
T Consensus        40 P~f~~q~~~~~~~~~~~~~~v~l~C~A~G~P~Psy~W~kng~~~d~~~~~~~~~~-~G~---lvI~~p~~~~d~G~YqC~  115 (1051)
T KOG3513|consen   40 PVFVEQPNDVIVPFPSDDSSVTLNCEANGNPEPSYRWTKNGTEFDPTEYPRVSVL-GGT---LVITNPDAALDQGIYQCF  115 (1051)
T ss_pred             ceeeecCCceEEecccCCccEEEEEEecCCCCceeEEEECCeecccccccceeee-cCc---eEecCCcchhhcceeEEE
Confidence            6666555443332 222  49999999999999999999999876543  33333 343   5666666 8899999999


Q ss_pred             EEeCCCceeeEEEEEeecCCCCCCCeeeeecceE-EecCCeEEEEEEEE-CCCCCeEEEEeCCEec-c--------CCCE
Q psy16863        424 AENAVGRSHCSCELSVLVPKAYKAPFFTKELEAI-LTEQGTVSLECKVM-GIPTPQLIWYKDNKKI-K--------AGDI  492 (1075)
Q Consensus       424 a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~-~~~g~~v~l~C~~~-g~p~~~v~W~~~g~~l-~--------~~~~  492 (1075)
                      |+|..|... +-.+.++.  .+.+++-......+ +.+|+.+.|.|... +.|.++|.|..+..+- .        .+..
T Consensus       116 AsN~~Gta~-S~~~~l~~--~~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~~~~~~  192 (1051)
T KOG3513|consen  116 ASNKLGTAV-SREARLQF--GFIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRVFSQEN  192 (1051)
T ss_pred             eecccceee-ccceeecc--cccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCcceeEeccc
Confidence            999999874 22333332  12222222333333 78999999999964 6788899999876542 1        1222


Q ss_pred             EEEEeCCCCCCCcEEEEEEEEecceeeE---EEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEE
Q psy16863        493 FALTANPKDPSSLGTYTCEAVNCMGAAF---STSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAI  569 (1075)
Q Consensus       493 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~---~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~  569 (1075)
                      ..|-+..+..+|.+.|.|.|.+..-...   ..+.|.+...            ......+|......+.+.....|+.+.
T Consensus       193 G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~------------~~~~~~~P~i~~~~p~~~~a~~G~~v~  260 (1051)
T KOG3513|consen  193 GNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSN------------NVMREYAPKILVPFPETETALKGQSVK  260 (1051)
T ss_pred             ceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEccc------------ccccccCCccccCCCCcccccCCCeEE
Confidence            3677888999999999999998432221   1233333211            111222233333344467788899999


Q ss_pred             EEEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEEeCCCCc
Q psy16863        570 LECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNY  649 (1075)
Q Consensus       570 L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~  649 (1075)
                      |+|.+-|.|.| .|.|+|.++... ..+.+....   ...|.|.+++.+|+|.|+|.|+|..|... ....+.|..+   
T Consensus       261 LECfA~G~P~P-~i~W~k~~g~~~-~~r~~~~~~---~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~-~~~~v~v~a~---  331 (1051)
T KOG3513|consen  261 LECFALGNPTP-QIKWRKVDGKPP-PRRATYSNY---GKVLKIPNVQYEDAGEYECIAENSRGSAT-HSGHVTVYAP---  331 (1051)
T ss_pred             EEEEecCCCCC-cEEEEeCCCCCC-Ccceeeecc---ccEEEecccCcCCCeEEEEEEecccccce-eeEEEEEecC---
Confidence            99999999999 899999998532 233333322   24899999999999999999999999654 4457777776   


Q ss_pred             CCCceeecccee-eecCCeEEEEEEEecCCCCeEEEEECCEEcCCCCe---EEEe---------ecCCCceEEEEEEecC
Q psy16863        650 RKPRFVESLKAV-MTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDV---YQLT---------GTSSLGSYCCVAKNVM  716 (1075)
Q Consensus       650 ~~p~~~~~~~~~-~~~g~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~---~~~~---------~~~d~G~Y~C~a~N~~  716 (1075)
                        |.++..+.+. +..|+.+.|.|.+.|.|.|+|+|+|||.++.+..+   +.+.         ..+|+|.|+|.|+|.+
T Consensus       332 --P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~  409 (1051)
T KOG3513|consen  332 --PYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKY  409 (1051)
T ss_pred             --chhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeeccc
Confidence              5555555554 55788999999999999999999999999987655   4432         3479999999999999


Q ss_pred             ceEEEEEEEEEEeccccCchhhhhhhccCCCCCeEEeccce--eeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCc
Q psy16863        717 GKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKS--CQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDN  794 (1075)
Q Consensus       717 g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~  794 (1075)
                      |...+++.|.|.+                 .+|.|...+..  ..+..|.++.|.|...+.|.|.++|.|+++.+..+.+
T Consensus       410 G~i~anA~L~V~a-----------------~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r  472 (1051)
T KOG3513|consen  410 GTIYANAELKVLA-----------------SAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGR  472 (1051)
T ss_pred             ceEeeeeEEEEEc-----------------cCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCce
Confidence            9999999999997                 46777766544  4688999999999999999999999999998888899


Q ss_pred             EEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEecCCCCCCeeeeecc-eeecCCCeEEEEEEEEcc
Q psy16863        795 VKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK-AVLSEGGAVNLECKVIGV  873 (1075)
Q Consensus       795 ~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~-~~~~~g~~~~L~C~v~g~  873 (1075)
                      +.+..++    +|.|.+++.+|+|.|+|.|+|.+|.+...+.|.|..+.++     ...+. ..+..|++++|.|++...
T Consensus       473 ~~i~edG----tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri-----~~~P~~~~v~~g~~v~l~Ce~shD  543 (1051)
T KOG3513|consen  473 IRILEDG----TLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRI-----TLAPSNTDVKVGESVTLTCEASHD  543 (1051)
T ss_pred             EEECCCC----cEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceE-----EeccchhhhccCceEEEEeecccC
Confidence            9886543    6999999999999999999999999999999999876543     33333 348899999999999877


Q ss_pred             CCC--eeEEEECCEEcCCC---Ce---------eEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEecCChhhh
Q psy16863        874 PQP--TLKWFKDGRELKAG---DI---------HKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKSQIE  935 (1075)
Q Consensus       874 p~p--~v~W~k~g~~l~~~---~~---------~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~~~  935 (1075)
                      |..  .|.|.+||..+...   +.         .+|.+......|+|.|+|.|.-.+.++++.+.|+|..+|.+..
T Consensus       544 ~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~  619 (1051)
T KOG3513|consen  544 PSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGPPP  619 (1051)
T ss_pred             CCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCCCCCC
Confidence            764  58999999987531   11         2344445556789999999999999999999999988876644

>KOG3513|consensus

Probab=100.00  E-value=2.9e-54  Score=492.19  Aligned_cols=686  Identities=20%  Similarity=0.310  Sum_probs=466.0

Q ss_pred             eeEEEEccCCCeeEEEeeCCCceeccCcEEEEecCCeEEEEEceec-cCCCeEEEEEEEcCceeEEE-EEEEeeeccCCC
Q psy16863        164 EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVR-RDDGGRYSVTASNESGYSTA-KFELSVESQVPD  241 (1075)
Q Consensus       164 ~~~c~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~  241 (1075)
                      .|.|.+.|+|.++|.|+++|.+............+|  .|.|.+.. ..|+|.|+|.|+|..|...+ .+.|..    ..
T Consensus        61 ~l~C~A~G~P~Psy~W~kng~~~d~~~~~~~~~~~G--~lvI~~p~~~~d~G~YqC~AsN~~Gta~S~~~~l~~----~~  134 (1051)
T KOG3513|consen   61 TLNCEANGNPEPSYRWTKNGTEFDPTEYPRVSVLGG--TLVITNPDAALDQGIYQCFASNKLGTAVSREARLQF----GF  134 (1051)
T ss_pred             EEEEEecCCCCceeEEEECCeecccccccceeeecC--ceEecCCcchhhcceeEEEeecccceeeccceeecc----cc
Confidence            467777788999999999998766543222222245  56676666 89999999999999998743 444433    24


Q ss_pred             CCccc-cccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCcccc-CC--CeEEEeeCCeEEEEEcccCC
Q psy16863        242 APAFI-RRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF-GN--RFRAINRDGRTELNIRRVRR  317 (1075)
Q Consensus       242 ~p~~~-~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~~~-~~--~~~~~~~~~~~~L~I~~~~~  317 (1075)
                      .+.|. .....+.+.+|+.+.|.|....         ..+++.+.|..+....+. .+  ++.+...|   .|.+.++..
T Consensus       135 i~~F~~e~~~~v~v~eG~~~~L~C~pP~---------~~P~l~~~W~~~~~~~~~~~~~~r~~~~~~G---~Lyfs~V~~  202 (1051)
T KOG3513|consen  135 IPKFKKEERSPVEVEEGDGVVLPCNPPA---------HFPPLRYYWMLNEFPHFVQIDNRRVFSQENG---NLYFSNVET  202 (1051)
T ss_pred             cccCccccCCcEEEEeCCceEEeCCCCC---------CCCCccEEehhccCCcccccCcceeEecccc---eEEEeecch
Confidence            45565 4567788999999999996443         245678888776655544 33  33333333   799999999


Q ss_pred             CCCEEEEEEEEeCCe---eEEEEEEEEEec---CCCCCCeeeeec-CceeeccCCeEEEEEEEecCCCcEEEEEECCEec
Q psy16863        318 DDGGRYSVTASNESG---YSTAKFELSVES---QVPDAPAFIRRL-HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKL  390 (1075)
Q Consensus       318 ~d~G~Y~C~a~n~~g---~~~~~~~l~V~~---~~~~~p~~~~~~-~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l  390 (1075)
                      +|.+.|.|.|.+...   .....+.|.+..   ....+|.+.... .......|+.+.|.|.+.|+|.|+|.|+|.|...
T Consensus       203 ~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~  282 (1051)
T KOG3513|consen  203 SDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKP  282 (1051)
T ss_pred             hhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCC
Confidence            999999999998432   234445566532   233466665443 4677889999999999999999999999988753


Q ss_pred             CCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeecCCCCCCCeeeeecceE-EecCCeEEEEEE
Q psy16863        391 EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAI-LTEQGTVSLECK  469 (1075)
Q Consensus       391 ~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~-~~~g~~v~l~C~  469 (1075)
                      . ..+......+.  +|.|.++..+|+|.|.|.|+|..|.......+.|..+|.     +...+.+. +..|+.++|.|.
T Consensus       283 ~-~~r~~~~~~~~--vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~-----w~~~~~d~~~~~gs~v~~eC~  354 (1051)
T KOG3513|consen  283 P-PRRATYSNYGK--VLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPY-----WLQKPQDTEADTGSNVTLECK  354 (1051)
T ss_pred             C-Ccceeeecccc--EEEecccCcCCCeEEEEEEecccccceeeEEEEEecCch-----hhcccceeEecCCCCeEEEEE
Confidence            2 23333444444  599999999999999999999999988899999988765     33344444 778999999999


Q ss_pred             EECCCCCeEEEEeCCEeccCCCE---E-----EEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCc
Q psy16863        470 VMGIPTPQLIWYKDNKKIKAGDI---F-----ALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPF  541 (1075)
Q Consensus       470 ~~g~p~~~v~W~~~g~~l~~~~~---~-----~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~  541 (1075)
                      +.|.|.|.|+|++||++|...++   +     .|.|..+..+|+|.|.|.|+|.+|...+++.|.|..            
T Consensus       355 a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a------------  422 (1051)
T KOG3513|consen  355 ASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLA------------  422 (1051)
T ss_pred             ecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEc------------
Confidence            99999999999999999986655   2     688999999999999999999999999999999984            


Q ss_pred             CCCCCCCCCCeeeeeccc--eEeecCCeEEEEEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecC
Q psy16863        542 NSLMPPGPAPIFIKEVEN--VKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVD  619 (1075)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~--~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d  619 (1075)
                             .+|.|...+-.  ..+..|..+.|.|...+.|.| .+.|.++++.+..+.++.+..+|    +|.|.+++.+|
T Consensus       423 -------~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p-~~~W~k~~~~~~~~~r~~i~edG----tL~I~n~t~~D  490 (1051)
T KOG3513|consen  423 -------SAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKP-KVSWLKGGEKLLQSGRIRILEDG----TLEISNVTRSD  490 (1051)
T ss_pred             -------cCCCCCCCccceEEEEEeCCeEEEeeccCCCCcc-eEEEEcCCcccccCceEEECCCC----cEEecccCccc
Confidence                   34445444433  467889999999999999998 89999999988889999999988    89999999999


Q ss_pred             CceEEEEEECCCCceeeeeEEEEEeCCCCcCCCceeecc-ceeeecCCeEEEEEEEecCCC--CeEEEEECCEEcC---C
Q psy16863        620 DGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESL-KAVMTDDGLVSFECKVVGFPT--PTLQWFKDNEELK---P  693 (1075)
Q Consensus       620 ~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~-~~~~~~g~~~~l~C~v~g~p~--p~v~W~k~g~~l~---~  693 (1075)
                      +|.|+|.|.|..|.+... ..|.|.-+     ++++..+ ...+..|..+.|.|.+.-+|.  ..+.|.+||..+.   .
T Consensus       491 aG~YtC~A~N~~G~a~~~-~~L~Vkd~-----tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~  564 (1051)
T KOG3513|consen  491 AGKYTCVAENKLGKAEST-GNLIVKDA-----TRITLAPSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPD  564 (1051)
T ss_pred             CcEEEEEEEcccCccceE-EEEEEecC-----ceEEeccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCC
Confidence            999999999999998854 46666554     3344333 334678899999999976654  4799999999764   2


Q ss_pred             CCe-----------EEEe--ecCCCceEEEEEEecCceEEEEEEEEEEeccccCchhhhhhhccCCCCCeEEeccceeee
Q psy16863        694 GDV-----------YQLT--GTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQA  760 (1075)
Q Consensus       694 ~~~-----------~~~~--~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  760 (1075)
                      +..           +.+.  ...|+|.|.|.|.-...+....+.|.|...+.               ||.      ++.+
T Consensus       565 ~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPg---------------pP~------~v~~  623 (1051)
T KOG3513|consen  565 GDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPG---------------PPP------DVHV  623 (1051)
T ss_pred             CCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCCC---------------CCC------ceeE
Confidence            222           2232  23689999999999888888889999987542               332      1111


Q ss_pred             --ecCCeEEEEEEEecCC-CCeEEEEE-CCEEeecCCcEEEEEee---CcEEEEEEccccCCCCeEEEEEEEeCCceEEE
Q psy16863        761 --TVNEEFKFTVQVSISP-EPKVSWFR-DDQQVVESDNVKILKET---LGVCHLKIHALEVADQAEWKCIATNDFGQSIT  833 (1075)
Q Consensus       761 --~~g~~~~l~C~v~g~p-~p~v~W~k-~g~~i~~~~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~  833 (1075)
                        ....++.|+-..-..- .| |.=|. ..+.-....+.......   .+..+-++.++.+--..+++.+|.|..|....
T Consensus       624 ~~i~~t~~~lsW~~g~dn~Sp-I~~Y~iq~rt~~~~~W~~v~~vp~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~geP  702 (1051)
T KOG3513|consen  624 DDISDTTARLSWSPGSDNNSP-IEKYTIQFRTPFPGKWKAVTTVPGNITGDESATVVNLSPWVEYEFRVVAVNSIGIGEP  702 (1051)
T ss_pred             eeeccceEEEEeecCCCCCCC-ceEEeEEecCCCCCcceEeeECCCcccCccceeEEccCCCcceEEEEEEEcccccCCC
Confidence              1112222322211110 11 11110 00000111111111100   01123557788888899999999999997654


Q ss_pred             EEEE-EEEecCCCCCCeeeeeccee-ecCCC--eEEEEEEE-----EccCCC--eeEEEECCEE-------cCCCCeeEE
Q psy16863        834 SCFL-KLNVPKHYKKPKFLEELKAV-LSEGG--AVNLECKV-----IGVPQP--TLKWFKDGRE-------LKAGDIHKI  895 (1075)
Q Consensus       834 s~~l-~V~~~~~~~~p~~~~~~~~~-~~~g~--~~~L~C~v-----~g~p~p--~v~W~k~g~~-------l~~~~~~~i  895 (1075)
                      |.-- .+..++  ..|..  .+..+ ...|+  .++++-+-     ...|..  .|+|..+|..       +..-+..++
T Consensus       703 S~pS~~~rT~e--a~P~~--~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~~~~W~~~~v~~~d~~~~  778 (1051)
T KOG3513|consen  703 SPPSEKVRTPE--AAPSV--NPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRVSWRPQGADKEWKEVIVSNQDQPRY  778 (1051)
T ss_pred             CCCccceecCC--CCCcc--CCccccccCCCCceEEEEeccCCHHHccCCCceEEEEEEeCCCCcccceeEecccCCceE
Confidence            3211 121111  11211  11111 12223  44444442     112222  3788877654       112122333


Q ss_pred             EECCCCceeeEEE--EEEEEeCCeeEEEEEEEEEecCC
Q psy16863        896 ISGEDGTCCLGIY--TCEAHNCMGTTSSSAALLGFEDK  931 (1075)
Q Consensus       896 ~~~~~~~~d~G~Y--~C~a~N~~G~~~~~~~l~v~~~~  931 (1075)
                      ........-.-.|  ...|.|..|....+...+++...
T Consensus       779 V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~E  816 (1051)
T KOG3513|consen  779 VVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGE  816 (1051)
T ss_pred             EEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCC
Confidence            3332222112234  67999999988777766666443

>KOG4221|consensus

Probab=100.00  E-value=1.2e-41  Score=384.66  Aligned_cols=527  Identities=21%  Similarity=0.320  Sum_probs=383.0

Q ss_pred             CccccccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCcccc--CCCeEEEeeCCeEEEEEcccCC---
Q psy16863        243 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF--GNRFRAINRDGRTELNIRRVRR---  317 (1075)
Q Consensus       243 p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~~~~~~~L~I~~~~~---  317 (1075)
                      -.|+.++.|.  .+|..+.|+|......        +.+..+.|.++|..+..  .++.+...+|   +|.|.++..   
T Consensus        42 ~~f~~ep~d~--~~~~svlLecs~~~~~--------~~~~~i~wkkDg~~l~e~~d~~~~~LsNg---Sl~i~~v~~~kh  108 (1381)
T KOG4221|consen   42 LQFLLEPSDA--MEGSSVLLECSAYAAG--------GTSVKIEWKKDGSQLNEVYDDRRQLLSNG---SLYISSVLASKH  108 (1381)
T ss_pred             ceEEeccccc--ccccceEEeccccccC--------CCCeeEEEccCchhhhhhhhhHHhhccCC---ceeEeeeccccc
Confidence            3455555544  7888998888765432        24667777755544443  2333333444   688888776   


Q ss_pred             --CCCEEEEEEEEeC-Cee-EEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCC
Q psy16863        318 --DDGGRYSVTASNE-SGY-STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN  393 (1075)
Q Consensus       318 --~d~G~Y~C~a~n~-~g~-~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~  393 (1075)
                        -++|.|+|.|+-. .|+ .+..+.|.+..    .+.|...+.+..+..|+++.|.|++.+.|.+.+.|.||+.++...
T Consensus       109 ~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~----~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~  184 (1381)
T KOG4221|consen  109 NKVDEGVYQCLATVEDVGSILSRTAKVALAG----LADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLD  184 (1381)
T ss_pred             ccccCceEEEEEEccccceeecceEEEEecc----cCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCC
Confidence              7899999999875 554 67777787764    777888888899999999999999999888899999999988877


Q ss_pred             CcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCce-eeEEEEEeecCC-CCCCCeeeeecc-eEEecCCeEEEEEEE
Q psy16863        394 KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS-HCSCELSVLVPK-AYKAPFFTKELE-AILTEQGTVSLECKV  470 (1075)
Q Consensus       394 ~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~-~~s~~l~V~~~~-~~~~p~~~~~~~-~~~~~g~~v~l~C~~  470 (1075)
                      .++....+|.   |.|.++...|.|.|+|.+++..-.. +..+.|+|.-.+ ....-.|...+. .++.+|+++.|.|.+
T Consensus       185 ~r~i~lpsG~---L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvv  261 (1381)
T KOG4221|consen  185 SRVIVLPSGA---LEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVV  261 (1381)
T ss_pred             CcEEEcCCCc---EEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEe
Confidence            7887777875   7899999999999999999875432 345667776222 222223444444 347899999999999


Q ss_pred             ECCCCCeEEEEeCCEeccCCC-EE------EEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCcCC
Q psy16863        471 MGIPTPQLIWYKDNKKIKAGD-IF------ALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNS  543 (1075)
Q Consensus       471 ~g~p~~~v~W~~~g~~l~~~~-~~------~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~  543 (1075)
                      .|.|.|.|.|.|||+.|.-.. ++      .|.|..+...|+|.|+|+|.|......+++.|.|.               
T Consensus       262 s~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~---------------  326 (1381)
T KOG4221|consen  262 SGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVL---------------  326 (1381)
T ss_pred             cCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEE---------------
Confidence            999999999999999987553 22      46788899999999999999977777788888887               


Q ss_pred             CCCCCCCCeeeeeccceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceE
Q psy16863        544 LMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEW  623 (1075)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  623 (1075)
                           .+|.|...+.+....++..+.|.|.+.+.|.| .+.|||+|..+..++.+++...+    .|+|..+-..|+|.|
T Consensus       327 -----a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p-~v~w~kNgd~~ipsdy~ki~~~~----~lrIlgi~~sdeg~y  396 (1381)
T KOG4221|consen  327 -----APPGFTKAPTTLVAHESMDIEFECPVSGKPIP-TVRWYKNGDRIIPSDYFKIVGGG----NLRILGIVKSDEGFY  396 (1381)
T ss_pred             -----cCCCCCCCCcceeeeeccceeEeCCCCCCCcc-eEEEEecCcccCcccceEecCCC----CcEEEEEecccchhh
Confidence                 35788888899999999999999999999988 89999999998887777665444    388888999999999


Q ss_pred             EEEEECCCCceeeeeEEEEEeCC-CCcCCCceeecccee-eecCCeEEEEEE-----EecCCCCeEEEEE-CCEEcC---
Q psy16863        624 KCVATSSSGVKQFSAAYVHVLMP-KNYRKPRFVESLKAV-MTDDGLVSFECK-----VVGFPTPTLQWFK-DNEELK---  692 (1075)
Q Consensus       624 ~C~a~n~~g~~~~~~~~l~v~~p-~~~~~p~~~~~~~~~-~~~g~~~~l~C~-----v~g~p~p~v~W~k-~g~~l~---  692 (1075)
                      .|.++|..|.....+ .+.+... .......+-.....+ +...++..+.|.     ..+.+.+.++|+. ++..+.   
T Consensus       397 Qcvaen~~G~a~a~a-~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~  475 (1381)
T KOG4221|consen  397 QCVAENDAGSAQAAA-QLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERL  475 (1381)
T ss_pred             hhhhccCcccccchh-hheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchhhhh
Confidence            999999999876443 3333222 111111111111111 111222222232     2244667899986 332221   


Q ss_pred             -----CCCeEEEeecCCCceE--EEEEEecCceEEEEEEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCe
Q psy16863        693 -----PGDVYQLTGTSSLGSY--CCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEE  765 (1075)
Q Consensus       693 -----~~~~~~~~~~~d~G~Y--~C~a~N~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~  765 (1075)
                           +|-...+......+.|  +|.|.|..|...+++.|.|...                  |.   ++ .. ...+..
T Consensus       476 ~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~------------------pE---gp-~~-~~a~at  532 (1381)
T KOG4221|consen  476 QNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQ------------------PE---GP-VQ-LQAYAT  532 (1381)
T ss_pred             eeccCCceEEEeeecccceeEEEEEeccCcccCCccCCceEEecC------------------CC---CC-cc-cccccc
Confidence                 2323344455677777  6677899999999999999852                  22   11 11 345556


Q ss_pred             EEEEEEEecCCCC----eEEEEECCEEeec-CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy16863        766 FKFTVQVSISPEP----KVSWFRDDQQVVE-SDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLN  840 (1075)
Q Consensus       766 ~~l~C~v~g~p~p----~v~W~k~g~~i~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~  840 (1075)
                      -.++|.+...|++    .|+|||....... +....+.   .....++|.++.+.+...|+|+|.|.+|...++..+.|.
T Consensus       533 s~~ti~v~WepP~~~n~~I~~yk~~ys~~~~~~~~~~~---~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~  609 (1381)
T KOG4221|consen  533 SPTTILVTWEPPPFGNGPITGYKLFYSEDDTGKELRVE---NNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVR  609 (1381)
T ss_pred             CcceEEEEecCCCCCCCCceEEEEEEEcCCCCceEEEe---cCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEE
Confidence            6788999988887    8999998766552 2333332   234589999999999999999999999999999999887


Q ss_pred             e
Q psy16863        841 V  841 (1075)
Q Consensus       841 ~  841 (1075)
                      .
T Consensus       610 T  610 (1381)
T KOG4221|consen  610 T  610 (1381)
T ss_pred             e
Confidence            4

>KOG4221|consensus

Probab=100.00  E-value=9.6e-40  Score=369.36  Aligned_cols=610  Identities=20%  Similarity=0.267  Sum_probs=403.1

Q ss_pred             ceeecceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCCCceecc--CcEEEEecCCeEEEEEceecc-----
Q psy16863        138 FIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFG--NRFRAINRDGRTELNIRRVRR-----  210 (1075)
Q Consensus       138 ~~~~~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~L~I~~~~~-----  210 (1075)
                      |+..+.|.  .+|..+.|.|......        ...+.+.|.+||..+...  .+.+...++   .|.|.++..     
T Consensus        44 f~~ep~d~--~~~~svlLecs~~~~~--------~~~~~i~wkkDg~~l~e~~d~~~~~LsNg---Sl~i~~v~~~kh~~  110 (1381)
T KOG4221|consen   44 FLLEPSDA--MEGSSVLLECSAYAAG--------GTSVKIEWKKDGSQLNEVYDDRRQLLSNG---SLYISSVLASKHNK  110 (1381)
T ss_pred             EEeccccc--ccccceEEeccccccC--------CCCeeEEEccCchhhhhhhhhHHhhccCC---ceeEeeeccccccc
Confidence            44444433  6788888887654432        246789999988766543  444444444   466666655     


Q ss_pred             CCCeEEEEEEEcC-ceeE-EEEEEEeeeccCCCCCccccccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEec
Q psy16863        211 DDGGRYSVTASNE-SGYS-TAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRA  288 (1075)
Q Consensus       211 ~D~G~Y~C~a~n~-~g~~-~~~~~l~V~~~~~~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~  288 (1075)
                      -|.|.|+|.|.-. .|.. +..+.|.+.    ..+.|...+.+..+..|+++.|.|++...          +-..+.|.+
T Consensus       111 ~~eg~Yqc~atv~~~gsi~Sr~a~v~~a----~~~~f~~~~~~~t~~~g~ta~f~c~vn~e----------~~p~i~w~k  176 (1381)
T KOG4221|consen  111 VDEGVYQCLATVEDVGSILSRTAKVALA----GLADFALQPESTTLLYGQTALFSCEVNAE----------PVPTIMWLK  176 (1381)
T ss_pred             ccCceEEEEEEccccceeecceEEEEec----ccCccccCccceeEecCCcEEEEEEEcCc----------cCceeEEec
Confidence            8899999999865 4443 455666654    56788889999999999999999987742          222355655


Q ss_pred             CCCcccc-CCCeEEEeeCCeEEEEEcccCCCCCEEEEEEEEeCCee-EEEEEEEEEecCC--CCCCeeeeecCceeeccC
Q psy16863        289 QGDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGY-STAKFELSVESQV--PDAPAFIRRLHDIAVKVG  364 (1075)
Q Consensus       289 ~~~~~~~-~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~~--~~~p~~~~~~~~~~v~~G  364 (1075)
                      ++ .++. ++++.+..+|   .|.|.++++.|.|.|+|.+++.+.. .+..+.|+|....  .....|+..+....+.+|
T Consensus       177 n~-~pl~~~~r~i~lpsG---~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g  252 (1381)
T KOG4221|consen  177 ND-QPLPLDSRVIVLPSG---ALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEG  252 (1381)
T ss_pred             cc-ccccCCCcEEEcCCC---cEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccC
Confidence            55 4555 4455444444   7999999999999999999996543 5777888887311  122347778889999999


Q ss_pred             CeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeecCCC
Q psy16863        365 TRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKA  444 (1075)
Q Consensus       365 ~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~  444 (1075)
                      +++.|.|.+.|.|.|.|.|.|||+.|.-+. +++...|.. .|.|.+++.+|+|.|+|.|+|..-...+++.|+|+++|.
T Consensus       253 ~~v~leCvvs~~p~p~v~Wlrng~~i~~ds-~rivl~g~~-slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~  330 (1381)
T KOG4221|consen  253 DDVVLECVVSGVPKPSVKWLRNGEKISVDS-YRIVLVGGS-SLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPG  330 (1381)
T ss_pred             CcEEEEEEecCCCCCceEEeeCCeeeeecc-eEEEEeccc-ceEEeccccccCceEEEEecCCCcccccceEEEEEcCCC
Confidence            999999999999999999999999886554 344333332 377999999999999999999766777889999998864


Q ss_pred             CCCCeeeeecce-EEecCCeEEEEEEEECCCCCeEEEEeCCEeccCCCEEE------EEeCCCCCCCcEEEEEEEEecce
Q psy16863        445 YKAPFFTKELEA-ILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFA------LTANPKDPSSLGTYTCEAVNCMG  517 (1075)
Q Consensus       445 ~~~p~~~~~~~~-~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~~~~------l~i~~~~~~d~G~Y~C~a~n~~g  517 (1075)
                           |...+.. ...++..+.|.|.+.|.|.|.|.|+|||..+..++.+.      |.|..+-..|.|.|.|.++|..|
T Consensus       331 -----~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G  405 (1381)
T KOG4221|consen  331 -----FTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAG  405 (1381)
T ss_pred             -----CCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCcc
Confidence                 3333333 36678899999999999999999999999887655442      45555667889999999999999


Q ss_pred             eeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEE------EEEEEecCCCCceEEEEeCCeE
Q psy16863        518 AAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAI------LECQVLVPPWPRSIYWYNKEGV  591 (1075)
Q Consensus       518 ~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~------L~C~~~~~p~p~~v~W~~~~~~  591 (1075)
                      .+...+.+.+..++...+..      ..+        ..+.++.+..-.+-.      ..|. .+.+.+ .++|+.....
T Consensus       406 ~a~a~a~l~vv~~p~~~~s~------~~~--------sap~~lv~~~~~srfi~~tw~~p~~-~~g~i~-~~~v~~~~~~  469 (1381)
T KOG4221|consen  406 SAQAAAQLEVVPQPASASSD------LLP--------SAPRDLVANLVSSRFIQLTWRPPAQ-ISGNIS-TYTVFYKVEG  469 (1381)
T ss_pred             cccchhhheeccCCcccccC------ccc--------cCCcceecccccceeEEEeecCccc-cCCCcc-eEEEEEecCC
Confidence            99999988766433221111      111        111222222222222      3442 233334 7889865544


Q ss_pred             EecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEEeCCCCcCCCceeeccceeeecCCeEEEE
Q psy16863        592 VEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFE  671 (1075)
Q Consensus       592 i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~l~  671 (1075)
                      ........  ..+.+ ..+.+.++...-...++|.|.|..|.... +..+.|..++.  .|..       +.....-.++
T Consensus       470 ~~rer~~~--tss~g-~~~tv~nl~p~t~Y~~rv~A~n~~g~g~s-S~pLkV~t~pE--gp~~-------~~a~ats~~t  536 (1381)
T KOG4221|consen  470 DVRERLQN--TSSPG-IQVTVQNLSPLTMYFFRVRAKNEAGSGES-SAPLKVTTQPE--GPVQ-------LQAYATSPTT  536 (1381)
T ss_pred             chhhhhee--ccCCc-eEEEeeecccceeEEEEEeccCcccCCcc-CCceEEecCCC--CCcc-------ccccccCcce
Confidence            32222211  12223 57888888888888888899999999874 46888888765  2321       2223345688


Q ss_pred             EEEecCCCC----eEEEEECCEEcC-CC---------CeEEEeec--CCCceEEEEEEecCceEEEEEEEEEEeccccCc
Q psy16863        672 CKVVGFPTP----TLQWFKDNEELK-PG---------DVYQLTGT--SSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLS  735 (1075)
Q Consensus       672 C~v~g~p~p----~v~W~k~g~~l~-~~---------~~~~~~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~~  735 (1075)
                      |.+...|++    .++|||...... .+         ..|++.+.  .+...|+|+|.|.+|...++..+.|......++
T Consensus       537 i~v~WepP~~~n~~I~~yk~~ys~~~~~~~~~~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~Ps  616 (1381)
T KOG4221|consen  537 ILVTWEPPPFGNGPITGYKLFYSEDDTGKELRVENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPS  616 (1381)
T ss_pred             EEEEecCCCCCCCCceEEEEEEEcCCCCceEEEecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCC
Confidence            999887766    699998654433 22         23444433  466788999999999999999999986433221


Q ss_pred             hhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEE------ECCEE---------eecCCcEEEEEe
Q psy16863        736 EEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWF------RDDQQ---------VVESDNVKILKE  800 (1075)
Q Consensus       736 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~------k~g~~---------i~~~~~~~~~~~  800 (1075)
                                 .||.      ++.+.          +...-...|.|.      ++|.-         +.....++-...
T Consensus       617 -----------aPP~------Nl~le----------v~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v  669 (1381)
T KOG4221|consen  617 -----------APPQ------NLSLE----------VVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVV  669 (1381)
T ss_pred             -----------CCCc------ceEEE----------ecCCCeEEEEccCCCcccccceEEEEEEEecccCcccccceeec
Confidence                       2332      11111          111222344442      22211         111111211122


Q ss_pred             eCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEe
Q psy16863        801 TLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV  841 (1075)
Q Consensus       801 ~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~  841 (1075)
                      ........+.++.+.-...++..|.|..|....+-.+....
T Consensus       670 ~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT  710 (1381)
T KOG4221|consen  670 KGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVSAET  710 (1381)
T ss_pred             ccchhhhHhhcCCCCceEEEEEEEeccCCCCCcccceeccC
Confidence            21234566777888888888889999888776666555543

>KOG4222|consensus

Probab=100.00  E-value=1.8e-40  Score=373.09  Aligned_cols=436  Identities=25%  Similarity=0.467  Sum_probs=333.1

Q ss_pred             CCCeeeeecceE-EecCCeEEEEEEEECCCCCeEEEEeCCEeccC------------CCEEEEEeCC--CCCCCcEEEEE
Q psy16863        446 KAPFFTKELEAI-LTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA------------GDIFALTANP--KDPSSLGTYTC  510 (1075)
Q Consensus       446 ~~p~~~~~~~~~-~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~------------~~~~~l~i~~--~~~~d~G~Y~C  510 (1075)
                      .+|.++..+.+. +..++.++|.|.++|.|+|+|+|||+|+....            +..+.|.+..  ....|.|.|+|
T Consensus        30 ~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~c  109 (1281)
T KOG4222|consen   30 QPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSC  109 (1281)
T ss_pred             CCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEe
Confidence            445666555554 67788999999999999999999999975432            2222333322  12238999999


Q ss_pred             EEEecceeeEEE-EEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEe-cCCCCceEEEEeC
Q psy16863        511 EAVNCMGAAFST-SRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVL-VPPWPRSIYWYNK  588 (1075)
Q Consensus       511 ~a~n~~g~~~~~-~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~-~~p~p~~v~W~~~  588 (1075)
                      .|.|..|.+.+. +.|.+..                   ....|-..+.+..+..|+.+.|+|.-. +.|.| .+.|.|+
T Consensus       110 vasn~~g~avSr~a~L~vav-------------------lrddfrv~prd~~~a~ge~avlEcgpP~ghpep-tvSw~Kd  169 (1281)
T KOG4222|consen  110 VASNRLGEAVSRGASLIVAV-------------------LRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEP-TVSWVKD  169 (1281)
T ss_pred             eecCccceeeecCceEEEEE-------------------echhcccCcccccccccceeEEeccCCCCCCCC-cceeecC
Confidence            999999987543 3333331                   133455556777888899999999864 56666 8999999


Q ss_pred             CeEEe--cCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEEeCCCCcCCCceeeccce-eeecC
Q psy16863        589 EGVVE--ASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKA-VMTDD  665 (1075)
Q Consensus       589 ~~~i~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~-~~~~g  665 (1075)
                      |..+.  ....+.++..|    .|.|.+++..|+|.|.|++.|.+|..+...+.+.|..+     |.|...... ++..|
T Consensus       170 g~pl~~~~~~~~~lisgG----~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~-----P~f~~rp~~~~v~~g  240 (1281)
T KOG4222|consen  170 GKPLDHYDVPIIALISGG----NLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEK-----PWFWKRPKDLAVLVG  240 (1281)
T ss_pred             CCccccccceeEEEecCC----cEEEeccccCCCceeeeeecccccccccccceeeeccC-----Cccccccccceeecc
Confidence            99886  44455556665    79999999999999999999999999888888888876     445544443 35667


Q ss_pred             CeEEEEEEEecCCCCeEEEEECCEEcCCCCeEEEe-----------ecCCCceEEEEEEecCceEEEEEEEEEEeccccC
Q psy16863        666 GLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT-----------GTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHL  734 (1075)
Q Consensus       666 ~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~-----------~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~  734 (1075)
                      ..+.|.|.+.|.|.|.+.|.|++..+... +|.+.           ...|.|.|.|.|.|.+|....++.++|+      
T Consensus       241 ~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~-ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~------  313 (1281)
T KOG4222|consen  241 AAAEFDCRVGGDPQPTVRWKKDDPSLPRS-RYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQ------  313 (1281)
T ss_pred             cccccccccCCCCCCceeeeccCCCCCcc-ceeeeeccccccccccCCCcccceeeeccccccccccccceEEe------
Confidence            78999999999999999999987776543 33322           1248899999999999999999999998      


Q ss_pred             chhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEee--------cCCcEEEEEeeCcEEE
Q psy16863        735 SEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVV--------ESDNVKILKETLGVCH  806 (1075)
Q Consensus       735 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~--------~~~~~~~~~~~~~~~~  806 (1075)
                                  .+|.|...+.+..+..|..++|.|.+.|+|.|.+.|.|.|....        ...+..+  ..  ...
T Consensus       314 ------------apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~sv--s~--~g~  377 (1281)
T KOG4222|consen  314 ------------APPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSV--SP--TGT  377 (1281)
T ss_pred             ------------cCcccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCcccee--cC--CCC
Confidence                        59999999999999999999999999999999999999875322        1222222  22  227


Q ss_pred             EEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEecCCC-CCCeeee--ecceeecCCCeEEEEEEEEccCCCeeEEEEC
Q psy16863        807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHY-KKPKFLE--ELKAVLSEGGAVNLECKVIGVPQPTLKWFKD  883 (1075)
Q Consensus       807 L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~-~~p~~~~--~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k~  883 (1075)
                      |+|.+++..|.|.|.|...|..|.....+.+.+...-.. .+|..++  +...++.++..+.|.|.+.|.|.|.+.|+|+
T Consensus       378 L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~d  457 (1281)
T KOG4222|consen  378 LTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKD  457 (1281)
T ss_pred             cccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhCCCCCCchhhhc
Confidence            999999999999999999999999888777776543222 3443332  2334567899999999999999999999999


Q ss_pred             CEEcCCCCee-------EEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEecCChh
Q psy16863        884 GRELKAGDIH-------KIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKSQ  933 (1075)
Q Consensus       884 g~~l~~~~~~-------~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~  933 (1075)
                      |-.+...+..       ++.+......|.|.|+|+|.+..|+...+++|.|.+....
T Consensus       458 g~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s  514 (1281)
T KOG4222|consen  458 GCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSS  514 (1281)
T ss_pred             ccccccCCcccceeeeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcc
Confidence            9877654421       2222233345789999999999999999999998766554

>KOG4222|consensus

Probab=100.00  E-value=1.5e-39  Score=365.85  Aligned_cols=447  Identities=24%  Similarity=0.438  Sum_probs=348.9

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCC---CcEEEEEcCCEEEEEEccc--CCCCceeEEE
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN---KIYRTQHDGNFYFIDLSSV--SLFDSGRWTC  422 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~---~~~~~~~~g~~~~L~I~~v--~~~d~G~Y~C  422 (1075)
                      .+|.++..+.++.+.-|++++|.|.+.|.|+|+|+|||+|......   .......+|....|.+.+=  ...|.|.|+|
T Consensus        30 ~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~c  109 (1281)
T KOG4222|consen   30 QPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSC  109 (1281)
T ss_pred             CCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEe
Confidence            5899999999999999999999999999999999999999654322   2223446677666664432  2339999999


Q ss_pred             EEEeCCCce-eeEEEEEeecCCCCCCCeeeeecceE-EecCCeEEEEEEE-ECCCCCeEEEEeCCEeccCC--CEE----
Q psy16863        423 LAENAVGRS-HCSCELSVLVPKAYKAPFFTKELEAI-LTEQGTVSLECKV-MGIPTPQLIWYKDNKKIKAG--DIF----  493 (1075)
Q Consensus       423 ~a~n~~g~~-~~s~~l~V~~~~~~~~p~~~~~~~~~-~~~g~~v~l~C~~-~g~p~~~v~W~~~g~~l~~~--~~~----  493 (1075)
                      .|+|..|.. +..+.|.|.+.+.    .|...++.. +..|+.+.|+|.- .|.|.|.+.|.|||+++...  .++    
T Consensus       110 vasn~~g~avSr~a~L~vavlrd----dfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lis  185 (1281)
T KOG4222|consen  110 VASNRLGEAVSRGASLIVAVLRD----DFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALIS  185 (1281)
T ss_pred             eecCccceeeecCceEEEEEech----hcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEec
Confidence            999999976 3445666665443    344444443 6678999999984 58999999999999998722  222    


Q ss_pred             --EEEeCCCCCCCcEEEEEEEEecceeeEEE-EEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEE
Q psy16863        494 --ALTANPKDPSSLGTYTCEAVNCMGAAFST-SRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAIL  570 (1075)
Q Consensus       494 --~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L  570 (1075)
                        .|.|.+++..|+|.|.|.+.|.+|...+. +++.|.                    .+|.|...+.+..+..|..+.|
T Consensus       186 gG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~--------------------e~P~f~~rp~~~~v~~g~~~~f  245 (1281)
T KOG4222|consen  186 GGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ--------------------EKPWFWKRPKDLAVLVGAAAEF  245 (1281)
T ss_pred             CCcEEEeccccCCCceeeeeecccccccccccceeeec--------------------cCCccccccccceeeccccccc
Confidence              57789999999999999999999986654 567776                    3678888899999999999999


Q ss_pred             EEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEEeCCCCcC
Q psy16863        571 ECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYR  650 (1075)
Q Consensus       571 ~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~  650 (1075)
                      .|.+.|.|.| .+.|.+++..++ ..++.+..+.   .+|.|.+++..|.|.|.|.+.|..|.... .+.+.|..|+.+.
T Consensus       246 ~c~v~GdP~P-~Vrwkk~~~~~P-~~ry~i~~d~---qtl~i~r~tp~deg~y~C~a~n~vG~l~a-sa~ltV~apP~f~  319 (1281)
T KOG4222|consen  246 DCRVGGDPQP-TVRWKKDDPSLP-RSRYSILDDT---QTLRIDRVTPTDEGTYVCPAENLVGGLEA-SATLTVQAPPSFG  319 (1281)
T ss_pred             ccccCCCCCC-ceeeeccCCCCC-ccceeeeecc---ccccccccCCCcccceeeecccccccccc-ccceEEecCcccc
Confidence            9999999988 899999777765 4567776653   48999999999999999999999998774 4688898886543


Q ss_pred             CCceeeccceeeecCCeEEEEEEEecCCCCeEEEEECCEEcC--------CCCeEEE--------e--ecCCCceEEEEE
Q psy16863        651 KPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELK--------PGDVYQL--------T--GTSSLGSYCCVA  712 (1075)
Q Consensus       651 ~p~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~l~--------~~~~~~~--------~--~~~d~G~Y~C~a  712 (1075)
                      +    ......+..|+.++|.|.+.|.|.|.+.|.|.|..-.        ...+..+        +  ...|.|.|.|..
T Consensus       320 k----kp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~  395 (1281)
T KOG4222|consen  320 K----KPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQT  395 (1281)
T ss_pred             c----ccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecc
Confidence            3    1223456678999999999999999999999765421        1112222        1  226889999999


Q ss_pred             EecCceEEEEEEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecC
Q psy16863        713 KNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVES  792 (1075)
Q Consensus       713 ~N~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~  792 (1075)
                      .|.+|.....+.+.+.+..           .....+|.+.....+++..++..+.|.|.+.|.|.|.+.|+|+|-.+...
T Consensus       396 ~~~~~ss~~~a~~~qt~~~-----------~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~  464 (1281)
T KOG4222|consen  396 QTSAGSSLTKAYLEQTDVL-----------TDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNP  464 (1281)
T ss_pred             cccccccccceeEEEEeee-----------ccCCCCceeeecccccccccCcccccChhhhCCCCCCchhhhcccccccC
Confidence            9999988777666665421           11124667777888999999999999999999999999999999877544


Q ss_pred             CcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEec
Q psy16863        793 DNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP  842 (1075)
Q Consensus       793 ~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~  842 (1075)
                      +......   ....|+|.++...|.|.|+|+|.+..|+..-++.|.|...
T Consensus       465 d~~~s~~---~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~  511 (1281)
T KOG4222|consen  465 DSRISQQ---EIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKA  511 (1281)
T ss_pred             Cccccee---eeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhc
Confidence            3222111   2348999999999999999999999999999999999754

>TIGR00864 PCC polycystin cation channel protein

Probab=100.00  E-value=8.3e-27  Score=290.04  Aligned_cols=822  Identities=15%  Similarity=0.171  Sum_probs=469.6

Q ss_pred             EEEEEEcCCcceEeEEEEEEecc-----------------------ccccCCCCCcccccCCCCCccccceEEeccCceE
Q psy16863         38 YTCEAVNCMGAAFSTSRVIARGQ-----------------------QSFLDNDDVPFNRAQGDHPIFGNRFRAINRDGRT   94 (1075)
Q Consensus        38 Y~C~a~n~~g~~~~~~~v~v~~~-----------------------~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~   94 (1075)
                      -...|.|.+++++.++.|.++.+                       +++..+.++.|+|..++++.+           ++
T Consensus       870 ~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~w~~~d~~~~-----------~~  938 (2740)
T TIGR00864       870 VDLMAENNASEANLSLLVQAEEPICGLRAQPHPAARVLMESLVRYSASVEAGSDMTFKWTIDDKPFF-----------TF  938 (2740)
T ss_pred             EEEEEecccceeEEEEEEEeecccccccccCChhheeeeeeEEEeecccccCCcceEEEEeCCeeEE-----------EE
Confidence            34678999999999988887644                       123456788899999988865           45


Q ss_pred             EEEEcccccCCCeEEE--EEEEcCCeeEEEEEEEEEeecCCCcccceeeccee-------EEeeCCeEEEEEEecCCCee
Q psy16863         95 ELNIRRVRRDDGGRYS--VTASNESGYSTAKFELSVESQVPDAPAFIRRLHDI-------AVKVGTRARLLVEIRSPTEI  165 (1075)
Q Consensus        95 ~L~I~~~~~~d~G~Y~--c~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~-------~v~~G~~~~l~c~~~~~~~~  165 (1075)
                      .-.+.++....++.|.  .+|+|..+..+..+.++|+..        .++.++       .+..|..+.|..        
T Consensus       939 ~~~~~n~~y~~a~~~~l~~ta~n~~s~~~~~~~vt~~~~--------~~m~~l~v~~~p~v~~~~~~~~~~~-------- 1002 (2740)
T TIGR00864       939 QNTVFNVIYQHAAVFKLSLTAMNHVSNLTEDFNVTVDRL--------NPMQGLQVKGVPAVLPPGATLALTA-------- 1002 (2740)
T ss_pred             ecceEEEEeecccEEEEEEEEeccccceEEEEEEEehhc--------ccccccEEecCccccCCCceEEEee--------
Confidence            6677888999999995  899999998887777777632        223333       344566666543        


Q ss_pred             EEEEccCCCeeEEEeeCCCceec-------cCcEEEEecCCeEEEEEceec--cCCCeEEEE--EEEcCceeEEEEEEEe
Q psy16863        166 KCQFDLNNTIPFSFRAQGDHPIF-------GNRFRAINRDGRTELNIRRVR--RDDGGRYSV--TASNESGYSTAKFELS  234 (1075)
Q Consensus       166 ~c~~~~~~~~~~~W~~~~~~~~~-------~~~~~~~~~~~~~~L~I~~~~--~~D~G~Y~C--~a~n~~g~~~~~~~l~  234 (1075)
                      ...+++.....|.|.++|+....       ...+...+..-...|.=++++  ....|.|+.  .|+|..|..+..+.+.
T Consensus      1003 ~~~vd~~~~~~~~w~fgDG~~~~~~~~~py~~~~~~~~~~~~q~l~eqnptH~Y~~~G~YTVtLtVsN~~~~it~~i~Vs 1082 (2740)
T TIGR00864      1003 GVLIDMAVEAAFLWNFGDGEQALFEFKPPYNESFPCPDPSPAQVLLEHNVMHIYAAPGEYLATVLASNAFENISQQINMS 1082 (2740)
T ss_pred             eeEeecccceEEEEEeCCCCeeEEeccCCCcccccCCCCccceeecccCcceEECCCCcEEEEEEEEcCCCccceEEEEE
Confidence            33456677889999999876332       222322222223345555555  566799954  5688888888888888


Q ss_pred             eeccCCCCCccccccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCcccc-CCCeEEEeeCCeEEEEEc
Q psy16863        235 VESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF-GNRFRAINRDGRTELNIR  313 (1075)
Q Consensus       235 V~~~~~~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~L~I~  313 (1075)
                      |..   ..|.+.....+..+..|+++.|.....+.+         ....|.|.++|+.... +..-...+     ++   
T Consensus      1083 V~~---~~p~v~~~~~p~~~~~g~tv~F~~~ss~s~---------~~~~y~WdFGDGs~~~t~~~~~~~H-----tY--- 1142 (2740)
T TIGR00864      1083 VRA---ILPRVAIGTEDGLLLAGKPADFEAHPLPSP---------GGIHYEWDFGDGSALLQGRQPAAAH-----TF--- 1142 (2740)
T ss_pred             Eec---ccceeeeecCcccccCCceEEEeecccCCC---------CCcEEEeECCCCCcccccCCCcceE-----Ec---
Confidence            863   334455555666778899998876543321         3467899998876542 11101111     11   


Q ss_pred             ccCCCCCEEEEE--EEEeCCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecC
Q psy16863        314 RVRRDDGGRYSV--TASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLE  391 (1075)
Q Consensus       314 ~~~~~d~G~Y~C--~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~  391 (1075)
                          ...|.|+.  .+.|..|.......+.+...   .+.+.... ......|.++++........+....|-+++....
T Consensus      1143 ----~~~GtYtV~LTV~n~vgs~a~~t~v~v~~~---v~~itad~-s~~te~gaPlTV~~~~ssG~~~tW~WdFGDGtts 1214 (2740)
T TIGR00864      1143 ----AKRGPFHVCLEVNNTISGAAACADMFAFEE---IEGLSADM-SLATELGAATTVRAALQSGDNITWTFDMGDGKSL 1214 (2740)
T ss_pred             ----cCCccEEEEEEEEcCCCCceeeEEEEEecc---cCceeeec-cCCccCCCceEEEEeecCCCccEEEEecCCCCcc
Confidence                45577754  45566665544444444421   11121111 1223446677766555333344555544443211


Q ss_pred             CCCcEEEEEcCCEEEEEEcccCCCCceeEEEE--EEeCCCceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEE
Q psy16863        392 ENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCL--AENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECK  469 (1075)
Q Consensus       392 ~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~--a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~  469 (1075)
                      ...      ...     ..+ +....|.|+..  +.|..|....+..+.|.+.+..     ...+......+..+.|.-.
T Consensus      1215 t~~------~~t-----~~H-tY~~~GtYTVtLTvtN~~G~~sts~~V~V~v~~V~-----g~~Ps~c~g~~~~v~Fta~ 1277 (2740)
T TIGR00864      1215 SGP------EAT-----VEH-KYAKAGNCTVNIGAANAAGHGARIIHVEVFVFEVA-----GIEPAACIGEHADANFRAR 1277 (2740)
T ss_pred             ccC------CCC-----cee-EcCCCceEEEEEEEEcCCCCceeEEEEEEEeeecc-----cccCccccCCCcceEEEEE
Confidence            100      000     011 23457988765  6688887666655555443211     1111122233346888888


Q ss_pred             EECCCCC-eEEEEeCCEeccCC----CEEEEEeCCCCCCCcEEEEEEEE--ecceeeEEEEEEEEeccccccCCCCCCcC
Q psy16863        470 VMGIPTP-QLIWYKDNKKIKAG----DIFALTANPKDPSSLGTYTCEAV--NCMGAAFSTSRVIARGQQSFLDNDDVPFN  542 (1075)
Q Consensus       470 ~~g~p~~-~v~W~~~g~~l~~~----~~~~l~i~~~~~~d~G~Y~C~a~--n~~g~~~~~~~v~v~~~~~~~~~~~~~~~  542 (1075)
                      +.|.|.. .+.|.+++......    .....+     -...|.|+....  |..+.......+.+.              
T Consensus      1278 vsg~~~~y~y~WdFGDGt~~tt~~~~p~vtHT-----Yt~~GtYtVsLTVtn~vgk~~~it~VtV~-------------- 1338 (2740)
T TIGR00864      1278 VSGNAAHYLFDWSFGDGSPNETHHGCPGISHN-----FRGNGTFPLALTISSGVNKAHFFTQICVE-------------- 1338 (2740)
T ss_pred             ecCCCcceEEEeeCCCCCccccccCCCcceEE-----cCCCCeEEEEEEEEcCCcceeEEEEEEec--------------
Confidence            8887765 57797765432211    111111     124689977655  443433222222221              


Q ss_pred             CCCCCCCCCeeeeeccceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEe----cCCcEEEEEcCCceEEEEEeeeeec
Q psy16863        543 SLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVE----ASDKYHIMADGLGGYSIEINYLEAV  618 (1075)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~----~~~~~~~~~~~~~~~~L~i~~~~~~  618 (1075)
                           .+.+.+........+..|..+.|.-.+... .+.++.|.++++...    ........+...+.|++++.     
T Consensus      1339 -----P~v~~vt~t~s~~~v~lG~tV~Ftatss~g-~~~sw~WDFGDG~ts~t~st~qNptHTY~~pGtYTVTLT----- 1407 (2740)
T TIGR00864      1339 -----PELGKISLQAEKQFFALGDEAQFQACAEPE-FNYRYEWDFGGEEAAPLPAAGAEVTFIYNDPGCYLVTVA----- 1407 (2740)
T ss_pred             -----ccccceEecccccccccCCeEEEEEecCCC-CcEEEEEEeCCCCccccccCCCcceEEcCCCceEEEEEE-----
Confidence                 011222222333345678899998766532 456899999876421    12233333344444444443     


Q ss_pred             CCceEEEEEECCCCceeeeeEEEEEeCCCCcCCCceeecccee--eecCCeEEEEEEEecCCCCeEEEEECCEEcCCCCe
Q psy16863        619 DDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAV--MTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDV  696 (1075)
Q Consensus       619 d~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~--~~~g~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~  696 (1075)
                              |.|..|... ....+.|..|.  ..+.|.......  +..+..+.|.-...|.| .++.|.+++.....+..
T Consensus      1408 --------VtN~~gs~T-~s~~I~V~~Pv--~~~~ft~ngT~g~~ltlg~pv~Ftd~StGt~-~Sy~WdFGDGstst~qn 1475 (2740)
T TIGR00864      1408 --------ASNNISAAN-DSALIEVLEPV--GATSFKHNGSHGNNLELGQPYLFSAFGRARN-ASYLWDFGDGGLLEGPE 1475 (2740)
T ss_pred             --------EECCCccee-eeeEEEEecCC--CcceeeecCCcccccccCcceEEeecCCCCc-eEEEEECCCCCccCccc
Confidence                    667765443 33456665542  122333221111  22233444544334443 47999886655444444


Q ss_pred             EEEeecCCCceEEE--EEEecCceEEEEEEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEec
Q psy16863        697 YQLTGTSSLGSYCC--VAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSI  774 (1075)
Q Consensus       697 ~~~~~~~d~G~Y~C--~a~N~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g  774 (1075)
                      ..... ...|.|+.  +|.|..|....+..++|.+.                 ...|........+..+.++.|+.....
T Consensus      1476 ptHtY-~~~GtYtVtLTvtN~~Gsst~T~~VtV~~p-----------------V~~~tinas~~~vpl~~sV~Fta~~s~ 1537 (2740)
T TIGR00864      1476 ILHAF-NSPGDFNIRLAAANEVGKNEATLNVAVKAR-----------------VRGLTINASLTNVPLNGSVHFEAHLDA 1537 (2740)
T ss_pred             eEEEc-CCCceEEEEEEEECCCCceEEEEEEEEecc-----------------ccceEEcCCCccccccceEEEEEEccC
Confidence            44333 46899954  67899999888888887642                 223333333445667788999876655


Q ss_pred             CCCCeEEEEECCEEe--ecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEecCCCCCCeeee
Q psy16863        775 SPEPKVSWFRDDQQV--VESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLE  852 (1075)
Q Consensus       775 ~p~p~v~W~k~g~~i--~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~  852 (1075)
                      .....++|..++.-.  ..+......+...|.+..++.             |.|..|....+..+.|+.+-.  .-.+..
T Consensus      1538 Gs~v~ysWdFGDg~ts~~~npt~~yTY~spGtYtVtLT-------------vtN~~Gs~~~T~~i~V~~~I~--GlqI~~ 1602 (2740)
T TIGR00864      1538 GDDVRFSWILCDHCTPIFGGNTIFYTFRSVGTFNIIVT-------------AENDVGAAQASIFLFVLQEIE--GLQILG 1602 (2740)
T ss_pred             CCceeEEEEeCCCCccccCCCceEEeecCCceEEEEEE-------------EecCCCccceeEEEEEeeccc--ceEEEe
Confidence            556689998765322  122222233333444444444             889999998888888876421  112221


Q ss_pred             e-----------c-ceeecCCCeEEEEEEEEccCCCeeEEEE------CCEEc-CCCCeeEEEECCCCceeeEEEE--EE
Q psy16863        853 E-----------L-KAVLSEGGAVNLECKVIGVPQPTLKWFK------DGREL-KAGDIHKIISGEDGTCCLGIYT--CE  911 (1075)
Q Consensus       853 ~-----------~-~~~~~~g~~~~L~C~v~g~p~p~v~W~k------~g~~l-~~~~~~~i~~~~~~~~d~G~Y~--C~  911 (1075)
                      .           + ...+..+..+.|...+....+..++|..      ||... ..|....+..     .++|.|.  ..
T Consensus      1603 ~~~~gg~~~~~~~~~~~~~t~~~v~l~~~~~~GTnvsysW~~~~~n~~dg~~~~~tGk~~~vt~-----~~pG~Y~VtL~ 1677 (2740)
T TIGR00864      1603 ETAEGGGGGVQELDGCYFETNHTVQFHAGFKDGTNLSFSWNAILDNEPDGPAFAGSGKGAKLNP-----LEAGPCDIFLQ 1677 (2740)
T ss_pred             ecccccCCcccccccceeccCCEEEeeeccCCCCeeEEEEEEecCCCCCCccccccCceeEEec-----CCCceEEEEEE
Confidence            1           1 1346678899999988777777899955      12111 1222233322     2379994  59


Q ss_pred             EEeCCeeEEEEEEEEEecCChhhhhhhcccceeeecCCCcceeeeceeeeEeeccCCccccceEEEEEc-CEEEEEEEe-
Q psy16863        912 AHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALIVKDPSLSTIQEEGTSEIYDTPMASIEEREISFSFD-GKEVSVSLY-  989 (1075)
Q Consensus       912 a~N~~G~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~-g~~~~~~~~-  989 (1075)
                      |+|..|..+.+..+.|+++...+........+.+            +..+.|...+..-....|+|.++ |..+..+.+ 
T Consensus      1678 aSN~vG~~t~s~~i~v~epi~~L~L~aS~~~aav------------n~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~p~ 1745 (2740)
T TIGR00864      1678 AANLLGQATADCTIDFLEPAGNLMLQASDNPAAV------------NALINLSAELAEGSGLQYRWFLEEGDDLETSEPF 1745 (2740)
T ss_pred             EeecccceeeEEEEEEEEEcCceEEeccCCcccC------------CCeEEEEEEecCCCCcEEEEEECCCCCcccCCCc
Confidence            9999999999999999987766654333332222            22333433344345666888875 443332322 


Q ss_pred             eCCC-CChHHHHHHHHHhhhhhhhcccccceeecC
Q psy16863        990 ETPD-LTEEEAIKVVEMYADELSEHISDKNMIELP 1023 (1075)
Q Consensus       990 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1023 (1075)
                      .+|. .+++...+.+.+.+...++.++..|.|++|
T Consensus      1746 ~tHtf~~~G~y~VtVta~N~vss~~~s~~V~Vqep 1780 (2740)
T TIGR00864      1746 MSHSFPSAGLHLVTMKAFNELGSANASEEVDVQEP 1780 (2740)
T ss_pred             eEEEccCCceEEEEEEEEccccccceeEEEEEEec
Confidence            3444 346666666778888888888888888888

Note: this model has been restricted to the amino half because for technical reasons.

>TIGR00864 PCC polycystin cation channel protein

Probab=99.97  E-value=4.4e-24  Score=266.09  Aligned_cols=885  Identities=15%  Similarity=0.161  Sum_probs=474.2

Q ss_pred             CceEEEeeCCEEeecCcEEEEeeCCCCCCCCeEEEE--EEEcCCcceEeEEEEEE-----------eccccccC------
Q psy16863          5 TPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTC--EAVNCMGAAFSTSRVIA-----------RGQQSFLD------   65 (1075)
Q Consensus         5 ~p~v~W~k~g~~l~~~~~~~l~i~~~~~~D~G~Y~C--~a~n~~g~~~~~~~v~v-----------~~~~~~~~------   65 (1075)
                      .|.++|+-|+++.=.-....|   ++.-..++.|..  .|.|..+..+....|+|           .|.|.++.      
T Consensus       923 ~~~~~w~~~d~~~~~~~~~~~---n~~y~~a~~~~l~~ta~n~~s~~~~~~~vt~~~~~~m~~l~v~~~p~v~~~~~~~~  999 (2740)
T TIGR00864       923 DMTFKWTIDDKPFFTFQNTVF---NVIYQHAAVFKLSLTAMNHVSNLTEDFNVTVDRLNPMQGLQVKGVPAVLPPGATLA  999 (2740)
T ss_pred             cceEEEEeCCeeEEEEecceE---EEEeecccEEEEEEEEeccccceEEEEEEEehhcccccccEEecCccccCCCceEE
Confidence            478999999986522211111   233456788865  78899988887776654           34443332      


Q ss_pred             ---------CCCCcccccCCCCCc----cccceEEe--ccC-c-eEEEEEcccc--cCCCeEEE--EEEEcCCeeEEEEE
Q psy16863         66 ---------NDDVPFNRAQGDHPI----FGNRFRAI--NRD-G-RTELNIRRVR--RDDGGRYS--VTASNESGYSTAKF  124 (1075)
Q Consensus        66 ---------~~~v~~~~~~~g~~~----~~~~~~~~--~~~-~-~~~L~I~~~~--~~d~G~Y~--c~a~n~~g~~~~~~  124 (1075)
                               ..++.|.|.-|+-..    +...|...  -.+ . ...|.=++++  +...|.|+  ..|.|.+|......
T Consensus      1000 ~~~~~~vd~~~~~~~~w~fgDG~~~~~~~~~py~~~~~~~~~~~~q~l~eqnptH~Y~~~G~YTVtLtVsN~~~~it~~i 1079 (2740)
T TIGR00864      1000 LTAGVLIDMAVEAAFLWNFGDGEQALFEFKPPYNESFPCPDPSPAQVLLEHNVMHIYAAPGEYLATVLASNAFENISQQI 1079 (2740)
T ss_pred             EeeeeEeecccceEEEEEeCCCCeeEEeccCCCcccccCCCCccceeecccCcceEECCCCcEEEEEEEEcCCCccceEE
Confidence                     134567775543221    11111100  000 0 0122223332  46689996  57789988877777


Q ss_pred             EEEEeecCCCcccceeecceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCCCceeccCcEEEEecCCeEEEE
Q psy16863        125 ELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELN  204 (1075)
Q Consensus       125 ~l~V~~~~~~~p~~~~~~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~L~  204 (1075)
                      .+.|...   .|.+.....+..+..|+++.|.....+.+         ....+.|.|+|+......+.           .
T Consensus      1080 ~VsV~~~---~p~v~~~~~p~~~~~g~tv~F~~~ss~s~---------~~~~y~WdFGDGs~~~t~~~-----------~ 1136 (2740)
T TIGR00864      1080 NMSVRAI---LPRVAIGTEDGLLLAGKPADFEAHPLPSP---------GGIHYEWDFGDGSALLQGRQ-----------P 1136 (2740)
T ss_pred             EEEEecc---cceeeeecCcccccCCceEEEeecccCCC---------CCcEEEeECCCCCcccccCC-----------C
Confidence            7777642   23344455566778899999987754432         23578999988754321110           0


Q ss_pred             EceeccCCCeEEEE--EEEcCceeEEEEEEEeeeccCCCCCccccccccceeeccceeEEEEEecCCCceEEEEecCCCe
Q psy16863        205 IRRVRRDDGGRYSV--TASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTI  282 (1075)
Q Consensus       205 I~~~~~~D~G~Y~C--~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~  282 (1075)
                      -...+....|.|+.  .+.|..|.......+.+...+   +.+.... ......|.++++....          ..+.++
T Consensus      1137 ~~~HtY~~~GtYtV~LTV~n~vgs~a~~t~v~v~~~v---~~itad~-s~~te~gaPlTV~~~~----------ssG~~~ 1202 (2740)
T TIGR00864      1137 AAAHTFAKRGPFHVCLEVNNTISGAAACADMFAFEEI---EGLSADM-SLATELGAATTVRAAL----------QSGDNI 1202 (2740)
T ss_pred             cceEEccCCccEEEEEEEEcCCCCceeeEEEEEeccc---Cceeeec-cCCccCCCceEEEEee----------cCCCcc
Confidence            01346677888844  556776665555555544321   1111111 1112234444443222          235567


Q ss_pred             eeEEecCCCccccCCCeEEEeeCCeEEEEEcccCCCCCEEEEE--EEEeCCeeEEEEEEEEEecCCCCCCeeeeecCcee
Q psy16863        283 PFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSV--TASNESGYSTAKFELSVESQVPDAPAFIRRLHDIA  360 (1075)
Q Consensus       283 ~~~w~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C--~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~  360 (1075)
                      .|.|.++|+....+..-.           ..+.. ...|.|+.  .|.|..|.......+.|..    .+ +........
T Consensus      1203 tW~WdFGDGttst~~~~t-----------~~HtY-~~~GtYTVtLTvtN~~G~~sts~~V~V~v----~~-V~g~~Ps~c 1265 (2740)
T TIGR00864      1203 TWTFDMGDGKSLSGPEAT-----------VEHKY-AKAGNCTVNIGAANAAGHGARIIHVEVFV----FE-VAGIEPAAC 1265 (2740)
T ss_pred             EEEEecCCCCccccCCCC-----------ceeEc-CCCceEEEEEEEEcCCCCceeEEEEEEEe----ee-cccccCccc
Confidence            888888887654321100           00111 34577754  5678888655555544432    11 111111122


Q ss_pred             eccCCeEEEEEEEecCCCc-EEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863        361 VKVGTRARLLVEIRSPTEI-KIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV  439 (1075)
Q Consensus       361 v~~G~~v~l~C~~~g~p~~-~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V  439 (1075)
                      ...+..+.|...+.+++.. .+.|-+++......      ..+.....+    +....|.|+..++...+.........|
T Consensus      1266 ~g~~~~v~Fta~vsg~~~~y~y~WdFGDGt~~tt------~~~~p~vtH----TYt~~GtYtVsLTVtn~vgk~~~it~V 1335 (2740)
T TIGR00864      1266 IGEHADANFRARVSGNAAHYLFDWSFGDGSPNET------HHGCPGISH----NFRGNGTFPLALTISSGVNKAHFFTQI 1335 (2740)
T ss_pred             cCCCcceEEEEEecCCCcceEEEeeCCCCCcccc------ccCCCcceE----EcCCCCeEEEEEEEEcCCcceeEEEEE
Confidence            3334568888888776643 57787766432111      000000011    345788888776544333332333334


Q ss_pred             ecCCCCCCCeeeeec-ceEEecCCeEEEEEEEECCCCCeEEEEeCCEecc----CCCEEEEEeCCCCCCCcEEEEE--EE
Q psy16863        440 LVPKAYKAPFFTKEL-EAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK----AGDIFALTANPKDPSSLGTYTC--EA  512 (1075)
Q Consensus       440 ~~~~~~~~p~~~~~~-~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~----~~~~~~l~i~~~~~~d~G~Y~C--~a  512 (1075)
                      .+.|..  +.+.... ...+..|.++.|.-...+.....+.|.+++..-.    .+.....++.     ..|.|+.  .|
T Consensus      1336 tV~P~v--~~vt~t~s~~~v~lG~tV~Ftatss~g~~~sw~WDFGDG~ts~t~st~qNptHTY~-----~pGtYTVTLTV 1408 (2740)
T TIGR00864      1336 CVEPEL--GKISLQAEKQFFALGDEAQFQACAEPEFNYRYEWDFGGEEAAPLPAAGAEVTFIYN-----DPGCYLVTVAA 1408 (2740)
T ss_pred             Eecccc--cceEecccccccccCCeEEEEEecCCCCcEEEEEEeCCCCccccccCCCcceEEcC-----CCceEEEEEEE
Confidence            444322  1222111 2235668888888766543345888988765421    1122222322     3588865  45


Q ss_pred             EecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccc-eEeecCCeEEEEEEEecCCCCceEEEEeCCeE
Q psy16863        513 VNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVEN-VKAKIGTSAILECQVLVPPWPRSIYWYNKEGV  591 (1075)
Q Consensus       513 ~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~  591 (1075)
                      .|..|....+..+.|..+                 .+...|...... ..+..|..+.|.-...+.  +.++.|.++++.
T Consensus      1409 tN~~gs~T~s~~I~V~~P-----------------v~~~~ft~ngT~g~~ltlg~pv~Ftd~StGt--~~Sy~WdFGDGs 1469 (2740)
T TIGR00864      1409 SNNISAANDSALIEVLEP-----------------VGATSFKHNGSHGNNLELGQPYLFSAFGRAR--NASYLWDFGDGG 1469 (2740)
T ss_pred             ECCCcceeeeeEEEEecC-----------------CCcceeeecCCcccccccCcceEEeecCCCC--ceEEEEECCCCC
Confidence            677776666666776521                 011122111110 012334455554333333  468999998886


Q ss_pred             EecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEEeCCCCcCCCceeeccceeeecCCeEEEE
Q psy16863        592 VEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFE  671 (1075)
Q Consensus       592 i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~l~  671 (1075)
                      ..........+...+.|++++.             +.|..|.... ...+.|..|.  ....+ ......+..++.+.|+
T Consensus      1470 tst~qnptHtY~~~GtYtVtLT-------------vtN~~Gsst~-T~~VtV~~pV--~~~ti-nas~~~vpl~~sV~Ft 1532 (2740)
T TIGR00864      1470 LLEGPEILHAFNSPGDFNIRLA-------------AANEVGKNEA-TLNVAVKARV--RGLTI-NASLTNVPLNGSVHFE 1532 (2740)
T ss_pred             ccCccceEEEcCCCceEEEEEE-------------EECCCCceEE-EEEEEEeccc--cceEE-cCCCccccccceEEEE
Confidence            5444444444444444444443             7888888653 3455555442  11111 1112234456678888


Q ss_pred             EEEecCCCCeEEEEECCEEc-CCCCeEEEeecCCCceE--EEEEEecCceEEEEEEEEEEeccccCchhhhhhhccCCCC
Q psy16863        672 CKVVGFPTPTLQWFKDNEEL-KPGDVYQLTGTSSLGSY--CCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKA  748 (1075)
Q Consensus       672 C~v~g~p~p~v~W~k~g~~l-~~~~~~~~~~~~d~G~Y--~C~a~N~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~  748 (1075)
                      -........++.|.+++... ..............|.|  +.+|.|..|....+..+.|++....+      .+... ..
T Consensus      1533 a~~s~Gs~v~ysWdFGDg~ts~~~npt~~yTY~spGtYtVtLTvtN~~Gs~~~T~~i~V~~~I~Gl------qI~~~-~~ 1605 (2740)
T TIGR00864      1533 AHLDAGDDVRFSWILCDHCTPIFGGNTIFYTFRSVGTFNIIVTAENDVGAAQASIFLFVLQEIEGL------QILGE-TA 1605 (2740)
T ss_pred             EEccCCCceeEEEEeCCCCccccCCCceEEeecCCceEEEEEEEecCCCccceeEEEEEeecccce------EEEee-cc
Confidence            65543344589999855322 22222223334567999  55679999999888888887521110      00000 00


Q ss_pred             CeE---EeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEE--E
Q psy16863        749 PKF---IEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKC--I  823 (1075)
Q Consensus       749 p~~---~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C--~  823 (1075)
                      +..   ...+....+..|..+.|+..+....+..++|-..+..-..+..+   ........++.     .+.|.|..  .
T Consensus      1606 ~gg~~~~~~~~~~~~~t~~~v~l~~~~~~GTnvsysW~~~~~n~~dg~~~---~~tGk~~~vt~-----~~pG~Y~VtL~ 1677 (2740)
T TIGR00864      1606 EGGGGGVQELDGCYFETNHTVQFHAGFKDGTNLSFSWNAILDNEPDGPAF---AGSGKGAKLNP-----LEAGPCDIFLQ 1677 (2740)
T ss_pred             cccCCcccccccceeccCCEEEeeeccCCCCeeEEEEEEecCCCCCCccc---cccCceeEEec-----CCCceEEEEEE
Confidence            000   01122345677888999988876677799996511100000000   01111222222     45566654  5


Q ss_pred             EEeCCceEEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCCeeEEEE-CCEEcCCCCeeEEEECCCCc
Q psy16863        824 ATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFK-DGRELKAGDIHKIISGEDGT  902 (1075)
Q Consensus       824 A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k-~g~~l~~~~~~~i~~~~~~~  902 (1075)
                      |+|.+|....+..+.|+.|..-..   +..-...+..|+.++|...+.+.+..+++|.. ||...........+....  
T Consensus      1678 aSN~vG~~t~s~~i~v~epi~~L~---L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~p~~tHtf~~-- 1752 (2740)
T TIGR00864      1678 AANLLGQATADCTIDFLEPAGNLM---LQASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETSEPFMSHSFPS-- 1752 (2740)
T ss_pred             EeecccceeeEEEEEEEEEcCceE---EeccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccCCCceEEEccC--
Confidence            889999999999999987642211   11112235678999999999888899999975 453332222222222222  


Q ss_pred             eeeEEEEE--EEEeCCeeEEEEEEEEEecCChhhhhhhcccceeeecCCCcceeeeceeeeEeeccCCccccceEEEEE-
Q psy16863        903 CCLGIYTC--EAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALIVKDPSLSTIQEEGTSEIYDTPMASIEEREISFSF-  979 (1075)
Q Consensus       903 ~d~G~Y~C--~a~N~~G~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~-  979 (1075)
                        .|.|.+  .|.|..|+...+..+.|+++...+.+..        .+.....+.+.+....|...++  .+..++|.| 
T Consensus      1753 --~G~y~VtVta~N~vss~~~s~~V~VqepV~GL~i~~--------~~~~~~~~~~ag~~v~F~a~vs--tGsnVsw~W~ 1820 (2740)
T TIGR00864      1753 --AGLHLVTMKAFNELGSANASEEVDVQEPISGLKIRA--------ADAGEQNFFAADSSVCFQGELA--TGTNVSWCWA 1820 (2740)
T ss_pred             --CceEEEEEEEEccccccceeEEEEEEeccccceEec--------CCCCcccceecCcEEEEEEEcc--CCCeeEEEEE
Confidence              699955  9999999999999999988766554321        1111222344566677777766  566666666 


Q ss_pred             -cCEEEEEEEeeCCCCChHHHHHH---HHHhhhhhhhcccccceeecCCeeEEeeccc
Q psy16863        980 -DGKEVSVSLYETPDLTEEEAIKV---VEMYADELSEHISDKNMIELPPLRFTKESSR 1033 (1075)
Q Consensus       980 -~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1075)
                       +|..-...  -....|..++|.|   +.+.++..+..++-.+.||+|........+.
T Consensus      1821 f~~g~s~~g--k~v~~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~ 1876 (2740)
T TIGR00864      1821 IDGGSSKMG--KHACMTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKASK 1876 (2740)
T ss_pred             eCCCCcccc--ceeEEecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEeccc
Confidence             44331111  1112556666665   4556777788888899999998655555443

Note: this model has been restricted to the amino half because for technical reasons.

>KOG4194|consensus

Probab=99.96  E-value=3e-28  Score=256.87  Aligned_cols=280  Identities=22%  Similarity=0.359  Sum_probs=225.2

Q ss_pred             CcccceeecceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCCCceec-----cCcEEEEecCC--------e
Q psy16863        134 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF-----GNRFRAINRDG--------R  200 (1075)
Q Consensus       134 ~~p~~~~~~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~~~~~~-----~~~~~~~~~~~--------~  200 (1075)
                      +.|.+...+.++....|+.++|+|.+.++.        ..+..+.|+++...+..     .-++......+        .
T Consensus       502 pkpqI~~qPe~~~al~g~nirftC~a~sss--------asplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~  573 (873)
T KOG4194|consen  502 PKPQIVTQPETVSALIGENIRFTCNAYSSS--------ASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYT  573 (873)
T ss_pred             CCcceecCchHhhhhhccceEEEEEeccCC--------CCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhh
Confidence            467788888888888899999999988753        35678999998753221     11222222111        3


Q ss_pred             EEEEEceeccCCCeEEEEEEEcCceeE-EEEEEEeeeccCCCCCccccccccceeeccceeEEEEEecCCCceEEEEecC
Q psy16863        201 TELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLN  279 (1075)
Q Consensus       201 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~  279 (1075)
                      ..|.+.|++..|+|.|+|.++|..|+. +..++++|.    ..|.|.+.|.++++..|+.+.|.|.+.+          .
T Consensus       574 ~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~----~~PsFtktP~dltl~tg~mArl~CaAtG----------~  639 (873)
T KOG4194|consen  574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVN----QAPSFTKTPEDLTLRTGQMARLECAATG----------H  639 (873)
T ss_pred             heeeeeeeecccCceEEEEEecccCcchhheeEEEee----ccCccccCcccceeecccceeeeeeccC----------C
Confidence            479999999999999999999999987 668888887    5699999999999999999999876654          5


Q ss_pred             CCeeeEEecCCCcccc---CCCeEEEeeCCeEEEEEcccCCCCCEEEEEEEEeCCeeEEEEEEEEEecCCCCCCeeeeec
Q psy16863        280 NTIPFSFRAQGDHPIF---GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRL  356 (1075)
Q Consensus       280 ~~~~~~w~~~~~~~~~---~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~  356 (1075)
                      |.+.+.|.+.|+...+   ..|..+..+++  .+.|.+++.+|+|.|+|.|.|.+|..+..+.|+|..    .|.|..++
T Consensus       640 P~PeIawqkdggtdFPAA~eRRl~Vmpedd--~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e----~p~f~~PL  713 (873)
T KOG4194|consen  640 PRPEIAWQKDGGTDFPAARERRLHVMPEDD--VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLE----TPSFSIPL  713 (873)
T ss_pred             CCcceeehhcCCCCCchhhhheeeecCCCC--EEEEecccccccceeEEeeeccccceeeceEEEEec----CCcccccc
Confidence            6778889888887655   33444544444  699999999999999999999999999999999995    88888899


Q ss_pred             CceeeccCCeEEEEEEEecCCC-cEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEE
Q psy16863        357 HDIAVKVGTRARLLVEIRSPTE-IKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC  435 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p~-~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~  435 (1075)
                      .+..|..|+.+.|.|...+.|+ |.+.|+|++++|.-.++.....++  ..|.+.+...+|+|.|+|..+|..|......
T Consensus       714 ~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~d--Qllvv~~~~~~daG~yTcem~~~~~~~~~~i  791 (873)
T KOG4194|consen  714 EDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGD--QLLVVKENLVEDAGIYTCEMSNTLGTERIHI  791 (873)
T ss_pred             cceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCC--eEEEEEehhhhhcceEEEEEEeeccceeeEE
Confidence            9999999999999999988876 999999999998755554433333  3478889999999999999999999887766


Q ss_pred             EEEeecCC
Q psy16863        436 ELSVLVPK  443 (1075)
Q Consensus       436 ~l~V~~~~  443 (1075)
                      .+.+...+
T Consensus       792 ~l~~~~~~  799 (873)
T KOG4194|consen  792 CLLVYQKK  799 (873)
T ss_pred             EEEEeecC
Confidence            66665543

>KOG4194|consensus

Probab=99.96  E-value=1.9e-27  Score=250.87  Aligned_cols=272  Identities=23%  Similarity=0.434  Sum_probs=214.6

Q ss_pred             CCCCCCCCeeeeeccceEeecCCeEEEEEEEecC-CCCceEEEEeCCeEEecC-----CcEE-EEEcCC------ceEEE
Q psy16863        544 LMPPGPAPIFIKEVENVKAKIGTSAILECQVLVP-PWPRSIYWYNKEGVVEAS-----DKYH-IMADGL------GGYSI  610 (1075)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~-p~p~~v~W~~~~~~i~~~-----~~~~-~~~~~~------~~~~L  610 (1075)
                      ++...+.|.+...|..+....|+.++|+|.+.+. ..|.++.|.+++...+.-     -.+. ...+|.      -...|
T Consensus       497 vC~DspkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L  576 (873)
T KOG4194|consen  497 VCDDSPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAIL  576 (873)
T ss_pred             eecCCCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhhee
Confidence            3445577888888999999999999999999763 346699999987633211     1110 010110      12358


Q ss_pred             EEeeeeecCCceEEEEEECCCCceeeeeEEEEEeCCCCcCCCceeecccee-eecCCeEEEEEEEecCCCCeEEEEECCE
Q psy16863        611 EINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAV-MTDDGLVSFECKVVGFPTPTLQWFKDNE  689 (1075)
Q Consensus       611 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~-~~~g~~~~l~C~v~g~p~p~v~W~k~g~  689 (1075)
                      .+.++...|+|.|.|+++|..|..-...+.+.|...     |.|...+.+. +..|..+.|.|.++|.|.|.+.|.|+|.
T Consensus       577 ~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~-----PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdgg  651 (873)
T KOG4194|consen  577 HLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQA-----PSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGG  651 (873)
T ss_pred             eeeeeecccCceEEEEEecccCcchhheeEEEeecc-----CccccCcccceeecccceeeeeeccCCCCcceeehhcCC
Confidence            999999999999999999999998766677888765     5555544443 5678899999999999999999999876


Q ss_pred             E-c-----------CCCCeEEEee--cCCCceEEEEEEecCceEEEEEEEEEEeccccCchhhhhhhccCCCCCeEEecc
Q psy16863        690 E-L-----------KPGDVYQLTG--TSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL  755 (1075)
Q Consensus       690 ~-l-----------~~~~~~~~~~--~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~  755 (1075)
                      . .           +.++.|-++.  .+|.|.|+|+|.|.+|..+.+++|+|.+                  .|.|..++
T Consensus       652 tdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e------------------~p~f~~PL  713 (873)
T KOG4194|consen  652 TDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLE------------------TPSFSIPL  713 (873)
T ss_pred             CCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEec------------------CCcccccc
Confidence            5 2           2344555553  4799999999999999999999999984                  78899999


Q ss_pred             ceeeeecCCeEEEEEEEecCCC-CeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEE
Q psy16863        756 KSCQATVNEEFKFTVQVSISPE-PKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITS  834 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g~p~-p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s  834 (1075)
                      .+..+..|+++.|+|.+.|.|. |.+.|+|++++|.-..+....   ++...|++.+...+|+|+|+|+..|..|.....
T Consensus       714 ~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~---d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~  790 (873)
T KOG4194|consen  714 EDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFP---DGDQLLVVKENLVEDAGIYTCEMSNTLGTERIH  790 (873)
T ss_pred             cceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCC---CCCeEEEEEehhhhhcceEEEEEEeeccceeeE
Confidence            9999999999999999999987 999999999999766654442   345589999999999999999999999987776


Q ss_pred             EEEEEEe
Q psy16863        835 CFLKLNV  841 (1075)
Q Consensus       835 ~~l~V~~  841 (1075)
                      ..+.+..
T Consensus       791 i~l~~~~  797 (873)
T KOG4194|consen  791 ICLLVYQ  797 (873)
T ss_pred             EEEEEee
Confidence            6665543

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.95  E-value=1.4e-26  Score=250.11  Aligned_cols=236  Identities=17%  Similarity=0.244  Sum_probs=168.6

Q ss_pred             eecCCeEEEEEEE-----ecCCCCeEEEEECCEEc------CCCCeEEEe--ecCCCceEEEEEEecCceEEEEEEEEEE
Q psy16863        662 MTDDGLVSFECKV-----VGFPTPTLQWFKDNEEL------KPGDVYQLT--GTSSLGSYCCVAKNVMGKAESSTQLTIE  728 (1075)
Q Consensus       662 ~~~g~~~~l~C~v-----~g~p~p~v~W~k~g~~l------~~~~~~~~~--~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  728 (1075)
                      ..+|+.+.|.|.+     .|.|.++++|+|+|...      ..+..+.+.  ..+|+|.|+|.|.|..|....++.|.|.
T Consensus        38 ~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~  117 (326)
T PHA02785         38 ELENEPVILPCPQINTLSSGYNILDILWEKRGADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLNLTIV  117 (326)
T ss_pred             hhcCCCEEEECCCccccccCCCCceEEEEECCCccceEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEEEEEE
Confidence            3468899999997     68899999999987531      123333332  3479999999999999988888888887


Q ss_pred             eccccCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEE-----EecCCCCeEEEEECCEEeecCCcEEEEEeeCc
Q psy16863        729 DIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQ-----VSISPEPKVSWFRDDQQVVESDNVKILKETLG  803 (1075)
Q Consensus       729 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~-----v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~  803 (1075)
                      ..                .+|.|...+....+.+|..+.|.|.     ..+.|+|.++|+|++. + .+.++...  .  
T Consensus       118 ~~----------------~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~--~--  175 (326)
T PHA02785        118 SV----------------SESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQR--T--  175 (326)
T ss_pred             ec----------------CCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEec--C--
Confidence            52                1222322233345778999999997     3467999999998753 3 33444332  1  


Q ss_pred             EEEEEEccccCCCCeEEEEEEEeCCceEEEEE--EEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCC---ee
Q psy16863        804 VCHLKIHALEVADQAEWKCIATNDFGQSITSC--FLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQP---TL  878 (1075)
Q Consensus       804 ~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~--~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p---~v  878 (1075)
                      ...|.|.+++.+|+|.|+|.|.|.+|....+.  .+.+.+.....+|.+..+....+..|+.++|.|.+.|.|.+   .|
T Consensus       176 ~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v  255 (326)
T PHA02785        176 PGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADV  255 (326)
T ss_pred             CCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceE
Confidence            23799999999999999999999998765432  22333322334454433333346679999999999999874   79


Q ss_pred             EEEECCEEcCCCC----------------------eeEEEECCCCceeeEEEEEEEEeCCeeE
Q psy16863        879 KWFKDGRELKAGD----------------------IHKIISGEDGTCCLGIYTCEAHNCMGTT  919 (1075)
Q Consensus       879 ~W~k~g~~l~~~~----------------------~~~i~~~~~~~~d~G~Y~C~a~N~~G~~  919 (1075)
                      .|+|||..|...+                      ...|.+......|+|.|+|.|.|..|..
T Consensus       256 ~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~  318 (326)
T PHA02785        256 FWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS  318 (326)
T ss_pred             EEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence            9999999885421                      1245666777789999999999988544

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.93  E-value=2.7e-24  Score=232.23  Aligned_cols=250  Identities=16%  Similarity=0.257  Sum_probs=177.6

Q ss_pred             eeeccCCeEEEEEEE-----ecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceee
Q psy16863        359 IAVKVGTRARLLVEI-----RSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHC  433 (1075)
Q Consensus       359 ~~v~~G~~v~l~C~~-----~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~  433 (1075)
                      ..+.+|+++.|.|.+     .|.|.++++|+|+|....   +.....+|.  .|.|.++..+|+|.|+|.|.|..|....
T Consensus        36 ~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~~~~~~~g~--~l~i~~~~~~DsG~Y~C~a~N~~g~~~~  110 (326)
T PHA02785         36 FMELENEPVILPCPQINTLSSGYNILDILWEKRGADND---RIIPIDNGS--NMLILNPTQSDSGIYICITKNETYCDMM  110 (326)
T ss_pred             hhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc---eEEEccCCc--eEEEcccCcccCeEEEEEEECCCcceEE
Confidence            355689999999997     688889999999985322   222223333  3668999999999999999999998888


Q ss_pred             EEEEEeecCCCCCCCeee-eecceEEecCCeEEEEEE-----EECCCCCeEEEEeCCEeccCCC-----EEEEEeCCCCC
Q psy16863        434 SCELSVLVPKAYKAPFFT-KELEAILTEQGTVSLECK-----VMGIPTPQLIWYKDNKKIKAGD-----IFALTANPKDP  502 (1075)
Q Consensus       434 s~~l~V~~~~~~~~p~~~-~~~~~~~~~g~~v~l~C~-----~~g~p~~~v~W~~~g~~l~~~~-----~~~l~i~~~~~  502 (1075)
                      ++.|+|.....   +.+. ......+.+|..+.|.|.     ..+.|++.++|+++.. +....     ...|.|.++..
T Consensus       111 s~~L~V~~~~~---~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~~~r~~~~~~~~L~i~~v~~  186 (326)
T PHA02785        111 SLNLTIVSVSE---SNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LRNKRLKQRTPGIITIEDVRK  186 (326)
T ss_pred             EEEEEEEecCC---CccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cCCcceEecCCCeEEEeecCh
Confidence            88888875432   1111 111233668999999997     3467889999998653 32211     23688999999


Q ss_pred             CCcEEEEEEEEecceeeEEEE----EEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEecCC
Q psy16863        503 SSLGTYTCEAVNCMGAAFSTS----RVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPP  578 (1075)
Q Consensus       503 ~d~G~Y~C~a~n~~g~~~~~~----~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p  578 (1075)
                      +|+|.|+|.|.|..|......    .+.|..                 ...||.+ ..+....+..|+.++|.|.+.+.|
T Consensus       187 ~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~-----------------~~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~P  248 (326)
T PHA02785        187 NDAGYYTCVLKYIYGDKTYNVTRIVKLEVRD-----------------RIIPPTM-QLPEGVVTSIGSNLTIACRVSLRP  248 (326)
T ss_pred             hhCeEEEEEEEeccCCEEEeEEEEEEEEEec-----------------cCCCcee-cCCCcEEecCCCcEEEEEEEECCC
Confidence            999999999999988765433    333321                 1123433 334667788899999999999887


Q ss_pred             CC--ceEEEEeCCeEEecCC-----cEEEEEcC-------CceEEEEEeeeeecCCceEEEEEECCCCcee
Q psy16863        579 WP--RSIYWYNKEGVVEASD-----KYHIMADG-------LGGYSIEINYLEAVDDGEWKCVATSSSGVKQ  635 (1075)
Q Consensus       579 ~p--~~v~W~~~~~~i~~~~-----~~~~~~~~-------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  635 (1075)
                      .+  ..+.|+++|..+...+     ++......       .....|+|.+++.+|+|.|+|.|.|..|...
T Consensus       249 ~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~  319 (326)
T PHA02785        249 PTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK  319 (326)
T ss_pred             CCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence            64  3799999998775321     22221110       0124799999999999999999999886543

>KOG3515|consensus

Probab=99.93  E-value=2.8e-24  Score=241.15  Aligned_cols=605  Identities=19%  Similarity=0.196  Sum_probs=359.5

Q ss_pred             eeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCccccCCCeEEEeeCCeEEEEEcccCCCCCEEEEEEEEeCCe
Q psy16863        253 AVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG  332 (1075)
Q Consensus       253 ~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g  332 (1075)
                      .+.+|+.+.|.|.+.+.         .+.+.+.|++.+....  .++.....   .+|.......+.-+.|.|+|.|..+
T Consensus        18 ~~~~g~~v~l~C~v~~~---------pp~~~~eW~h~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~c~a~ns~~   83 (741)
T KOG3515|consen   18 GLRLGEDVPLPCRVNSN---------PPEIDVEWYHSTSGEH--GRYATIAD---PTLVTTGDVRDTVAELNCRAFNSVG   83 (741)
T ss_pred             hhccCCcceeeeecCCC---------CCCcceEEEecCcccc--cccccccC---Cceeeecchhhhhhhhhhhhccccc
Confidence            78899999999888764         3566788887765444  33333322   2688888888889999999999755


Q ss_pred             e-EEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEE--ecCCCcEEEEEECCEecCCCC--cEEEE---EcC--
Q psy16863        333 Y-STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEI--RSPTEIKIHWYRNDRKLEENK--IYRTQ---HDG--  402 (1075)
Q Consensus       333 ~-~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~--~g~p~~~v~W~k~g~~l~~~~--~~~~~---~~g--  402 (1075)
                      . ......+.|..    +|.-...........+..+.+.|.+  .+.|.++++|..++.......  +....   ..+  
T Consensus        84 ~~~~~~~~l~v~~----~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~  159 (741)
T KOG3515|consen   84 MPSRCPMILDVDY----PPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSY  159 (741)
T ss_pred             Cceecceeecccc----CccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCcee
Confidence            4 44555566654    5555555555666788899999965  457788999999986543221  11110   111  


Q ss_pred             -CEEEEEEcccCCCCceeEEEEEEeCC---CceeeEEEEEeecCCCCCCCeeeeecc-eEEecCCeEEEEEEEE-CCCCC
Q psy16863        403 -NFYFIDLSSVSLFDSGRWTCLAENAV---GRSHCSCELSVLVPKAYKAPFFTKELE-AILTEQGTVSLECKVM-GIPTP  476 (1075)
Q Consensus       403 -~~~~L~I~~v~~~d~G~Y~C~a~n~~---g~~~~s~~l~V~~~~~~~~p~~~~~~~-~~~~~g~~v~l~C~~~-g~p~~  476 (1075)
                       ....|.+.....++.|.|+|.|.|..   +.....  +.+.+.............. ..+.+|+.+.|.|.+. |+|.+
T Consensus       160 t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~--~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~  237 (741)
T KOG3515|consen  160 TEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQ--LTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQ  237 (741)
T ss_pred             ccccceeeEEEEecCCceeEcccccccCccccccce--eEeecccccccceecchhhcCcccccceEEEEehhhcCCcch
Confidence             12357777788999999999999843   333323  3344333333323322222 3478999999999765 68999


Q ss_pred             eEEEEeCCEeccCCC-----------EEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCcCCCC
Q psy16863        477 QLIWYKDNKKIKAGD-----------IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLM  545 (1075)
Q Consensus       477 ~v~W~~~g~~l~~~~-----------~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~  545 (1075)
                      .++|+++......+.           ...+....-...+.-...|.+.| .+.  .+..+.+..                
T Consensus       238 ~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~~--~~~~tav~~----------------  298 (741)
T KOG3515|consen  238 QQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-LLA--ASQITAVQV----------------  298 (741)
T ss_pred             hhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC-ccc--cceeeeccc----------------
Confidence            999999988775431           11222222233334456799998 111  112222221                


Q ss_pred             CCCCCCeeeeeccceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEecCCcEEE-EE--cCCceEEEEEeeeeecCCce
Q psy16863        546 PPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHI-MA--DGLGGYSIEINYLEAVDDGE  622 (1075)
Q Consensus       546 ~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~-~~--~~~~~~~L~i~~~~~~d~G~  622 (1075)
                         ++...........+..|++..+.|...+..++..+.|+++......+....- ..  -+.....+........|.|.
T Consensus       299 ---~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~  375 (741)
T KOG3515|consen  299 ---KPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQ  375 (741)
T ss_pred             ---ccccccccCcccccccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCce
Confidence               1111111223334778999999998877666679999996554432221110 00  01122345666778889999


Q ss_pred             EEEEEECCCCceeeee-EEEEEeCCCCcCCCceeecc-cee-eecCCeEEEEEEEecCC-CCeEEEEECCEEcCCCCe--
Q psy16863        623 WKCVATSSSGVKQFSA-AYVHVLMPKNYRKPRFVESL-KAV-MTDDGLVSFECKVVGFP-TPTLQWFKDNEELKPGDV--  696 (1075)
Q Consensus       623 Y~C~a~n~~g~~~~~~-~~l~v~~p~~~~~p~~~~~~-~~~-~~~g~~~~l~C~v~g~p-~p~v~W~k~g~~l~~~~~--  696 (1075)
                      |+|.|.|.......++ ..+.+..     +|.|+..- ..+ ..+.+.....-.+.+.| .+.+.|.+++-++.+-..  
T Consensus       376 v~c~a~~~~~~~~sss~~~l~~l~-----~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~  450 (741)
T KOG3515|consen  376 VTCPADNLELAHSSSSSFLLPVLP-----SPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGV  450 (741)
T ss_pred             EEccccccccccccccceeccccC-----CchhhhhcccceeeccCccccccCcccCCCcccchhheecceecccccCce
Confidence            9999998874433222 2222222     23333221 112 22333333333333554 468999998877764322  


Q ss_pred             EEE-----------eecCCCceEEEEEEecCceEEEEEEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCe
Q psy16863        697 YQL-----------TGTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEE  765 (1075)
Q Consensus       697 ~~~-----------~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~  765 (1075)
                      +.+           ....|.|.|.|+|.|..|.+.....+.+..                  .|.....-.......|.+
T Consensus       451 ~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~------------------sp~~~~~~~~~~~~~~ns  512 (741)
T KOG3515|consen  451 VRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHT------------------SPHNHHLQDQVEGATGNS  512 (741)
T ss_pred             EEeeccccccccceeeeccCCcceeeeccCCCceeeEEeecccc------------------CCcccccccccccCCCCc
Confidence            221           134689999999999999998877766663                  333332222344556777


Q ss_pred             EEEEEEEecCCC--CeEEEEECCEEeecCCcEEE-EEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEec
Q psy16863        766 FKFTVQVSISPE--PKVSWFRDDQQVVESDNVKI-LKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP  842 (1075)
Q Consensus       766 ~~l~C~v~g~p~--p~v~W~k~g~~i~~~~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~  842 (1075)
                      +.+.|.....|.  -.+.|.|.|.+......-.. .........|.+......-+|+|.|.+.|..-.+...-.+.+..+
T Consensus       513 ~~~~~~q~~~~~~~~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~~s~  592 (741)
T KOG3515|consen  513 VDGECMQDEQPQDQQMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKAYSA  592 (741)
T ss_pred             ccceeeccccccchhhhcccccCCCCcccccccccccccCCccceeecccccccccceEEeecCCCCccccceEEEeccc
Confidence            999999988773  36899998876532110000 000112346777777777889999999992222333344444322


Q ss_pred             CCCCCCeeeeecceeecCCC-eEEEEEEEEccCCCeeEEEECCEEcCCCCeeEEEECCCCcee-------------eEEE
Q psy16863        843 KHYKKPKFLEELKAVLSEGG-AVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC-------------LGIY  908 (1075)
Q Consensus       843 ~~~~~p~~~~~~~~~~~~g~-~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~~~i~~~~~~~~d-------------~G~Y  908 (1075)
                      +....+   .++.....+|. .++..|.+.|.|.+.++|-|++.....+......-...+..+             -+..
T Consensus       593 ~~v~~~---tp~~~~~~~g~v~as~~~~a~~~~~~~~~~~k~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~y~~  669 (741)
T KOG3515|consen  593 LIVTVR---TPNMYTAQEGCVNASDDCVASGVPSTSFTTAKTPLQTTEGPHIREKATQQGQTHSSSEWILNHIDGSDYEN  669 (741)
T ss_pred             cccccc---CCceeeeccCcccccccceecccccceeecccCCCcccCCceEEEeeeeccccccccccccCCcchhhhcc
Confidence            211110   11111122332 789999999999999999999887655544332111111111             1237


Q ss_pred             EEEEEeCCeeEEEEEEE
Q psy16863        909 TCEAHNCMGTTSSSAAL  925 (1075)
Q Consensus       909 ~C~a~N~~G~~~~~~~l  925 (1075)
                      .|.+.|.+|+.-.+..+
T Consensus       670 ~c~t~n~lg~~~v~~~~  686 (741)
T KOG3515|consen  670 GCTTQNLLGSDHVSGAI  686 (741)
T ss_pred             eeeecccCCCcccccee
Confidence            99999999988665544

>KOG3515|consensus

Probab=99.92  E-value=1.3e-23  Score=235.89  Aligned_cols=616  Identities=17%  Similarity=0.148  Sum_probs=360.7

Q ss_pred             cceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCCCceeccCcEEEEecCCeEEEEEceeccCCCeEEEEEEE
Q psy16863        142 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTAS  221 (1075)
Q Consensus       142 ~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~  221 (1075)
                      +.. .+..|+.+.|.|.+.+         ++|.+.+.|++.+....  +++..+.+.   .|...+...+.-++|.|+|.
T Consensus        15 l~~-~~~~g~~v~l~C~v~~---------~pp~~~~eW~h~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~c~a~   79 (741)
T KOG3515|consen   15 LTV-GLRLGEDVPLPCRVNS---------NPPEIDVEWYHSTSGEH--GRYATIADP---TLVTTGDVRDTVAELNCRAF   79 (741)
T ss_pred             CCh-hhccCCcceeeeecCC---------CCCCcceEEEecCcccc--cccccccCC---ceeeecchhhhhhhhhhhhc
Confidence            444 8889999999998876         34678899999875444  444433332   67788888888899999999


Q ss_pred             cCceeEE-EEEEEeeeccCCCCCccccccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCccccCC--C
Q psy16863        222 NESGYST-AKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGN--R  298 (1075)
Q Consensus       222 n~~g~~~-~~~~l~V~~~~~~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~~~~~--~  298 (1075)
                      |..+... ....+.|.    .+|.-...+.......+..+.+.|.+..+.        .+...+.|+++........  .
T Consensus        80 ns~~~~~~~~~~l~v~----~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~--------~P~~nlrW~~n~r~e~~~~~~~  147 (741)
T KOG3515|consen   80 NSVGMPSRCPMILDVD----YPPACLPELGEIFQVDKGVVQIICSAKVAG--------RPNPNLRWGFNNRAELNAVNQR  147 (741)
T ss_pred             ccccCceecceeeccc----cCccccccccchhhhcCCeEEEEEeecCCC--------CCCcceeeeeccEEeecccCCc
Confidence            9855442 33334443    445444445555566777788877655432        3556677777665444311  1


Q ss_pred             eEEE---ee---CCeEEEEEcccCCCCCEEEEEEEEeC---CeeEEEEEEEEEecCCCCCCeeee-ecCceeeccCCeEE
Q psy16863        299 FRAI---NR---DGRTELNIRRVRRDDGGRYSVTASNE---SGYSTAKFELSVESQVPDAPAFIR-RLHDIAVKVGTRAR  368 (1075)
Q Consensus       299 ~~~~---~~---~~~~~L~I~~~~~~d~G~Y~C~a~n~---~g~~~~~~~l~V~~~~~~~p~~~~-~~~~~~v~~G~~v~  368 (1075)
                      ..+.   ..   .....|++...+.++.|.|+|.|.|.   .+.......+.|..  +.....+. ...-..+.+|+.+.
T Consensus       148 ~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~--~~~~~~~~~~~~~qsF~~g~~in  225 (741)
T KOG3515|consen  148 GRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEA--PCKGIGITGAQEQQSFTEGQTIN  225 (741)
T ss_pred             ccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeeccc--ccccceecchhhcCcccccceEE
Confidence            1111   00   11336888888999999999999994   33333333333332  22222222 22336789999999


Q ss_pred             EEEEE-ecCCCcEEEEEECCEecCCCCcEEEEEcCCE--EEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeecCCCC
Q psy16863        369 LLVEI-RSPTEIKIHWYRNDRKLEENKIYRTQHDGNF--YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAY  445 (1075)
Q Consensus       369 l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~--~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~  445 (1075)
                      |.|.+ .|+|.+.++||++...+..+.......++..  +.+.+..-..++.-...|.+.|   ....+..+.+..++.-
T Consensus       226 lvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n---~~~~~~~tav~~~~~~  302 (741)
T KOG3515|consen  226 LVCNAQGGNPSQQQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN---LLAASQITAVQVKPTA  302 (741)
T ss_pred             EEehhhcCCcchhhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC---ccccceeeeccccccc
Confidence            99986 5688999999999987755422212222221  2333332233334467799998   1222333444444321


Q ss_pred             CCCeeeeecceEEecCCeEEEEEEEE-CCCCCeEEEEeCCEeccCCC-------------EEEEEeCCCCCCCcEEEEEE
Q psy16863        446 KAPFFTKELEAILTEQGTVSLECKVM-GIPTPQLIWYKDNKKIKAGD-------------IFALTANPKDPSSLGTYTCE  511 (1075)
Q Consensus       446 ~~p~~~~~~~~~~~~g~~v~l~C~~~-g~p~~~v~W~~~g~~l~~~~-------------~~~l~i~~~~~~d~G~Y~C~  511 (1075)
                      .  .+... ...+..|....+.|... ++|...+.|+|+.+......             ...+........|.|.|+|.
T Consensus       303 ~--~Ist~-~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~  379 (741)
T KOG3515|consen  303 V--PISTS-DSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCP  379 (741)
T ss_pred             c--cccCc-ccccccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEcc
Confidence            1  11111 11266788889988854 67888999999766653221             12344556678889999999


Q ss_pred             EEecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEecCCCCceEEEEeCCeE
Q psy16863        512 AVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV  591 (1075)
Q Consensus       512 a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~  591 (1075)
                      |.|.......+....+.                 +-..|..+......+...+++.....-.+.+.|...++.|.+.+-+
T Consensus       380 a~~~~~~~~sss~~~l~-----------------~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~  442 (741)
T KOG3515|consen  380 ADNLELAHSSSSSFLLP-----------------VLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYK  442 (741)
T ss_pred             ccccccccccccceecc-----------------ccCCchhhhhcccceeeccCccccccCcccCCCcccchhheeccee
Confidence            99877544444333322                 1112233333444455555655554444446776668999998877


Q ss_pred             EecCCc--EEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEEeCCCCcCCCceeeccceeeecCCeEE
Q psy16863        592 VEASDK--YHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVS  669 (1075)
Q Consensus       592 i~~~~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~  669 (1075)
                      +.....  +.+...+   ..+.+.++...|.|.|.|.|.|..|.+.... .+.+...+....    .........++++.
T Consensus       443 ~~~~~g~~~~v~~~~---~~~s~~~v~~~d~g~y~~tatns~gg~~~~~-~~~~~~sp~~~~----~~~~~~~~~~ns~~  514 (741)
T KOG3515|consen  443 LSQVDGGVVRVGAGA---GLGSGVNVSRSDGGSYGLTATNSPGGAQAYL-LLGVHTSPHNHH----LQDQVEGATGNSVD  514 (741)
T ss_pred             cccccCceEEeeccc---cccccceeeeccCCcceeeeccCCCceeeEE-eeccccCCcccc----cccccccCCCCccc
Confidence            654433  3333322   2344667999999999999999999865322 223333221111    11122334566788


Q ss_pred             EEEEEecCCC--CeEEEEECCEEcCC-------------CCeEEEeecC--CCceEEEEEEecCceEEEEEEEEEEeccc
Q psy16863        670 FECKVVGFPT--PTLQWFKDNEELKP-------------GDVYQLTGTS--SLGSYCCVAKNVMGKAESSTQLTIEDIRN  732 (1075)
Q Consensus       670 l~C~v~g~p~--p~v~W~k~g~~l~~-------------~~~~~~~~~~--d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~  732 (1075)
                      +.|.....|.  -.+.|.+.+.....             ...+...+..  -++.|.|.+.|..--+.-...|.+...+.
T Consensus       515 ~~~~q~~~~~~~~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~~s~~~  594 (741)
T KOG3515|consen  515 GECMQDEQPQDQQMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKAYSALI  594 (741)
T ss_pred             ceeeccccccchhhhcccccCCCCcccccccccccccCCccceeecccccccccceEEeecCCCCccccceEEEeccccc
Confidence            9999886654  35899998765421             1123333332  35899999988332333334444431100


Q ss_pred             cCchhhhhhhccCCCCCeEEeccceeeeecC-CeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEe---eCcEEEEE
Q psy16863        733 HLSEEDKLLLLTNNKAPKFIEGLKSCQATVN-EEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKE---TLGVCHLK  808 (1075)
Q Consensus       733 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g-~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~---~~~~~~L~  808 (1075)
                                 ....+|....      ..+| -.++..|.+.|.|.+.++|-|+......+..+.....   ..+.....
T Consensus       595 -----------v~~~tp~~~~------~~~g~v~as~~~~a~~~~~~~~~~~k~p~~~~~~~~~~~~~~~~~~~~s~~~~  657 (741)
T KOG3515|consen  595 -----------VTVRTPNMYT------AQEGCVNASDDCVASGVPSTSFTTAKTPLQTTEGPHIREKATQQGQTHSSSEW  657 (741)
T ss_pred             -----------ccccCCceee------eccCcccccccceecccccceeecccCCCcccCCceEEEeeeecccccccccc
Confidence                       0001222211      1111 1788999999999999999999887655554432211   11122333


Q ss_pred             EccccCCCCeEEEEEEEeCCceEEEE
Q psy16863        809 IHALEVADQAEWKCIATNDFGQSITS  834 (1075)
Q Consensus       809 I~~~~~~D~G~Y~C~A~N~~G~~~~s  834 (1075)
                      |-+.-..+.+...|.+.|.+|....+
T Consensus       658 ~~~~~~~~~y~~~c~t~n~lg~~~v~  683 (741)
T KOG3515|consen  658 ILNHIDGSDYENGCTTQNLLGSDHVS  683 (741)
T ss_pred             ccCCcchhhhcceeeecccCCCcccc
Confidence            43444344444999999999987544

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.79  E-value=3.4e-18  Score=172.20  Aligned_cols=154  Identities=17%  Similarity=0.217  Sum_probs=113.7

Q ss_pred             cceeeeecCCeEEEEEEEecCC-----------CCeEEEEECCEEe--ec-CCc---EEEEEe--eCcEEEEEEccccCC
Q psy16863        755 LKSCQATVNEEFKFTVQVSISP-----------EPKVSWFRDDQQV--VE-SDN---VKILKE--TLGVCHLKIHALEVA  815 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p-----------~p~v~W~k~g~~i--~~-~~~---~~~~~~--~~~~~~L~I~~~~~~  815 (1075)
                      +....+.+|+++.|.|.+.+.|           .+.+.|+|++...  .. +.+   ..+...  ......|.|.+++.+
T Consensus        29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~  108 (227)
T PHA02826         29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINI  108 (227)
T ss_pred             cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChH
Confidence            4556789999999999998754           4599999998652  11 111   000101  111247999999999


Q ss_pred             CCeEEEEEEEeCCceEEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEc-----cCCCeeEEEECCEEcCCC
Q psy16863        816 DQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIG-----VPQPTLKWFKDGRELKAG  890 (1075)
Q Consensus       816 D~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g-----~p~p~v~W~k~g~~l~~~  890 (1075)
                      |+|.|+|.|+|..|....++.|.|..+     +     ....+.+|+.+.|+|.+.+     .|.|+|+|||||++|..+
T Consensus       109 DsG~Y~C~a~N~~~~~~~~i~L~V~~~-----~-----~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~  178 (227)
T PHA02826        109 DEGIYICTISSGNICEESTIRLTFDSG-----T-----INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYT  178 (227)
T ss_pred             HCEEEEEEEEECCcceEEEEEEEEecC-----C-----ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCC
Confidence            999999999999998888887777422     1     1123568999999999863     467999999999999755


Q ss_pred             Ce-------eEEEECCCCceeeEEEEEEEEeCCee
Q psy16863        891 DI-------HKIISGEDGTCCLGIYTCEAHNCMGT  918 (1075)
Q Consensus       891 ~~-------~~i~~~~~~~~d~G~Y~C~a~N~~G~  918 (1075)
                      ++       ..|.+......|+|.|+|.|+...+.
T Consensus       179 ~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~~g  213 (227)
T PHA02826        179 DRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNKNS  213 (227)
T ss_pred             CCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeECC
Confidence            43       34677788889999999999987543

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.71  E-value=1.8e-16  Score=137.89  Aligned_cols=94  Identities=15%  Similarity=0.214  Sum_probs=85.2

Q ss_pred             CeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCC
Q psy16863        749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDF  828 (1075)
Q Consensus       749 p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~  828 (1075)
                      |.|+..++++.+..|+.+.|.|.+.|.|+|.+.|+|||++|..+.++.+.... ..+.|.|.++..+|+|.|+|.|.|.+
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~-~~s~L~I~~~~~~D~G~Ytc~a~N~~   79 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTE-NSSKLTITEGQQEHCGCYTLEVENKL   79 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecC-CeeEEEECCCChhhCEEEEEEEEcCC
Confidence            57788888999999999999999999999999999999999888887776543 35789999999999999999999999


Q ss_pred             ceEEEEEEEEEEecC
Q psy16863        829 GQSITSCFLKLNVPK  843 (1075)
Q Consensus       829 G~~~~s~~l~V~~~~  843 (1075)
                      |.+.+++.|.|..+|
T Consensus        80 G~~~~~~~l~V~~~P   94 (98)
T cd05762          80 GSRQAQVNLTVVDKP   94 (98)
T ss_pred             CceeEEEEEEEecCC
Confidence            999999999998765

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.70  E-value=7e-16  Score=155.47  Aligned_cols=167  Identities=17%  Similarity=0.208  Sum_probs=115.4

Q ss_pred             cccceeeccceeEEEEEecCCCc--eEEEEecCCCeeeEEecCCCcccc---CCCe-----EEEe-eCCeEEEEEcccCC
Q psy16863        249 LHDIAVKVGTRARLLVEIRSPTE--IKCQFDLNNTIPFSFRAQGDHPIF---GNRF-----RAIN-RDGRTELNIRRVRR  317 (1075)
Q Consensus       249 ~~~~~v~~g~~~~l~c~~~~~~~--~~c~~~~~~~~~~~w~~~~~~~~~---~~~~-----~~~~-~~~~~~L~I~~~~~  317 (1075)
                      +....+.+|+++.|.|.+...+.  +. .........+.|.+.+.....   +.+.     .... ......|.|.+++.
T Consensus        29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~-~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~  107 (227)
T PHA02826         29 LTPVYAKFGDPMVLLCTGKHYKKSIFF-DKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVIN  107 (227)
T ss_pred             cceEEecCCCCEEEEcccccccccccc-ccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCCh
Confidence            34567889999999998743110  00 000012345667665532111   1110     0000 11234899999999


Q ss_pred             CCCEEEEEEEEeCCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEec-----CCCcEEEEEECCEecCC
Q psy16863        318 DDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS-----PTEIKIHWYRNDRKLEE  392 (1075)
Q Consensus       318 ~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g-----~p~~~v~W~k~g~~l~~  392 (1075)
                      +|+|.|+|.|.|..+.....+.|.|..    ++      .+..+.+|+.+.|.|.+.+     .|.|+|+|||||.+|..
T Consensus       108 ~DsG~Y~C~a~N~~~~~~~~i~L~V~~----~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~  177 (227)
T PHA02826        108 IDEGIYICTISSGNICEESTIRLTFDS----GT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLY  177 (227)
T ss_pred             HHCEEEEEEEEECCcceEEEEEEEEec----CC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCC
Confidence            999999999999888877788888752    11      2456788999999999853     35789999999999987


Q ss_pred             CCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCC
Q psy16863        393 NKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAV  428 (1075)
Q Consensus       393 ~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~  428 (1075)
                      +.++.+..++.  .|.|.+++.+|+|.|+|.|+...
T Consensus       178 ~~r~~~~~~~~--~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        178 TDRIQLRNNNS--TLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             CCCEEEeCCCC--EEEECcCCHHhCEEEEEEEEEeE
Confidence            77766554443  59999999999999999999754

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.67  E-value=1.1e-15  Score=133.02  Aligned_cols=95  Identities=18%  Similarity=0.329  Sum_probs=87.9

Q ss_pred             CeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCC
Q psy16863        350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG  429 (1075)
Q Consensus       350 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g  429 (1075)
                      |.|+..+.+..+.+|+.+.|.|.+.|.|++.+.|+|||.+|..+.++.+...+..+.|.|.++..+|+|.|+|.|+|..|
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G   80 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG   80 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence            56788889999999999999999999999999999999999888888888777778999999999999999999999999


Q ss_pred             ceeeEEEEEeecCCC
Q psy16863        430 RSHCSCELSVLVPKA  444 (1075)
Q Consensus       430 ~~~~s~~l~V~~~~~  444 (1075)
                      ...+++.|.|...|.
T Consensus        81 ~~~~~~~l~V~~~P~   95 (98)
T cd05762          81 SRQAQVNLTVVDKPD   95 (98)
T ss_pred             ceeEEEEEEEecCCC
Confidence            999999999987763

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.65  E-value=8e-16  Score=125.56  Aligned_cols=74  Identities=24%  Similarity=0.421  Sum_probs=65.5

Q ss_pred             EEEEEEEecCCCCeEEEEECCEEeec-CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863        766 FKFTVQVSISPEPKVSWFRDDQQVVE-SDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL  839 (1075)
Q Consensus       766 ~~l~C~v~g~p~p~v~W~k~g~~i~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V  839 (1075)
                      +.|+|.+.|.|.|.|+|+|+|++|.. +.++.+...+.+.+.|.|.+++.+|+|.|+|.|.|.+|.+.+++.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            47999999999999999999999974 467777665556678999999999999999999999999999988875

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.63  E-value=1.4e-15  Score=129.73  Aligned_cols=88  Identities=15%  Similarity=0.235  Sum_probs=76.9

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeC
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND  827 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~  827 (1075)
                      ||.|...+.+..+.+|+.+.|.|.+.|.|.|.++|+|++.++....++..   .  ...|.|.+++.+|+|.|+|.|.|.
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~---~--~~~L~I~~v~~~D~G~Y~C~A~N~   75 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM---S--GAVLKIFNIQPEDEGTYECEAENI   75 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec---C--CCEEEECcCChhhCEEEEEEEEcC
Confidence            57888899999999999999999999999999999999998866544332   1  237999999999999999999999


Q ss_pred             CceEEEEEEEEEE
Q psy16863        828 FGQSITSCFLKLN  840 (1075)
Q Consensus       828 ~G~~~~s~~l~V~  840 (1075)
                      +|.+..++.|.|+
T Consensus        76 ~G~~~~~~~l~V~   88 (88)
T cd05851          76 KGKDKHQARVYVQ   88 (88)
T ss_pred             CCceEEEEEEEEC
Confidence            9999999888773

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.61  E-value=3.5e-15  Score=122.12  Aligned_cols=74  Identities=20%  Similarity=0.380  Sum_probs=64.2

Q ss_pred             EEEEEEEecCCCCeEEEEECCEEeec-CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863        766 FKFTVQVSISPEPKVSWFRDDQQVVE-SDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL  839 (1075)
Q Consensus       766 ~~l~C~v~g~p~p~v~W~k~g~~i~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V  839 (1075)
                      +.|+|.+.|.|.|.|+|+|++.++.. ..++.+.....+...|.|.+++.+|+|.|+|.|.|.+|++++++.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            47999999999999999999999975 356666554445568999999999999999999999999999988875

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.60  E-value=1.2e-14  Score=125.99  Aligned_cols=90  Identities=24%  Similarity=0.494  Sum_probs=83.4

Q ss_pred             CeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCC
Q psy16863        749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDF  828 (1075)
Q Consensus       749 p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~  828 (1075)
                      |.|...+.+..+.+|+++.|.|.+.|.|.|.+.|+++|.++..+.++.+.... +.+.|.|.+++.+|+|.|+|.|.|..
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~~~n~~   79 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDG-GSSSLTIKNVTREDAGTYTCVASNSS   79 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEET-TEEEEEESSESGGGSEEEEEEEEETT
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeeccc-ceeEEccCCCChhhCEEEEEEEEECC
Confidence            67888889999999999999999999999999999999999999999887655 68899999999999999999999999


Q ss_pred             ceEEEEEEEEE
Q psy16863        829 GQSITSCFLKL  839 (1075)
Q Consensus       829 G~~~~s~~l~V  839 (1075)
                      |..+.++.|.|
T Consensus        80 g~~~~~~~l~V   90 (90)
T PF07679_consen   80 GEATASVNLTV   90 (90)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CEEEEEEEEEC
Confidence            99988888875

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.60  E-value=8.1e-15  Score=126.74  Aligned_cols=83  Identities=20%  Similarity=0.388  Sum_probs=73.0

Q ss_pred             eeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEE
Q psy16863        757 SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCF  836 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~  836 (1075)
                      .+.+.+|++++|.|.+.|.|.|++.|+|+|.++..+.++.+.........|.|.+++.+|+|.|+|.|.|.+|.+..++.
T Consensus        10 ~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   89 (92)
T cd05737          10 VVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVT   89 (92)
T ss_pred             eEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEE
Confidence            46788999999999999999999999999999988888877655444678999999999999999999999999887776


Q ss_pred             EEE
Q psy16863        837 LKL  839 (1075)
Q Consensus       837 l~V  839 (1075)
                      |.|
T Consensus        90 v~v   92 (92)
T cd05737          90 VSV   92 (92)
T ss_pred             EeC
Confidence            654

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.59  E-value=1.2e-14  Score=125.78  Aligned_cols=90  Identities=20%  Similarity=0.369  Sum_probs=80.1

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .||.|+..+++..+..|+.+.|.|.+.|.|.|.+.|+|+|..+..+.++.+... ...+.|.|.+++.+|+|.|+|.|+|
T Consensus         2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~N   80 (92)
T cd05747           2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITST-EYKSTFEISKVQMSDEGNYTVVVEN   80 (92)
T ss_pred             CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEc-CCeeEEEECCCCcccCEeEEEEEEc
Confidence            378899889999999999999999999999999999999999988778776543 3357899999999999999999999


Q ss_pred             CCceEEEEEEE
Q psy16863        827 DFGQSITSCFL  837 (1075)
Q Consensus       827 ~~G~~~~s~~l  837 (1075)
                      .+|.+..++.|
T Consensus        81 ~~G~~~~~~~l   91 (92)
T cd05747          81 SEGKQEAQFTL   91 (92)
T ss_pred             CCCCEeEEEEe
Confidence            99998777665

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.59  E-value=1.8e-14  Score=122.06  Aligned_cols=82  Identities=23%  Similarity=0.435  Sum_probs=70.5

Q ss_pred             eeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecC-CcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEE
Q psy16863        757 SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVES-DNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSC  835 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~  835 (1075)
                      .+.+..|+.+.|.|.+.|.|.|.++|+|+|+++..+ .++.+.... ..+.|.|.++..+|+|.|+|.|.|.+|.+..++
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~-~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~   82 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYK-DLSSFVIEGAEREDEGVYTITVTNPVGEDHASL   82 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcC-CeEEEEECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence            356889999999999999999999999999999764 466665433 357899999999999999999999999998887


Q ss_pred             EEEE
Q psy16863        836 FLKL  839 (1075)
Q Consensus       836 ~l~V  839 (1075)
                      .|.|
T Consensus        83 ~l~V   86 (86)
T cd05894          83 FVKV   86 (86)
T ss_pred             EEEC
Confidence            7764

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.59  E-value=1.3e-14  Score=126.17  Aligned_cols=86  Identities=20%  Similarity=0.332  Sum_probs=72.2

Q ss_pred             ceeeeecCCeEEEEEEEec-CCCCeEEEEECCEEeecCCcEEEEEee----CcEEEEEEccccCCCCeEEEEEEEeCCce
Q psy16863        756 KSCQATVNEEFKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKET----LGVCHLKIHALEVADQAEWKCIATNDFGQ  830 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g-~p~p~v~W~k~g~~i~~~~~~~~~~~~----~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~  830 (1075)
                      ....+.+|+++.|+|.+.| .|+|.+.|+|||.+|.......+...+    .....|.|.++..+|+|.|+|.|+|..|.
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~   90 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence            3567889999999999999 899999999999999866554443321    12468999999999999999999999999


Q ss_pred             EEEEEEEEEEe
Q psy16863        831 SITSCFLKLNV  841 (1075)
Q Consensus       831 ~~~s~~l~V~~  841 (1075)
                      +..++.|.|.+
T Consensus        91 ~~~t~~L~V~v  101 (101)
T cd04975          91 KSLTFELYVNV  101 (101)
T ss_pred             EEEEEEEEEEC
Confidence            99888888863

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.57  E-value=1.5e-14  Score=119.08  Aligned_cols=74  Identities=19%  Similarity=0.372  Sum_probs=64.4

Q ss_pred             EEEEEEEecCCCCeEEEEECCEEeec-CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863        766 FKFTVQVSISPEPKVSWFRDDQQVVE-SDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL  839 (1075)
Q Consensus       766 ~~l~C~v~g~p~p~v~W~k~g~~i~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V  839 (1075)
                      ++|+|.+.|.|.|.|+|+|+|..+.. ..++.+.....+..+|.|.+++.+|+|.|+|.|.|.+|.+.+++.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            47999999999999999999999974 456666555556678999999999999999999999999999888765

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.57  E-value=8.6e-15  Score=119.20  Aligned_cols=73  Identities=22%  Similarity=0.464  Sum_probs=65.5

Q ss_pred             CCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863        763 NEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL  839 (1075)
Q Consensus       763 g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V  839 (1075)
                      |+.+.|.|.+.|.|.|+|+|+|++.++..+.++.+..  ++  .|.|.+++.+|+|.|+|.|+|.+|.+.+++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~--~g--~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWD--DG--SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcC--CC--EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            6789999999999999999999999988888877643  22  6999999999999999999999999999988865

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.57  E-value=2.3e-14  Score=123.48  Aligned_cols=85  Identities=20%  Similarity=0.381  Sum_probs=69.9

Q ss_pred             cceeeeecCCeEEEEEEEecCCC-CeEEEEE-CCEEeec-CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCC-ce
Q psy16863        755 LKSCQATVNEEFKFTVQVSISPE-PKVSWFR-DDQQVVE-SDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDF-GQ  830 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p~-p~v~W~k-~g~~i~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~-G~  830 (1075)
                      +.+..+..|++++|.|.+.|.|. |.++|+| +|.++.. +.++.+...+.....|.|.+++.+|+|.|+|.|+|.+ |.
T Consensus         7 p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~   86 (96)
T cd05865           7 PSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGE   86 (96)
T ss_pred             CCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCc
Confidence            34456889999999999999995 7999998 7877765 4456555444446789999999999999999999997 88


Q ss_pred             EEEEEEEEE
Q psy16863        831 SITSCFLKL  839 (1075)
Q Consensus       831 ~~~s~~l~V  839 (1075)
                      +.+++.|.|
T Consensus        87 ~~~s~~l~v   95 (96)
T cd05865          87 SEATVNVKI   95 (96)
T ss_pred             EEEEEEEEE
Confidence            888887765

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.54  E-value=1.9e-14  Score=118.63  Aligned_cols=74  Identities=22%  Similarity=0.393  Sum_probs=64.8

Q ss_pred             cCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863        762 VNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL  839 (1075)
Q Consensus       762 ~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V  839 (1075)
                      +|+.+.|.|.+.|.|.|.|+|+|+|.++....++.+..  .  ..|.|.+++.+|+|.|+|.|.|.+|....++.|.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~--~--~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLS--S--GTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEcc--C--CeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            58999999999999999999999999987766655432  2  37999999999999999999999999998888765

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.54  E-value=6.7e-14  Score=119.22  Aligned_cols=81  Identities=15%  Similarity=0.226  Sum_probs=68.9

Q ss_pred             CCeEEEEEEEecCCCCeEEEEECCEEeecC-CcEEEEEee---CcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEE
Q psy16863        763 NEEFKFTVQVSISPEPKVSWFRDDQQVVES-DNVKILKET---LGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK  838 (1075)
Q Consensus       763 g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~-~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~  838 (1075)
                      |+.++|.|.+.|.|+|.++|+|++..+..+ .++.+....   .....|.|.++..+|+|.|+|.|.|.+|....++.|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            789999999999999999999999988654 466554322   1236899999999999999999999999999999999


Q ss_pred             EEecC
Q psy16863        839 LNVPK  843 (1075)
Q Consensus       839 V~~~~  843 (1075)
                      |..+|
T Consensus        81 V~~~P   85 (88)
T cd05735          81 VQEPP   85 (88)
T ss_pred             EeCCC
Confidence            98764

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.54  E-value=9e-14  Score=120.57  Aligned_cols=90  Identities=30%  Similarity=0.592  Sum_probs=84.7

Q ss_pred             CeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCC
Q psy16863        350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG  429 (1075)
Q Consensus       350 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g  429 (1075)
                      |.|...+.++.+.+|+++.|.|.+.+.|.+.+.|+++|..+..+.++.+...+..+.|.|.++..+|+|.|+|.|.|..|
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g   80 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG   80 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence            67888899999999999999999999999999999999999999999999888999999999999999999999999999


Q ss_pred             ceeeEEEEEe
Q psy16863        430 RSHCSCELSV  439 (1075)
Q Consensus       430 ~~~~s~~l~V  439 (1075)
                      ....++.|.|
T Consensus        81 ~~~~~~~l~V   90 (90)
T PF07679_consen   81 EATASVNLTV   90 (90)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEC
Confidence            9888888765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.54  E-value=2.7e-14  Score=112.89  Aligned_cols=66  Identities=20%  Similarity=0.340  Sum_probs=57.3

Q ss_pred             EEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy16863        766 FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLN  840 (1075)
Q Consensus       766 ~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~  840 (1075)
                      ++|.|.+.|.|.|.++|||||++|....         ....|.|.++..+|+|.|+|.|+|.+|....+..+.|.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~---------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGKH---------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECcccC---------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            4799999999999999999999996321         23489999999999999999999999988888777764

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.54  E-value=3.3e-14  Score=120.66  Aligned_cols=84  Identities=20%  Similarity=0.527  Sum_probs=72.9

Q ss_pred             EEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCce
Q psy16863        751 FIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQ  830 (1075)
Q Consensus       751 ~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~  830 (1075)
                      |+..+.+..+..|+.+.|.|.+.|.|.|.+.|+|+|.++....++.+.   .+  .|.|.+++.+|+|.|+|.|.|.+|.
T Consensus         2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~---~~--~L~i~~~~~~D~G~Y~C~a~N~~G~   76 (85)
T cd05728           2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE---AG--DLRITKLSLSDSGMYQCVAENKHGT   76 (85)
T ss_pred             ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe---CC--EEEEeeCCHHHCEEEEEEEECCCCe
Confidence            445567788999999999999999999999999999999877666542   22  6999999999999999999999999


Q ss_pred             EEEEEEEEE
Q psy16863        831 SITSCFLKL  839 (1075)
Q Consensus       831 ~~~s~~l~V  839 (1075)
                      ..+++.|.|
T Consensus        77 ~~~~~~l~V   85 (85)
T cd05728          77 IYASAELAV   85 (85)
T ss_pred             EEEEEEEEC
Confidence            988888765

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.54  E-value=4.6e-14  Score=123.01  Aligned_cols=85  Identities=24%  Similarity=0.344  Sum_probs=71.0

Q ss_pred             eeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEe-----eCcEEEEEEccccCCCCeEEEEEEEeCCceE
Q psy16863        757 SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKE-----TLGVCHLKIHALEVADQAEWKCIATNDFGQS  831 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~-----~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~  831 (1075)
                      ...+..|+.+.|.|.+.|.|+|.++|+|||++|..+.+..+...     ....+.|.|.+++.+|+|.|+|.|.|..|.+
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            45688899999999999999999999999999987654433211     1123589999999999999999999999999


Q ss_pred             EEEEEEEEEe
Q psy16863        832 ITSCFLKLNV  841 (1075)
Q Consensus       832 ~~s~~l~V~~  841 (1075)
                      ..++.|.|++
T Consensus        92 ~~t~~l~V~v  101 (101)
T cd05859          92 SYTFALQIQV  101 (101)
T ss_pred             EEEEEEEEEC
Confidence            9998888863

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.53  E-value=9.6e-14  Score=120.12  Aligned_cols=90  Identities=17%  Similarity=0.329  Sum_probs=81.8

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      .||.|+..+.+..+.+|+.+.|.|.+.|.|.+.+.|+|+|..+..+.++.+...+....|.|.++..+|+|.|+|.|+|.
T Consensus         2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   81 (92)
T cd05747           2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS   81 (92)
T ss_pred             CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence            37888888999999999999999999999999999999999998888888777777788999999999999999999999


Q ss_pred             CCceeeEEEE
Q psy16863        428 VGRSHCSCEL  437 (1075)
Q Consensus       428 ~g~~~~s~~l  437 (1075)
                      .|....++.|
T Consensus        82 ~G~~~~~~~l   91 (92)
T cd05747          82 EGKQEAQFTL   91 (92)
T ss_pred             CCCEeEEEEe
Confidence            9998877665

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.53  E-value=5.6e-14  Score=114.53  Aligned_cols=71  Identities=34%  Similarity=0.608  Sum_probs=62.2

Q ss_pred             eEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863        765 EFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL  839 (1075)
Q Consensus       765 ~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V  839 (1075)
                      .+.|.|.+.|.|.|.++|+|+|.++..+.++.+....    .|.|.+++.+|+|.|+|.|.|.+|++.+++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~----~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH----NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC----CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            3789999999999999999999999877777664432    4888899999999999999999999999888865

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.53  E-value=1.1e-13  Score=116.92  Aligned_cols=80  Identities=16%  Similarity=0.265  Sum_probs=65.3

Q ss_pred             CeEEEEEEEecCCCC--eEEEEECCEEeecC---CcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEE
Q psy16863        764 EEFKFTVQVSISPEP--KVSWFRDDQQVVES---DNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK  838 (1075)
Q Consensus       764 ~~~~l~C~v~g~p~p--~v~W~k~g~~i~~~---~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~  838 (1075)
                      ++++|.|.+.|.|.|  .++|+|||.+|...   .++.+.........|+|.+++.+|+|.|+|.|.|.+|++.+++.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            468999999999987  68999999998643   2443322222345899999999999999999999999999999999


Q ss_pred             EEecC
Q psy16863        839 LNVPK  843 (1075)
Q Consensus       839 V~~~~  843 (1075)
                      |..||
T Consensus        81 V~~~P   85 (85)
T cd05854          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            98754

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.52  E-value=7.9e-14  Score=118.91  Aligned_cols=88  Identities=16%  Similarity=0.214  Sum_probs=76.5

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCC
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAV  428 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~  428 (1075)
                      ||.|...+.+..+.+|+.+.|.|.+.|.|.|.++|+|++..+....++.  ..+.  .|.|.++..+|+|.|+|.|.|..
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~--~~~~--~L~I~~v~~~D~G~Y~C~A~N~~   76 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEIS--MSGA--VLKIFNIQPEDEGTYECEAENIK   76 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEe--cCCC--EEEECcCChhhCEEEEEEEEcCC
Confidence            5788888899999999999999999999999999999998887654433  2333  58999999999999999999999


Q ss_pred             CceeeEEEEEee
Q psy16863        429 GRSHCSCELSVL  440 (1075)
Q Consensus       429 g~~~~s~~l~V~  440 (1075)
                      |....++.|.|.
T Consensus        77 G~~~~~~~l~V~   88 (88)
T cd05851          77 GKDKHQARVYVQ   88 (88)
T ss_pred             CceEEEEEEEEC
Confidence            999988888763

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.52  E-value=1.2e-13  Score=118.85  Aligned_cols=86  Identities=20%  Similarity=0.313  Sum_probs=71.4

Q ss_pred             eccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEE
Q psy16863        753 EGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSI  832 (1075)
Q Consensus       753 ~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~  832 (1075)
                      .++.+..+..|+.+.|.|.+.|.|.|.++|+|+|..+......... .......|.|.++..+|.|.|+|.|.|.+|.+.
T Consensus         5 ~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~   83 (90)
T cd04972           5 DGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLE-TTVDIYNLQLSNITSETQTTVTCTAENPVGQAN   83 (90)
T ss_pred             cCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEE-ecCCEEEEEEecCCcccCEEEEEEEECCCCcee
Confidence            3445666889999999999999999999999999988765543322 223456899999999999999999999999998


Q ss_pred             EEEEEEE
Q psy16863        833 TSCFLKL  839 (1075)
Q Consensus       833 ~s~~l~V  839 (1075)
                      +++.|.|
T Consensus        84 ~~~~L~v   90 (90)
T cd04972          84 VSVQVTV   90 (90)
T ss_pred             EEEEEeC
Confidence            8888764

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.52  E-value=8.1e-14  Score=115.13  Aligned_cols=75  Identities=16%  Similarity=0.347  Sum_probs=62.2

Q ss_pred             CCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863        763 NEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL  839 (1075)
Q Consensus       763 g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V  839 (1075)
                      |+.+.|.|.+.|.|.|+|+|+|+|+++...........+.  ..|.|.+++.+|+|.|+|.|+|.+|.+.+++.|.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~--~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDG--DTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecC--CEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            6789999999999999999999999986443211111222  26899999999999999999999999999998887

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.52  E-value=1.1e-13  Score=114.85  Aligned_cols=75  Identities=19%  Similarity=0.343  Sum_probs=62.2

Q ss_pred             CCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863        763 NEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL  839 (1075)
Q Consensus       763 g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V  839 (1075)
                      |+.+.|.|.+.|.|.|+++|+|+|.++.............  ..|.|.+++.+|+|.|+|.|.|.+|...+++.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSS--GALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeC--CEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            6889999999999999999999999987543211111122  26999999999999999999999999998888876

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.51  E-value=1.4e-13  Score=118.58  Aligned_cols=83  Identities=19%  Similarity=0.362  Sum_probs=71.5

Q ss_pred             eeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEE
Q psy16863        757 SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCF  836 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~  836 (1075)
                      .+.+.+|+.+.|.|.+.|.|.|.+.|||+|..+..+.++.+.........|.|.+++.+|+|.|+|.|.|.+|.+..++.
T Consensus        10 ~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   89 (92)
T cd05891          10 VVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVT   89 (92)
T ss_pred             cEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEE
Confidence            45688999999999999999999999999999987777766544444568999999999999999999999999987776


Q ss_pred             EEE
Q psy16863        837 LKL  839 (1075)
Q Consensus       837 l~V  839 (1075)
                      |.|
T Consensus        90 v~~   92 (92)
T cd05891          90 VSV   92 (92)
T ss_pred             EEC
Confidence            654

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.51  E-value=1.4e-13  Score=120.64  Aligned_cols=90  Identities=22%  Similarity=0.470  Sum_probs=72.7

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEE--CCEEeec-----CCcEEEEEeeCcEEEEEEccccCCCCeEE
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFR--DDQQVVE-----SDNVKILKETLGVCHLKIHALEVADQAEW  820 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k--~g~~i~~-----~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y  820 (1075)
                      +|.+.. +++..+.+|+.++|.|.+.|.|.|.|+|+|  +|..+..     +.++.+.. ..+...|+|.+++.+|+|.|
T Consensus         2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~-~~~~~~L~I~~v~~~D~G~Y   79 (98)
T cd05870           2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKG-QHGESSLHIKDVKLSDSGRY   79 (98)
T ss_pred             CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEee-cCCeeEEEEeeCCcCCCEEE
Confidence            566654 778899999999999999999999999999  4555532     23555532 23456899999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEE
Q psy16863        821 KCIATNDFGQSITSCFLKL  839 (1075)
Q Consensus       821 ~C~A~N~~G~~~~s~~l~V  839 (1075)
                      +|.|.|.+|.+..++.|.|
T Consensus        80 ~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          80 DCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEEEeccCCcceeEEEEeC
Confidence            9999999999988888764

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.51  E-value=2.5e-13  Score=114.99  Aligned_cols=82  Identities=26%  Similarity=0.354  Sum_probs=72.7

Q ss_pred             ceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCC-CcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEE
Q psy16863        358 DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN-KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCE  436 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~  436 (1075)
                      .+.+.+|+.+.|.|.+.|.|.|.+.|+|+|.++... .++.+...+....|.|.++..+|+|.|+|.|.|..|....++.
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~   83 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF   83 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence            467889999999999999999999999999999764 4677777667778999999999999999999999999888777


Q ss_pred             EEe
Q psy16863        437 LSV  439 (1075)
Q Consensus       437 l~V  439 (1075)
                      |.|
T Consensus        84 l~V   86 (86)
T cd05894          84 VKV   86 (86)
T ss_pred             EEC
Confidence            764

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.51  E-value=1.4e-13  Score=113.74  Aligned_cols=74  Identities=23%  Similarity=0.363  Sum_probs=64.8

Q ss_pred             eEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863        765 EFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL  839 (1075)
Q Consensus       765 ~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V  839 (1075)
                      .+.|.|.+.|.|.|.++|+|+|.++..+.++.+... .....|.|.++..+|+|.|+|.|.|.+|.++.++.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETT-ASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEEC-CCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            378999999999999999999999977777776543 34678999999999999999999999999988877764

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.50  E-value=1.5e-13  Score=119.48  Aligned_cols=85  Identities=25%  Similarity=0.355  Sum_probs=72.2

Q ss_pred             CceeeccCCeEEEEEEEec-CCCcEEEEEECCEecCCCCcEEEEEcC-----CEEEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863        357 HDIAVKVGTRARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDG-----NFYFIDLSSVSLFDSGRWTCLAENAVGR  430 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~~~~~~~g-----~~~~L~I~~v~~~d~G~Y~C~a~n~~g~  430 (1075)
                      ..+.+.+|++++|.|.+.| .|+|.+.|+|||.+|.......+...+     ....|.|.++..+|+|.|+|.|+|..|.
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~   90 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence            5678899999999999999 899999999999999865554433332     2467999999999999999999999999


Q ss_pred             eeeEEEEEeec
Q psy16863        431 SHCSCELSVLV  441 (1075)
Q Consensus       431 ~~~s~~l~V~~  441 (1075)
                      .+.++.|.|.+
T Consensus        91 ~~~t~~L~V~v  101 (101)
T cd04975          91 KSLTFELYVNV  101 (101)
T ss_pred             EEEEEEEEEEC
Confidence            99888888764

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.50  E-value=1.3e-13  Score=118.29  Aligned_cols=88  Identities=17%  Similarity=0.247  Sum_probs=73.6

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeC
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND  827 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~  827 (1075)
                      ||.+...+.+..+.+|+.+.|.|.+.|.|.|.++|+|++..+.......   ..  ...|.|.+++.+|+|.|+|.|.|.
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~---~~--~~~L~i~~v~~~D~G~Y~C~a~N~   75 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS---MS--GAVLKIPNIQFEDEGTYECEAENI   75 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE---Ee--CCEEEECCCCcccCEEEEEEEEEC
Confidence            4556666778889999999999999999999999999988765544332   12  247999999999999999999999


Q ss_pred             CceEEEEEEEEEE
Q psy16863        828 FGQSITSCFLKLN  840 (1075)
Q Consensus       828 ~G~~~~s~~l~V~  840 (1075)
                      .|....++.|.|+
T Consensus        76 ~G~~~~~~~l~V~   88 (88)
T cd04968          76 KGKDTHQGRIYVQ   88 (88)
T ss_pred             CCcEEEEEEEEEC
Confidence            9999888888763

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.50  E-value=2.3e-13  Score=119.07  Aligned_cols=91  Identities=21%  Similarity=0.427  Sum_probs=71.5

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCC-----cEEEEEeeCcEEEEEEccccCCCCeEEEE
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESD-----NVKILKETLGVCHLKIHALEVADQAEWKC  822 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~-----~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C  822 (1075)
                      .|.|........+..|+.++|.|.+.|.|.|.++|+|+++.+....     ++.+.. ......|.|.+++.+|+|.|+|
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~-~~~~~~L~I~~v~~~D~G~Y~C   80 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRS-HARVSSLTLKYIQYTDAGEYLC   80 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEc-CccEEEEEEecCccCcCEEEEE
Confidence            4566655555555568999999999999999999999998775432     233322 2234689999999999999999


Q ss_pred             EEEeCCceEEEEEEEEE
Q psy16863        823 IATNDFGQSITSCFLKL  839 (1075)
Q Consensus       823 ~A~N~~G~~~~s~~l~V  839 (1075)
                      .|.|.+|.+..++.|.|
T Consensus        81 ~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          81 TASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EEecCCCCeeEEEEEEC
Confidence            99999999988888765

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.50  E-value=1.8e-13  Score=119.58  Aligned_cols=83  Identities=20%  Similarity=0.404  Sum_probs=70.4

Q ss_pred             ceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecC-CcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEE
Q psy16863        756 KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVES-DNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITS  834 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s  834 (1075)
                      .+..+..|+++.|.|.+.|.|.|.+.|+|+|..+... .++.+.  . ....|.|.+++.+|+|.|+|.|.|.+|.+..+
T Consensus        11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~--~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   87 (95)
T cd05730          11 VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFN--E-DGSEMTILDVDKLDEAEYTCIAENKAGEQEAE   87 (95)
T ss_pred             cceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEe--C-CCCEEEECCCChhhCEEEEEEEEcCCCeEEEE
Confidence            3457889999999999999999999999999998765 344332  2 23479999999999999999999999999999


Q ss_pred             EEEEEEe
Q psy16863        835 CFLKLNV  841 (1075)
Q Consensus       835 ~~l~V~~  841 (1075)
                      +.|.|.+
T Consensus        88 ~~L~V~~   94 (95)
T cd05730          88 IHLKVFA   94 (95)
T ss_pred             EEEEEEe
Confidence            9988864

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.50  E-value=1.2e-13  Score=109.09  Aligned_cols=65  Identities=25%  Similarity=0.402  Sum_probs=56.2

Q ss_pred             EEEEEEEEccCCCeeEEEECCEEcCC-CCeeEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEe
Q psy16863        864 VNLECKVIGVPQPTLKWFKDGRELKA-GDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGF  928 (1075)
Q Consensus       864 ~~L~C~v~g~p~p~v~W~k~g~~l~~-~~~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~  928 (1075)
                      ++|.|.+.|.|.|.++|||||++|.. .....|.+.....+|+|.|+|.|+|.+|..+.+.+|.++
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGKHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECcccCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            47999999999999999999999963 334577888888899999999999999988888777654

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.49  E-value=2.3e-13  Score=116.22  Aligned_cols=81  Identities=15%  Similarity=0.387  Sum_probs=67.4

Q ss_pred             eeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEE
Q psy16863        759 QATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK  838 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~  838 (1075)
                      .+..|+.+.|.|.+.|.|.|.++|+|+|.++..+.+............|.|.++..+|+|.|+|.|.|.+|.+..++.|.
T Consensus         5 ~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   84 (85)
T cd05857           5 AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD   84 (85)
T ss_pred             EcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence            47789999999999999999999999999997665432211122345799999999999999999999999998888776


Q ss_pred             E
Q psy16863        839 L  839 (1075)
Q Consensus       839 V  839 (1075)
                      |
T Consensus        85 v   85 (85)
T cd05857          85 V   85 (85)
T ss_pred             C
Confidence            5

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.49  E-value=1.4e-13  Score=112.49  Aligned_cols=72  Identities=17%  Similarity=0.281  Sum_probs=58.8

Q ss_pred             EEEEEEecCCCCeEEEEECCEEeecCCcEEEE--E--eeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEE
Q psy16863        767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKIL--K--ETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK  838 (1075)
Q Consensus       767 ~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~--~--~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~  838 (1075)
                      .|.|.+.|.|.|+|+|||||++|..+.++...  .  .......|.|.++..+|+|.|+|+|+|.+|++..++.+.
T Consensus         2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            47899999999999999999999877654321  1  112346899999999999999999999999987776554

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.49  E-value=3.7e-13  Score=116.33  Aligned_cols=83  Identities=20%  Similarity=0.404  Sum_probs=72.6

Q ss_pred             CceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEc-CCEEEEEEcccCCCCceeEEEEEEeCCCceeeEE
Q psy16863        357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHD-GNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC  435 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~-g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~  435 (1075)
                      ..+.+.+|++++|.|.+.|.|.|.+.|+|+|.++....++.+... +....|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus         9 ~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   88 (92)
T cd05737           9 DVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDV   88 (92)
T ss_pred             ceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEE
Confidence            446889999999999999999999999999999988777776644 5566899999999999999999999999988777


Q ss_pred             EEEe
Q psy16863        436 ELSV  439 (1075)
Q Consensus       436 ~l~V  439 (1075)
                      .|.|
T Consensus        89 ~v~v   92 (92)
T cd05737          89 TVSV   92 (92)
T ss_pred             EEeC
Confidence            6654

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.48  E-value=1.6e-13  Score=113.93  Aligned_cols=80  Identities=14%  Similarity=0.226  Sum_probs=64.8

Q ss_pred             CeEEEEEEEecCC--CCeEEEEECCEEeec---CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEE
Q psy16863        764 EEFKFTVQVSISP--EPKVSWFRDDQQVVE---SDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK  838 (1075)
Q Consensus       764 ~~~~l~C~v~g~p--~p~v~W~k~g~~i~~---~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~  838 (1075)
                      +++.|.|.+.+.|  ++.|.|+|||++|..   +.+|.+.........|.|.+++..|+|.|+|.|.|.+++..+++.|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            4689999998744  789999999999962   23454432111233799999999999999999999999999999999


Q ss_pred             EEecC
Q psy16863        839 LNVPK  843 (1075)
Q Consensus       839 V~~~~  843 (1075)
                      |.+||
T Consensus        81 V~~pP   85 (85)
T cd05853          81 VRGPP   85 (85)
T ss_pred             EecCC
Confidence            99875

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.48  E-value=1.2e-13  Score=110.92  Aligned_cols=69  Identities=23%  Similarity=0.385  Sum_probs=58.6

Q ss_pred             EEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy16863        766 FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLN  840 (1075)
Q Consensus       766 ~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~  840 (1075)
                      +.|.|.+.|.|.|.++|+|||++|....++.    .  ...|.|.++..+|+|.|+|.|.|.+|..+.+.++.|.
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~----~--~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~   69 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFK----R--GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV   69 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEc----c--CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence            3689999999999999999999997654321    1  2379999999999999999999999988887777765

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.47  E-value=4.9e-13  Score=113.93  Aligned_cols=85  Identities=26%  Similarity=0.424  Sum_probs=69.5

Q ss_pred             eccceeeeecCCeEEEEEEEecCCCCeEEEEE-CCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceE
Q psy16863        753 EGLKSCQATVNEEFKFTVQVSISPEPKVSWFR-DDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQS  831 (1075)
Q Consensus       753 ~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k-~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~  831 (1075)
                      ..+.+..+.+|+++.|.|.+.|.|. .++|+| +|.++..+.++.+... .....|.|.++..+|+|.|+|.|+|..|..
T Consensus         5 ~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~-g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~   82 (92)
T cd05866           5 ISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKE-GVRSRLTIYNANIEDAGIYRCQATDAKGQT   82 (92)
T ss_pred             EEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeC-CCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence            3456677999999999999999998 999998 5788877778776543 335689999999999999999999999986


Q ss_pred             E-EEEEEEE
Q psy16863        832 I-TSCFLKL  839 (1075)
Q Consensus       832 ~-~s~~l~V  839 (1075)
                      . .+..|.+
T Consensus        83 ~~~~i~l~~   91 (92)
T cd05866          83 QEATVVLEI   91 (92)
T ss_pred             EEEEEEEEE
Confidence            4 3555443

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.47  E-value=3.9e-13  Score=111.81  Aligned_cols=72  Identities=18%  Similarity=0.314  Sum_probs=59.3

Q ss_pred             EEEEEEecCCCCeEEEEECCEEeecCCcEEEEEee------CcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEE
Q psy16863        767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKET------LGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK  838 (1075)
Q Consensus       767 ~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~------~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~  838 (1075)
                      .|.|.+.|.|.|+|+|+|||++|..+.++......      .....|+|.+++.+|+|.|+|.|+|.+|.+.+++.+.
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            47899999999999999999999877654432221      2355799999999999999999999999987776654

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.47  E-value=3.7e-13  Score=118.07  Aligned_cols=90  Identities=22%  Similarity=0.433  Sum_probs=73.1

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecC-----CcEEEEEeeCcEEEEEEccccCCCCeEEEE
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVES-----DNVKILKETLGVCHLKIHALEVADQAEWKC  822 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~-----~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C  822 (1075)
                      +|.|. .+.+..+.+|+++.|.|.+.|.|.|.++|+|++..+...     .++.+. .......|.|.+++.+|+|.|+|
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C   79 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVR-GHARVSSLTLKDVQLTDAGRYDC   79 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEe-CCccEEEEEECcCCcCcCEEeEE
Confidence            45664 466788999999999999999999999999999776543     233332 22345789999999999999999


Q ss_pred             EEEeCCceEEEEEEEEE
Q psy16863        823 IATNDFGQSITSCFLKL  839 (1075)
Q Consensus       823 ~A~N~~G~~~~s~~l~V  839 (1075)
                      .|.|.+|.+..++.|.|
T Consensus        80 ~a~N~~G~~~~s~~l~v   96 (96)
T cd05732          80 EASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EEEeCCCCcEEEEEEeC
Confidence            99999999988887764

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.47  E-value=2.2e-13  Score=112.07  Aligned_cols=73  Identities=22%  Similarity=0.490  Sum_probs=64.9

Q ss_pred             CCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863        763 NEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL  839 (1075)
Q Consensus       763 g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V  839 (1075)
                      |+.+.|.|.+.|.|.|.++|+|++..+..+.++.+...  +  .|.|.+++.+|+|.|+|.|.|.+|.+..++.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~--~--~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPD--G--SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCC--C--eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            67899999999999999999999999988777775432  2  6999999999999999999999999988888765

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.47  E-value=3.9e-13  Score=112.03  Aligned_cols=77  Identities=27%  Similarity=0.324  Sum_probs=66.7

Q ss_pred             CCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy16863        763 NEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLN  840 (1075)
Q Consensus       763 g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~  840 (1075)
                      |+++.|.|.+.|.|.|.++|+|++..+....++.+... .+...|.|.+++.+|+|.|+|.|.|..|...+.+.+.+.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~~   77 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSE-GGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGILT   77 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEEC-CCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEEE
Confidence            68899999999999999999999999887777766543 346789999999999999999999999998877666554

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.46  E-value=4.5e-13  Score=109.40  Aligned_cols=73  Identities=25%  Similarity=0.350  Sum_probs=63.0

Q ss_pred             EEEEEEEecCCCcEEEEEECCEecCC-CCcEEEEEc-CCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863        367 ARLLVEIRSPTEIKIHWYRNDRKLEE-NKIYRTQHD-GNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV  439 (1075)
Q Consensus       367 v~l~C~~~g~p~~~v~W~k~g~~l~~-~~~~~~~~~-g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V  439 (1075)
                      +.|.|.+.|.|.|.|.|+|||..|.. +.++.+..+ +...+|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            47999999999999999999999974 456666544 33457999999999999999999999999999888875

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.45  E-value=4.4e-13  Score=111.19  Aligned_cols=73  Identities=22%  Similarity=0.444  Sum_probs=59.5

Q ss_pred             EEEEEEEecCCCCeEEEEECCEEeecCC-cEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEe
Q psy16863        766 FKFTVQVSISPEPKVSWFRDDQQVVESD-NVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV  841 (1075)
Q Consensus       766 ~~l~C~v~g~p~p~v~W~k~g~~i~~~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~  841 (1075)
                      ++|.|.+.|.|.|.|+|+|+|.++..+. ++.+. ..  ...|.|.+++.+|+|.|+|.|.|.+|...++..+.|.+
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~-~~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v   74 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVS-SK--ERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI   74 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEe-CC--CCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence            4799999999999999999999987654 33332 22  24799999999999999999999999987666666654

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.45  E-value=2.7e-13  Score=110.20  Aligned_cols=70  Identities=19%  Similarity=0.386  Sum_probs=60.1

Q ss_pred             EEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy16863        766 FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLN  840 (1075)
Q Consensus       766 ~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~  840 (1075)
                      ++|.|.+.|.|.|.++|+|||+++..+.++..     ....|.|.+++.+|+|.|+|.|.|.+|....+..+.|.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~-----~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKK-----SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEEc-----CCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            46999999999999999999999987654332     13479999999999999999999999998888877765

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.45  E-value=4.7e-13  Score=111.56  Aligned_cols=75  Identities=17%  Similarity=0.299  Sum_probs=63.2

Q ss_pred             CCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863        763 NEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL  839 (1075)
Q Consensus       763 g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V  839 (1075)
                      |+.+.|.|.+.|.|.|.|+|+++|.++............  ...|.|.+++.+|+|.|+|.|.|..|...+++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~--~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVD--GGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEcc--CCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            688999999999999999999999998765433111122  247999999999999999999999999999888876

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.45  E-value=7.4e-13  Score=117.65  Aligned_cols=92  Identities=15%  Similarity=0.372  Sum_probs=69.9

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecC----CcEEEEEeeCcEEEEEE--ccccCCCCeEEE
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVES----DNVKILKETLGVCHLKI--HALEVADQAEWK  821 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~----~~~~~~~~~~~~~~L~I--~~~~~~D~G~Y~  821 (1075)
                      ||.|...+.+..+.+|+.+.|.|.+.|.|.|.++|+|+|..+...    ....+.........+.|  ..++.+|+|.|+
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~   80 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV   80 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence            578888888999999999999999999999999999999998762    22222222222233333  334799999999


Q ss_pred             EEEEeCCce-EEEEEEEEE
Q psy16863        822 CIATNDFGQ-SITSCFLKL  839 (1075)
Q Consensus       822 C~A~N~~G~-~~~s~~l~V  839 (1075)
                      |.|.|.+|. .+.++.|.|
T Consensus        81 C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          81 CVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEccccceecceEEEEe
Confidence            999999999 445666665

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.45  E-value=8.8e-13  Score=113.98  Aligned_cols=82  Identities=20%  Similarity=0.425  Sum_probs=65.1

Q ss_pred             CeEEeccceeeee---cCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEcccc-CCCCeEEEEEE
Q psy16863        749 PKFIEGLKSCQAT---VNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALE-VADQAEWKCIA  824 (1075)
Q Consensus       749 p~~~~~~~~~~~~---~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~A  824 (1075)
                      |.|+..+.++.+.   .|+.+.|.|.+.|.|.|+|+|+|||.+|.....+.+...+ +  .|.|.++. .+|+|.|+|.|
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~-g--~L~i~~~~~~~D~G~Y~C~A   78 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLID-G--NLIISNPSEVKDSGRYQCLA   78 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeC-C--eEEEccCCccCcCEEEEEEE
Confidence            6677777776554   4689999999999999999999999999755443333222 3  68898875 69999999999


Q ss_pred             EeCCceEEE
Q psy16863        825 TNDFGQSIT  833 (1075)
Q Consensus       825 ~N~~G~~~~  833 (1075)
                      .|.+|...+
T Consensus        79 ~N~~G~~~S   87 (94)
T cd05848          79 TNSIGSILS   87 (94)
T ss_pred             EcCCCeEEe
Confidence            999998754

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.45  E-value=3.6e-13  Score=109.69  Aligned_cols=73  Identities=26%  Similarity=0.483  Sum_probs=65.9

Q ss_pred             CCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863        364 GTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV  439 (1075)
Q Consensus       364 G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V  439 (1075)
                      |+.+.|.|.+.|.|.|.|+|+|++..+..+.++.+..++   .|.|.+++.+|+|.|+|.|+|..|....++.|+|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCC---EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            788999999999999999999999988888887776555   4899999999999999999999999998888865

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.45  E-value=1.2e-12  Score=112.76  Aligned_cols=86  Identities=20%  Similarity=0.275  Sum_probs=72.5

Q ss_pred             eecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceee
Q psy16863        354 RRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHC  433 (1075)
Q Consensus       354 ~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~  433 (1075)
                      .++.+..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+................|.|.++..+|.|.|+|.|.|..|....
T Consensus         5 ~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~   84 (90)
T cd04972           5 DGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANV   84 (90)
T ss_pred             cCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeE
Confidence            34456679999999999999999999999999999887655544444455668999999999999999999999999988


Q ss_pred             EEEEEe
Q psy16863        434 SCELSV  439 (1075)
Q Consensus       434 s~~l~V  439 (1075)
                      ++.|+|
T Consensus        85 ~~~L~v   90 (90)
T cd04972          85 SVQVTV   90 (90)
T ss_pred             EEEEeC
Confidence            887764

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.45  E-value=2.3e-13  Score=110.29  Aligned_cols=68  Identities=34%  Similarity=0.557  Sum_probs=59.9

Q ss_pred             EEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEE
Q psy16863        766 FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFL  837 (1075)
Q Consensus       766 ~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l  837 (1075)
                      +.|.|.+.|.|.|.++|+|+|.++..+.++.+...    ..|.|.+++.+|+|.|+|.|.|.+|.+..++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPE----GYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECCC----CEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            47999999999999999999999987777765432    379999999999999999999999999887766

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.44  E-value=7.3e-13  Score=112.72  Aligned_cols=80  Identities=14%  Similarity=0.183  Sum_probs=64.5

Q ss_pred             CeEEEEEEEecCCCC--eEEEEECCEEeecCC---cEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEE
Q psy16863        764 EEFKFTVQVSISPEP--KVSWFRDDQQVVESD---NVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK  838 (1075)
Q Consensus       764 ~~~~l~C~v~g~p~p--~v~W~k~g~~i~~~~---~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~  838 (1075)
                      +++.|.|.+.|.|.|  .++|+|+|.+|....   ++...........|.|.+++.+|+|.|+|.|.|.+|....++.|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            468999999999987  679999999986432   232222222345899999999999999999999999999999999


Q ss_pred             EEecC
Q psy16863        839 LNVPK  843 (1075)
Q Consensus       839 V~~~~  843 (1075)
                      |..||
T Consensus        81 V~~pP   85 (85)
T cd04970          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            98764

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.44  E-value=1.2e-12  Score=116.43  Aligned_cols=97  Identities=18%  Similarity=0.204  Sum_probs=73.7

Q ss_pred             CCCeEEeccceee-e---ecCCeEEEEEEEecCCCCeEEEEECCEEeecC-CcEEEEEeeC---cEEEEEEcccc-CCCC
Q psy16863        747 KAPKFIEGLKSCQ-A---TVNEEFKFTVQVSISPEPKVSWFRDDQQVVES-DNVKILKETL---GVCHLKIHALE-VADQ  817 (1075)
Q Consensus       747 ~~p~~~~~~~~~~-~---~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~-~~~~~~~~~~---~~~~L~I~~~~-~~D~  817 (1075)
                      .+|.|..++.... +   ..|..+.|.|.+.|.|.|.++|+|||..|... .++.+.....   ....|+|.++. .+|.
T Consensus         3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~   82 (109)
T cd05773           3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDY   82 (109)
T ss_pred             cccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCC
Confidence            4666665544222 2   24678999999999999999999999998643 3554332211   13579999997 6999


Q ss_pred             eEEEEEEEeCCceEEEEEEEEEEecC
Q psy16863        818 AEWKCIATNDFGQSITSCFLKLNVPK  843 (1075)
Q Consensus       818 G~Y~C~A~N~~G~~~~s~~l~V~~~~  843 (1075)
                      |.|+|.|.|.+|.+..++.|.|..+|
T Consensus        83 G~Y~C~A~N~~G~~~~~i~L~~~~~p  108 (109)
T cd05773          83 ALFTCTAHNSLGEDSLDIQLVSTSRP  108 (109)
T ss_pred             EEEEEEEEeCCccCcEEEEEEecCCC
Confidence            99999999999999989988887653

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.44  E-value=4.7e-13  Score=110.29  Aligned_cols=74  Identities=26%  Similarity=0.448  Sum_probs=64.9

Q ss_pred             cCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863        363 VGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV  439 (1075)
Q Consensus       363 ~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V  439 (1075)
                      +|+.+.|.|.+.|.|.|.|+|+|+|..+....++.+...+   .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSG---TLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCC---eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            6899999999999999999999999998776665554443   5899999999999999999999999988888765

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.44  E-value=8.3e-13  Score=108.08  Aligned_cols=73  Identities=21%  Similarity=0.401  Sum_probs=62.9

Q ss_pred             EEEEEEEecCCCcEEEEEECCEecCC-CCcEEEEEcC-CEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863        367 ARLLVEIRSPTEIKIHWYRNDRKLEE-NKIYRTQHDG-NFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV  439 (1075)
Q Consensus       367 v~l~C~~~g~p~~~v~W~k~g~~l~~-~~~~~~~~~g-~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V  439 (1075)
                      ++|.|.+.|.|.|.|.|+|+|..+.. ..++.+..++ ....|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            57999999999999999999999875 3566665544 3447999999999999999999999999999888875

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.43  E-value=1.8e-12  Score=110.53  Aligned_cols=85  Identities=20%  Similarity=0.378  Sum_probs=72.3

Q ss_pred             eecCceeeccCCeEEEEEEEecCCCcEEEEEE-CCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCce-
Q psy16863        354 RRLHDIAVKVGTRARLLVEIRSPTEIKIHWYR-NDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS-  431 (1075)
Q Consensus       354 ~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k-~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~-  431 (1075)
                      ..+.+..+.+|+++.|.|.+.|.|. .++|++ +|..+..+.++.+..++....|.|.++..+|+|.|+|.|+|..|.. 
T Consensus         5 ~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~   83 (92)
T cd05866           5 ISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQ   83 (92)
T ss_pred             EEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEE
Confidence            3557788999999999999999987 999998 5778877788888778877889999999999999999999999986 


Q ss_pred             eeEEEEEe
Q psy16863        432 HCSCELSV  439 (1075)
Q Consensus       432 ~~s~~l~V  439 (1075)
                      ..+..|.|
T Consensus        84 ~~~i~l~~   91 (92)
T cd05866          84 EATVVLEI   91 (92)
T ss_pred             EEEEEEEE
Confidence            44555544

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.43  E-value=7e-13  Score=109.55  Aligned_cols=68  Identities=24%  Similarity=0.436  Sum_probs=57.6

Q ss_pred             CCeEEEEEEEEccCCCeeEEEECCEEcCCCC--------eeEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEe
Q psy16863        861 GGAVNLECKVIGVPQPTLKWFKDGRELKAGD--------IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGF  928 (1075)
Q Consensus       861 g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~--------~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~  928 (1075)
                      |+.++|.|.+.|.|.|+|+|+|||+++....        ...|.+......|+|.|+|.|+|.+|.+.+++.|.|+
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~   76 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL   76 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence            6789999999999999999999999986321        1245556667789999999999999999999999874

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.42  E-value=1e-12  Score=114.59  Aligned_cols=84  Identities=23%  Similarity=0.256  Sum_probs=70.9

Q ss_pred             ceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEc------CCEEEEEEcccCCCCceeEEEEEEeCCCce
Q psy16863        358 DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHD------GNFYFIDLSSVSLFDSGRWTCLAENAVGRS  431 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~------g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~  431 (1075)
                      ...+..|+.+.|.|.+.|.|+|.+.|+|||.+|..+.+......      ...+.|.|.++..+|+|.|+|.|+|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            56788899999999999999999999999999987655433221      123579999999999999999999999999


Q ss_pred             eeEEEEEeec
Q psy16863        432 HCSCELSVLV  441 (1075)
Q Consensus       432 ~~s~~l~V~~  441 (1075)
                      +.++.|.|.+
T Consensus        92 ~~t~~l~V~v  101 (101)
T cd05859          92 SYTFALQIQV  101 (101)
T ss_pred             EEEEEEEEEC
Confidence            9888888763

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.42  E-value=1e-12  Score=108.99  Aligned_cols=68  Identities=26%  Similarity=0.535  Sum_probs=58.8

Q ss_pred             CCeEEEEEEEEccCCCeeEEEECCEEcCCCC--------eeEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEe
Q psy16863        861 GGAVNLECKVIGVPQPTLKWFKDGRELKAGD--------IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGF  928 (1075)
Q Consensus       861 g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~--------~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~  928 (1075)
                      |++++|.|.+.|.|.|+|+|+|||.++....        ...|.+......|+|.|+|.|.|.+|...+++.|.|+
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   76 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHVV   76 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEEC
Confidence            6789999999999999999999999986532        1346667777899999999999999999999998873

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.42  E-value=2e-12  Score=111.47  Aligned_cols=85  Identities=18%  Similarity=0.360  Sum_probs=69.4

Q ss_pred             ecCceeeccCCeEEEEEEEecCC-CcEEEEEE-CCEecCC-CCcEEEEE-cCCEEEEEEcccCCCCceeEEEEEEeCC-C
Q psy16863        355 RLHDIAVKVGTRARLLVEIRSPT-EIKIHWYR-NDRKLEE-NKIYRTQH-DGNFYFIDLSSVSLFDSGRWTCLAENAV-G  429 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~~g~p-~~~v~W~k-~g~~l~~-~~~~~~~~-~g~~~~L~I~~v~~~d~G~Y~C~a~n~~-g  429 (1075)
                      .+....+.+|++++|.|.+.|.| +|.|+|++ ||..+.. +.++.+.. ++...+|.|.+++.+|+|.|+|.|+|.+ |
T Consensus         6 ~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g   85 (96)
T cd05865           6 VPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEG   85 (96)
T ss_pred             eCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCC
Confidence            34566789999999999999998 47999998 7877655 44555443 3445789999999999999999999997 8


Q ss_pred             ceeeEEEEEe
Q psy16863        430 RSHCSCELSV  439 (1075)
Q Consensus       430 ~~~~s~~l~V  439 (1075)
                      ...+++.|.|
T Consensus        86 ~~~~s~~l~v   95 (96)
T cd05865          86 ESEATVNVKI   95 (96)
T ss_pred             cEEEEEEEEE
Confidence            8888888776

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.42  E-value=1.1e-12  Score=111.24  Aligned_cols=84  Identities=24%  Similarity=0.445  Sum_probs=72.7

Q ss_pred             eeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCce
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS  431 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~  431 (1075)
                      |+..|.+..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+....++...  +.  .|.|.++..+|+|.|+|.|.|..|..
T Consensus         2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~--~~--~L~i~~~~~~D~G~Y~C~a~N~~G~~   77 (85)
T cd05728           2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE--AG--DLRITKLSLSDSGMYQCVAENKHGTI   77 (85)
T ss_pred             ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe--CC--EEEEeeCCHHHCEEEEEEEECCCCeE
Confidence            455677889999999999999999999999999999999876665542  22  48899999999999999999999998


Q ss_pred             eeEEEEEe
Q psy16863        432 HCSCELSV  439 (1075)
Q Consensus       432 ~~s~~l~V  439 (1075)
                      ..++.|.|
T Consensus        78 ~~~~~l~V   85 (85)
T cd05728          78 YASAELAV   85 (85)
T ss_pred             EEEEEEEC
Confidence            88887765

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.42  E-value=1.9e-12  Score=106.91  Aligned_cols=74  Identities=18%  Similarity=0.289  Sum_probs=66.7

Q ss_pred             eEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863        366 RARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV  439 (1075)
Q Consensus       366 ~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V  439 (1075)
                      .+.|.|.+.|.|.|.+.|+|+|..+..+.++.+...+....|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            37899999999999999999999998778888877777788999999999999999999999999888877764

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.42  E-value=1.2e-12  Score=105.42  Aligned_cols=68  Identities=18%  Similarity=0.444  Sum_probs=57.0

Q ss_pred             CCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEE
Q psy16863        763 NEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFL  837 (1075)
Q Consensus       763 g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l  837 (1075)
                      |+++.|+|.+.|.|.|.|+|+|+|.++....++..     +...|.|.+++  |+|.|+|.|.|.+|...+++.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~-----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV-----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceec-----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            67899999999999999999999999866554332     23479999874  8999999999999998887765

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.41  E-value=2.1e-12  Score=113.18  Aligned_cols=90  Identities=22%  Similarity=0.338  Sum_probs=73.3

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEE--CCEecCC-----CCcEEEEEcCCEEEEEEcccCCCCceeEE
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYR--NDRKLEE-----NKIYRTQHDGNFYFIDLSSVSLFDSGRWT  421 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k--~g~~l~~-----~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~  421 (1075)
                      +|.+. .+.+..+.+|+.++|.|.+.|.|.|.|.|+|  +|..+..     +.++.+........|.|.+++.+|+|.|+
T Consensus         2 ~p~i~-~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~   80 (98)
T cd05870           2 QPHII-QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD   80 (98)
T ss_pred             CCEEE-eeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence            56665 4678999999999999999999999999999  4444432     24555554445567999999999999999


Q ss_pred             EEEEeCCCceeeEEEEEe
Q psy16863        422 CLAENAVGRSHCSCELSV  439 (1075)
Q Consensus       422 C~a~n~~g~~~~s~~l~V  439 (1075)
                      |.|.|..|....++.|.|
T Consensus        81 C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          81 CEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEEeccCCcceeEEEEeC
Confidence            999999999888877764

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.41  E-value=5.7e-13  Score=108.59  Aligned_cols=70  Identities=21%  Similarity=0.325  Sum_probs=58.3

Q ss_pred             EEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863        766 FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL  839 (1075)
Q Consensus       766 ~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V  839 (1075)
                      +.|+|.+.|.|.|.+.|+|++.++..+. .... .  ....|.|.+++.+|+|.|+|.|.|.+|.+..++.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~~-~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TKKL-N--NNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCc-eeEE-c--CCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            4699999999999999999998876543 2221 1  2348999999999999999999999999988888776

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.41  E-value=2e-12  Score=111.07  Aligned_cols=81  Identities=19%  Similarity=0.349  Sum_probs=63.9

Q ss_pred             CCeEEeccceeeeecC---CeEEEEEEEecCCCCeEEEEECCEEeec-CCcEEEEEeeCcEEEEEEcccc-CCCCeEEEE
Q psy16863        748 APKFIEGLKSCQATVN---EEFKFTVQVSISPEPKVSWFRDDQQVVE-SDNVKILKETLGVCHLKIHALE-VADQAEWKC  822 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g---~~~~l~C~v~g~p~p~v~W~k~g~~i~~-~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C  822 (1075)
                      +|.|...+.++.+.++   ..+.|.|.+.|.|.|+|+|+|++.++.. ..++.+.   ++  .|.|.++. .+|+|.|+|
T Consensus         1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~---~g--~L~I~~~~~~~D~G~Y~C   75 (93)
T cd05849           1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV---GG--NLVINNPDKYKDAGRYVC   75 (93)
T ss_pred             CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEE---CC--EEEECcCCcCCCCEEEEE
Confidence            3667777776655544   4899999999999999999999998864 3444332   23  69999985 699999999


Q ss_pred             EEEeCCceEEE
Q psy16863        823 IATNDFGQSIT  833 (1075)
Q Consensus       823 ~A~N~~G~~~~  833 (1075)
                      .|+|.+|...+
T Consensus        76 ~A~N~~G~~~s   86 (93)
T cd05849          76 IVSNIYGKVRS   86 (93)
T ss_pred             EEEeCcceEEE
Confidence            99999998755

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.41  E-value=2.8e-12  Score=110.95  Aligned_cols=80  Identities=20%  Similarity=0.370  Sum_probs=63.6

Q ss_pred             CeEEeccceeeeecC---CeEEEEEEEecCCCCeEEEEECCEEeecCC--cEEEEEeeCcEEEEEEcccc-CCCCeEEEE
Q psy16863        749 PKFIEGLKSCQATVN---EEFKFTVQVSISPEPKVSWFRDDQQVVESD--NVKILKETLGVCHLKIHALE-VADQAEWKC  822 (1075)
Q Consensus       749 p~~~~~~~~~~~~~g---~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~--~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C  822 (1075)
                      |.|...+.++.+.+|   +.+.|.|.+.|.|.|.|+|+|||.++....  ++.+.   .+  .|.|.++. ..|+|.|+|
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~---~g--~L~I~~~~~~~D~G~Y~C   76 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV---AG--NLVINNPQKARDAGSYQC   76 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE---CC--eEEEccCCccCcCEEEEE
Confidence            567777777766555   589999999999999999999999986443  33332   22  68898865 699999999


Q ss_pred             EEEeCCceEEE
Q psy16863        823 IATNDFGQSIT  833 (1075)
Q Consensus       823 ~A~N~~G~~~~  833 (1075)
                      .|+|.+|...+
T Consensus        77 ~A~N~~G~~~s   87 (94)
T cd05850          77 LAINRCGTVVS   87 (94)
T ss_pred             EEEcCcCcEEE
Confidence            99999998765

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.41  E-value=2.5e-12  Score=112.45  Aligned_cols=91  Identities=19%  Similarity=0.299  Sum_probs=73.7

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCC-----CcEEEEEcCCEEEEEEcccCCCCceeEEEE
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN-----KIYRTQHDGNFYFIDLSSVSLFDSGRWTCL  423 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-----~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~  423 (1075)
                      .|.|...+....+..|+.++|.|.+.|.|.|.|+|+|++..+...     .++.+..+.....|.|.+++.+|+|.|+|.
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT   81 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence            466665555556667899999999999999999999999877543     234444455557899999999999999999


Q ss_pred             EEeCCCceeeEEEEEe
Q psy16863        424 AENAVGRSHCSCELSV  439 (1075)
Q Consensus       424 a~n~~g~~~~s~~l~V  439 (1075)
                      |.|..|....++.|.|
T Consensus        82 A~N~~G~~~~~~~l~v   97 (97)
T cd05869          82 ASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EecCCCCeeEEEEEEC
Confidence            9999999988887765

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.40  E-value=1.2e-12  Score=112.66  Aligned_cols=78  Identities=18%  Similarity=0.358  Sum_probs=64.4

Q ss_pred             CCeEEEEEEEecCCCCeEEEEECCEEee--------cCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEE
Q psy16863        763 NEEFKFTVQVSISPEPKVSWFRDDQQVV--------ESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITS  834 (1075)
Q Consensus       763 g~~~~l~C~v~g~p~p~v~W~k~g~~i~--------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s  834 (1075)
                      |+.+.|.|.+.|.|.|.+.|+|+|..+.        ...++.+..  .  ..|+|.+++.+|+|.|+|.|.|.+|....+
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~--~--~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   76 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ--T--GDLTITNVQRSDVGYYICQTLNVAGSILTK   76 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECC--C--CeEEEeeCChhhCEEEEEEEEcCCCceEEE
Confidence            6889999999999999999999987531        234454422  2  269999999999999999999999999999


Q ss_pred             EEEEEEecCC
Q psy16863        835 CFLKLNVPKH  844 (1075)
Q Consensus       835 ~~l~V~~~~~  844 (1075)
                      +.|.|.....
T Consensus        77 ~~l~V~~~~~   86 (90)
T cd05726          77 AYLEVTDVIA   86 (90)
T ss_pred             EEEEEeeccc
Confidence            9999986543

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.40  E-value=1.4e-12  Score=104.76  Aligned_cols=65  Identities=22%  Similarity=0.307  Sum_probs=55.1

Q ss_pred             EEEEEEEEccCCCeeEEEECCEEcCCCCe----eEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEe
Q psy16863        864 VNLECKVIGVPQPTLKWFKDGRELKAGDI----HKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGF  928 (1075)
Q Consensus       864 ~~L~C~v~g~p~p~v~W~k~g~~l~~~~~----~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~  928 (1075)
                      +.|.|.+.|.|.|.++|||||.+|..+..    ..|.+......|+|.|+|.|.|.+|.++.+.++.++
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~   69 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV   69 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence            47999999999999999999999976432    357777888899999999999999988877776653

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.40  E-value=2.5e-12  Score=110.77  Aligned_cols=83  Identities=25%  Similarity=0.413  Sum_probs=66.7

Q ss_pred             cceeeeecCCeEEEEEEEecCCCCeEEEEE-CCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCce-EE
Q psy16863        755 LKSCQATVNEEFKFTVQVSISPEPKVSWFR-DDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQ-SI  832 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k-~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~-~~  832 (1075)
                      +.+..+..|+++.|.|.+.|.|. .++|++ +|..+....++.+.........|+|.+++.+|+|.|+|.|.|.+|. +.
T Consensus         7 p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~   85 (92)
T cd04977           7 PSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESE   85 (92)
T ss_pred             cCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcce
Confidence            34567889999999999999975 999998 6777776666666555555679999999999999999999999765 45


Q ss_pred             EEEEEE
Q psy16863        833 TSCFLK  838 (1075)
Q Consensus       833 ~s~~l~  838 (1075)
                      .++.|.
T Consensus        86 ~sv~l~   91 (92)
T cd04977          86 ATVNLK   91 (92)
T ss_pred             eEEEEE
Confidence            555554

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.40  E-value=2.5e-12  Score=112.32  Aligned_cols=83  Identities=22%  Similarity=0.441  Sum_probs=70.7

Q ss_pred             CceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCC-CcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEE
Q psy16863        357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN-KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC  435 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~  435 (1075)
                      .+..+..|+.+.|.|.+.|.|.+.|.|+|+|..+... .++....++  ..|.|.+++.+|+|.|+|.|.|..|....++
T Consensus        11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   88 (95)
T cd05730          11 VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDG--SEMTILDVDKLDEAEYTCIAENKAGEQEAEI   88 (95)
T ss_pred             cceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCC--CEEEECCCChhhCEEEEEEEEcCCCeEEEEE
Confidence            4557899999999999999999999999999998765 444443333  3599999999999999999999999999888


Q ss_pred             EEEeec
Q psy16863        436 ELSVLV  441 (1075)
Q Consensus       436 ~l~V~~  441 (1075)
                      .|.|.+
T Consensus        89 ~L~V~~   94 (95)
T cd05730          89 HLKVFA   94 (95)
T ss_pred             EEEEEe
Confidence            888864

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.39  E-value=1e-12  Score=108.77  Aligned_cols=71  Identities=15%  Similarity=0.343  Sum_probs=57.3

Q ss_pred             EEEEEEEecCCCCeEEEEECCEEee---cCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863        766 FKFTVQVSISPEPKVSWFRDDQQVV---ESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL  839 (1075)
Q Consensus       766 ~~l~C~v~g~p~p~v~W~k~g~~i~---~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V  839 (1075)
                      ++|.|.+.|.|.|.++|+|+|..+.   ...++.+.. .  ...|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~-~--~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMP-E--DDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEec-C--CCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            4799999999999999999986432   223444322 1  237999999999999999999999999988888877

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.39  E-value=4e-12  Score=108.32  Aligned_cols=81  Identities=21%  Similarity=0.356  Sum_probs=68.7

Q ss_pred             CCeEEEEEEEecCCCcEEEEEECCEecCCC-CcEEEEE--cC--CEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEE
Q psy16863        364 GTRARLLVEIRSPTEIKIHWYRNDRKLEEN-KIYRTQH--DG--NFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELS  438 (1075)
Q Consensus       364 G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~--~g--~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~  438 (1075)
                      |+.++|.|.+.|.|++.++|+|++..+..+ .++.+..  .+  ..+.|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            789999999999999999999999988654 3555442  22  236799999999999999999999999999999999


Q ss_pred             eecCCC
Q psy16863        439 VLVPKA  444 (1075)
Q Consensus       439 V~~~~~  444 (1075)
                      |..+|.
T Consensus        81 V~~~P~   86 (88)
T cd05735          81 VQEPPD   86 (88)
T ss_pred             EeCCCC
Confidence            987653

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.39  E-value=3e-12  Score=104.29  Aligned_cols=71  Identities=20%  Similarity=0.421  Sum_probs=62.4

Q ss_pred             eEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863        366 RARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV  439 (1075)
Q Consensus       366 ~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V  439 (1075)
                      .++|.|.+.|.|.|.++|+|+|..+..+.++.+..++.   |.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~---l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHN---LQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCC---EEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            47899999999999999999999998777777766665   567799999999999999999999998888765

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.38  E-value=3.5e-12  Score=111.85  Aligned_cols=90  Identities=24%  Similarity=0.336  Sum_probs=74.1

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCC-----CcEEEEEcCCEEEEEEcccCCCCceeEEEE
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN-----KIYRTQHDGNFYFIDLSSVSLFDSGRWTCL  423 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-----~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~  423 (1075)
                      +|.|. .+.+..+.+|+++.|.|.+.|.|.+.|.|+|++..+...     .++.+........|.|.+++.+|+|.|+|.
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   80 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE   80 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence            46664 566788999999999999999999999999999776543     244444445567899999999999999999


Q ss_pred             EEeCCCceeeEEEEEe
Q psy16863        424 AENAVGRSHCSCELSV  439 (1075)
Q Consensus       424 a~n~~g~~~~s~~l~V  439 (1075)
                      |.|..|....++.|.|
T Consensus        81 a~N~~G~~~~s~~l~v   96 (96)
T cd05732          81 ASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EEeCCCCcEEEEEEeC
Confidence            9999999988877764

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.38  E-value=3.7e-12  Score=106.14  Aligned_cols=76  Identities=17%  Similarity=0.212  Sum_probs=67.1

Q ss_pred             CCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863        364 GTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV  439 (1075)
Q Consensus       364 G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V  439 (1075)
                      |+++.|.|.+.|.|.|.|+|+|++..+....++.+...+....|.|.++..+|+|.|+|.|.|..|.....+.+.+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~   76 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL   76 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence            7899999999999999999999999988777777777777778999999999999999999999998876655544

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.38  E-value=3.3e-12  Score=109.65  Aligned_cols=88  Identities=17%  Similarity=0.255  Sum_probs=73.1

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCC
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAV  428 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~  428 (1075)
                      ||.+...+.+..+.+|+.+.|.|.+.|.|.+.++|+|++..+.......  ..+  ..|.|.+++.+|+|.|+|.|.|..
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~--~~~--~~L~i~~v~~~D~G~Y~C~a~N~~   76 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS--MSG--AVLKIPNIQFEDEGTYECEAENIK   76 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE--EeC--CEEEECCCCcccCEEEEEEEEECC
Confidence            4556667788889999999999999999999999999988776554432  222  359999999999999999999999


Q ss_pred             CceeeEEEEEee
Q psy16863        429 GRSHCSCELSVL  440 (1075)
Q Consensus       429 g~~~~s~~l~V~  440 (1075)
                      |....++.|.|.
T Consensus        77 G~~~~~~~l~V~   88 (88)
T cd04968          77 GKDTHQGRIYVQ   88 (88)
T ss_pred             CcEEEEEEEEEC
Confidence            999888888763

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.38  E-value=4.2e-12  Score=104.45  Aligned_cols=73  Identities=22%  Similarity=0.310  Sum_probs=62.3

Q ss_pred             EEEEEEEecCCCcEEEEEECCEecCC-CCcEEEEEc-CCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863        367 ARLLVEIRSPTEIKIHWYRNDRKLEE-NKIYRTQHD-GNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV  439 (1075)
Q Consensus       367 v~l~C~~~g~p~~~v~W~k~g~~l~~-~~~~~~~~~-g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V  439 (1075)
                      ++|.|.+.|.|.|.|.|+|+|..+.. ..++.+..+ .....|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            47999999999999999999999974 456665544 34557999999999999999999999999988888765

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.38  E-value=2.1e-12  Score=107.74  Aligned_cols=78  Identities=15%  Similarity=0.298  Sum_probs=65.1

Q ss_pred             ceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEE
Q psy16863        756 KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSC  835 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~  835 (1075)
                      ++..+.+|+.+.|.|.+.+. .+.+.|+|||.+|..+.++.+.  .   ..|.|.+++.+|+|.|+|.|.|..|.+...+
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~--~---~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~   75 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT--G---EEVQIKDAVPRDSGLYACVTSSPSGSDTTYF   75 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe--C---CEEEECCCChhhCEEEEEEEeCCCCcccEEE
Confidence            34568899999999999986 5789999999999877776653  1   2799999999999999999999999976666


Q ss_pred             EEEE
Q psy16863        836 FLKL  839 (1075)
Q Consensus       836 ~l~V  839 (1075)
                      .|.|
T Consensus        76 ~v~V   79 (79)
T cd04973          76 SVNV   79 (79)
T ss_pred             EEeC
Confidence            5543

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.37  E-value=5.4e-12  Score=110.59  Aligned_cols=89  Identities=16%  Similarity=0.272  Sum_probs=71.3

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCC-eEEEEECCEEeecC--CcEEEEEee---CcEEEEEEccccC-CCCeEE
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEP-KVSWFRDDQQVVES--DNVKILKET---LGVCHLKIHALEV-ADQAEW  820 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p-~v~W~k~g~~i~~~--~~~~~~~~~---~~~~~L~I~~~~~-~D~G~Y  820 (1075)
                      ||.+.. .....+..|+.+.|.|.+.|.|.| .|.|++++.++...  .++.+....   .....|.|.+++. +|.|.|
T Consensus         2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y   80 (98)
T cd05758           2 PPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY   80 (98)
T ss_pred             CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence            565543 456778999999999999999999 69999999988754  466665432   2245899999998 559999


Q ss_pred             EEEEEeCCceEEEEEEE
Q psy16863        821 KCIATNDFGQSITSCFL  837 (1075)
Q Consensus       821 ~C~A~N~~G~~~~s~~l  837 (1075)
                      +|.|.|.+|.+...+.|
T Consensus        81 ~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          81 NCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEEcCCCcccEEEEe
Confidence            99999999998877665

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.37  E-value=2.7e-12  Score=110.44  Aligned_cols=77  Identities=22%  Similarity=0.444  Sum_probs=60.4

Q ss_pred             CCeEEEEEEEecCCCCeEEEEEC----CEEeecCCc--EEEEEe------eCcEEEEEEccccCCCCeEEEEEEEeCCce
Q psy16863        763 NEEFKFTVQVSISPEPKVSWFRD----DQQVVESDN--VKILKE------TLGVCHLKIHALEVADQAEWKCIATNDFGQ  830 (1075)
Q Consensus       763 g~~~~l~C~v~g~p~p~v~W~k~----g~~i~~~~~--~~~~~~------~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~  830 (1075)
                      |+.++|.|.+.|.|.|.|+|+|+    |..+.....  ..+...      ......|.|.+++.+|+|.|+|.|.|.+|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            67899999999999999999994    555543322  111111      112358999999999999999999999999


Q ss_pred             EEEEEEEEE
Q psy16863        831 SITSCFLKL  839 (1075)
Q Consensus       831 ~~~s~~l~V  839 (1075)
                      +..++.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            999999887

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.37  E-value=2.3e-12  Score=110.63  Aligned_cols=77  Identities=22%  Similarity=0.433  Sum_probs=59.1

Q ss_pred             CCeEEEEEEEecCCCCeEEEEECC----EEeecCC--cEEEEEe------eCcEEEEEEccccCCCCeEEEEEEEeCCce
Q psy16863        763 NEEFKFTVQVSISPEPKVSWFRDD----QQVVESD--NVKILKE------TLGVCHLKIHALEVADQAEWKCIATNDFGQ  830 (1075)
Q Consensus       763 g~~~~l~C~v~g~p~p~v~W~k~g----~~i~~~~--~~~~~~~------~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~  830 (1075)
                      |+.++|.|.+.|.|.|.|+|+|++    ..+....  .......      ......|.|.+++.+|+|.|+|.|.|.+|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            678999999999999999999964    3332221  1111111      012347999999999999999999999999


Q ss_pred             EEEEEEEEE
Q psy16863        831 SITSCFLKL  839 (1075)
Q Consensus       831 ~~~s~~l~V  839 (1075)
                      +.+++.|.|
T Consensus        81 ~~~sa~L~V   89 (90)
T cd04974          81 SHHSAWLTV   89 (90)
T ss_pred             ccCCEEEEe
Confidence            999999887

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.37  E-value=4.2e-12  Score=108.62  Aligned_cols=80  Identities=13%  Similarity=0.284  Sum_probs=65.1

Q ss_pred             cceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEE-
Q psy16863        755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT-  833 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~-  833 (1075)
                      ..++.+.+|++++|.|.+.|. .|.|.|+|+|.++... ++.+.. .  ...|.|.+++.+|+|.|+|.|.|.+|...+ 
T Consensus        10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~~-~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~   84 (91)
T cd05740          10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLSN-D--NRTLTFNNVTRSDTGHYQCEASNEVSNMTSD   84 (91)
T ss_pred             cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEeC-C--CCEEEECcCChhhCEEEEEEEEcCCCCEEee
Confidence            346778999999999999999 9999999999988653 444332 1  237999999999999999999999998655 


Q ss_pred             EEEEEE
Q psy16863        834 SCFLKL  839 (1075)
Q Consensus       834 s~~l~V  839 (1075)
                      .+.|.|
T Consensus        85 ~~~L~V   90 (91)
T cd05740          85 PYILNV   90 (91)
T ss_pred             eEEEEe
Confidence            555555

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.37  E-value=2e-12  Score=106.35  Aligned_cols=70  Identities=30%  Similarity=0.522  Sum_probs=57.5

Q ss_pred             EEEEEEEecCCCCeEEEEECCEEee--cCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceE-EEEEEEEE
Q psy16863        766 FKFTVQVSISPEPKVSWFRDDQQVV--ESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQS-ITSCFLKL  839 (1075)
Q Consensus       766 ~~l~C~v~g~p~p~v~W~k~g~~i~--~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~s~~l~V  839 (1075)
                      ++|.|.+.|.|.|.|+|+|++.++.  ...++...  ..+  .|.|.+++.+|+|.|+|.|.|.+|.. +.++.|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~--~~g--~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL--RSG--ALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc--CCc--EEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            4799999999999999999999987  34455442  223  69999999999999999999999985 45677665

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.37  E-value=4.3e-12  Score=102.11  Aligned_cols=63  Identities=35%  Similarity=0.615  Sum_probs=52.1

Q ss_pred             CCeEEEEEEEEccCCCeeEEEECCEEcCCCCee-----EEEECCCCceeeEEEEEEEEeCCeeEEEEEEE
Q psy16863        861 GGAVNLECKVIGVPQPTLKWFKDGRELKAGDIH-----KIISGEDGTCCLGIYTCEAHNCMGTTSSSAAL  925 (1075)
Q Consensus       861 g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~~-----~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l  925 (1075)
                      |++++|+|.+.|.|.|.|+|+|+|.++..+.+.     .|.+...  .|+|.|+|.|.|.+|..++++.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNI--YESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence            678999999999999999999999998654322     3444433  47999999999999999988876

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.37  E-value=7.8e-12  Score=107.69  Aligned_cols=84  Identities=19%  Similarity=0.397  Sum_probs=71.5

Q ss_pred             cCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEE-cCCEEEEEEcccCCCCceeEEEEEEeCCCceeeE
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQH-DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCS  434 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~-~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s  434 (1075)
                      +..+.+.+|+.+.|.|.+.|.|.+.+.|||+|..+....++.+.. ++....|.|.++..+|+|.|+|.|.|..|....+
T Consensus         8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   87 (92)
T cd05891           8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVD   87 (92)
T ss_pred             CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeE
Confidence            356788999999999999999999999999999988777665543 3445679999999999999999999999999877


Q ss_pred             EEEEe
Q psy16863        435 CELSV  439 (1075)
Q Consensus       435 ~~l~V  439 (1075)
                      ..|.|
T Consensus        88 ~~v~~   92 (92)
T cd05891          88 VTVSV   92 (92)
T ss_pred             EEEEC
Confidence            76654

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.36  E-value=2.4e-12  Score=104.57  Aligned_cols=69  Identities=28%  Similarity=0.476  Sum_probs=57.9

Q ss_pred             EEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863        766 FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL  839 (1075)
Q Consensus       766 ~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V  839 (1075)
                      +.|.|.+.|.|.|.+.|+|++..+.. .++.+.  .  ...|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~--~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPK-GRAEIL--D--DKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCC-CcEEEe--e--CCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            47999999999999999999887754 345443  2  237999999999999999999999999988887764

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.36  E-value=4.1e-12  Score=105.02  Aligned_cols=73  Identities=22%  Similarity=0.431  Sum_probs=60.3

Q ss_pred             CCeEEEEEEEecCCCCeEEEEE-CCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863        763 NEEFKFTVQVSISPEPKVSWFR-DDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL  839 (1075)
Q Consensus       763 g~~~~l~C~v~g~p~p~v~W~k-~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V  839 (1075)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+....++.+..  .  ..|.|.++..+|+|.|+|.|.|..|.++.++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~--~--~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYD--N--GTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEec--C--CEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            6889999999999999999997 677766555554432  2  26999999999999999999999999887777654

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.36  E-value=3.4e-12  Score=103.68  Aligned_cols=65  Identities=22%  Similarity=0.327  Sum_probs=55.6

Q ss_pred             EEEEEEEEccCCCeeEEEECCEEcCCCC-----eeEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEe
Q psy16863        864 VNLECKVIGVPQPTLKWFKDGRELKAGD-----IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGF  928 (1075)
Q Consensus       864 ~~L~C~v~g~p~p~v~W~k~g~~l~~~~-----~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~  928 (1075)
                      ++|.|.+.|.|.|.++|+|||.+|..+.     ...|.+......|+|.|+|.|.|.+|..+.+.++.++
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            4799999999999999999999997653     2456777778899999999999999998888877664

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.36  E-value=8.3e-12  Score=105.43  Aligned_cols=79  Identities=19%  Similarity=0.300  Sum_probs=64.2

Q ss_pred             CeEEEEEEEecCCCc--EEEEEECCEecCCC---CcEE-EEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEE
Q psy16863        365 TRARLLVEIRSPTEI--KIHWYRNDRKLEEN---KIYR-TQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELS  438 (1075)
Q Consensus       365 ~~v~l~C~~~g~p~~--~v~W~k~g~~l~~~---~~~~-~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~  438 (1075)
                      ++++|.|.+.|.|.+  .++|+|||..|...   .++. +........|.|.+++..|+|.|+|.|.|..|...+++.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            468999999999866  68999999988543   2332 22223345799999999999999999999999999999999


Q ss_pred             eecCC
Q psy16863        439 VLVPK  443 (1075)
Q Consensus       439 V~~~~  443 (1075)
                      |..+|
T Consensus        81 V~~~P   85 (85)
T cd05854          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            98754

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.36  E-value=7.5e-12  Score=111.14  Aligned_cols=91  Identities=23%  Similarity=0.437  Sum_probs=71.9

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCC-----CCcEEEEEcCCEEEEEEc--ccCCCCceeEE
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEE-----NKIYRTQHDGNFYFIDLS--SVSLFDSGRWT  421 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~-----~~~~~~~~~g~~~~L~I~--~v~~~d~G~Y~  421 (1075)
                      ||.|...+.+..+.+|+++.|.|.+.|.|.|.|+|+|+|..+..     ..+.....++....+.+.  .+..+|+|.|+
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~   80 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV   80 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence            57888888999999999999999999999999999999998865     122333445555444443  34689999999


Q ss_pred             EEEEeCCCc-eeeEEEEEe
Q psy16863        422 CLAENAVGR-SHCSCELSV  439 (1075)
Q Consensus       422 C~a~n~~g~-~~~s~~l~V  439 (1075)
                      |.|+|..|. .+.++.|.|
T Consensus        81 C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          81 CVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEccccceecceEEEEe
Confidence            999999998 556666665

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.36  E-value=5.2e-12  Score=110.11  Aligned_cols=86  Identities=20%  Similarity=0.358  Sum_probs=64.4

Q ss_pred             EEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccc-----cCCCCeEEEEEEE
Q psy16863        751 FIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHAL-----EVADQAEWKCIAT  825 (1075)
Q Consensus       751 ~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~-----~~~D~G~Y~C~A~  825 (1075)
                      |+..+.+..+..|+++.|.|.+.|.|.|.|+|+|||..+.............+  .|.|.++     +.+|.|.|+|.|.
T Consensus         2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~D~G~Y~C~a~   79 (95)
T cd05722           2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG--SLLITSVVHSKHNKPDEGFYQCVAQ   79 (95)
T ss_pred             cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC--eEEEeeeeccCCCCCcCEEEEEEEE
Confidence            34455667788999999999999999999999999999875543212112223  4666666     6899999999999


Q ss_pred             eC-CceEEE-EEEEE
Q psy16863        826 ND-FGQSIT-SCFLK  838 (1075)
Q Consensus       826 N~-~G~~~~-s~~l~  838 (1075)
                      |. .|...+ .+.|.
T Consensus        80 N~~~G~~~s~~~~l~   94 (95)
T cd05722          80 NDSLGSIVSRTARLT   94 (95)
T ss_pred             CCccCcEEEeeeEEe
Confidence            99 998743 45444

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.35  E-value=3.4e-12  Score=105.78  Aligned_cols=73  Identities=21%  Similarity=0.382  Sum_probs=59.1

Q ss_pred             EeccceeeeecCCeEEEEEEEecCCCC-eEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCce
Q psy16863        752 IEGLKSCQATVNEEFKFTVQVSISPEP-KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQ  830 (1075)
Q Consensus       752 ~~~~~~~~~~~g~~~~l~C~v~g~p~p-~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~  830 (1075)
                      +..++++.+..|+++.|.|.+.|.|.| +|+|+|||.++...  +.     .....|.|.++  .|+|.|.|.|+|.+|.
T Consensus         2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~~-----~~~s~L~i~~~--~d~g~Y~C~A~N~~G~   72 (81)
T cd05749           2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--PA-----PSPSVLNVPGL--NETSKFSCEAHNAKGV   72 (81)
T ss_pred             cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--CC-----CCCCEEEEccc--cCCeEEEEEEEeccCc
Confidence            445567789999999999999999999 79999999998641  11     11237889887  5889999999999997


Q ss_pred             EEE
Q psy16863        831 SIT  833 (1075)
Q Consensus       831 ~~~  833 (1075)
                      ..+
T Consensus        73 ~~s   75 (81)
T cd05749          73 TTS   75 (81)
T ss_pred             EEe
Confidence            654

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.34  E-value=9.7e-12  Score=106.17  Aligned_cols=81  Identities=19%  Similarity=0.350  Sum_probs=67.2

Q ss_pred             eeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEE-EEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEE
Q psy16863        359 IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYR-TQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCEL  437 (1075)
Q Consensus       359 ~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~-~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l  437 (1075)
                      ..+.+|+.+.|.|.+.|.|.|.++|+|+|..+..+.+.. .........|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   83 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   83 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence            457899999999999999999999999999997664431 1222334568999999999999999999999999888877


Q ss_pred             Ee
Q psy16863        438 SV  439 (1075)
Q Consensus       438 ~V  439 (1075)
                      .|
T Consensus        84 ~v   85 (85)
T cd05857          84 DV   85 (85)
T ss_pred             EC
Confidence            65

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.34  E-value=4.1e-12  Score=101.96  Aligned_cols=69  Identities=19%  Similarity=0.350  Sum_probs=55.3

Q ss_pred             EEEEEEEecCCCCeEEEEECCEEeecC-CcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863        766 FKFTVQVSISPEPKVSWFRDDQQVVES-DNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL  839 (1075)
Q Consensus       766 ~~l~C~v~g~p~p~v~W~k~g~~i~~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V  839 (1075)
                      ++|+|.+.|.|.|+++|+|||.++..+ .++..   . + ..|.|.+++.+|+|.|+|.|+|..........+++
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~---~-~-~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~   70 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHV---D-G-YSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL   70 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEe---C-C-CEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence            479999999999999999999998765 33322   1 2 37999999999999999999999776665555544

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.34  E-value=5.7e-12  Score=103.59  Aligned_cols=73  Identities=25%  Similarity=0.442  Sum_probs=64.9

Q ss_pred             CCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863        364 GTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV  439 (1075)
Q Consensus       364 G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V  439 (1075)
                      |+.+.|.|.+.|.|.+.++|+|++..+....++.+..++   .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDG---SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCC---eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            788999999999999999999999999887777665544   4899999999999999999999999988887765

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.34  E-value=6.5e-12  Score=111.79  Aligned_cols=72  Identities=26%  Similarity=0.463  Sum_probs=59.2

Q ss_pred             CCCeEEEEEEEEccCCCeeEEEECCEEcCCC-Cee-------------EEEECCCC-ceeeEEEEEEEEeCCeeEEEEEE
Q psy16863        860 EGGAVNLECKVIGVPQPTLKWFKDGRELKAG-DIH-------------KIISGEDG-TCCLGIYTCEAHNCMGTTSSSAA  924 (1075)
Q Consensus       860 ~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~-~~~-------------~i~~~~~~-~~d~G~Y~C~a~N~~G~~~~~~~  924 (1075)
                      .|..++|.|.+.|.|.|.++|+|||..|... .++             .|.+.... ..|.|.|+|.|.|.+|.++.++.
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~  101 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ  101 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence            4679999999999999999999999998643 222             34444444 47999999999999999999999


Q ss_pred             EEEecCC
Q psy16863        925 LLGFEDK  931 (1075)
Q Consensus       925 l~v~~~~  931 (1075)
                      |.+.++|
T Consensus       102 L~~~~~p  108 (109)
T cd05773         102 LVSTSRP  108 (109)
T ss_pred             EEecCCC
Confidence            9987665

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.33  E-value=5.6e-12  Score=107.03  Aligned_cols=78  Identities=15%  Similarity=0.366  Sum_probs=64.1

Q ss_pred             eeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEE
Q psy16863        759 QATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK  838 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~  838 (1075)
                      .+..|+++.|.|.+.|.|.|.++|+|+|..+........   ......|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~   81 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGES---RKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD   81 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCcccee---cCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence            466799999999999999999999999998865443321   22346899999999999999999999999987776665


Q ss_pred             E
Q psy16863        839 L  839 (1075)
Q Consensus       839 V  839 (1075)
                      |
T Consensus        82 v   82 (82)
T cd05856          82 V   82 (82)
T ss_pred             C
Confidence            3

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.33  E-value=6.8e-12  Score=104.22  Aligned_cols=74  Identities=16%  Similarity=0.307  Sum_probs=61.8

Q ss_pred             EEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy16863        766 FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLN  840 (1075)
Q Consensus       766 ~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~  840 (1075)
                      +.|.|.+.|.|.|.+.|+|+++.+..+.+..+..... ...|.|.+++.+|.|.|+|.|.|..|.+..++.|.|+
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~-~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIAN-GSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCC-CCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            3699999999999999999999987654433332222 3479999999999999999999999999999988875

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.33  E-value=5.7e-12  Score=104.71  Aligned_cols=71  Identities=17%  Similarity=0.449  Sum_probs=58.1

Q ss_pred             EEEEEEEec-CCCCeEEEEECCEEeecCCcEEE--EEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEE
Q psy16863        766 FKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKI--LKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCF  836 (1075)
Q Consensus       766 ~~l~C~v~g-~p~p~v~W~k~g~~i~~~~~~~~--~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~  836 (1075)
                      +.|.|.+.| .|.|.++|+|+|+++..+.+...  .........|.|.+++.+|+|.|+|.|.|.+|.+..++.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            469999999 99999999999999976654331  222234578999999999999999999999999877654

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.32  E-value=9.3e-12  Score=106.68  Aligned_cols=79  Identities=29%  Similarity=0.430  Sum_probs=64.2

Q ss_pred             ceeeeecCCeEEEEEEE-ecCCCCeEEEEECCEEeec-CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEE
Q psy16863        756 KSCQATVNEEFKFTVQV-SISPEPKVSWFRDDQQVVE-SDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT  833 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v-~g~p~p~v~W~k~g~~i~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~  833 (1075)
                      .+..+.+|+++.|.|.+ .|.|.|.+.|+|+|.++.. ..++.+..  .  ..|.|.+++.+|+|.|+|.|.|..|...+
T Consensus         4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~--~--~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   79 (86)
T cd05724           4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD--D--GNLLIAEARKSDEGTYKCVATNMVGERES   79 (86)
T ss_pred             ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc--C--CEEEEeECCcccCEEEEEEEEeccCceee
Confidence            45678899999999998 7899999999999999876 34444432  2  37999999999999999999999998654


Q ss_pred             -EEEEE
Q psy16863        834 -SCFLK  838 (1075)
Q Consensus       834 -s~~l~  838 (1075)
                       .+.|.
T Consensus        80 ~~~~l~   85 (86)
T cd05724          80 AAARLS   85 (86)
T ss_pred             eeEEEE
Confidence             44443

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.32  E-value=9.5e-12  Score=103.36  Aligned_cols=79  Identities=15%  Similarity=0.294  Sum_probs=63.4

Q ss_pred             CeEEEEEEEec--CCCcEEEEEECCEecCC---CCcEEEEEc-CCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEE
Q psy16863        365 TRARLLVEIRS--PTEIKIHWYRNDRKLEE---NKIYRTQHD-GNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELS  438 (1075)
Q Consensus       365 ~~v~l~C~~~g--~p~~~v~W~k~g~~l~~---~~~~~~~~~-g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~  438 (1075)
                      +++.|.|.+.+  .+++.|.|+|||++|..   +.++..... .....|.|.+++..|+|.|+|.|+|..+....++.|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            46899999976  44889999999999962   234433211 1223599999999999999999999999999999999


Q ss_pred             eecCC
Q psy16863        439 VLVPK  443 (1075)
Q Consensus       439 V~~~~  443 (1075)
                      |.+||
T Consensus        81 V~~pP   85 (85)
T cd05853          81 VRGPP   85 (85)
T ss_pred             EecCC
Confidence            99875

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.31  E-value=5.1e-12  Score=103.68  Aligned_cols=70  Identities=20%  Similarity=0.355  Sum_probs=57.7

Q ss_pred             EEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863        766 FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL  839 (1075)
Q Consensus       766 ~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V  839 (1075)
                      +.|.|.+.|.|.|.++|+|++.++... +....   .....|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~---~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPAD-RTKFE---NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCC-ceeEe---cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            479999999999999999999887543 22221   12347999999999999999999999999888887766

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.31  E-value=1.2e-11  Score=103.10  Aligned_cols=78  Identities=21%  Similarity=0.379  Sum_probs=65.4

Q ss_pred             CceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEE
Q psy16863        357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCE  436 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~  436 (1075)
                      .+..+.+|+.+.|.|.+.+. .+.|.|+|||.+|..+.++.+.  +.  .|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~--~~--~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~   76 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT--GE--EVQIKDAVPRDSGLYACVTSSPSGSDTTYFS   76 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe--CC--EEEECCCChhhCEEEEEEEeCCCCcccEEEE
Confidence            45678899999999999886 5789999999999877776553  32  5899999999999999999999998776666


Q ss_pred             EEe
Q psy16863        437 LSV  439 (1075)
Q Consensus       437 l~V  439 (1075)
                      |+|
T Consensus        77 v~V   79 (79)
T cd04973          77 VNV   79 (79)
T ss_pred             EeC
Confidence            554

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.31  E-value=1.3e-11  Score=100.90  Aligned_cols=70  Identities=14%  Similarity=0.311  Sum_probs=57.6

Q ss_pred             EEEEEecCCCcEEEEEECCEecCCCCcEEEE--E-c--CCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEE
Q psy16863        369 LLVEIRSPTEIKIHWYRNDRKLEENKIYRTQ--H-D--GNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELS  438 (1075)
Q Consensus       369 l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~--~-~--g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~  438 (1075)
                      |.|.+.|.|.|+|+|||||.+|..+.+....  . .  .....|.|.++..+|+|.|+|.|+|..|....++.+.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            7899999999999999999999877654321  1 1  2345799999999999999999999999988776654

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.30  E-value=8.8e-12  Score=100.97  Aligned_cols=68  Identities=22%  Similarity=0.532  Sum_probs=59.6

Q ss_pred             EEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEE
Q psy16863        367 ARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCEL  437 (1075)
Q Consensus       367 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l  437 (1075)
                      +.|.|.+.|.|.|.|+|+|+|..+..+.++.+..++   .|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~---~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEG---YLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCC---EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            479999999999999999999999877776665443   59999999999999999999999998877765

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.30  E-value=2e-11  Score=101.57  Aligned_cols=71  Identities=20%  Similarity=0.339  Sum_probs=58.1

Q ss_pred             EEEEEEecCCCcEEEEEECCEecCCCCcEEEEE-------cCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEE
Q psy16863        368 RLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQH-------DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELS  438 (1075)
Q Consensus       368 ~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~-------~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~  438 (1075)
                      .|.|.+.|.|.|.|+|||||++|..+.++....       ......|.|.+++.+|+|.|+|.|+|..|....+..+.
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            368999999999999999999998776543321       12345799999999999999999999999988776654

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.29  E-value=3e-11  Score=104.42  Aligned_cols=81  Identities=27%  Similarity=0.430  Sum_probs=63.3

Q ss_pred             CeeeeecCceeec---cCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccC-CCCceeEEEEEE
Q psy16863        350 PAFIRRLHDIAVK---VGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVS-LFDSGRWTCLAE  425 (1075)
Q Consensus       350 p~~~~~~~~~~v~---~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~-~~d~G~Y~C~a~  425 (1075)
                      |.|+..+.++.+.   +|+.++|.|.+.|.|.|.|+|+|||..|...........+.  .|.|.++. .+|+|.|+|.|.
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g--~L~i~~~~~~~D~G~Y~C~A~   79 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDG--NLIISNPSEVKDSGRYQCLAT   79 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCC--eEEEccCCccCcCEEEEEEEE
Confidence            6677777776654   47899999999999999999999999996544333332222  47788874 699999999999


Q ss_pred             eCCCcee
Q psy16863        426 NAVGRSH  432 (1075)
Q Consensus       426 n~~g~~~  432 (1075)
                      |..|...
T Consensus        80 N~~G~~~   86 (94)
T cd05848          80 NSIGSIL   86 (94)
T ss_pred             cCCCeEE
Confidence            9999874

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.29  E-value=1.4e-11  Score=102.69  Aligned_cols=74  Identities=28%  Similarity=0.303  Sum_probs=62.2

Q ss_pred             CCeEEEEEEEecCCCcEEEEEECCEecCCCCcE-EEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863        364 GTRARLLVEIRSPTEIKIHWYRNDRKLEENKIY-RTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV  439 (1075)
Q Consensus       364 G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~-~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V  439 (1075)
                      |+.++|.|.+.|.|.|.|.|+++|..+...... .....+  ..|.|.+++.+|+|.|+|.|.|..|...+++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~--~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDG--GTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccC--CEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            789999999999999999999999988765432 222222  35899999999999999999999999998888876

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.29  E-value=1.5e-11  Score=101.96  Aligned_cols=63  Identities=27%  Similarity=0.550  Sum_probs=51.1

Q ss_pred             eecCCCeEEEEEEEEccCCC-eeEEEECCEEcCC---CCeeEEEECCCCceeeEEEEEEEEeCCeeEEE
Q psy16863        857 VLSEGGAVNLECKVIGVPQP-TLKWFKDGRELKA---GDIHKIISGEDGTCCLGIYTCEAHNCMGTTSS  921 (1075)
Q Consensus       857 ~~~~g~~~~L~C~v~g~p~p-~v~W~k~g~~l~~---~~~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~  921 (1075)
                      .+.+|+.+.|.|.+.|.|.| +|+|+|||.++..   .....|.+..  ..|.|.|.|.|+|.+|...+
T Consensus         9 ~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~~~~~s~L~i~~--~~d~g~Y~C~A~N~~G~~~s   75 (81)
T cd05749           9 SVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPPAPSPSVLNVPG--LNETSKFSCEAHNAKGVTTS   75 (81)
T ss_pred             EEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCCCCCCCEEEEcc--ccCCeEEEEEEEeccCcEEe
Confidence            47799999999999999999 7999999999864   2233444433  35789999999999997765

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.29  E-value=1.3e-11  Score=104.38  Aligned_cols=77  Identities=19%  Similarity=0.309  Sum_probs=57.3

Q ss_pred             CCeEEEEEEEecCCCCeEEEEECCE---Ee-ecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEE
Q psy16863        763 NEEFKFTVQVSISPEPKVSWFRDDQ---QV-VESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK  838 (1075)
Q Consensus       763 g~~~~l~C~v~g~p~p~v~W~k~g~---~i-~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~  838 (1075)
                      |+.+.|.|.+.|.|.|.++|+|++.   .+ .....+...........|.|.+++.+|+|.|+|.|.|.+|.+..++.|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS   80 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence            6889999999999999999999742   11 1111110000111235899999999999999999999999998888876


Q ss_pred             E
Q psy16863        839 L  839 (1075)
Q Consensus       839 V  839 (1075)
                      |
T Consensus        81 v   81 (81)
T cd05765          81 V   81 (81)
T ss_pred             C
Confidence            5

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.27  E-value=3.4e-11  Score=103.91  Aligned_cols=82  Identities=18%  Similarity=0.349  Sum_probs=61.9

Q ss_pred             CeEEeccceeeeec---CCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEcccc-CCCCeEEEEEE
Q psy16863        749 PKFIEGLKSCQATV---NEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALE-VADQAEWKCIA  824 (1075)
Q Consensus       749 p~~~~~~~~~~~~~---g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~A  824 (1075)
                      |.|+..+.+..+..   |+.+.|.|.+.|.|.|.|+|+|++..+.......+... .+  .|.|.++. .+|+|.|+|.|
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~-~~--~L~i~~~~~~~d~G~Y~C~a   78 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV-GG--NLVISNPSKAKDAGRYQCLA   78 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEE-CC--EEEEecCCccCCCEEEEEEE
Confidence            56666666655443   46799999999999999999999998854332222222 22  68898887 59999999999


Q ss_pred             EeCCceEEE
Q psy16863        825 TNDFGQSIT  833 (1075)
Q Consensus       825 ~N~~G~~~~  833 (1075)
                      +|.+|.+.+
T Consensus        79 ~N~~G~~~S   87 (91)
T cd04967          79 SNIVGTVLS   87 (91)
T ss_pred             EcCCCEEEe
Confidence            999998754

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.26  E-value=3e-11  Score=100.17  Aligned_cols=73  Identities=23%  Similarity=0.388  Sum_probs=58.3

Q ss_pred             EEEEEEEecCCCcEEEEEECCEecCCCC-cEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeec
Q psy16863        367 ARLLVEIRSPTEIKIHWYRNDRKLEENK-IYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV  441 (1075)
Q Consensus       367 v~l~C~~~g~p~~~v~W~k~g~~l~~~~-~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~  441 (1075)
                      ++|.|.+.|.|.|.|+|+|+|.++.... ++.+...+  ..|.|.++..+|+|.|+|.|.|..|....+..++|.+
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v   74 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKE--RTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI   74 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCC--CEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence            5799999999999999999999987654 33333322  3689999999999999999999999876555555543

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.25  E-value=6.7e-11  Score=101.68  Aligned_cols=80  Identities=19%  Similarity=0.352  Sum_probs=62.7

Q ss_pred             CCeeeeecCceeeccC---CeEEEEEEEecCCCcEEEEEECCEecCC-CCcEEEEEcCCEEEEEEcccC-CCCceeEEEE
Q psy16863        349 APAFIRRLHDIAVKVG---TRARLLVEIRSPTEIKIHWYRNDRKLEE-NKIYRTQHDGNFYFIDLSSVS-LFDSGRWTCL  423 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G---~~v~l~C~~~g~p~~~v~W~k~g~~l~~-~~~~~~~~~g~~~~L~I~~v~-~~d~G~Y~C~  423 (1075)
                      .|.|...+.+..+.++   ..+.|.|.+.|.|.|.|+|+|++..+.. ..++.+ .++   .|.|.++. .+|+|.|+|.
T Consensus         1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~-~~g---~L~I~~~~~~~D~G~Y~C~   76 (93)
T cd05849           1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSM-VGG---NLVINNPDKYKDAGRYVCI   76 (93)
T ss_pred             CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEE-ECC---EEEECcCCcCCCCEEEEEE
Confidence            3667777777666554   4899999999999999999999998854 344433 233   48888885 6899999999


Q ss_pred             EEeCCCcee
Q psy16863        424 AENAVGRSH  432 (1075)
Q Consensus       424 a~n~~g~~~  432 (1075)
                      |+|..|...
T Consensus        77 A~N~~G~~~   85 (93)
T cd05849          77 VSNIYGKVR   85 (93)
T ss_pred             EEeCcceEE
Confidence            999999874

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.25  E-value=9.9e-11  Score=101.28  Aligned_cols=79  Identities=20%  Similarity=0.347  Sum_probs=62.5

Q ss_pred             CeeeeecCceeeccC---CeEEEEEEEecCCCcEEEEEECCEecCCC--CcEEEEEcCCEEEEEEcccC-CCCceeEEEE
Q psy16863        350 PAFIRRLHDIAVKVG---TRARLLVEIRSPTEIKIHWYRNDRKLEEN--KIYRTQHDGNFYFIDLSSVS-LFDSGRWTCL  423 (1075)
Q Consensus       350 p~~~~~~~~~~v~~G---~~v~l~C~~~g~p~~~v~W~k~g~~l~~~--~~~~~~~~g~~~~L~I~~v~-~~d~G~Y~C~  423 (1075)
                      |.|...+.++.+.+|   +.++|.|.+.|.|.+.|+|+|||..+...  .++.+. ++   .|.|.++. ..|+|.|+|.
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~g---~L~I~~~~~~~D~G~Y~C~   77 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV-AG---NLVINNPQKARDAGSYQCL   77 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE-CC---eEEEccCCccCcCEEEEEE
Confidence            667777777777665   58999999999999999999999998643  333332 33   37787755 5999999999


Q ss_pred             EEeCCCcee
Q psy16863        424 AENAVGRSH  432 (1075)
Q Consensus       424 a~n~~g~~~  432 (1075)
                      |+|..|...
T Consensus        78 A~N~~G~~~   86 (94)
T cd05850          78 AINRCGTVV   86 (94)
T ss_pred             EEcCcCcEE
Confidence            999999875

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.25  E-value=2.3e-11  Score=104.59  Aligned_cols=80  Identities=14%  Similarity=0.212  Sum_probs=63.9

Q ss_pred             eeeeecCCeEEEEEEEec-----CCCCeEEEEECCEEeecC--CcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCc
Q psy16863        757 SCQATVNEEFKFTVQVSI-----SPEPKVSWFRDDQQVVES--DNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFG  829 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~g-----~p~p~v~W~k~g~~i~~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G  829 (1075)
                      ...+.+|+++.|.|.+.|     .|.|.|+|||+|.++...  ...++... .  ..|.|.++..+|+|.|+|.|+|..|
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~-~--~~L~I~~~~~~DsG~Y~C~~~N~~g   84 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQ-K--DLLWFLPAALEDSGLYTCVVRNSTY   84 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeec-C--CeEEEccCCcccCeEEEEEEcCCCc
Confidence            456779999999999999     689999999999765321  22222222 2  3799999999999999999999999


Q ss_pred             eEEEEEEEEE
Q psy16863        830 QSITSCFLKL  839 (1075)
Q Consensus       830 ~~~~s~~l~V  839 (1075)
                      ..+.++.|.|
T Consensus        85 ~~~~~~~L~v   94 (94)
T cd05756          85 CMKVSISLTV   94 (94)
T ss_pred             cEEEEEEEEC
Confidence            9988887764

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.25  E-value=8.1e-11  Score=103.12  Aligned_cols=88  Identities=20%  Similarity=0.276  Sum_probs=71.0

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCc-EEEEEECCEecCCC--CcEEEEEc----CCEEEEEEcccCC-CCceeE
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEI-KIHWYRNDRKLEEN--KIYRTQHD----GNFYFIDLSSVSL-FDSGRW  420 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~v~W~k~g~~l~~~--~~~~~~~~----g~~~~L~I~~v~~-~d~G~Y  420 (1075)
                      ||.+. .+....+.+|+.+.|.|.+.|.|.| .|.|++++..+...  .++.+...    +....|.|.++.. +|.|.|
T Consensus         2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y   80 (98)
T cd05758           2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY   80 (98)
T ss_pred             CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence            55554 4567788999999999999999988 69999999988653  46666543    3446899999999 459999


Q ss_pred             EEEEEeCCCceeeEEEE
Q psy16863        421 TCLAENAVGRSHCSCEL  437 (1075)
Q Consensus       421 ~C~a~n~~g~~~~s~~l  437 (1075)
                      +|.|.|..|.....+.|
T Consensus        81 ~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          81 NCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEEcCCCcccEEEEe
Confidence            99999999998877655

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.25  E-value=5.1e-11  Score=101.35  Aligned_cols=79  Identities=20%  Similarity=0.293  Sum_probs=62.7

Q ss_pred             CeEEEEEEEecCCCc--EEEEEECCEecCCCC---cEE-EEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEE
Q psy16863        365 TRARLLVEIRSPTEI--KIHWYRNDRKLEENK---IYR-TQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELS  438 (1075)
Q Consensus       365 ~~v~l~C~~~g~p~~--~v~W~k~g~~l~~~~---~~~-~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~  438 (1075)
                      ++++|.|.+.|.|.+  .+.|+|||..|....   ++. .........|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            468999999998866  779999999885332   221 11222334699999999999999999999999999999999


Q ss_pred             eecCC
Q psy16863        439 VLVPK  443 (1075)
Q Consensus       439 V~~~~  443 (1075)
                      |..+|
T Consensus        81 V~~pP   85 (85)
T cd04970          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            98764

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.24  E-value=1e-10  Score=99.98  Aligned_cols=89  Identities=20%  Similarity=0.339  Sum_probs=71.3

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCC-eEEEEECCEEeecC--CcEEEEEee---CcEEEEEEccccCCC-CeEE
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEP-KVSWFRDDQQVVES--DNVKILKET---LGVCHLKIHALEVAD-QAEW  820 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p-~v~W~k~g~~i~~~--~~~~~~~~~---~~~~~L~I~~~~~~D-~G~Y  820 (1075)
                      ||.+ ...+...+..|+.++|.|.+.+.|+| .|.|..++..|..+  .+|.+....   ...+.|+|.++..+| .|.|
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y   80 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY   80 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence            5655 45566789999999999999888876 68999888887653  577776542   346789999998767 8999


Q ss_pred             EEEEEeCCceEEEEEEE
Q psy16863        821 KCIATNDFGQSITSCFL  837 (1075)
Q Consensus       821 ~C~A~N~~G~~~~s~~l  837 (1075)
                      .|.|.|.+|.+...+.|
T Consensus        81 ~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          81 NCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEeCCccceEEEEe
Confidence            99999999998776655

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.24  E-value=9.6e-11  Score=100.89  Aligned_cols=83  Identities=20%  Similarity=0.355  Sum_probs=64.9

Q ss_pred             ecCceeeccCCeEEEEEEEecCCCcEEEEEE-CCEecCCCCcEEEEE-cCCEEEEEEcccCCCCceeEEEEEEeCCCc-e
Q psy16863        355 RLHDIAVKVGTRARLLVEIRSPTEIKIHWYR-NDRKLEENKIYRTQH-DGNFYFIDLSSVSLFDSGRWTCLAENAVGR-S  431 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k-~g~~l~~~~~~~~~~-~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~-~  431 (1075)
                      .+....+.+|+.+.|.|.+.|.| +.++|++ +|..+....++.+.. .+....|+|.+++.+|+|.|+|.|.|..|. .
T Consensus         6 ~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~   84 (92)
T cd04977           6 VPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTES   84 (92)
T ss_pred             ecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcc
Confidence            34567899999999999999986 4999998 676666555554443 345568999999999999999999998654 4


Q ss_pred             eeEEEEE
Q psy16863        432 HCSCELS  438 (1075)
Q Consensus       432 ~~s~~l~  438 (1075)
                      ..++.|.
T Consensus        85 ~~sv~l~   91 (92)
T cd04977          85 EATVNLK   91 (92)
T ss_pred             eeEEEEE
Confidence            5555554

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.24  E-value=4.3e-11  Score=103.01  Aligned_cols=78  Identities=18%  Similarity=0.288  Sum_probs=64.1

Q ss_pred             CCeEEEEEEEecCCCcEEEEEECCEec--------CCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEE
Q psy16863        364 GTRARLLVEIRSPTEIKIHWYRNDRKL--------EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC  435 (1075)
Q Consensus       364 G~~v~l~C~~~g~p~~~v~W~k~g~~l--------~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~  435 (1075)
                      |+.++|.|.+.|.|.|.+.|+|+|..+        ....++.+..++   .|.|.++..+|+|.|+|.|.|..|....++
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~---~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   77 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTG---DLTITNVQRSDVGYYICQTLNVAGSILTKA   77 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCC---eEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence            789999999999999999999998653        223455544333   499999999999999999999999999999


Q ss_pred             EEEeecCCC
Q psy16863        436 ELSVLVPKA  444 (1075)
Q Consensus       436 ~l~V~~~~~  444 (1075)
                      .|.|.....
T Consensus        78 ~l~V~~~~~   86 (90)
T cd05726          78 YLEVTDVIA   86 (90)
T ss_pred             EEEEeeccc
Confidence            999876543

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.24  E-value=6.7e-11  Score=101.19  Aligned_cols=79  Identities=20%  Similarity=0.270  Sum_probs=64.3

Q ss_pred             CceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCcee-eEE
Q psy16863        357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSH-CSC  435 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~-~s~  435 (1075)
                      .++.+.+|++++|.|.+.|. .+.|.|+|+|..+... ++.+..++.  .|.|.+++.+|+|.|+|.|.|..|... ..+
T Consensus        11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~   86 (91)
T cd05740          11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLSNDNR--TLTFNNVTRSDTGHYQCEASNEVSNMTSDPY   86 (91)
T ss_pred             CccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEeCCCC--EEEECcCChhhCEEEEEEEEcCCCCEEeeeE
Confidence            46789999999999999999 9999999999988654 444443333  599999999999999999999999754 345


Q ss_pred             EEEe
Q psy16863        436 ELSV  439 (1075)
Q Consensus       436 ~l~V  439 (1075)
                      .|.|
T Consensus        87 ~L~V   90 (91)
T cd05740          87 ILNV   90 (91)
T ss_pred             EEEe
Confidence            5544

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.23  E-value=2.8e-11  Score=100.37  Aligned_cols=65  Identities=22%  Similarity=0.439  Sum_probs=51.0

Q ss_pred             EEEEEEEecCCCCeEEEEECCEEeecCC--cEEEEEeeCcEEEEEEccccC----CCCeEEEEEEEeCCceEEE
Q psy16863        766 FKFTVQVSISPEPKVSWFRDDQQVVESD--NVKILKETLGVCHLKIHALEV----ADQAEWKCIATNDFGQSIT  833 (1075)
Q Consensus       766 ~~l~C~v~g~p~p~v~W~k~g~~i~~~~--~~~~~~~~~~~~~L~I~~~~~----~D~G~Y~C~A~N~~G~~~~  833 (1075)
                      +.|.|.+.|.|.|+|+|+|||.++....  ++.+. ..  ...|.|.++..    +|+|.|+|.|+|.+|.+.+
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~-~~--~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMK-PD--SGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEe-CC--CCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            4799999999999999999999986433  33332 22  23688888754    7999999999999998765

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.23  E-value=3.5e-11  Score=98.02  Aligned_cols=70  Identities=24%  Similarity=0.368  Sum_probs=57.5

Q ss_pred             EEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863        367 ARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV  439 (1075)
Q Consensus       367 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V  439 (1075)
                      +.|.|.+.|.|.|.|.|+|++..+..+.. .....  ...|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~-~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRT-KKLNN--NKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCce-eEEcC--CCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            47999999999999999999988765432 22222  236999999999999999999999999888877766

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.23  E-value=1.2e-10  Score=99.79  Aligned_cols=81  Identities=15%  Similarity=0.359  Sum_probs=66.7

Q ss_pred             eeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEE
Q psy16863        759 QATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK  838 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~  838 (1075)
                      .+..|+.+.|.|.+.+.|.+.+.|+|++..+.....+...........|.|.++..+|+|.|.|.|.|..|....++.|.
T Consensus         5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~   84 (85)
T cd05729           5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVD   84 (85)
T ss_pred             EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence            46689999999999999999999999999887655444332233456899999999999999999999999987777765


Q ss_pred             E
Q psy16863        839 L  839 (1075)
Q Consensus       839 V  839 (1075)
                      |
T Consensus        85 v   85 (85)
T cd05729          85 V   85 (85)
T ss_pred             C
Confidence            3

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.23  E-value=1.8e-10  Score=108.44  Aligned_cols=117  Identities=17%  Similarity=0.281  Sum_probs=86.1

Q ss_pred             EEEEcccCCCCCEEEEEEEEeCCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecC-CC-cEEEEEEC
Q psy16863        309 ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSP-TE-IKIHWYRN  386 (1075)
Q Consensus       309 ~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p~-~~v~W~k~  386 (1075)
                      +|+|.+++.+|+|.|.|.+.+..|.....+.|.|..    +|.+...+......+|+.++|.|.+.|. |. ++|+|+|+
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~----~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~   77 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE----PPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTRE   77 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec----CCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEEC
Confidence            699999999999999999999888888888999874    6776555555555588999999999884 53 59999999


Q ss_pred             CEecCC-----CC----cEEEEEcCCE---EEEEEcccCCCCceeEEEEEEeCCC
Q psy16863        387 DRKLEE-----NK----IYRTQHDGNF---YFIDLSSVSLFDSGRWTCLAENAVG  429 (1075)
Q Consensus       387 g~~l~~-----~~----~~~~~~~g~~---~~L~I~~v~~~d~G~Y~C~a~n~~g  429 (1075)
                      |.....     ..    ......+|..   +.|.|..-..++.+.|+|.+.|...
T Consensus        78 g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l  132 (139)
T cd05771          78 PPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL  132 (139)
T ss_pred             CCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence            864221     11    1222344544   3566665555556699999988754

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.22  E-value=6.1e-11  Score=98.47  Aligned_cols=74  Identities=22%  Similarity=0.262  Sum_probs=61.3

Q ss_pred             EEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEee
Q psy16863        367 ARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL  440 (1075)
Q Consensus       367 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~  440 (1075)
                      +.|.|.+.|.|.|.+.|+|++..+..+.+..+...+....|.|.++..+|.|.|+|.|.|..|....++.|.|.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            46999999999999999999999876543333333333468999999999999999999999999988888774

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.21  E-value=5.7e-11  Score=97.38  Aligned_cols=64  Identities=28%  Similarity=0.486  Sum_probs=54.4

Q ss_pred             EEEEEEEEccCCCeeEEEECCEEcCCCC------eeEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEE
Q psy16863        864 VNLECKVIGVPQPTLKWFKDGRELKAGD------IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLG  927 (1075)
Q Consensus       864 ~~L~C~v~g~p~p~v~W~k~g~~l~~~~------~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v  927 (1075)
                      +.|.|.+.|.|.|.++|+|++.++..+.      ...|.+......|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            4799999999999999999998875432      235677777788999999999999999998888876

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.21  E-value=6.3e-11  Score=97.86  Aligned_cols=66  Identities=18%  Similarity=0.377  Sum_probs=51.0

Q ss_pred             EEEEEEEecCCCCeEEEEECCEEee--cCCcEEEEEeeCcEEEEEEcccc----CCCCeEEEEEEEeCCceEEEE
Q psy16863        766 FKFTVQVSISPEPKVSWFRDDQQVV--ESDNVKILKETLGVCHLKIHALE----VADQAEWKCIATNDFGQSITS  834 (1075)
Q Consensus       766 ~~l~C~v~g~p~p~v~W~k~g~~i~--~~~~~~~~~~~~~~~~L~I~~~~----~~D~G~Y~C~A~N~~G~~~~s  834 (1075)
                      +.|.|.+.|.|.|.|+|+|+|.++.  .+.++.+.. ..  ..|.|..+.    .+|+|.|+|.|+|.+|.+.+.
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~-~~--~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRR-RS--GTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeC-CC--ceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            4699999999999999999999764  344554422 22  378888764    247999999999999987654

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.21  E-value=6.2e-11  Score=98.09  Aligned_cols=71  Identities=20%  Similarity=0.348  Sum_probs=57.3

Q ss_pred             EEEEEEEecCCCcEEEEEECCEecC---CCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863        367 ARLLVEIRSPTEIKIHWYRNDRKLE---ENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV  439 (1075)
Q Consensus       367 v~l~C~~~g~p~~~v~W~k~g~~l~---~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V  439 (1075)
                      ++|.|.+.|.|.|.|+|+|+|....   ...++.+...+.  .|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDD--VFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCC--EEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            4799999999999999999986432   223444433333  5899999999999999999999999988888877

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.21  E-value=4.2e-11  Score=102.84  Aligned_cols=77  Identities=30%  Similarity=0.459  Sum_probs=59.7

Q ss_pred             CCeEEEEEEEecCCCcEEEEEECC----EecCCC-Cc-EEEE-------EcCCEEEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863        364 GTRARLLVEIRSPTEIKIHWYRND----RKLEEN-KI-YRTQ-------HDGNFYFIDLSSVSLFDSGRWTCLAENAVGR  430 (1075)
Q Consensus       364 G~~v~l~C~~~g~p~~~v~W~k~g----~~l~~~-~~-~~~~-------~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~  430 (1075)
                      |+.++|.|.+.|.|.|.|+|+|++    ..+... .. ....       ..+....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            688999999999999999999964    333221 11 1111       1233457999999999999999999999999


Q ss_pred             eeeEEEEEee
Q psy16863        431 SHCSCELSVL  440 (1075)
Q Consensus       431 ~~~s~~l~V~  440 (1075)
                      ..+++.|.|.
T Consensus        81 ~~~sa~L~V~   90 (90)
T cd04974          81 SHHSAWLTVL   90 (90)
T ss_pred             ccCCEEEEeC
Confidence            9999998873

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.21  E-value=6.2e-11  Score=97.49  Aligned_cols=70  Identities=20%  Similarity=0.449  Sum_probs=57.4

Q ss_pred             EEEEEEEecCCCcEEEEEECCEecC--CCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCce-eeEEEEEe
Q psy16863        367 ARLLVEIRSPTEIKIHWYRNDRKLE--ENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS-HCSCELSV  439 (1075)
Q Consensus       367 v~l~C~~~g~p~~~v~W~k~g~~l~--~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~-~~s~~l~V  439 (1075)
                      ++|.|.+.|.|.|.|+|||++.++.  .+.++....++   .|.|.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g---~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSG---ALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCc---EEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            4799999999999999999999887  34555543333   48899999999999999999999985 56666665

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.20  E-value=5.7e-11  Score=98.13  Aligned_cols=66  Identities=21%  Similarity=0.417  Sum_probs=50.0

Q ss_pred             EEEEEEEecCCCCeEEEEECCEEeecCC--cEEEEEeeCcEEEEEEccccC----CCCeEEEEEEEeCCceEEEE
Q psy16863        766 FKFTVQVSISPEPKVSWFRDDQQVVESD--NVKILKETLGVCHLKIHALEV----ADQAEWKCIATNDFGQSITS  834 (1075)
Q Consensus       766 ~~l~C~v~g~p~p~v~W~k~g~~i~~~~--~~~~~~~~~~~~~L~I~~~~~----~D~G~Y~C~A~N~~G~~~~s  834 (1075)
                      +.|.|.+.|.|.|+|+|+|+|.++....  ++.+. ...+  .|.|..+..    .|.|.|+|.|.|.+|.+.++
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~-~~~g--~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMK-PNTG--TLVINIMNGEKAEAYEGVYQCTARNERGAAVSN   72 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEe-CCCc--eEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence            4799999999999999999999874332  33322 2223  677777664    48899999999999987653

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.20  E-value=9.3e-11  Score=99.49  Aligned_cols=79  Identities=24%  Similarity=0.431  Sum_probs=64.2

Q ss_pred             eeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEE
Q psy16863        359 IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELS  438 (1075)
Q Consensus       359 ~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~  438 (1075)
                      +....|+++.|.|.+.|.|.+.+.|+|+|..+.......  .......|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~   81 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD   81 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence            346789999999999999999999999999886544322  223345799999999999999999999999887776665


Q ss_pred             e
Q psy16863        439 V  439 (1075)
Q Consensus       439 V  439 (1075)
                      |
T Consensus        82 v   82 (82)
T cd05856          82 V   82 (82)
T ss_pred             C
Confidence            4

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.20  E-value=9.7e-11  Score=96.73  Aligned_cols=73  Identities=29%  Similarity=0.545  Sum_probs=60.3

Q ss_pred             CCeEEEEEEEecCCCcEEEEEE-CCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863        364 GTRARLLVEIRSPTEIKIHWYR-NDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV  439 (1075)
Q Consensus       364 G~~v~l~C~~~g~p~~~v~W~k-~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V  439 (1075)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+....+.....++   .|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNG---TLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCC---EEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            7899999999999999999997 67766665555444443   4889999999999999999999999887776654

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.20  E-value=6.2e-11  Score=100.55  Aligned_cols=77  Identities=13%  Similarity=0.165  Sum_probs=60.1

Q ss_pred             CCeEEEEEEEecC--CCCeEEEEECCEEeecCC----cEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEE
Q psy16863        763 NEEFKFTVQVSIS--PEPKVSWFRDDQQVVESD----NVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCF  836 (1075)
Q Consensus       763 g~~~~l~C~v~g~--p~p~v~W~k~g~~i~~~~----~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~  836 (1075)
                      |+++.|.|.+.|.  |.|.++|+++++.+....    +..........+.|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            7899999999999  889999999887653221    1111111123568999999999999999999999999988888


Q ss_pred             EEE
Q psy16863        837 LKL  839 (1075)
Q Consensus       837 l~V  839 (1075)
                      |.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            766

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.20  E-value=7.1e-11  Score=95.85  Aligned_cols=69  Identities=26%  Similarity=0.429  Sum_probs=57.4

Q ss_pred             EEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863        367 ARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV  439 (1075)
Q Consensus       367 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V  439 (1075)
                      ++|.|.+.|.|.|.+.|+|++..+... ++....++   .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEILDDK---SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCC-cEEEeeCC---EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            479999999999999999998877543 44444332   5899999999999999999999999988877765

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.20  E-value=8.6e-11  Score=97.52  Aligned_cols=70  Identities=19%  Similarity=0.469  Sum_probs=54.9

Q ss_pred             EEEEEEEec-CCCCeEEEEECCEEeecCC----cEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEE
Q psy16863        766 FKFTVQVSI-SPEPKVSWFRDDQQVVESD----NVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCF  836 (1075)
Q Consensus       766 ~~l~C~v~g-~p~p~v~W~k~g~~i~~~~----~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~  836 (1075)
                      +.|+|.+.+ .|.+.++|||+|++|....    ++.+. .......|.|.+++.+|+|.|+|.|+|.+|....++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~-~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIR-KKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEE-eCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            469999875 6889999999999986432    23322 2234568999999999999999999999999877654

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.19  E-value=1e-10  Score=100.55  Aligned_cols=76  Identities=26%  Similarity=0.495  Sum_probs=60.0

Q ss_pred             CCeEEEEEEEecCCCcEEEEEEC----CEecCCCCc--EEEEEc-------CCEEEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863        364 GTRARLLVEIRSPTEIKIHWYRN----DRKLEENKI--YRTQHD-------GNFYFIDLSSVSLFDSGRWTCLAENAVGR  430 (1075)
Q Consensus       364 G~~v~l~C~~~g~p~~~v~W~k~----g~~l~~~~~--~~~~~~-------g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~  430 (1075)
                      |+.++|.|.+.|.|.|.|+|+|+    |..+.....  ......       +....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            78999999999999999999994    444443322  122111       22357999999999999999999999999


Q ss_pred             eeeEEEEEe
Q psy16863        431 SHCSCELSV  439 (1075)
Q Consensus       431 ~~~s~~l~V  439 (1075)
                      ...++.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            998988887

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.19  E-value=1.7e-10  Score=100.62  Aligned_cols=84  Identities=23%  Similarity=0.341  Sum_probs=64.3

Q ss_pred             eeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCc--EEEEEcCCEEEEEEccc-----CCCCceeEEEEE
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI--YRTQHDGNFYFIDLSSV-----SLFDSGRWTCLA  424 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~--~~~~~~g~~~~L~I~~v-----~~~d~G~Y~C~a  424 (1075)
                      |...|.+..+.+|+++.|.|.+.|.|.+.|+|+|||..+.....  +.+..++.   |.|.++     ..+|+|.|+|.|
T Consensus         2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~---l~i~~v~~~~~~~~D~G~Y~C~a   78 (95)
T cd05722           2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGS---LLITSVVHSKHNKPDEGFYQCVA   78 (95)
T ss_pred             cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCe---EEEeeeeccCCCCCcCEEEEEEE
Confidence            44566778888999999999999999999999999999875443  44444443   344444     689999999999


Q ss_pred             EeC-CCce-eeEEEEE
Q psy16863        425 ENA-VGRS-HCSCELS  438 (1075)
Q Consensus       425 ~n~-~g~~-~~s~~l~  438 (1075)
                      .|. .|.. +..+.|.
T Consensus        79 ~N~~~G~~~s~~~~l~   94 (95)
T cd05722          79 QNDSLGSIVSRTARLT   94 (95)
T ss_pred             ECCccCcEEEeeeEEe
Confidence            999 8876 3344443

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.18  E-value=1.1e-10  Score=93.63  Aligned_cols=69  Identities=17%  Similarity=0.242  Sum_probs=55.1

Q ss_pred             EEEEEEEecCCCcEEEEEECCEecCCC-CcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863        367 ARLLVEIRSPTEIKIHWYRNDRKLEEN-KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV  439 (1075)
Q Consensus       367 v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V  439 (1075)
                      ++|.|.+.|.|.|++.|+|||.++..+ .++  ..++.  .|.|.++..+|+|.|+|.|+|..........+++
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~--~~~~~--~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~   70 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRY--HVDGY--SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL   70 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEE--EeCCC--EEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence            479999999999999999999998765 333  23343  5999999999999999999998766555555444

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.18  E-value=1.5e-10  Score=100.00  Aligned_cols=84  Identities=10%  Similarity=0.298  Sum_probs=64.7

Q ss_pred             cceeeeecCCeEEEEEEEecCCCCeEEEEEC--------CEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRD--------DQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--------g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      ++++.+.+|+++.|+|.+.+.|.+.+.|+|.        +.....+.++.......+...|.|.+++.+|+|.|+|.+.+
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t   83 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT   83 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence            4567899999999999999999999999863        33233455776644434567899999999999999999998


Q ss_pred             CCceEEEEEEEEE
Q psy16863        827 DFGQSITSCFLKL  839 (1075)
Q Consensus       827 ~~G~~~~s~~l~V  839 (1075)
                      ..+. ..++.|.|
T Consensus        84 ~~~~-~~~~~l~v   95 (95)
T cd07701          84 MPVK-TSKAYLTV   95 (95)
T ss_pred             ecCc-cEEEEEEC
Confidence            5443 55666654

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.18  E-value=1.2e-10  Score=96.80  Aligned_cols=70  Identities=21%  Similarity=0.465  Sum_probs=58.0

Q ss_pred             EEEEEEEec-CCCcEEEEEECCEecCCCCcEE---EEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEE
Q psy16863        367 ARLLVEIRS-PTEIKIHWYRNDRKLEENKIYR---TQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCE  436 (1075)
Q Consensus       367 v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~~~---~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~  436 (1075)
                      +.|.|.+.| .|.+.++|+|+|.++....+..   +........|.|.++..+|+|.|+|.|.|..|....++.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            469999999 8999999999999997654432   444455678999999999999999999999998876654

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.16  E-value=8.4e-11  Score=98.37  Aligned_cols=69  Identities=19%  Similarity=0.318  Sum_probs=52.3

Q ss_pred             EEEEEEEecCCCCeEEEEECCEEee--------cCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceE-EEEEE
Q psy16863        766 FKFTVQVSISPEPKVSWFRDDQQVV--------ESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQS-ITSCF  836 (1075)
Q Consensus       766 ~~l~C~v~g~p~p~v~W~k~g~~i~--------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~s~~  836 (1075)
                      ++|.|.+.|.|.|.++|+|++....        ...++.+.  ..  ..|.|.+++.+|+|.|+|.|.|..|.+ ..++.
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~--~~--~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~   76 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL--SN--GSLLIKHVLEEDSGYYLCKVSNDVGADASKSMV   76 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe--cC--CeEEECcCCcccCEEEEEEEEeCCCCCCceEEE
Confidence            4799999999999999999743211        23344432  22  379999999999999999999999987 33555


Q ss_pred             EE
Q psy16863        837 LK  838 (1075)
Q Consensus       837 l~  838 (1075)
                      |.
T Consensus        77 l~   78 (79)
T cd05734          77 LT   78 (79)
T ss_pred             Ee
Confidence            54

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.14  E-value=1.3e-10  Score=95.76  Aligned_cols=66  Identities=17%  Similarity=0.262  Sum_probs=53.9

Q ss_pred             eEEeccceeeeecCCeEEEEEEEecCCC-CeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeC
Q psy16863        750 KFIEGLKSCQATVNEEFKFTVQVSISPE-PKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND  827 (1075)
Q Consensus       750 ~~~~~~~~~~~~~g~~~~l~C~v~g~p~-p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~  827 (1075)
                      .+...+....+.+|++++|+|.+.+.|. +.+.|+|||..|...           ...|.|.++ .+|+|.|+|.|.|.
T Consensus         2 vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~-----------~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           2 VVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETT-----------TNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             eEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeecc-----------CCeEEEeec-ccCCEEeEEECCCC
Confidence            3444556677899999999999999886 479999999987321           236999999 99999999999885

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.13  E-value=6e-10  Score=95.65  Aligned_cols=71  Identities=15%  Similarity=0.330  Sum_probs=58.5

Q ss_pred             ceeeeecCCeEEEEEEEecCCCCeEEEEECCEEe--------ecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        756 KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQV--------VESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i--------~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      +++.+.+|+++.|.|.+.+.|.|.|.|+|++..+        ..+.++.+.....+...|.|.+++.+|+|.|+|.|..
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence            4677999999999999999999999999987643        2345565544444467999999999999999999987

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.13  E-value=2.9e-10  Score=97.32  Aligned_cols=80  Identities=28%  Similarity=0.523  Sum_probs=64.1

Q ss_pred             ccceEeecCCeEEEEEEE-ecCCCCceEEEEeCCeEEec-CCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCce
Q psy16863        557 VENVKAKIGTSAILECQV-LVPPWPRSIYWYNKEGVVEA-SDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVK  634 (1075)
Q Consensus       557 ~~~~~v~~G~~~~L~C~~-~~~p~p~~v~W~~~~~~i~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  634 (1075)
                      +.+..+.+|+++.|.|.+ .+.|.| .+.|++++..+.. ..++.+..++    .|.|.+++.+|+|.|+|.|.|..|..
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g~p~p-~i~W~k~g~~~~~~~~~~~~~~~~----~L~I~~~~~~D~G~Y~C~a~N~~G~~   77 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRGHPEP-TVSWRKDGQPLNLDNERVRIVDDG----NLLIAEARKSDEGTYKCVATNMVGER   77 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCCCCCC-EEEEEECCEECCCCCCCEEEccCC----EEEEeECCcccCEEEEEEEEeccCce
Confidence            456778899999999998 678877 8999999988765 3444444322    79999999999999999999999987


Q ss_pred             eeeeEEE
Q psy16863        635 QFSAAYV  641 (1075)
Q Consensus       635 ~~~~~~l  641 (1075)
                      ....+.+
T Consensus        78 ~s~~~~l   84 (86)
T cd05724          78 ESAAARL   84 (86)
T ss_pred             eeeeEEE
Confidence            6554444

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.13  E-value=1.3e-10  Score=99.86  Aligned_cols=80  Identities=21%  Similarity=0.321  Sum_probs=63.4

Q ss_pred             ceeeccCCeEEEEEEEec-----CCCcEEEEEECCEecCCC--CcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863        358 DIAVKVGTRARLLVEIRS-----PTEIKIHWYRNDRKLEEN--KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGR  430 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~~g-----~p~~~v~W~k~g~~l~~~--~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~  430 (1075)
                      ...+.+|+++.|.|.+.+     .|.+.|.|||+|..+...  ...++...+.  .|.|.++..+|+|.|+|.+.|..|.
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~--~L~I~~~~~~DsG~Y~C~~~N~~g~   85 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKD--LLWFLPAALEDSGLYTCVVRNSTYC   85 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCC--eEEEccCCcccCeEEEEEEcCCCcc
Confidence            456778999999999988     688899999999765321  2223333332  5899999999999999999999999


Q ss_pred             eeeEEEEEe
Q psy16863        431 SHCSCELSV  439 (1075)
Q Consensus       431 ~~~s~~l~V  439 (1075)
                      .+.++.|+|
T Consensus        86 ~~~~~~L~v   94 (94)
T cd05756          86 MKVSISLTV   94 (94)
T ss_pred             EEEEEEEEC
Confidence            988887765

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.11  E-value=5.7e-10  Score=93.13  Aligned_cols=68  Identities=13%  Similarity=0.228  Sum_probs=56.2

Q ss_pred             cceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecC-CcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCC
Q psy16863        755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVES-DNVKILKETLGVCHLKIHALEVADQAEWKCIATNDF  828 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~  828 (1075)
                      +++..+..|+++.|.|.+. .|.|+|+|+|||.+|..+ .++.+.  + +  .|.|.+++.+|+|.|+|.|.+..
T Consensus         3 P~~~~v~~G~~v~L~C~~~-~~~~~i~W~~ng~~i~~~~~r~~~~--~-~--~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPK-SNLARVVWKFDGKVLTPESAKYLLY--R-D--GLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             cceEEEECCCCEEEEEECC-CCCCeEEEEECCEECCCCCceEEEE--C-C--cEEEeCCCHHHCEEEEEEEEecc
Confidence            4567789999999999986 478899999999999876 344432  2 2  59999999999999999999863

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.09  E-value=3.4e-10  Score=95.59  Aligned_cols=75  Identities=21%  Similarity=0.313  Sum_probs=56.4

Q ss_pred             CCeEEEEEEEecCCCcEEEEEECCE---e--cCCCCc-EEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEE
Q psy16863        364 GTRARLLVEIRSPTEIKIHWYRNDR---K--LEENKI-YRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCEL  437 (1075)
Q Consensus       364 G~~v~l~C~~~g~p~~~v~W~k~g~---~--l~~~~~-~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l  437 (1075)
                      |+.++|.|.+.|.|.|.++|||++.   .  +..... ..+.. .....|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   79 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVV-TNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPL   79 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEE-ccccEEEEccCCcccCEEEEEEEecCCceEEEEEEE
Confidence            7899999999999999999999742   1  111110 00111 122469999999999999999999999998888877


Q ss_pred             Ee
Q psy16863        438 SV  439 (1075)
Q Consensus       438 ~V  439 (1075)
                      .|
T Consensus        80 ~v   81 (81)
T cd05765          80 SV   81 (81)
T ss_pred             eC
Confidence            65

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.09  E-value=5.6e-10  Score=92.62  Aligned_cols=70  Identities=17%  Similarity=0.425  Sum_probs=56.2

Q ss_pred             EEEEEEEec-CCCcEEEEEECCEecCCC----CcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEE
Q psy16863        367 ARLLVEIRS-PTEIKIHWYRNDRKLEEN----KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCE  436 (1075)
Q Consensus       367 v~l~C~~~g-~p~~~v~W~k~g~~l~~~----~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~  436 (1075)
                      +.|.|.+.+ .|.+.++|||+|+.+...    .++.+...+....|.|.++..+|+|.|+|.|+|..|....++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            479999864 678899999999988532    2344444556678999999999999999999999998876654

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.09  E-value=4.2e-10  Score=95.94  Aligned_cols=78  Identities=13%  Similarity=0.130  Sum_probs=62.2

Q ss_pred             eeeecCCeEEEEEEEec-----CCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEE
Q psy16863        758 CQATVNEEFKFTVQVSI-----SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSI  832 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g-----~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~  832 (1075)
                      +.+.+|.+..|.|...+     +|.|.+.||||++++....+...   .  ...|.|.++..+|+|.|+|.|.|.+|...
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~---~--~~~L~I~~v~~~DsG~YtC~~~n~~~~~~   79 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV---K--GSKLLIQNVTEEDAGNYTCKLTFTHNGKQ   79 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe---c--CCEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence            45778999999998754     26789999999999986554332   2  23799999999999999999999999876


Q ss_pred             EEEEEEEE
Q psy16863        833 TSCFLKLN  840 (1075)
Q Consensus       833 ~s~~l~V~  840 (1075)
                      .++...+.
T Consensus        80 ~~~t~t~~   87 (92)
T cd05757          80 YNVTRTIS   87 (92)
T ss_pred             EEEEEEEE
Confidence            66555554

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.08  E-value=1.5e-09  Score=92.79  Aligned_cols=88  Identities=19%  Similarity=0.308  Sum_probs=71.1

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCC-cEEEEEECCEecCCC--CcEEEEE----cCCEEEEEEcccCCCC-ceeE
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTE-IKIHWYRNDRKLEEN--KIYRTQH----DGNFYFIDLSSVSLFD-SGRW  420 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~-~~v~W~k~g~~l~~~--~~~~~~~----~g~~~~L~I~~v~~~d-~G~Y  420 (1075)
                      ||.+ .....+.+.+|+.++|.|.+.+.|. ..|.|.+++..|..+  .++.+..    ++..+.|+|.++...| .|.|
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y   80 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY   80 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence            5555 5667788999999999999977665 578999998887653  5776654    3678899999998767 8999


Q ss_pred             EEEEEeCCCceeeEEEE
Q psy16863        421 TCLAENAVGRSHCSCEL  437 (1075)
Q Consensus       421 ~C~a~n~~g~~~~s~~l  437 (1075)
                      .|.|.|..|.....+.|
T Consensus        81 ~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          81 NCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEeCCccceEEEEe
Confidence            99999999998876655

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.08  E-value=8.8e-10  Score=92.93  Aligned_cols=77  Identities=16%  Similarity=0.211  Sum_probs=56.4

Q ss_pred             CCeEEEEEEEecCCCCeEEEEECCEEeecCC----cEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCc--eEEEEEE
Q psy16863        763 NEEFKFTVQVSISPEPKVSWFRDDQQVVESD----NVKILKETLGVCHLKIHALEVADQAEWKCIATNDFG--QSITSCF  836 (1075)
Q Consensus       763 g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~----~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G--~~~~s~~  836 (1075)
                      |++++|.|.+.|.|.+.+.|+++++......    +..+. .....+.|.|.+++.+|+|.|+|.|+|..+  ....++.
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~   79 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVP-ATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN   79 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecC-CcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence            7899999999999999999999876432111    11111 111256899999999999999999999877  4555555


Q ss_pred             EEEE
Q psy16863        837 LKLN  840 (1075)
Q Consensus       837 l~V~  840 (1075)
                      |+|.
T Consensus        80 i~V~   83 (84)
T cd05861          80 ITVH   83 (84)
T ss_pred             EEEe
Confidence            5553

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.08  E-value=9.7e-10  Score=94.80  Aligned_cols=81  Identities=25%  Similarity=0.371  Sum_probs=60.4

Q ss_pred             CeeeeecCceeecc---CCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccC-CCCceeEEEEEE
Q psy16863        350 PAFIRRLHDIAVKV---GTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVS-LFDSGRWTCLAE  425 (1075)
Q Consensus       350 p~~~~~~~~~~v~~---G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~-~~d~G~Y~C~a~  425 (1075)
                      |.|+..+.++.+.+   |+.+.|.|.+.|.|.+.|+|+|++..+...........+.  .|.|.++. .+|+|.|+|.|+
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~--~L~i~~~~~~~d~G~Y~C~a~   79 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGG--NLVISNPSKAKDAGRYQCLAS   79 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECC--EEEEecCCccCCCEEEEEEEE
Confidence            56777777766544   4679999999999999999999999884322222222222  47788776 489999999999


Q ss_pred             eCCCcee
Q psy16863        426 NAVGRSH  432 (1075)
Q Consensus       426 n~~g~~~  432 (1075)
                      |..|...
T Consensus        80 N~~G~~~   86 (91)
T cd04967          80 NIVGTVL   86 (91)
T ss_pred             cCCCEEE
Confidence            9999764

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.07  E-value=5.7e-10  Score=94.61  Aligned_cols=76  Identities=17%  Similarity=0.278  Sum_probs=60.1

Q ss_pred             CCeEEEEEEEecC--CCcEEEEEECCEecCCCCcE----E-EEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEE
Q psy16863        364 GTRARLLVEIRSP--TEIKIHWYRNDRKLEENKIY----R-TQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCE  436 (1075)
Q Consensus       364 G~~v~l~C~~~g~--p~~~v~W~k~g~~l~~~~~~----~-~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~  436 (1075)
                      |++++|.|.+.+.  |.+.|+|+++++.+......    . .........|.|.+++.+|+|.|+|.|+|..|....++.
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            7899999999998  88999999988765432111    1 111223468999999999999999999999999988888


Q ss_pred             EEe
Q psy16863        437 LSV  439 (1075)
Q Consensus       437 l~V  439 (1075)
                      |.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            776

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.07  E-value=3.9e-10  Score=93.50  Aligned_cols=64  Identities=16%  Similarity=0.285  Sum_probs=49.2

Q ss_pred             EEEEEEEecCCCcEEEEEECCEecCCC--CcEEEEEcCCEEEEEEcccC----CCCceeEEEEEEeCCCcee
Q psy16863        367 ARLLVEIRSPTEIKIHWYRNDRKLEEN--KIYRTQHDGNFYFIDLSSVS----LFDSGRWTCLAENAVGRSH  432 (1075)
Q Consensus       367 v~l~C~~~g~p~~~v~W~k~g~~l~~~--~~~~~~~~g~~~~L~I~~v~----~~d~G~Y~C~a~n~~g~~~  432 (1075)
                      ++|.|.+.|.|.|+|+|+|||..+...  .++.+....  ..|.|.++.    .+|+|.|+|.|.|..|...
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~--g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDS--GTLVIDNMNGGRAEDYEGEYQCYASNELGTAI   70 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCC--CEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence            479999999999999999999988643  334333322  246777764    3789999999999999764

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.07  E-value=5.6e-10  Score=95.00  Aligned_cols=76  Identities=16%  Similarity=0.290  Sum_probs=61.8

Q ss_pred             cceeeeecCCeEEEEEEEec-CCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEE
Q psy16863        755 LKSCQATVNEEFKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT  833 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g-~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~  833 (1075)
                      ++...+.+|++++|.|.+.+ .|.+.+.|+|++..+....    . ..  ...|.|.+++.+|+|.|+|.|.|.+|...+
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~----~-~~--~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~   80 (85)
T cd05754           8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA----M-DF--NGILTIRNVQLSDAGTYVCTGSNMLDTDEA   80 (85)
T ss_pred             CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc----c-cc--CCEEEECCCCHHHCEEEEEEEeccCCeEeE
Confidence            44566889999999999975 6889999999997654321    1 11  237999999999999999999999999988


Q ss_pred             EEEE
Q psy16863        834 SCFL  837 (1075)
Q Consensus       834 s~~l  837 (1075)
                      ++.|
T Consensus        81 ~~~l   84 (85)
T cd05754          81 TATL   84 (85)
T ss_pred             EEEE
Confidence            8766

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.06  E-value=5e-10  Score=92.30  Aligned_cols=66  Identities=18%  Similarity=0.259  Sum_probs=53.4

Q ss_pred             eeeeecCceeeccCCeEEEEEEEecCCC-cEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        351 AFIRRLHDIAVKVGTRARLLVEIRSPTE-IKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       351 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~-~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      .+...++...+.+|++++|.|.+.+.|. ..+.|||||..+..        ++  ..|.|.++ .+|+|.|+|+|.|.
T Consensus         2 vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~--------~~--~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           2 VVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET--------TT--NSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             eEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec--------cC--CeEEEeec-ccCCEEeEEECCCC
Confidence            4455667788999999999999988774 57999999998732        12  24788899 99999999999875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.05  E-value=8.7e-10  Score=91.08  Aligned_cols=65  Identities=14%  Similarity=0.237  Sum_probs=48.3

Q ss_pred             EEEEEEEecCCCcEEEEEECCEecCCC--CcEEEEEcCCEEEEEEcccCC----CCceeEEEEEEeCCCceee
Q psy16863        367 ARLLVEIRSPTEIKIHWYRNDRKLEEN--KIYRTQHDGNFYFIDLSSVSL----FDSGRWTCLAENAVGRSHC  433 (1075)
Q Consensus       367 v~l~C~~~g~p~~~v~W~k~g~~l~~~--~~~~~~~~g~~~~L~I~~v~~----~d~G~Y~C~a~n~~g~~~~  433 (1075)
                      +.|.|.+.|.|.|+|+|+|||.++...  .++.+...+.  .|.|..+..    .|+|.|+|.|+|..|....
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g--~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTG--TLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCc--eEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            479999999999999999999987433  3344333333  355655543    4789999999999998653

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.04  E-value=1.2e-09  Score=90.28  Aligned_cols=65  Identities=14%  Similarity=0.259  Sum_probs=49.3

Q ss_pred             EEEEEEEecCCCcEEEEEECCEecC--CCCcEEEEEcCCEEEEEEcccC----CCCceeEEEEEEeCCCceee
Q psy16863        367 ARLLVEIRSPTEIKIHWYRNDRKLE--ENKIYRTQHDGNFYFIDLSSVS----LFDSGRWTCLAENAVGRSHC  433 (1075)
Q Consensus       367 v~l~C~~~g~p~~~v~W~k~g~~l~--~~~~~~~~~~g~~~~L~I~~v~----~~d~G~Y~C~a~n~~g~~~~  433 (1075)
                      +.|.|.+.|.|.|.|+|+|+|..+.  .+.++.+...+.  .|.|..+.    .+|+|.|+|.|+|..|....
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~--~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSG--TLVIDFSGGGRPEDYEGEYQCFARNNLGTALS   71 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCc--eEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence            4799999999999999999999764  344555433332  47777653    24799999999999997653

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.04  E-value=1.6e-09  Score=91.31  Aligned_cols=76  Identities=11%  Similarity=0.240  Sum_probs=56.6

Q ss_pred             CCeEEEEEEEecCCCcEEEEEECCEecCCCC----cEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCC--ceeeEEEE
Q psy16863        364 GTRARLLVEIRSPTEIKIHWYRNDRKLEENK----IYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG--RSHCSCEL  437 (1075)
Q Consensus       364 G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~----~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g--~~~~s~~l  437 (1075)
                      |++++|.|.+.+.|.+.+.|+++++......    +..+......+.|.|.+++.+|+|.|+|.|+|..+  ....+..|
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            7899999999999999999999886543211    11111222356899999999999999999999876  44555555


Q ss_pred             Ee
Q psy16863        438 SV  439 (1075)
Q Consensus       438 ~V  439 (1075)
                      +|
T Consensus        81 ~V   82 (84)
T cd05861          81 TV   82 (84)
T ss_pred             EE
Confidence            55

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.01  E-value=3.8e-09  Score=90.31  Aligned_cols=81  Identities=23%  Similarity=0.393  Sum_probs=66.0

Q ss_pred             eeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEE-EEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEE
Q psy16863        359 IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRT-QHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCEL  437 (1075)
Q Consensus       359 ~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~-~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l  437 (1075)
                      ..+.+|+.+.|.|.+.+.|.+.+.|+|++..+........ ......+.|.|.++..+|+|.|.|.+.|..|....++.|
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l   83 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV   83 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence            4567899999999999999999999999998875544332 223445679999999999999999999999998777766


Q ss_pred             Ee
Q psy16863        438 SV  439 (1075)
Q Consensus       438 ~V  439 (1075)
                      .|
T Consensus        84 ~v   85 (85)
T cd05729          84 DV   85 (85)
T ss_pred             eC
Confidence            54

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.01  E-value=5.4e-09  Score=98.46  Aligned_cols=119  Identities=14%  Similarity=0.119  Sum_probs=81.8

Q ss_pred             EEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEE
Q psy16863        494 ALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQ  573 (1075)
Q Consensus       494 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~  573 (1075)
                      .|.|.+++..|+|.|.|.+.+..|.......|.|..                    +|.+...+.......|+.++|.|.
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~--------------------~P~v~~~~~~~~~~~~~~~~L~C~   61 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE--------------------PPRVRLSLEKLVSMIEEPQTLICH   61 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec--------------------CCceEEeCCCceeecCCcEEEEEE
Confidence            588999999999999999999888888888888862                    334444444444557899999999


Q ss_pred             EecCCC-CceEEEEeCCeEEec----CCcEE---EEEcCCceE----EEEEeeeeecCCceEEEEEECCCC
Q psy16863        574 VLVPPW-PRSIYWYNKEGVVEA----SDKYH---IMADGLGGY----SIEINYLEAVDDGEWKCVATSSSG  632 (1075)
Q Consensus       574 ~~~~p~-p~~v~W~~~~~~i~~----~~~~~---~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~g  632 (1075)
                      +.+..+ +..|.|++++.....    .....   ...++.+.+    .|.+..-..++...|+|.+.+...
T Consensus        62 a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l  132 (139)
T cd05771          62 IAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL  132 (139)
T ss_pred             ECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence            998643 358999998754211    11111   112222222    466665555667799999988654

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.01  E-value=2.8e-09  Score=92.06  Aligned_cols=83  Identities=22%  Similarity=0.302  Sum_probs=63.0

Q ss_pred             cCceeeccCCeEEEEEEEecCCCcEEEEEEC--------CEecCCCCcEEEEEc-CCEEEEEEcccCCCCceeEEEEEEe
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--------DRKLEENKIYRTQHD-GNFYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--------g~~l~~~~~~~~~~~-g~~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      +.++.+.+|++++|.|.+.+.|.+.+.||+.        +.....+.|+....+ .....|+|.+++.+|+|.|+|.+.+
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t   83 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT   83 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence            3567899999999999999999999999863        322333456655333 4556899999999999999999998


Q ss_pred             CCCceeeEEEEEe
Q psy16863        427 AVGRSHCSCELSV  439 (1075)
Q Consensus       427 ~~g~~~~s~~l~V  439 (1075)
                      ..+. ..++.|.|
T Consensus        84 ~~~~-~~~~~l~v   95 (95)
T cd07701          84 MPVK-TSKAYLTV   95 (95)
T ss_pred             ecCc-cEEEEEEC
Confidence            5443 55666654

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.00  E-value=3.1e-09  Score=88.75  Aligned_cols=68  Identities=21%  Similarity=0.327  Sum_probs=55.9

Q ss_pred             cCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCC-CcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCC
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN-KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAV  428 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~  428 (1075)
                      |.+..+..|+++.|.|.+.+ +.++|.|+|||.+|..+ .++.+ .++.   |.|.+++.+|+|.|+|.|.+..
T Consensus         3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~-~~~~---L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLL-YRDG---LLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEE-ECCc---EEEeCCCHHHCEEEEEEEEecc
Confidence            45678899999999999854 57899999999999776 44444 3333   8899999999999999998863

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=98.99  E-value=2.5e-09  Score=91.90  Aligned_cols=81  Identities=14%  Similarity=0.180  Sum_probs=60.2

Q ss_pred             ceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCC--cEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCc-eEE
Q psy16863        756 KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESD--NVKILKETLGVCHLKIHALEVADQAEWKCIATNDFG-QSI  832 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G-~~~  832 (1075)
                      +.+.+..|+++.|+|.+.+ |.+.+.|+|++..+....  ...+....   ..|.|.+++.+|+|.|+|.|.|..+ ...
T Consensus         4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~   79 (89)
T cd04979           4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTE---DGLLIRSVSPADAGVYTCQSVEHGFKQTL   79 (89)
T ss_pred             eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcC---CCEEEccCCHHHCEEEEEEEecCccceeE
Confidence            3456889999999999987 888999999998776542  11222222   2599999999999999999997654 344


Q ss_pred             EEEEEEEE
Q psy16863        833 TSCFLKLN  840 (1075)
Q Consensus       833 ~s~~l~V~  840 (1075)
                      .+..|.|.
T Consensus        80 ~~~~l~V~   87 (89)
T cd04979          80 ATYSLNVL   87 (89)
T ss_pred             eEEEEEEe
Confidence            45666554

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.94  E-value=4e-09  Score=89.72  Aligned_cols=78  Identities=17%  Similarity=0.334  Sum_probs=62.6

Q ss_pred             eecCceeeccCCeEEEEEEEec-CCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCcee
Q psy16863        354 RRLHDIAVKVGTRARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSH  432 (1075)
Q Consensus       354 ~~~~~~~v~~G~~v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~  432 (1075)
                      ..+....+.+|++++|.|.+.+ .|.+.+.|++++..+....    ...+  ..|.|.+++.+|+|.|+|.|.|..|...
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~----~~~~--~~L~I~~v~~~DsG~Y~C~a~n~~g~~~   79 (85)
T cd05754           6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA----MDFN--GILTIRNVQLSDAGTYVCTGSNMLDTDE   79 (85)
T ss_pred             cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc----cccC--CEEEECCCCHHHCEEEEEEEeccCCeEe
Confidence            3456678899999999999864 6788999999997664321    1112  2589999999999999999999999988


Q ss_pred             eEEEE
Q psy16863        433 CSCEL  437 (1075)
Q Consensus       433 ~s~~l  437 (1075)
                      .++.|
T Consensus        80 ~~~~l   84 (85)
T cd05754          80 ATATL   84 (85)
T ss_pred             EEEEE
Confidence            87765

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.93  E-value=6.6e-09  Score=90.53  Aligned_cols=83  Identities=8%  Similarity=0.228  Sum_probs=61.6

Q ss_pred             ceeeeecCCeEEEEEEEecCCCCeEEEEECCEE-e-------ecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeC
Q psy16863        756 KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQ-V-------VESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND  827 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~-i-------~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~  827 (1075)
                      ++..+.+|+++.|.|.+.+.|.+.+.|++.+.. +       ....++.+.........|+|.+++.+|+|.|+|.+.+.
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   84 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM   84 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence            456788999999999999989999999863321 1       12346665433344678999999999999999999987


Q ss_pred             CceEEEEEEEEE
Q psy16863        828 FGQSITSCFLKL  839 (1075)
Q Consensus       828 ~G~~~~s~~l~V  839 (1075)
                      .. .+.++.|+|
T Consensus        85 ~~-~~~~~~~~v   95 (95)
T cd05717          85 PV-QTAKATVTV   95 (95)
T ss_pred             CC-ceEEEEEEC
Confidence            53 355555554

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.93  E-value=1.2e-08  Score=87.64  Aligned_cols=81  Identities=17%  Similarity=0.293  Sum_probs=60.7

Q ss_pred             CceeeccCCeEEEEEEEecCCCcEEEEEECCEec--------CCCCcEEEEEc-CCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKL--------EENKIYRTQHD-GNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l--------~~~~~~~~~~~-g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      .++.+.+|+++.|.|.+.+.|.+.|.|+|++..+        ..+.++.+... .....|.|.++..+|+|.|+|.+...
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~   84 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM   84 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee
Confidence            5678999999999999999999999999987643        12345544333 34568999999999999999999873


Q ss_pred             CCceeeEEEEE
Q psy16863        428 VGRSHCSCELS  438 (1075)
Q Consensus       428 ~g~~~~s~~l~  438 (1075)
                       -..++.+.|+
T Consensus        85 -~~~~~~~~~~   94 (95)
T cd05882          85 -PVRTAKATVT   94 (95)
T ss_pred             -ccccEEEEEE
Confidence             2333444444

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.91  E-value=6.3e-09  Score=88.02  Aligned_cols=78  Identities=12%  Similarity=0.173  Sum_probs=58.0

Q ss_pred             CCeEEEEEEEecCCC--CeEEEEECCEEeec---CC--cEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEE
Q psy16863        763 NEEFKFTVQVSISPE--PKVSWFRDDQQVVE---SD--NVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSC  835 (1075)
Q Consensus       763 g~~~~l~C~v~g~p~--p~v~W~k~g~~i~~---~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~  835 (1075)
                      |+++.|.|.+.+.|.  ..+.|.+.++.+..   ..  +..........+.|.|.+++.+|+|.|+|.|+|..|....+.
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            789999999997664  57899988764321   11  111111112356899999999999999999999999988888


Q ss_pred             EEEEE
Q psy16863        836 FLKLN  840 (1075)
Q Consensus       836 ~l~V~  840 (1075)
                      .|.|+
T Consensus        81 ~~~V~   85 (86)
T cd05862          81 IVIVH   85 (86)
T ss_pred             EEEEe
Confidence            88875

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=98.90  E-value=7.1e-09  Score=89.02  Aligned_cols=78  Identities=19%  Similarity=0.217  Sum_probs=58.6

Q ss_pred             CceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCC----cEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCc-e
Q psy16863        357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENK----IYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGR-S  431 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~----~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~-~  431 (1075)
                      ..+.+.+|+++.|.|.+.+ |.+.+.|+|++..+....    ++.... +   .|.|.+++.+|+|.|+|.|.|..+. .
T Consensus         4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~-~---~L~I~~~~~~D~G~Y~C~a~~~~~~~~   78 (89)
T cd04979           4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTE-D---GLLIRSVSPADAGVYTCQSVEHGFKQT   78 (89)
T ss_pred             eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcC-C---CEEEccCCHHHCEEEEEEEecCcccee
Confidence            4567889999999999976 778999999998776542    333322 2   3889999999999999999977543 3


Q ss_pred             eeEEEEEe
Q psy16863        432 HCSCELSV  439 (1075)
Q Consensus       432 ~~s~~l~V  439 (1075)
                      ..+..|.|
T Consensus        79 ~~~~~l~V   86 (89)
T cd04979          79 LATYSLNV   86 (89)
T ss_pred             EeEEEEEE
Confidence            44455554

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.89  E-value=4.6e-09  Score=87.79  Aligned_cols=70  Identities=20%  Similarity=0.413  Sum_probs=53.0

Q ss_pred             EEEEEEEecCCCCceEEEEeCCeEEe--------cCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceeeeeE
Q psy16863        568 AILECQVLVPPWPRSIYWYNKEGVVE--------ASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAA  639 (1075)
Q Consensus       568 ~~L~C~~~~~p~p~~v~W~~~~~~i~--------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  639 (1075)
                      ++|.|.+.|.|.| .+.|+++++...        ...++.+..++    +|.|.++..+|+|.|+|.|.|..|.......
T Consensus         1 v~l~C~~~G~P~P-~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~----~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~   75 (79)
T cd05734           1 VTLNCSAEGYPPP-TIVWKHSKGRGHPQHTHTCCLAGRIQLLSNG----SLLIKHVLEEDSGYYLCKVSNDVGADASKSM   75 (79)
T ss_pred             CEeEeeCeEeCCC-EEEEEECCCccccccccccccCCCEEEecCC----eEEECcCCcccCEEEEEEEEeCCCCCCceEE
Confidence            5799999999988 899999754321        23344443333    7999999999999999999999998765554


Q ss_pred             EEE
Q psy16863        640 YVH  642 (1075)
Q Consensus       640 ~l~  642 (1075)
                      .|.
T Consensus        76 ~l~   78 (79)
T cd05734          76 VLT   78 (79)
T ss_pred             EEe
Confidence            443

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.89  E-value=5.6e-09  Score=87.65  Aligned_cols=65  Identities=17%  Similarity=0.183  Sum_probs=53.3

Q ss_pred             eeecCCeEEEEEEEec-CCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEE
Q psy16863        759 QATVNEEFKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSI  832 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g-~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~  832 (1075)
                      .+.+|++++|.|.+.+ .|.+.+.|||+|..+....         ....|.|.+++.+|+|.|+|.|.|..|...
T Consensus        10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~---------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~   75 (83)
T cd05753          10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH---------SNSNLSIPQATLSDSGSYHCSGIIGSYDYS   75 (83)
T ss_pred             eecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC---------CCceEEECccCHHHCEEEEEEEEeCCceec
Confidence            4789999999999864 5677899999998764211         134799999999999999999999998543

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.89  E-value=5.3e-09  Score=89.23  Aligned_cols=77  Identities=14%  Similarity=0.229  Sum_probs=60.1

Q ss_pred             eeeccCCeEEEEEEEec-----CCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceee
Q psy16863        359 IAVKVGTRARLLVEIRS-----PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHC  433 (1075)
Q Consensus       359 ~~v~~G~~v~l~C~~~g-----~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~  433 (1075)
                      +.+.+|+++.|.|...+     +|.+.+.|||||.++....+...  .+  ..|.|.++..+|+|.|+|.|.|..+....
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~--~~--~~L~I~~v~~~DsG~YtC~~~n~~~~~~~   80 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV--KG--SKLLIQNVTEEDAGNYTCKLTFTHNGKQY   80 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe--cC--CEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence            46788999999998643     25789999999999976554332  22  25899999999999999999999887765


Q ss_pred             EEEEEe
Q psy16863        434 SCELSV  439 (1075)
Q Consensus       434 s~~l~V  439 (1075)
                      .+..++
T Consensus        81 ~~t~t~   86 (92)
T cd05757          81 NVTRTI   86 (92)
T ss_pred             EEEEEE
Confidence            554444

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.87  E-value=2.1e-08  Score=84.59  Aligned_cols=70  Identities=26%  Similarity=0.453  Sum_probs=56.0

Q ss_pred             eeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCce-EEEEEE
Q psy16863        758 CQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQ-SITSCF  836 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~-~~~s~~  836 (1075)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++..+..+..           .|.|.++..+|+|.|+|.|.|..|. .+.++.
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~-----------~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~   77 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN-----------GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVN   77 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS-----------EEEESSEEGGGTEEEEEEEEETTEEEEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee-----------eeeeeeeccccCEEEEEEEEeCCCCeEeeeEE
Confidence            5588999999999999999999999999988763321           1778899999999999999997653 333444


Q ss_pred             EE
Q psy16863        837 LK  838 (1075)
Q Consensus       837 l~  838 (1075)
                      |.
T Consensus        78 v~   79 (80)
T PF13895_consen   78 VT   79 (80)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

...

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.87  E-value=4.5e-09  Score=88.95  Aligned_cols=73  Identities=14%  Similarity=0.242  Sum_probs=56.6

Q ss_pred             ceeeeecCCeEEEEEE-EecCCCCeEEEEECCEEe--ecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceE
Q psy16863        756 KSCQATVNEEFKFTVQ-VSISPEPKVSWFRDDQQV--VESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQS  831 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~-v~g~p~p~v~W~k~g~~i--~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~  831 (1075)
                      ....+.+|+.+.|.|. -.|.|.|.|.|+|++.++  ..+.+..+. ...|  .|.|.+++.+|+|.|+|.|+|.++..
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~-~~~G--~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVS-QTNG--NLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEe-CCCC--cEEEeecCHhhCceeEEEEEecccCC
Confidence            3456889999999997 457899999999999865  233333332 2233  79999999999999999999987654

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.86  E-value=1.2e-08  Score=87.00  Aligned_cols=73  Identities=14%  Similarity=0.204  Sum_probs=56.1

Q ss_pred             eeecCCeEEEEEEEecCCCCeEEEEECCEEe-e-------------cCCcEEEEE--eeCcEEEEEEccccCCCCeEEEE
Q psy16863        759 QATVNEEFKFTVQVSISPEPKVSWFRDDQQV-V-------------ESDNVKILK--ETLGVCHLKIHALEVADQAEWKC  822 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i-~-------------~~~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C  822 (1075)
                      .+.+|++++|.|..++.|.+.+.|+++++.. .             ..+++....  .+.+.+.|+|.+++.+|+|.|.|
T Consensus         3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C   82 (94)
T cd07690           3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC   82 (94)
T ss_pred             EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence            4778999999999999999999999877432 1             112232222  12356789999999999999999


Q ss_pred             EEEeCCceE
Q psy16863        823 IATNDFGQS  831 (1075)
Q Consensus       823 ~A~N~~G~~  831 (1075)
                      .+.|..++.
T Consensus        83 ~v~~~~~~~   91 (94)
T cd07690          83 EVEDKKEEV   91 (94)
T ss_pred             EECCccceE
Confidence            999987764

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.85  E-value=1.1e-08  Score=86.80  Aligned_cols=73  Identities=11%  Similarity=0.136  Sum_probs=55.0

Q ss_pred             eeeecCCeEEEEEE-Eec----CCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEE
Q psy16863        758 CQATVNEEFKFTVQ-VSI----SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSI  832 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~-v~g----~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~  832 (1075)
                      +.+..|.+..|.|. ..+    .+.|+++||||+++|....+......+  ...|.|.++..+|+|.|+|+|.|.+|...
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~--~~~L~I~~v~~~D~G~YtC~~~~~~~g~~   82 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKG--STYLHIIDVSLNDSGYYTCKLQFTHEGKK   82 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCC--CCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence            34667889999997 233    467899999999998755433222122  23699999999999999999999987653

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.85  E-value=2e-08  Score=85.73  Aligned_cols=77  Identities=18%  Similarity=0.290  Sum_probs=57.7

Q ss_pred             eeeecCCeEEEEEEEecCCCCeEEEEECC--EEe----ecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEE-eCCce
Q psy16863        758 CQATVNEEFKFTVQVSISPEPKVSWFRDD--QQV----VESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT-NDFGQ  830 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p~p~v~W~k~g--~~i----~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~-N~~G~  830 (1075)
                      +.+.+|+++.|.|.. +.|.|.++|||.+  ...    ....++...  .   ..|.|.+++++|+|.|+|.|. |..|.
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~--~---~~L~I~~~~~~DsG~Y~C~a~~~~~~~   79 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT--E---RGLLLRSLQRSDAGVYTCTAVEHSFSQ   79 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe--c---CeEEEeeCChhHCEEEEEEEEccCCeE
Confidence            457899999999997 4899999999843  221    123344332  1   359999999999999999998 67777


Q ss_pred             EEEEEEEEEE
Q psy16863        831 SITSCFLKLN  840 (1075)
Q Consensus       831 ~~~s~~l~V~  840 (1075)
                      ....+.|.|.
T Consensus        80 ~~~~~~l~v~   89 (91)
T cd05871          80 TLAKYTLHVI   89 (91)
T ss_pred             EEEEEEEEEe
Confidence            7777777765

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.84  E-value=3.7e-08  Score=83.26  Aligned_cols=84  Identities=12%  Similarity=0.251  Sum_probs=67.4

Q ss_pred             eeeeecCCeEEEEEEEecCCCCe-EEEEECCEEeecCCcEEEEEeeC----cEEEEEEccccCCCCeEEEEEEEeCCceE
Q psy16863        757 SCQATVNEEFKFTVQVSISPEPK-VSWFRDDQQVVESDNVKILKETL----GVCHLKIHALEVADQAEWKCIATNDFGQS  831 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~g~p~p~-v~W~k~g~~i~~~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~  831 (1075)
                      .+.|.+|+.+.|.|.+.+.|.|+ +.|.+++..+.......+.....    -.+.|.+..+..+|+|.|+|.|.|..+.+
T Consensus        12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~   91 (101)
T cd05860          12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA   91 (101)
T ss_pred             eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence            45689999999999999999998 99999998775443312222211    35789999999999999999999999888


Q ss_pred             EEEEEEEEE
Q psy16863        832 ITSCFLKLN  840 (1075)
Q Consensus       832 ~~s~~l~V~  840 (1075)
                      ..++.|.|+
T Consensus        92 s~tF~l~v~  100 (101)
T cd05860          92 SVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEe
Confidence            777777764

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>smart00410 IG_like Immunoglobulin like

Probab=98.83  E-value=6.1e-08  Score=82.92  Aligned_cols=82  Identities=24%  Similarity=0.449  Sum_probs=68.2

Q ss_pred             eeeeecCCeEEEEEEEecCCCCeEEEEEC-CEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEE
Q psy16863        757 SCQATVNEEFKFTVQVSISPEPKVSWFRD-DQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSC  835 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~g~p~p~v~W~k~-g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~  835 (1075)
                      ...+..|+++.|.|.+.+.+.+.+.|+++ +..+....++....... ...|.|.+++.+|+|.|+|.+.|..|.....+
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~   81 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNSSGSASSTT   81 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence            34577899999999999988899999998 88887666676654433 57899999999999999999999988877666


Q ss_pred             EEEE
Q psy16863        836 FLKL  839 (1075)
Q Consensus       836 ~l~V  839 (1075)
                      .|.|
T Consensus        82 ~l~V   85 (86)
T smart00410       82 TLTV   85 (86)
T ss_pred             EEEE
Confidence            5554

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=98.83  E-value=6.1e-08  Score=82.92  Aligned_cols=82  Identities=24%  Similarity=0.449  Sum_probs=68.2

Q ss_pred             eeeeecCCeEEEEEEEecCCCCeEEEEEC-CEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEE
Q psy16863        757 SCQATVNEEFKFTVQVSISPEPKVSWFRD-DQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSC  835 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~g~p~p~v~W~k~-g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~  835 (1075)
                      ...+..|+++.|.|.+.+.+.+.+.|+++ +..+....++....... ...|.|.+++.+|+|.|+|.+.|..|.....+
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~   81 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNSSGSASSTT   81 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence            34577899999999999988899999998 88887666676654433 57899999999999999999999988877666


Q ss_pred             EEEE
Q psy16863        836 FLKL  839 (1075)
Q Consensus       836 ~l~V  839 (1075)
                      .|.|
T Consensus        82 ~l~V   85 (86)
T smart00409       82 TLTV   85 (86)
T ss_pred             EEEE
Confidence            5554

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.83  E-value=1.5e-08  Score=80.78  Aligned_cols=63  Identities=22%  Similarity=0.522  Sum_probs=51.7

Q ss_pred             cCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCc
Q psy16863        762 VNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFG  829 (1075)
Q Consensus       762 ~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G  829 (1075)
                      +|+++.|.|.+.+.|.+.+.|+|++..+..  .....   .....|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNRLS---ASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCC--CCEEe---cCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            478999999999999999999999988872  22221   1234799999999999999999999875

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.83  E-value=7.2e-09  Score=87.53  Aligned_cols=72  Identities=13%  Similarity=0.255  Sum_probs=58.4

Q ss_pred             cceeeeecCCeEEEEEE-EecCCCCeEEEEECCEE-eecCCcEEEEEeeCcEEEEEEccccCCCCe-EEEEEEEeCCce
Q psy16863        755 LKSCQATVNEEFKFTVQ-VSISPEPKVSWFRDDQQ-VVESDNVKILKETLGVCHLKIHALEVADQA-EWKCIATNDFGQ  830 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~-v~g~p~p~v~W~k~g~~-i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~A~N~~G~  830 (1075)
                      ++.+.+.+|+++.|.|. ..|.|.|.|.|++++.. +..+.|+.+..  .|  .|.|.+++.+|+| .|.|.|+|.+..
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~--~G--nL~fs~v~~~D~g~~Y~C~a~~~~~~   84 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQ--NG--NLYFANVEEQDSHPDYICHAHFPGLR   84 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECC--Cc--eEEEEEEehhhCCCCeEEEEEccccc
Confidence            56688999999999997 69999999999988755 44455554432  23  7999999999999 799999998644

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.80  E-value=1.8e-08  Score=84.61  Aligned_cols=66  Identities=17%  Similarity=0.164  Sum_probs=53.0

Q ss_pred             ceeeccCCeEEEEEEEec-CCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCce
Q psy16863        358 DIAVKVGTRARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS  431 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~  431 (1075)
                      ...+.+|++++|.|.+.+ .+...+.|||+|..+...        .....|.|.+++.+|+|.|+|.+.|..|..
T Consensus         8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~--------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~   74 (83)
T cd05753           8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS--------HSNSNLSIPQATLSDSGSYHCSGIIGSYDY   74 (83)
T ss_pred             cceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc--------CCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence            446899999999999843 556789999999876421        112358999999999999999999998754

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.80  E-value=1.3e-08  Score=86.29  Aligned_cols=72  Identities=18%  Similarity=0.351  Sum_probs=56.8

Q ss_pred             CceeeccCCeEEEEEEE-ecCCCcEEEEEECCEec--CCCCcEEEEE-cCCEEEEEEcccCCCCceeEEEEEEeCCCce
Q psy16863        357 HDIAVKVGTRARLLVEI-RSPTEIKIHWYRNDRKL--EENKIYRTQH-DGNFYFIDLSSVSLFDSGRWTCLAENAVGRS  431 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~-~g~p~~~v~W~k~g~~l--~~~~~~~~~~-~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~  431 (1075)
                      ....+.+|+.+.|.|.. .|.|.+.|.|+|++.++  ..+.+..+.. +|+   |.|.+++.+|+|.|+|.|+|.....
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~---L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGN---LYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCc---EEEeecCHhhCceeEEEEEecccCC
Confidence            45678999999999986 67899999999999764  2333333333 454   8899999999999999999986543

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.78  E-value=4.1e-08  Score=82.71  Aligned_cols=71  Identities=31%  Similarity=0.564  Sum_probs=55.7

Q ss_pred             eeecCCCeEEEEEEEEccCCCeeEEEECCEEcCCCCeeEEEECCCCceeeEEEEEEEEeCCe-eEEEEEEEEE
Q psy16863        856 AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCMG-TTSSSAALLG  927 (1075)
Q Consensus       856 ~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~~~i~~~~~~~~d~G~Y~C~a~N~~G-~~~~~~~l~v  927 (1075)
                      ..+.+|+.++|.|.+.+.|.+.+.|++++..+..+... +++......|+|.|+|.|.|..| ..+..+.|.|
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQNG-LFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV   80 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESSE-EEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeeee-eeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence            44778999999999999999999999999999855443 44556667889999999999665 4445555543

...

>smart00409 IG Immunoglobulin

Probab=98.76  E-value=1.3e-07  Score=80.74  Aligned_cols=83  Identities=27%  Similarity=0.494  Sum_probs=69.6

Q ss_pred             CceeeccCCeEEEEEEEecCCCcEEEEEEC-CEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEE
Q psy16863        357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRN-DRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC  435 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~-g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~  435 (1075)
                      ....+..|+++.|.|.+.+.+.+.+.|+++ +..+....++.....+....|.|.++..+|+|.|+|.+.+..+......
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~   81 (86)
T smart00409        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT   81 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence            345678999999999998888899999998 8888766777777766677899999999999999999998887776665


Q ss_pred             EEEe
Q psy16863        436 ELSV  439 (1075)
Q Consensus       436 ~l~V  439 (1075)
                      .|.|
T Consensus        82 ~l~V   85 (86)
T smart00409       82 TLTV   85 (86)
T ss_pred             EEEE
Confidence            5554

>smart00410 IG_like Immunoglobulin like

Probab=98.76  E-value=1.3e-07  Score=80.74  Aligned_cols=83  Identities=27%  Similarity=0.494  Sum_probs=69.6

Q ss_pred             CceeeccCCeEEEEEEEecCCCcEEEEEEC-CEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEE
Q psy16863        357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRN-DRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC  435 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~-g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~  435 (1075)
                      ....+..|+++.|.|.+.+.+.+.+.|+++ +..+....++.....+....|.|.++..+|+|.|+|.+.+..+......
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~   81 (86)
T smart00410        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT   81 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence            345678999999999998888899999998 8888766777777766677899999999999999999998887776665


Q ss_pred             EEEe
Q psy16863        436 ELSV  439 (1075)
Q Consensus       436 ~l~V  439 (1075)
                      .|.|
T Consensus        82 ~l~V   85 (86)
T smart00410       82 TLTV   85 (86)
T ss_pred             EEEE
Confidence            5554

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.75  E-value=7.4e-08  Score=83.87  Aligned_cols=82  Identities=22%  Similarity=0.355  Sum_probs=59.7

Q ss_pred             CceeeccCCeEEEEEEEecCCCcEEEEEECCEec--------CCCCcEEEEE-cCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKL--------EENKIYRTQH-DGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l--------~~~~~~~~~~-~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      +++.+.+|++++|.|.+.+.+.+.+.|++.+..+        ....++.+.. .+....|+|.+++.+|+|.|+|.+.+.
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   84 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM   84 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence            5678999999999999988888899998633211        1234555532 334567999999999999999999976


Q ss_pred             CCceeeEEEEEe
Q psy16863        428 VGRSHCSCELSV  439 (1075)
Q Consensus       428 ~g~~~~s~~l~V  439 (1075)
                      .. ...++.|+|
T Consensus        85 ~~-~~~~~~~~v   95 (95)
T cd05717          85 PV-QTAKATVTV   95 (95)
T ss_pred             CC-ceEEEEEEC
Confidence            43 344555544

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.74  E-value=3.2e-08  Score=84.34  Aligned_cols=73  Identities=18%  Similarity=0.276  Sum_probs=55.2

Q ss_pred             eeeccCCeEEEEEEEecCCCcEEEEEECCEec-C-------------CCCcEEEEE---cCCEEEEEEcccCCCCceeEE
Q psy16863        359 IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKL-E-------------ENKIYRTQH---DGNFYFIDLSSVSLFDSGRWT  421 (1075)
Q Consensus       359 ~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l-~-------------~~~~~~~~~---~g~~~~L~I~~v~~~d~G~Y~  421 (1075)
                      +.+.+|++|+|.|...+.+.+.|.||+++... .             ...++....   ++..+.|+|.+++.+|+|.|.
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            45789999999999988889999999877432 1             112222222   334567999999999999999


Q ss_pred             EEEEeCCCce
Q psy16863        422 CLAENAVGRS  431 (1075)
Q Consensus       422 C~a~n~~g~~  431 (1075)
                      |.+.|..+..
T Consensus        82 C~v~~~~~~~   91 (94)
T cd07690          82 CEVEDKKEEV   91 (94)
T ss_pred             EEECCccceE
Confidence            9999876643

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.73  E-value=3.8e-08  Score=80.14  Aligned_cols=64  Identities=16%  Similarity=0.215  Sum_probs=48.9

Q ss_pred             EEEEEEEe-cCCCCeEEEEECCEEeecCCcEEEEEee---CcEEEEEEccccCCCCeEEEEEEEeCCceE
Q psy16863        766 FKFTVQVS-ISPEPKVSWFRDDQQVVESDNVKILKET---LGVCHLKIHALEVADQAEWKCIATNDFGQS  831 (1075)
Q Consensus       766 ~~l~C~v~-g~p~p~v~W~k~g~~i~~~~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~  831 (1075)
                      +.|+|... |+|+++|+|||||++|.......  ..+   .....|.|.....+|.+.|+|+|.|.++..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~--~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQ--ENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccc--cCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            68999977 57999999999999996432100  000   013479999999999999999999998764

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.71  E-value=2.7e-08  Score=79.42  Aligned_cols=62  Identities=19%  Similarity=0.407  Sum_probs=47.3

Q ss_pred             CCeEEEEEEE-ecCCCCeEEEEECCEEeecCCcEEEEEeeCcEE-EEEEccccCCCCeEEEEEE
Q psy16863        763 NEEFKFTVQV-SISPEPKVSWFRDDQQVVESDNVKILKETLGVC-HLKIHALEVADQAEWKCIA  824 (1075)
Q Consensus       763 g~~~~l~C~v-~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~-~L~I~~~~~~D~G~Y~C~A  824 (1075)
                      |+++.|.|.+ .+.|.+.++|+|+++.+................ .|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 777888999999998665544333322222111 3999999999999999987

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.70  E-value=6.7e-08  Score=81.74  Aligned_cols=77  Identities=22%  Similarity=0.270  Sum_probs=57.5

Q ss_pred             CCeEEEEEEEecCC--CcEEEEEECCEecCCC---C--cEEE-EEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEE
Q psy16863        364 GTRARLLVEIRSPT--EIKIHWYRNDRKLEEN---K--IYRT-QHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC  435 (1075)
Q Consensus       364 G~~v~l~C~~~g~p--~~~v~W~k~g~~l~~~---~--~~~~-~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~  435 (1075)
                      |+++.|.|.+.+.+  ...+.|.+.+..+...   .  +... ......+.|.|.+++.+|+|.|+|.|+|..|....+.
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            78999999998754  5688999988644211   1  1111 1123456899999999999999999999988888888


Q ss_pred             EEEee
Q psy16863        436 ELSVL  440 (1075)
Q Consensus       436 ~l~V~  440 (1075)
                      .|.|.
T Consensus        81 ~~~V~   85 (86)
T cd05862          81 IVIVH   85 (86)
T ss_pred             EEEEe
Confidence            77774

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.70  E-value=8.4e-08  Score=79.43  Aligned_cols=78  Identities=12%  Similarity=0.169  Sum_probs=60.5

Q ss_pred             ceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEE
Q psy16863        756 KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSC  835 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~  835 (1075)
                      ++.++..|+++.|.|...+ +.+.+.|+++|.++..+.++.....     -|.|.+++.+|+|.|.|.|. +.|-...-+
T Consensus         4 ~~~tv~~g~~v~L~C~~~s-~~A~v~W~~ng~~l~~~~r~~~~~~-----GLlI~~~~~~dsG~Y~C~s~-E~gf~~~~~   76 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRS-NLASPVWLFNGTPLNAQFSYRVGTD-----GLLILVTSPEHSGTYRCYSE-EEGFQQLVA   76 (85)
T ss_pred             eEEEEecCCCEEEECCCCC-CCccEEEEECCcccCCCcceEEeCC-----CCEEEECCHhhCEEEEEEEe-cCCCeEEEE
Confidence            4577999999999999995 5779999999999987766655432     28899999999999999987 345544444


Q ss_pred             EEEEE
Q psy16863        836 FLKLN  840 (1075)
Q Consensus       836 ~l~V~  840 (1075)
                      .+.+.
T Consensus        77 ~y~l~   81 (85)
T cd05872          77 SYSLN   81 (85)
T ss_pred             EEEEE
Confidence            44443

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.70  E-value=2.3e-07  Score=78.94  Aligned_cols=71  Identities=23%  Similarity=0.344  Sum_probs=57.9

Q ss_pred             CceeeccCCeEEEEEEEecCCCcEEEEEECCEec--------CCCCcEEEEE-cCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKL--------EENKIYRTQH-DGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l--------~~~~~~~~~~-~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      +++.+.+|++++|.|.+.+.....+.|++-|..+        ..+.|+.... ++..+.|+|.+++.+|+|.|.|++...
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            5678999999999999988767788898766432        2456776665 577889999999999999999999753

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.69  E-value=1.7e-07  Score=79.33  Aligned_cols=84  Identities=18%  Similarity=0.234  Sum_probs=67.2

Q ss_pred             CceeeccCCeEEEEEEEecCCCcE-EEEEECCEecCCCCcEEEEEc--C---CEEEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863        357 HDIAVKVGTRARLLVEIRSPTEIK-IHWYRNDRKLEENKIYRTQHD--G---NFYFIDLSSVSLFDSGRWTCLAENAVGR  430 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p~~~-v~W~k~g~~l~~~~~~~~~~~--g---~~~~L~I~~v~~~d~G~Y~C~a~n~~g~  430 (1075)
                      ..+.|.+|+.+.|.|.+.+.|+|+ +.|.+++..+...........  +   -.+.|.+.++..+|+|.|+|.|.|..+.
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~   90 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence            456899999999999999999997 999999987754433122221  1   2368999999999999999999999888


Q ss_pred             eeeEEEEEee
Q psy16863        431 SHCSCELSVL  440 (1075)
Q Consensus       431 ~~~s~~l~V~  440 (1075)
                      .+.++.|.|.
T Consensus        91 ~s~tF~l~v~  100 (101)
T cd05860          91 ASVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEEe
Confidence            8877777764

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.69  E-value=2.1e-07  Score=79.12  Aligned_cols=72  Identities=8%  Similarity=0.223  Sum_probs=58.2

Q ss_pred             ceeeeecCCeEEEEEEEecCCCCeEEEEECCEEe--------ecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeC
Q psy16863        756 KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQV--------VESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND  827 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i--------~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~  827 (1075)
                      +++++.+|+++.|+|.+.+.....+.|++-+..+        ..+.|+.....+....+|.|.+++.+|+|.|.|.+...
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            4677999999999999998877778888766432        25667877654456789999999999999999999753

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.68  E-value=5.7e-08  Score=77.32  Aligned_cols=63  Identities=32%  Similarity=0.487  Sum_probs=50.7

Q ss_pred             cCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCC
Q psy16863        363 VGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG  429 (1075)
Q Consensus       363 ~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g  429 (1075)
                      +|+++.|.|.+.+.+.+.+.|+|++..+..  .....  .....|.|.++..+|+|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNRLS--ASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCC--CCEEe--cCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            588999999988888899999999988872  22222  2233689999999999999999998765

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.67  E-value=8.2e-08  Score=76.59  Aligned_cols=61  Identities=23%  Similarity=0.451  Sum_probs=49.5

Q ss_pred             CCeEEEEEEE-ecCCCcEEEEEECCEecCCCCcEEEEEcCCEE--EEEEcccCCCCceeEEEEE
Q psy16863        364 GTRARLLVEI-RSPTEIKIHWYRNDRKLEENKIYRTQHDGNFY--FIDLSSVSLFDSGRWTCLA  424 (1075)
Q Consensus       364 G~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~--~L~I~~v~~~d~G~Y~C~a  424 (1075)
                      |+.++|.|.+ .+.+...+.|+|++..+...........+...  .|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 77888999999999877655544444444332  3999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.66  E-value=1.3e-07  Score=79.70  Aligned_cols=67  Identities=21%  Similarity=0.332  Sum_probs=48.4

Q ss_pred             eEEEEEEEec-CCCCeEEEEECCEEeecCCcEEEEEeeCc----EEEEEEccccCCCCeEEEEEEEeCCceE
Q psy16863        765 EFKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKETLG----VCHLKIHALEVADQAEWKCIATNDFGQS  831 (1075)
Q Consensus       765 ~~~l~C~v~g-~p~p~v~W~k~g~~i~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~~G~~  831 (1075)
                      ++.|+|.+.| .|.+.|+|+|+|+++............++    .+.|.|.....+|.|.|+|.|.|.....
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~   72 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPT   72 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCC
Confidence            3689999997 68899999999998864321111111111    3468888888899999999999986543

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.63  E-value=1.8e-07  Score=79.93  Aligned_cols=78  Identities=14%  Similarity=0.163  Sum_probs=54.8

Q ss_pred             ceeeccCCeEEEEEEEecCCCcEEEEEECC--Eec----CCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEe-CCCc
Q psy16863        358 DIAVKVGTRARLLVEIRSPTEIKIHWYRND--RKL----EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN-AVGR  430 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g--~~l----~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n-~~g~  430 (1075)
                      .+.+.+|+++.|.|.. +.|.+.+.|||.+  ...    ....++... +   ..|.|.++..+|+|.|+|.|.| ..+.
T Consensus         5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~-~---~~L~I~~~~~~DsG~Y~C~a~~~~~~~   79 (91)
T cd05871           5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT-E---RGLLLRSLQRSDAGVYTCTAVEHSFSQ   79 (91)
T ss_pred             EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe-c---CeEEEeeCChhHCEEEEEEEEccCCeE
Confidence            3467899999999996 5788999999843  221    122343332 2   2388999999999999999984 5555


Q ss_pred             eeeEEEEEee
Q psy16863        431 SHCSCELSVL  440 (1075)
Q Consensus       431 ~~~s~~l~V~  440 (1075)
                      ......|.|.
T Consensus        80 ~~~~~~l~v~   89 (91)
T cd05871          80 TLAKYTLHVI   89 (91)
T ss_pred             EEEEEEEEEe
Confidence            5555555553

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.60  E-value=2.2e-07  Score=78.81  Aligned_cols=79  Identities=24%  Similarity=0.359  Sum_probs=58.5

Q ss_pred             eeeccCCeEEEEEEEe-----------cCCCcEEEEEECCEecCCCCc-----EEEEEcCCEEEEEEcccCCCCceeEEE
Q psy16863        359 IAVKVGTRARLLVEIR-----------SPTEIKIHWYRNDRKLEENKI-----YRTQHDGNFYFIDLSSVSLFDSGRWTC  422 (1075)
Q Consensus       359 ~~v~~G~~v~l~C~~~-----------g~p~~~v~W~k~g~~l~~~~~-----~~~~~~g~~~~L~I~~v~~~d~G~Y~C  422 (1075)
                      ..+.+|+++.|.|...           ......+.|||++..+.....     .++...+.  .|.|.++..+|+|.|+|
T Consensus        10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa~~eDSG~Y~C   87 (104)
T cd05896          10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPAELQDSGLYTC   87 (104)
T ss_pred             EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeCChhhCeEEEE
Confidence            5678999999999961           122458999999865544331     23444444  48899999999999999


Q ss_pred             EEEeCCCceeeEEEEEe
Q psy16863        423 LAENAVGRSHCSCELSV  439 (1075)
Q Consensus       423 ~a~n~~g~~~~s~~l~V  439 (1075)
                      ++.|.......+..|+|
T Consensus        88 ~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          88 VLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             EECCCCcceEEEEEEEC
Confidence            99998877776666654

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.60  E-value=1.5e-07  Score=76.61  Aligned_cols=63  Identities=22%  Similarity=0.282  Sum_probs=48.9

Q ss_pred             EEEEEEE-ecCCCcEEEEEECCEecCCCCcEEEEEcCC----EEEEEEcccCCCCceeEEEEEEeCCCce
Q psy16863        367 ARLLVEI-RSPTEIKIHWYRNDRKLEENKIYRTQHDGN----FYFIDLSSVSLFDSGRWTCLAENAVGRS  431 (1075)
Q Consensus       367 v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~----~~~L~I~~v~~~d~G~Y~C~a~n~~g~~  431 (1075)
                      +.|.|.. .|+|++.|+|||||++|.....  ...++.    ...|.|.....+|.+.|+|+|.|.++..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~--~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVIS--QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcc--cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            6899998 5689999999999999965321  112222    2368898889999999999999998764

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.59  E-value=1.6e-07  Score=79.42  Aligned_cols=72  Identities=19%  Similarity=0.373  Sum_probs=58.1

Q ss_pred             ccceEeecCCeEEEEEE-EecCCCCceEEEEeCCeE-EecCCcEEEEEcCCceEEEEEeeeeecCCc-eEEEEEECCCCc
Q psy16863        557 VENVKAKIGTSAILECQ-VLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGGYSIEINYLEAVDDG-EWKCVATSSSGV  633 (1075)
Q Consensus       557 ~~~~~v~~G~~~~L~C~-~~~~p~p~~v~W~~~~~~-i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~n~~g~  633 (1075)
                      .+.+.+.+|+.+.|.|. ..|.|.| .|.|++++.. +..+.++.+..+|    .|.|.+++..|+| .|.|.|.|....
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P-~i~W~~~~~~~i~~~~Ri~~~~~G----nL~fs~v~~~D~g~~Y~C~a~~~~~~   84 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPL-RIYWMNSDLLHITQDERVSMGQNG----NLYFANVEEQDSHPDYICHAHFPGLR   84 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCC-EEEEECCCCccccccccEEECCCc----eEEEEEEehhhCCCCeEEEEEccccc
Confidence            46788999999999997 5888888 8999987655 3344555554444    8999999999999 799999998644

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>PHA03376 BARF1; Provisional

Probab=98.59  E-value=7e-07  Score=82.24  Aligned_cols=124  Identities=18%  Similarity=0.371  Sum_probs=79.0

Q ss_pred             ceeeccCCeEEEEEEEe---cCCCcEEEEEECCE----ec-------------CCCCcEEEEEcCCEEEEEEcccCCCCc
Q psy16863        358 DIAVKVGTRARLLVEIR---SPTEIKIHWYRNDR----KL-------------EENKIYRTQHDGNFYFIDLSSVSLFDS  417 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~~---g~p~~~v~W~k~g~----~l-------------~~~~~~~~~~~g~~~~L~I~~v~~~d~  417 (1075)
                      .+.+..|+.+.|.|...   ..+...|.|+|.+.    .+             +...++.+..+.+...|.|.+++.+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            45677899999999974   23567999999431    11             112334454556677899999999999


Q ss_pred             eeEEEEEEeCCCceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCE
Q psy16863        418 GRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNK  485 (1075)
Q Consensus       418 G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~  485 (1075)
                      |+|+|...-........-.|++..|-..   .+..+. .....-+..++.|.+.|+|.|.+.|.-+..
T Consensus       100 GtY~C~fQkge~~~~k~ehLt~V~~~~L---sv~a~~-~dFp~~~~~~i~C~sggfP~P~~~Wle~~~  163 (221)
T PHA03376        100 GNYLCRMKLGETEVTKQEHLSVVKPLTL---SVHSER-SQFPDFSVLTVTCTVNAFPHPHVQWLMPEG  163 (221)
T ss_pred             ceEEEEEEcCCCceeeeeeeeeeecceE---EEEecc-ccCCCCCeeEEEEecCCcCCchheeccccC
Confidence            9999999865433333333333221100   111110 112224567899998889999999987543

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.57  E-value=2.3e-07  Score=78.85  Aligned_cols=72  Identities=21%  Similarity=0.388  Sum_probs=53.7

Q ss_pred             eeeccCCeEEEEEEE-e----cCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCce
Q psy16863        359 IAVKVGTRARLLVEI-R----SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS  431 (1075)
Q Consensus       359 ~~v~~G~~v~l~C~~-~----g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~  431 (1075)
                      +.+.+|.+..|.|.- .    ..+.+.|+||||+.+|....+......+. ..|.|.++..+|+|.|+|+|.+..|..
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~-~~L~I~~v~~~D~G~YtC~~~~~~~g~   81 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGS-TYLHIIDVSLNDSGYYTCKLQFTHEGK   81 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCC-CEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence            456788999999972 2    34577999999999987544322222222 249999999999999999999987654

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.57  E-value=2.8e-07  Score=76.30  Aligned_cols=78  Identities=24%  Similarity=0.318  Sum_probs=62.0

Q ss_pred             CceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEE
Q psy16863        357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCE  436 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~  436 (1075)
                      ....+.+|+++.|.|...+. .+.+.|+++|..+..+.++....+|    |.|..+..+|+|.|.|.+. ..|-...-+.
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~   77 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSE-EEGFQQLVAS   77 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEe-cCCCeEEEEE
Confidence            45688999999999999665 6799999999999887777777666    5689999999999999987 3355554444


Q ss_pred             EEee
Q psy16863        437 LSVL  440 (1075)
Q Consensus       437 l~V~  440 (1075)
                      +.+.
T Consensus        78 y~l~   81 (85)
T cd05872          78 YSLN   81 (85)
T ss_pred             EEEE
Confidence            4443

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.56  E-value=3.6e-07  Score=77.49  Aligned_cols=80  Identities=16%  Similarity=0.219  Sum_probs=56.9

Q ss_pred             eeeeecCCeEEEEEEEe-----------cCCCCeEEEEECCEEeecCCc-----EEEEEeeCcEEEEEEccccCCCCeEE
Q psy16863        757 SCQATVNEEFKFTVQVS-----------ISPEPKVSWFRDDQQVVESDN-----VKILKETLGVCHLKIHALEVADQAEW  820 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~-----------g~p~p~v~W~k~g~~i~~~~~-----~~~~~~~~~~~~L~I~~~~~~D~G~Y  820 (1075)
                      ...+.+|+++.|.|...           ..+...++|||++..+.....     .++...+   ..|.|.++..+|+|.|
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~---~~Lwf~Pa~~eDSG~Y   85 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEE---DSIWFRPAELQDSGLY   85 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeC---CEEEEEeCChhhCeEE
Confidence            35688999999999971           122348999999865554331     1222222   2799999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEE
Q psy16863        821 KCIATNDFGQSITSCFLKL  839 (1075)
Q Consensus       821 ~C~A~N~~G~~~~s~~l~V  839 (1075)
                      +|++.|.-.-...++.|+|
T Consensus        86 ~C~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          86 TCVLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             EEEECCCCcceEEEEEEEC
Confidence            9999998766655555543

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.49  E-value=1e-06  Score=74.26  Aligned_cols=73  Identities=16%  Similarity=0.262  Sum_probs=51.5

Q ss_pred             eEEEEEEEec-CCCcEEEEEECCEecCCCCcE-EEEEcCC----EEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEE
Q psy16863        366 RARLLVEIRS-PTEIKIHWYRNDRKLEENKIY-RTQHDGN----FYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELS  438 (1075)
Q Consensus       366 ~v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~~-~~~~~g~----~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~  438 (1075)
                      ++.|.|.+.| .|.+.|+|+|+|+++...... ....+|.    ...|.|.....+|.|.|+|.|.|..........++
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~   79 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVT   79 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEE
Confidence            3689999977 688899999999988654321 1223333    24678888777888999999999875544333333

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.41  E-value=7.9e-07  Score=76.36  Aligned_cols=67  Identities=15%  Similarity=0.207  Sum_probs=52.3

Q ss_pred             CceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      +...|.+|++|+|.|... .+...+.|+|+|......   .....+....|.|.+++.+|+|.|+|...|.
T Consensus         9 p~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~---~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751           9 PSSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK---KPPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CCCccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc---ccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            355789999999999884 567799999999754321   1123445567899999999999999999886

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.40  E-value=5.6e-07  Score=74.57  Aligned_cols=73  Identities=21%  Similarity=0.401  Sum_probs=48.0

Q ss_pred             CeEEeccceeeeecCCeEEEEEEEecCC-CCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        749 PKFIEGLKSCQATVNEEFKFTVQVSISP-EPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       749 p~~~~~~~~~~~~~g~~~~l~C~v~g~p-~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      |.+...........+. +.|+|.+.+.| .+.++|+ +.........   .........|.|.++..+|.|.|+|.|+|
T Consensus         2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~~~~---~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFNSNS---RGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEEEEE---EEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCceeeee---eeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            4444444443333333 99999999988 8899999 2211111111   11122355899999999999999999998

...

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.39  E-value=3.6e-06  Score=74.12  Aligned_cols=86  Identities=21%  Similarity=0.348  Sum_probs=57.7

Q ss_pred             CCeEEEEEEecCC---CeeEEEEc-cCCCeeEEEeeCCCcee------ccCcEEEEe---cCCeEEEEEceeccCCCeEE
Q psy16863        150 GTRARLLVEIRSP---TEIKCQFD-LNNTIPFSFRAQGDHPI------FGNRFRAIN---RDGRTELNIRRVRRDDGGRY  216 (1075)
Q Consensus       150 G~~~~l~c~~~~~---~~~~c~~~-~~~~~~~~W~~~~~~~~------~~~~~~~~~---~~~~~~L~I~~~~~~D~G~Y  216 (1075)
                      |++++|.|...+.   ..+...|. ..+...+.|++++....      ..+|+.+..   ..+...|+|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            6789999998633   22344443 22334566666553222      224555432   24567999999999999999


Q ss_pred             EEEEEcCceeEEEEEEEee
Q psy16863        217 SVTASNESGYSTAKFELSV  235 (1075)
Q Consensus       217 ~C~a~n~~g~~~~~~~l~V  235 (1075)
                      +|.+.|..+..+..+.|.|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999998887777777765

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.38  E-value=1.5e-06  Score=78.17  Aligned_cols=75  Identities=19%  Similarity=0.232  Sum_probs=57.0

Q ss_pred             cceeeeecCCeEEEEEEEecCCCCeEEEEECCE---Ee-----------ecCCcEEEEEe-eCcEEEEEEccccCCCCeE
Q psy16863        755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQ---QV-----------VESDNVKILKE-TLGVCHLKIHALEVADQAE  819 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~---~i-----------~~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~  819 (1075)
                      +....+.+|++++|.|.+.+.+...+.|||...   +.           ...+++.+... ..+.+.|.|.+++.+|+|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~   84 (109)
T cd04983           5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAV   84 (109)
T ss_pred             CCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEE
Confidence            345668999999999999988888999998531   11           12345655432 2467899999999999999


Q ss_pred             EEEEEEeCCc
Q psy16863        820 WKCIATNDFG  829 (1075)
Q Consensus       820 Y~C~A~N~~G  829 (1075)
                      |.|.+.+..+
T Consensus        85 Y~C~~~~~~~   94 (109)
T cd04983          85 YFCALSESGG   94 (109)
T ss_pred             EEEEEecCCC
Confidence            9999997643

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.38  E-value=2.9e-06  Score=75.70  Aligned_cols=79  Identities=14%  Similarity=0.258  Sum_probs=56.9

Q ss_pred             cCCeEEEEEEEecCC------CCeEEEEECCE------E-e-ec----------CCcEEEEEeeCcEEEEEEccccCCCC
Q psy16863        762 VNEEFKFTVQVSISP------EPKVSWFRDDQ------Q-V-VE----------SDNVKILKETLGVCHLKIHALEVADQ  817 (1075)
Q Consensus       762 ~g~~~~l~C~v~g~p------~p~v~W~k~g~------~-i-~~----------~~~~~~~~~~~~~~~L~I~~~~~~D~  817 (1075)
                      .|++++|.|.....|      ...|.|+|...      . + ..          ..|+.+.....+..+|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            388999999988653      35799999641      1 1 10          12344332223456899999999999


Q ss_pred             eEEEEEEEeCCceEEEEEEEEEE
Q psy16863        818 AEWKCIATNDFGQSITSCFLKLN  840 (1075)
Q Consensus       818 G~Y~C~A~N~~G~~~~s~~l~V~  840 (1075)
                      |.|.|.+.|..|.....+.|.|.
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEE
Confidence            99999999988888777777765

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>PHA03376 BARF1; Provisional

Probab=98.34  E-value=3.6e-05  Score=71.29  Aligned_cols=133  Identities=13%  Similarity=0.059  Sum_probs=75.3

Q ss_pred             cceeeccceeEEEEEecCC---CceEEEEecC---CCeeeEEecCCCccc-c----CCCeEEEeeCCeEEEEEcccCCCC
Q psy16863        251 DIAVKVGTRARLLVEIRSP---TEIKCQFDLN---NTIPFSFRAQGDHPI-F----GNRFRAINRDGRTELNIRRVRRDD  319 (1075)
Q Consensus       251 ~~~v~~g~~~~l~c~~~~~---~~~~c~~~~~---~~~~~~w~~~~~~~~-~----~~~~~~~~~~~~~~L~I~~~~~~d  319 (1075)
                      .+.+..|+.+.|.|..++.   ..+...|...   .+..+..+ .++... .    ..++.+..+.++.+|.|.+++.+|
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~-~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSD   98 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGR-MHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISH   98 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEE-cCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecC
Confidence            3456789999999988732   2233333321   11122221 222211 1    223445556788899999999999


Q ss_pred             CEEEEEEEEeCCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCE
Q psy16863        320 GGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDR  388 (1075)
Q Consensus       320 ~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~  388 (1075)
                      .|+|+|...-........-.|++..    |..+...........-+..++.|...|.|.|.++|.-+..
T Consensus        99 dGtY~C~fQkge~~~~k~ehLt~V~----~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~  163 (221)
T PHA03376         99 DGNYLCRMKLGETEVTKQEHLSVVK----PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG  163 (221)
T ss_pred             CceEEEEEEcCCCceeeeeeeeeee----cceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence            9999999976433222222222221    1111111111122225567899998889999999997653

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.34  E-value=4.4e-06  Score=74.57  Aligned_cols=82  Identities=15%  Similarity=0.272  Sum_probs=55.8

Q ss_pred             ceeeeecCCeEEEEEEEecC----CCCeEEE---------------EECCEEeec-C----CcEEEEEe-eCcEEEEEEc
Q psy16863        756 KSCQATVNEEFKFTVQVSIS----PEPKVSW---------------FRDDQQVVE-S----DNVKILKE-TLGVCHLKIH  810 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g~----p~p~v~W---------------~k~g~~i~~-~----~~~~~~~~-~~~~~~L~I~  810 (1075)
                      ....+..|+.++|.|.....    +...|+|               |++|+.... .    +|+.+..+ ..+..+|.|.
T Consensus         6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~   85 (116)
T cd05879           6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH   85 (116)
T ss_pred             ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence            34568899999999999763    3458999               334444321 1    24443322 2346789999


Q ss_pred             cccCCCCeEEEEEEEeCCceEEEEEEE
Q psy16863        811 ALEVADQAEWKCIATNDFGQSITSCFL  837 (1075)
Q Consensus       811 ~~~~~D~G~Y~C~A~N~~G~~~~s~~l  837 (1075)
                      +++.+|.|.|+|.+.|.-+.......+
T Consensus        86 nv~~sD~G~Y~C~v~n~p~~~~~~~~~  112 (116)
T cd05879          86 NLDYTDNGTFTCDVKNPPDIVGKSSQV  112 (116)
T ss_pred             cCCcccCEEEEEEEEcCCCcCCceeEE
Confidence            999999999999999986643333333

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.33  E-value=1.8e-06  Score=77.52  Aligned_cols=73  Identities=15%  Similarity=0.235  Sum_probs=54.6

Q ss_pred             cceeeeecCCeEEEEEEEecCCCCeEEEEECCE--Eee----------------cCCcEEEEEeeCcEEEEEEccccCCC
Q psy16863        755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQ--QVV----------------ESDNVKILKETLGVCHLKIHALEVAD  816 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~--~i~----------------~~~~~~~~~~~~~~~~L~I~~~~~~D  816 (1075)
                      +....+.+|++++|.|.+.+ +.+.+.|||...  .+.                ...++.........++|.|.+++.+|
T Consensus         5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~D   83 (110)
T cd05899           5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPED   83 (110)
T ss_pred             CCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhh
Confidence            34466899999999999987 778999999531  110                12345544333356899999999999


Q ss_pred             CeEEEEEEEeCC
Q psy16863        817 QAEWKCIATNDF  828 (1075)
Q Consensus       817 ~G~Y~C~A~N~~  828 (1075)
                      +|.|.|.+.+..
T Consensus        84 sg~Y~Ca~~~~~   95 (110)
T cd05899          84 SAVYLCASSLGG   95 (110)
T ss_pred             CEEEEEEeeCCC
Confidence            999999998754

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.32  E-value=4.1e-06  Score=74.65  Aligned_cols=80  Identities=14%  Similarity=0.360  Sum_probs=56.8

Q ss_pred             cCCeEEEEEEEecCC------CCeEEEEECC-----E-Eee--cCCc------E--EEE--EeeCcEEEEEEccccCCCC
Q psy16863        762 VNEEFKFTVQVSISP------EPKVSWFRDD-----Q-QVV--ESDN------V--KIL--KETLGVCHLKIHALEVADQ  817 (1075)
Q Consensus       762 ~g~~~~l~C~v~g~p------~p~v~W~k~g-----~-~i~--~~~~------~--~~~--~~~~~~~~L~I~~~~~~D~  817 (1075)
                      .|++++|.|.....+      .+.|.|+|..     . .+.  .+..      +  ++.  ....+..+|+|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            388999999988654      4699999962     1 111  1111      1  111  1123567899999999999


Q ss_pred             eEEEEEEEeCCceEEEEEEEEEEe
Q psy16863        818 AEWKCIATNDFGQSITSCFLKLNV  841 (1075)
Q Consensus       818 G~Y~C~A~N~~G~~~~s~~l~V~~  841 (1075)
                      |.|.|.+.|..+.....+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999999888777777777753

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.30  E-value=4.5e-06  Score=73.54  Aligned_cols=77  Identities=23%  Similarity=0.390  Sum_probs=51.5

Q ss_pred             CCeEEEEEEEecCC---CCeEEEEECCE--Eee--c-------------CCcEEEEEe--eCcEEEEEEccccCCCCeEE
Q psy16863        763 NEEFKFTVQVSISP---EPKVSWFRDDQ--QVV--E-------------SDNVKILKE--TLGVCHLKIHALEVADQAEW  820 (1075)
Q Consensus       763 g~~~~l~C~v~g~p---~p~v~W~k~g~--~i~--~-------------~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y  820 (1075)
                      |+++.|.|......   ...+.|+|...  .+.  .             ..|+.+...  ..+..+|.|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            67899999986332   23688888541  110  0             023333221  23457899999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEE
Q psy16863        821 KCIATNDFGQSITSCFLKL  839 (1075)
Q Consensus       821 ~C~A~N~~G~~~~s~~l~V  839 (1075)
                      +|.+.|..+.....+.|+|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999998777666665554

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.30  E-value=3.5e-06  Score=75.70  Aligned_cols=74  Identities=19%  Similarity=0.292  Sum_probs=56.7

Q ss_pred             ecCceeeccCCeEEEEEEEecCCCcEEEEEECCE---ec-----------CCCCcEEEEEc--CCEEEEEEcccCCCCce
Q psy16863        355 RLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDR---KL-----------EENKIYRTQHD--GNFYFIDLSSVSLFDSG  418 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~---~l-----------~~~~~~~~~~~--g~~~~L~I~~v~~~d~G  418 (1075)
                      .+..+.+.+|++++|.|.+.+.+...+.|||...   +.           ....++.+..+  ...+.|.|.+++.+|+|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG   83 (109)
T cd04983           4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA   83 (109)
T ss_pred             cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence            4456789999999999999877788999998532   10           12345555433  36778999999999999


Q ss_pred             eEEEEEEeCC
Q psy16863        419 RWTCLAENAV  428 (1075)
Q Consensus       419 ~Y~C~a~n~~  428 (1075)
                      .|.|.+.+..
T Consensus        84 ~Y~C~~~~~~   93 (109)
T cd04983          84 VYFCALSESG   93 (109)
T ss_pred             EEEEEEecCC
Confidence            9999998764

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.27  E-value=5.2e-06  Score=67.92  Aligned_cols=75  Identities=12%  Similarity=0.275  Sum_probs=52.2

Q ss_pred             EEEEEEEec-CCCCeEEEEECCEEeecCCcEEEEEee--CcEEEEEEccccCCCCeEEEEEEEeCCce-EEEEEEEEEE
Q psy16863        766 FKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKET--LGVCHLKIHALEVADQAEWKCIATNDFGQ-SITSCFLKLN  840 (1075)
Q Consensus       766 ~~l~C~v~g-~p~p~v~W~k~g~~i~~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~-~~~s~~l~V~  840 (1075)
                      +.|.|.+.| .|.+.|+|||+|+++............  ...+.|.|..-..+|...|+|.|.|..=. ...+..|.|+
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~   80 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ   80 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence            679999886 689999999999999754321111111  12457899888899999999999997532 3344555554

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.25  E-value=3.4e-06  Score=75.25  Aligned_cols=71  Identities=17%  Similarity=0.276  Sum_probs=54.0

Q ss_pred             eeecCCeEEEEEEEecC-CCCeEEEEECCE-----Eee------------cCCcEEEEEeeC-cEEEEEEccccCCCCeE
Q psy16863        759 QATVNEEFKFTVQVSIS-PEPKVSWFRDDQ-----QVV------------ESDNVKILKETL-GVCHLKIHALEVADQAE  819 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~-p~p~v~W~k~g~-----~i~------------~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~  819 (1075)
                      .+..|++++|.|.+.+. +...+.|+|...     .+.            ...++.+..... +.++|+|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            46789999999999976 677999998532     111            123455444332 57899999999999999


Q ss_pred             EEEEEEeCCc
Q psy16863        820 WKCIATNDFG  829 (1075)
Q Consensus       820 Y~C~A~N~~G  829 (1075)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999998765

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.25  E-value=3e-06  Score=72.77  Aligned_cols=68  Identities=13%  Similarity=0.203  Sum_probs=55.1

Q ss_pred             CCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEecc------CCCEEEEEeCCCCCCCcEEEEEEEEec
Q psy16863        447 APFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK------AGDIFALTANPKDPSSLGTYTCEAVNC  515 (1075)
Q Consensus       447 ~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~------~~~~~~l~i~~~~~~d~G~Y~C~a~n~  515 (1075)
                      .|.+...+..++..|++|+|.|... .+...+.|+|+|....      .+....+.+..+..+|+|.|+|...|.
T Consensus         2 kP~L~a~p~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751           2 KPSLWAEPSSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CCEEEecCCCccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            3566666677789999999999885 5777999999988643      233457899999999999999999885

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.22  E-value=5.3e-06  Score=74.46  Aligned_cols=73  Identities=18%  Similarity=0.222  Sum_probs=54.7

Q ss_pred             ecCceeeccCCeEEEEEEEecCCCcEEEEEECCE--ec-------------C---CCCcEEEEEcC-CEEEEEEcccCCC
Q psy16863        355 RLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDR--KL-------------E---ENKIYRTQHDG-NFYFIDLSSVSLF  415 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~--~l-------------~---~~~~~~~~~~g-~~~~L~I~~v~~~  415 (1075)
                      .+..+.+.+|++++|.|.+.+ +...+.|||...  .+             .   ...++...... ..+.|.|.+++.+
T Consensus         4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~   82 (110)
T cd05899           4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPE   82 (110)
T ss_pred             CCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChh
Confidence            456678999999999999977 678999999532  11             0   12344444333 5678999999999


Q ss_pred             CceeEEEEEEeCC
Q psy16863        416 DSGRWTCLAENAV  428 (1075)
Q Consensus       416 d~G~Y~C~a~n~~  428 (1075)
                      |+|.|.|.+.+..
T Consensus        83 Dsg~Y~Ca~~~~~   95 (110)
T cd05899          83 DSAVYLCASSLGG   95 (110)
T ss_pred             hCEEEEEEeeCCC
Confidence            9999999998753

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.20  E-value=1.5e-05  Score=71.15  Aligned_cols=76  Identities=16%  Similarity=0.194  Sum_probs=52.7

Q ss_pred             cCceeeccCCeEEEEEEEecC----CCcEEEEE---------------ECCEecCC-C----CcEEEEEc--CCEEEEEE
Q psy16863        356 LHDIAVKVGTRARLLVEIRSP----TEIKIHWY---------------RNDRKLEE-N----KIYRTQHD--GNFYFIDL  409 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~----p~~~v~W~---------------k~g~~l~~-~----~~~~~~~~--g~~~~L~I  409 (1075)
                      +..+.+..|+.++|.|.+...    +...|+|.               ++|..... .    .|+.+..+  .....|.|
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I   84 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI   84 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence            355678899999999999653    34699993               34443321 1    24433321  23357899


Q ss_pred             cccCCCCceeEEEEEEeCCCce
Q psy16863        410 SSVSLFDSGRWTCLAENAVGRS  431 (1075)
Q Consensus       410 ~~v~~~d~G~Y~C~a~n~~g~~  431 (1075)
                      .+++.+|+|.|+|.+.|..+..
T Consensus        85 ~nv~~sD~G~Y~C~v~n~p~~~  106 (116)
T cd05879          85 HNLDYTDNGTFTCDVKNPPDIV  106 (116)
T ss_pred             ccCCcccCEEEEEEEEcCCCcC
Confidence            9999999999999999987644

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.20  E-value=2.7e-06  Score=70.36  Aligned_cols=73  Identities=19%  Similarity=0.307  Sum_probs=48.3

Q ss_pred             CeeeeecCceeeccCCeEEEEEEEecCC-CcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEe
Q psy16863        350 PAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       350 p~~~~~~~~~~v~~G~~v~l~C~~~g~p-~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      |.+...+.......+. ++|.|.+.+.+ .+.++|+ +......  ............|.|.++..+|.|.|+|.|+|
T Consensus         2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~--~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFN--SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEE--EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCcee--eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            5555554444444444 99999998876 8899999 1111111  11122233345799999999999999999987

...

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.19  E-value=9.4e-06  Score=71.87  Aligned_cols=79  Identities=13%  Similarity=0.269  Sum_probs=54.4

Q ss_pred             cCCeEEEEEEEecCC------------CCeEEEEEC--CE---Eee-c------C----CcEEEEEe--eCcEEEEEEcc
Q psy16863        762 VNEEFKFTVQVSISP------------EPKVSWFRD--DQ---QVV-E------S----DNVKILKE--TLGVCHLKIHA  811 (1075)
Q Consensus       762 ~g~~~~l~C~v~g~p------------~p~v~W~k~--g~---~i~-~------~----~~~~~~~~--~~~~~~L~I~~  811 (1075)
                      .|++++|.|.....+            .+.|.|+|-  |+   .+. .      .    +|+.+...  ..+..+|+|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            488999999987543            469999984  21   111 1      0    24444321  33567999999


Q ss_pred             ccCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy16863        812 LEVADQAEWKCIATNDFGQSITSCFLKLN  840 (1075)
Q Consensus       812 ~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~  840 (1075)
                      ++.+|+|.|.|.+.+..........|.|.
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence            99999999999999876666555555554

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.19  E-value=9.6e-06  Score=70.86  Aligned_cols=70  Identities=17%  Similarity=0.149  Sum_probs=49.9

Q ss_pred             CceeeccCCeEEEEEEEecCCCcEEEEEECCE-----ec----C----------CCCcEEEEEcCCEEEEEEcccCCCCc
Q psy16863        357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDR-----KL----E----------ENKIYRTQHDGNFYFIDLSSVSLFDS  417 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~-----~l----~----------~~~~~~~~~~g~~~~L~I~~v~~~d~  417 (1075)
                      .+..+.+|+++.|.|.....+...++|||+..     .+    .          -+.|..+..+|   .|.|.+++.+|+
T Consensus         6 ~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng---SL~I~~v~~~D~   82 (105)
T cd05774           6 VPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG---SLLIQNVTQKDT   82 (105)
T ss_pred             cCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC---cEEEecCCcccC
Confidence            34567899999999976434455999999632     11    0          12333444444   488999999999


Q ss_pred             eeEEEEEEeCCC
Q psy16863        418 GRWTCLAENAVG  429 (1075)
Q Consensus       418 G~Y~C~a~n~~g  429 (1075)
                      |.|+|.+.+...
T Consensus        83 G~Y~~~v~~~~~   94 (105)
T cd05774          83 GFYTLQTITTNF   94 (105)
T ss_pred             EEEEEEEEeCCc
Confidence            999999998763

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.18  E-value=1.4e-05  Score=65.43  Aligned_cols=74  Identities=14%  Similarity=0.149  Sum_probs=49.2

Q ss_pred             EEEEEEEec-CCCcEEEEEECCEecCCCCcEEEEE-cC--CEEEEEEcccCCCCceeEEEEEEeCCCc-eeeEEEEEee
Q psy16863        367 ARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQH-DG--NFYFIDLSSVSLFDSGRWTCLAENAVGR-SHCSCELSVL  440 (1075)
Q Consensus       367 v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~~~~~~-~g--~~~~L~I~~v~~~d~G~Y~C~a~n~~g~-~~~s~~l~V~  440 (1075)
                      +.|.|.+.| .|++.|+|||+|.++.......... .+  ..++|.|..-..+|...|+|+|.|.+-. ...+..|.|.
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~   80 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ   80 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence            689999854 7899999999999997653322222 22  3457777655555555999999997632 2344455543

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.17  E-value=8.1e-06  Score=71.32  Aligned_cols=75  Identities=13%  Similarity=0.095  Sum_probs=50.3

Q ss_pred             eeecCCeEEEEEEEecCCCCeEEEEECCE-----Eee---c-----------CCcEEEEEeeCcEEEEEEccccCCCCeE
Q psy16863        759 QATVNEEFKFTVQVSISPEPKVSWFRDDQ-----QVV---E-----------SDNVKILKETLGVCHLKIHALEVADQAE  819 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p~p~v~W~k~g~-----~i~---~-----------~~~~~~~~~~~~~~~L~I~~~~~~D~G~  819 (1075)
                      .+.+|+++.|.|...-.+...++|||+..     .|.   .           +.|..+..  +  .+|.|.+++.+|+|.
T Consensus         9 ~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~--n--gSL~I~~v~~~D~G~   84 (105)
T cd05774           9 QVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYP--N--GSLLIQNVTQKDTGF   84 (105)
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeC--C--CcEEEecCCcccCEE
Confidence            47799999999875433344999999632     221   1           12333322  2  279999999999999


Q ss_pred             EEEEEEeCCc-eEEEEEEE
Q psy16863        820 WKCIATNDFG-QSITSCFL  837 (1075)
Q Consensus       820 Y~C~A~N~~G-~~~~s~~l  837 (1075)
                      |+|.+.|..+ .......|
T Consensus        85 Y~~~v~~~~~~~~~~~v~l  103 (105)
T cd05774          85 YTLQTITTNFQVEQATVHL  103 (105)
T ss_pred             EEEEEEeCCccEEEEEEEE
Confidence            9999999763 33334433

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.17  E-value=1e-05  Score=71.05  Aligned_cols=76  Identities=16%  Similarity=0.318  Sum_probs=51.8

Q ss_pred             CeEEEEEEEecCC---CCeEEEEECCEE----e-----------ec--CCcEEEEEeeCcEEEEEEccccCCCCeEEEEE
Q psy16863        764 EEFKFTVQVSISP---EPKVSWFRDDQQ----V-----------VE--SDNVKILKETLGVCHLKIHALEVADQAEWKCI  823 (1075)
Q Consensus       764 ~~~~l~C~v~g~p---~p~v~W~k~g~~----i-----------~~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~  823 (1075)
                      ++++|.|.....+   ...|.|+|....    +           ..  ..+..+.....+...|.|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4689999998754   447999996421    1           01  11222221112457899999999999999999


Q ss_pred             EEe-CCceEEEEEEEEE
Q psy16863        824 ATN-DFGQSITSCFLKL  839 (1075)
Q Consensus       824 A~N-~~G~~~~s~~l~V  839 (1075)
                      +.+ ..|.......|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            875 6677777776665

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.14  E-value=9.8e-06  Score=72.27  Aligned_cols=70  Identities=21%  Similarity=0.348  Sum_probs=53.2

Q ss_pred             eeccCCeEEEEEEEecC-CCcEEEEEECCE-----ec------------CCCCcEEEEEcC--CEEEEEEcccCCCCcee
Q psy16863        360 AVKVGTRARLLVEIRSP-TEIKIHWYRNDR-----KL------------EENKIYRTQHDG--NFYFIDLSSVSLFDSGR  419 (1075)
Q Consensus       360 ~v~~G~~v~l~C~~~g~-p~~~v~W~k~g~-----~l------------~~~~~~~~~~~g--~~~~L~I~~v~~~d~G~  419 (1075)
                      .+.+|++++|.|.+.+. +...+.|||...     .+            ....++.+..+.  ....|+|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            57899999999999876 678999999542     11            112345444443  56789999999999999


Q ss_pred             EEEEEEeCCC
Q psy16863        420 WTCLAENAVG  429 (1075)
Q Consensus       420 Y~C~a~n~~g  429 (1075)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999988754

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.14  E-value=1.1e-05  Score=71.90  Aligned_cols=74  Identities=15%  Similarity=0.285  Sum_probs=54.8

Q ss_pred             eecCceeeccCCeEEEEEEEecCC-CcEEEEEECC--Ee---cC---------CCCcEEEEEcCCEEEEEEcccCCCCce
Q psy16863        354 RRLHDIAVKVGTRARLLVEIRSPT-EIKIHWYRND--RK---LE---------ENKIYRTQHDGNFYFIDLSSVSLFDSG  418 (1075)
Q Consensus       354 ~~~~~~~v~~G~~v~l~C~~~g~p-~~~v~W~k~g--~~---l~---------~~~~~~~~~~g~~~~L~I~~v~~~d~G  418 (1075)
                      ..+..+.+.+|++++|.|.+.+.. ...+.|||..  ..   |.         ...++.....+....|.|.++..+|+|
T Consensus         5 Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg   84 (106)
T cd04980           5 QSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAA   84 (106)
T ss_pred             ECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCE
Confidence            345667889999999999996654 5789999843  11   10         113555555556678999999999999


Q ss_pred             eEEEEEEeC
Q psy16863        419 RWTCLAENA  427 (1075)
Q Consensus       419 ~Y~C~a~n~  427 (1075)
                      .|.|.+.+.
T Consensus        85 ~Y~Ca~~~~   93 (106)
T cd04980          85 VYYCQQYGT   93 (106)
T ss_pred             EEEEEEeCC
Confidence            999998653

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.13  E-value=1.7e-05  Score=70.25  Aligned_cols=77  Identities=14%  Similarity=0.248  Sum_probs=51.8

Q ss_pred             cCCeEEEEEEEecCC------------CcEEEEEEC--CEe---c---------CC--CCcEEEEE---cCCEEEEEEcc
Q psy16863        363 VGTRARLLVEIRSPT------------EIKIHWYRN--DRK---L---------EE--NKIYRTQH---DGNFYFIDLSS  411 (1075)
Q Consensus       363 ~G~~v~l~C~~~g~p------------~~~v~W~k~--g~~---l---------~~--~~~~~~~~---~g~~~~L~I~~  411 (1075)
                      .|++++|.|......            .+.|.|+|-  |.+   +         .+  ..|+.+..   ......|+|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            489999999986432            469999984  211   1         00  12444433   22446799999


Q ss_pred             cCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863        412 VSLFDSGRWTCLAENAVGRSHCSCELSV  439 (1075)
Q Consensus       412 v~~~d~G~Y~C~a~n~~g~~~~s~~l~V  439 (1075)
                      ++.+|+|.|.|.+.+..........|.|
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v  108 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQV  108 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEE
Confidence            9999999999999976555555555544

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.12  E-value=1.8e-05  Score=71.24  Aligned_cols=75  Identities=19%  Similarity=0.215  Sum_probs=50.4

Q ss_pred             cCceeeccCCeEEEEEEEecCC----CcEEEEEEC----CEe--c---C------CCC----cEEEEE--cCCEEEEEEc
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPT----EIKIHWYRN----DRK--L---E------ENK----IYRTQH--DGNFYFIDLS  410 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p----~~~v~W~k~----g~~--l---~------~~~----~~~~~~--~g~~~~L~I~  410 (1075)
                      +..+.+.+|++++|.|.....+    ...|.||+.    +.+  +   .      ...    |+.+..  ......|+|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            4567889999999999986433    247999852    211  1   0      111    222111  1234569999


Q ss_pred             ccCCCCceeEEEEEEeCCCc
Q psy16863        411 SVSLFDSGRWTCLAENAVGR  430 (1075)
Q Consensus       411 ~v~~~d~G~Y~C~a~n~~g~  430 (1075)
                      +++.+|+|.|+|.+.|..+.
T Consensus        85 ~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          85 QLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             eCChhhCEEEEEEEEeCCCC
Confidence            99999999999999987654

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.11  E-value=1.9e-05  Score=70.31  Aligned_cols=78  Identities=14%  Similarity=0.212  Sum_probs=54.6

Q ss_pred             cCCeEEEEEEEecCC------CcEEEEEECCE----e---c-CC----------CCcEEEEEc-CCEEEEEEcccCCCCc
Q psy16863        363 VGTRARLLVEIRSPT------EIKIHWYRNDR----K---L-EE----------NKIYRTQHD-GNFYFIDLSSVSLFDS  417 (1075)
Q Consensus       363 ~G~~v~l~C~~~g~p------~~~v~W~k~g~----~---l-~~----------~~~~~~~~~-g~~~~L~I~~v~~~d~  417 (1075)
                      .|++++|.|.+...|      ...|.|+|...    .   + ..          ..|+.+... .....|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            489999999986652      45899999641    0   1 10          123333221 2345799999999999


Q ss_pred             eeEEEEEEeCCCceeeEEEEEee
Q psy16863        418 GRWTCLAENAVGRSHCSCELSVL  440 (1075)
Q Consensus       418 G~Y~C~a~n~~g~~~~s~~l~V~  440 (1075)
                      |.|.|.+.+..+.......|.|.
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEE
Confidence            99999999988877767666664

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.11  E-value=2.4e-05  Score=69.65  Aligned_cols=78  Identities=19%  Similarity=0.296  Sum_probs=53.9

Q ss_pred             cCCeEEEEEEEecCC------CcEEEEEECC-----E-ec--CCCCc--------EEEE---EcCCEEEEEEcccCCCCc
Q psy16863        363 VGTRARLLVEIRSPT------EIKIHWYRND-----R-KL--EENKI--------YRTQ---HDGNFYFIDLSSVSLFDS  417 (1075)
Q Consensus       363 ~G~~v~l~C~~~g~p------~~~v~W~k~g-----~-~l--~~~~~--------~~~~---~~g~~~~L~I~~v~~~d~  417 (1075)
                      .|++++|.|.....+      ...|.|+|..     . .+  ..+..        .+..   .......|+|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            489999999987643      5699999962     1 11  01111        1111   123446799999999999


Q ss_pred             eeEEEEEEeCCCceeeEEEEEee
Q psy16863        418 GRWTCLAENAVGRSHCSCELSVL  440 (1075)
Q Consensus       418 G~Y~C~a~n~~g~~~~s~~l~V~  440 (1075)
                      |.|.|.+.+..+.......|.|.
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~  103 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVR  103 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEE
Confidence            99999999887766667666664

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.10  E-value=2.3e-05  Score=68.79  Aligned_cols=75  Identities=16%  Similarity=0.238  Sum_probs=51.1

Q ss_pred             CeEEEEEEEecCC---CcEEEEEECCEe----c-----------CC--CCcEEEEEcC-CEEEEEEcccCCCCceeEEEE
Q psy16863        365 TRARLLVEIRSPT---EIKIHWYRNDRK----L-----------EE--NKIYRTQHDG-NFYFIDLSSVSLFDSGRWTCL  423 (1075)
Q Consensus       365 ~~v~l~C~~~g~p---~~~v~W~k~g~~----l-----------~~--~~~~~~~~~g-~~~~L~I~~v~~~d~G~Y~C~  423 (1075)
                      ++|+|.|.....+   ...|.|+|....    +           .+  ..|..+..+. ....|+|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4789999997654   458999996531    0           11  1122222111 345799999999999999999


Q ss_pred             EEe-CCCceeeEEEEEe
Q psy16863        424 AEN-AVGRSHCSCELSV  439 (1075)
Q Consensus       424 a~n-~~g~~~~s~~l~V  439 (1075)
                      +.+ ..|.......|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            875 5677777777766

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.09  E-value=2.1e-05  Score=65.86  Aligned_cols=64  Identities=20%  Similarity=0.284  Sum_probs=45.0

Q ss_pred             EEEEEEEecC-CCCeEEEEECCEEeecCCcEEEEEeeCc----EEEEEEccccCCCCeEEEEEEEeCCce
Q psy16863        766 FKFTVQVSIS-PEPKVSWFRDDQQVVESDNVKILKETLG----VCHLKIHALEVADQAEWKCIATNDFGQ  830 (1075)
Q Consensus       766 ~~l~C~v~g~-p~p~v~W~k~g~~i~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~~G~  830 (1075)
                      +.|.|.+.+. |.+.|+|+|+|+++.... .......++    ...|.+.....+|.+.|+|.|.|....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            6799999875 889999999999986432 111111112    235666666677788999999998654

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.08  E-value=1.4e-05  Score=72.60  Aligned_cols=70  Identities=20%  Similarity=0.308  Sum_probs=53.1

Q ss_pred             eeeeecCCeEEEEEEEec--CCCCeEEEEEC--CE-E---e--e-----------cCCcEEEEEeeC-cEEEEEEccccC
Q psy16863        757 SCQATVNEEFKFTVQVSI--SPEPKVSWFRD--DQ-Q---V--V-----------ESDNVKILKETL-GVCHLKIHALEV  814 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~g--~p~p~v~W~k~--g~-~---i--~-----------~~~~~~~~~~~~-~~~~L~I~~~~~  814 (1075)
                      .+.+.+|++++|.|.+.+  .+.+.+.|||.  |. +   +  .           ...++.+..... ..+.|+|.+++.
T Consensus         7 ~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~   86 (116)
T cd04982           7 SITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEK   86 (116)
T ss_pred             eEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCH
Confidence            355889999999999987  67889999994  22 1   1  0           134566554432 578999999999


Q ss_pred             CCCeEEEEEEEe
Q psy16863        815 ADQAEWKCIATN  826 (1075)
Q Consensus       815 ~D~G~Y~C~A~N  826 (1075)
                      +|+|.|.|.+..
T Consensus        87 ~Dsg~Y~C~~~~   98 (116)
T cd04982          87 EDSATYYCAYWE   98 (116)
T ss_pred             HHCEEEEEEEec
Confidence            999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.07  E-value=1.1e-05  Score=70.29  Aligned_cols=70  Identities=11%  Similarity=0.288  Sum_probs=52.1

Q ss_pred             ecCCeEEEEEEEecC-C-CCeEEEEECCEEeecCCc-EEEEEeeCc----EEEEEEccccCCCCeEEEEEEEeCCce
Q psy16863        761 TVNEEFKFTVQVSIS-P-EPKVSWFRDDQQVVESDN-VKILKETLG----VCHLKIHALEVADQAEWKCIATNDFGQ  830 (1075)
Q Consensus       761 ~~g~~~~l~C~v~g~-p-~p~v~W~k~g~~i~~~~~-~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~~G~  830 (1075)
                      ..|+.+.|.|.+.|. | .+.|+|+|||.++..... .......++    .+.|.|......|.|.|+|.|.|....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            368899999999997 6 468999999999865543 223333333    235777777778999999999997553

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.07  E-value=3e-05  Score=69.11  Aligned_cols=79  Identities=16%  Similarity=0.408  Sum_probs=55.1

Q ss_pred             cCCeEEEEEEEecCC----------CCeEEEEEC--CEEee----c------C----CcEEEEE--eeCcEEEEEEcccc
Q psy16863        762 VNEEFKFTVQVSISP----------EPKVSWFRD--DQQVV----E------S----DNVKILK--ETLGVCHLKIHALE  813 (1075)
Q Consensus       762 ~g~~~~l~C~v~g~p----------~p~v~W~k~--g~~i~----~------~----~~~~~~~--~~~~~~~L~I~~~~  813 (1075)
                      .|++++|.|.....+          ...|.|+|.  ++.+.    .      .    +|+.+..  ...+..+|+|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            388999999998654          257999995  22211    0      1    2333321  12356789999999


Q ss_pred             CCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy16863        814 VADQAEWKCIATNDFGQSITSCFLKLN  840 (1075)
Q Consensus       814 ~~D~G~Y~C~A~N~~G~~~~s~~l~V~  840 (1075)
                      .+|+|.|.|.+............|.|.
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~  107 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVT  107 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence            999999999999876666667777765

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.05  E-value=1.3e-05  Score=69.32  Aligned_cols=65  Identities=18%  Similarity=0.283  Sum_probs=47.7

Q ss_pred             CCeEEEEEEEecCCCCeEEEEECCEEeec------------------CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEE
Q psy16863        763 NEEFKFTVQVSISPEPKVSWFRDDQQVVE------------------SDNVKILKETLGVCHLKIHALEVADQAEWKCIA  824 (1075)
Q Consensus       763 g~~~~l~C~v~g~p~p~v~W~k~g~~i~~------------------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A  824 (1075)
                      |++|+|.|.+...+...|.|+|+......                  ..++.+.  .  ...|.|.+++.+|+|.|+|.+
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~--~--~~sL~I~~l~~~DsG~Y~c~v   76 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY--P--NGSLLIQNLTKEDSGTYTLQI   76 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc--C--CceEEEccCCchhcEEEEEEE
Confidence            78999999988766779999997632210                  0122221  2  258999999999999999999


Q ss_pred             EeCCceE
Q psy16863        825 TNDFGQS  831 (1075)
Q Consensus       825 ~N~~G~~  831 (1075)
                      .+..|..
T Consensus        77 ~~~~~~~   83 (92)
T cd05741          77 ISTNGVT   83 (92)
T ss_pred             EcCCCcE
Confidence            9887543

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>KOG0613|consensus

Probab=98.04  E-value=2.6e-05  Score=93.34  Aligned_cols=254  Identities=12%  Similarity=0.031  Sum_probs=151.5

Q ss_pred             cCCeEEEEEEEecCCCCeEEEEECCEEcCCC----CeEEEe--ecCCCceEEEEEEecCceEEEEEEEEEEeccccCchh
Q psy16863        664 DDGLVSFECKVVGFPTPTLQWFKDNEELKPG----DVYQLT--GTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEE  737 (1075)
Q Consensus       664 ~g~~~~l~C~v~g~p~p~v~W~k~g~~l~~~----~~~~~~--~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~~~~  737 (1075)
                      ++....+.|.+.+.+.+...|+.+.......    ..+.+.  +..+.+.|+|...+..|.....+.-.+..........
T Consensus       243 e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~  322 (1205)
T KOG0613|consen  243 EASDRKIQLTLRAPRGPYSAHILGYLIEQRKHKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPE  322 (1205)
T ss_pred             chhheeeeEEeecCCCchHHHHhcchhhhcccCCCccccccccCCccccceeeecccCCcccceeeeEEeeccccccCch
Confidence            3345566666666666666666544332221    122221  2245688999999988888776655554332221111


Q ss_pred             h-hhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecCCCCe-EEEEECCEEeecCCcEEEEE-eeCcEEEEEEccccC
Q psy16863        738 D-KLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPK-VSWFRDDQQVVESDNVKILK-ETLGVCHLKIHALEV  814 (1075)
Q Consensus       738 ~-~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~-v~W~k~g~~i~~~~~~~~~~-~~~~~~~L~I~~~~~  814 (1075)
                      . ...+......|.+.....++.+..+..+.+.|...+.+.|. +.||+++.....+....... .......+.|..+.+
T Consensus       323 ~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~  402 (1205)
T KOG0613|consen  323 SLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGP  402 (1205)
T ss_pred             hhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCc
Confidence            1 11111111233333344556777888999999999999886 99999987766554222211 122245789999999


Q ss_pred             CCCeEEEEEEEeCCceEEEEEEEEEEecC-CCCCCeeeeeccee--ecCCCeEEEEEEEEccCC--CeeEEEECCEEcCC
Q psy16863        815 ADQAEWKCIATNDFGQSITSCFLKLNVPK-HYKKPKFLEELKAV--LSEGGAVNLECKVIGVPQ--PTLKWFKDGRELKA  889 (1075)
Q Consensus       815 ~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~-~~~~p~~~~~~~~~--~~~g~~~~L~C~v~g~p~--p~v~W~k~g~~l~~  889 (1075)
                      .+.+.|.|.|.|..|.........|.... ...++.+.......  +..-+.+.+.|.+.+.|.  ..++|++++.+...
T Consensus       403 ~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~  482 (1205)
T KOG0613|consen  403 GEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSD  482 (1205)
T ss_pred             ccccccccceeccCCcccccchhhcccccCCCCCccccccccccccccCCcccccccCCCCccccceeEeeccCCccccc
Confidence            99999999999999998776666665543 33333333332222  223368999999988884  45677888765432


Q ss_pred             -------CCeeEEEECCCCceeeEEEEEEEEeCCe
Q psy16863        890 -------GDIHKIISGEDGTCCLGIYTCEAHNCMG  917 (1075)
Q Consensus       890 -------~~~~~i~~~~~~~~d~G~Y~C~a~N~~G  917 (1075)
                             +...++........+.|.|.-...-..|
T Consensus       483 ~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~~~  517 (1205)
T KOG0613|consen  483 RSVTLTRDVLTSLLLKVASLSDGAQYTRALRTLQG  517 (1205)
T ss_pred             ccccccccchhhheeeccCCCccchhhhhhhccCC
Confidence                   2223333344455667888655444333

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.03  E-value=1.6e-05  Score=68.49  Aligned_cols=70  Identities=17%  Similarity=0.229  Sum_probs=50.0

Q ss_pred             ecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEE
Q psy16863        355 RLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAE  425 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~  425 (1075)
                      .++...|.+|++|+|.|.... +...+.|||+|..............+....+.|.+++.+|+|.|.|...
T Consensus         6 a~p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711           6 AHPSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             ecCCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            345667889999999998754 4568999999975332110011123334578999999999999999975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.02  E-value=4.2e-05  Score=64.03  Aligned_cols=64  Identities=19%  Similarity=0.309  Sum_probs=46.7

Q ss_pred             EEEEEEEecC-CCCeEEEEECCEEeecCCcEEEEEeeC-cE----EEEEEccccCCCCeEEEEEEEeCCce
Q psy16863        766 FKFTVQVSIS-PEPKVSWFRDDQQVVESDNVKILKETL-GV----CHLKIHALEVADQAEWKCIATNDFGQ  830 (1075)
Q Consensus       766 ~~l~C~v~g~-p~p~v~W~k~g~~i~~~~~~~~~~~~~-~~----~~L~I~~~~~~D~G~Y~C~A~N~~G~  830 (1075)
                      +.|.|.+.|. |.+.|+|+|||+++..... .+....+ ++    ..|.|.....+|...|+|.|.+....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            6799999985 9999999999998865432 2322322 22    35666666778889999999997643

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.01  E-value=2.3e-05  Score=71.21  Aligned_cols=71  Identities=15%  Similarity=0.290  Sum_probs=54.5

Q ss_pred             cCceeeccCCeEEEEEEEec--CCCcEEEEEEC--CEec-----------------CCCCcEEEEEcC--CEEEEEEccc
Q psy16863        356 LHDIAVKVGTRARLLVEIRS--PTEIKIHWYRN--DRKL-----------------EENKIYRTQHDG--NFYFIDLSSV  412 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g--~p~~~v~W~k~--g~~l-----------------~~~~~~~~~~~g--~~~~L~I~~v  412 (1075)
                      +..+.+.+|++++|.|.+.+  .+...+.|||.  |..+                 ....++.+..++  ....|+|.++
T Consensus         5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~   84 (116)
T cd04982           5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL   84 (116)
T ss_pred             CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence            34567889999999999977  56789999994  2211                 013466666555  6788999999


Q ss_pred             CCCCceeEEEEEEe
Q psy16863        413 SLFDSGRWTCLAEN  426 (1075)
Q Consensus       413 ~~~d~G~Y~C~a~n  426 (1075)
                      +.+|+|.|.|.+..
T Consensus        85 ~~~Dsg~Y~C~~~~   98 (116)
T cd04982          85 EKEDSATYYCAYWE   98 (116)
T ss_pred             CHHHCEEEEEEEec
Confidence            99999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.01  E-value=2.8e-05  Score=66.55  Aligned_cols=73  Identities=12%  Similarity=0.172  Sum_probs=50.8

Q ss_pred             eeeecCCeEEEEEEEec-CCCCe--EEEEECCEEeecCCcEEE-EEeeCcEEEEEEccccCCCCeEEEEEEEeCCce
Q psy16863        758 CQATVNEEFKFTVQVSI-SPEPK--VSWFRDDQQVVESDNVKI-LKETLGVCHLKIHALEVADQAEWKCIATNDFGQ  830 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g-~p~p~--v~W~k~g~~i~~~~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~  830 (1075)
                      ..+.+|+.++|+|.+.| .|.+.  |+|||+++.+........ ........+|++..-..+|.-.|+|.|.+.++.
T Consensus        11 ~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~   87 (100)
T cd05755          11 SWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP   87 (100)
T ss_pred             CcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence            34679999999999997 57776  799999999864321110 001112456777755566666999999998765

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.00  E-value=5e-05  Score=65.61  Aligned_cols=75  Identities=15%  Similarity=0.274  Sum_probs=51.2

Q ss_pred             eEEEEEEEecC-CCC---eEEEEECC--E--Ee--ec-----------CCcEEEEEeeCcEEEEEEccccCCCCeEEEEE
Q psy16863        765 EFKFTVQVSIS-PEP---KVSWFRDD--Q--QV--VE-----------SDNVKILKETLGVCHLKIHALEVADQAEWKCI  823 (1075)
Q Consensus       765 ~~~l~C~v~g~-p~p---~v~W~k~g--~--~i--~~-----------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~  823 (1075)
                      .++|.|..... |..   .|+|.|..  .  .+  ..           .+|..+.....+..+|.|.+++.+|+|.|+|.
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~   81 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE   81 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence            57899998842 222   69998842  1  11  11           12333332233456899999999999999999


Q ss_pred             EEe-CCceEEEEEEEEE
Q psy16863        824 ATN-DFGQSITSCFLKL  839 (1075)
Q Consensus       824 A~N-~~G~~~~s~~l~V  839 (1075)
                      +.| ..|..+..+.|.|
T Consensus        82 v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          82 FATFPTGNRESQLNLTV   98 (99)
T ss_pred             EEeCCCCCeEEEEEEEE
Confidence            999 7787777777766

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.00  E-value=4.6e-05  Score=66.65  Aligned_cols=75  Identities=16%  Similarity=0.305  Sum_probs=50.7

Q ss_pred             eEEEEEEEecCC---CCeEEEEECC---E--Eee---c----------CCcEEEEEe-eCcEEEEEEccccCCCCeEEEE
Q psy16863        765 EFKFTVQVSISP---EPKVSWFRDD---Q--QVV---E----------SDNVKILKE-TLGVCHLKIHALEVADQAEWKC  822 (1075)
Q Consensus       765 ~~~l~C~v~g~p---~p~v~W~k~g---~--~i~---~----------~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C  822 (1075)
                      +++|.|.....+   ...|.|+|..   +  .+.   .          .+|..+... ..+..+|+|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            588999987544   3489999842   1  111   0          023344322 2345689999999999999999


Q ss_pred             EEEe-CCceEEEEEEEEE
Q psy16863        823 IATN-DFGQSITSCFLKL  839 (1075)
Q Consensus       823 ~A~N-~~G~~~~s~~l~V  839 (1075)
                      .+.| ..|..+....|.|
T Consensus        82 ~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEeCCCCCeeeEEEEEe
Confidence            9998 6676655666655

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.00  E-value=2.6e-05  Score=67.81  Aligned_cols=70  Identities=9%  Similarity=0.219  Sum_probs=49.6

Q ss_pred             ecCCeEEEEEEEec-CCCCeEEEEECCEEee-cC------------CcE--EEEEeeCcEEEEEEccccCCCCeEEEEEE
Q psy16863        761 TVNEEFKFTVQVSI-SPEPKVSWFRDDQQVV-ES------------DNV--KILKETLGVCHLKIHALEVADQAEWKCIA  824 (1075)
Q Consensus       761 ~~g~~~~l~C~v~g-~p~p~v~W~k~g~~i~-~~------------~~~--~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A  824 (1075)
                      ..|++|+|.|.... .....+.|+|....+. ..            .++  ++.. ..+...|+|.+++.+|+|.|.|.+
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~-~~~~~sL~I~~~~~~DsG~Y~c~v   80 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNF-SQNDYSLQISNLKMEDAGSYRAEI   80 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEe-cCCceeEEECCCchHHCEEEEEEE
Confidence            36999999998864 4456899999754321 11            111  1111 233578999999999999999999


Q ss_pred             EeCCceE
Q psy16863        825 TNDFGQS  831 (1075)
Q Consensus       825 ~N~~G~~  831 (1075)
                      .+..|..
T Consensus        81 ~~~~~~~   87 (97)
T cd05775          81 NTKNGVT   87 (97)
T ss_pred             EcCCCCe
Confidence            9987764

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=97.99  E-value=3.4e-05  Score=69.85  Aligned_cols=75  Identities=16%  Similarity=0.291  Sum_probs=49.8

Q ss_pred             ceeeeecCCeEEEEEEEecCC----CCeEEEEECCE------Eee----------cCCc----EEEEEe-eCcEEEEEEc
Q psy16863        756 KSCQATVNEEFKFTVQVSISP----EPKVSWFRDDQ------QVV----------ESDN----VKILKE-TLGVCHLKIH  810 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g~p----~p~v~W~k~g~------~i~----------~~~~----~~~~~~-~~~~~~L~I~  810 (1075)
                      ....+..|++++|.|......    ...+.|++...      .+.          ...+    +.+... ..+...|+|.
T Consensus         6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   85 (116)
T cd05715           6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIH   85 (116)
T ss_pred             CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEe
Confidence            345688999999999987532    25699986321      110          1112    222111 1235789999


Q ss_pred             cccCCCCeEEEEEEEeCCce
Q psy16863        811 ALEVADQAEWKCIATNDFGQ  830 (1075)
Q Consensus       811 ~~~~~D~G~Y~C~A~N~~G~  830 (1075)
                      +++.+|+|.|.|.+.|.-+.
T Consensus        86 ~v~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          86 NLQFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             eCCcccCEEEEEEEEeCCCC
Confidence            99999999999999987543

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=97.99  E-value=5.2e-05  Score=67.52  Aligned_cols=87  Identities=16%  Similarity=0.231  Sum_probs=54.8

Q ss_pred             CCeEEEEEEecCCC----------eeEEEEcc---CCCeeEEEeeCCCce---eccCcEEEE---ecCCeEEEEEceecc
Q psy16863        150 GTRARLLVEIRSPT----------EIKCQFDL---NNTIPFSFRAQGDHP---IFGNRFRAI---NRDGRTELNIRRVRR  210 (1075)
Q Consensus       150 G~~~~l~c~~~~~~----------~~~c~~~~---~~~~~~~W~~~~~~~---~~~~~~~~~---~~~~~~~L~I~~~~~  210 (1075)
                      |++++|+|......          .....|..   ...+.+.++.++...   ...+|+.+.   ...+...|+|.+++.
T Consensus         2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~   81 (110)
T cd05878           2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS   81 (110)
T ss_pred             CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence            78999999887532          12233321   112233333333211   123455543   234667899999999


Q ss_pred             CCCeEEEEEEEcCceeEEEEEEEeee
Q psy16863        211 DDGGRYSVTASNESGYSTAKFELSVE  236 (1075)
Q Consensus       211 ~D~G~Y~C~a~n~~g~~~~~~~l~V~  236 (1075)
                      +|+|.|.|.+.......+..+.|.|.
T Consensus        82 sD~G~Y~C~v~~~~~~~~~~v~l~V~  107 (110)
T cd05878          82 SDSGVYRCEVMHGIEDEQDTVPLEVT  107 (110)
T ss_pred             hhCEEEEEEEEeCCCcceEEEEEEEE
Confidence            99999999999876677777777775

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=97.98  E-value=4.9e-05  Score=63.66  Aligned_cols=65  Identities=15%  Similarity=0.289  Sum_probs=43.8

Q ss_pred             EEEEEEEec-CCCcEEEEEECCEecCCCCcEEEEEcCC----EEEEEEcccCCCCceeEEEEEEeCCCce
Q psy16863        367 ARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDGN----FYFIDLSSVSLFDSGRWTCLAENAVGRS  431 (1075)
Q Consensus       367 v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~~~~~~~g~----~~~L~I~~v~~~d~G~Y~C~a~n~~g~~  431 (1075)
                      +.|.|.+.+ .|.+.|+|+|+|+++..........++.    ...|.+.....++.+.|+|.|.|.....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~   71 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS   71 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence            689999966 5888999999999986543222222322    2245554444455669999999987553

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=97.96  E-value=7.1e-05  Score=67.37  Aligned_cols=82  Identities=16%  Similarity=0.224  Sum_probs=48.3

Q ss_pred             ceeEEeeCCeEEEEEEecCCC----eeEEEEc-----cCC-CeeEEEeeCCCceecc----CcEEEEe--cCCeEEEEEc
Q psy16863        143 HDIAVKVGTRARLLVEIRSPT----EIKCQFD-----LNN-TIPFSFRAQGDHPIFG----NRFRAIN--RDGRTELNIR  206 (1075)
Q Consensus       143 ~~~~v~~G~~~~l~c~~~~~~----~~~c~~~-----~~~-~~~~~W~~~~~~~~~~----~~~~~~~--~~~~~~L~I~  206 (1075)
                      ..+.+.+|++++|.|......    .+...|.     +.. ...+.+. ++......    +|+.+..  ..+...|+|.
T Consensus         6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~-~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYH-KRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEEC-CCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            466788999999999876432    1223331     111 1112222 12111112    2333221  2345689999


Q ss_pred             eeccCCCeEEEEEEEcCce
Q psy16863        207 RVRRDDGGRYSVTASNESG  225 (1075)
Q Consensus       207 ~~~~~D~G~Y~C~a~n~~g  225 (1075)
                      +++.+|+|.|.|.+.|..+
T Consensus        85 ~v~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          85 QLQPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             eCChhhCEEEEEEEEeCCC
Confidence            9999999999999998654

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.96  E-value=3.4e-05  Score=67.48  Aligned_cols=67  Identities=15%  Similarity=0.241  Sum_probs=51.6

Q ss_pred             eeccCCeEEEEEEEecC--CCcEEEEEECCE--ec------------CCCCcEEEEEcCCEEEEEEcccCCCCceeEEEE
Q psy16863        360 AVKVGTRARLLVEIRSP--TEIKIHWYRNDR--KL------------EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCL  423 (1075)
Q Consensus       360 ~v~~G~~v~l~C~~~g~--p~~~v~W~k~g~--~l------------~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~  423 (1075)
                      .+.+|++++|.|...+.  ....+.|||...  .+            ....++....++....|+|.+++.+|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            57899999999998664  456899998431  11            012466666677778899999999999999999


Q ss_pred             EEe
Q psy16863        424 AEN  426 (1075)
Q Consensus       424 a~n  426 (1075)
                      +.+
T Consensus        82 ~~~   84 (98)
T cd04984          82 VWD   84 (98)
T ss_pred             Ecc
Confidence            865

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=97.96  E-value=5e-05  Score=68.77  Aligned_cols=75  Identities=16%  Similarity=0.252  Sum_probs=50.5

Q ss_pred             cCceeeccCCeEEEEEEEecCC----CcEEEEEECCE------ec---------C-CC----CcEEEEE--cCCEEEEEE
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPT----EIKIHWYRNDR------KL---------E-EN----KIYRTQH--DGNFYFIDL  409 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p----~~~v~W~k~g~------~l---------~-~~----~~~~~~~--~g~~~~L~I  409 (1075)
                      +..+.+.+|++++|.|......    ...+.|++...      .+         . ..    .|+.+..  ..+...|+|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            4566788999999999986532    25799987321      11         0 01    1222221  123467999


Q ss_pred             cccCCCCceeEEEEEEeCCCc
Q psy16863        410 SSVSLFDSGRWTCLAENAVGR  430 (1075)
Q Consensus       410 ~~v~~~d~G~Y~C~a~n~~g~  430 (1075)
                      .+++.+|+|.|.|.+.|....
T Consensus        85 ~~v~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          85 HNLQFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             eeCCcccCEEEEEEEEeCCCC
Confidence            999999999999999987554

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=97.94  E-value=3e-05  Score=67.35  Aligned_cols=78  Identities=19%  Similarity=0.282  Sum_probs=53.3

Q ss_pred             ccCCeEEEEEEEec-CCCcEEEEEECCEecC--C-----------CCcE--EEEEcCCEEEEEEcccCCCCceeEEEEEE
Q psy16863        362 KVGTRARLLVEIRS-PTEIKIHWYRNDRKLE--E-----------NKIY--RTQHDGNFYFIDLSSVSLFDSGRWTCLAE  425 (1075)
Q Consensus       362 ~~G~~v~l~C~~~g-~p~~~v~W~k~g~~l~--~-----------~~~~--~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~  425 (1075)
                      ..|++|+|.|.... .....+.|+|....+.  .           ..++  +...++....|.|.+++.+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            47999999998854 4456999999753221  0           0111  23334445679999999999999999999


Q ss_pred             eCCCce-eeEEEEEe
Q psy16863        426 NAVGRS-HCSCELSV  439 (1075)
Q Consensus       426 n~~g~~-~~s~~l~V  439 (1075)
                      +..|.. ...+.|.|
T Consensus        82 ~~~~~~~~~~f~L~v   96 (97)
T cd05775          82 TKNGVTITKEFTLHI   96 (97)
T ss_pred             cCCCCeEEEEEEEEe
Confidence            887654 33444444

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.94  E-value=4.3e-05  Score=63.78  Aligned_cols=64  Identities=16%  Similarity=0.301  Sum_probs=46.0

Q ss_pred             EEEEEEEec-CCCCeEEEEECCEEeecCCcEEEEEeeCc----EEEEEEccccCCCCeEEEEEEEeCCc
Q psy16863        766 FKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKETLG----VCHLKIHALEVADQAEWKCIATNDFG  829 (1075)
Q Consensus       766 ~~l~C~v~g-~p~p~v~W~k~g~~i~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~~G  829 (1075)
                      +.|.|.+.| +|.+.|+|+|||+.+............++    ...|.|.....+|...|+|.|.|..-
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l   70 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL   70 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence            679999997 68889999999999864332222222222    34677776668889999999998753

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.93  E-value=4.9e-05  Score=65.07  Aligned_cols=74  Identities=15%  Similarity=0.152  Sum_probs=50.4

Q ss_pred             cCceeeccCCeEEEEEEEec-CCCcE--EEEEECCEecCCCCcEEE--EEcCCEEEEEEcccCCCCce-eEEEEEEeCCC
Q psy16863        356 LHDIAVKVGTRARLLVEIRS-PTEIK--IHWYRNDRKLEENKIYRT--QHDGNFYFIDLSSVSLFDSG-RWTCLAENAVG  429 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g-~p~~~--v~W~k~g~~l~~~~~~~~--~~~g~~~~L~I~~v~~~d~G-~Y~C~a~n~~g  429 (1075)
                      +.+..+.+|+.++|.|.+.| .|.+.  |+|||++..+........  .......+|.+. +..+|.| .|+|+|.+..+
T Consensus         8 ~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l~   86 (100)
T cd05755           8 PLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCETELDLR   86 (100)
T ss_pred             cCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEEEeccC
Confidence            34445789999999999966 66665  799999999965321110  112234566665 4556666 99999998765


Q ss_pred             c
Q psy16863        430 R  430 (1075)
Q Consensus       430 ~  430 (1075)
                      .
T Consensus        87 ~   87 (100)
T cd05755          87 P   87 (100)
T ss_pred             c
Confidence            4

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.92  E-value=0.00012  Score=64.48  Aligned_cols=47  Identities=21%  Similarity=0.344  Sum_probs=37.7

Q ss_pred             CcEEEEec---CCeEEEEEceeccCCCeEEEEEEEcCceeEEEEEEEeee
Q psy16863        190 NRFRAINR---DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE  236 (1075)
Q Consensus       190 ~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~  236 (1075)
                      +|..+...   .+...|.|.+++.+|+|.|+|.+.+........+.|.|.
T Consensus        65 gRv~l~~~~~~~g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          65 GRVSVPSHPEDQGDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             CcEEeeccCCcCCceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            35554332   356899999999999999999999988887888888775

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.91  E-value=0.00011  Score=61.55  Aligned_cols=65  Identities=17%  Similarity=0.239  Sum_probs=44.6

Q ss_pred             EEEEEEEec-CCCcEEEEEECCEecCCCCcEEE-EEcCCE----EEEEEcccCCCCceeEEEEEEeCCCce
Q psy16863        367 ARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRT-QHDGNF----YFIDLSSVSLFDSGRWTCLAENAVGRS  431 (1075)
Q Consensus       367 v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~~~~-~~~g~~----~~L~I~~v~~~d~G~Y~C~a~n~~g~~  431 (1075)
                      +.|.|.+.| .|.+.|+|+|||++|........ ..++..    ..|.|.....+|...|+|+|.|.....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~   72 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD   72 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence            689999976 58889999999999876432111 223222    345554545556679999999986543

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=97.91  E-value=5e-05  Score=65.68  Aligned_cols=65  Identities=20%  Similarity=0.209  Sum_probs=47.5

Q ss_pred             CCeEEEEEEEecCCCcEEEEEECCEecCC------------------CCcEEEEEcCCEEEEEEcccCCCCceeEEEEEE
Q psy16863        364 GTRARLLVEIRSPTEIKIHWYRNDRKLEE------------------NKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAE  425 (1075)
Q Consensus       364 G~~v~l~C~~~g~p~~~v~W~k~g~~l~~------------------~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~  425 (1075)
                      |++|+|.|.+...+...|.|+|+......                  ..|+.+..+   ..|.|.+++.+|+|.|+|.+.
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~---~sL~I~~l~~~DsG~Y~c~v~   77 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN---GSLLIQNLTKEDSGTYTLQII   77 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC---ceEEEccCCchhcEEEEEEEE
Confidence            78999999987666779999997633211                  112222222   469999999999999999999


Q ss_pred             eCCCce
Q psy16863        426 NAVGRS  431 (1075)
Q Consensus       426 n~~g~~  431 (1075)
                      ...|..
T Consensus        78 ~~~~~~   83 (92)
T cd05741          78 STNGVT   83 (92)
T ss_pred             cCCCcE
Confidence            876543

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>KOG0613|consensus

Probab=97.88  E-value=9.4e-05  Score=88.79  Aligned_cols=136  Identities=15%  Similarity=0.041  Sum_probs=87.9

Q ss_pred             eccceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCC-ceEEEEEeeeeecCCceEEEEEECCCCce
Q psy16863        556 EVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGL-GGYSIEINYLEAVDDGEWKCVATSSSGVK  634 (1075)
Q Consensus       556 ~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  634 (1075)
                      ....+.+..+..+++.|...+...|..+.||+++.....+........+. ....+.|..+...+.+.|+|.|.|..|..
T Consensus       340 ~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~  419 (1205)
T KOG0613|consen  340 RNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTE  419 (1205)
T ss_pred             ccceeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcc
Confidence            34556677788899999999999887799998877655444322222211 23468889999999999999999999987


Q ss_pred             eeeeEEEEEeCCCCcCCCceeecccee--eecCCeEEEEEEEecCCC--CeEEEEECCEEc
Q psy16863        635 QFSAAYVHVLMPKNYRKPRFVESLKAV--MTDDGLVSFECKVVGFPT--PTLQWFKDNEEL  691 (1075)
Q Consensus       635 ~~~~~~l~v~~p~~~~~p~~~~~~~~~--~~~g~~~~l~C~v~g~p~--p~v~W~k~g~~l  691 (1075)
                      ...........+....++.+.......  +..-..+.+.|.+.+.|.  ..++|++++.+.
T Consensus       420 ~~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~  480 (1205)
T KOG0613|consen  420 QTIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPL  480 (1205)
T ss_pred             cccchhhcccccCCCCCccccccccccccccCCcccccccCCCCccccceeEeeccCCccc
Confidence            654433333333332333332222222  223357889999888774  456677765443

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.88  E-value=4.7e-05  Score=66.63  Aligned_cols=67  Identities=18%  Similarity=0.314  Sum_probs=49.8

Q ss_pred             eeecCCeEEEEEEEecC--CCCeEEEEECCE---E--ee---------cCCcEEEEEeeCcEEEEEEccccCCCCeEEEE
Q psy16863        759 QATVNEEFKFTVQVSIS--PEPKVSWFRDDQ---Q--VV---------ESDNVKILKETLGVCHLKIHALEVADQAEWKC  822 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~--p~p~v~W~k~g~---~--i~---------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C  822 (1075)
                      .+.+|++++|.|.+.+.  ....+.|||...   +  |.         ...++...... +...|+|.+++.+|+|.|.|
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~-~~~~L~I~~~~~~Dsg~Y~C   80 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSG-NTASLTISGAQTEDEADYYC   80 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccC-CEEEEEECCCChhhCEEEEE
Confidence            46789999999999865  556899998431   1  11         12355554433 57789999999999999999


Q ss_pred             EEEe
Q psy16863        823 IATN  826 (1075)
Q Consensus       823 ~A~N  826 (1075)
                      .+.+
T Consensus        81 ~~~~   84 (98)
T cd04984          81 QVWD   84 (98)
T ss_pred             EEcc
Confidence            9875

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=97.87  E-value=9.7e-05  Score=65.14  Aligned_cols=87  Identities=15%  Similarity=0.139  Sum_probs=55.5

Q ss_pred             CCeEEEEEEecCCC-------eeEEEEccC------CCeeEEEeeCCCce---eccCcEEEEec---CCeEEEEEceecc
Q psy16863        150 GTRARLLVEIRSPT-------EIKCQFDLN------NTIPFSFRAQGDHP---IFGNRFRAINR---DGRTELNIRRVRR  210 (1075)
Q Consensus       150 G~~~~l~c~~~~~~-------~~~c~~~~~------~~~~~~W~~~~~~~---~~~~~~~~~~~---~~~~~L~I~~~~~  210 (1075)
                      |++++|.|....++       .+...|..-      ....+.|+.++...   ...+|..+...   .+...|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            67889999855321       234444311      12233444444321   23456655432   3578999999999


Q ss_pred             CCCeEEEEEEEcCceeEEEEEEEeee
Q psy16863        211 DDGGRYSVTASNESGYSTAKFELSVE  236 (1075)
Q Consensus       211 ~D~G~Y~C~a~n~~g~~~~~~~l~V~  236 (1075)
                      +|+|.|.|.+.......+..+.|.|.
T Consensus        82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          82 SDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             HHCEEEEEEEEECCcccEEEEEEEEE
Confidence            99999999999877667777777775

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.85  E-value=0.00016  Score=65.56  Aligned_cols=73  Identities=16%  Similarity=0.297  Sum_probs=53.2

Q ss_pred             cceeeeecCCeEEEEEEEe-cCCCCeEEEEECCE-----Eee--------------cCCcEEEEEe-eCcEEEEEEcccc
Q psy16863        755 LKSCQATVNEEFKFTVQVS-ISPEPKVSWFRDDQ-----QVV--------------ESDNVKILKE-TLGVCHLKIHALE  813 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~-g~p~p~v~W~k~g~-----~i~--------------~~~~~~~~~~-~~~~~~L~I~~~~  813 (1075)
                      +..+.+.+|+++.|.|... ......+.|++...     .+.              ...++.+... ..+.+.|.|.+++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~   87 (114)
T PF07686_consen    8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ   87 (114)
T ss_dssp             ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred             CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence            3456788999999999999 45667999998322     111              0123333322 2347889999999


Q ss_pred             CCCCeEEEEEEEeC
Q psy16863        814 VADQAEWKCIATND  827 (1075)
Q Consensus       814 ~~D~G~Y~C~A~N~  827 (1075)
                      .+|+|.|.|.+...
T Consensus        88 ~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   88 PSDSGTYFCQVSTS  101 (114)
T ss_dssp             GGGEEEEEEEEEES
T ss_pred             cCcCEEEEEEEEEC
Confidence            99999999999987

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.84  E-value=0.00014  Score=66.01  Aligned_cols=73  Identities=16%  Similarity=0.320  Sum_probs=54.0

Q ss_pred             ecCceeeccCCeEEEEEEEe-cCCCcEEEEEECCE-----ecC--------------CCCcEEEEEc--CCEEEEEEccc
Q psy16863        355 RLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDR-----KLE--------------ENKIYRTQHD--GNFYFIDLSSV  412 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~~-g~p~~~v~W~k~g~-----~l~--------------~~~~~~~~~~--g~~~~L~I~~v  412 (1075)
                      .+..+.+.+|+++.|.|... ......+.|++...     .+.              -..++.+..+  .....|.|.++
T Consensus         7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l   86 (114)
T PF07686_consen    7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL   86 (114)
T ss_dssp             EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred             eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence            35677899999999999998 45567999999332     111              0123333333  34678999999


Q ss_pred             CCCCceeEEEEEEeC
Q psy16863        413 SLFDSGRWTCLAENA  427 (1075)
Q Consensus       413 ~~~d~G~Y~C~a~n~  427 (1075)
                      +.+|+|.|.|.+...
T Consensus        87 ~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   87 QPSDSGTYFCQVSTS  101 (114)
T ss_dssp             SGGGEEEEEEEEEES
T ss_pred             CcCcCEEEEEEEEEC
Confidence            999999999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=97.84  E-value=9.2e-05  Score=65.88  Aligned_cols=74  Identities=16%  Similarity=0.166  Sum_probs=49.1

Q ss_pred             ecceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCC--------------CceeccCcEEEEecCCeEEEEEc
Q psy16863        141 RLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG--------------DHPIFGNRFRAINRDGRTELNIR  206 (1075)
Q Consensus       141 ~~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~--------------~~~~~~~~~~~~~~~~~~~L~I~  206 (1075)
                      .+..+.+.+|++++|.|.+....         ....+.|++..              .......|+.....+....|+|.
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~---------~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~   76 (106)
T cd04980           6 SPATLSVSPGESATISCKASQSV---------SSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTIS   76 (106)
T ss_pred             CCCcEEECCCCCEEEEEEECCCC---------CCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEEC
Confidence            34566788999999999886432         01234444321              01111246665555566789999


Q ss_pred             eeccCCCeEEEEEEEcC
Q psy16863        207 RVRRDDGGRYSVTASNE  223 (1075)
Q Consensus       207 ~~~~~D~G~Y~C~a~n~  223 (1075)
                      +++.+|+|.|.|.+.+.
T Consensus        77 ~~~~~Dsg~Y~Ca~~~~   93 (106)
T cd04980          77 RVEPEDAAVYYCQQYGT   93 (106)
T ss_pred             CCChHHCEEEEEEEeCC
Confidence            99999999999998653

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd00098 IgC Immunoglobulin Constant domain

Probab=97.83  E-value=5.8e-05  Score=65.74  Aligned_cols=69  Identities=16%  Similarity=0.308  Sum_probs=50.9

Q ss_pred             ccCCeEEEEEEEecC-C-CcEEEEEECCEecCCCCc---EEEEEcCCEE---EEEEcccCCCCceeEEEEEEeCCCc
Q psy16863        362 KVGTRARLLVEIRSP-T-EIKIHWYRNDRKLEENKI---YRTQHDGNFY---FIDLSSVSLFDSGRWTCLAENAVGR  430 (1075)
Q Consensus       362 ~~G~~v~l~C~~~g~-p-~~~v~W~k~g~~l~~~~~---~~~~~~g~~~---~L~I~~v~~~d~G~Y~C~a~n~~g~  430 (1075)
                      ..|+.++|.|.+.|. | .+.|+|++||..+.....   .....+|...   .|.|......|.|.|+|+|.|....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            478999999999886 5 579999999999876543   2223344433   4666665566999999999998654

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.82  E-value=0.00027  Score=62.39  Aligned_cols=78  Identities=15%  Similarity=0.313  Sum_probs=54.7

Q ss_pred             CCeEEEEEEEecCC-----------CCeEEEEEC-----CE-----Ee--ecC----------CcEEEEEe--eCcEEEE
Q psy16863        763 NEEFKFTVQVSISP-----------EPKVSWFRD-----DQ-----QV--VES----------DNVKILKE--TLGVCHL  807 (1075)
Q Consensus       763 g~~~~l~C~v~g~p-----------~p~v~W~k~-----g~-----~i--~~~----------~~~~~~~~--~~~~~~L  807 (1075)
                      |.+++|.|.+.-.|           .+.|.|+|-     |+     .+  ..+          +|..+...  ..+...|
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL   81 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL   81 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence            67899999988544           238999873     11     11  111          23333322  2356789


Q ss_pred             EEccccCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy16863        808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLN  840 (1075)
Q Consensus       808 ~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~  840 (1075)
                      .|.+++.+|+|.|+|.+.+.....+....|.|.
T Consensus        82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             EEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            999999999999999999988877777777775

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=97.81  E-value=0.00015  Score=68.10  Aligned_cols=87  Identities=9%  Similarity=0.237  Sum_probs=61.8

Q ss_pred             ceeeeecCCeEEEEEEEe-cCCCCeEEEEECCEEee----------c--CCcEEEEEeeCcEEEEEEccccCCCCeEEEE
Q psy16863        756 KSCQATVNEEFKFTVQVS-ISPEPKVSWFRDDQQVV----------E--SDNVKILKETLGVCHLKIHALEVADQAEWKC  822 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~-g~p~p~v~W~k~g~~i~----------~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C  822 (1075)
                      ..++|.+|+++.|.|... +...+.++|+|..+.+.          +  .+|+.+.........|+|.+++.+|+|.|+|
T Consensus        23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C  102 (189)
T PHA02987         23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC  102 (189)
T ss_pred             EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence            346688999999999985 55678999999743321          1  1245544444456789999999999999999


Q ss_pred             EEEe-CCc-eEEEEEEEEEEec
Q psy16863        823 IATN-DFG-QSITSCFLKLNVP  842 (1075)
Q Consensus       823 ~A~N-~~G-~~~~s~~l~V~~~  842 (1075)
                      ...- +.| ..+....|.|..+
T Consensus       103 ~F~tfp~G~~~~gt~CLtVt~~  124 (189)
T PHA02987        103 IFNTLLSKNNEKGVVCLNVTTD  124 (189)
T ss_pred             EEEecCCCCCceeEEEEEEEch
Confidence            8752 235 5556677777653

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=97.80  E-value=0.0001  Score=64.17  Aligned_cols=77  Identities=17%  Similarity=0.302  Sum_probs=51.3

Q ss_pred             CCeEEEEEEEecCCCC-eEEEEECCE----Eee---c----------CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEE
Q psy16863        763 NEEFKFTVQVSISPEP-KVSWFRDDQ----QVV---E----------SDNVKILKETLGVCHLKIHALEVADQAEWKCIA  824 (1075)
Q Consensus       763 g~~~~l~C~v~g~p~p-~v~W~k~g~----~i~---~----------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A  824 (1075)
                      |++++|.|........ .|.|+|...    .+.   .          .+++.+.....+.+.|.|.+++.+|+|.|.|..
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            7889999997754332 699998532    111   0          112233223335678999999999999999997


Q ss_pred             E-eCCceEEEEEEEEE
Q psy16863        825 T-NDFGQSITSCFLKL  839 (1075)
Q Consensus       825 ~-N~~G~~~~s~~l~V  839 (1075)
                      . ...|.......|+|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            6 45566655666665

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=97.78  E-value=0.00022  Score=62.90  Aligned_cols=78  Identities=13%  Similarity=0.285  Sum_probs=53.5

Q ss_pred             CCeEEEEEEEecCC-------CCeEEEEEC-----CEEe--e--c----------CCcEEEEEee--CcEEEEEEccccC
Q psy16863        763 NEEFKFTVQVSISP-------EPKVSWFRD-----DQQV--V--E----------SDNVKILKET--LGVCHLKIHALEV  814 (1075)
Q Consensus       763 g~~~~l~C~v~g~p-------~p~v~W~k~-----g~~i--~--~----------~~~~~~~~~~--~~~~~L~I~~~~~  814 (1075)
                      |+++.|.|...-.|       .+.|.|+|-     .+.+  .  .          ..|..+....  .+...|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            78899999976433       368999874     1111  0  1          1233333211  3567999999999


Q ss_pred             CCCeEEEEEEEeCCceEEEEEEEEEE
Q psy16863        815 ADQAEWKCIATNDFGQSITSCFLKLN  840 (1075)
Q Consensus       815 ~D~G~Y~C~A~N~~G~~~~s~~l~V~  840 (1075)
                      +|+|.|.|.........+..+.|+|.
T Consensus        82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          82 SDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             HHCEEEEEEEEECCcccEEEEEEEEE
Confidence            99999999999866566666777665

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.76  E-value=0.00019  Score=61.34  Aligned_cols=75  Identities=13%  Similarity=0.238  Sum_probs=52.2

Q ss_pred             eEEEEEEEecCC-CCeEEEEECC----EEeec-------------CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEE-E
Q psy16863        765 EFKFTVQVSISP-EPKVSWFRDD----QQVVE-------------SDNVKILKETLGVCHLKIHALEVADQAEWKCIA-T  825 (1075)
Q Consensus       765 ~~~l~C~v~g~p-~p~v~W~k~g----~~i~~-------------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A-~  825 (1075)
                      +++|.|.....+ ...|+|.|-.    ..+..             .+|..+.....+..+|.|.+++.+|+|.|+|.+ .
T Consensus         2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~t   81 (96)
T cd05887           2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAVT   81 (96)
T ss_pred             CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEEe
Confidence            688999987433 3489998842    12210             123444323334568999999999999999996 5


Q ss_pred             eCCceEEEEEEEEE
Q psy16863        826 NDFGQSITSCFLKL  839 (1075)
Q Consensus       826 N~~G~~~~s~~l~V  839 (1075)
                      .+.|+.+++..|+|
T Consensus        82 fP~G~~~~~~~l~~   95 (96)
T cd05887          82 FPLGNTQSSTTVTV   95 (96)
T ss_pred             CCCCCeeEEEEEEE
Confidence            67788888888876

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.74  E-value=0.00014  Score=65.91  Aligned_cols=72  Identities=17%  Similarity=0.320  Sum_probs=52.8

Q ss_pred             cceeeeecCCeEEEEEEEecC-CCCeEEEEEC--CEE---e---------ecCCcEEEEEe-eCcEEEEEEccccCCCCe
Q psy16863        755 LKSCQATVNEEFKFTVQVSIS-PEPKVSWFRD--DQQ---V---------VESDNVKILKE-TLGVCHLKIHALEVADQA  818 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~-p~p~v~W~k~--g~~---i---------~~~~~~~~~~~-~~~~~~L~I~~~~~~D~G  818 (1075)
                      ++.+.+..|++++|.|..... ....+.|||.  +..   |         ...+|+.+..+ ..+...|+|.+++.+|+|
T Consensus         6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg   85 (116)
T cd07706           6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSA   85 (116)
T ss_pred             CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCE
Confidence            345668899999999998854 4568999983  211   1         01245665432 345789999999999999


Q ss_pred             EEEEEEEe
Q psy16863        819 EWKCIATN  826 (1075)
Q Consensus       819 ~Y~C~A~N  826 (1075)
                      .|.|.+.+
T Consensus        86 ~Y~C~~~~   93 (116)
T cd07706          86 KYFCALST   93 (116)
T ss_pred             EEEEEEEC
Confidence            99999985

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.73  E-value=0.00017  Score=65.39  Aligned_cols=74  Identities=22%  Similarity=0.386  Sum_probs=54.4

Q ss_pred             eecCceeeccCCeEEEEEEEecC-CCcEEEEEECC--Ee---c---------CCCCcEEEEE--cCCEEEEEEcccCCCC
Q psy16863        354 RRLHDIAVKVGTRARLLVEIRSP-TEIKIHWYRND--RK---L---------EENKIYRTQH--DGNFYFIDLSSVSLFD  416 (1075)
Q Consensus       354 ~~~~~~~v~~G~~v~l~C~~~g~-p~~~v~W~k~g--~~---l---------~~~~~~~~~~--~g~~~~L~I~~v~~~d  416 (1075)
                      ..+..+.+.+|++++|.|..... ....+.|||..  ..   +         ....|+.+..  .+....|+|.++..+|
T Consensus         4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D   83 (116)
T cd07706           4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED   83 (116)
T ss_pred             EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence            34567789999999999998653 45789999832  11   1         1124565543  3456789999999999


Q ss_pred             ceeEEEEEEeC
Q psy16863        417 SGRWTCLAENA  427 (1075)
Q Consensus       417 ~G~Y~C~a~n~  427 (1075)
                      +|.|.|.+...
T Consensus        84 sg~Y~C~~~~~   94 (116)
T cd07706          84 SAKYFCALSTL   94 (116)
T ss_pred             CEEEEEEEECC
Confidence            99999999853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PHA03270 envelope glycoprotein C; Provisional

Probab=97.71  E-value=0.026  Score=59.99  Aligned_cols=177  Identities=12%  Similarity=0.112  Sum_probs=99.2

Q ss_pred             eEEEeeCCeEEEEEcccCCCCCEEEEEEEEeCCee--EEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEec-
Q psy16863        299 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGY--STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS-  375 (1075)
Q Consensus       299 ~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g-  375 (1075)
                      |.+........|.|..++...+|.|+=...+..+.  ....+.|..+    .+|.+..  ..-.+.+|++..-.|.+.. 
T Consensus       173 y~~~g~~p~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~y----r~Psvsv--~~~PvL~Ge~Y~AtC~va~Y  246 (466)
T PHA03270        173 YSVEGTFPTQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMF----RRPSLSI--RPHAVLEGEPFGATCVAANY  246 (466)
T ss_pred             ccccCCCCcceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEe----cCCcccc--cCCccccCCCceEEEEeeee
Confidence            33333334457999999999999999887765553  3344444444    3555433  3345789999999999965 


Q ss_pred             CC--CcEEEEEECCEecCCCCc----EEEEEcCCE--EEEEEcccCCCCc-eeEEEEEEeCCCce-eeEEEEEeecCCCC
Q psy16863        376 PT--EIKIHWYRNDRKLEENKI----YRTQHDGNF--YFIDLSSVSLFDS-GRWTCLAENAVGRS-HCSCELSVLVPKAY  445 (1075)
Q Consensus       376 ~p--~~~v~W~k~g~~l~~~~~----~~~~~~g~~--~~L~I~~v~~~d~-G~Y~C~a~n~~g~~-~~s~~l~V~~~~~~  445 (1075)
                      .|  ...++||+||.++.....    .....+|-.  ++|++........ =..+|.+.=..+.. .....-. -.+..+
T Consensus       247 YPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa-~~P~VY  325 (466)
T PHA03270        247 YPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNAT-GAPTVL  325 (466)
T ss_pred             cCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeeccc-ccCccc
Confidence            33  458999999998854222    222234422  2333322211111 27799986332222 2122111 122233


Q ss_pred             CCCeeeeecceEEecCCeEEEEEEEECCCCC-eEEEEeCCEeccC
Q psy16863        446 KAPFFTKELEAILTEQGTVSLECKVMGIPTP-QLIWYKDNKKIKA  489 (1075)
Q Consensus       446 ~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~v~W~~~g~~l~~  489 (1075)
                      .+|.+...    +..|.   ..|.+...|.. .+.|+.++.....
T Consensus       326 ~~P~Isv~----F~dG~---AVCtA~CVPegV~l~W~V~D~~~pa  363 (466)
T PHA03270        326 PRPTIEME----FGGDE---AVCTAACVPEGVTLAWLLGADPAPA  363 (466)
T ss_pred             cCCeEEEE----EeCCE---EEEeccccCCCCEEEEEecCCCCCC
Confidence            44444432    33332   24666655543 8999988766543

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=97.71  E-value=0.00021  Score=67.19  Aligned_cols=86  Identities=21%  Similarity=0.256  Sum_probs=60.6

Q ss_pred             CceeeccCCeEEEEEEEe-cCCCcEEEEEECCEec----------CC--CCcEE-EEEcCCEEEEEEcccCCCCceeEEE
Q psy16863        357 HDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKL----------EE--NKIYR-TQHDGNFYFIDLSSVSLFDSGRWTC  422 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~-g~p~~~v~W~k~g~~l----------~~--~~~~~-~~~~g~~~~L~I~~v~~~d~G~Y~C  422 (1075)
                      ..+.|.+|++++|.|... +...+.+.|+|....+          .+  .+|+. +...-....|+|.+++.+|+|.|+|
T Consensus        23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C  102 (189)
T PHA02987         23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC  102 (189)
T ss_pred             EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence            456789999999999984 5567899999974322          11  12444 2333344679999999999999999


Q ss_pred             EEEe-CCC-ceeeEEEEEeecC
Q psy16863        423 LAEN-AVG-RSHCSCELSVLVP  442 (1075)
Q Consensus       423 ~a~n-~~g-~~~~s~~l~V~~~  442 (1075)
                      ...- +.| ..+...-|+|..+
T Consensus       103 ~F~tfp~G~~~~gt~CLtVt~~  124 (189)
T PHA02987        103 IFNTLLSKNNEKGVVCLNVTTD  124 (189)
T ss_pred             EEEecCCCCCceeEEEEEEEch
Confidence            9753 345 5566666777654

>PRK14081 triple tyrosine motif-containing protein; Provisional

Probab=97.70  E-value=0.19  Score=58.29  Aligned_cols=457  Identities=13%  Similarity=0.130  Sum_probs=226.6

Q ss_pred             ceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCccccCCCeEEEee-CCeEEEEEcccCCCCCEEE--EEEEE
Q psy16863        252 IAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINR-DGRTELNIRRVRRDDGGRY--SVTAS  328 (1075)
Q Consensus       252 ~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~d~G~Y--~C~a~  328 (1075)
                      ..+..|+.+.|.+....           .++.+.+|..+.     ..+....+ +....|...   +...|.|  .|.+.
T Consensus       107 ~~l~vGe~l~~~V~~~~-----------e~~LYKF~I~~~-----~~w~~iqDYst~n~lsyt---~~~~G~Y~ll~~~K  167 (667)
T PRK14081        107 DTLNVGEKIEIKVDSNK-----------EPLMYRYWIKED-----NNWKLIKDYSTENSLSYT---ANKPGKYELLVECK  167 (667)
T ss_pred             ccccCCCEEEEEEEecc-----------CcEEEEEEEcCC-----CcEEEEEecCCcceEEEE---ecCCCcEEEEEEEe
Confidence            34668988888776543           235666665441     22233322 122244442   3466666  67776


Q ss_pred             eCCee----EEEEEEEEEecCCCCCCeeee--ecCceeeccCCeEEEEEEEec--CCCcEEEEEECCEecCCCCcEEEEE
Q psy16863        329 NESGY----STAKFELSVESQVPDAPAFIR--RLHDIAVKVGTRARLLVEIRS--PTEIKIHWYRNDRKLEENKIYRTQH  400 (1075)
Q Consensus       329 n~~g~----~~~~~~l~V~~~~~~~p~~~~--~~~~~~v~~G~~v~l~C~~~g--~p~~~v~W~k~g~~l~~~~~~~~~~  400 (1075)
                      +....    ..+.+.+.|..  ...+.+..  .+ +..+..|+.+.|...+..  .-..-++..+.+   ..+.....+.
T Consensus       168 d~~S~~~fDD~~~v~y~Vk~--~~~v~I~~F~~l-ns~~i~~~eI~f~~~a~~~~g~~~LYKF~~i~---~~G~~~~~qd  241 (667)
T PRK14081        168 RIDSTKDFDDFKKVKFKVKE--IDKVEITDFKCL-NKELICDEELVFEVESVYEEDRTILYKFVKID---SDGKQTCIQD  241 (667)
T ss_pred             cCCCccccCcceEEEEEccc--CcceEEEecccc-CcceecCcEEEEEEEEEeCCCceEEEEEEEEC---CCCCEEEecC
Confidence            64443    34445555542  12222221  12 234556999999966543  333445554411   1111111111


Q ss_pred             cCCEEEEEEcccCCCCceeEE--EEEEeCCCc----eeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCC
Q psy16863        401 DGNFYFIDLSSVSLFDSGRWT--CLAENAVGR----SHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIP  474 (1075)
Q Consensus       401 ~g~~~~L~I~~v~~~d~G~Y~--C~a~n~~g~----~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p  474 (1075)
                      -+....+   .-.+..+|.|+  |.+......    +.+....+|...+...--.+..........|+.+.|.+.+.|.-
T Consensus       242 Yst~n~~---~y~~~~~G~Y~i~~~VKD~~S~~eyDD~~~l~y~Vk~~~~vkI~~~~~d~~s~ql~g~~I~ika~a~GG~  318 (667)
T PRK14081        242 YSTKNIV---SYKEKKSGDYKLLCLVKDMYSNNEFDDRAVLVYTVKPYKDIKIRNFTTDLSSPQLTDTDIELKAVAEGGK  318 (667)
T ss_pred             ccccceE---EEEeCCCccEEEEEEEeccCcccccccceEEEEEEecCCCcEEEEEEEcCCCCeecCceEEEEEEecCCC
Confidence            1222222   23467899886  556554332    23334444432111111123333333356788999999999866


Q ss_pred             CCeEEEEeCCEeccCCC---EEEEEeCCCCCCCcEEEEEEEE--eccee----eEEEEEEEEeccccccCCCCCCcCCCC
Q psy16863        475 TPQLIWYKDNKKIKAGD---IFALTANPKDPSSLGTYTCEAV--NCMGA----AFSTSRVIARGQQSFLDNDDVPFNSLM  545 (1075)
Q Consensus       475 ~~~v~W~~~g~~l~~~~---~~~l~i~~~~~~d~G~Y~C~a~--n~~g~----~~~~~~v~v~~~~~~~~~~~~~~~~~~  545 (1075)
                      ...++..-.|..+...+   ...+..   .++.+|.|...+.  +....    +.....+.+...               
T Consensus       319 ~llYrf~I~G~~~e~~~Y~~~n~~~w---~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~---------------  380 (667)
T PRK14081        319 ELLYRFIIKGKESEDSGYIRNNIYTW---KPKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEEK---------------  380 (667)
T ss_pred             ceEEEEEECCcEEeeccccccceEEE---eeCCCceEEEEEEEEcCcCcccccceEEEEEEEccc---------------
Confidence            66776555566554322   112332   2345799976654  22221    122223333311               


Q ss_pred             CCCCCCeee--eeccceEeecCCeEEEEEEEecCCCCceEE-EEe-CCeEEecCCcEEEEEcCCceEEEEEeeeeecCCc
Q psy16863        546 PPGPAPIFI--KEVENVKAKIGTSAILECQVLVPPWPRSIY-WYN-KEGVVEASDKYHIMADGLGGYSIEINYLEAVDDG  621 (1075)
Q Consensus       546 ~~~~~~~~~--~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~-W~~-~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  621 (1075)
                       ...|..+.  ..+.......|+++.+.|.+.+... ..+. |.+ +|..+... .+.  .    ...+.   ..+.-+|
T Consensus       381 -~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~-~lY~f~ik~ng~~ve~~-~Y~--~----~~~~~---f~P~~~G  448 (667)
T PRK14081        381 -SKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTN-LRYSFIIKKDGKEEEKI-DYG--K----NNWVN---FIPEEKG  448 (667)
T ss_pred             -CCCCeEEEEEEECCCCceEeCCeEEEEEEecCCCe-EEEEEEEEECCEEEEEe-ecc--c----ccEEE---EEECCCe
Confidence             01122111  1223345677999999999987753 2343 333 44444321 110  0    01222   2345677


Q ss_pred             eEEEE--EECCCCceee---eeEEEEEeCCCCcCCCceeeccceeeecCCeEEEEEEEecCCCCeEEEE--ECCEEcC--
Q psy16863        622 EWKCV--ATSSSGVKQF---SAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWF--KDNEELK--  692 (1075)
Q Consensus       622 ~Y~C~--a~n~~g~~~~---~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~--k~g~~l~--  692 (1075)
                      .|+..  |.|.......   ....+.|....+..--.++.+.......|+.++|+|.+.|.-...+..+  .+|..+.  
T Consensus       449 ~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~v~~t  528 (667)
T PRK14081        449 NYELEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGHKVEET  528 (667)
T ss_pred             eEEEEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEEEEEe
Confidence            77654  4555443321   2233444321111111122233345667999999999998655544433  3555442  


Q ss_pred             ---CCCeEEEeecCCCceEEEEE--EecCce----EEEEEEEEEEeccccCchhhhhhhccCCCCCeEEe-ccceeeeec
Q psy16863        693 ---PGDVYQLTGTSSLGSYCCVA--KNVMGK----AESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIE-GLKSCQATV  762 (1075)
Q Consensus       693 ---~~~~~~~~~~~d~G~Y~C~a--~N~~g~----~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~  762 (1075)
                         .+..|.+. ...+|.|+..+  .|....    ....+.+.|.+.                .|+.-+. ......+..
T Consensus       529 ~Ys~~~~ysf~-P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~----------------~pi~nt~~~~~~~~~~~  591 (667)
T PRK14081        529 DYIKNKKYKFI-PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREA----------------LPITNTKIKTSKKKFKC  591 (667)
T ss_pred             eccccceEEEe-ecCCceEEEEEEEcccccccccccceEEEEEEcCC----------------CCceeeEEEeecceEEc
Confidence               23445554 34789997655  554433    234566777642                1222221 233456888


Q ss_pred             CCeEEEEEEEecCCCCeEEEE
Q psy16863        763 NEEFKFTVQVSISPEPKVSWF  783 (1075)
Q Consensus       763 g~~~~l~C~v~g~p~p~v~W~  783 (1075)
                      |+.++|+....|.-..-+..+
T Consensus       592 n~~~t~~~~~~gg~~v~Yef~  612 (667)
T PRK14081        592 NEEVTFSVKSEGGKDVCYEFY  612 (667)
T ss_pred             CCeEEEEEEccCCCcEEEEEE
Confidence            999999999888766655543

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.69  E-value=0.00015  Score=63.39  Aligned_cols=69  Identities=12%  Similarity=0.195  Sum_probs=51.2

Q ss_pred             eeecCCeEEEEEEEec-CCCCeEEEEECCE-----Ee--------ecCCcEEEEEe-eCcEEEEEEccccCCCCeEEEEE
Q psy16863        759 QATVNEEFKFTVQVSI-SPEPKVSWFRDDQ-----QV--------VESDNVKILKE-TLGVCHLKIHALEVADQAEWKCI  823 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g-~p~p~v~W~k~g~-----~i--------~~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~  823 (1075)
                      .+.+|++++|.|.... .+...+.|+|...     .|        ....++.+... ..+.+.|+|.+++.+|+|.|.|.
T Consensus         3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   82 (98)
T cd05716           3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG   82 (98)
T ss_pred             EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence            4789999999999875 3566899998642     11        11245555422 24678999999999999999999


Q ss_pred             EEeC
Q psy16863        824 ATND  827 (1075)
Q Consensus       824 A~N~  827 (1075)
                      +.+.
T Consensus        83 ~~~~   86 (98)
T cd05716          83 VGDD   86 (98)
T ss_pred             cccC
Confidence            9875

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=97.67  E-value=0.0002  Score=61.71  Aligned_cols=65  Identities=23%  Similarity=0.463  Sum_probs=51.1

Q ss_pred             CeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccC---------CCEEEEEeCCCCCCCcEEEEEEEE
Q psy16863        448 PFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA---------GDIFALTANPKDPSSLGTYTCEAV  513 (1075)
Q Consensus       448 p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~---------~~~~~l~i~~~~~~d~G~Y~C~a~  513 (1075)
                      |.+...+..++.+|++|+|.|.... +...+.|+|+|.....         .....+.|..++.+|+|.|+|...
T Consensus         2 P~l~a~p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711           2 PFLSAHPSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             CEEEecCCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            4666667777899999999998765 5568999999865321         124467899999999999999975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=97.66  E-value=0.00051  Score=60.07  Aligned_cols=46  Identities=24%  Similarity=0.315  Sum_probs=34.6

Q ss_pred             CcEEEEe--cCCeEEEEEceeccCCCeEEEEEEEc-CceeEEEEEEEee
Q psy16863        190 NRFRAIN--RDGRTELNIRRVRRDDGGRYSVTASN-ESGYSTAKFELSV  235 (1075)
Q Consensus       190 ~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~n-~~g~~~~~~~l~V  235 (1075)
                      +|.++..  ..+...|+|.+++.+|+|.|.|.+.+ ..|..+..+.|.|
T Consensus        51 ~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          51 GRVRFETPNPIADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             CcEEEeCCCCCCceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence            4555542  23456899999999999999999998 6676666666665

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>PHA03270 envelope glycoprotein C; Provisional

Probab=97.65  E-value=0.012  Score=62.41  Aligned_cols=122  Identities=11%  Similarity=0.189  Sum_probs=72.2

Q ss_pred             eeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCC--EEEEEEcccCCCCceeEEEEEEeCCCceeeEEEE
Q psy16863        360 AVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGN--FYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCEL  437 (1075)
Q Consensus       360 ~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~--~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l  437 (1075)
                      ....|+.+.+.-.... ....+.|--.-.+=..-..|.+  .|.  ...|.|..++...+|.|+-..-+..+.......+
T Consensus       138 ~a~~~g~l~y~sa~~~-~~~~~~~a~ga~Pg~~P~~y~~--~g~~p~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~V  214 (466)
T PHA03270        138 TAPPGGELVYDSAPNR-TDPRVRWAEGAGPGARPRLYSV--EGTFPTQRLVIQELTLATQGMYYWARGPADRPHRYGTWT  214 (466)
T ss_pred             ccCCCceEEeccCccc-cCcccccccCCCCCCCCccccc--cCCCCcceEEEEEcccccceEEEEEEecCCCceeeeeEE
Confidence            3445666655422211 2446777632211000112333  232  2369999999999999999987766644433334


Q ss_pred             EeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCC---eEEEEeCCEecc
Q psy16863        438 SVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTP---QLIWYKDNKKIK  488 (1075)
Q Consensus       438 ~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~---~v~W~~~g~~l~  488 (1075)
                      +|..   +.+|.+..... .+.+|+...-.|.+..+-++   .++||+||.++.
T Consensus       215 tV~~---yr~Psvsv~~~-PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~  264 (466)
T PHA03270        215 RVRM---FRRPSLSIRPH-AVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVF  264 (466)
T ss_pred             EEEE---ecCCcccccCC-ccccCCCceEEEEeeeecCCCceEEEEEeCCcccc
Confidence            4432   22334333322 25689999999999875444   889999999885

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=97.63  E-value=0.00023  Score=61.96  Aligned_cols=69  Identities=25%  Similarity=0.453  Sum_probs=45.7

Q ss_pred             CCeEEEEEEEecCCCCceEEEEeCCeE----Ee---c----------CCcEEEEEcCCceEEEEEeeeeecCCceEEEEE
Q psy16863        565 GTSAILECQVLVPPWPRSIYWYNKEGV----VE---A----------SDKYHIMADGLGGYSIEINYLEAVDDGEWKCVA  627 (1075)
Q Consensus       565 G~~~~L~C~~~~~p~p~~v~W~~~~~~----i~---~----------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  627 (1075)
                      |++++|.|..........+.|++....    +.   .          ..+..+...+.+..+|+|.+++.+|+|.|+|..
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            789999999765543347999985421    10   0          112222223334578999999999999999997


Q ss_pred             ECC-CCc
Q psy16863        628 TSS-SGV  633 (1075)
Q Consensus       628 ~n~-~g~  633 (1075)
                      ... .|.
T Consensus        81 ~~~p~g~   87 (97)
T cd05846          81 NTFPDGS   87 (97)
T ss_pred             EeCCCCC
Confidence            643 344

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.62  E-value=0.0068  Score=64.99  Aligned_cols=168  Identities=15%  Similarity=0.245  Sum_probs=96.2

Q ss_pred             EEEEEcccCCCCCEEEEEEEEeCC-e--eEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEec-CC--CcEE
Q psy16863        308 TELNIRRVRRDDGGRYSVTASNES-G--YSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS-PT--EIKI  381 (1075)
Q Consensus       308 ~~L~I~~~~~~d~G~Y~C~a~n~~-g--~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g-~p--~~~v  381 (1075)
                      ..|+|.+++..++|.|.=+..+.. +  ..+..+.|.++    .+|.+..  ..-.+.+|++..-.|.+.. .|  ...+
T Consensus       289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~y----r~PsVsV--~p~PVL~Ge~YkAtC~vA~YYPp~Svrl  362 (566)
T PHA03269        289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSY----KRPNITV--IGDPVLLGNPYAAYCKVNKYYPPHSVIV  362 (566)
T ss_pred             cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEe----cCCCccc--cCCccccCCCceEEEEeeeecCCCceEE
Confidence            469999999999999987665322 2  23445555555    3554432  3346789999999999965 33  4589


Q ss_pred             EEEECCEecCCCC---cEEEEEcCCEE---EEEEcccCCCC--ceeEEEEEEeCCC-ceeeEEEEEeecCCCCCCCeeee
Q psy16863        382 HWYRNDRKLEENK---IYRTQHDGNFY---FIDLSSVSLFD--SGRWTCLAENAVG-RSHCSCELSVLVPKAYKAPFFTK  452 (1075)
Q Consensus       382 ~W~k~g~~l~~~~---~~~~~~~g~~~---~L~I~~v~~~d--~G~Y~C~a~n~~g-~~~~s~~l~V~~~~~~~~p~~~~  452 (1075)
                      +||+||.++....   .+....+|.+.   +|++......|  -=..+|.+.=..+ .......-.+ .+..+.+|.+..
T Consensus       363 rWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaa-tP~VY~~PtISm  441 (566)
T PHA03269        363 KWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAV-TPDVYPFPNVSI  441 (566)
T ss_pred             EEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheeccccc-CCccccCCeEEE
Confidence            9999999887532   22334556443   33332211112  2246999863322 2222111111 122233444433


Q ss_pred             ecceEEecCCeEEEEEEEECCCCC--eEEEEeCCEeccC
Q psy16863        453 ELEAILTEQGTVSLECKVMGIPTP--QLIWYKDNKKIKA  489 (1075)
Q Consensus       453 ~~~~~~~~g~~v~l~C~~~g~p~~--~v~W~~~g~~l~~  489 (1075)
                      .    +..|.   ..|.+...|..  .+.|+.++.....
T Consensus       442 ~----FedG~---AVCtA~CVP~~~V~l~WlVgD~p~~~  473 (566)
T PHA03269        442 E----IIDGH---IVCLAKCVPRGVVHFNWWINDIPIEH  473 (566)
T ss_pred             E----EeCCE---EEEecccccCCCceEEEEecCCCCCC
Confidence            2    33332   24777766653  8999988877543

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=97.59  E-value=0.00055  Score=55.87  Aligned_cols=64  Identities=22%  Similarity=0.356  Sum_probs=46.5

Q ss_pred             ceeeccCCeEEEEEEEecCC--CcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        358 DIAVKVGTRARLLVEIRSPT--EIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      +..+..|++++|.|+....+  .+.|+|+-.+.....     .. .....+|.+..+...|+|.++|.++..
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~-----~~-~~~~ktL~~~qv~~qdSG~WtC~V~~~   73 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ-----IL-NQDKKTLNLVQLGPNDSGTWDCIVSVN   73 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce-----ec-cCCccEEEeceeCcccCCEEEEEEEEC
Confidence            44678999999999995533  459999976643221     11 112235889999999999999999765

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=97.59  E-value=0.00086  Score=57.99  Aligned_cols=46  Identities=20%  Similarity=0.332  Sum_probs=35.9

Q ss_pred             CcEEEEe-cCCeEEEEEceeccCCCeEEEEEEEc-CceeEEEEEEEee
Q psy16863        190 NRFRAIN-RDGRTELNIRRVRRDDGGRYSVTASN-ESGYSTAKFELSV  235 (1075)
Q Consensus       190 ~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~n-~~g~~~~~~~l~V  235 (1075)
                      +|..+.. .-+..+|.|.+++.+|+|.|+|.+.| ..|..+..+.|.|
T Consensus        51 ~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          51 ERVTFKNPSFEDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             CcEEEcCCCCCcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            4544432 22346899999999999999999999 6788888888877

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.56  E-value=0.0003  Score=61.57  Aligned_cols=70  Identities=10%  Similarity=0.196  Sum_probs=50.9

Q ss_pred             eeeccCCeEEEEEEEec-CCCcEEEEEECCEe-----c--------CCCCcEEEEE--cCCEEEEEEcccCCCCceeEEE
Q psy16863        359 IAVKVGTRARLLVEIRS-PTEIKIHWYRNDRK-----L--------EENKIYRTQH--DGNFYFIDLSSVSLFDSGRWTC  422 (1075)
Q Consensus       359 ~~v~~G~~v~l~C~~~g-~p~~~v~W~k~g~~-----l--------~~~~~~~~~~--~g~~~~L~I~~v~~~d~G~Y~C  422 (1075)
                      +.+.+|++++|.|.... .....+.|+|....     |        ....++.+..  .+....|+|.+++.+|+|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            45789999999999854 34678999986421     1        1123454432  3456789999999999999999


Q ss_pred             EEEeCC
Q psy16863        423 LAENAV  428 (1075)
Q Consensus       423 ~a~n~~  428 (1075)
                      .+....
T Consensus        82 ~~~~~~   87 (98)
T cd05716          82 GVGDDG   87 (98)
T ss_pred             EcccCC
Confidence            987653

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.56  E-value=0.0011  Score=58.70  Aligned_cols=72  Identities=13%  Similarity=0.228  Sum_probs=47.2

Q ss_pred             ceeeccCCeEEEEEEEec-CC-CcEEEEEECCEecCCCCc-EEEEEcC-C---EEEEEEcccCCCCce-eEEEEEEeCCC
Q psy16863        358 DIAVKVGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKI-YRTQHDG-N---FYFIDLSSVSLFDSG-RWTCLAENAVG  429 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~-~~~~~~g-~---~~~L~I~~v~~~d~G-~Y~C~a~n~~g  429 (1075)
                      ......|+.++|.|.+.| .| ...++|+|||+.+..... .....++ .   .+.|.+.. ...|.| .|+|.+.+...
T Consensus        15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~l   93 (111)
T cd05772          15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRTL   93 (111)
T ss_pred             hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCCC
Confidence            334567888999999977 45 579999999999864322 1112232 2   23455553 445555 59999999754


Q ss_pred             c
Q psy16863        430 R  430 (1075)
Q Consensus       430 ~  430 (1075)
                      .
T Consensus        94 ~   94 (111)
T cd05772          94 Q   94 (111)
T ss_pred             C
Confidence            3

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.56  E-value=0.00037  Score=62.00  Aligned_cols=70  Identities=20%  Similarity=0.397  Sum_probs=47.9

Q ss_pred             EeecCCeEEEEEEEecCCCCceEEEEeCCeE---------Ee-------------cCCcEEEE-EcCCceEEEEEeeeee
Q psy16863        561 KAKIGTSAILECQVLVPPWPRSIYWYNKEGV---------VE-------------ASDKYHIM-ADGLGGYSIEINYLEA  617 (1075)
Q Consensus       561 ~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~---------i~-------------~~~~~~~~-~~~~~~~~L~i~~~~~  617 (1075)
                      .+.+|++++|.|.+........+.||+....         +.             ...++.+. ..+...+.|+|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            4678999999999876433337999975321         00             01244432 2223467899999999


Q ss_pred             cCCceEEEEEECC
Q psy16863        618 VDDGEWKCVATSS  630 (1075)
Q Consensus       618 ~d~G~Y~C~a~n~  630 (1075)
                      +|+|.|.|...+.
T Consensus        82 ~Dsg~YyCa~~~~   94 (107)
T cd07700          82 EDSGTYFCMTVGS   94 (107)
T ss_pred             HHCEEEEEeEcCC
Confidence            9999999998643

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.55  E-value=0.00052  Score=57.28  Aligned_cols=66  Identities=11%  Similarity=0.114  Sum_probs=44.2

Q ss_pred             EEEEEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCCce----EEEEEeeeeecCCceEEEEEECCCCc
Q psy16863        568 AILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGG----YSIEINYLEAVDDGEWKCVATSSSGV  633 (1075)
Q Consensus       568 ~~L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~a~n~~g~  633 (1075)
                      ++|.|.+.+..++..++|+++|..+.............+.    ..|.+..-..++...|+|.+.|....
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            6899999986556799999999987543222222222122    24666655566778899999987654

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.53  E-value=0.00034  Score=62.24  Aligned_cols=67  Identities=19%  Similarity=0.397  Sum_probs=47.9

Q ss_pred             eeccCCeEEEEEEEecC-CCcEEEEEECCEe-----c------C-----------CCCcEEE--EEcCCEEEEEEcccCC
Q psy16863        360 AVKVGTRARLLVEIRSP-TEIKIHWYRNDRK-----L------E-----------ENKIYRT--QHDGNFYFIDLSSVSL  414 (1075)
Q Consensus       360 ~v~~G~~v~l~C~~~g~-p~~~v~W~k~g~~-----l------~-----------~~~~~~~--~~~g~~~~L~I~~v~~  414 (1075)
                      .+.+|++++|.|.+.+. ....+.|||....     +      .           ...++.+  ..++....|+|.++..
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            57899999999998653 3558999984321     0      0           0124433  2345567899999999


Q ss_pred             CCceeEEEEEEe
Q psy16863        415 FDSGRWTCLAEN  426 (1075)
Q Consensus       415 ~d~G~Y~C~a~n  426 (1075)
                      +|+|.|.|...+
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999999853

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd00096 Ig Immunoglobulin domain

Probab=97.53  E-value=0.00035  Score=56.65  Aligned_cols=63  Identities=21%  Similarity=0.427  Sum_probs=46.6

Q ss_pred             EEEEEEEecCCCCeEEEEECCEEeecCCcE---EEEEeeCcEEEEEEccccCCCCeEEEEEEEeCC
Q psy16863        766 FKFTVQVSISPEPKVSWFRDDQQVVESDNV---KILKETLGVCHLKIHALEVADQAEWKCIATNDF  828 (1075)
Q Consensus       766 ~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~---~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~  828 (1075)
                      +.|.|.+.+.+.+.+.|++++.........   ...........|.|.+++.+|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            468999998788899999998766433211   011111235689999999999999999999875

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PHA03273 envelope glycoprotein C; Provisional

Probab=97.52  E-value=0.012  Score=63.28  Aligned_cols=165  Identities=17%  Similarity=0.232  Sum_probs=95.8

Q ss_pred             EEEEEcccCCCCCEEEEEEEEeCCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEec-CC--CcEEEEE
Q psy16863        308 TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS-PT--EIKIHWY  384 (1075)
Q Consensus       308 ~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g-~p--~~~v~W~  384 (1075)
                      ..|+|..++...+|.|+=+..+..|.......++|..  -.+|.+..  ..-.+.+|++..-.|.+.. .|  ...++||
T Consensus       198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~--yr~Psvsv--~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf  273 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVST--YNAPLVDL--SVHPSLKGENYRAVCVVASYFPHSSVKLRWY  273 (486)
T ss_pred             cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEE--ecCCcccc--cCCccccCCCceEEEEeeeecCCCceEEEEE
Confidence            4699999999999999877656545434444444432  13555433  3345789999999999965 33  4599999


Q ss_pred             ECCEecCCCC----cEEEEEcCCE---EEEEEcccCC-CCceeEEEEEEeCCCc-eeeEEEEEeecCCCCCCCeeeeecc
Q psy16863        385 RNDRKLEENK----IYRTQHDGNF---YFIDLSSVSL-FDSGRWTCLAENAVGR-SHCSCELSVLVPKAYKAPFFTKELE  455 (1075)
Q Consensus       385 k~g~~l~~~~----~~~~~~~g~~---~~L~I~~v~~-~d~G~Y~C~a~n~~g~-~~~s~~l~V~~~~~~~~p~~~~~~~  455 (1075)
                      +||.++....    ......+|..   ++|++..... +.-=..+|.+.=..+. +.....- .-.|..+.+|.+...  
T Consensus       274 ~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsA-t~~P~Vy~~P~Is~~--  350 (486)
T PHA03273        274 KNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAK-AGTPSVFVAPTVSVT--  350 (486)
T ss_pred             eCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccc-cccCccccCCeEEEE--
Confidence            9999987322    2222334432   3454444322 2223789998633222 2211111 112223344444433  


Q ss_pred             eEEecCCeEEEEEEEECCCC--CeEEEEeCC
Q psy16863        456 AILTEQGTVSLECKVMGIPT--PQLIWYKDN  484 (1075)
Q Consensus       456 ~~~~~g~~v~l~C~~~g~p~--~~v~W~~~g  484 (1075)
                        +..|.   ..|.+...|.  ..+.|+.++
T Consensus       351 --F~~G~---AVCtA~CVP~egV~l~W~v~D  376 (486)
T PHA03273        351 --VEDGD---AVCTAKCVPSTGVFVSWSVND  376 (486)
T ss_pred             --EeCCE---EEEecccccCCCeeEEEEccC
Confidence              33332   2477777776  589999877

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.51  E-value=0.0007  Score=58.29  Aligned_cols=66  Identities=17%  Similarity=0.261  Sum_probs=43.4

Q ss_pred             CCeEEEEEEEecC-C-CcEEEEEECCEecCCCC---cEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCC
Q psy16863        364 GTRARLLVEIRSP-T-EIKIHWYRNDRKLEENK---IYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG  429 (1075)
Q Consensus       364 G~~v~l~C~~~g~-p-~~~v~W~k~g~~l~~~~---~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g  429 (1075)
                      |+.++|.|.+.|. | ...++|+|+|..+....   ......++.........+...+.+.|+|.+.+...
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~   84 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGL   84 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence            7789999999883 4 35999999997443321   22223344443333334455688899999998754

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.50  E-value=0.00036  Score=61.54  Aligned_cols=67  Identities=15%  Similarity=0.341  Sum_probs=48.7

Q ss_pred             eeccCCeEEEEEEEecCCCcEEEEEECCE----e---c---CC------------CCcEEEEEcCCEEEEEEcccCCCCc
Q psy16863        360 AVKVGTRARLLVEIRSPTEIKIHWYRNDR----K---L---EE------------NKIYRTQHDGNFYFIDLSSVSLFDS  417 (1075)
Q Consensus       360 ~v~~G~~v~l~C~~~g~p~~~v~W~k~g~----~---l---~~------------~~~~~~~~~g~~~~L~I~~v~~~d~  417 (1075)
                      .+.+|++|+|.|.+.......+.|||...    .   |   ..            ..++....+.....|+|.+++.+|+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            46789999999998655456799998431    1   1   00            1234444555777899999999999


Q ss_pred             eeEEEEEEe
Q psy16863        418 GRWTCLAEN  426 (1075)
Q Consensus       418 G~Y~C~a~n  426 (1075)
                      |.|.|.+.+
T Consensus        82 gtY~Ca~~~   90 (104)
T cd05720          82 GYYFCSVAS   90 (104)
T ss_pred             EEEEEEEcc
Confidence            999999753

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.49  E-value=0.0011  Score=56.81  Aligned_cols=69  Identities=14%  Similarity=0.308  Sum_probs=45.7

Q ss_pred             ccCCeEEEEEEEec-CC-CcEEEEEECCEecCCC---CcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863        362 KVGTRARLLVEIRS-PT-EIKIHWYRNDRKLEEN---KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGR  430 (1075)
Q Consensus       362 ~~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~---~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~  430 (1075)
                      ..|+.++|.|.+.| .| ...++|+|||..+...   .......+|..+......+...+...|+|.+.+....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~   85 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQ   85 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence            46889999999988 44 5599999999987654   1111223334433222334455666999999987544

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.43  E-value=0.001  Score=57.01  Aligned_cols=72  Identities=17%  Similarity=0.196  Sum_probs=46.2

Q ss_pred             CeEEEEEEEecC-CCCeEEEEECCE----Eee-----------c--CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEE
Q psy16863        764 EEFKFTVQVSIS-PEPKVSWFRDDQ----QVV-----------E--SDNVKILKETLGVCHLKIHALEVADQAEWKCIAT  825 (1075)
Q Consensus       764 ~~~~l~C~v~g~-p~p~v~W~k~g~----~i~-----------~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~  825 (1075)
                      ++++|.|..... ....|+|.|-..    .+.           .  .+|+.+........+|.|.+++.+|+|.|+|...
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            468899998632 345889988421    221           0  1233333222234689999999999999999997


Q ss_pred             eC-CceEEEEE
Q psy16863        826 ND-FGQSITSC  835 (1075)
Q Consensus       826 N~-~G~~~~s~  835 (1075)
                      +. .|..+..+
T Consensus        81 t~P~g~~~~~i   91 (96)
T cd05889          81 TYPQGSWEKVI   91 (96)
T ss_pred             eCCCCCeEEEE
Confidence            64 56654443

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.42  E-value=0.0023  Score=54.41  Aligned_cols=68  Identities=15%  Similarity=0.248  Sum_probs=46.2

Q ss_pred             eccCCeEEEEEEEec-CC-CcEEEEEECCEecCCCCc---EEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCC
Q psy16863        361 VKVGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKI---YRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG  429 (1075)
Q Consensus       361 v~~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~---~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g  429 (1075)
                      +..|...+|.|.+.| .| ...++|+|||..+. +..   +....+++........+...+...|+|.+.+...
T Consensus        12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~l   84 (93)
T cd05770          12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNSM   84 (93)
T ss_pred             CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECCC
Confidence            345777899999988 33 67999999999986 321   1223345544333334456777799999998643

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.41  E-value=0.00078  Score=61.24  Aligned_cols=73  Identities=15%  Similarity=0.216  Sum_probs=50.6

Q ss_pred             ecCceeeccCCeEEEEEEEecCC------CcEEEEEECCE-----e-c--CC---------CCcEEEE--EcCCEEEEEE
Q psy16863        355 RLHDIAVKVGTRARLLVEIRSPT------EIKIHWYRNDR-----K-L--EE---------NKIYRTQ--HDGNFYFIDL  409 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~~g~p------~~~v~W~k~g~-----~-l--~~---------~~~~~~~--~~g~~~~L~I  409 (1075)
                      .|..+.+.+|+.|+|.|......      ...+.|||...     . +  ..         ..|+...  .....+.|+|
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I   84 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI   84 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence            34567889999999999875322      35799998532     1 0  00         1244442  2344568999


Q ss_pred             cccCCCCceeEEEEEEeC
Q psy16863        410 SSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       410 ~~v~~~d~G~Y~C~a~n~  427 (1075)
                      .+++.+|+|.|.|.+...
T Consensus        85 ~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          85 SDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             ccCChhhCeEEEEEEEcC
Confidence            999999999999998764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=97.41  E-value=0.002  Score=52.71  Aligned_cols=62  Identities=21%  Similarity=0.349  Sum_probs=45.8

Q ss_pred             eeecCCeEEEEEEEecCCC--CeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeC
Q psy16863        759 QATVNEEFKFTVQVSISPE--PKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND  827 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p~--p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~  827 (1075)
                      .+..|++++|+|.....+.  +.|+|+-.+....     +..  ..+...|.+.++...|+|.++|.++-+
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~-----~~~--~~~~ktL~~~qv~~qdSG~WtC~V~~~   73 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK-----QIL--NQDKKTLNLVQLGPNDSGTWDCIVSVN   73 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCccEEEeCCCCccc-----eec--cCCccEEEeceeCcccCCEEEEEEEEC
Confidence            4778999999999965444  4999987654322     111  123448999999999999999999744

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.39  E-value=0.0021  Score=54.95  Aligned_cols=68  Identities=13%  Similarity=0.278  Sum_probs=43.8

Q ss_pred             ccCCeEEEEEEEec-CC-CcEEEEEECCEecCCCC---cEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCC
Q psy16863        362 KVGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENK---IYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG  429 (1075)
Q Consensus       362 ~~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~---~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g  429 (1075)
                      ..|+..+|.|.+.| .| ...++|.|||..+..+.   ......++.........+...+...|+|.+.+...
T Consensus        13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~~~~~~ytC~V~H~~l   85 (94)
T cd05767          13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTPEEGDIYSCIVEHWGL   85 (94)
T ss_pred             cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEECCCCCeEEEEEEeCCC
Confidence            34667899999988 44 67999999999886542   12223344433222222334566699999998743

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.39  E-value=0.03  Score=59.04  Aligned_cols=168  Identities=15%  Similarity=0.208  Sum_probs=93.6

Q ss_pred             eEEEEEcccCCCCCEEEEEEEEeCCee--EEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEec-CC--CcEE
Q psy16863        307 RTELNIRRVRRDDGGRYSVTASNESGY--STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS-PT--EIKI  381 (1075)
Q Consensus       307 ~~~L~I~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g-~p--~~~v  381 (1075)
                      ...|.|.++...++|.|.....+....  ..+...+.+..   .||.+...  .-.+..|++..-.|.+.. .|  ...+
T Consensus       206 ~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~---RPPsVsV~--a~PVL~Ge~YkAtC~vAnYYPP~Svrl  280 (490)
T PHA03271        206 TMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQ---RPASVDVL--APPVLSGENYKASCIVRHFYPPGSVYV  280 (490)
T ss_pred             eeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEe---cCCCcccc--CCccccCCCceEEEEeeeecCCCceEE
Confidence            447999999999999887666653332  33344444443   35544332  235779999999999965 33  4589


Q ss_pred             EEEECCEecCCCCcEEEE------EcCCE--EEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeecCCCCCCCeeeee
Q psy16863        382 HWYRNDRKLEENKIYRTQ------HDGNF--YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKE  453 (1075)
Q Consensus       382 ~W~k~g~~l~~~~~~~~~------~~g~~--~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~  453 (1075)
                      +||+||.++.........      .++..  ++|.+.+...+.-=..+|.+.=..+....+. -..-.|..+.+|.+...
T Consensus       281 rWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~r-nAaatP~VY~~P~ISv~  359 (490)
T PHA03271        281 SWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTT-NATAIPTVYHHPRISLA  359 (490)
T ss_pred             EEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeee-ecccCCccccCCeEEEE
Confidence            999999887554321111      11222  2333333222222378999864333222121 11112333444444332


Q ss_pred             cceEEecCCeEEEEEEEECCCCC-eEEEEeCCEec
Q psy16863        454 LEAILTEQGTVSLECKVMGIPTP-QLIWYKDNKKI  487 (1075)
Q Consensus       454 ~~~~~~~g~~v~l~C~~~g~p~~-~v~W~~~g~~l  487 (1075)
                          +..|.-   .|.+...|.. .+.|+-++...
T Consensus       360 ----FedG~A---VCtA~CVP~gV~lrWlVgD~p~  387 (490)
T PHA03271        360 ----FKDGYA---ICTIECVPSGITVRWLVHDEPQ  387 (490)
T ss_pred             ----EeCCEE---EEeccccCCCcEEEEEecCCCC
Confidence                333332   3666655543 89999877654

>PHA03273 envelope glycoprotein C; Provisional

Probab=97.36  E-value=0.011  Score=63.51  Aligned_cols=80  Identities=20%  Similarity=0.302  Sum_probs=56.6

Q ss_pred             EEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCC---eEEEE
Q psy16863        405 YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTP---QLIWY  481 (1075)
Q Consensus       405 ~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~---~v~W~  481 (1075)
                      ..|+|..++..++|.|+-...+..|.......++|..   +.+|.+..... .+.+|+...-.|.+..+-++   .++||
T Consensus       198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~---yr~Psvsv~~~-PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf  273 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVST---YNAPLVDLSVH-PSLKGENYRAVCVVASYFPHSSVKLRWY  273 (486)
T ss_pred             cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEE---ecCCcccccCC-ccccCCCceEEEEeeeecCCCceEEEEE
Confidence            3589999999999999988766655544445555532   22333333322 25689999999999875443   89999


Q ss_pred             eCCEecc
Q psy16863        482 KDNKKIK  488 (1075)
Q Consensus       482 ~~g~~l~  488 (1075)
                      +||.++.
T Consensus       274 ~dg~~V~  280 (486)
T PHA03273        274 KNAKEVD  280 (486)
T ss_pred             eCCeecc
Confidence            9999987

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.35  E-value=0.00057  Score=60.28  Aligned_cols=66  Identities=15%  Similarity=0.261  Sum_probs=46.8

Q ss_pred             eecCCeEEEEEEEecCCCCeEEEEECC----EE---ee---c------------CCcEEEEEeeCcEEEEEEccccCCCC
Q psy16863        760 ATVNEEFKFTVQVSISPEPKVSWFRDD----QQ---VV---E------------SDNVKILKETLGVCHLKIHALEVADQ  817 (1075)
Q Consensus       760 ~~~g~~~~l~C~v~g~p~p~v~W~k~g----~~---i~---~------------~~~~~~~~~~~~~~~L~I~~~~~~D~  817 (1075)
                      +.+|++++|.|.+.......+.|||..    ..   |.   .            ..++..... ...+.|+|.+++.+|+
T Consensus         3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~-~~~~~L~I~~~~~sDs   81 (104)
T cd05720           3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRS-SNSFVLTLKNFQKENE   81 (104)
T ss_pred             ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEec-CCEEEEEECCCCHHHC
Confidence            678999999999875545679999843    11   11   0            122333222 3577899999999999


Q ss_pred             eEEEEEEEe
Q psy16863        818 AEWKCIATN  826 (1075)
Q Consensus       818 G~Y~C~A~N  826 (1075)
                      |.|.|.+.+
T Consensus        82 gtY~Ca~~~   90 (104)
T cd05720          82 GYYFCSVAS   90 (104)
T ss_pred             EEEEEEEcc
Confidence            999998864

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.35  E-value=0.0012  Score=56.53  Aligned_cols=70  Identities=19%  Similarity=0.266  Sum_probs=46.3

Q ss_pred             CeEEEEEEEecCCCCceEEEEeCCe----EEe-------------cCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEE
Q psy16863        566 TSAILECQVLVPPWPRSIYWYNKEG----VVE-------------ASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVAT  628 (1075)
Q Consensus       566 ~~~~L~C~~~~~p~p~~v~W~~~~~----~i~-------------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  628 (1075)
                      +.++|.|.....+.-..|+|.|...    .+.             -.+|..+...+.+..+|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            3689999987555445899988532    111             01233443333445689999999999999999975


Q ss_pred             C-CCCcee
Q psy16863        629 S-SSGVKQ  635 (1075)
Q Consensus       629 n-~~g~~~  635 (1075)
                      + ..|...
T Consensus        81 tfP~G~~~   88 (96)
T cd05887          81 TFPLGNTQ   88 (96)
T ss_pred             eCCCCCee
Confidence            4 556644

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.34  E-value=0.00097  Score=54.66  Aligned_cols=62  Identities=24%  Similarity=0.359  Sum_probs=42.4

Q ss_pred             EEEEEEEecC-CC-CeEEEEECCEEeecCCc-EEEEEeeCc----EEEEEEccccCCCCeEEEEEEEeC
Q psy16863        766 FKFTVQVSIS-PE-PKVSWFRDDQQVVESDN-VKILKETLG----VCHLKIHALEVADQAEWKCIATND  827 (1075)
Q Consensus       766 ~~l~C~v~g~-p~-p~v~W~k~g~~i~~~~~-~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~  827 (1075)
                      ++|.|.+.|. |. ..++|+|||+++..+.. .....+.++    .+.|.|.....++...|+|.+...
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~   70 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE   70 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence            6899999985 54 69999999997543211 111112222    345777776778899999999865

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.32  E-value=0.0014  Score=56.01  Aligned_cols=68  Identities=22%  Similarity=0.341  Sum_probs=46.0

Q ss_pred             CCeEEEEEEEe-cCCCCeEEEEECCEEeecCCcEEEEEeeCc----EEEEEEccccCCCCeEEEEEEEeCCce
Q psy16863        763 NEEFKFTVQVS-ISPEPKVSWFRDDQQVVESDNVKILKETLG----VCHLKIHALEVADQAEWKCIATNDFGQ  830 (1075)
Q Consensus       763 g~~~~l~C~v~-g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~~G~  830 (1075)
                      |+.+.|+|.+. |+|.|.|+|+.++..+.............+    .+.|.+..-..++...++|.|.|..-.
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            78999999765 589999999999988721111111111111    346777766677899999999997644

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.30  E-value=0.038  Score=58.31  Aligned_cols=79  Identities=11%  Similarity=0.150  Sum_probs=51.1

Q ss_pred             EEEEEcccCCCCceeEEEEEEeCCCce--eeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCC---eEE
Q psy16863        405 YFIDLSSVSLFDSGRWTCLAENAVGRS--HCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTP---QLI  479 (1075)
Q Consensus       405 ~~L~I~~v~~~d~G~Y~C~a~n~~g~~--~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~---~v~  479 (1075)
                      ..|.|.++...|+|.|.....+.....  .+...+.+...    +|.+..... .+.+|+...-.|.+..+-++   .++
T Consensus       207 m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~R----PPsVsV~a~-PVL~Ge~YkAtC~vAnYYPP~Svrlr  281 (490)
T PHA03271        207 MGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQR----PASVDVLAP-PVLSGENYKASCIVRHFYPPGSVYVS  281 (490)
T ss_pred             eeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEec----CCCccccCC-ccccCCCceEEEEeeeecCCCceEEE
Confidence            468999999999997755554433322  23333333322    233332222 25689999999999875444   889


Q ss_pred             EEeCCEecc
Q psy16863        480 WYKDNKKIK  488 (1075)
Q Consensus       480 W~~~g~~l~  488 (1075)
                      ||+||.++.
T Consensus       282 Wf~nG~~V~  290 (490)
T PHA03271        282 WRQNGNIAT  290 (490)
T ss_pred             EEeCCcccc
Confidence            999998874

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.29  E-value=0.0003  Score=53.64  Aligned_cols=51  Identities=25%  Similarity=0.488  Sum_probs=37.0

Q ss_pred             CCCeEEEEEEEEccCCCeeEEEECCEEcCCCCeeEEEECCCCceeeEEEEEEEEeC
Q psy16863        860 EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNC  915 (1075)
Q Consensus       860 ~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~~~i~~~~~~~~d~G~Y~C~a~N~  915 (1075)
                      .|.+|+|+|...+.   .++|+||+..+...+...|....+  .++|.|+|.|.|.
T Consensus         6 sGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~~~~~~~~~--e~~G~Y~C~~~~~   56 (65)
T cd07692           6 SGTTVTVTCPLSGD---DIKWKKNDQVSQGSDEKYLSLNHF--SSSGYYHCTADNA   56 (65)
T ss_pred             eccEEEEECCCCCC---CceEEeCCccCCCCCceEEeeccC--CCCceEEEEeCCC
Confidence            58899999987533   299999997776544444443333  6699999999753

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.27  E-value=0.002  Score=52.86  Aligned_cols=63  Identities=17%  Similarity=0.402  Sum_probs=41.8

Q ss_pred             eEEEEEEEecC-C-CcEEEEEECCEecCCCCc---EEEEEcCCE---EEEEEcccCCCCceeEEEEEEeCC
Q psy16863        366 RARLLVEIRSP-T-EIKIHWYRNDRKLEENKI---YRTQHDGNF---YFIDLSSVSLFDSGRWTCLAENAV  428 (1075)
Q Consensus       366 ~v~l~C~~~g~-p-~~~v~W~k~g~~l~~~~~---~~~~~~g~~---~~L~I~~v~~~d~G~Y~C~a~n~~  428 (1075)
                      .++|.|.+.|. | .+.++|+|||+++..+..   .....+|..   +.|.|.....++...|+|.+.+..
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            36899999884 4 479999999997544321   111234433   246665555567779999998864

>cd00096 Ig Immunoglobulin domain

Probab=97.27  E-value=0.0011  Score=53.46  Aligned_cols=62  Identities=26%  Similarity=0.439  Sum_probs=46.5

Q ss_pred             EEEEEEEecCCCcEEEEEECCEecCCCCcE----EEEEcCCEEEEEEcccCCCCceeEEEEEEeCC
Q psy16863        367 ARLLVEIRSPTEIKIHWYRNDRKLEENKIY----RTQHDGNFYFIDLSSVSLFDSGRWTCLAENAV  428 (1075)
Q Consensus       367 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~----~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~  428 (1075)
                      +.|.|.+.+.+...+.|++++.........    ..........|.|.++..+|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            468999988778899999998776543321    11122344578999999999999999998875

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.24  E-value=0.0024  Score=54.58  Aligned_cols=67  Identities=16%  Similarity=0.198  Sum_probs=43.9

Q ss_pred             CCeEEEEEEE-ecCCCcEEEEEECCEecCCCCc-EEEEEc-CC---EEEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863        364 GTRARLLVEI-RSPTEIKIHWYRNDRKLEENKI-YRTQHD-GN---FYFIDLSSVSLFDSGRWTCLAENAVGR  430 (1075)
Q Consensus       364 G~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~-~~~~~~-g~---~~~L~I~~v~~~d~G~Y~C~a~n~~g~  430 (1075)
                      |+.+.|.|.+ .|.|++.|+|+.++..+..... .....+ +.   .+.|.+..-..++...++|.|.|....
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            7899999987 5689999999999988722111 111222 22   235666554444556999999998654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.24  E-value=0.0018  Score=55.69  Aligned_cols=66  Identities=20%  Similarity=0.378  Sum_probs=41.7

Q ss_pred             CCeEEEEEEEecC-CCC-eEEEEECCEEeecCCc-EEEEEeeCcEEEE-EEccccCCCCeEEEEEEEeCC
Q psy16863        763 NEEFKFTVQVSIS-PEP-KVSWFRDDQQVVESDN-VKILKETLGVCHL-KIHALEVADQAEWKCIATNDF  828 (1075)
Q Consensus       763 g~~~~l~C~v~g~-p~p-~v~W~k~g~~i~~~~~-~~~~~~~~~~~~L-~I~~~~~~D~G~Y~C~A~N~~  828 (1075)
                      ++.++|.|.+.|. |.. .++|+|+|+.+..+.. -....+.++.+.+ ....+...|.+.|+|.+.+..
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~   83 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG   83 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            6789999999995 543 8999999974432211 1222233333321 223344458999999998764

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.22  E-value=0.0012  Score=57.52  Aligned_cols=72  Identities=13%  Similarity=0.210  Sum_probs=46.9

Q ss_pred             ceeeccCCeEEEEEEEec-CC-CcEEEEEECCEecCCCC---cEEEEEcCCEE---EEEEcccCCCCceeEEEEEEeCCC
Q psy16863        358 DIAVKVGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENK---IYRTQHDGNFY---FIDLSSVSLFDSGRWTCLAENAVG  429 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~---~~~~~~~g~~~---~L~I~~v~~~d~G~Y~C~a~n~~g  429 (1075)
                      ......++.++|.|.+.| .| ...|+|+|||.++..+.   ......+|...   .|.+..-...+...|+|.+.+...
T Consensus        11 ~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l   90 (100)
T cd07699          11 SEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL   90 (100)
T ss_pred             HHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence            334556788999999987 45 77999999999985431   11112245443   344443333345699999998754

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.22  E-value=0.0018  Score=58.50  Aligned_cols=70  Identities=17%  Similarity=0.258  Sum_probs=49.0

Q ss_pred             eeeeecCCeEEEEEEEecCC--CCeEEEEECC---EE--e---ec-----------CCcEEEEEee-CcEEEEEEccccC
Q psy16863        757 SCQATVNEEFKFTVQVSISP--EPKVSWFRDD---QQ--V---VE-----------SDNVKILKET-LGVCHLKIHALEV  814 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~g~p--~p~v~W~k~g---~~--i---~~-----------~~~~~~~~~~-~~~~~L~I~~~~~  814 (1075)
                      ...+..|++++|.|...+.-  ...+.|||-.   .+  |   ..           .+++...... ...+.|+|.+++.
T Consensus         6 ~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   85 (117)
T cd04981           6 PGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTP   85 (117)
T ss_pred             CeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCH
Confidence            34578999999999987543  4579999832   12  1   00           1345554333 2356899999999


Q ss_pred             CCCeEEEEEEEe
Q psy16863        815 ADQAEWKCIATN  826 (1075)
Q Consensus       815 ~D~G~Y~C~A~N  826 (1075)
                      +|+|.|-|.+..
T Consensus        86 ~Dsa~YyCa~~~   97 (117)
T cd04981          86 EDTAVYYCARGL   97 (117)
T ss_pred             HHCEEEEEEEEc
Confidence            999999998865

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.21  E-value=0.0025  Score=57.90  Aligned_cols=78  Identities=15%  Similarity=0.188  Sum_probs=48.9

Q ss_pred             cceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCCCc-----------------eeccCcEEEE--ecCCeEE
Q psy16863        142 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDH-----------------PIFGNRFRAI--NRDGRTE  202 (1075)
Q Consensus       142 ~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~~~-----------------~~~~~~~~~~--~~~~~~~  202 (1075)
                      ++.+.+.+|+.++|.|....+..+    .......+.|++....                 ....+|+...  ...+.+.
T Consensus         6 P~~v~~~~G~~VtL~C~f~~~~~~----~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~s   81 (119)
T cd05712           6 PKSVSVQEGLCVLIPCSFSYPADW----PVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCS   81 (119)
T ss_pred             CCEEEEeccccEEEEEEeeCcccc----cCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEE
Confidence            355678899999999987643210    0001123445543210                 1122466553  2455689


Q ss_pred             EEEceeccCCCeEEEEEEEcC
Q psy16863        203 LNIRRVRRDDGGRYSVTASNE  223 (1075)
Q Consensus       203 L~I~~~~~~D~G~Y~C~a~n~  223 (1075)
                      |+|.+++.+|+|.|.|.+...
T Consensus        82 L~I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          82 LLISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             EEEccCChhhCeEEEEEEEcC
Confidence            999999999999999988654

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.21  E-value=0.00061  Score=52.24  Aligned_cols=49  Identities=24%  Similarity=0.426  Sum_probs=34.4

Q ss_pred             CCeEEEEEEEEccCCCeeEEEECCEEcCCCCeeEEEECCCCceeeEEEEEEEEe
Q psy16863        861 GGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHN  914 (1075)
Q Consensus       861 g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~~~i~~~~~~~~d~G~Y~C~a~N  914 (1075)
                      .++|.|+|.+    .-+|+|+| |..+......++.+......-.|.|.|.++|
T Consensus         6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~~~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNG----ATNITWKK-GKEILEVSNTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecC----CCcEEEec-CcccccccccEEeccCcccCCCcceEecCcc
Confidence            4589999976    24599999 6666554455565544333346999999988

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.18  E-value=0.043  Score=59.18  Aligned_cols=207  Identities=15%  Similarity=0.167  Sum_probs=107.2

Q ss_pred             eEEEEEceeccCCCeEEEEEEEcCc-eeEEEEEEEeeeccCCCCCccccccccceeeccceeEEEEEecCCCceEEEEec
Q psy16863        200 RTELNIRRVRRDDGGRYSVTASNES-GYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDL  278 (1075)
Q Consensus       200 ~~~L~I~~~~~~D~G~Y~C~a~n~~-g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~  278 (1075)
                      ...|+|.+++..++|.|+=.+.+.. +.......++|...  .+|.+  .+....+.+|+.-.-.|.+..-       ..
T Consensus       288 ~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~y--r~PsV--sV~p~PVL~Ge~YkAtC~vA~Y-------YP  356 (566)
T PHA03269        288 DFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSY--KRPNI--TVIGDPVLLGNPYAAYCKVNKY-------YP  356 (566)
T ss_pred             ccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEe--cCCCc--cccCCccccCCCceEEEEeeee-------cC
Confidence            4579999999999999987765422 23333333444322  33433  3344457789999888877631       22


Q ss_pred             CCCeeeEEecCCCcccc---CCCeEEEeeCCeE---EEEEcccCCCC--CEEEEEEEEeCCee-EEEEEEEEEecCCCCC
Q psy16863        279 NNTIPFSFRAQGDHPIF---GNRFRAINRDGRT---ELNIRRVRRDD--GGRYSVTASNESGY-STAKFELSVESQVPDA  349 (1075)
Q Consensus       279 ~~~~~~~w~~~~~~~~~---~~~~~~~~~~~~~---~L~I~~~~~~d--~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~  349 (1075)
                      ..+..+.|+.+++.+..   .+.++...+|...   +|++......|  --..+|.+.-..+. ......-.+...+-.+
T Consensus       357 p~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~  436 (566)
T PHA03269        357 PHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPF  436 (566)
T ss_pred             CCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccC
Confidence            45778889888666553   2223333344332   34432221111  23569999753332 2222222222111234


Q ss_pred             CeeeeecCceeeccCCeEEEEEEEecCC--CcEEEEEECCEecCCCCcEEEEE--cCCEEEEEEcc---cCCCCc-eeEE
Q psy16863        350 PAFIRRLHDIAVKVGTRARLLVEIRSPT--EIKIHWYRNDRKLEENKIYRTQH--DGNFYFIDLSS---VSLFDS-GRWT  421 (1075)
Q Consensus       350 p~~~~~~~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~g~~l~~~~~~~~~~--~g~~~~L~I~~---v~~~d~-G~Y~  421 (1075)
                      |.+.     +.+..|.-   -|.+.--|  ...+.|+-++....... ..+..  .+......|.+   +..+|. -+|+
T Consensus       437 PtIS-----m~FedG~A---VCtA~CVP~~~V~l~WlVgD~p~~~~~-t~itG~C~ehPGLVNLRS~~pLS~~dgpveYT  507 (566)
T PHA03269        437 PNVS-----IEIIDGHI---VCLAKCVPRGVVHFNWWINDIPIEHEN-SEILGVCDNNKRFVNLQSSCDTSELDGPITYS  507 (566)
T ss_pred             CeEE-----EEEeCCEE---EEecccccCCCceEEEEecCCCCCCcc-ceeeccCCCCCCceeecccccccccCCceeEE
Confidence            4443     33444432   36654443  35899998887643332 22221  11111234444   333332 3899


Q ss_pred             EEEEe
Q psy16863        422 CLAEN  426 (1075)
Q Consensus       422 C~a~n  426 (1075)
                      |.+.-
T Consensus       508 CrL~G  512 (566)
T PHA03269        508 CHLDG  512 (566)
T ss_pred             EEEee
Confidence            99863

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.14  E-value=0.0028  Score=54.28  Aligned_cols=68  Identities=12%  Similarity=0.216  Sum_probs=43.3

Q ss_pred             cCCeEEEEEEEec-CC-CcEEEEEECCEecCCCC---cEEEEEcCCEE---EEEEcccCCCCceeEEEEEEeCCCc
Q psy16863        363 VGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENK---IYRTQHDGNFY---FIDLSSVSLFDSGRWTCLAENAVGR  430 (1075)
Q Consensus       363 ~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~---~~~~~~~g~~~---~L~I~~v~~~d~G~Y~C~a~n~~g~  430 (1075)
                      .++.++|.|.+.| .| ...|+|+|||..+..+.   ......++...   .|.|..-...+...|+|.+.+....
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~   88 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT   88 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence            4567999999988 44 57999999999874321   11122333322   3444433333556999999987544

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.14  E-value=0.0026  Score=54.52  Aligned_cols=65  Identities=14%  Similarity=0.140  Sum_probs=43.4

Q ss_pred             CeEEEEEEE-ecCCCCeEEEEECCEEeecCCcEEEEEeeCc----EEEEEEccccCCCCeEEEEEEEeCCceE
Q psy16863        764 EEFKFTVQV-SISPEPKVSWFRDDQQVVESDNVKILKETLG----VCHLKIHALEVADQAEWKCIATNDFGQS  831 (1075)
Q Consensus       764 ~~~~l~C~v-~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~~G~~  831 (1075)
                      ....+.|.+ .|+|.+.|+|+++.   ............++    .+.|.+.....+|.-.|+|+|.|..-..
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~   85 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQE   85 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence            457789998 47899999999971   11111111111122    3478887778888999999999986443

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.13  E-value=0.0027  Score=56.40  Aligned_cols=76  Identities=12%  Similarity=0.320  Sum_probs=48.3

Q ss_pred             CceeeccCCeEEEEEEEec-CC-CcEEEEEECCEecCCCCc---EEEEEc-CCE---EEEEEcccCCCC-ceeEEEEEEe
Q psy16863        357 HDIAVKVGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKI---YRTQHD-GNF---YFIDLSSVSLFD-SGRWTCLAEN  426 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~---~~~~~~-g~~---~~L~I~~v~~~d-~G~Y~C~a~n  426 (1075)
                      ....+.+++.++|.|.+.| .| ...|+|+|||..+..+..   .....+ |..   +.|.|..-...+ ...|+|.+.+
T Consensus        11 s~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H   90 (115)
T cd05769          11 SEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQF   90 (115)
T ss_pred             ChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEE
Confidence            3444556788999999987 44 469999999998865422   122222 332   245555433334 4599999998


Q ss_pred             CCCcee
Q psy16863        427 AVGRSH  432 (1075)
Q Consensus       427 ~~g~~~  432 (1075)
                      ......
T Consensus        91 ~g~~~~   96 (115)
T cd05769          91 YGGTDT   96 (115)
T ss_pred             eCCccc
Confidence            855443

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.11  E-value=0.0015  Score=54.79  Aligned_cols=59  Identities=25%  Similarity=0.314  Sum_probs=41.5

Q ss_pred             eEEEEEEEecCCCC--eEEEEECCE-----Eee-------------cCCcEEEEEee-CcEEEEEEccccCCCCeEEEEE
Q psy16863        765 EFKFTVQVSISPEP--KVSWFRDDQ-----QVV-------------ESDNVKILKET-LGVCHLKIHALEVADQAEWKCI  823 (1075)
Q Consensus       765 ~~~l~C~v~g~p~p--~v~W~k~g~-----~i~-------------~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~  823 (1075)
                      ++.|.|.+.....+  .+.|+|...     .+.             ...++.+.... .+...|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            47899998865543  899998541     111             12345544432 5678999999999999999996

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.11  E-value=0.004  Score=52.28  Aligned_cols=69  Identities=14%  Similarity=0.326  Sum_probs=46.1

Q ss_pred             ccCCeEEEEEEEec-CC-CcEEEEEECCEecCCCCcEE--E-EEcCCEEEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863        362 KVGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKIYR--T-QHDGNFYFIDLSSVSLFDSGRWTCLAENAVGR  430 (1075)
Q Consensus       362 ~~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~~~--~-~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~  430 (1075)
                      ..++.++|.|.+.+ .| ...|+|+++|..+.......  . ..+|.........+...+...|+|.+.+....
T Consensus         6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ysC~V~H~~l~   79 (83)
T PF07654_consen    6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVTWNSGDEYSCRVTHESLP   79 (83)
T ss_dssp             HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEETTTTGGEEEEEEETTSS
T ss_pred             cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEecCCCCCEEEEEEEECCCC
Confidence            34899999999987 44 56999999999987654322  1 23444432222233355666999999988654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.10  E-value=0.0025  Score=55.59  Aligned_cols=71  Identities=14%  Similarity=0.325  Sum_probs=44.6

Q ss_pred             eeeccCCeEEEEEEEec-CC-CcEEEEEECCEecCCCCcE--EEEE----cCCEE---EEEEcccCCCCceeEEEEEEeC
Q psy16863        359 IAVKVGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKIY--RTQH----DGNFY---FIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       359 ~~v~~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~~--~~~~----~g~~~---~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      ..+..|..++|.|.+.| .| ...++|+|||+++......  ....    +|...   .|.|..-...+...|+|.+.+.
T Consensus        11 ~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~   90 (102)
T cd05768          11 EELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHE   90 (102)
T ss_pred             HHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeC
Confidence            34455788999999988 33 5688999999987643211  1111    24333   4545332223455899999987


Q ss_pred             CC
Q psy16863        428 VG  429 (1075)
Q Consensus       428 ~g  429 (1075)
                      ..
T Consensus        91 ~l   92 (102)
T cd05768          91 AL   92 (102)
T ss_pred             CC
Confidence            54

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.09  E-value=0.0025  Score=57.52  Aligned_cols=71  Identities=17%  Similarity=0.267  Sum_probs=50.0

Q ss_pred             cCceeeccCCeEEEEEEEecCC--CcEEEEEECC--E-e--c---C-----------CCCcEEEEEcC--CEEEEEEccc
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPT--EIKIHWYRND--R-K--L---E-----------ENKIYRTQHDG--NFYFIDLSSV  412 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~g--~-~--l---~-----------~~~~~~~~~~g--~~~~L~I~~v  412 (1075)
                      +....+.+|++++|.|...+..  ...+.|||-.  + +  |   .           ...++....+.  ....|+|.++
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   83 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL   83 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence            4556789999999999985432  4579999832  1 1  1   0           01345454333  4557999999


Q ss_pred             CCCCceeEEEEEEe
Q psy16863        413 SLFDSGRWTCLAEN  426 (1075)
Q Consensus       413 ~~~d~G~Y~C~a~n  426 (1075)
                      ..+|+|.|.|.+..
T Consensus        84 ~~~Dsa~YyCa~~~   97 (117)
T cd04981          84 TPEDTAVYYCARGL   97 (117)
T ss_pred             CHHHCEEEEEEEEc
Confidence            99999999998864

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.09  E-value=0.0016  Score=55.93  Aligned_cols=74  Identities=8%  Similarity=0.151  Sum_probs=44.4

Q ss_pred             CceeeccCCeEEEEEEEecC--C-CcEEEEEECCEec-CCC-CcEEEEEcCCEEEEEEcccCCC---CceeEEEEEEeCC
Q psy16863        357 HDIAVKVGTRARLLVEIRSP--T-EIKIHWYRNDRKL-EEN-KIYRTQHDGNFYFIDLSSVSLF---DSGRWTCLAENAV  428 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~--p-~~~v~W~k~g~~l-~~~-~~~~~~~~g~~~~L~I~~v~~~---d~G~Y~C~a~n~~  428 (1075)
                      +...+..|+.++|.|.+.|.  | ...|+|+|||+.. ... .......+|.........+..+   +.-.|+|.+.+..
T Consensus         7 s~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~   86 (96)
T cd07696           7 SPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD   86 (96)
T ss_pred             CHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence            34456678999999999886  4 5699999997533 211 1112223444432222223333   3348999999875


Q ss_pred             Cc
Q psy16863        429 GR  430 (1075)
Q Consensus       429 g~  430 (1075)
                      ..
T Consensus        87 l~   88 (96)
T cd07696          87 LP   88 (96)
T ss_pred             CC
Confidence            43

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.05  E-value=0.0052  Score=54.41  Aligned_cols=68  Identities=16%  Similarity=0.312  Sum_probs=44.4

Q ss_pred             eeecCCeEEEEEEEec-CC-CCeEEEEECCEEeecCCcEEEEEeeCc-----EEEEEEccccCCCCe-EEEEEEEeCC
Q psy16863        759 QATVNEEFKFTVQVSI-SP-EPKVSWFRDDQQVVESDNVKILKETLG-----VCHLKIHALEVADQA-EWKCIATNDF  828 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g-~p-~p~v~W~k~g~~i~~~~~~~~~~~~~~-----~~~L~I~~~~~~D~G-~Y~C~A~N~~  828 (1075)
                      ....|+.++|.|.+.| .| ...++|+|||+.+..... ......++     .+.|.+.. ...|.| .|+|.+....
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~   92 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT   92 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence            3457888999999998 46 369999999999864322 12222222     23466654 444444 5999998864

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.01  E-value=0.0046  Score=52.93  Aligned_cols=69  Identities=17%  Similarity=0.235  Sum_probs=44.5

Q ss_pred             cCCeEEEEEEEec-CCC-CeEEEEECCEEeecCC-cEEEEEeeCc----EEEEEEccccCCCCeEEEEEEEeCCce
Q psy16863        762 VNEEFKFTVQVSI-SPE-PKVSWFRDDQQVVESD-NVKILKETLG----VCHLKIHALEVADQAEWKCIATNDFGQ  830 (1075)
Q Consensus       762 ~g~~~~l~C~v~g-~p~-p~v~W~k~g~~i~~~~-~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~~G~  830 (1075)
                      .+..+.|.|.+.| .|. ..|+|+|||+.+..+. ........++    .+.|.|......+...|+|.+......
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~   88 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT   88 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence            4466899999998 464 6899999999873221 1011111222    235666655556788999999876433

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>KOG1480|consensus

Probab=96.93  E-value=0.00025  Score=79.79  Aligned_cols=184  Identities=20%  Similarity=0.277  Sum_probs=111.6

Q ss_pred             CCCccccccccceeeccceeEEEEEecCCCce--EEEEecCCCeeeEEecCCC--ccccCCCeEEEeeCC---eEEEEEc
Q psy16863        241 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEI--KCQFDLNNTIPFSFRAQGD--HPIFGNRFRAINRDG---RTELNIR  313 (1075)
Q Consensus       241 ~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~--~c~~~~~~~~~~~w~~~~~--~~~~~~~~~~~~~~~---~~~L~I~  313 (1075)
                      ..|.|+..+.+..+..+.++.++|...+.+.+  +|.-      .  |.....  .....+..    ++-   .....|.
T Consensus        23 ~l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~------~--wv~~~~~~~~~~~d~t----sg~~~~~~si~Is   90 (909)
T KOG1480|consen   23 DLPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNS------E--WVHQSRHEKLEGTDET----SGLGVREVSIDIS   90 (909)
T ss_pred             CcceeeecCCccceecCCCccceecCCcccccccccCh------h--hhcCccceeeeccCcc----cceeEEeeeeeee
Confidence            34678888888889999999999998876543  2321      1  111111  11100000    010   0123344


Q ss_pred             ccCCCCCE---EE--EEEEEeCCee-EEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEE-ecCCCcEEEEEEC
Q psy16863        314 RVRRDDGG---RY--SVTASNESGY-STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEI-RSPTEIKIHWYRN  386 (1075)
Q Consensus       314 ~~~~~d~G---~Y--~C~a~n~~g~-~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~-~g~p~~~v~W~k~  386 (1075)
                      .-..++.|   .|  .|.|....|. .+..+.+.+.+   ..-.|...+.-..|..+....|.|.. .+.|...++|+|+
T Consensus        91 r~~v~~~~~~~d~~cQc~a~~~~g~~~s~~a~vr~ay---~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~  167 (909)
T KOG1480|consen   91 RQQVETSGGPEDYWCQCVAWSDDGTVKSRKATVRIAY---LRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKN  167 (909)
T ss_pred             hhhhhcccCccceeeeeeeecCCCcchhhhHHHHHHH---HHHhhccChhhheecccccccccccCcccchhhhhhcccc
Confidence            33333333   45  5666666663 12222222221   12235555666788889999999986 6788899999999


Q ss_pred             CEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCcee-eEEEEEeecC
Q psy16863        387 DRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSH-CSCELSVLVP  442 (1075)
Q Consensus       387 g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~-~s~~l~V~~~  442 (1075)
                      +..+.+...+....+.+   |.|..+...|.|+|+|+|.|..+... ..+.+.|.+.
T Consensus       168 e~~~~pd~n~~~~~d~~---li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv~  221 (909)
T KOG1480|consen  168 EVVIDPDANVIRASDHN---LIISQARLSDSGNYTCEATNIVAKRKSDPATVQVYVN  221 (909)
T ss_pred             CCCCCccccchhhhcCC---ccccchhhhhcccceeeeehhhccccccceEEEEEEc
Confidence            99888765555555544   78899999999999999999877653 3444555443

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=96.90  E-value=0.007  Score=51.88  Aligned_cols=69  Identities=16%  Similarity=0.227  Sum_probs=44.2

Q ss_pred             CeEEEEEEEecCCCCceEEEEeCCe----EEe-----------c--CCcEEEEEcCCceEEEEEeeeeecCCceEEEEEE
Q psy16863        566 TSAILECQVLVPPWPRSIYWYNKEG----VVE-----------A--SDKYHIMADGLGGYSIEINYLEAVDDGEWKCVAT  628 (1075)
Q Consensus       566 ~~~~L~C~~~~~p~p~~v~W~~~~~----~i~-----------~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  628 (1075)
                      +.++|.|.......-..++|.|.+.    .+.           .  .+|..+........+|.|.+++.+|+|.|+|...
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            4688999986543334788988532    111           0  1233333222234689999999999999999986


Q ss_pred             CC-CCce
Q psy16863        629 SS-SGVK  634 (1075)
Q Consensus       629 n~-~g~~  634 (1075)
                      .. .|..
T Consensus        81 t~P~g~~   87 (96)
T cd05889          81 TYPQGSW   87 (96)
T ss_pred             eCCCCCe
Confidence            54 4553

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>smart00406 IGv Immunoglobulin V-Type

Probab=96.87  E-value=0.0033  Score=52.62  Aligned_cols=59  Identities=19%  Similarity=0.245  Sum_probs=41.0

Q ss_pred             eEEEEEEEecCCC--cEEEEEECCE--e---c-------------CCCCcEEEEEc--CCEEEEEEcccCCCCceeEEEE
Q psy16863        366 RARLLVEIRSPTE--IKIHWYRNDR--K---L-------------EENKIYRTQHD--GNFYFIDLSSVSLFDSGRWTCL  423 (1075)
Q Consensus       366 ~v~l~C~~~g~p~--~~v~W~k~g~--~---l-------------~~~~~~~~~~~--g~~~~L~I~~v~~~d~G~Y~C~  423 (1075)
                      +++|.|.+.....  ..+.|++...  .   +             ....++.+...  .....|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            4789999876544  3899998541  1   1             01234444443  5667899999999999999996


Q ss_pred             E
Q psy16863        424 A  424 (1075)
Q Consensus       424 a  424 (1075)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            3

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=96.85  E-value=0.0028  Score=55.26  Aligned_cols=71  Identities=13%  Similarity=0.128  Sum_probs=45.3

Q ss_pred             eecCCeEEEEEEEecC-CCCceEEEEeCCeEEecCCc-EEEEEcCCceE----EEEEeeeeecCCceEEEEEECCCC
Q psy16863        562 AKIGTSAILECQVLVP-PWPRSIYWYNKEGVVEASDK-YHIMADGLGGY----SIEINYLEAVDDGEWKCVATSSSG  632 (1075)
Q Consensus       562 v~~G~~~~L~C~~~~~-p~p~~v~W~~~~~~i~~~~~-~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~g  632 (1075)
                      ...++.++|.|.+.+. |....++|+++|..+..+.. .....++.+.|    .|.+..-..++...|+|.+.+...
T Consensus        14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l   90 (100)
T cd07699          14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL   90 (100)
T ss_pred             HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence            4457889999999984 54668999999988743211 11122222333    344544444457889999998653

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=96.85  E-value=0.0058  Score=52.22  Aligned_cols=64  Identities=14%  Similarity=0.092  Sum_probs=42.5

Q ss_pred             CeEEEEEEEe-cCCCCeEEEEECCEEeecCCcEEEEEeeCc----EEEEEEccccCCCCeEEEEEEEeCCce
Q psy16863        764 EEFKFTVQVS-ISPEPKVSWFRDDQQVVESDNVKILKETLG----VCHLKIHALEVADQAEWKCIATNDFGQ  830 (1075)
Q Consensus       764 ~~~~l~C~v~-g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~~G~  830 (1075)
                      ..+.+.|.+. |.|.+.|+|+++....   .........++    .+.|.+.....+|.-.|+|+|.|..-.
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~---~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~   84 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGN---ANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQ   84 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCC---eeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence            4578999876 6899999999982111   11111111111    346888777788999999999997644

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=96.84  E-value=0.01  Score=50.59  Aligned_cols=69  Identities=13%  Similarity=0.160  Sum_probs=46.1

Q ss_pred             ecCCeEEEEEEEec-CCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEE-EeeeeecCCceEEEEEECCC
Q psy16863        563 KIGTSAILECQVLV-PPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIE-INYLEAVDDGEWKCVATSSS  631 (1075)
Q Consensus       563 ~~G~~~~L~C~~~~-~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~-i~~~~~~d~G~Y~C~a~n~~  631 (1075)
                      ..|+..+|.|.+.+ .|....++|+++|..+..........++.+.|.+. ...+...+...|+|.+.+..
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~   83 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS   83 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence            34777899999998 56666899999999875211122334444444432 22355677888999999854

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.80  E-value=0.0031  Score=54.22  Aligned_cols=72  Identities=14%  Similarity=0.172  Sum_probs=43.2

Q ss_pred             EeecCCeEEEEEEEecC--CCCceEEEEeCCeEEecCCcEEEEEcCCceEE----EEEeeeeecCCceEEEEEECCCC
Q psy16863        561 KAKIGTSAILECQVLVP--PWPRSIYWYNKEGVVEASDKYHIMADGLGGYS----IEINYLEAVDDGEWKCVATSSSG  632 (1075)
Q Consensus       561 ~v~~G~~~~L~C~~~~~--p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~----L~i~~~~~~d~G~Y~C~a~n~~g  632 (1075)
                      .+..|+.++|.|.+.+.  |....++|.++++.......-....++.+.|.    |.+..-...+.-.|+|.+.+...
T Consensus        10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l   87 (96)
T cd07696          10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL   87 (96)
T ss_pred             HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence            35568999999999998  76678999998754321100011122222332    33433333345569999998753

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=96.80  E-value=0.8  Score=48.41  Aligned_cols=121  Identities=12%  Similarity=0.197  Sum_probs=75.9

Q ss_pred             CceeeccCCeEEEEEEEec--C-CCcEEEEEECCEecCC-----------------CCcEEEEEc------CCEEEEEEc
Q psy16863        357 HDIAVKVGTRARLLVEIRS--P-TEIKIHWYRNDRKLEE-----------------NKIYRTQHD------GNFYFIDLS  410 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g--~-p~~~v~W~k~g~~l~~-----------------~~~~~~~~~------g~~~~L~I~  410 (1075)
                      ....+..|..+.|.|.++-  + ....++|+--|-++.+                 ...+.+...      -..++|+|.
T Consensus       272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk  351 (500)
T PHA02914        272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK  351 (500)
T ss_pred             ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence            4566778999999999854  2 2458899987755431                 223333322      134689999


Q ss_pred             ccCCCCceeEEEEEEeCCCceeeEEEEEeecCCCCCCCeeeeecceEEecCC-eEEEEEEEECC--CCCeEEEEeCCEec
Q psy16863        411 SVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGI--PTPQLIWYKDNKKI  487 (1075)
Q Consensus       411 ~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~-~v~l~C~~~g~--p~~~v~W~~~g~~l  487 (1075)
                      ++..+.+|-|+|+|....-...+..=|.|....     .|..     ..+|. .....|.+-..  .++.+.|.-+|...
T Consensus       352 ka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V-----~f~W-----~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~  421 (500)
T PHA02914        352 KAHINNAGCYEAQAFMGKFKEECRHCFKVADHV-----FFKW-----NTEGDNETKVACYAAQYDMQPFSILWKSNGVSF  421 (500)
T ss_pred             eEEEEcCCceEEEEecCcchhhhhhheEeccEE-----EEEE-----EeccCceEEEEEEEEecccCCceeEEEEccEEe
Confidence            999999999999998754333333333333210     1111     23443 46678987644  34579999888654

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.77  E-value=0.0037  Score=54.57  Aligned_cols=71  Identities=15%  Similarity=0.215  Sum_probs=43.7

Q ss_pred             eecCCeEEEEEEEecC-CCCceEEEEeCCeEEecCCcEE--EEEc--CCceEE----EEEeeeeecCCceEEEEEECCCC
Q psy16863        562 AKIGTSAILECQVLVP-PWPRSIYWYNKEGVVEASDKYH--IMAD--GLGGYS----IEINYLEAVDDGEWKCVATSSSG  632 (1075)
Q Consensus       562 v~~G~~~~L~C~~~~~-p~p~~v~W~~~~~~i~~~~~~~--~~~~--~~~~~~----L~i~~~~~~d~G~Y~C~a~n~~g  632 (1075)
                      +..|..++|.|.+.|. |....++|++++..+.......  ...+  +.+.|.    |.|..-...+...|+|.+.+...
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l   92 (102)
T cd05768          13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL   92 (102)
T ss_pred             hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence            3347889999999984 5455889999998865332111  1111  123333    44433333456789999998654

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=96.76  E-value=0.0076  Score=51.61  Aligned_cols=67  Identities=12%  Similarity=0.293  Sum_probs=42.2

Q ss_pred             eeeccCCeEEEEEEEec-CC-CcEEEEEECCEecCCCCc-EEEEEcCCEE----EEEEcccCCCCce-eEEEEEEeCC
Q psy16863        359 IAVKVGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKI-YRTQHDGNFY----FIDLSSVSLFDSG-RWTCLAENAV  428 (1075)
Q Consensus       359 ~~v~~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~-~~~~~~g~~~----~L~I~~v~~~d~G-~Y~C~a~n~~  428 (1075)
                      ..+..+..++|.|.+.| .| ...++|.|||..+..+.. .....+++.+    .|.|   +.++.| .|+|.+.+..
T Consensus        11 ~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~v---t~~~~~~~ysC~V~H~g   85 (96)
T cd07697          11 KEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTV---TKDSLGKKFRCIYKHEG   85 (96)
T ss_pred             HHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEE---CchhCCCeEEEEEEECC
Confidence            34445678999999988 34 679999999998754421 1122233333    3333   343334 5999999854

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=96.73  E-value=0.012  Score=50.39  Aligned_cols=68  Identities=9%  Similarity=0.035  Sum_probs=41.4

Q ss_pred             CeEEEEEEE-ecCCCcEEEEEECCEecCCCCcE--EEEEcCC---EEEEEEcccCCCCceeEEEEEEeCCCceeeEE
Q psy16863        365 TRARLLVEI-RSPTEIKIHWYRNDRKLEENKIY--RTQHDGN---FYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC  435 (1075)
Q Consensus       365 ~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~--~~~~~g~---~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~  435 (1075)
                      ....+.|.+ .|.|+++|+|+++.   ......  ....+|.   .+.|.+.....+|.-.|+|++.|..-......
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~   89 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRF   89 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEE
Confidence            356788998 67999999999972   111111  1222333   23566654444444599999999875544333

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=96.70  E-value=0.0045  Score=47.64  Aligned_cols=50  Identities=26%  Similarity=0.476  Sum_probs=38.3

Q ss_pred             cCCeEEEEEEEECCCCCeEEEEeCCEeccCCCEEEEEeCCCCCCCcEEEEEEEEe
Q psy16863        460 EQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVN  514 (1075)
Q Consensus       460 ~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~~~~l~i~~~~~~d~G~Y~C~a~n  514 (1075)
                      ..++|.|.|.+    ...|+|++ |..+......+|.+.....+-.|.|.|.+++
T Consensus         5 ~~~~V~L~C~~----~tsi~W~k-G~~~~~~~~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           5 SEGKVFLKCNG----ATNITWKK-GKEILEVSNTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             cCceEEEEecC----CCcEEEec-CcccccccccEEeccCcccCCCcceEecCcc
Confidence            35689999965    24699999 6666555466777777777778999999987

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.63  E-value=0.023  Score=47.71  Aligned_cols=70  Identities=21%  Similarity=0.251  Sum_probs=46.0

Q ss_pred             cCCeEEEEEEEec-CCCCceEEEEeCCeEEecCCcEEEEE-cCCceEEEE-EeeeeecCCceEEEEEECCCCc
Q psy16863        564 IGTSAILECQVLV-PPWPRSIYWYNKEGVVEASDKYHIMA-DGLGGYSIE-INYLEAVDDGEWKCVATSSSGV  633 (1075)
Q Consensus       564 ~G~~~~L~C~~~~-~p~p~~v~W~~~~~~i~~~~~~~~~~-~~~~~~~L~-i~~~~~~d~G~Y~C~a~n~~g~  633 (1075)
                      .++.++|.|.+.+ .|....|.|++++..+.......... ++.+.|.+. ...+...+...|+|.+.+....
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ysC~V~H~~l~   79 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVTWNSGDEYSCRVTHESLP   79 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEETTTTGGEEEEEEETTSS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEecCCCCCEEEEEEEECCCC
Confidence            3889999999997 45566899999999875443322221 233444322 2233366777899999987654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=96.61  E-value=0.015  Score=50.00  Aligned_cols=71  Identities=17%  Similarity=0.271  Sum_probs=45.5

Q ss_pred             ecCCeEEEEEEEec-CCCCceEEEEeCCeEEecC-CcEEEEEcCCceEEE-EEeeeeecCCceEEEEEECCCCc
Q psy16863        563 KIGTSAILECQVLV-PPWPRSIYWYNKEGVVEAS-DKYHIMADGLGGYSI-EINYLEAVDDGEWKCVATSSSGV  633 (1075)
Q Consensus       563 ~~G~~~~L~C~~~~-~p~p~~v~W~~~~~~i~~~-~~~~~~~~~~~~~~L-~i~~~~~~d~G~Y~C~a~n~~g~  633 (1075)
                      ..|+.++|.|.+.+ .|....++|+++|..+... .......++.+.+.+ ..-.+...+...|+|.+.+....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~   85 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQ   85 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence            35889999999998 4555589999999887543 111223333333332 12234455677899999987543

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=96.61  E-value=0.023  Score=48.61  Aligned_cols=68  Identities=12%  Similarity=0.114  Sum_probs=43.4

Q ss_pred             cCCeEEEEEEEec-CCCCceEEEEeCCeEEecCCc-EEEEEcCCceEEEE-EeeeeecCCceEEEEEECCC
Q psy16863        564 IGTSAILECQVLV-PPWPRSIYWYNKEGVVEASDK-YHIMADGLGGYSIE-INYLEAVDDGEWKCVATSSS  631 (1075)
Q Consensus       564 ~G~~~~L~C~~~~-~p~p~~v~W~~~~~~i~~~~~-~~~~~~~~~~~~L~-i~~~~~~d~G~Y~C~a~n~~  631 (1075)
                      .|+..+|.|.+.| .|....++|.++|..+..+.. .....++.+.|.+. .-.+.+.+...|+|.+.+..
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~~~~~~ytC~V~H~~   84 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTPEEGDIYSCIVEHWG   84 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEECCCCCeEEEEEEeCC
Confidence            4667899999998 566678999999988754321 12233333334321 11234456778999998864

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=96.60  E-value=0.0094  Score=50.94  Aligned_cols=72  Identities=11%  Similarity=0.047  Sum_probs=43.8

Q ss_pred             eEEEEEEE-ecCCCcEEEEEECCEecCCCCcEEEEEcCC---EEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEE
Q psy16863        366 RARLLVEI-RSPTEIKIHWYRNDRKLEENKIYRTQHDGN---FYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELS  438 (1075)
Q Consensus       366 ~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~---~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~  438 (1075)
                      ...+.|.+ .|.|++.|+|+++...... .......+|.   .+.|.+.....+|.-.|+|++.|..-.......+.
T Consensus        17 ~~va~C~s~~gkPaa~IsW~~~~~g~~~-~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~   92 (95)
T cd07703          17 VPVAKCVSANGRPPARISWSSTLGGNAN-TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVT   92 (95)
T ss_pred             cEEEEEEcCCCCCCcEEEEEcCCCCCee-EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence            56789987 5789999999998321110 1111223444   23566655444455599999999876555444443

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=96.58  E-value=0.0042  Score=47.52  Aligned_cols=51  Identities=27%  Similarity=0.427  Sum_probs=36.1

Q ss_pred             ecCCeEEEEEEEECCCCCeEEEEeCCEeccCCCEEEEEeCCCCCCCcEEEEEEEEe
Q psy16863        459 TEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVN  514 (1075)
Q Consensus       459 ~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~~~~l~i~~~~~~d~G~Y~C~a~n  514 (1075)
                      ..|.+|+|+|...+.   .+.|.+|+..+...+. .+...+-. +++|.|+|.+.+
T Consensus         5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~-~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSDE-KYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             EeccEEEEECCCCCC---CceEEeCCccCCCCCc-eEEeeccC-CCCceEEEEeCC
Confidence            358899999986532   2999999977765433 33333333 789999999965

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.52  E-value=0.018  Score=49.39  Aligned_cols=65  Identities=8%  Similarity=0.121  Sum_probs=40.1

Q ss_pred             cCCeEEEEEEEec-CC-CcEEEEEECCEecCCCCc--EEEEE-cCCEE---EEEEcccCCCCceeEEEEEEeCC
Q psy16863        363 VGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKI--YRTQH-DGNFY---FIDLSSVSLFDSGRWTCLAENAV  428 (1075)
Q Consensus       363 ~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~--~~~~~-~g~~~---~L~I~~v~~~d~G~Y~C~a~n~~  428 (1075)
                      .++.++|.|.+.| .| ...|+|+|||.. ..+..  ..+.. +|...   .|.+..-.-.....|+|++.+..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            4667999999988 33 679999999998 33211  01222 45443   34443221112458999999874

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.34  E-value=0.019  Score=48.89  Aligned_cols=73  Identities=10%  Similarity=0.095  Sum_probs=46.2

Q ss_pred             CceeeccCCeEEE-EEEE-ecCCCcEEEEEECCEecCCCCcEEEEEcCCE---EEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863        357 HDIAVKVGTRARL-LVEI-RSPTEIKIHWYRNDRKLEENKIYRTQHDGNF---YFIDLSSVSLFDSGRWTCLAENAVGR  430 (1075)
Q Consensus       357 ~~~~v~~G~~v~l-~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~---~~L~I~~v~~~d~G~Y~C~a~n~~g~  430 (1075)
                      ....+.+|+.+.+ .|.+ .|.|+++|+|+.+..... ........+|..   +.|.+.....+|.-.++|.+.+.+-.
T Consensus         9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~   86 (97)
T cd07704           9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQ   86 (97)
T ss_pred             CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccC
Confidence            4456788999999 8887 678999999998743322 111112223432   24555444444555999999988653

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PHA02982 hypothetical protein; Provisional

Probab=96.22  E-value=0.045  Score=51.98  Aligned_cols=120  Identities=15%  Similarity=0.211  Sum_probs=77.6

Q ss_pred             CceeeccCCeEEEEEEEe-cCCCcEEEEEECCE-ecC----------C--------CCcEEEEEcCCEEEEEEcccCCCC
Q psy16863        357 HDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDR-KLE----------E--------NKIYRTQHDGNFYFIDLSSVSLFD  416 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~-g~p~~~v~W~k~g~-~l~----------~--------~~~~~~~~~g~~~~L~I~~v~~~d  416 (1075)
                      .++....+++|.|.|... +..-....|++++. .|.          .        ...+....+|+.++|+|.++..+.
T Consensus        32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N  111 (251)
T PHA02982         32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN  111 (251)
T ss_pred             hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence            456677899999999963 23345789998652 221          1        124566778999999999999999


Q ss_pred             ceeEEEEEEeCCCceee-EEEEEeecCCCCCCCeeeeecceEEecC-CeEEEEEEEECCCCCeEEEEeCCEe
Q psy16863        417 SGRWTCLAENAVGRSHC-SCELSVLVPKAYKAPFFTKELEAILTEQ-GTVSLECKVMGIPTPQLIWYKDNKK  486 (1075)
Q Consensus       417 ~G~Y~C~a~n~~g~~~~-s~~l~V~~~~~~~~p~~~~~~~~~~~~g-~~v~l~C~~~g~p~~~v~W~~~g~~  486 (1075)
                      .|-|+|+|....+..+. ..=|.|+....    .+.      ..++ ....+.|-+-....+...|.-+|..
T Consensus       112 ~GCYtc~~ks~~~k~E~c~kCl~V~~~~V----~~~------W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv  173 (251)
T PHA02982        112 LGCFTCEAKDAEGKEETCEKCLEIQKEDI----LYV------VEEHNNETIITCFVGSKHGDVPRFIVAGIV  173 (251)
T ss_pred             CCceEEEEecCCCchheeheeeeEecceE----EEE------EEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence            99999999987655432 33344422110    121      2223 3567889886544333388877653

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=96.22  E-value=0.02  Score=50.98  Aligned_cols=73  Identities=15%  Similarity=0.227  Sum_probs=45.4

Q ss_pred             eecCCeEEEEEEEecC-CCCceEEEEeCCeEEecCCcE--EEEEcCCceE----EEEEeeeeecC-CceEEEEEECCCCc
Q psy16863        562 AKIGTSAILECQVLVP-PWPRSIYWYNKEGVVEASDKY--HIMADGLGGY----SIEINYLEAVD-DGEWKCVATSSSGV  633 (1075)
Q Consensus       562 v~~G~~~~L~C~~~~~-p~p~~v~W~~~~~~i~~~~~~--~~~~~~~~~~----~L~i~~~~~~d-~G~Y~C~a~n~~g~  633 (1075)
                      +..++.++|.|.+.+. |....++|++++..+..+...  ....++.+.|    .|+|......+ .-.|+|.+.+....
T Consensus        15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~   94 (115)
T cd05769          15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT   94 (115)
T ss_pred             hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence            4456789999999985 444689999999887543211  1111211233    35555444434 56799999987554


Q ss_pred             e
Q psy16863        634 K  634 (1075)
Q Consensus       634 ~  634 (1075)
                      .
T Consensus        95 ~   95 (115)
T cd05769          95 D   95 (115)
T ss_pred             c
Confidence            3

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.15  E-value=0.014  Score=50.02  Aligned_cols=75  Identities=21%  Similarity=0.235  Sum_probs=44.1

Q ss_pred             ccceEeecCCeEEEEEEEec-C-CCCceEEEEeCCeEEecCCcEEEEEcCCceE----EEEEeeeeecCCceEEEEEECC
Q psy16863        557 VENVKAKIGTSAILECQVLV-P-PWPRSIYWYNKEGVVEASDKYHIMADGLGGY----SIEINYLEAVDDGEWKCVATSS  630 (1075)
Q Consensus       557 ~~~~~v~~G~~~~L~C~~~~-~-p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~  630 (1075)
                      +....+..+..++|.|.+.+ . |.+..++|.++++. . ...-....+..+.|    .|.|..-.......|+|.+.+.
T Consensus        11 Ps~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~-~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~   88 (99)
T cd04986          11 PALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-E-AVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHP   88 (99)
T ss_pred             cChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-C-cEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECC
Confidence            33334556889999999998 4 55679999999875 1 10001111212222    3444433333445599999987


Q ss_pred             CCc
Q psy16863        631 SGV  633 (1075)
Q Consensus       631 ~g~  633 (1075)
                      ...
T Consensus        89 ~l~   91 (99)
T cd04986          89 EGD   91 (99)
T ss_pred             Ccc
Confidence            643

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.10  E-value=0.043  Score=47.96  Aligned_cols=69  Identities=7%  Similarity=0.076  Sum_probs=47.8

Q ss_pred             cCceeeccCCeEEEEEEEecCC--C-cEEEEEECCE-ec--------------CCCCcEE--EEEcCCEEEEEEcccCCC
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPT--E-IKIHWYRNDR-KL--------------EENKIYR--TQHDGNFYFIDLSSVSLF  415 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p--~-~~v~W~k~g~-~l--------------~~~~~~~--~~~~g~~~~L~I~~v~~~  415 (1075)
                      +....+..|..++|.|+++|..  . ..++|+|.-. .+              ....++.  -....+...|.|.+++.+
T Consensus         5 ~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~   84 (115)
T cd05721           5 QSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRAN   84 (115)
T ss_pred             cCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHH
Confidence            3556778899999999997743  3 5789998321 11              0112222  223456678999999999


Q ss_pred             CceeEEEEE
Q psy16863        416 DSGRWTCLA  424 (1075)
Q Consensus       416 d~G~Y~C~a  424 (1075)
                      |++.|.|..
T Consensus        85 DTa~Y~Ca~   93 (115)
T cd05721          85 QTDIYFCKI   93 (115)
T ss_pred             HCeEEEEEe
Confidence            999999985

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=96.10  E-value=0.034  Score=47.68  Aligned_cols=67  Identities=12%  Similarity=0.083  Sum_probs=40.0

Q ss_pred             cCCeEEEEEEEec-CCCCceEEEEeCCeEEecCCc-EEEEEcCCceEEEE-Eeeeeec-CCceEEEEEECCC
Q psy16863        564 IGTSAILECQVLV-PPWPRSIYWYNKEGVVEASDK-YHIMADGLGGYSIE-INYLEAV-DDGEWKCVATSSS  631 (1075)
Q Consensus       564 ~G~~~~L~C~~~~-~p~p~~v~W~~~~~~i~~~~~-~~~~~~~~~~~~L~-i~~~~~~-d~G~Y~C~a~n~~  631 (1075)
                      .+..++|.|.+.+ .|....++|.++|..+..+.. .....++. .|.+. --.+..+ ....|+|.+.+..
T Consensus        15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~d-ty~~~S~L~vt~~~~~~~ysC~V~H~g   85 (96)
T cd07697          15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDND-VYSTTSWLTVTKDSLGKKFRCIYKHEG   85 (96)
T ss_pred             cCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCC-EEEEEEEEEECchhCCCeEEEEEEECC
Confidence            3677999999998 566678999999987643311 11222322 33321 1123333 2344999998854

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=96.09  E-value=2.4  Score=44.95  Aligned_cols=124  Identities=14%  Similarity=0.206  Sum_probs=76.6

Q ss_pred             cceeeeecCCeEEEEEEEec--CC-CCeEEEEECCEEee-----------------cCCcEEEEEe-----eCcEEEEEE
Q psy16863        755 LKSCQATVNEEFKFTVQVSI--SP-EPKVSWFRDDQQVV-----------------ESDNVKILKE-----TLGVCHLKI  809 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g--~p-~p~v~W~k~g~~i~-----------------~~~~~~~~~~-----~~~~~~L~I  809 (1075)
                      ..+..+..|..+.|.|..+-  +- -..++|+--|-++.                 ..+.+.+...     +...++|+|
T Consensus       271 ~~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTI  350 (500)
T PHA02914        271 FDEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTI  350 (500)
T ss_pred             cceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEe
Confidence            34566788999999999874  33 34789987664332                 1233444322     234578999


Q ss_pred             ccccCCCCeEEEEEEEeCCceEEEEEEEEEEecCCCCCCeeeeecceeecCCC-eEEEEEEEEcc--CCCeeEEEECCEE
Q psy16863        810 HALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGG-AVNLECKVIGV--PQPTLKWFKDGRE  886 (1075)
Q Consensus       810 ~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~-~~~L~C~v~g~--p~p~v~W~k~g~~  886 (1075)
                      ++++.+.+|=|.|+|....-.....--|.|...      .+...    ..+|. .....|-+-..  -++.+.|.-+|..
T Consensus       351 kka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~------V~f~W----~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~  420 (500)
T PHA02914        351 KKAHINNAGCYEAQAFMGKFKEECRHCFKVADH------VFFKW----NTEGDNETKVACYAAQYDMQPFSILWKSNGVS  420 (500)
T ss_pred             eeEEEEcCCceEEEEecCcchhhhhhheEeccE------EEEEE----EeccCceEEEEEEEEecccCCceeEEEEccEE
Confidence            999999999999999875333333323333211      11111    12433 55678887543  2356999999975


Q ss_pred             cC
Q psy16863        887 LK  888 (1075)
Q Consensus       887 l~  888 (1075)
                      ..
T Consensus       421 ~~  422 (500)
T PHA02914        421 FG  422 (500)
T ss_pred             ec
Confidence            43

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.01  E-value=0.024  Score=48.57  Aligned_cols=73  Identities=15%  Similarity=0.266  Sum_probs=44.5

Q ss_pred             ecCceeeccCCeEEEEEEEec-C-C-CcEEEEEECCEecCCC-CcEEEEEcCCEE---EEEEcccCCCCce-eEEEEEEe
Q psy16863        355 RLHDIAVKVGTRARLLVEIRS-P-T-EIKIHWYRNDRKLEEN-KIYRTQHDGNFY---FIDLSSVSLFDSG-RWTCLAEN  426 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~~g-~-p-~~~v~W~k~g~~l~~~-~~~~~~~~g~~~---~L~I~~v~~~d~G-~Y~C~a~n  426 (1075)
                      ++....+..+..++|.|.+.+ . | ...|+|.++|.. ... .......++...   .|.|.. ..-.+| .|+|++.+
T Consensus        10 pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~-~~W~~g~~ytC~V~H   87 (99)
T cd04986          10 RPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCA-EEWNKGEPFACTVTH   87 (99)
T ss_pred             CcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCH-HHhcCCCeEEEEEEC
Confidence            344445557889999999988 3 4 579999999975 111 111122344433   344432 222445 69999998


Q ss_pred             CCC
Q psy16863        427 AVG  429 (1075)
Q Consensus       427 ~~g  429 (1075)
                      ...
T Consensus        88 ~~l   90 (99)
T cd04986          88 PEG   90 (99)
T ss_pred             CCc
Confidence            754

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PRK14081 triple tyrosine motif-containing protein; Provisional

Probab=96.00  E-value=4.6  Score=47.36  Aligned_cols=451  Identities=12%  Similarity=0.062  Sum_probs=221.2

Q ss_pred             ceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEE--EEEEeCCCc----e
Q psy16863        358 DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWT--CLAENAVGR----S  431 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~--C~a~n~~g~----~  431 (1075)
                      ...+..|+.+.|.......+ .-++.+-++    .+....++.-+....|..   +...+|.|.  |.+.+....    +
T Consensus       106 ~~~l~vGe~l~~~V~~~~e~-~LYKF~I~~----~~~w~~iqDYst~n~lsy---t~~~~G~Y~ll~~~Kd~~S~~~fDD  177 (667)
T PRK14081        106 KDTLNVGEKIEIKVDSNKEP-LMYRYWIKE----DNNWKLIKDYSTENSLSY---TANKPGKYELLVECKRIDSTKDFDD  177 (667)
T ss_pred             CccccCCCEEEEEEEeccCc-EEEEEEEcC----CCcEEEEEecCCcceEEE---EecCCCcEEEEEEEecCCCccccCc
Confidence            34577999999987764433 333333222    122222333333333433   456888886  556554332    2


Q ss_pred             eeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEEC--CCCCeEEEEe---CCEeccCCC---EEEEEeCCCCCC
Q psy16863        432 HCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMG--IPTPQLIWYK---DNKKIKAGD---IFALTANPKDPS  503 (1075)
Q Consensus       432 ~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g--~p~~~v~W~~---~g~~l~~~~---~~~l~i~~~~~~  503 (1075)
                      .+....+|...+....-.|. .+...+..|+.+.|...+.+  .-...++..+   +|......+   ...+...   +.
T Consensus       178 ~~~v~y~Vk~~~~v~I~~F~-~lns~~i~~~eI~f~~~a~~~~g~~~LYKF~~i~~~G~~~~~qdYst~n~~~y~---~~  253 (667)
T PRK14081        178 FKKVKFKVKEIDKVEITDFK-CLNKELICDEELVFEVESVYEEDRTILYKFVKIDSDGKQTCIQDYSTKNIVSYK---EK  253 (667)
T ss_pred             ceEEEEEcccCcceEEEecc-ccCcceecCcEEEEEEEEEeCCCceEEEEEEEECCCCCEEEecCccccceEEEE---eC
Confidence            33444444433221111122 22223445888888865543  3333555544   553332211   1122222   44


Q ss_pred             CcEEE--EEEEEecceee----EEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeee--ccceEeecCCeEEEEEEEe
Q psy16863        504 SLGTY--TCEAVNCMGAA----FSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKE--VENVKAKIGTSAILECQVL  575 (1075)
Q Consensus       504 d~G~Y--~C~a~n~~g~~----~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~G~~~~L~C~~~  575 (1075)
                      .+|.|  .|.+.+.....    .+.....|.                  +..|+.+..-  -.+.....|+.+.|.+.+.
T Consensus       254 ~~G~Y~i~~~VKD~~S~~eyDD~~~l~y~Vk------------------~~~~vkI~~~~~d~~s~ql~g~~I~ika~a~  315 (667)
T PRK14081        254 KSGDYKLLCLVKDMYSNNEFDDRAVLVYTVK------------------PYKDIKIRNFTTDLSSPQLTDTDIELKAVAE  315 (667)
T ss_pred             CCccEEEEEEEeccCcccccccceEEEEEEe------------------cCCCcEEEEEEEcCCCCeecCceEEEEEEec
Confidence            57888  45555543322    222223332                  1122222111  1122346799999999999


Q ss_pred             cCCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEE--CCCCceee---eeEEEEEeCCCCcC
Q psy16863        576 VPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVAT--SSSGVKQF---SAAYVHVLMPKNYR  650 (1075)
Q Consensus       576 ~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~--n~~g~~~~---~~~~l~v~~p~~~~  650 (1075)
                      |.. ...+.....|..+... .+..      ...+.   -.+..+|.|...+.  +.......   ......+..  ...
T Consensus       316 GG~-~llYrf~I~G~~~e~~-~Y~~------~n~~~---w~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~--~~~  382 (667)
T PRK14081        316 GGK-ELLYRFIIKGKESEDS-GYIR------NNIYT---WKPKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEE--KSK  382 (667)
T ss_pred             CCC-ceEEEEEECCcEEeec-cccc------cceEE---EeeCCCceEEEEEEEEcCcCcccccceEEEEEEEcc--cCC
Confidence            866 3356555455443211 1110      01222   23446777765543  33322211   112222222  112


Q ss_pred             CCce----eeccceeeecCCeEEEEEEEecCCCCeEE-EE-ECCEEcCC-----CCeEEEeecCCCceEEEE--EEecCc
Q psy16863        651 KPRF----VESLKAVMTDDGLVSFECKVVGFPTPTLQ-WF-KDNEELKP-----GDVYQLTGTSSLGSYCCV--AKNVMG  717 (1075)
Q Consensus       651 ~p~~----~~~~~~~~~~g~~~~l~C~v~g~p~p~v~-W~-k~g~~l~~-----~~~~~~~~~~d~G~Y~C~--a~N~~g  717 (1075)
                      .|..    +.+....+..|+++.+.|.+.|.-...+. |. ++|..+..     +..+.+. ..-+|.|+..  |.|...
T Consensus       383 ~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~~Y~~~~~~~f~-P~~~G~Y~IeV~vKdk~S  461 (667)
T PRK14081        383 EPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKIDYGKNNWVNFI-PEEKGNYELEVRVKDKYS  461 (667)
T ss_pred             CCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEeecccccEEEEE-ECCCeeEEEEEEEecccC
Confidence            2321    11222345568899999999876555444 33 47776642     2233333 3578999765  455444


Q ss_pred             e----EEEEEEEEEEeccccCchhhhhhhccCCCCCeEEe---ccceeeeecCCeEEEEEEEecCCCCeEEE--EECCEE
Q psy16863        718 K----AESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIE---GLKSCQATVNEEFKFTVQVSISPEPKVSW--FRDDQQ  788 (1075)
Q Consensus       718 ~----~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~g~~~~l~C~v~g~p~p~v~W--~k~g~~  788 (1075)
                      .    +...+.+.|.+                 ..|..+.   .+.......|+.++|+|.+.+.-...+..  +.+|..
T Consensus       462 ~~~yD~~k~v~l~V~e-----------------~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~  524 (667)
T PRK14081        462 DKEYDAHTIVYIKVHE-----------------YIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGHK  524 (667)
T ss_pred             chhcccceEEEEEEec-----------------cCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEE
Confidence            3    33456777765                 3454222   12234478999999999999865554443  446655


Q ss_pred             eecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEE--EeCCce----EEEEEEEEEEecCCCCCCeeeeecceeecCCC
Q psy16863        789 VVESDNVKILKETLGVCHLKIHALEVADQAEWKCIA--TNDFGQ----SITSCFLKLNVPKHYKKPKFLEELKAVLSEGG  862 (1075)
Q Consensus       789 i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A--~N~~G~----~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~  862 (1075)
                      +...+ +    ....  .+.+.   +.-+|.|+..+  .|....    +.....+.|..+..+.-..+ ..-...+..|+
T Consensus       525 v~~t~-Y----s~~~--~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~~pi~nt~~-~~~~~~~~~n~  593 (667)
T PRK14081        525 VEETD-Y----IKNK--KYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREALPITNTKI-KTSKKKFKCNE  593 (667)
T ss_pred             EEEee-c----cccc--eEEEe---ecCCceEEEEEEEcccccccccccceEEEEEEcCCCCceeeEE-EeecceEEcCC
Confidence            42211 0    0111  22222   56678888754  455443    22345666665422211111 11122356788


Q ss_pred             eEEEEEEEEccCCCeeEE
Q psy16863        863 AVNLECKVIGVPQPTLKW  880 (1075)
Q Consensus       863 ~~~L~C~v~g~p~p~v~W  880 (1075)
                      .+++++...|.-..-++.
T Consensus       594 ~~t~~~~~~gg~~v~Yef  611 (667)
T PRK14081        594 EVTFSVKSEGGKDVCYEF  611 (667)
T ss_pred             eEEEEEEccCCCcEEEEE
Confidence            999999998876666654

>PHA02633 hypothetical protein; Provisional

Probab=95.88  E-value=0.025  Score=42.38  Aligned_cols=37  Identities=24%  Similarity=0.328  Sum_probs=32.7

Q ss_pred             EEEEEceeccCCCeEEEEEEEcCceeEEEEEEEeeec
Q psy16863        201 TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES  237 (1075)
Q Consensus       201 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~  237 (1075)
                      ..|.|-++..+|+|.|.|...|..-....++.|+|..
T Consensus        18 ~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~   54 (63)
T PHA02633         18 NNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL   54 (63)
T ss_pred             ccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence            3699999999999999999999888888888888863

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=95.86  E-value=0.035  Score=46.91  Aligned_cols=68  Identities=12%  Similarity=0.238  Sum_probs=43.9

Q ss_pred             eeccCCeEEEEEEEec-CC--CcEEEEEECCEecCCCCcEEE----EEcCCEEEEEEcccCCCCce-eEEEEEEeCC
Q psy16863        360 AVKVGTRARLLVEIRS-PT--EIKIHWYRNDRKLEENKIYRT----QHDGNFYFIDLSSVSLFDSG-RWTCLAENAV  428 (1075)
Q Consensus       360 ~v~~G~~v~l~C~~~g-~p--~~~v~W~k~g~~l~~~~~~~~----~~~g~~~~L~I~~v~~~d~G-~Y~C~a~n~~  428 (1075)
                      .+.+|..+++.|.+.+ .|  ...|.|+|+...+....-...    ........++|.. +.+|.| .|+|+|.-..
T Consensus        11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l   86 (99)
T cd07689          11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHI   86 (99)
T ss_pred             cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEee
Confidence            4589999999999965 44  368999998877754431110    0111223455544 477777 9999997543

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>KOG1480|consensus

Probab=95.65  E-value=0.0036  Score=70.86  Aligned_cols=176  Identities=23%  Similarity=0.321  Sum_probs=101.4

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEE----cCCE---EEEEEcccCCCCce--
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQH----DGNF---YFIDLSSVSLFDSG--  418 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~----~g~~---~~L~I~~v~~~d~G--  418 (1075)
                      ..|.|+..+.+..+..|.++.|.|.++.  .++|...-++.-+..+....+..    .|..   ..+.|..-..++.|  
T Consensus        23 ~l~~~~~~p~~~yii~~~p~~l~c~a~~--a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~  100 (909)
T KOG1480|consen   23 DLPHFTTEPKSAYIIKNKPLRLQCKANP--ATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGP  100 (909)
T ss_pred             CcceeeecCCccceecCCCccceecCCc--ccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCc
Confidence            4577888888889999999999999854  33443322332232222221111    1111   12233333333333  


Q ss_pred             -eEEE--EEEeCCCceeeEEEEEeecCCCCCCCeeee-ecceEEecCCeEEEEEEE-ECCCCCeEEEEeCCEeccCCCEE
Q psy16863        419 -RWTC--LAENAVGRSHCSCELSVLVPKAYKAPFFTK-ELEAILTEQGTVSLECKV-MGIPTPQLIWYKDNKKIKAGDIF  493 (1075)
Q Consensus       419 -~Y~C--~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~-~~~~~~~~g~~v~l~C~~-~g~p~~~v~W~~~g~~l~~~~~~  493 (1075)
                       .|.|  .|....|... +-.-.|...  +....|.. +....+..+..+.+.|.. .+.|...+.|+|++..+.+....
T Consensus       101 ~d~~cQc~a~~~~g~~~-s~~a~vr~a--y~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~  177 (909)
T KOG1480|consen  101 EDYWCQCVAWSDDGTVK-SRKATVRIA--YLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANV  177 (909)
T ss_pred             cceeeeeeeecCCCcch-hhhHHHHHH--HHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccc
Confidence             4654  5666656221 111111111  01112222 223347777888888885 58888999999999988774433


Q ss_pred             ------EEEeCCCCCCCcEEEEEEEEecceeeEEE-EEEEEe
Q psy16863        494 ------ALTANPKDPSSLGTYTCEAVNCMGAAFST-SRVIAR  528 (1075)
Q Consensus       494 ------~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~v~v~  528 (1075)
                            .+++..+...|.|+|+|+|.|..+..... +.+.+.
T Consensus       178 ~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy  219 (909)
T KOG1480|consen  178 IRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVY  219 (909)
T ss_pred             hhhhcCCccccchhhhhcccceeeeehhhccccccceEEEEE
Confidence                  46677888999999999999988765432 334443

>PHA02982 hypothetical protein; Provisional

Probab=95.64  E-value=0.12  Score=49.20  Aligned_cols=121  Identities=15%  Similarity=0.241  Sum_probs=73.8

Q ss_pred             ceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEec-------------------CCcEEEEEcCCceEEEEEeeeeecC
Q psy16863        559 NVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEA-------------------SDKYHIMADGLGGYSIEINYLEAVD  619 (1075)
Q Consensus       559 ~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~-------------------~~~~~~~~~~~~~~~L~i~~~~~~d  619 (1075)
                      ++....++++.|.|.......-.+..|+++++-..+                   ...+.+..++ ...+|+|+++..+.
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g-~~STLTIkk~~i~N  111 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSG-NSSTFTMKKPDPQN  111 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEec-cceeEEeccCCccc
Confidence            345667999999999654443347899987654322                   1234444455 45689999999999


Q ss_pred             CceEEEEEECCCCceeeeeEEEEEeCCCCcCCCceeeccceeeecCCeEEEEEEEecCCCCeEEEEECCE
Q psy16863        620 DGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNE  689 (1075)
Q Consensus       620 ~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~  689 (1075)
                      .|=|+|.+....+..+.-..-+.|+...      +.-.   ...-.....+.|-+-....+-..|.-+|.
T Consensus       112 ~GCYtc~~ks~~~k~E~c~kCl~V~~~~------V~~~---W~e~nNeT~V~CyVgS~~~dvp~W~V~GV  172 (251)
T PHA02982        112 LGCFTCEAKDAEGKEETCEKCLEIQKED------ILYV---VEEHNNETIITCFVGSKHGDVPRFIVAGI  172 (251)
T ss_pred             CCceEEEEecCCCchheeheeeeEecce------EEEE---EEecCCeEEEEEEEEeccCCCccEEEeeE
Confidence            9999999998766554312223332110      0000   11122356788988654433348988775

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=95.63  E-value=0.012  Score=52.62  Aligned_cols=80  Identities=20%  Similarity=0.217  Sum_probs=48.6

Q ss_pred             eecCCeEEEEEEEec-----CCCCeEEEEECCEEeecC--CcEE----------EEEeeCcEEEEEEccccCCCCeEEEE
Q psy16863        760 ATVNEEFKFTVQVSI-----SPEPKVSWFRDDQQVVES--DNVK----------ILKETLGVCHLKIHALEVADQAEWKC  822 (1075)
Q Consensus       760 ~~~g~~~~l~C~v~g-----~p~p~v~W~k~g~~i~~~--~~~~----------~~~~~~~~~~L~I~~~~~~D~G~Y~C  822 (1075)
                      ..-++++.|.|.+..     .+...|.|.++|+.|...  ....          +..-..|..+|.+...+.- .|.|+|
T Consensus        24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC  102 (130)
T PF08204_consen   24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC  102 (130)
T ss_dssp             -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred             EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence            456899999999974     134579999999877421  1111          1001123456888776655 899999


Q ss_pred             EEEeCCceEEEEEEEEEE
Q psy16863        823 IATNDFGQSITSCFLKLN  840 (1075)
Q Consensus       823 ~A~N~~G~~~~s~~l~V~  840 (1075)
                      .+.+...+.+..+.|...
T Consensus       103 eVt~~~~ege~~i~Lk~~  120 (130)
T PF08204_consen  103 EVTELSREGETTIELKYR  120 (130)
T ss_dssp             EEEETTEEEEEEEEEEE-
T ss_pred             EEEecCCCceEEEEEEEE
Confidence            999988777777777664

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PHA02633 hypothetical protein; Provisional

Probab=95.51  E-value=0.04  Score=41.33  Aligned_cols=37  Identities=16%  Similarity=0.276  Sum_probs=31.1

Q ss_pred             EEEcccCCCCceeEEEEEEeCCCceeeEEEEEeecCC
Q psy16863        407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPK  443 (1075)
Q Consensus       407 L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~  443 (1075)
                      |.|.++..+|+|.|.|...|..-....+..|+|....
T Consensus        20 Lwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~   56 (63)
T PHA02633         20 MLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI   56 (63)
T ss_pred             EEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence            7788999999999999999987777778888776543

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=95.18  E-value=0.16  Score=44.53  Aligned_cols=66  Identities=11%  Similarity=0.093  Sum_probs=45.5

Q ss_pred             eeecCCeEEEEEEEecCCC---CeEEEEECCE-Eee--------------cCCcEEEEEe-eCcEEEEEEccccCCCCeE
Q psy16863        759 QATVNEEFKFTVQVSISPE---PKVSWFRDDQ-QVV--------------ESDNVKILKE-TLGVCHLKIHALEVADQAE  819 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p~---p~v~W~k~g~-~i~--------------~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~  819 (1075)
                      .+..|..++|.|.++|.-.   -.++|+|.-. .+.              ...++.+..+ ..+...|.|.+++.+|++.
T Consensus         9 lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~   88 (115)
T cd05721           9 LASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDI   88 (115)
T ss_pred             EEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeE
Confidence            3668889999999987543   4689988421 110              1123333322 2346789999999999999


Q ss_pred             EEEEE
Q psy16863        820 WKCIA  824 (1075)
Q Consensus       820 Y~C~A  824 (1075)
                      |.|.-
T Consensus        89 Y~Ca~   93 (115)
T cd05721          89 YFCKI   93 (115)
T ss_pred             EEEEe
Confidence            99986

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=95.15  E-value=0.074  Score=44.98  Aligned_cols=68  Identities=7%  Similarity=0.053  Sum_probs=43.0

Q ss_pred             eecCCeEEEEEEEec-CCC--CeEEEEECCEEeecCCcEEE---EEeeCcEEEEEEccccCCCCe-EEEEEEEeCC
Q psy16863        760 ATVNEEFKFTVQVSI-SPE--PKVSWFRDDQQVVESDNVKI---LKETLGVCHLKIHALEVADQA-EWKCIATNDF  828 (1075)
Q Consensus       760 ~~~g~~~~l~C~v~g-~p~--p~v~W~k~g~~i~~~~~~~~---~~~~~~~~~L~I~~~~~~D~G-~Y~C~A~N~~  828 (1075)
                      +.+|..++++|.+.+ .|.  .++.|+|+...+....-..-   .........++|... .+|.| .|+|.|.=..
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~l   86 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLHI   86 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEee
Confidence            578999999999985 454  68999997766653321110   001112346666664 55555 9999996443

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>KOG4597|consensus

Probab=95.08  E-value=0.031  Score=59.94  Aligned_cols=92  Identities=16%  Similarity=0.033  Sum_probs=65.8

Q ss_pred             eEEeccceeeeecCCeEEEEEEEecCCCCeEEEEE---CCEEeecCCcEEEE-EeeCcEEEEEEccccCCCCeEEEEEEE
Q psy16863        750 KFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFR---DDQQVVESDNVKIL-KETLGVCHLKIHALEVADQAEWKCIAT  825 (1075)
Q Consensus       750 ~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k---~g~~i~~~~~~~~~-~~~~~~~~L~I~~~~~~D~G~Y~C~A~  825 (1075)
                      .+..-+....+..+++..++|-+.|.|.+.|+|.+   |+..+.--..-.+. ..-..++.|.|-+....|+|.|+|.|.
T Consensus       198 ~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~r  277 (560)
T KOG4597|consen  198 ALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSAR  277 (560)
T ss_pred             ccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccc
Confidence            33334445567789999999999999999999954   44333211111110 011136789999999999999999999


Q ss_pred             eCCceEEEEEEEEEEe
Q psy16863        826 NDFGQSITSCFLKLNV  841 (1075)
Q Consensus       826 N~~G~~~~s~~l~V~~  841 (1075)
                      |.+|....++.+.+..
T Consensus       278 cg~g~~~rdv~c~s~~  293 (560)
T KOG4597|consen  278 CGAGFLRRDVPCSSVK  293 (560)
T ss_pred             cccceeeccceeeeec
Confidence            9999988888777653

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.05  E-value=0.1  Score=44.75  Aligned_cols=66  Identities=18%  Similarity=0.264  Sum_probs=39.5

Q ss_pred             cCCeEEEEEEEec-CCCCceEEEEeCCeEEecCCc--EEEEEcCCceEE----EEEeeeeecCCceEEEEEECCC
Q psy16863        564 IGTSAILECQVLV-PPWPRSIYWYNKEGVVEASDK--YHIMADGLGGYS----IEINYLEAVDDGEWKCVATSSS  631 (1075)
Q Consensus       564 ~G~~~~L~C~~~~-~p~p~~v~W~~~~~~i~~~~~--~~~~~~~~~~~~----L~i~~~~~~d~G~Y~C~a~n~~  631 (1075)
                      .++.++|.|.+.+ .|....++|+++|.. ..+..  .....+ .+.|.    |++..-.....-.|+|.+.+..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~-dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQS-GGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCC-CCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            3567999999998 465668999999987 32210  011121 12232    3433322223667999999864

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=94.93  E-value=0.046  Score=48.99  Aligned_cols=78  Identities=12%  Similarity=0.194  Sum_probs=44.3

Q ss_pred             eccCCeEEEEEEEec-----CCCcEEEEEECCEecCC---C-CcEE--------E--EEcCCEEEEEEcccCCCCceeEE
Q psy16863        361 VKVGTRARLLVEIRS-----PTEIKIHWYRNDRKLEE---N-KIYR--------T--QHDGNFYFIDLSSVSLFDSGRWT  421 (1075)
Q Consensus       361 v~~G~~v~l~C~~~g-----~p~~~v~W~k~g~~l~~---~-~~~~--------~--~~~g~~~~L~I~~v~~~d~G~Y~  421 (1075)
                      ..-++++.|.|.+..     -+...|+|.++|..+-.   . .+..        +  ...|. ..|.+.....- .|.|+
T Consensus        24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~-aSL~~~~~~a~-~GnYT  101 (130)
T PF08204_consen   24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGN-ASLKMDKSDAV-EGNYT  101 (130)
T ss_dssp             -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB---EEEEHHHHH--EEEE
T ss_pred             EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCC-EEEEEcchhcc-ccceE
Confidence            456889999999954     13568999999987621   1 1110        0  01111 23666554333 89999


Q ss_pred             EEEEeCCCceeeEEEEEee
Q psy16863        422 CLAENAVGRSHCSCELSVL  440 (1075)
Q Consensus       422 C~a~n~~g~~~~s~~l~V~  440 (1075)
                      |.+.......+....|...
T Consensus       102 CeVt~~~~ege~~i~Lk~~  120 (130)
T PF08204_consen  102 CEVTELSREGETTIELKYR  120 (130)
T ss_dssp             EEEEETTEEEEEEEEEEE-
T ss_pred             EEEEecCCCceEEEEEEEE
Confidence            9999887777766666653

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=94.56  E-value=0.24  Score=42.30  Aligned_cols=67  Identities=10%  Similarity=0.106  Sum_probs=44.6

Q ss_pred             eeecCCeEEE-EEEEe-cCCCCeEEEEECCEEeecCCcEEEEEeeCc----EEEEEEccccCCCCeEEEEEEEeCC
Q psy16863        759 QATVNEEFKF-TVQVS-ISPEPKVSWFRDDQQVVESDNVKILKETLG----VCHLKIHALEVADQAEWKCIATNDF  828 (1075)
Q Consensus       759 ~~~~g~~~~l-~C~v~-g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~~  828 (1075)
                      .+..|+.+.+ .|.+. |.|.++|+|+.+..-...   .......+|    .++|.+.....+|.-.++|++....
T Consensus        12 ~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~---~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a   84 (97)
T cd07704          12 LIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE---SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA   84 (97)
T ss_pred             EeecCcceeEEEEEccCCccCCEeEEeCCCCCccc---eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence            4667888888 88865 689999999987432210   111111111    3467777777889999999998763

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=93.92  E-value=0.89  Score=38.81  Aligned_cols=45  Identities=36%  Similarity=0.548  Sum_probs=33.0

Q ss_pred             cCcEEEEecCCeEEEEEceeccCCCeEEEEEEEcCceeE-EEEEEEee
Q psy16863        189 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSV  235 (1075)
Q Consensus       189 ~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V  235 (1075)
                      .+|+.+...+-  .|.|+.++..|+|.|..++.|..|.. ...+.|.|
T Consensus        61 n~r~~F~~enl--aLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   61 NNRFNFTSENL--ALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             HHHEEEETTTT--EEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             cceEeeeccCc--eEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            35676666655  89999999999999999999998887 33444444

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PHA03042 CD47-like protein; Provisional

Probab=93.34  E-value=0.22  Score=50.00  Aligned_cols=68  Identities=15%  Similarity=0.200  Sum_probs=44.5

Q ss_pred             cCCCeEEEEEEEEcc-----CCCeeEEEECCEEcCCCCe---eEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEE
Q psy16863        859 SEGGAVNLECKVIGV-----PQPTLKWFKDGRELKAGDI---HKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLG  927 (1075)
Q Consensus       859 ~~g~~~~L~C~v~g~-----p~p~v~W~k~g~~l~~~~~---~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v  927 (1075)
                      .-++++.+.|.+..-     ....|+|..||+.+...+.   ..+.... ...-.|+|||+|.+..-+.....+|.-
T Consensus        29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~~IeLk~  104 (286)
T PHA03042         29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTNTSSLKFNF-SKNLSGNYTCEAINKFNKIKNTIELQY  104 (286)
T ss_pred             ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCcceEEEEec-cccCCCceeEEEeecccCccEEEEEEE
Confidence            357899999999542     2456999999998753222   2232221 123379999999997766666666543

>KOG4597|consensus

Probab=92.81  E-value=0.14  Score=55.06  Aligned_cols=92  Identities=12%  Similarity=0.036  Sum_probs=66.6

Q ss_pred             CeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEE---CCEec--CCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEE
Q psy16863        350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYR---NDRKL--EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLA  424 (1075)
Q Consensus       350 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k---~g~~l--~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a  424 (1075)
                      +.+..-+....+..|++..+.|-+.|.+.+.|.|-+   |+..+  ..+..+.--.-..+..|.|-+....|+|.|+|.+
T Consensus       197 c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~  276 (560)
T KOG4597|consen  197 CALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSA  276 (560)
T ss_pred             cccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecc
Confidence            344555666778899999999999999999999965   33322  2111111111123456899999999999999999


Q ss_pred             EeCCCceeeEEEEEeec
Q psy16863        425 ENAVGRSHCSCELSVLV  441 (1075)
Q Consensus       425 ~n~~g~~~~s~~l~V~~  441 (1075)
                      .|.+|.....+.+.+..
T Consensus       277 rcg~g~~~rdv~c~s~~  293 (560)
T KOG4597|consen  277 RCGAGFLRRDVPCSSVK  293 (560)
T ss_pred             ccccceeeccceeeeec
Confidence            99999988888777653

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=92.77  E-value=0.14  Score=51.13  Aligned_cols=48  Identities=17%  Similarity=0.269  Sum_probs=40.4

Q ss_pred             CcEEEEEEC-CEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCC
Q psy16863        378 EIKIHWYRN-DRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAV  428 (1075)
Q Consensus       378 ~~~v~W~k~-g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~  428 (1075)
                      +|.+.|.-+ |+.|..+..+.++..|.   |.+.+...+++|.|+|.++...
T Consensus        12 DP~y~W~GP~g~~l~gn~~~nIT~TG~---L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   12 DPTYLWTGPNGKPLSGNSYVNITETGK---LMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCceEEECCCCcccCCCCeEEEccCce---EEeeccccccCCceEEEEEEEe
Confidence            689999985 56777777888888886   8899999999999999987543

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA03286 envelope glycoprotein E; Provisional

Probab=92.73  E-value=2.5  Score=45.82  Aligned_cols=85  Identities=14%  Similarity=0.146  Sum_probs=51.7

Q ss_pred             eEEEEEcccccCCCeEEEEEEEcCCeeEEE-EEEEEEeecCC--Ccccc-------------eeecceeEEeeCCeEEEE
Q psy16863         93 RTELNIRRVRRDDGGRYSVTASNESGYSTA-KFELSVESQVP--DAPAF-------------IRRLHDIAVKVGTRARLL  156 (1075)
Q Consensus        93 ~~~L~I~~~~~~d~G~Y~c~a~n~~g~~~~-~~~l~V~~~~~--~~p~~-------------~~~~~~~~v~~G~~~~l~  156 (1075)
                      ...|+|.+++..++|.|+--..|..|.+.. .+-|+|....+  +++..             +.........+|+++.++
T Consensus       126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vS  205 (492)
T PHA03286        126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDAS  205 (492)
T ss_pred             CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEE
Confidence            457999999999999999999998887744 44556643311  11111             112334456678888776


Q ss_pred             EEecCCCeeEEEEccCCCeeEEEeeC
Q psy16863        157 VEIRSPTEIKCQFDLNNTIPFSFRAQ  182 (1075)
Q Consensus       157 c~~~~~~~~~c~~~~~~~~~~~W~~~  182 (1075)
                      ......     .+++.....+.|++-
T Consensus       206 v~l~~~-----~~d~~Fsl~i~W~y~  226 (492)
T PHA03286        206 VTAHLT-----NWAGAFSLEFRVLFL  226 (492)
T ss_pred             EEEeec-----ccCCCceEEEEEEEe
Confidence            655421     123334456666653

>PHA03042 CD47-like protein; Provisional

Probab=92.63  E-value=0.48  Score=47.64  Aligned_cols=73  Identities=15%  Similarity=0.292  Sum_probs=49.5

Q ss_pred             eecCCeEEEEEEEecC-----CCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEE
Q psy16863        760 ATVNEEFKFTVQVSIS-----PEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITS  834 (1075)
Q Consensus       760 ~~~g~~~~l~C~v~g~-----p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s  834 (1075)
                      ..-++++.+.|.++.-     ....+.|..+|+.+...++.       ...+|.+... ..=.|.|+|+|.+...+....
T Consensus        28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-------n~aSL~~~f~-~~l~GNYTCEv~~l~n~gk~~   99 (286)
T PHA03042         28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-------NTSSLKFNFS-KNLSGNYTCEAINKFNKIKNT   99 (286)
T ss_pred             EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-------cceEEEEecc-ccCCCceeEEEeecccCccEE
Confidence            3467899999999842     35579999999988654322       2346766543 334899999999876555555


Q ss_pred             EEEEEE
Q psy16863        835 CFLKLN  840 (1075)
Q Consensus       835 ~~l~V~  840 (1075)
                      ..|+-.
T Consensus       100 IeLk~~  105 (286)
T PHA03042        100 IELQYV  105 (286)
T ss_pred             EEEEEE
Confidence            555443

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=92.53  E-value=0.19  Score=50.29  Aligned_cols=48  Identities=21%  Similarity=0.441  Sum_probs=38.5

Q ss_pred             CeeEEEeeCCCceeccCcEEEEecCCeEEEEEceeccCCCeEEEEEEEcC
Q psy16863        174 TIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNE  223 (1075)
Q Consensus       174 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~  223 (1075)
                      .|.+.|...++.++.+....-+...|  .|.+.+.+.+++|.|+|..+-.
T Consensus        12 DP~y~W~GP~g~~l~gn~~~nIT~TG--~L~~~~F~esmSG~YTCtLsYk   59 (271)
T PF07354_consen   12 DPTYLWTGPNGKPLSGNSYVNITETG--KLMFKNFQESMSGSYTCTLSYK   59 (271)
T ss_pred             CCceEEECCCCcccCCCCeEEEccCc--eEEeeccccccCCceEEEEEEE
Confidence            47899999888888766554455555  5999999999999999998643

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=92.30  E-value=6.2  Score=38.93  Aligned_cols=102  Identities=14%  Similarity=0.264  Sum_probs=53.4

Q ss_pred             CcEEEEEECCEecCCCC---cEEEEEcCCE---EEEEEc-ccCCCCceeEEEEEEeCCCce-eeEEEEEeecCCCCCCCe
Q psy16863        378 EIKIHWYRNDRKLEENK---IYRTQHDGNF---YFIDLS-SVSLFDSGRWTCLAENAVGRS-HCSCELSVLVPKAYKAPF  449 (1075)
Q Consensus       378 ~~~v~W~k~g~~l~~~~---~~~~~~~g~~---~~L~I~-~v~~~d~G~Y~C~a~n~~g~~-~~s~~l~V~~~~~~~~p~  449 (1075)
                      ...++||.||.++....   ......+|..   ++|++. +...+..=..+|++.=..... ...... ...|..+.+|.
T Consensus         6 S~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a-~~~P~Vy~~P~   84 (211)
T PF02124_consen    6 SVRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNA-TATPSVYPKPR   84 (211)
T ss_pred             cEEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeec-ccccceecCCE
Confidence            45899999999887542   2334455633   355552 222333347899986433322 222211 12222233444


Q ss_pred             eeeecceEEecCCeEEEEEEEECCCC--CeEEEEeCCEec
Q psy16863        450 FTKELEAILTEQGTVSLECKVMGIPT--PQLIWYKDNKKI  487 (1075)
Q Consensus       450 ~~~~~~~~~~~g~~v~l~C~~~g~p~--~~v~W~~~g~~l  487 (1075)
                      +...    +.+|   ...|.+...|.  ..+.|+-++...
T Consensus        85 vsv~----F~~g---~AVC~A~CVP~~~v~l~W~v~d~~~  117 (211)
T PF02124_consen   85 VSVR----FEDG---YAVCTARCVPRGNVTLRWSVGDDPS  117 (211)
T ss_pred             EEEE----ecCC---EEEEEcceeeCCCeEEEEEECCccC
Confidence            4332    2223   33577665553  589999888763

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PHA03283 envelope glycoprotein E; Provisional

Probab=91.27  E-value=3.3  Score=46.05  Aligned_cols=85  Identities=21%  Similarity=0.300  Sum_probs=51.0

Q ss_pred             eEEEEEcccccCCCeEEEEEEEcCCeeEEEEEEEEEeec--CC--Cccc------------c-eeecceeEEeeCCeEEE
Q psy16863         93 RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ--VP--DAPA------------F-IRRLHDIAVKVGTRARL  155 (1075)
Q Consensus        93 ~~~L~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~--~~--~~p~------------~-~~~~~~~~v~~G~~~~l  155 (1075)
                      ...|+|.+++.+++|.|+--..|..+.....+.|+|...  .+  .||.            | +..-+.....+|+++.+
T Consensus       133 ~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~l  212 (542)
T PHA03283        133 RSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDL  212 (542)
T ss_pred             CCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeE
Confidence            457999999999999999999887774455555666541  11  1111            1 11223455678888887


Q ss_pred             EEEecCCCeeEEEEccCCCeeEEEeeC
Q psy16863        156 LVEIRSPTEIKCQFDLNNTIPFSFRAQ  182 (1075)
Q Consensus       156 ~c~~~~~~~~~c~~~~~~~~~~~W~~~  182 (1075)
                      ...+....     ++......+.|++-
T Consensus       213 si~l~s~~-----~d~~fs~~i~Wyy~  234 (542)
T PHA03283        213 SVHLESDI-----GDPSFSATIDWYYM  234 (542)
T ss_pred             eEEEeecc-----CCCCceEEEEEEEe
Confidence            66554221     01223455667653

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=90.44  E-value=1.6  Score=37.00  Aligned_cols=55  Identities=25%  Similarity=0.320  Sum_probs=38.5

Q ss_pred             eEEEEEEEEccCCCeeEEEECCEEcC-CCCeeEEEECCCCceeeEEEEEEEEeCCeeEEE
Q psy16863        863 AVNLECKVIGVPQPTLKWFKDGRELK-AGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSS  921 (1075)
Q Consensus       863 ~~~L~C~v~g~p~p~v~W~k~g~~l~-~~~~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~  921 (1075)
                      ...|.+++.+. .+.+.||.||..+. ....+.+......   .|.|+..+.+..|...+
T Consensus        31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~~~~~~~~~~---~G~h~l~vvD~~G~~~~   86 (89)
T PF06832_consen   31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQPGHQLFWQPDR---PGEHTLTVVDAQGRSAS   86 (89)
T ss_pred             cceEEEEEeCC-CCcEEEEECCEEcccCCCCCeEEeCCCC---CeeEEEEEEcCCCCEEE
Confidence            44555555555 45899999999993 3334455444422   79999999999998755

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>KOG1026|consensus

Probab=90.33  E-value=0.29  Score=57.52  Aligned_cols=156  Identities=19%  Similarity=0.192  Sum_probs=94.4

Q ss_pred             eeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEE
Q psy16863        758 CQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFL  837 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l  837 (1075)
                      ..+..|..+++.|...+.|.|.+.|+.++....+.......-.  ..+.+.+.         ++|.+.|..|....++.+
T Consensus       202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~--~~~~~~~~---------~~c~~E~~~~~~~~~v~~  270 (774)
T KOG1026|consen  202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCR--SECEVLEN---------DLCIAENAVARSNPSILL  270 (774)
T ss_pred             hhhcccchheeeeecccCCCcceeeecccccccCCCccccccc--ccceeeec---------hhhHHHHhhhhcCceeee
Confidence            3466788999999999999999999998766554332111111  11122222         999999999999888888


Q ss_pred             EEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCCeeEEEECCEEcCC-CCeeEEEE--------CCCCceeeEEE
Q psy16863        838 KLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKA-GDIHKIIS--------GEDGTCCLGIY  908 (1075)
Q Consensus       838 ~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~-~~~~~i~~--------~~~~~~d~G~Y  908 (1075)
                      .+..|.....+.-.      ... ...-+.-.+.+.|.+.-.|..+|..+.. |....-..        ......+.|.|
T Consensus       271 ~~~~p~~~~~~~~~------~~~-~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~~  343 (774)
T KOG1026|consen  271 VVDLPKAEVLLCSP------LSD-HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGNY  343 (774)
T ss_pred             EEecccccccCCCC------ccc-cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccCcc
Confidence            88776432221100      000 1111222233667777899888766532 11110000        01123457999


Q ss_pred             EEEEEeCCeeEEEEEEEEEecCC
Q psy16863        909 TCEAHNCMGTTSSSAALLGFEDK  931 (1075)
Q Consensus       909 ~C~a~N~~G~~~~~~~l~v~~~~  931 (1075)
                      +|.+.|..|.........+...|
T Consensus       344 ~~~~e~~~g~~~~r~~g~~~~~P  366 (774)
T KOG1026|consen  344 TLFPELPGGKNYCRNPGGFMSRP  366 (774)
T ss_pred             eeeecccCccccccCcCccccCC
Confidence            99999999988776666655544

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=89.07  E-value=0.94  Score=38.67  Aligned_cols=66  Identities=18%  Similarity=0.263  Sum_probs=40.6

Q ss_pred             eEEEEEEEecCCCCe--EEEEECCEEeec---CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEE
Q psy16863        765 EFKFTVQVSISPEPK--VSWFRDDQQVVE---SDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT  833 (1075)
Q Consensus       765 ~~~l~C~v~g~p~p~--v~W~k~g~~i~~---~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~  833 (1075)
                      ++.-.-.....+...  ++|..+..+...   +.++.+..+   ...|.|+.+++.|+|.|.-+++|..|....
T Consensus        29 sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~e---nlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~   99 (108)
T PF11465_consen   29 SVQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFTSE---NLALLIKAAQPQDSGLYCLEVTNESGKVCT   99 (108)
T ss_dssp             EEEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEETT---TTEEEESS-SGGG-EEEEEEEEETTSCEEE
T ss_pred             EEEEEEEcccCCceEEEEEEcCCCcccccccccceEeeecc---CceEEEeecCcccCceEEEEEEcCCCcEEE
Confidence            344444554455554  455443333332   234554432   347999999999999999999999998743

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PHA03283 envelope glycoprotein E; Provisional

Probab=89.05  E-value=9.6  Score=42.61  Aligned_cols=98  Identities=16%  Similarity=0.143  Sum_probs=56.4

Q ss_pred             CEEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeee-eeccceEeecCCeEE
Q psy16863        491 DIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFI-KEVENVKAKIGTSAI  569 (1075)
Q Consensus       491 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~G~~~~  569 (1075)
                      +...|.|.++..+++|.|+-...|..+.....+.|.|.++.........+...+.|..-...|. ..-.......|+++.
T Consensus       132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~  211 (542)
T PHA03283        132 ERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFD  211 (542)
T ss_pred             CCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCcee
Confidence            3457889999999999999999998875666666777653221110000001111111111222 223445567899988


Q ss_pred             EEEEEecCC----CCceEEEEeC
Q psy16863        570 LECQVLVPP----WPRSIYWYNK  588 (1075)
Q Consensus       570 L~C~~~~~p----~p~~v~W~~~  588 (1075)
                      +.-......    ...+|.||.-
T Consensus       212 lsi~l~s~~~d~~fs~~i~Wyy~  234 (542)
T PHA03283        212 LSVHLESDIGDPSFSATIDWYYM  234 (542)
T ss_pred             EeEEEeeccCCCCceEEEEEEEe
Confidence            877665332    3348999873

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=88.62  E-value=4.6  Score=34.18  Aligned_cols=74  Identities=12%  Similarity=0.159  Sum_probs=46.6

Q ss_pred             CCCeEEeccceeeeecC----CeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEE
Q psy16863        747 KAPKFIEGLKSCQATVN----EEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKC  822 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g----~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C  822 (1075)
                      .++.|+.+.....+...    +...|.+.+.+. .+.+.||.||+.+......         ..+.+.   +...|.|+.
T Consensus         9 ~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~---------~~~~~~---~~~~G~h~l   75 (89)
T PF06832_consen    9 SPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQPG---------HQLFWQ---PDRPGEHTL   75 (89)
T ss_pred             CCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCCCC---------CeEEeC---CCCCeeEEE
Confidence            46666665544333222    256667777766 5599999999999433211         123332   356799999


Q ss_pred             EEEeCCceEEE
Q psy16863        823 IATNDFGQSIT  833 (1075)
Q Consensus       823 ~A~N~~G~~~~  833 (1075)
                      .+.+..|....
T Consensus        76 ~vvD~~G~~~~   86 (89)
T PF06832_consen   76 TVVDAQGRSAS   86 (89)
T ss_pred             EEEcCCCCEEE
Confidence            99999888543

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=88.56  E-value=2  Score=45.62  Aligned_cols=21  Identities=19%  Similarity=0.515  Sum_probs=17.8

Q ss_pred             eEEEEEEEec-CC-CcEEEEEEC
Q psy16863        366 RARLLVEIRS-PT-EIKIHWYRN  386 (1075)
Q Consensus       366 ~v~l~C~~~g-~p-~~~v~W~k~  386 (1075)
                      .++|+|.+.| .| ...++|.||
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            5799999988 33 679999999

>PHA03282 envelope glycoprotein E; Provisional

Probab=88.15  E-value=5.9  Score=43.25  Aligned_cols=23  Identities=22%  Similarity=0.391  Sum_probs=20.3

Q ss_pred             eEEEEEceeccCCCeEEEEEEEc
Q psy16863        200 RTELNIRRVRRDDGGRYSVTASN  222 (1075)
Q Consensus       200 ~~~L~I~~~~~~D~G~Y~C~a~n  222 (1075)
                      ...|++.|+..+++|.|.|.+.-
T Consensus       332 ~VdL~F~nAp~saSGLYVfVl~y  354 (540)
T PHA03282        332 TVNLQLRDASEASGGLYVCVVYV  354 (540)
T ss_pred             ccceEecCCCcccCceEEEEEEE
Confidence            44799999999999999999853

>PHA03286 envelope glycoprotein E; Provisional

Probab=88.08  E-value=14  Score=40.50  Aligned_cols=37  Identities=11%  Similarity=0.075  Sum_probs=32.3

Q ss_pred             EEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEEe
Q psy16863        608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL  644 (1075)
Q Consensus       608 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~  644 (1075)
                      ..|+|.+++..++|.|+-...|..|....+...+.|.
T Consensus       127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~  163 (492)
T PHA03286        127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVS  163 (492)
T ss_pred             CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEe
Confidence            3799999999999999999999988887777777774

>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []

Probab=87.72  E-value=2  Score=34.22  Aligned_cols=61  Identities=20%  Similarity=0.237  Sum_probs=40.1

Q ss_pred             eeecCCeEEEEEEEecCCCCeEEEEECC-EEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEE
Q psy16863        759 QATVNEEFKFTVQVSISPEPKVSWFRDD-QQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSI  832 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p~p~v~W~k~g-~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~  832 (1075)
                      .+..|+.+.|...........+.|..++ .....+..+.......|.+.+++.             |.|..|...
T Consensus         7 ~~~~g~~v~f~~~~~~g~~~~y~W~fgd~~~~~~~~~~t~ty~~~G~y~V~lt-------------v~n~~g~~t   68 (69)
T PF00801_consen    7 YVPTGQPVTFTASSSDGSPVTYSWDFGDNGTVSTGSSVTHTYSSPGTYTVTLT-------------VTNGVGSAT   68 (69)
T ss_dssp             CEBTTSEEEEEETTTTSSECEEEEE-SSESEEECSSEEEEEESSSEEEEEEEE-------------EEETTSEEE
T ss_pred             EEcCCCEEEEEEEccCCCCeEEEEEECCCCccccCCCEEEEcCCCeEEEEEEE-------------EEECCCCcC
Confidence            4678999999998844445699999988 444444555555555555555444             788888754

Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.

>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT

Probab=87.19  E-value=0.68  Score=53.52  Aligned_cols=273  Identities=14%  Similarity=0.100  Sum_probs=20.6

Q ss_pred             eEEEEEceecc-CCCeEEEEEEE--c-CceeEEEEEEEeeeccCCCCCccccccccceeeccceeEEEEEecCCCceEEE
Q psy16863        200 RTELNIRRVRR-DDGGRYSVTAS--N-ESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQ  275 (1075)
Q Consensus       200 ~~~L~I~~~~~-~D~G~Y~C~a~--n-~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~  275 (1075)
                      ...|.|..-.. .-...|++.++  + ........+.|.|...  .....+..-....+..++.+.|....+..+..  .
T Consensus        37 ~~~l~ip~~~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V~~s--~l~~~I~gG~~~~~~~~~~i~ldgs~S~Dpd~--~  112 (440)
T PF02010_consen   37 TPQLTIPPYTLPPGDYTFTLTVTASSNPGLSSTDSVTVTVEPS--PLVAVIKGGSSRTVGYNSDITLDGSQSYDPDG--P  112 (440)
T ss_dssp             SSECEEECES--SCEEEEEEEEE--BCTTEEEEEEEEEEEE---------------------------------------
T ss_pred             ceEEEeCcccCCCCCEEEEEEEEEECCCCceEEEEEEEEEeec--cceeEEcCCccceeecCceEEEeeEEEecccc--c
Confidence            34688887665 22345577776  2 3333455666666531  11112222122223333445544322211100  0


Q ss_pred             EecCCCeeeEEecCCCcccc-C---CCeEEEeeCCeEEEEEcc--cCCCCCEEEEEEEEeCCe-eEEEEEEEEEecCCCC
Q psy16863        276 FDLNNTIPFSFRAQGDHPIF-G---NRFRAINRDGRTELNIRR--VRRDDGGRYSVTASNESG-YSTAKFELSVESQVPD  348 (1075)
Q Consensus       276 ~~~~~~~~~~w~~~~~~~~~-~---~~~~~~~~~~~~~L~I~~--~~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~~~~~~  348 (1075)
                       .+.....|.|......... -   .............|+|..  +.+...+.|+..+....+ ..+....+.+.  ...
T Consensus       113 -~~~~~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~--~~~  189 (440)
T PF02010_consen  113 -PGDSGLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTIPASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVV--SGD  189 (440)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -ccCCceEEEEEEeCCceeccccccccccccCCCCCEEEEEEhHHcCCCceEEEEEEEEeCCCCceeeEEEEEec--cCC
Confidence             0012456677654432220 0   000011112223566643  344444555666655443 23333344443  233


Q ss_pred             CCeeee-ecC--ceeeccCCeEEEEEEEecC----CCcEEEEEE--------CCEecCCCCcEEEEEcCCEEEEEEcccC
Q psy16863        349 APAFIR-RLH--DIAVKVGTRARLLVEIRSP----TEIKIHWYR--------NDRKLEENKIYRTQHDGNFYFIDLSSVS  413 (1075)
Q Consensus       349 ~p~~~~-~~~--~~~v~~G~~v~l~C~~~g~----p~~~v~W~k--------~g~~l~~~~~~~~~~~g~~~~L~I~~v~  413 (1075)
                      +|.+.. ...  ...+..++.+.|...+.+.    ....+.|..        ....+.... ......-....|.|..-.
T Consensus       190 ~p~v~I~~~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Lvi~~~~  268 (440)
T PF02010_consen  190 PPTVSISCVSNCKGKVNPSERLVLQASCSSCDSDSSNVSYSWSLFSLDGVSDSNSELPDWS-SMTTTGSSSSNLVIDPGV  268 (440)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCceeEccccccccccCCCCCEEEEEEEeCCCCcCCCEEEEEEEeeccccccccccccccc-cccccccccccccccccc
Confidence            444322 222  2238888888887776542    346889987        111111000 001111123356676655


Q ss_pred             CCCceeEEEE--EEeCCCce-eeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCC--CCeEEEEe
Q psy16863        414 LFDSGRWTCL--AENAVGRS-HCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIP--TPQLIWYK  482 (1075)
Q Consensus       414 ~~d~G~Y~C~--a~n~~g~~-~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p--~~~v~W~~  482 (1075)
                      ....+.|..+  +.+..+.. .++..+.+..+|..-  .+...+..-......++|.|.-....  +..|.|+.
T Consensus       269 l~~g~~Y~~~l~v~~~~~~~~~a~~~~~~n~pP~~g--~c~v~P~~G~al~T~Ft~~c~~~~d~~~pL~Y~f~~  340 (440)
T PF02010_consen  269 LEPGSTYTFRLTVTDSSGSSGSASISFTVNAPPSGG--SCSVSPSSGYALETTFTITCSGWTDDDQPLTYQFYY  340 (440)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccc
Confidence            6666677655  44443332 444555554444311  22222211123345688889754222  23666665

The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=87.07  E-value=5.5  Score=32.78  Aligned_cols=52  Identities=13%  Similarity=0.266  Sum_probs=32.5

Q ss_pred             CCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEE-EeCCceEEEEEEEEE
Q psy16863        777 EPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIA-TNDFGQSITSCFLKL  839 (1075)
Q Consensus       777 ~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A-~N~~G~~~~s~~l~V  839 (1075)
                      .+.+.|+-.+..+.....           .+........|+|.++|.| .|+.-...+...|.|
T Consensus        26 ~~~~~l~~~~~k~~~~~~-----------~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen   26 KPSLFLENPGKKSLETKK-----------LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             CEEEEEECSSCEEEEESS-----------EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             ChhheeeccCccccccce-----------EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            567777766654432221           3556677889999999999 565444444444433

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT

Probab=86.85  E-value=0.8  Score=52.95  Aligned_cols=259  Identities=13%  Similarity=0.127  Sum_probs=22.2

Q ss_pred             EEEEEcccCC-CCCEEEEEEEE--e-CCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecCC------
Q psy16863        308 TELNIRRVRR-DDGGRYSVTAS--N-ESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPT------  377 (1075)
Q Consensus       308 ~~L~I~~~~~-~d~G~Y~C~a~--n-~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p------  377 (1075)
                      ..|.|..-.. ...+.|.+.+.  + ........+.+.|... +..+. +.......+..++.+.|....+-.|      
T Consensus        38 ~~l~ip~~~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V~~s-~l~~~-I~gG~~~~~~~~~~i~ldgs~S~Dpd~~~~~  115 (440)
T PF02010_consen   38 PQLTIPPYTLPPGDYTFTLTVTASSNPGLSSTDSVTVTVEPS-PLVAV-IKGGSSRTVGYNSDITLDGSQSYDPDGPPGD  115 (440)
T ss_dssp             SECEEECES--SCEEEEEEEEE--BCTTEEEEEEEEEEEE----------------------------------------
T ss_pred             eEEEeCcccCCCCCEEEEEEEEEECCCCceEEEEEEEEEeec-cceeE-EcCCccceeecCceEEEeeEEEecccccccC
Confidence            4788887665 33467777777  3 2333566667777641 11222 2222333444456788877554333      


Q ss_pred             -CcEEEEEECCEecC-CC--C-cEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCce-eeEEEEEeecCCCCCCCeee
Q psy16863        378 -EIKIHWYRNDRKLE-EN--K-IYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS-HCSCELSVLVPKAYKAPFFT  451 (1075)
Q Consensus       378 -~~~v~W~k~g~~l~-~~--~-~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~-~~s~~l~V~~~~~~~~p~~~  451 (1075)
                       ...+.|.-....-. .-  . ............|.|..-...-.-.|...+.-..+.. ..+....|.+.... +|.+.
T Consensus       116 ~~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~-~p~v~  194 (440)
T PF02010_consen  116 SGLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTIPASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVVSGD-PPTVS  194 (440)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CceEEEEEEeCCceeccccccccccccCCCCCEEEEEEhHHcCCCceEEEEEEEEeCCCCceeeEEEEEeccCC-CCcee
Confidence             25788976543222 00  0 0001111122235554333322223666655433332 33344444433221 12211


Q ss_pred             -eecc---eEEecCCeEEEEEEEECC----CCCeEEEEe--------CCEecc--------CCCEEEEEeCCCCCCCcEE
Q psy16863        452 -KELE---AILTEQGTVSLECKVMGI----PTPQLIWYK--------DNKKIK--------AGDIFALTANPKDPSSLGT  507 (1075)
Q Consensus       452 -~~~~---~~~~~g~~v~l~C~~~g~----p~~~v~W~~--------~g~~l~--------~~~~~~l~i~~~~~~d~G~  507 (1075)
                       ....   ..+..++.+.|...+.+.    ....+.|..        ....+.        ......|.|..-.......
T Consensus       195 I~~~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lvi~~~~l~~g~~  274 (440)
T PF02010_consen  195 ISCVSNCKGKVNPSERLVLQASCSSCDSDSSNVSYSWSLFSLDGVSDSNSELPDWSSMTTTGSSSSNLVIDPGVLEPGST  274 (440)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EccccccccccCCCCCEEEEEEEeCCCCcCCCEEEEEEEeeccccccccccccccccccccccccccccccccccccccc
Confidence             1111   126677777776665542    234789987        111111        1112245555444444455


Q ss_pred             EE--EEEEecceee-EEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEec-CCCCceE
Q psy16863        508 YT--CEAVNCMGAA-FSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLV-PPWPRSI  583 (1075)
Q Consensus       508 Y~--C~a~n~~g~~-~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~-~p~p~~v  583 (1075)
                      |.  +.+.+..+.. .++..+.+..++                 ....+...|... ......++|.|.--. ...|..|
T Consensus       275 Y~~~l~v~~~~~~~~~a~~~~~~n~pP-----------------~~g~c~v~P~~G-~al~T~Ft~~c~~~~d~~~pL~Y  336 (440)
T PF02010_consen  275 YTFRLTVTDSSGSSGSASISFTVNAPP-----------------SGGSCSVSPSSG-YALETTFTITCSGWTDDDQPLTY  336 (440)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccc-----------------cccccccccccc-ccccccccccccccccccccccc
Confidence            64  4555554443 333444432110                 011222222222 344567899997642 2335678


Q ss_pred             EEEe
Q psy16863        584 YWYN  587 (1075)
Q Consensus       584 ~W~~  587 (1075)
                      .|+.
T Consensus       337 ~f~~  340 (440)
T PF02010_consen  337 QFYY  340 (440)
T ss_dssp             ----
T ss_pred             cccc
Confidence            8776

The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=86.43  E-value=30  Score=34.35  Aligned_cols=102  Identities=20%  Similarity=0.317  Sum_probs=54.8

Q ss_pred             CeEEEEECCEEeecCC---cEEEEEee--CcEEEEEE-ccccCCCCeEEEEEEEeCCceEEEEEEEEEEecCCCCCCeee
Q psy16863        778 PKVSWFRDDQQVVESD---NVKILKET--LGVCHLKI-HALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFL  851 (1075)
Q Consensus       778 p~v~W~k~g~~i~~~~---~~~~~~~~--~~~~~L~I-~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~  851 (1075)
                      ..++||.||.++....   ......++  ..++.|.+ -+...+-.=+.+|.+.=.-+....+.+.....|..+.+|.+.
T Consensus         7 ~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vs   86 (211)
T PF02124_consen    7 VRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVS   86 (211)
T ss_pred             EEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEE
Confidence            3789999999886332   11222221  01455666 333455567889998733333322222233345555566543


Q ss_pred             eecceeecCCCeEEEEEEEEccCC--CeeEEEECCEE
Q psy16863        852 EELKAVLSEGGAVNLECKVIGVPQ--PTLKWFKDGRE  886 (1075)
Q Consensus       852 ~~~~~~~~~g~~~~L~C~v~g~p~--p~v~W~k~g~~  886 (1075)
                      .    .+..|   ...|.+.-.|.  ..+.|+-++..
T Consensus        87 v----~F~~g---~AVC~A~CVP~~~v~l~W~v~d~~  116 (211)
T PF02124_consen   87 V----RFEDG---YAVCTARCVPRGNVTLRWSVGDDP  116 (211)
T ss_pred             E----EecCC---EEEEEcceeeCCCeEEEEEECCcc
Confidence            2    24344   34455554442  57999987765

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins

Probab=85.89  E-value=5.5  Score=32.69  Aligned_cols=63  Identities=16%  Similarity=0.176  Sum_probs=36.7

Q ss_pred             cCCeEEEEEEEec-CCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEE--EEEeCCceEEEEEEEE
Q psy16863        762 VNEEFKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKC--IATNDFGQSITSCFLK  838 (1075)
Q Consensus       762 ~g~~~~l~C~v~g-~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C--~A~N~~G~~~~s~~l~  838 (1075)
                      .+..+.|.+...+ .....+.|...+..............               ..|.|+.  .+.|..|.+.....+.
T Consensus        13 ~~~~v~f~~~~~~~~~~~~~~W~fgdg~~~~~~~~~~~y~---------------~~G~y~v~l~v~n~~g~~~~~~~i~   77 (79)
T smart00089       13 AGESVTFTATSSDDGSIVSYTWDFGDGTSSTGPTVTHTYT---------------KPGTYTVTLTVTNAVGSASATVTVV   77 (79)
T ss_pred             CCCEEEEEEECCCCCCeEEEEEEeCCCCccCCCCEEEEeC---------------CCcEEEEEEEEEcCCCcEEEEEEEE
Confidence            6788889988775 34568999775543322233333333               4455543  3778888655455444


Q ss_pred             E
Q psy16863        839 L  839 (1075)
Q Consensus       839 V  839 (1075)
                      |
T Consensus        78 v   78 (79)
T smart00089       78 V   78 (79)
T ss_pred             E
Confidence            3

Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=84.25  E-value=6  Score=32.56  Aligned_cols=38  Identities=24%  Similarity=0.365  Sum_probs=25.5

Q ss_pred             CcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEE
Q psy16863        378 EIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAE  425 (1075)
Q Consensus       378 ~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~  425 (1075)
                      .+.+.|+-.+..+.....          .+.....+..|+|.+.|.|+
T Consensus        26 ~~~~~l~~~~~k~~~~~~----------~~~~~~~~~~d~G~w~C~a~   63 (80)
T PF05790_consen   26 KPSLFLENPGKKSLETKK----------LVSTFTPTTEDSGTWVCTAS   63 (80)
T ss_dssp             CEEEEEECSSCEEEEESS----------EEEEESBTCGGSEEEEEEEE
T ss_pred             ChhheeeccCccccccce----------EEEEecCCCCCCEEEEEEEc
Confidence            568888877654432222          13445667899999999994

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA03281 envelope glycoprotein E; Provisional

Probab=83.64  E-value=13  Score=41.62  Aligned_cols=84  Identities=15%  Similarity=0.222  Sum_probs=50.1

Q ss_pred             EEEEEcccccCCCeEEEEEEEcCCeeEEE-EEEEEEeecC---CCcccceee----------cceeEEeeCCeEEEEEEe
Q psy16863         94 TELNIRRVRRDDGGRYSVTASNESGYSTA-KFELSVESQV---PDAPAFIRR----------LHDIAVKVGTRARLLVEI  159 (1075)
Q Consensus        94 ~~L~I~~~~~~d~G~Y~c~a~n~~g~~~~-~~~l~V~~~~---~~~p~~~~~----------~~~~~v~~G~~~~l~c~~  159 (1075)
                      ..|+|.+++..++|.|+--.....|.... .+-|+|..+.   .++|.+...          -.+....+|++..+.+.+
T Consensus       298 ~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~L  377 (642)
T PHA03281        298 GVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMHL  377 (642)
T ss_pred             CeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEEE
Confidence            37999999999999999877766665544 5556665422   112222221          223456688888877766


Q ss_pred             cCCCeeEEEEccCCCeeEEEeeC
Q psy16863        160 RSPTEIKCQFDLNNTIPFSFRAQ  182 (1075)
Q Consensus       160 ~~~~~~~c~~~~~~~~~~~W~~~  182 (1075)
                      ....     -++.....+.|++-
T Consensus       378 ~s~i-----hD~pFsleI~Wyy~  395 (642)
T PHA03281        378 QYKI-----HDAPFDLLLEWLYV  395 (642)
T ss_pred             eeec-----cCCCceeEEEEEEe
Confidence            5321     01223455666643

>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []

Probab=82.75  E-value=4.8  Score=32.02  Aligned_cols=52  Identities=13%  Similarity=0.244  Sum_probs=32.8

Q ss_pred             EeecCCeEEEEEEEecCCCCceEEEEeCC-eEEecCCcEEEEEcCCceEEEEEe
Q psy16863        561 KAKIGTSAILECQVLVPPWPRSIYWYNKE-GVVEASDKYHIMADGLGGYSIEIN  613 (1075)
Q Consensus       561 ~v~~G~~~~L~C~~~~~p~p~~v~W~~~~-~~i~~~~~~~~~~~~~~~~~L~i~  613 (1075)
                      .+..|+.++|.... ....+..+.|..++ .....+..........+.|.+++.
T Consensus         7 ~~~~g~~v~f~~~~-~~g~~~~y~W~fgd~~~~~~~~~~t~ty~~~G~y~V~lt   59 (69)
T PF00801_consen    7 YVPTGQPVTFTASS-SDGSPVTYSWDFGDNGTVSTGSSVTHTYSSPGTYTVTLT   59 (69)
T ss_dssp             CEBTTSEEEEEETT-TTSSECEEEEE-SSESEEECSSEEEEEESSSEEEEEEEE
T ss_pred             EEcCCCEEEEEEEc-cCCCCeEEEEEECCCCccccCCCEEEEcCCCeEEEEEEE
Confidence            35679999999888 33335689999998 555555555555555555554443

Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=82.64  E-value=1.2  Score=50.24  Aligned_cols=85  Identities=21%  Similarity=0.371  Sum_probs=13.7

Q ss_pred             EEEEEcccccCCCeEEEEEEEcCCeeEEE-EEEEEEeecCCC----ccc--c----------eeecceeEEeeCCeEEEE
Q psy16863         94 TELNIRRVRRDDGGRYSVTASNESGYSTA-KFELSVESQVPD----APA--F----------IRRLHDIAVKVGTRARLL  156 (1075)
Q Consensus        94 ~~L~I~~~~~~d~G~Y~c~a~n~~g~~~~-~~~l~V~~~~~~----~p~--~----------~~~~~~~~v~~G~~~~l~  156 (1075)
                      ..|.|.+++.+|+|.|+-...|..|.... .+.|.|....+.    +|.  +          +.........+|+++.+.
T Consensus        89 ~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~~  168 (439)
T PF02480_consen   89 GGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHLS  168 (439)
T ss_dssp             ---------------------------------------------------------SEEEEEE--SEEE--TT--EE--
T ss_pred             CceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEEe
Confidence            46999999999999999999887766533 345555543222    121  1          122334456678887776


Q ss_pred             EEecCCCeeEEEEc-cCCCeeEEEeeCC
Q psy16863        157 VEIRSPTEIKCQFD-LNNTIPFSFRAQG  183 (1075)
Q Consensus       157 c~~~~~~~~~c~~~-~~~~~~~~W~~~~  183 (1075)
                      ..+....     .+ ......+.|++-.
T Consensus       169 v~l~~~~-----~d~~~f~~~i~W~~~~  191 (439)
T PF02480_consen  169 VHLQSEA-----HDDPPFSLEIDWYYMP  191 (439)
T ss_dssp             -EEEEEE-----SSS--EEEEEEEEEE-
T ss_pred             EEEEecc-----CCCCCeeEEEEEEEec
Confidence            5543211     11 2234567787643

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>KOG1026|consensus

Probab=82.47  E-value=1.6  Score=51.73  Aligned_cols=154  Identities=20%  Similarity=0.149  Sum_probs=92.6

Q ss_pred             ceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEE
Q psy16863        358 DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCEL  437 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l  437 (1075)
                      ...+..|..+++.|...+.|.+.+.|+.++....+.......-. +.+ ..+.+        ++|.++|..|....+..+
T Consensus       201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~-~~~-~~~~~--------~~c~~E~~~~~~~~~v~~  270 (774)
T KOG1026|consen  201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCR-SEC-EVLEN--------DLCIAENAVARSNPSILL  270 (774)
T ss_pred             hhhhcccchheeeeecccCCCcceeeecccccccCCCccccccc-ccc-eeeec--------hhhHHHHhhhhcCceeee
Confidence            45677899999999999999999999998866554322111111 111 11111        899999999999888888


Q ss_pred             EeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccCCCEEE---------EEeCCCCCCCcEEE
Q psy16863        438 SVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFA---------LTANPKDPSSLGTY  508 (1075)
Q Consensus       438 ~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~~~~---------l~i~~~~~~d~G~Y  508 (1075)
                      .+..++....+.-..+      . ....+.--+.+.|.+...|..++.-+.......         +........+.|.|
T Consensus       271 ~~~~p~~~~~~~~~~~------~-~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~~  343 (774)
T KOG1026|consen  271 VVDLPKAEVLLCSPLS------D-HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGNY  343 (774)
T ss_pred             EEecccccccCCCCcc------c-cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccCcc
Confidence            8876643211110000      0 111111112356777888988877654221111         11222245678999


Q ss_pred             EEEEEecceeeEEEEEEEEe
Q psy16863        509 TCEAVNCMGAAFSTSRVIAR  528 (1075)
Q Consensus       509 ~C~a~n~~g~~~~~~~v~v~  528 (1075)
                      +|.+.|..|.+.......+.
T Consensus       344 ~~~~e~~~g~~~~r~~g~~~  363 (774)
T KOG1026|consen  344 TLFPELPGGKNYCRNPGGFM  363 (774)
T ss_pred             eeeecccCccccccCcCccc
Confidence            99999999887665544443

>PHA03282 envelope glycoprotein E; Provisional

Probab=82.35  E-value=35  Score=37.70  Aligned_cols=35  Identities=29%  Similarity=0.380  Sum_probs=25.0

Q ss_pred             EEEEcccCCCCCEEEEEEEEeCCee--EEEEEEEEEe
Q psy16863        309 ELNIRRVRRDDGGRYSVTASNESGY--STAKFELSVE  343 (1075)
Q Consensus       309 ~L~I~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l~V~  343 (1075)
                      +|.|.+++.+|+|.|+-.+......  +...+.|.|.
T Consensus       125 tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~  161 (540)
T PHA03282        125 TLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG  161 (540)
T ss_pred             eEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence            6999999999999999987543222  3444555554

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=82.05  E-value=7.6  Score=32.74  Aligned_cols=67  Identities=16%  Similarity=0.259  Sum_probs=44.8

Q ss_pred             cCceeeccCCeEEEEEEEec-----CCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEE
Q psy16863        356 LHDIAVKVGTRARLLVEIRS-----PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLA  424 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g-----~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a  424 (1075)
                      ++...+..|++++..|.+..     .....|.|..|+..+ +..++....++. +.+++.+.....+-.|.|..
T Consensus        10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~i-P~~qy~~in~~~-SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen   10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKI-PGSQYRVINDTV-SSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCES-TCGCEEEESTTE-EEEEESS--SSEEEEEEEEE
T ss_pred             cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEEC-ChhHcceeCCeE-EEEEEccCCCCCceEEEEEE
Confidence            34556789999999999843     245689999999955 455565555554 66788887766666777764

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=81.86  E-value=4.4  Score=34.15  Aligned_cols=71  Identities=14%  Similarity=0.319  Sum_probs=46.4

Q ss_pred             ccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCccccCCCeEEEeeCCeEEEEEcccCCCCCEEEEEEE
Q psy16863        250 HDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTA  327 (1075)
Q Consensus       250 ~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a  327 (1075)
                      +...+..|.++++.|.+...    |.- ......+.|+.++. .+++.+++...+. ...+++.+......-.|.|..
T Consensus        11 ~~pvv~lGS~vtasC~l~~~----c~~-~~~a~~I~Wkln~~-~iP~~qy~~in~~-~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen   11 PSPVVSLGSNVTASCVLKQN----CSH-SVNASQIVWKLNGE-KIPGSQYRVINDT-VSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             SSSEEETTS-EEEEEEE-CC----CHC-T-STTCEEEECSSC-ESTCGCEEEESTT-EEEEEESS--SSEEEEEEEEE
T ss_pred             CCCEEeCCCCEEEEEEEECC----CCC-CcccceEEEEECCE-ECChhHcceeCCe-EEEEEEccCCCCCceEEEEEE
Confidence            34457889999999998742    322 23455677877776 7888888877544 468888888777766777764

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins

Probab=81.69  E-value=10  Score=31.00  Aligned_cols=63  Identities=16%  Similarity=0.210  Sum_probs=38.4

Q ss_pred             CCCeEEEEEEEEc-cCCCeeEEEECCEEcCCCCeeEEEECCCCceeeEEEE--EEEEeCCeeEEEEEEEEE
Q psy16863        860 EGGAVNLECKVIG-VPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYT--CEAHNCMGTTSSSAALLG  927 (1075)
Q Consensus       860 ~g~~~~L~C~v~g-~p~p~v~W~k~g~~l~~~~~~~i~~~~~~~~d~G~Y~--C~a~N~~G~~~~~~~l~v  927 (1075)
                      .+..+.|.+...+ .....+.|...+.....+...... ...    .|.|+  ..|.|..|+.+....+.|
T Consensus        13 ~~~~v~f~~~~~~~~~~~~~~W~fgdg~~~~~~~~~~~-y~~----~G~y~v~l~v~n~~g~~~~~~~i~v   78 (79)
T smart00089       13 AGESVTFTATSSDDGSIVSYTWDFGDGTSSTGPTVTHT-YTK----PGTYTVTLTVTNAVGSASATVTVVV   78 (79)
T ss_pred             CCCEEEEEEECCCCCCeEEEEEEeCCCCccCCCCEEEE-eCC----CcEEEEEEEEEcCCCcEEEEEEEEE
Confidence            5778999988765 345678896533222222222222 222    69994  588999997666666554

Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1075
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		5e-37
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		4e-05
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		4e-24
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		2e-07
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		7e-24
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		1e-07
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		5e-20
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		2e-12
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		1e-18
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		1e-17
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		2e-15
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		3e-13
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		6e-06
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		4e-15
3kld_A	384	Ptprg Cntn4 Complex Length = 384		4e-12
3kld_A	384	Ptprg Cntn4 Complex Length = 384		7e-11
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		4e-12
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		7e-11
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		1e-10
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		5e-05
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		2e-10
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		4e-10
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		3e-09
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		8e-10
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		1e-09
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		5e-07
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		2e-09
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		7e-09
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		3e-08
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		8e-06
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		8e-09
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		3e-08
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		5e-08
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		3e-08
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		5e-08
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-08
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		8e-08
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		9e-07
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-08
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		3e-08
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		2e-07
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		1e-06
1evt_C	225	Crystal Structure Of Fgf1 In Complex With The Extra		4e-08
1evt_C	225	Crystal Structure Of Fgf1 In Complex With The Extra		8e-05
3ojv_C	226	Crystal Structure Of Fgf1 Complexed With The Ectodo		5e-08
3ojv_C	226	Crystal Structure Of Fgf1 Complexed With The Ectodo		5e-05
1cvs_C	225	Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L		5e-08
1cvs_C	225	Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L		5e-05
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-07
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-06
1fhg_A	154	High Resolution Refinement Of Telokin Length = 154		3e-07
3v6b_R	424	Vegfr-2VEGF-E Complex Structure Length = 424		3e-07
3v6b_R	424	Vegfr-2VEGF-E Complex Structure Length = 424		1e-04
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		3e-07
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		5e-04
1tlk_A	154	X-Ray Structure Determination Of Telokin, The C-Ter		3e-07
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-07
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-06
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		5e-07
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-06
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		5e-07
2j8h_A	197	Structure Of The Immunoglobulin Tandem Repeat A168-		5e-07
2j8h_A	197	Structure Of The Immunoglobulin Tandem Repeat A168-		8e-04
2ill_A	195	Anomalous Substructure Of Titin-A168169 Length = 19		6e-07
2ill_A	195	Anomalous Substructure Of Titin-A168169 Length = 19		7e-04
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		6e-07
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		7e-07
2lqr_A	108	Nmr Structure Of Ig3 Domain Of Palladin Length = 10		2e-06
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		3e-06
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		2e-05
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		3e-06
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		3e-05
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		6e-06
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		6e-06
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		8e-06
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		9e-06
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-05
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		1e-05
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		6e-04
3puc_A	99	Atomic Resolution Structure Of Titin Domain M7 Leng		1e-05
3puc_A	99	Atomic Resolution Structure Of Titin Domain M7 Leng		1e-04
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		1e-05
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		6e-04
2dm2_A	110	Solution Structure Of The First Ig Domain Of Human		2e-05
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		2e-05
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		6e-04
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		2e-05
2edl_A	110	Solution Structure Of The Ig-Like Domain (3801-3897		4e-05
1ry7_B	334	Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com		4e-05
1iil_E	220	Crystal Structure Of Pro253arg Apert Mutant Fgf Rec		5e-05
1iil_E	220	Crystal Structure Of Pro253arg Apert Mutant Fgf Rec		9e-04
2fdb_P	220	Crystal Structure Of Fibroblast Growth Factor (Fgf)		5e-05
2c5d_C	195	Structure Of A Minimal Gas6-Axl Complex Length = 19		5e-05
1ev2_E	220	Crystal Structure Of Fgf2 In Complex With The Extra		7e-05
2kdg_A	100	Solution Structure Of The 1st Ig Domain Of Myotilin		8e-05
1e0o_B	219	Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin C		8e-05
1ii4_E	220	Crystal Structure Of Ser252trp Apert Mutant Fgf Rec		1e-04
3grw_A	241	Fgfr3 In Complex With A Fab Length = 241		2e-04
1djs_A	216	Ligand-binding Portion Of Fibroblast Growth Factor		3e-04
3ojm_B	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		3e-04
3s97_C	201	Ptprz Cntn1 Complex Length = 201		4e-04
2y25_A	317	Crystal Structure Of The Myomesin Domains My11-My13		4e-04
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		6e-04
3kvq_A	108	Crystal Structure Of Vegfr2 Extracellular Domain D7		6e-04
3oj2_C	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		6e-04
1koa_A	491	Twitchin Kinase Fragment (C.Elegans), Autoregulated		7e-04
1rhf_A	182	Crystal Structure Of Human Tyro3-D1d2 Length = 182		8e-04

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score =  153 bits (386), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 158/619 (25%), Positives = 257/619 (41%), Gaps = 89/619 (14%)
Query: 348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
           + P FI  L  +   +G    L  ++    EI+I WY+   KL     Y+ Q   N   +
Sbjct: 4   EPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL 63
Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYK-APFFTKELEAILTEQG-TVS 465
            ++ V   D G +TC AEN+VG    S   +VLV K  K  P F ++L+ +    G  V+
Sbjct: 64  VINKVDHSDVGEYTCKAENSVGAVASS---AVLVIKERKLPPSFARKLKDVHETLGFPVA 120
Query: 466 LECKVMGIPTPQLIWYKDNKKIK---------AGDIFALTANPKDPSSLGTYTCEAVNCM 516
            EC++ G    Q+ WYKD + +K           ++  L     D S +G Y C A N +
Sbjct: 121 FECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPL 180
Query: 517 GAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLV 576
           G A S++++        L   +VP          P F  +  +V   +G S   +C V  
Sbjct: 181 GTASSSAKLT-------LSEHEVP----------PFFDLKPVSVDLALGESGTFKCHV-T 222
Query: 577 PPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQF 636
              P  I W      +     Y  M       ++ +  +   D G++ C A++ +G K  
Sbjct: 223 GTAPIKITWAKDNREIRPGGNYK-MTLVENTATLTVLKVTKGDAGQYTCYASNVAG-KDS 280
Query: 637 SAAYVHVLMPKNYRKPRFVESLKA--VMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPG 694
            +A + V  P     PRF++ L+   ++  D    +ECK+ G P   + W+KD  E++  
Sbjct: 281 CSAQLGVQEP-----PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQES 335
Query: 695 DVYQLTGTSSL-------------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLL 741
             ++++   S+             G Y C A N  G A SST L +++            
Sbjct: 336 SKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPP---------- 385
Query: 742 LLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKET 801
                K P  +E LK     +  E + T      P  +VSW +D +++      KI+ E 
Sbjct: 386 --VFRKKPHPVETLKGADVHLECELQGT------PPFQVSWHKDKRELRSGKKYKIMSEN 437
Query: 802 LGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLS-E 860
             +  + I  ++ AD  E++C A+ND G       + L  P     P+F+++L  + +  
Sbjct: 438 F-LTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAP-----PRFVKKLSDISTVV 491
Query: 861 GGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTC 910
           G  V L+  + G    ++ WFKD  E+     +  IS  +    L          G YTC
Sbjct: 492 GEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTC 551
Query: 911 EAHNCMGTTSSSAALLGFE 929
           +  N  GT    A L   E
Sbjct: 552 QIKNEAGTQECFATLSVLE 570

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 12/95 (12%)
Query: 848 PKFLEELKAVLSE-GGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHK----------II 896
           P F+E L+ V +  G  + L+CKV G P+  + W+K+  +L++   +K          +I
Sbjct: 6   PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVI 65
Query: 897 SGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDK 931
           +  D +  +G YTC+A N +G  +SSA L+  E K
Sbjct: 66  NKVDHSD-VGEYTCKAENSVGAVASSAVLVIKERK 99

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score =  110 bits (275), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 147/302 (48%), Gaps = 54/302 (17%)
Query: 652 PRFVESLKAVMTDDGLV---SFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL 705
           P F + LK V  D  L    +F+C V G     + W KDN E++PG  Y++T    T++L
Sbjct: 5   PPFFD-LKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 706 ----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL 755
                     G Y C A NV GK   S QL +++                   P+FI+ L
Sbjct: 64  TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE------------------PPRFIKKL 105
Query: 756 KSCQATVNEEF-KFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETLGVCHLKIHALE 813
           +  +    +E  ++  ++  SPE KV W++D+ ++ ES   ++   E++ V  L+++ L 
Sbjct: 106 EPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV--LEMYNLS 163
Query: 814 VADQAEWKCIATNDFGQSITSCFLKLNVPKHY-KKPKFLEELKAVLSEGGAVNLECKVIG 872
           V D  ++ C A N  G + +S  LK+  P  + KKP  +E LK     G  V+LEC++ G
Sbjct: 164 VEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLK-----GADVHLECELQG 218
Query: 873 VPQPTLKWFKDGRELKAGDIHKIISGEDGTCC---------LGIYTCEAHNCMGTTSSSA 923
            P   + W KD REL++G  +KI+S    T           +G Y C+A N +G+ +   
Sbjct: 219 TPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVG 278
Query: 924 AL 925
           ++
Sbjct: 279 SI 280

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 32/186 (17%)
Query: 748 APKFIEGLK--SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVK--ILKETLG 803
           AP F + LK  S    + E   F   V+ +   K++W +D++++    N K  +++ T  
Sbjct: 4   APPFFD-LKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 804 VCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKA--VLSEG 861
           +  LK+      D  ++ C A+N  G+   S  L +  P     P+F+++L+   ++ + 
Sbjct: 63  LTVLKVTK---GDAGQYTCYASNVAGKDSCSAQLGVQEP-----PRFIKKLEPSRIVKQD 114
Query: 862 GAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKI-------------ISGEDGTCCLGIY 908
                ECK+ G P+  + W+KD  E++     ++             +S ED     G Y
Sbjct: 115 EHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDS----GDY 170
Query: 909 TCEAHN 914
           TCEAHN
Sbjct: 171 TCEAHN 176

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score =  109 bits (273), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 146/302 (48%), Gaps = 54/302 (17%)
Query: 652 PRFVESLKAVMTDDGLV---SFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL 705
           P F + LK V  D  L    +F+C V G     + W KDN E++PG  Y++T    T++L
Sbjct: 5   PPFFD-LKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 706 ----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL 755
                     G Y C A NV GK   S QL ++                    P+FI+ L
Sbjct: 64  TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ------------------APPRFIKKL 105
Query: 756 KSCQATVNEEF-KFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETLGVCHLKIHALE 813
           +  +    +E  ++  ++  SPE KV W++D+ ++ ES   ++   E++ V  L+++ L 
Sbjct: 106 EPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV--LEMYNLS 163
Query: 814 VADQAEWKCIATNDFGQSITSCFLKLNVPKHY-KKPKFLEELKAVLSEGGAVNLECKVIG 872
           V D  ++ C A N  G + +S  LK+  P  + KKP  +E LK     G  V+LEC++ G
Sbjct: 164 VEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLK-----GADVHLECELQG 218
Query: 873 VPQPTLKWFKDGRELKAGDIHKIISGEDGTCC---------LGIYTCEAHNCMGTTSSSA 923
            P   + W KD REL++G  +KI+S    T           +G Y C+A N +G+ +   
Sbjct: 219 TPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVG 278
Query: 924 AL 925
           ++
Sbjct: 279 SI 280

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 32/186 (17%)
Query: 748 APKFIEGLK--SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVK--ILKETLG 803
           AP F + LK  S    + E   F   V+ +   K++W +D++++    N K  +++ T  
Sbjct: 4   APPFFD-LKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 804 VCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKA--VLSEG 861
           +  LK+      D  ++ C A+N  G+   S  L +  P     P+F+++L+   ++ + 
Sbjct: 63  LTVLKVTK---GDAGQYTCYASNVAGKDSCSAQLGVQAP-----PRFIKKLEPSRIVKQD 114
Query: 862 GAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKI-------------ISGEDGTCCLGIY 908
                ECK+ G P+  + W+KD  E++     ++             +S ED     G Y
Sbjct: 115 EHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDS----GDY 170
Query: 909 TCEAHN 914
           TCEAHN
Sbjct: 171 TCEAHN 176

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 144/336 (42%), Gaps = 53/336 (15%)
Query: 416 DSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIP 474
           D G + C A      S  S    V+V    +   F  + E+I    G TV L+C+V+G P
Sbjct: 93  DEGLYQCEASLGDSGSIISRTAKVMVAGPLR---FLSQTESITAFMGDTVLLKCEVIGDP 149
Query: 475 TPQLIWYKDNKKIKA--GDI-------FALTANPKDPSSLGTYTCEAVNCMGAAFSTSRV 525
            P + W K+ + +    GD         AL  +   P   G Y C A             
Sbjct: 150 MPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSA------------- 196
Query: 526 IARGQQSFLDNDDVPFNSLMPPG--PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSI 583
             R   S    ++     L  PG      F++   NV A  G  A+LEC V   P P S 
Sbjct: 197 --RNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYP-PPSF 253
Query: 584 YWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSA-AYVH 642
            W   E V++   K + +   LGG ++ I+ +   D G + CV T  +  +  SA A + 
Sbjct: 254 TWLRGEEVIQLRSKKYSL---LGGSNLLISNVTDDDSGTYTCVVTYKN--ENISASAELT 308
Query: 643 VLMPKNYRKPRFVESLKAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTG 701
           VL+P     P F+     +   + + + FEC V G P PT+ W K+ + + P D +Q+ G
Sbjct: 309 VLVP-----PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVG 363
Query: 702 TSSL----------GSYCCVAKNVMGKAESSTQLTI 727
            S+L          G Y CVA+N  G A+SS QL +
Sbjct: 364 GSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 135/329 (41%), Gaps = 44/329 (13%)
Query: 619 DDGEWKCVAT-SSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGF 677
           D+G ++C A+   SG      A V V  P  +      ES+ A M D   V  +C+V+G 
Sbjct: 93  DEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQ--TESITAFMGDT--VLLKCEVIGD 148
Query: 678 PTPTLQWFKDNEELKP--GD---VYQLTGTSSL--------GSYCCVAKNVMGKAESSTQ 724
           P PT+ W K+ ++L P  GD   V   +G   +        G Y C A+N      +ST+
Sbjct: 149 PMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARN-----PASTR 203
Query: 725 LTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFR 784
              E     LS+         ++   F++   +  A   ++      VS  P P  +W R
Sbjct: 204 TGNEAEVRILSDPGL------HRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLR 257
Query: 785 DDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKH 844
             ++V++  + K     LG  +L I  +   D   + C+ T        S  L + VP  
Sbjct: 258 G-EEVIQLRSKKY--SLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVP-- 312
Query: 845 YKKPKFLEELKAVLS-EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTC 903
              P FL     + + E   +  EC V G P PT+ W K+G  +   D  +I+ G +   
Sbjct: 313 ---PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRI 369
Query: 904 C------LGIYTCEAHNCMGTTSSSAALL 926
                   G Y C A N  G   SSA L+
Sbjct: 370 LGVVKSDEGFYQCVAENEAGNAQSSAQLI 398

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 124/551 (22%), Positives = 211/551 (38%), Gaps = 95/551 (17%)
Query: 416 DSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELE----AILTEQGTVSLECKVM 471
           DSG++ C+  N+VG       L+V  P + K    T+ ++    A+ T        C+  
Sbjct: 317 DSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFT--------CQYT 368
Query: 472 GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQ 531
           G P   + W KD K I   +      + K     G Y C   N   +A +++ +   G+ 
Sbjct: 369 GNPIKTVSWMKDGKAIGHSESVLRIESVKKEDK-GMYQCFVRNDRESAEASAELKLGGR- 426
Query: 532 SFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV 591
                    F+        P+  +  +    + G S  L+C     P P  I W      
Sbjct: 427 ---------FDP-------PVIRQAFQEETMEPGPSVFLKCVAGGNPTPE-ISWELDGKK 469
Query: 592 VEASDKY----HIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPK 647
           +  +D+Y    ++  +G     + I  + A D G +KC+A S  GV + SA      +P 
Sbjct: 470 IANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP- 528
Query: 648 NYRKPRFVESL--KAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL 705
                 ++  +  KA++  + L+   C V G+P  ++ W +DN  L      ++    +L
Sbjct: 529 ------YIRQMEKKAIVAGETLI-VTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTL 581
Query: 706 -----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEG 754
                       +Y CVAKN  G +               S E ++++L       F EG
Sbjct: 582 IIENVERNSDQATYTCVAKNQEGYSARG------------SLEVQVMVLPRIIPFAFEEG 629
Query: 755 LKSCQATVNEEFKFTVQVSISPEP-KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALE 813
                A V +       V     P  + W  D Q + E   +   +       L I A+E
Sbjct: 630 ----PAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVE 685
Query: 814 VADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGV 873
            +    + C A N  G    +  L + VP  +     LE      ++G    +ECK  G 
Sbjct: 686 ASHAGNFTCHARNLAGHQQFTTPLNVYVPPRW----ILEPTDKAFAQGSDAKVECKADGF 741
Query: 874 PQPTLKWFK-------DGRELKAGDIHKIISGEDGTCCL--------GIYTCEAHNCMGT 918
           P+P + W K       + ++LK  D  ++   E+GT  +        G Y CEA N +G+
Sbjct: 742 PKPQVTWKKAVGDTPGEYKDLKKSDNIRV---EEGTLHVDNIQKTNEGYYLCEAINGIGS 798
Query: 919 TSSSAALLGFE 929
             S+  ++  +
Sbjct: 799 GLSAVIMISVQ 809

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 98/194 (50%), Gaps = 15/194 (7%)
Query: 745 NNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETL-- 802
             +AP F + L+S          F   +S  P P+VSWFRD  QV+ +  +  ++ +   
Sbjct: 2   TTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDG-QVISTSTLPGVQISFSD 60
Query: 803 GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEG 861
           G   L I A+  A+   +   ATN  GQ+ ++   +L V      P F++ L+++ + +G
Sbjct: 61  GRAKLTIPAVTKANSGRYSLKATNGSGQATSTA--ELLVKAETAPPNFVQRLQSMTVRQG 118
Query: 862 GAVNLECKVIGVPQPTLKWFKDGRELKA---------GDIHKIISGEDGTCCLGIYTCEA 912
             V L+ +V G+P P +K+++DG E+++         GD++ ++  E      G Y+  A
Sbjct: 119 SQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNA 178
Query: 913 HNCMGTTSSSAALL 926
            N +G  +S+A LL
Sbjct: 179 TNSVGRATSTAELL 192

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 130/307 (42%), Gaps = 45/307 (14%)
Query: 448 PFFTKEL-EAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK------------AGDIFA 494
           P F KE  + I    G  S  C+  G P P++ W K  KK+             AG +  
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 495 LTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPF---NSLMPPGPAP 551
           +    + P     Y C A N +G       +    + + L  D +P    N  M P    
Sbjct: 67  IQPL-RTPRDENVYECVAQNSVG------EITVHAKLTVLREDQLPSGFPNIDMGPQ--- 116
Query: 552 IFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIE 611
             +K VE  +     +A + C     P P  I W+     V+ S     +     G +++
Sbjct: 117 --LKVVERTR-----TATMLCAASGNPDPE-ITWFKDFLPVDPSASNGRIKQLRSG-ALQ 167
Query: 612 INYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRF-VESLKAVMTDDGLVSF 670
           I   E  D G+++CVAT+S+GV+  S A ++V +      PRF +  +   +   G V+ 
Sbjct: 168 IESSEETDQGKYECVATNSAGVRYSSPANLYVRV--QNVAPRFSILPMSHEIMPGGNVNI 225
Query: 671 ECKVVGFPTPTLQWFKDNEELKPGD-------VYQLTGTSSLGSYCCVAKNVMGKAESST 723
            C  VG P P ++W +  E+L P D       V +LT      +Y CVA + +G  E+  
Sbjct: 226 TCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVA 285
Query: 724 QLTIEDI 730
           Q+T++ +
Sbjct: 286 QITVKSL 292

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 125/287 (43%), Gaps = 19/287 (6%)
Query: 652 PRFVESLK-AVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGSYCC 710
           PRF++  K  +    G+ SF C+  G P P + W K  +++       +    S G+   
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 711 VAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLK-SCQATVNEEFKFT 769
           +      + E+  +   ++    ++   KL +L  ++ P     +    Q  V E  +  
Sbjct: 67  IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTA 126
Query: 770 VQV---SISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
             +   S +P+P+++WF+D   V  S +   +K+ L    L+I + E  DQ +++C+ATN
Sbjct: 127 TMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ-LRSGALQIESSEETDQGKYECVATN 185
Query: 827 DFGQSITSCFLKLNVPKHYKKPKF-LEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGR 885
             G   +S    L V      P+F +  +   +  GG VN+ C  +G P P +KW +   
Sbjct: 186 SAGVRYSSP-ANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAE 244
Query: 886 ELKAGD-------IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
           +L   D       + ++   +D       YTC A + +G   + A +
Sbjct: 245 DLTPEDDMPVGRNVLELTDVKDSAN----YTCVAMSSLGVIEAVAQI 287

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 82/201 (40%), Gaps = 23/201 (11%)
Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETL 802
           T  + P+FI+  K           F  Q +  P+P+V+W +  ++V       I   E+ 
Sbjct: 2   TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
Query: 803 GVCHLKIHALEVA-DQAEWKCIATNDFGQSITSCFLKL----NVPKHYKKPKFLEELKAV 857
           G   L+I  L    D+  ++C+A N  G+      L +     +P  +       +LK V
Sbjct: 62  GAV-LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Query: 858 LSEGGAVNLECKVIGVPQPTLKWFKD----------GR--ELKAGDIHKIISGEDGTCCL 905
                A  L C   G P P + WFKD          GR  +L++G +  I S E+     
Sbjct: 121 ERTRTATML-CAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQ-IESSEETD--Q 176
Query: 906 GIYTCEAHNCMGTTSSSAALL 926
           G Y C A N  G   SS A L
Sbjct: 177 GKYECVATNSAGVRYSSPANL 197

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 55/191 (28%), Positives = 96/191 (50%), Gaps = 13/191 (6%)
Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETLGVC 805
           +AP F + L+S          F   +S  P P+VSWFRD Q +  S    + +  + G  
Sbjct: 4   QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 806 HLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAV 864
            L I A+  A+   +   ATN  GQ+ ++   +L V      P F++ L+++ + +G  V
Sbjct: 64  KLTIPAVTKANSGRYSLKATNGSGQATSTA--ELLVKAETAPPNFVQRLQSMTVRQGSQV 121
Query: 865 NLECKVIGVPQPTLKWFKDGRELKA---------GDIHKIISGEDGTCCLGIYTCEAHNC 915
            L+ +V G+P P +K+++DG E+++         GD++ ++  E      G Y+  A N 
Sbjct: 122 RLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNS 181
Query: 916 MGTTSSSAALL 926
           +G  +S+A LL
Sbjct: 182 VGRATSTAELL 192

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 92/430 (21%), Positives = 160/430 (37%), Gaps = 90/430 (20%)
Query: 447 APFFTKELEAIL----TEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIF--------A 494
            P F +E   ++    +E+  V L C+V G P P + W  +   +  G  F         
Sbjct: 5   GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 64
Query: 495 LTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFI 554
           L  NP      GTY C A N  G   S     A+ Q ++L+N    F +           
Sbjct: 65  LINNPNKTQDAGTYQCIATNSFGTIVSRE---AKLQFAYLEN----FKT----------- 106
Query: 555 KEVENVKAKIGTSAILECQVLVPPWPRS-----IYWYNKEGVVEASDKYHIMADGLGGYS 609
           +    V  + G   +L C    PP P S      + +N+    + + ++     G    +
Sbjct: 107 RTRSTVSVRRGQGMVLLCG---PP-PHSGELSYAWIFNEYPSYQDNRRFVSQETG----N 158
Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKN-----YRKPRFVESLKAVMTD 664
           + I  +E  D G + CV T++    +       +++  +     Y     V+  + V  +
Sbjct: 159 LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAE 218
Query: 665 DG-LVSFECKVVGFPTPTLQW--------------FKDNEELKPGDVYQLTGTSSLGSYC 709
            G  V  EC  +G P PT+ W               K N  L+  +  Q       GSY 
Sbjct: 219 KGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQ----EDAGSYE 274
Query: 710 CVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFT 769
           CVA+N  GK  +  QLT                      P +++ +      + E   + 
Sbjct: 275 CVAENSRGKNVAKGQLTFY------------------AQPNWVQIINDIHVAMEESVFWE 316
Query: 770 VQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFG 829
            + +  P+P   W ++   ++  D ++I + T     L I  + ++D   ++C+A N  G
Sbjct: 317 CKANGRPKPTYRWLKNGDPLLTRDRIQIEQGT-----LNITIVNLSDAGMYQCVAENKHG 371
Query: 830 QSITSCFLKL 839
              +S  L +
Sbjct: 372 VIFSSAELSV 381

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 97/412 (23%), Positives = 171/412 (41%), Gaps = 67/412 (16%)
Query: 547 PGPAPIFIKEVENVKAKIGT---SAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMAD 603
           PG  P+F++E  +V   + +      L C+V   P P   +  N   V    D  + + D
Sbjct: 2   PGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD 61
Query: 604 GLGGYSIEINYLEAVDD-GEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVM 662
           G    S+ IN      D G ++C+AT+S G      A +     +N++      S  +V 
Sbjct: 62  G----SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKT--RTRSTVSVR 115
Query: 663 TDDGLVSFECKVVGFPTP-----TLQW-------FKDNEEL---KPGDVY-QLTGTSSLG 706
              G+V     ++  P P     +  W       ++DN      + G++Y      S +G
Sbjct: 116 RGQGMV-----LLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVG 170
Query: 707 SYCCVAKNVMGKAESSTQLTIEDIRNH--LSEEDKLLLLTNNKAPKFIEGLKSCQATVNE 764
           +Y CV  N +   +     T   +RN   + E +  + +      +F E + + + T  +
Sbjct: 171 NYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEV------QFPETVPAEKGTTVK 224
Query: 765 EFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIA 824
              F +    +P P + W R D + +     +   ++ G+  L+I   +  D   ++C+A
Sbjct: 225 LECFALG---NPVPTILWRRADGKPIARKARR--HKSNGI--LEIPNFQQEDAGSYECVA 277
Query: 825 TNDFGQSITSCFLKLNVPKHYKKPKFLE---ELKAVLSEGGAVNLECKVIGVPQPTLKWF 881
            N  G+++    L       Y +P +++   ++   + E  +V  ECK  G P+PT +W 
Sbjct: 278 ENSRGKNVAKGQLTF-----YAQPNWVQIINDIHVAMEE--SVFWECKANGRPKPTYRWL 330
Query: 882 KDGRELKAGDIHKIISGEDGTCCL--------GIYTCEAHNCMGTTSSSAAL 925
           K+G  L   D  +I   E GT  +        G+Y C A N  G   SSA L
Sbjct: 331 KNGDPLLTRDRIQI---EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAEL 379

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 92/430 (21%), Positives = 160/430 (37%), Gaps = 90/430 (20%)
Query: 447 APFFTKELEAIL----TEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIF--------A 494
            P F +E   ++    +E+  V L C+V G P P + W  +   +  G  F         
Sbjct: 4   GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 63
Query: 495 LTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFI 554
           L  NP      GTY C A N  G   S     A+ Q ++L+N    F +           
Sbjct: 64  LINNPNKTQDAGTYQCIATNSFGTIVSRE---AKLQFAYLEN----FKT----------- 105
Query: 555 KEVENVKAKIGTSAILECQVLVPPWPRS-----IYWYNKEGVVEASDKYHIMADGLGGYS 609
           +    V  + G   +L C    PP P S      + +N+    + + ++     G    +
Sbjct: 106 RTRSTVSVRRGQGMVLLCG---PP-PHSGELSYAWIFNEYPSYQDNRRFVSQETG----N 157
Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKN-----YRKPRFVESLKAVMTD 664
           + I  +E  D G + CV T++    +       +++  +     Y     V+  + V  +
Sbjct: 158 LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAE 217
Query: 665 DG-LVSFECKVVGFPTPTLQW--------------FKDNEELKPGDVYQLTGTSSLGSYC 709
            G  V  EC  +G P PT+ W               K N  L+  +  Q       GSY 
Sbjct: 218 KGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQ----EDAGSYE 273
Query: 710 CVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFT 769
           CVA+N  GK  +  QLT                      P +++ +      + E   + 
Sbjct: 274 CVAENSRGKNVAKGQLTFY------------------AQPNWVQIINDIHVAMEESVFWE 315
Query: 770 VQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFG 829
            + +  P+P   W ++   ++  D ++I + T     L I  + ++D   ++C+A N  G
Sbjct: 316 CKANGRPKPTYRWLKNGDPLLTRDRIQIEQGT-----LNITIVNLSDAGMYQCVAENKHG 370
Query: 830 QSITSCFLKL 839
              +S  L +
Sbjct: 371 VIFSSAELSV 380

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 97/412 (23%), Positives = 171/412 (41%), Gaps = 67/412 (16%)
Query: 547 PGPAPIFIKEVENVKAKIGT---SAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMAD 603
           PG  P+F++E  +V   + +      L C+V   P P   +  N   V    D  + + D
Sbjct: 1   PGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD 60
Query: 604 GLGGYSIEINYLEAVDD-GEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVM 662
           G    S+ IN      D G ++C+AT+S G      A +     +N++      S  +V 
Sbjct: 61  G----SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKT--RTRSTVSVR 114
Query: 663 TDDGLVSFECKVVGFPTP-----TLQW-------FKDNEEL---KPGDVY-QLTGTSSLG 706
              G+V     ++  P P     +  W       ++DN      + G++Y      S +G
Sbjct: 115 RGQGMV-----LLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVG 169
Query: 707 SYCCVAKNVMGKAESSTQLTIEDIRNH--LSEEDKLLLLTNNKAPKFIEGLKSCQATVNE 764
           +Y CV  N +   +     T   +RN   + E +  + +      +F E + + + T  +
Sbjct: 170 NYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEV------QFPETVPAEKGTTVK 223
Query: 765 EFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIA 824
              F +    +P P + W R D + +     +   ++ G+  L+I   +  D   ++C+A
Sbjct: 224 LECFALG---NPVPTILWRRADGKPIARKARR--HKSNGI--LEIPNFQQEDAGSYECVA 276
Query: 825 TNDFGQSITSCFLKLNVPKHYKKPKFLE---ELKAVLSEGGAVNLECKVIGVPQPTLKWF 881
            N  G+++    L       Y +P +++   ++   + E  +V  ECK  G P+PT +W 
Sbjct: 277 ENSRGKNVAKGQLTF-----YAQPNWVQIINDIHVAMEE--SVFWECKANGRPKPTYRWL 329
Query: 882 KDGRELKAGDIHKIISGEDGTCCL--------GIYTCEAHNCMGTTSSSAAL 925
           K+G  L   D  +I   E GT  +        G+Y C A N  G   SSA L
Sbjct: 330 KNGDPLLTRDRIQI---EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAEL 378

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 119/297 (40%), Gaps = 41/297 (13%)
Query: 560 VKAKIGTSAILECQVLVPPWPRSIYWYNKEG-VVEASDKYHIMADGLGGYSIEINYLEAV 618
           V+  +G S    C  +  P   SI WYN +G  + ++ +  +  +G+    + I      
Sbjct: 14  VELSVGESKFFTCTAIGEP--ESIDWYNPQGEKIISTQRVVVQKEGVRS-RLTIYNANIE 70
Query: 619 DDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFP 678
           D G ++C AT + G  Q +   + +     +R+    +  K    +D  V   C+V   P
Sbjct: 71  DAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFK--QGEDAEVV--CRVSSSP 126
Query: 679 TPTLQWFKDNEELKP------------GDVYQLTGTSSLGSYCCVAKNVMGKAESSTQLT 726
            P + W   NEE+                       S  G Y C      G+ E+  ++ 
Sbjct: 127 APAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC-----EGRVEARGEID 181
Query: 727 IEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATV--NEEFKFTVQVSISPEPKVSWFR 784
             DI           ++  N  P      KS  AT    EE  F+ + S SPEP +SWFR
Sbjct: 182 FRDI-----------IVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR 230
Query: 785 DDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
           +  +++E +   ILK +     L +  +  +D   + C ATN  G+     FL++ V
Sbjct: 231 NG-KLIEENEKYILKGSN--TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 284

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 110/284 (38%), Gaps = 49/284 (17%)
Query: 670 FECKVVGFPTPTLQWFKDNEE----------LKPGDVYQLT----GTSSLGSYCCVAKNV 715
           F C  +G P  ++ W+    E           K G   +LT         G Y C A + 
Sbjct: 24  FTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA 82
Query: 716 MGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSIS 775
            G+ + +T   + +I   L+               F E +   +    E+ +   +VS S
Sbjct: 83  KGQTQEAT--VVLEIYQKLT---------------FREVVSPQEFKQGEDAEVVCRVSSS 125
Query: 776 PEPKVSWFRDDQQVVE-SDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSI-- 832
           P P VSW   +++V   SDN   +   L   +L+I  +  +D+  ++C    +    I  
Sbjct: 126 PAPAVSWLYHNEEVTTISDNRFAM---LANNNLQILNINKSDEGIYRCEGRVEARGEIDF 182
Query: 833 TSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDI 892
               + +NVP     P+  +   A    G  +   C+  G P+P + WF++G+ ++  + 
Sbjct: 183 RDIIVIVNVPPAISMPQ--KSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEK 240
Query: 893 HKIISGEDGTCCL--------GIYTCEAHNCMGTTSSSAALLGF 928
           + I+ G +    +        G Y C A N  G     A L  F
Sbjct: 241 Y-ILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 283

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 122/547 (22%), Positives = 211/547 (38%), Gaps = 92/547 (16%)
Query: 357 HDIAVKVGTRARLLVEIRSPTEIKI--HWYRNDRKLEENKI----YRTQHDGN----FYF 406
           H I + VG +  L    R+   + I  +W     K +  K+     +TQ           
Sbjct: 232 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 291
Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPF--FTKELEAIL--TEQG 462
           + +  V+  D G +TC A + +     S  + V     ++ PF  F   +E+++  T   
Sbjct: 292 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV-----HEKPFVAFGSGMESLVEATVGE 346
Query: 463 TVSLECKVMGIPTPQLIWYKD------NKKIKAGDIFALTANPKDPSSLGTYTCEAVNCM 516
            V +  K +G P P++ WYK+      N  IKAG +  LT         G YT    N  
Sbjct: 347 RVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHV--LTIMEVSERDTGNYTVILTN-- 402
Query: 517 GAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPA-PIFIKEVENVKAKIGTSAILECQVL 575
                    I++ +QS +    V     +PP       I  V++ +   GT+  L C V 
Sbjct: 403 --------PISKEKQSHV----VSLVVYVPPQIGEKSLISPVDSYQ--YGTTQTLTCTVY 448
Query: 576 VPPWPRSIYWY---NKEGVVEAS-----------DKYHIMADGLGGYSIEINYLE-AVDD 620
             P P  I+WY    +E   E S           +++  + D  GG  IE+N  + A+ +
Sbjct: 449 AIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIE 508
Query: 621 GEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVE---------SLKAVM--TDDGLVS 669
           G+ K V+T        SA Y    + K  R  R +          +L+  M  T+   VS
Sbjct: 509 GKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVS 568
Query: 670 FECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGSYCCVAKNVMGKAESSTQLTIED 729
             C         L W+K   +  P  V +L              N    + S+  + I +
Sbjct: 569 LWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIME 628
Query: 730 IRN-HLSEEDKLLLLTNNK------------------APKFIEGLKSCQATVNEEFKFTV 770
           ++N  L ++   + L  ++                  AP     L++   ++ E  + + 
Sbjct: 629 LKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSC 688
Query: 771 QVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQ 830
             S +P P++ WF+D++ +VE   + +LK+  G  +L I  +   D+  + C A +  G 
Sbjct: 689 TASGNPPPQIMWFKDNETLVEDSGI-VLKD--GNRNLTIRRVRKEDEGLYTCQACSVLGC 745
Query: 831 SITSCFL 837
           +    F 
Sbjct: 746 AKVEAFF 752

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 92/427 (21%), Positives = 154/427 (36%), Gaps = 85/427 (19%)
Query: 449 FFTKELEAILTEQGT---VSLECKVMGIPTPQLIWYKDNKKIK----------AGDIFAL 495
           F  + L  +  E+ T   V L C+    P     W  +  ++K           G++  +
Sbjct: 6   FEDQPLSVLFPEESTEEQVLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVIM 65
Query: 496 TANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIK 555
             NP      G Y C A N +G   S   ++  G   FL                  F K
Sbjct: 66  --NPTKAQDAGVYQCLASNPVGTVVSREAILRFG---FLQE----------------FSK 104
Query: 556 EVEN-VKAKIGTSAILECQVLVPP--WPRSIY-W-YNKEGVVEASDKYHIMADGLGGYSI 610
           E  + VKA  G   +L C    PP  +P   Y W  N+      +D  H ++   G  ++
Sbjct: 105 EERDPVKAHEGWGVMLPCN---PPAHYPGLSYRWLLNEFPNFIPTDGRHFVSQTTG--NL 159
Query: 611 EINYLEAVDDGEWKCVATSS---------SGVKQFSAAYVHVLMPKNYRKPRFVESLKAV 661
            I    A D G + C+ATS          S   Q + A     +     K RF     A+
Sbjct: 160 YIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDTRLFAPSIKARFPAETYAL 219
Query: 662 MTDDGLVSFECKVVGFPTPTLQWFKDNEELKPG-----DVYQLTGTS--SLGSYCCVAKN 714
           +     V+ EC   G P P ++W K +  L P         Q+   S    G+Y C A+N
Sbjct: 220 VGQQ--VTLECFAFGNPVPRIKWRKVDGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAEN 277
Query: 715 VMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSI 774
             G+     ++ ++                    P++++ +   +A +    ++    + 
Sbjct: 278 SKGRDTVQGRIIVQ------------------AQPEWLKVISDTEADIGSNLRWGCAAAG 319
Query: 775 SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITS 834
            P P V W R+ + +   + V++L        L+   L + D   ++C+A N  G    S
Sbjct: 320 KPRPTVRWLRNGEPLASQNRVEVL-----AGDLRFSKLSLEDSGMYQCVAENKHGTIYAS 374
Query: 835 CFLKLNV 841
             L +  
Sbjct: 375 AELAVQA 381

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 157/382 (41%), Gaps = 54/382 (14%)
Query: 569 ILECQVLVPPWPRSIYWY--NKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCV 626
           +L C+    P P +  W     E  +E   ++ +    +GG  + +N  +A D G ++C+
Sbjct: 25  LLACRARASP-PATYRWKMNGTEMKLEPGSRHQL----VGGNLVIMNPTKAQDAGVYQCL 79
Query: 627 ATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGL-VSFECKVVG-FPTPTLQW 684
           A++  G      A +     + + K    E    V   +G  V   C     +P  + +W
Sbjct: 80  ASNPVGTVVSREAILRFGFLQEFSK----EERDPVKAHEGWGVMLPCNPPAHYPGLSYRW 135
Query: 685 FKDN-EELKPGD----VYQLTG--------TSSLGSYCCVAKNVMGKAESSTQLTIEDIR 731
             +      P D    V Q TG         S LG+Y C+A + M  +  S       + 
Sbjct: 136 LLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQL- 194
Query: 732 NHLSEEDKLLLLTNNKA--PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQV 789
            +L+ ED  L   + KA  P     L   Q T+ E F F      +P P++ W + D  +
Sbjct: 195 -NLAAEDTRLFAPSIKARFPAETYALVGQQVTL-ECFAFG-----NPVPRIKWRKVDGSL 247
Query: 790 VESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPK 849
                    + T     L+I ++   D+  ++C A N  G+      + +       +P+
Sbjct: 248 SP-------QWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQA-----QPE 295
Query: 850 FLEELKAVLSE-GGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL--- 905
           +L+ +    ++ G  +   C   G P+PT++W ++G  L + +  ++++G+     L   
Sbjct: 296 WLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLAGDLRFSKLSLE 355
Query: 906 --GIYTCEAHNCMGTTSSSAAL 925
             G+Y C A N  GT  +SA L
Sbjct: 356 DSGMYQCVAENKHGTIYASAEL 377

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 86/199 (43%), Gaps = 31/199 (15%)
Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH 806
           KAP     L++  A V E   F   V   P+P++SW R+   +   D    ++E   +  
Sbjct: 6   KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQL-- 63
Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSC-FLKLNV-PKHYKKP---KFLEELKAVLSEG 861
           L I ++E +D   + C A N  G ++ SC  L++ + PK  + P   K +E LKAVL   
Sbjct: 64  LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLP-- 121
Query: 862 GAVNLECKVIGVPQPTLKWFKDGRELKAGD-----------IHKIISGEDGTCCLGIYTC 910
                 C  +G P+P++ W K    L+              IH  +  ED     G Y C
Sbjct: 122 ------CTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHN-VQKEDA----GQYRC 170
Query: 911 EAHNCMGTTSSSAALLGFE 929
            A N +GT  S    L  E
Sbjct: 171 VAKNSLGTAYSKLVKLEVE 189

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 91/427 (21%), Positives = 158/427 (37%), Gaps = 80/427 (18%)
Query: 447 APFFTKELEAILTEQGT----VSLECKVMGIPTPQLIWYKDNKKIK----------AGDI 492
            P F ++    L  +G+    V+L C+    P     W  +  ++K          AGD+
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63
Query: 493 FALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPI 552
             + +NP      G+Y C A N  G   S    +  G   FL      F++         
Sbjct: 64  --VISNPVKAKDAGSYQCVATNARGTVVSREASLRFG---FLQE----FSA--------- 105
Query: 553 FIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY--NKEGVVEASDKYHIMADGLGGYSI 610
             +E + VK   G   +  C    P +P   Y +  N+      +D    ++   G  ++
Sbjct: 106 --EERDPVKITEGWGVMFTCSP-PPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG--NL 160
Query: 611 EINYLEAVDDGEWKCVATSSSGV---KQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG- 666
            I   EA D G + C ATS         FS      L  ++ R+  +  S+KA    D  
Sbjct: 161 YIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQ--YAPSIKAKFPADTY 218
Query: 667 -----LVSFECKVVGFPTPTLQWFK-DNEEL------KPGDVYQLTGTSSLGSYCCVAKN 714
                +V+ EC   G P P ++W K D  +       +P    Q       G+Y C A+N
Sbjct: 219 ALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAEN 278
Query: 715 VMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSI 774
           + G+     ++ I                  +  P +++ +   +A +  + +++   S 
Sbjct: 279 IKGRDTYQGRIII------------------HAQPDWLDVITDTEADIGSDLRWSCVASG 320
Query: 775 SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITS 834
            P P V W RD Q +   + +++         L+   L + D   ++C+A N  G    S
Sbjct: 321 KPRPAVRWLRDGQPLASQNRIEV-----SGGELRFSKLVLEDSGMYQCVAENKHGTVYAS 375
Query: 835 CFLKLNV 841
             L +  
Sbjct: 376 AELTVQA 382

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 141/359 (39%), Gaps = 65/359 (18%)
Query: 597 KYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVE 656
           +Y ++A  L    +  N ++A D G ++CVAT++ G      A +     + +      E
Sbjct: 55  RYRLVAGDL----VISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFS----AE 106
Query: 657 SLKAVMTDDGL-VSFECKVV-GFPTPTLQWFKDN-EELKPGD----VYQLTG-------- 701
               V   +G  V F C     +P  + +W  +      P D    V Q TG        
Sbjct: 107 ERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTE 166
Query: 702 TSSLGSYCCVA--------KNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIE 753
            S LG+Y C A        K+V  K  S   L  ED R +             K P    
Sbjct: 167 ASDLGNYSCFATSHIDFITKSVFSKF-SQLSLAAEDARQYAPS-------IKAKFPADTY 218
Query: 754 GLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILK-ETLGVCHLKIHAL 812
            L     T+ E F F      +P P++ W + D     S   K L  E L    L I  +
Sbjct: 219 ALTGQMVTL-ECFAFG-----NPVPQIKWRKLDG----SQTSKWLSSEPL----LHIQNV 264
Query: 813 EVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSE-GGAVNLECKVI 871
           +  D+  ++C A N  G+      + ++      +P +L+ +    ++ G  +   C   
Sbjct: 265 DFEDEGTYECEAENIKGRDTYQGRIIIHA-----QPDWLDVITDTEADIGSDLRWSCVAS 319
Query: 872 GVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL-----GIYTCEAHNCMGTTSSSAAL 925
           G P+P ++W +DG+ L + +  ++  GE     L     G+Y C A N  GT  +SA L
Sbjct: 320 GKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAEL 378

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 82/190 (43%), Gaps = 30/190 (15%)
Query: 756 KSCQATV--NEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALE 813
           KS  AT    EE  F+ + S SPEP +SWFR+  +++E +   ILK +     L +  + 
Sbjct: 10  KSFNATAERGEEMTFSCRASGSPEPAISWFRNG-KLIEENEKYILKGS--NTELTVRNII 66
Query: 814 VADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGV 873
            +D   + C ATN  G+     FL++ V     +P  ++       E G V L C   G 
Sbjct: 67  NSDGGPYVCRATNKAGEDEKQAFLQVFV-----QPHIIQLKNETTYENGQVTLVCDAEGE 121
Query: 874 PQPTLKW--------FKDGRELKAGDIHKIISGEDGTCCL----------GIYTCEAHNC 915
           P P + W        F +G +   G I   + G+ G+  L          G Y CEA + 
Sbjct: 122 PIPEITWKRAVDGFTFTEGDKSLDGRIE--VKGQHGSSSLHIKDVKLSDSGRYDCEAASR 179
Query: 916 MGTTSSSAAL 925
           +G    S  L
Sbjct: 180 IGGHQKSMYL 189

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 1/141 (0%)
Query: 348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
           +AP   + + D+  K+G  A+L  +I       I WYR  ++L +++ Y+   DG  + +
Sbjct: 6   EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTL 65
Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLE 467
            + +    D G +TC+A N VG    S +L +     +   +  KE +       T+ L 
Sbjct: 66  TVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKE-KYYGAVGSTLRLH 124
Query: 468 CKVMGIPTPQLIWYKDNKKIK 488
              +G P P + W+   K ++
Sbjct: 125 VMYIGRPVPAMTWFHGQKLLQ 145

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 78/188 (41%), Gaps = 14/188 (7%)
Query: 745 NNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGV 804
           + +AP   + +K     + E  + + Q+   P P + W+R  +++++S   K+  +  G 
Sbjct: 4   SGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSD--GR 61
Query: 805 CH-LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGA 863
            H L +   E  D+  + CIATN+ G+  TS  L L     +  P +  + K   + G  
Sbjct: 62  THTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQF-HPGYPLKEKYYGAVGST 120
Query: 864 VNLECKVIGVPQPTLKWFKDGRELKAGD----------IHKIISGEDGTCCLGIYTCEAH 913
           + L    IG P P + WF   + L+  +           H ++         G Y  +  
Sbjct: 121 LRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLS 180
Query: 914 NCMGTTSS 921
           N  GT  +
Sbjct: 181 NVFGTVDA 188

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 10/89 (11%)
Query: 848 PKFLEELKAVLSE-GGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIIS-GEDGTCCL 905
           P   +E+K V ++ G A  L C+++G P P +KW++ G+EL     +K+ S G   T  +
Sbjct: 8   PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTV 67
Query: 906 --------GIYTCEAHNCMGTTSSSAALL 926
                   G+YTC A N +G   +S+ LL
Sbjct: 68  MTEEQEDEGVYTCIATNEVGEVETSSKLL 96

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 23/177 (12%)
Query: 768 FTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH-LKIHALEVA-DQAEWKCIAT 825
           F  Q +  P+P+++W +  ++V  S   ++++   G    L+I  L V  D+A ++C AT
Sbjct: 27  FVCQATGEPKPRITWMKKGKKV-SSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTAT 85
Query: 826 NDFGQSITSCFLKL----NVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWF 881
           N  G+  TS  L +     +P  +       +LK V+ +G    + C   G P P + WF
Sbjct: 86  NSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLK-VVEKGRTATMLCAAGGNPDPEISWF 144
Query: 882 KD----------GR--ELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALL 926
           KD          GR  +L++G +  I S E+     G Y C A N  GT  S+ A L
Sbjct: 145 KDFLPVDPAASNGRIKQLRSGALQ-IESSEESD--QGKYECVATNSAGTRYSAPANL 198

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 27/196 (13%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN--KIYRTQ-HDGN-F 404
           +P  I    D+ VK    A L  ++    E  I W+++   +  N  K +R Q  DG  F
Sbjct: 9   SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68
Query: 405 YFIDLSSVSLFDSGRWTCLAENAVGRS---HCSCELSVLVPKAYKAPFFTKELEAILTEQ 461
           ++  +      D G + C+A+N VG++   H S +++VL     +  F  +  +  + + 
Sbjct: 69  FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVL-----RDDFRVEPKDTRVAKG 123
Query: 462 GTVSLEC-KVMGIPTPQLIWYKD--------------NKKIKAGDIFALTANPKDPSSLG 506
            T  LEC    GIP P LIW KD              + +++  D   L  +  +P   G
Sbjct: 124 ETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183
Query: 507 TYTCEAVNCMGAAFST 522
            Y C A N +G   S+
Sbjct: 184 NYKCIAQNLVGTRESS 199

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 24/205 (11%)
Query: 742 LLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVV----ESDNVKI 797
           L    ++P+ IE         NE      +V   PEP + WF+D + V     +S  V+ 
Sbjct: 3   LAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQ- 61
Query: 798 LKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT-SCFLKLNVPKHYKKPKFLEELKA 856
            K+     +  +   +  D  E+ C+A N  GQ+++    L++ V +   +   +E    
Sbjct: 62  FKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFR---VEPKDT 118
Query: 857 VLSEGGAVNLEC-KVIGVPQPTLKWFKDG---RELKA---GDIHKIISGEDGTCCL---- 905
            +++G    LEC    G+P+PTL W KDG    +LKA   G   ++   + G   +    
Sbjct: 119 RVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVE 178
Query: 906 ----GIYTCEAHNCMGTTSSSAALL 926
               G Y C A N +GT  SS A L
Sbjct: 179 PIDEGNYKCIAQNLVGTRESSYAKL 203

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 27/196 (13%)
Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN--KIYRTQ-HDGN-F 404
           +P  I    D+ VK    A L  ++    E  I W+++   +  N  K +R Q  DG  F
Sbjct: 9   SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68
Query: 405 YFIDLSSVSLFDSGRWTCLAENAVGRS---HCSCELSVLVPKAYKAPFFTKELEAILTEQ 461
           ++  +      D G + C+A+N VG++   H S +++VL     +  F  +  +  + + 
Sbjct: 69  FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVL-----RDDFRVEPKDTRVAKG 123
Query: 462 GTVSLEC-KVMGIPTPQLIWYKD--------------NKKIKAGDIFALTANPKDPSSLG 506
            T  LEC    GIP P LIW KD              + +++  D   L  +  +P   G
Sbjct: 124 ETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183
Query: 507 TYTCEAVNCMGAAFST 522
            Y C A N +G   S+
Sbjct: 184 NYKCIAQNLVGTRESS 199

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 24/205 (11%)
Query: 742 LLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVV----ESDNVKI 797
           L    ++P+ IE         NE      +V   PEP + WF+D + V     +S  V+ 
Sbjct: 3   LAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQ- 61
Query: 798 LKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT-SCFLKLNVPKHYKKPKFLEELKA 856
            K+     +  +   +  D  E+ C+A N  GQ+++    L++ V +   +   +E    
Sbjct: 62  FKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFR---VEPKDT 118
Query: 857 VLSEGGAVNLEC-KVIGVPQPTLKWFKDG---RELKA---GDIHKIISGEDGTCCL---- 905
            +++G    LEC    G+P+PTL W KDG    +LKA   G   ++   + G   +    
Sbjct: 119 RVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVE 178
Query: 906 ----GIYTCEAHNCMGTTSSSAALL 926
               G Y C A N +GT  SS A L
Sbjct: 179 PIDEGNYKCIAQNLVGTRESSYAKL 203

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 79/189 (41%), Gaps = 17/189 (8%)
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRT--QHDGNFYFI 407
           P  IR+  +  V+VG  A      R      I W +N +K+   +   T  +  G    +
Sbjct: 7   PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 66
Query: 408 DLSSV-SLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAP----FFTKELEAILTEQG 462
            +  V +  D   + C+AEN VG +  S + ++ + +  K P      T+     + E G
Sbjct: 67  RIEPVRAGRDDAPYECVAENGVGDA-VSADATLTIYEGDKTPAGFPVITQGPGTRVIEVG 125
Query: 463 -TVSLECKVMGIPTPQLIWYKDNKKIKAG-------DIFALTANPKDPSSLGTYTCEAVN 514
            TV + CK +G PTP + W K+  K+          D F    N ++    G Y C A N
Sbjct: 126 HTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSRE-EDQGKYECVAEN 184
Query: 515 CMGAAFSTS 523
            MG   S +
Sbjct: 185 SMGTEHSKA 193

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 81/195 (41%), Gaps = 31/195 (15%)
Query: 462 GTVSLECKVMGIPTPQLIWYKDNKKI-----------KAGDIFALTANP-KDPSSLGTYT 509
           G  S  C   G P P ++W K+ KK+           + G I  L   P +       Y 
Sbjct: 22  GVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYE 81
Query: 510 CEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFN-SLMPPGPAPIFIKEVENVKAKIGTSA 568
           C A N +G A S    +     +  + D  P    ++  GP    I+        +G + 
Sbjct: 82  CVAENGVGDAVSADATL-----TIYEGDKTPAGFPVITQGPGTRVIE--------VGHTV 128
Query: 569 ILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVAT 628
           ++ C+ +  P P +IYW   +  V+ S+  + + DG     ++I      D G+++CVA 
Sbjct: 129 LMTCKAIGNPTP-NIYWIKNQTKVDMSNPRYSLKDGF----LQIENSREEDQGKYECVAE 183
Query: 629 SSSGVKQFSAAYVHV 643
           +S G +   A  ++V
Sbjct: 184 NSMGTEHSKATNLYV 198

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 81/198 (40%), Gaps = 18/198 (9%)
Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDN-VKILKETL 802
           T    P+ I   ++    V     F       P P + W ++ ++V  + +   +L++  
Sbjct: 2   TGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG 61
Query: 803 GVCHLKIHALEVA-DQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKA----- 856
           G+  L+I  +    D A ++C+A N  G ++ S    L + +  K P     +       
Sbjct: 62  GISILRIEPVRAGRDDAPYECVAENGVGDAV-SADATLTIYEGDKTPAGFPVITQGPGTR 120
Query: 857 VLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL--------GIY 908
           V+  G  V + CK IG P P + W K+  + K    +   S +DG   +        G Y
Sbjct: 121 VIEVGHTVLMTCKAIGNPTPNIYWIKN--QTKVDMSNPRYSLKDGFLQIENSREEDQGKY 178
Query: 909 TCEAHNCMGTTSSSAALL 926
            C A N MGT  S A  L
Sbjct: 179 ECVAENSMGTEHSKATNL 196

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 23/201 (11%)
Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLG 803
           T +  P FI+  +           F  Q +  P+P+++W +  ++V  S   ++++   G
Sbjct: 2   TGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKV-SSQRFEVIEFDDG 60
Query: 804 VCH-LKIHALEVA-DQAEWKCIATNDFGQSITSCFLKL----NVPKHYKKPKFLEELKAV 857
               L+I  L V  D+A ++C ATN  G+  TS  L +     +P  +       +LK V
Sbjct: 61  AGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLK-V 119
Query: 858 LSEGGAVNLECKVIGVPQPTLKWFKD----------GR--ELKAGDIHKIISGEDGTCCL 905
           + +     + C   G P P + WFKD          GR  +L++G +  I S E+     
Sbjct: 120 VEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQ-IESSEESD--Q 176
Query: 906 GIYTCEAHNCMGTTSSSAALL 926
           G Y C A N  GT  S+ A L
Sbjct: 177 GKYECVATNSAGTRYSAPANL 197

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 78/189 (41%), Gaps = 17/189 (8%)
Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRT--QHDGNFYFI 407
           P  IR+  +  V+VG  A      R      I W +N +K+   +   T  +  G    +
Sbjct: 9   PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 68
Query: 408 DLSSVSLF-DSGRWTCLAENAVGRSHCSCELSVLVPKAYKAP----FFTKELEAILTEQG 462
            +  V    D   + C+AEN VG +  S + ++ + +  K P      T+     + E G
Sbjct: 69  RIEPVRAGRDDAPYECVAENGVGDA-VSADATLTIYEGDKTPAGFPVITQGPGTRVIEVG 127
Query: 463 -TVSLECKVMGIPTPQLIWYKDNKKIKAG-------DIFALTANPKDPSSLGTYTCEAVN 514
            TV + CK +G PTP + W K+  K+          D F    N ++    G Y C A N
Sbjct: 128 HTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSRE-EDQGKYECVAEN 186
Query: 515 CMGAAFSTS 523
            MG   S +
Sbjct: 187 SMGTEHSKA 195

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 29/194 (14%)
Query: 462 GTVSLECKVMGIPTPQLIWYKDNKKI-----------KAGDIFALTANP-KDPSSLGTYT 509
           G  S  C   G P P ++W K+ KK+           + G I  L   P +       Y 
Sbjct: 24  GVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYE 83
Query: 510 CEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAI 569
           C A N +G A S    +     +  + D  P          P+  +       ++G + +
Sbjct: 84  CVAENGVGDAVSADATL-----TIYEGDKTPAG-------FPVITQGPGTRVIEVGHTVL 131
Query: 570 LECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATS 629
           + C+ +  P P +IYW   +  V+ S+  + + DG     ++I      D G+++CVA +
Sbjct: 132 MTCKAIGNPTP-NIYWIKNQTKVDMSNPRYSLKDGF----LQIENSREEDQGKYECVAEN 186
Query: 630 SSGVKQFSAAYVHV 643
           S G +   A  ++V
Sbjct: 187 SMGTEHSKATNLYV 200

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 18/166 (10%)
Query: 776 PEPKVSWFRDDQQVVESDN-VKILKETLGVCHLKIHALEVA-DQAEWKCIATNDFGQSIT 833
           P P + W ++ ++V  + +   +L++  G+  L+I  +    D A ++C+A N  G ++ 
Sbjct: 36  PPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAV- 94
Query: 834 SCFLKLNVPKHYKKPKFLEELKA-----VLSEGGAVNLECKVIGVPQPTLKWFKDGRELK 888
           S    L + +  K P     +       V+  G  V + CK IG P P + W K+  + K
Sbjct: 95  SADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKN--QTK 152
Query: 889 AGDIHKIISGEDGTCCL--------GIYTCEAHNCMGTTSSSAALL 926
               +   S +DG   +        G Y C A N MGT  S A  L
Sbjct: 153 VDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNL 198

>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 79/201 (39%), Gaps = 45/201 (22%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKP----GDVYQLTGTSSL----------GSYCCVAK 713
           V F+C   G P PTL+W K+ +E KP    G       T S+          G+Y C+ +
Sbjct: 34  VKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVE 93
Query: 714 NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT-VNEEFKFTVQV 772
           N  G    + QL + +   H               P    GL + +   +    +F  +V
Sbjct: 94  NEYGSINHTYQLDVVERSPH--------------RPILQAGLPANKTVALGSNVEFMCKV 139
Query: 773 SISPEPKVSWFRDDQ--------------QVVESDNVKILKETLGVCHLKIHALEVADQA 818
              P+P + W +  +              Q++++  V    + + V HL+  + E  D  
Sbjct: 140 YSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFE--DAG 197
Query: 819 EWKCIATNDFGQSITSCFLKL 839
           E+ C+A N  G S  S +L +
Sbjct: 198 EYTCLAGNSIGLSHHSAWLTV 218

>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 75/191 (39%), Gaps = 33/191 (17%)
Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
           KF    S +P P + W ++ ++      +   K       + + ++  +D+  + CI  N
Sbjct: 35  KFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVEN 94
Query: 827 DFGQSITSCFLKLNVPKHYKKPKFLEELKA--VLSEGGAVNLECKVIGVPQPTLKWFK-- 882
           ++G SI   +    V +   +P     L A   ++ G  V   CKV   PQP ++W K  
Sbjct: 95  EYG-SINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHI 153
Query: 883 --DGRELKAGDIHKI----------------------ISGEDGTCCLGIYTCEAHNCMGT 918
             +G ++   ++  +                      +S ED     G YTC A N +G 
Sbjct: 154 EVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDA----GEYTCLAGNSIGL 209
Query: 919 TSSSAALLGFE 929
           +  SA L   E
Sbjct: 210 SHHSAWLTVLE 220

>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 79/201 (39%), Gaps = 45/201 (22%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKP----GDVYQLTGTSSL----------GSYCCVAK 713
           V F+C   G P PTL+W K+ +E KP    G       T S+          G+Y C+ +
Sbjct: 35  VKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVE 94
Query: 714 NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT-VNEEFKFTVQV 772
           N  G    + QL + +   H               P    GL + +   +    +F  +V
Sbjct: 95  NEYGSINHTYQLDVVERSPH--------------RPILQAGLPANKTVALGSNVEFMCKV 140
Query: 773 SISPEPKVSWFRDDQ--------------QVVESDNVKILKETLGVCHLKIHALEVADQA 818
              P+P + W +  +              Q++++  V    + + V HL+  + E  D  
Sbjct: 141 YSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFE--DAG 198
Query: 819 EWKCIATNDFGQSITSCFLKL 839
           E+ C+A N  G S  S +L +
Sbjct: 199 EYTCLAGNSIGLSHHSAWLTV 219

>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 33/191 (17%)
Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
           KF    S +P+P + W ++ ++      +   K       + + ++  +D+  + CI  N
Sbjct: 36  KFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVEN 95
Query: 827 DFGQSITSCFLKLNVPKHYKKPKFLEELKA--VLSEGGAVNLECKVIGVPQPTLKWFK-- 882
           ++G SI   +    V +   +P     L A   ++ G  V   CKV   PQP ++W K  
Sbjct: 96  EYG-SINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHI 154
Query: 883 --DGRELKAGDIHKI----------------------ISGEDGTCCLGIYTCEAHNCMGT 918
             +G ++   ++  +                      +S ED     G YTC A N +G 
Sbjct: 155 EVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDA----GEYTCLAGNSIGL 210
Query: 919 TSSSAALLGFE 929
           +  SA L   E
Sbjct: 211 SHHSAWLTVLE 221

>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 79/201 (39%), Gaps = 45/201 (22%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKP----GDVYQLTGTSSL----------GSYCCVAK 713
           V F+C   G P PTL+W K+ +E KP    G       T S+          G+Y C+ +
Sbjct: 34  VKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVE 93
Query: 714 NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT-VNEEFKFTVQV 772
           N  G    + QL + +   H               P    GL + +   +    +F  +V
Sbjct: 94  NEYGSINHTYQLDVVERSPH--------------RPILQAGLPANKTVALGSNVEFMCKV 139
Query: 773 SISPEPKVSWFRDDQ--------------QVVESDNVKILKETLGVCHLKIHALEVADQA 818
              P+P + W +  +              Q++++  V    + + V HL+  + E  D  
Sbjct: 140 YSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFE--DAG 197
Query: 819 EWKCIATNDFGQSITSCFLKL 839
           E+ C+A N  G S  S +L +
Sbjct: 198 EYTCLAGNSIGLSHHSAWLTV 218

>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 33/191 (17%)
Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
           KF    S +P+P + W ++ ++      +   K       + + ++  +D+  + CI  N
Sbjct: 35  KFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVEN 94
Query: 827 DFGQSITSCFLKLNVPKHYKKPKFLEELKA--VLSEGGAVNLECKVIGVPQPTLKWFK-- 882
           ++G SI   +    V +   +P     L A   ++ G  V   CKV   PQP ++W K  
Sbjct: 95  EYG-SINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHI 153
Query: 883 --DGRELKAGDIHKI----------------------ISGEDGTCCLGIYTCEAHNCMGT 918
             +G ++   ++  +                      +S ED     G YTC A N +G 
Sbjct: 154 EVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDA----GEYTCLAGNSIGL 209
Query: 919 TSSSAALLGFE 929
           +  SA L   E
Sbjct: 210 SHHSAWLTVLE 220

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 37/200 (18%)
Query: 652 PRFVES-LKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELK------------PGDVYQ 698
           PRF  + +       G+ SF C+  G P P + W K  +++              G V +
Sbjct: 7   PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLR 66
Query: 699 ---LTGTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLL--LLTNNKAPKFIE 753
              L        Y CVA N +G+   ST+LT+         ED++     T +  P+   
Sbjct: 67  IQPLRTPRDEAIYECVASNNVGEISVSTRLTV-------LREDQIPRGFPTIDMGPQLKV 119
Query: 754 GLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDN---VKILK-ETLGVCHLKI 809
             ++  AT+          S +P+P+++WF+D   V  S+N   +K L+ E++G   L+I
Sbjct: 120 VERTRTATM------LCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGA--LQI 171
Query: 810 HALEVADQAEWKCIATNDFG 829
              E +DQ +++C+ATN  G
Sbjct: 172 EQSEESDQGKYECVATNSAG 191

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 768 FTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVA-DQAEWKCIATN 826
           F  Q +  P PK+ W +  ++V       I  +      L+I  L    D+A ++C+A+N
Sbjct: 26  FICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASN 85
Query: 827 DFGQSITSCFLKL----NVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFK 882
           + G+   S  L +     +P+ +       +LK V     A  L C   G P P + WFK
Sbjct: 86  NVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATML-CAASGNPDPEITWFK 144
Query: 883 D----------GR--ELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALL 926
           D          GR  +L++  I  +   +      G Y C A N  GT  S+ A L
Sbjct: 145 DFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANL 200

>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 843 KHYKKPKFLEE-LKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDG 901
           K + KP F +  L   + EG A   +CKV G P P + WFKD   +K     +I   E+G
Sbjct: 37  KPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG 96
Query: 902 TCCLGI----------YTCEAHNCMGTTSSSAALL 926
            C L I          YTC+A N +G  + +A LL
Sbjct: 97  NCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELL 131

>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure Length = 424

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 95/248 (38%), Gaps = 36/248 (14%)
Query: 250 HDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE 309
           H I + VG   +L++   + TE+    D N   P S              + +NRD +T+
Sbjct: 102 HGIELSVG--EKLVLNCTARTELNVGIDFNWEYPSSKHQHK---------KLVNRDLKTQ 150
Query: 310 -----------LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 358
                      L I  V R D G Y+  AS  SG  T K    V        AF   +  
Sbjct: 151 SGSEMKKFLSTLTIDGVTRSDQGLYTCAAS--SGLMTKKNSTFVRVHEKPFVAFGSGMES 208
Query: 359 IA-VKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDS 417
           +    VG R R+  +       +I WY+N   LE N   +  H      + +  VS  D+
Sbjct: 209 LVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGH-----VLTIMEVSERDT 263
Query: 418 GRWTCLAENAVGRSHCS--CELSVLVPKAYKAPFFTKELEAILTEQGTV-SLECKVMGIP 474
           G +T +  N + +   S    L V VP           +++   + GT  +L C V  IP
Sbjct: 264 GNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSY--QYGTTQTLTCTVYAIP 321
Query: 475 TPQLI-WY 481
            P  I WY
Sbjct: 322 PPHHIHWY 329

>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure Length = 424

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 127/320 (39%), Gaps = 59/320 (18%)
Query: 357 HDIAVKVGTRARLLVEIRSPTEIKI--HWYRNDRKLEENKI----YRTQHDGN----FYF 406
           H I + VG +  L    R+   + I  +W     K +  K+     +TQ           
Sbjct: 102 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 161
Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPF--FTKELEAIL--TEQG 462
           + +  V+  D G +TC A + +     S  + V     ++ PF  F   +E+++  T   
Sbjct: 162 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV-----HEKPFVAFGSGMESLVEATVGE 216
Query: 463 TVSLECKVMGIPTPQLIWYKD------NKKIKAGDIFALTANPKDPSSLGTYTCEAVNCM 516
            V +  K +G P P++ WYK+      N  IKAG +  LT         G YT    N  
Sbjct: 217 RVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHV--LTIMEVSERDTGNYTVILTN-- 272
Query: 517 GAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPA-PIFIKEVENVKAKIGTSAILECQVL 575
                    I++ +QS +    V     +PP       I  V++ +   GT+  L C V 
Sbjct: 273 --------PISKEKQSHV----VSLVVYVPPQIGEKSLISPVDSYQ--YGTTQTLTCTVY 318
Query: 576 VPPWPRSIYWY---NKEGVVEAS-----------DKYHIMADGLGGYSIEINYLE-AVDD 620
             P P  I+WY    +E   E S           +++  + D  GG  IE+N  + A+ +
Sbjct: 319 AIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIE 378
Query: 621 GEWKCVATSSSGVKQFSAAY 640
           G+ K V+T        SA Y
Sbjct: 379 GKNKTVSTLVIQAANVSALY 398

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 5/149 (3%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETLGVCH 806
           AP F E L++             +V+  P+P V W+R  ++++ +D +K  ++E  G  H
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII-ADGLKYRIQEFKGGYH 62
Query: 807 -LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLS-EGGAV 864
            L I ++   D   ++  ATN  G    +  L++ VP     PK LE + AV +  G  V
Sbjct: 63  QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122
Query: 865 NLECKVIGVPQPTLKWFKDGRELKAGDIH 893
           +++    G P P + W K G++L   + H
Sbjct: 123 SIKIPFSGKPDPVITWQK-GQDLIDNNGH 150

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 13/110 (11%)
Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKA-----------GDIHKI 895
           P F EEL+ + +       L CKV G P+P +KW++ G+E+ A           G  H++
Sbjct: 5   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 896 ISGEDGTCCLGIYTCEAHNCMGTTSSSAAL-LGFEDKSQIEKAEEGKKAL 944
           I          +Y   A N  G+ S +A+L +    K  + K  EG  A+
Sbjct: 65  IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAV 114

>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 843 KHYKKPKFLEE-LKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDG 901
           K + KP F +  L   + EG A   +CKV G P P + WFKD   +K     +I   E+G
Sbjct: 37  KPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG 96
Query: 902 TCCLGI----------YTCEAHNCMGTTSSSAALL 926
            C L I          YTC+A N +G  + +A LL
Sbjct: 97  NCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELL 131

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 6/188 (3%)
Query: 652 PRFVESLK-AVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGSYCC 710
           PRF++  K  +    G+ SF C+  G P P + W K  +++       +    S G+   
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 711 VAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLK-SCQATVNEEFKFT 769
           +      + E+  +   ++    ++   KL +L  ++ P     +    Q  V E  +  
Sbjct: 67  IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTA 126
Query: 770 VQV---SISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
             +   S +P+P+++WF+D   V  S +   +K+ L    L+I + E  DQ +++C+ATN
Sbjct: 127 TMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ-LRSGALQIESSEETDQGKYECVATN 185
Query: 827 DFGQSITS 834
             G   +S
Sbjct: 186 SAGVRYSS 193

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 82/201 (40%), Gaps = 23/201 (11%)
Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETL 802
           T  + P+FI+  K           F  Q +  P+P+V+W +  ++V       I   E+ 
Sbjct: 2   TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
Query: 803 GVCHLKIHALEVA-DQAEWKCIATNDFGQSITSCFLKL----NVPKHYKKPKFLEELKAV 857
           G   L+I  L    D+  ++C+A N  G+      L +     +P  +       +LK V
Sbjct: 62  GAV-LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Query: 858 LSEGGAVNLECKVIGVPQPTLKWFKD----------GR--ELKAGDIHKIISGEDGTCCL 905
                A  L C   G P P + WFKD          GR  +L++G +  I S E+     
Sbjct: 121 ERTRTATML-CAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQ-IESSEETD--Q 176
Query: 906 GIYTCEAHNCMGTTSSSAALL 926
           G Y C A N  G   SS A L
Sbjct: 177 GKYECVATNSAGVRYSSPANL 197

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 6/188 (3%)
Query: 652 PRFVESLK-AVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGSYCC 710
           PRF++  K  +    G+ SF C+  G P P + W K  +++       +    S G+   
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 711 VAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLK-SCQATVNEEFKFT 769
           +      + E+  +   ++    ++   KL +L  ++ P     +    Q  V E  +  
Sbjct: 67  IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTA 126
Query: 770 VQV---SISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
             +   S +P+P+++WF+D   V  S +   +K+ L    L+I + E  DQ +++C+ATN
Sbjct: 127 TMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ-LRSGALQIESSEETDQGKYECVATN 185
Query: 827 DFGQSITS 834
             G   +S
Sbjct: 186 SAGVRYSS 193

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 82/201 (40%), Gaps = 23/201 (11%)
Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETL 802
           T  + P+FI+  K           F  Q +  P+P+V+W +  ++V       I   E+ 
Sbjct: 2   TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
Query: 803 GVCHLKIHALEVA-DQAEWKCIATNDFGQSITSCFLKL----NVPKHYKKPKFLEELKAV 857
           G   L+I  L    D+  ++C+A N  G+      L +     +P  +       +LK V
Sbjct: 62  GAV-LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Query: 858 LSEGGAVNLECKVIGVPQPTLKWFKD----------GR--ELKAGDIHKIISGEDGTCCL 905
                A  L C   G P P + WFKD          GR  +L++G +  I S E+     
Sbjct: 121 ERTRTATML-CAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQ-IESSEETD--Q 176
Query: 906 GIYTCEAHNCMGTTSSSAALL 926
           G Y C A N  G   SS A L
Sbjct: 177 GKYECVATNSAGVRYSSPANL 197

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 81/201 (40%), Gaps = 42/201 (20%)
Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELK-----PGDVYQLTGTSSL 705
           PR VE    ++   G   +  CK  G PTPT++W+K  E ++     P     L  + SL
Sbjct: 10  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 706 ---------------GSYCCVAKNVMGKAES-STQLTIEDIRNHLSEEDKLLLLTNNKAP 749
                          G Y CVA+N +G+A S    L +  +R+   +    +++   + P
Sbjct: 70  FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGE-P 128
Query: 750 KFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKI 809
             +E    CQ                PEP +SW +D   + + D     + T+    L I
Sbjct: 129 AVME----CQPPRGH-----------PEPTISWKKDGSPLDDKDE----RITIRGGKLMI 169
Query: 810 HALEVADQAEWKCIATNDFGQ 830
                +D  ++ C+ TN  G+
Sbjct: 170 TYTRKSDAGKYVCVGTNMVGE 190

>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETLGVCH 806
           AP F E L++             +V+  P+P V W+R  ++++ +D +K  ++E  G  H
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII-ADGLKYRIQEFKGGYH 62
Query: 807 -LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLS-EGGAV 864
            L I ++   D   ++  ATN  G    +  L++ VP     PK LE + AV +  G  V
Sbjct: 63  QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122
Query: 865 NLECKVIGVPQPTLKWFKDGREL 887
           +++    G P P + W K G++L
Sbjct: 123 SIKIPFSGKPDPVITWQK-GQDL 144

>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 21/114 (18%)
Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKA-----------GDIHKI 895
           P F EEL+ + +       L CKV G P+P +KW++ G+E+ A           G  H++
Sbjct: 5   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 896 I----SGEDGTCCLGIYTCEAHNCMGTTSSSAAL-LGFEDKSQIEKAEEGKKAL 944
           I    + +D T    +Y   A N  G+ S +A+L +    K  + K  EG  A+
Sbjct: 65  IIASVTDDDAT----VYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAV 114

>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)
Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETLGVCH 806
           AP F E L++             +V+  P+P V W+R  ++++ +D +K  ++E  G  H
Sbjct: 2   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII-ADGLKYRIQEFKGGYH 60
Query: 807 -LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLS-EGGAV 864
            L I ++   D   ++  ATN  G    +  L++ VP     PK LE + AV +  G  V
Sbjct: 61  QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 120
Query: 865 NLECKVIGVPQPTLKWFKDGREL 887
           +++    G P P + W K G++L
Sbjct: 121 SIKIPFSGKPDPVITWQK-GQDL 142

>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 21/114 (18%)
Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKA-----------GDIHKI 895
           P F EEL+ + +       L CKV G P+P +KW++ G+E+ A           G  H++
Sbjct: 3   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 62
Query: 896 I----SGEDGTCCLGIYTCEAHNCMGTTSSSAAL-LGFEDKSQIEKAEEGKKAL 944
           I    + +D T    +Y   A N  G+ S +A+L +    K  + K  EG  A+
Sbjct: 63  IIASVTDDDAT----VYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAV 112

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 93/434 (21%), Positives = 160/434 (36%), Gaps = 86/434 (19%)
Query: 446 KAPFFTKELEAIL--TEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD-- 501
           K P F KE    +  +      +ECK  G P P++IW + +     GD+  L     D  
Sbjct: 8   KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSD-GTAVGDVPGLRQISSDGK 66
Query: 502 ----PSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEV 557
               P     Y  E    + A       +AR Q   + + DV   +++    A  +  +V
Sbjct: 67  LVFPPFRAEDYRQEVHAQVYAC------LARNQFGSIISRDVHVRAVV----AQYYEADV 116
Query: 558 ENVKAKIGTSAILECQV--LVPPWPRSIYWYNKE-----GVVEASDKYHIMADGLGGYSI 610
                  G SA+++C +   V  +   + W+  E        E   KY ++  G      
Sbjct: 117 NKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG------ 170
Query: 611 EINYLEAVDDGEWKCVATSS----SGVKQFSAAYVHVLMPKNY-----RKPRFVESLKAV 661
           E++  E   +  +K     +    +G  + SA    +++ +       R P  V+    +
Sbjct: 171 ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLEL 230
Query: 662 MTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD-------VYQLTGTSSL--------G 706
           M     +S  C   GFP P+ +W+K  E             V Q++GT  +        G
Sbjct: 231 MVAH-TISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSG 289
Query: 707 SYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEF 766
            Y CV  N +G     T LT+    +  ++ D      +   P                 
Sbjct: 290 KYLCVVNNSVGGESVETVLTVTAPLS--AKIDPPTQTVDFGRPAV--------------- 332
Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
            FT Q + +P   VSW +D + +  S++V           L+I +++  D+  ++C   N
Sbjct: 333 -FTCQYTGNPIKTVSWMKDGKAIGHSESV-----------LRIESVKKEDKGMYQCFVRN 380
Query: 827 DFGQSITSCFLKLN 840
           D   +  S  LKL 
Sbjct: 381 DRESAEASAELKLG 394

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 93/434 (21%), Positives = 160/434 (36%), Gaps = 86/434 (19%)
Query: 446 KAPFFTKELEAIL--TEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD-- 501
           K P F KE    +  +      +ECK  G P P++IW + +     GD+  L     D  
Sbjct: 2   KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSD-GTAVGDVPGLRQISSDGK 60
Query: 502 ----PSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEV 557
               P     Y  E    + A       +AR Q   + + DV   +++    A  +  +V
Sbjct: 61  LVFPPFRAEDYRQEVHAQVYAC------LARNQFGSIISRDVHVRAVV----AQYYEADV 110
Query: 558 ENVKAKIGTSAILECQV--LVPPWPRSIYWYNKE-----GVVEASDKYHIMADGLGGYSI 610
                  G SA+++C +   V  +   + W+  E        E   KY ++  G      
Sbjct: 111 NKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG------ 164
Query: 611 EINYLEAVDDGEWKCVATSS----SGVKQFSAAYVHVLMPKNY-----RKPRFVESLKAV 661
           E++  E   +  +K     +    +G  + SA    +++ +       R P  V+    +
Sbjct: 165 ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLEL 224
Query: 662 MTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD-------VYQLTGTSSL--------G 706
           M     +S  C   GFP P+ +W+K  E             V Q++GT  +        G
Sbjct: 225 MVAH-TISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSG 283
Query: 707 SYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEF 766
            Y CV  N +G     T LT+    +  ++ D      +   P                 
Sbjct: 284 KYLCVVNNSVGGESVETVLTVTAPLS--AKIDPPTQTVDFGRPAV--------------- 326
Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
            FT Q + +P   VSW +D + +  S++V           L+I +++  D+  ++C   N
Sbjct: 327 -FTCQYTGNPIKTVSWMKDGKAIGHSESV-----------LRIESVKKEDKGMYQCFVRN 374
Query: 827 DFGQSITSCFLKLN 840
           D   +  S  LKL 
Sbjct: 375 DRESAEASAELKLG 388

>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin Length = 108

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 23/109 (21%)
Query: 829 GQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELK 888
           G + T+ F ++ + KHYK           + EG  V   C+V G P+P + WFKDG+++ 
Sbjct: 2   GSNATAPFFEMKL-KHYK-----------IFEGMPVTFTCRVAGNPKPKIYWFKDGKQIS 49
Query: 889 AGDIHKIISGE-DGTCCL----------GIYTCEAHNCMGTTSSSAALL 926
               H  I  + DGTC L          G YT  A N  G  S +  L+
Sbjct: 50  PKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRVSCTGRLM 98

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 94/433 (21%), Positives = 172/433 (39%), Gaps = 85/433 (19%)
Query: 446 KAPFFTKEL--EAILTEQGTVSLECKVMGIPTPQLIWYKDNK------------KIKAGD 491
           + P  TK+   + I+  +  + +EC+  G P P   W ++++            + ++G 
Sbjct: 15  QPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGT 74
Query: 492 I---FALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPG 548
           +   F     P++    G Y C A N  G A S +R+  +  +S                
Sbjct: 75  LVIDFRSGGRPEE--YEGEYQCFARNKFGTALS-NRIRLQVSKS---------------- 115
Query: 549 PAPIFIKE-VENVKAKIGTSAILECQVLVPPWPRS--IYWYNKEGVVEASDKYHIMADGL 605
             P++ KE ++ V  + G    L+C    PP   S  I+W +        DK   ++ G 
Sbjct: 116 --PLWPKENLDPVVVQEGAPLTLQCNP--PPGLPSPVIFWMSSSMEPITQDKR--VSQGH 169
Query: 606 GGYSIEINYLEAVDDGEWKCVATS--SSGVKQFSAAYVHVLMPKNY--RKPRFVE---SL 658
            G     N +      ++ C A    +  ++Q +   + VL  +    R P F+    + 
Sbjct: 170 NGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTA 229
Query: 659 KAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKPGD---------VYQLTGTSS--LG 706
            + M   G+ +  EC   G PTP + W+K   +L P D           ++T  S    G
Sbjct: 230 SSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDL-PSDKAKFENFNKALRITNVSEEDSG 288
Query: 707 SYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEF 766
            Y C+A N MG    +  + ++     L E   L+L          +G   C+A  N   
Sbjct: 289 EYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGE------DGRLVCRANGNP-- 340
Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
           K TVQ  ++ EP  S   +  + V  D + I ++T           +++ +A ++C  +N
Sbjct: 341 KPTVQWMVNGEPLQSAPPNPNREVAGDTI-IFRDT-----------QISSRAVYQCNTSN 388
Query: 827 DFGQSITSCFLKL 839
           + G  + + F+ +
Sbjct: 389 EHGYLLANAFVSV 401

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 129/337 (38%), Gaps = 61/337 (18%)
Query: 620 DGEWKCVATSSSGVKQFSAAYVHV----LMPKNYRKPRFVESLKAVMTDDGL-VSFECKV 674
           +GE++C A +  G    +   + V    L PK        E+L  V+  +G  ++ +C  
Sbjct: 89  EGEYQCFARNKFGTALSNRIRLQVSKSPLWPK--------ENLDPVVVQEGAPLTLQCNP 140
Query: 675 V-GFPTPTLQWFKDNEEL----------KPGDVY--QLTGTSSLGSYCCVAK-NVMGKAE 720
             G P+P + W   + E             GD+Y   +        Y C A+ +     +
Sbjct: 141 PPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQ 200
Query: 721 SSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFI--EGLKSCQATV-NEEFKFTVQVSISPE 777
                T++ +      E         + P F+  +G  S Q  +   +       S  P 
Sbjct: 201 QKNPFTLKVLTTRGVAE---------RTPSFMYPQGTASSQMVLRGMDLLLECIASGVPT 251
Query: 778 PKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFL 837
           P ++W++    +  SD  K   E      L+I  +   D  E+ C+A+N  G    +  +
Sbjct: 252 PDIAWYKKGGDL-PSDKAKF--ENFNKA-LRITNVSEEDSGEYFCLASNKMGSIRHTISV 307
Query: 838 KLNVPKHYKKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELK-------- 888
           ++        P +L+E K  +L+ G    L C+  G P+PT++W  +G  L+        
Sbjct: 308 RVKA-----APYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNR 362
Query: 889 --AGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSA 923
             AGD   II  +       +Y C   N  G   ++A
Sbjct: 363 EVAGDT--IIFRDTQISSRAVYQCNTSNEHGYLLANA 397

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 73/184 (39%), Gaps = 33/184 (17%)
Query: 672 CKVVGFPTPTLQWFKDNEELKP------------GDVYQLTGTSSLGSYCCVAKNVMGKA 719
           C+V   P P + W   NEE+                       S  G Y C      G+ 
Sbjct: 24  CRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC-----EGRV 78
Query: 720 ESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATV--NEEFKFTVQVSISPE 777
           E+  ++   DI           ++  N  P      KS  AT    EE  F+ + S SPE
Sbjct: 79  EARGEIDFRDI-----------IVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPE 127
Query: 778 PKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFL 837
           P +SWFR+  +++E +   ILK +     L +  +  +D   + C ATN  G+     FL
Sbjct: 128 PAISWFRNG-KLIEENEKYILKGS--NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 184
Query: 838 KLNV 841
           ++ V
Sbjct: 185 QVFV 188

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 17/176 (9%)
Query: 764 EEFKFTVQVSISPEPKVSWFRDDQQVVE-SDNVKILKETLGVCHLKIHALEVADQAEWKC 822
           E+ +   +VS SP P VSW   +++V   SDN   +   L   +L+I  +  +D+  ++C
Sbjct: 18  EDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM---LANNNLQILNINKSDEGIYRC 74
Query: 823 IATNDFGQSI--TSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKW 880
               +    I      + +NVP     P+  +   A    G  +   C+  G P+P + W
Sbjct: 75  EGRVEARGEIDFRDIIVIVNVPPAISMPQ--KSFNATAERGEEMTFSCRASGSPEPAISW 132
Query: 881 FKDGRELKAGDIHKIISGEDGTCCL--------GIYTCEAHNCMGTTSSSAALLGF 928
           F++G+ ++  + + I+ G +    +        G Y C A N  G     A L  F
Sbjct: 133 FRNGKLIEENEKY-ILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 94/436 (21%), Positives = 157/436 (36%), Gaps = 89/436 (20%)
Query: 446 KAPFFTKELEAIL--TEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD-- 501
           K P F KE    +  +      +ECK  G P P++IW + +     GD+  L     D  
Sbjct: 2   KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSD-GTAVGDVPGLRQISSDGK 60
Query: 502 ----PSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEV 557
               P     Y  E    + A       +AR Q   + + DV   +++       +  E 
Sbjct: 61  LVFPPFRAEDYRQEVHAQVYAC------LARNQFGSIISRDVHVRAVVIQS----YESEA 110
Query: 558 ENVKAKIGTSAILECQV--LVPPWPRSIYWYNKEG-------VVEASDKYHIMADGLGGY 608
           +N     G S +++C++   V  +     W + EG         E   KY ++  G    
Sbjct: 111 DNEYVIRGNSVVMKCEIPSYVADFVFVDLWLDSEGRNYYPNNAAETDGKYLVLPSG---- 166
Query: 609 SIEINYLEAVDDGEWKCVATSS----SGVKQFSAAYVHVLM--PKNYRKPRFVESLKAVM 662
             E++  E   +  +K     +    +G  + SA    +++  P    +P+     K   
Sbjct: 167 --ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGSVRPKVNPQDKHQF 224
Query: 663 TDDGLV---SFECKVVGFPTPTLQWFKDNEELKPGD-------VYQLTGTSSL------- 705
            D  L    S  C    +PTP+ +W+K  E             V Q++GT  +       
Sbjct: 225 IDVELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVED 284
Query: 706 -GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT-VN 763
            G Y CV  N +G     T LT+                    AP   +     Q     
Sbjct: 285 SGKYLCVVNNSVGGESVETVLTV-------------------TAPLSAKIDPPTQTVDFG 325
Query: 764 EEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCI 823
               FT Q + +P   VSW +D + +  S++V           L+I +++  D+  ++C 
Sbjct: 326 RPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV-----------LRIESVKKEDKGMYQCF 374
Query: 824 ATNDFGQSITSCFLKL 839
             ND   +  S  LKL
Sbjct: 375 VRNDRESAEASAELKL 390

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 847 KPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL 905
           +P FL+    + + EG    ++CKV G+P P L W  DG+ ++    HK++  E+G   L
Sbjct: 9   RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSL 68
Query: 906 ----------GIYTCEAHNCMGTTSSSAALL 926
                     GIYTC A N  G  S S  L+
Sbjct: 69  IIEPVTSRDAGIYTCIATNRAGQNSFSLELV 99

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 83/207 (40%), Gaps = 28/207 (13%)
Query: 449 FFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK------------AGDIFALT 496
           F  K ++ I    G  S  C+  G P P++ W K  KK+             AG +  + 
Sbjct: 9   FIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQ 68
Query: 497 ANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKE 556
              + P     Y C A N  G       V    + + L  D       +PPG   I +  
Sbjct: 69  PL-RTPRDENIYECVAQNPHG------EVTVHAKLTVLREDQ------LPPGFPNIDMGP 115
Query: 557 VENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLE 616
              V  +  T+ +L C     P P   ++ +   V  ++    I     GG  IE +  E
Sbjct: 116 QLKVVERTRTATML-CAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIESS--E 172
Query: 617 AVDDGEWKCVATSSSGVKQFSAAYVHV 643
             D G+++CVA++S+GV+  S A ++V
Sbjct: 173 ETDQGKYECVASNSAGVRYSSPANLYV 199

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 34/202 (16%)
Query: 652 PRFVES-LKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGS--- 707
           P F++  +  +    G+ SF C+  G P P + W K  +++       +    S G+   
Sbjct: 7   PVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 708 ------------YCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL 755
                       Y CVA+N  G+     +LT+         ED+L        P F    
Sbjct: 67  IQPLRTPRDENIYECVAQNPHGEVTVHAKLTV-------LREDQL-------PPGFPNID 112
Query: 756 KSCQATVNEEFKFTVQV---SISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHAL 812
              Q  V E  +    +   S +P+P+++WF+D   V  S +   +K+ L    L+I + 
Sbjct: 113 MGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQ-LRSGGLQIESS 171
Query: 813 EVADQAEWKCIATNDFGQSITS 834
           E  DQ +++C+A+N  G   +S
Sbjct: 172 EETDQGKYECVASNSAGVRYSS 193

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 75/177 (42%), Gaps = 23/177 (12%)
Query: 768 FTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETLGVCHLKIHALEVA-DQAEWKCIAT 825
           F  Q +  P+P+V+W +  ++V       I   E+ G   L+I  L    D+  ++C+A 
Sbjct: 26  FVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV-LRIQPLRTPRDENIYECVAQ 84
Query: 826 NDFGQSITSCFLKL----NVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWF 881
           N  G+      L +     +P  +       +LK V     A  L C   G P P + WF
Sbjct: 85  NPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERTRTATML-CAASGNPDPEITWF 143
Query: 882 KD----------GR--ELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALL 926
           KD          GR  +L++G + +I S E+     G Y C A N  G   SS A L
Sbjct: 144 KDFLPVDPSTSNGRIKQLRSGGL-QIESSEETD--QGKYECVASNSAGVRYSSPANL 197

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 8/148 (5%)
Query: 284 FSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
           F+F  +GD  + G R     + G + L+I+ V+  D GRY   A++  G       L +E
Sbjct: 41  FTF-TEGDKSLDG-RIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 98
Query: 344 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI--YRTQHD 401
                AP FI          G    +  +++S     IHW R+   L        +T   
Sbjct: 99  Y----APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYST 154
Query: 402 GNFYFIDLSSVSLFDSGRWTCLAENAVG 429
           G    ++++  S  D GR+ C A N +G
Sbjct: 155 GRKMILEIAPTSDNDFGRYNCTATNHIG 182

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 60/169 (35%), Gaps = 30/169 (17%)
Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSL 466
           + +  V L DSGR+ C A + +G    S  L +     Y   F + +      E   +++
Sbjct: 65  LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI----EYAPKFISNQTIYYSWEGNPINI 120
Query: 467 ECKVMGIPTPQLIWYKDN-----------KKIKAGDIFALTANPKDPSSLGTYTCEAVNC 515
            C V   P   + W +D            K    G    L   P   +  G Y C A N 
Sbjct: 121 SCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNH 180
Query: 516 MGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKI 564
           +G  F         Q+  L   DVP +      P  + I E+    AK+
Sbjct: 181 IGTRF---------QEYILALADVPSS------PYGVKIIELSQTTAKV 214

>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 41/94 (43%), Gaps = 14/94 (14%)
Query: 651 KPRFVESLK-AVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQL---------- 699
           KP  V  L+   ++ D +  F  K  G P PT  W KD + +  G  Y+L          
Sbjct: 6   KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLE 65
Query: 700 ---TGTSSLGSYCCVAKNVMGKAESSTQLTIEDI 730
              T TS  G Y C  KN  G   SS +LTI+ I
Sbjct: 66  IHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKAI 99

>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLK 808
           P  + GL+    + +   KF V+ +  P P   W +D + + +    K L E  G   L+
Sbjct: 7   PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYK-LSEDKGGFFLE 65
Query: 809 IHALEVADQAEWKCIATNDFGQSITSCFLKL 839
           IH  + +D   + C   N  G   +SC L +
Sbjct: 66  IHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 8/148 (5%)
Query: 284 FSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
           F+F  +GD  + G R     + G + L+I+ V+  D GRY   A++  G       L +E
Sbjct: 41  FTF-TEGDKSLDG-RIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 98
Query: 344 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI--YRTQHD 401
                AP FI          G    +  +++S     IHW R+   L        +T   
Sbjct: 99  Y----APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYST 154
Query: 402 GNFYFIDLSSVSLFDSGRWTCLAENAVG 429
           G    ++++  S  D GR+ C A N +G
Sbjct: 155 GRKMILEIAPTSDNDFGRYNCTATNHIG 182

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 67/189 (35%), Gaps = 32/189 (16%)
Query: 387 DRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYK 446
           D+ L+     + QH  +   + +  V L DSGR+ C A + +G    S  L +     Y 
Sbjct: 47  DKSLDGRIEVKGQHGSSS--LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI----EYA 100
Query: 447 APFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDN-----------KKIKAGDIFAL 495
             F + +      E   +++ C V   P   + W +D            K    G    L
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMIL 160
Query: 496 TANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIK 555
              P   +  G Y C A N +G  F         Q+  L   DV      P  P  + I 
Sbjct: 161 EIAPTSDNDFGRYNCTATNHIGTRF---------QEYILALADV------PSSPYGVKII 205
Query: 556 EVENVKAKI 564
           E+    AK+
Sbjct: 206 ELSQTTAKV 214

>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 22/95 (23%)
Query: 843 KHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGE-DG 901
           KHYK           + EG  V   C+V G P+P + WFKDG+++     H  I  + DG
Sbjct: 16  KHYK-----------IFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG 64
Query: 902 TCCL----------GIYTCEAHNCMGTTSSSAALL 926
           TC L          G YT  A N  G  S +  L+
Sbjct: 65  TCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLM 99

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 153/399 (38%), Gaps = 56/399 (14%)
Query: 153 ARLLVEIRSPTEIKCQFDLNNT-IPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRD 211
           A +L    +PT ++C  + N+  + +S++  G    +     A+ +D    L   R +  
Sbjct: 14  AEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKD-EGSLVFLRPQAS 72
Query: 212 DGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTE 271
           D G Y   A   +G ++++                R+ + IA    T  +  +E R P +
Sbjct: 73  DEGHYQCFAETPAGVASSRV------------ISFRKTYLIASPAKTHEKTPIEGR-PFQ 119
Query: 272 IKCQFDLNNTIP-----FSFRAQGDHPI-----FGNRFRAINRDGRTELNIRRVRRDDGG 321
           + C   L N  P     +  R  G  P      F  R  A   DG     I  V ++D  
Sbjct: 120 LDCV--LPNAYPKPLITWKKRLSGADPNADVTDFDRRITA-GPDGNLYFTI--VTKEDVS 174
Query: 322 ---RYSVTASNES-GYSTAKFELSVESQVPD--------APAFIRRLHDIAVKVGTRARL 369
              +Y  TA N +        E  ++    D         P ++ +  D+  K G    +
Sbjct: 175 DIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSK--DMMAKAGDVTMI 232
Query: 370 LVEIRSPTEIKIHWYRNDRKLEENKIYR-TQHDGNFYFIDLSSVSLF-DSGRWTCLAENA 427
                S      ++++N + +  N   R T+H+       L   +L  D G +TC  +N 
Sbjct: 233 YCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNG 292
Query: 428 VGRSH-CSCELSVLVPKAYKAPFFTKELEAILTEQGT-VSLECKVMGIPTPQLIWYKDNK 485
           VG+    S +L+V+    Y+     K  + I+ +QG  V++ CKV G+P P ++W  + K
Sbjct: 293 VGKPQKHSLKLTVVSAPKYEQ----KPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAK 348
Query: 486 KIKAGDIF----ALTANPKDPSSLGTYTCEAVNCMGAAF 520
            +  G        L          G Y C A N  G  +
Sbjct: 349 PLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKY 387

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 77/368 (20%), Positives = 131/368 (35%), Gaps = 49/368 (13%)
Query: 379 IKIHWYRNDRKL--EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCE 436
           +K  W ++ +    +E+     + +G+  F+   +    D G + C AE   G    +  
Sbjct: 37  VKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQAS---DEGHYQCFAETPAG---VASS 90
Query: 437 LSVLVPKAYKAPFFTKELEAILTEQGTVSLECKV-MGIPTPQLIWYKD------------ 483
             +   K Y      K  E    E     L+C +    P P + W K             
Sbjct: 91  RVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTD 150
Query: 484 -NKKIKAG---DIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDV 539
            +++I AG   +++      +D S +  Y C A N   AA     V+   +   +  D  
Sbjct: 151 FDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKN---AAVDEEVVLVEYEIKGVTKD-- 205
Query: 540 PFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYH 599
             NS     P P ++ +  ++ AK G   ++ C     P     Y+ N + V    +   
Sbjct: 206 --NSGYKGEPVPQYVSK--DMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRI 261
Query: 600 IMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL-MPKNYRKPRFVESL 658
              +   G  +        D+G + C   +  G  Q  +  + V+  PK  +KP      
Sbjct: 262 TRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPE----- 316
Query: 659 KAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKPGD--------VYQLTGTSSLGSYC 709
           K ++   G  V+  CKV G P P + W  + + L  G         V +       G Y 
Sbjct: 317 KVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYG 376
Query: 710 CVAKNVMG 717
           C A N  G
Sbjct: 377 CRATNEHG 384

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 116/299 (38%), Gaps = 45/299 (15%)
Query: 457 ILTEQGTVSLE------CKVMGIPTPQLI-WYKDN--KKIKAGDIFALTANPKDPSSLGT 507
           I+  QG +S+       C+V G    + I W+  N  K        ++  N  D S+L  
Sbjct: 7   IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTI 66
Query: 508 YTCEAVNCMGAAFSTSRVIAR-GQQSFLDNDDVPFNSLM-PPGPAPIFIKEVENVKAKIG 565
           Y     N   A      V A  G QS    +   F  LM    P P   KE        G
Sbjct: 67  YNA---NIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKE--------G 115
Query: 566 TSAILECQVLVPPWPRSIYWYNK-EGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWK 624
             A++ C V V   P +I W +K   V+   D   I+   L    ++I  ++  D+G ++
Sbjct: 116 EDAVIVCDV-VSSLPPTIIWKHKGRDVILKKDVRFIV---LSNNYLQIRGIKKTDEGTYR 171
Query: 625 CVA-TSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQ 683
           C     + G   F    V V +P   +  + + +  A +     V+  C   GFP PT+ 
Sbjct: 172 CEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQS--VTLVCDADGFPEPTMS 229
Query: 684 WFKDNEELK-----------PGDVYQLT----GTSSLGSYCCVAKNVMGKAESSTQLTI 727
           W KD E ++             D  +LT      +    Y C+A+N  G+ ++S  L +
Sbjct: 230 WTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288

>pdb|2EDL|A Chain A, Solution Structure Of The Ig-Like Domain (3801-3897) Of Human Obscurin Length = 110

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 548 GPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGG 607
           GPA  FI++V+N +A+ G +A+L+C+ L    P  + W      +   D+Y +  DG   
Sbjct: 7   GPAR-FIEDVKNQEAREGATAVLQCE-LSKAAP--VEWRKGSETLRGGDRYSLRQDGT-R 61
Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKA 660
             ++I+ L   D GE+ CV     G ++ SA      +P      RF + LK+
Sbjct: 62  CELQIHGLSVADTGEYSCVC----GQERTSATLTVRALP-----ARFTQDLKS 105

>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 81/222 (36%), Gaps = 48/222 (21%)
Query: 646 PKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD---------- 695
           P   R  R  + L AV   +  V F C   G PTP++ W K+  E + G+          
Sbjct: 120 PYWTRPERMDKKLLAVPAAN-TVRFRCPAAGNPTPSISWLKNGREFR-GEHRIGGIKLRH 177
Query: 696 -----VYQLTGTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPK 750
                V +    S  G+Y CV +N  G    +  L + +   H               P 
Sbjct: 178 QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPH--------------RPI 223
Query: 751 FIEGLKSCQ-ATVNEEFKFTVQVSISPEPKVSWFRDDQ--------------QVVESDNV 795
              GL + Q A +  + +F  +V    +P + W +  +               V+++   
Sbjct: 224 LQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGA 283
Query: 796 KILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFL 837
               + L V  L +H +   D  E+ C+A N  G S  S +L
Sbjct: 284 NTTDKELEV--LSLHNVTFEDAGEYTCLAGNSIGFSHHSAWL 323

>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 75/201 (37%), Gaps = 45/201 (22%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD--------------VYQLTGTSSLGSYCCVAK 713
           V F C   G P PT++W K+ +E K                 + +    S  G+Y CV +
Sbjct: 29  VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 88
Query: 714 NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT-VNEEFKFTVQV 772
           N  G    +  L + +   H               P    GL +  +T V  + +F  +V
Sbjct: 89  NEYGSINHTYHLDVVERSRH--------------RPILQAGLPANASTVVGGDVEFVCKV 134
Query: 773 SISPEPKVSWFRDDQ--------------QVVESDNVKILKETLGVCHLKIHALEVADQA 818
               +P + W +  +              +V+++  V    + + V +++    E  D  
Sbjct: 135 YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFE--DAG 192
Query: 819 EWKCIATNDFGQSITSCFLKL 839
           E+ C+A N  G S  S +L +
Sbjct: 193 EYTCLAGNSIGISFHSAWLTV 213

>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 75/187 (40%), Gaps = 33/187 (17%)
Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
           KF      +P P + W ++ ++  +   +   K       L + ++  +D+  + C+  N
Sbjct: 30  KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 89
Query: 827 DFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSE--GGAVNLECKVIGVPQPTLKWFK-- 882
           ++G SI   +    V +   +P     L A  S   GG V   CKV    QP ++W K  
Sbjct: 90  EYG-SINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 148
Query: 883 ---------DG----RELKAGDIH-----------KIISGEDGTCCLGIYTCEAHNCMGT 918
                    DG    + LKA  ++           + ++ ED     G YTC A N +G 
Sbjct: 149 EKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA----GEYTCLAGNSIGI 204
Query: 919 TSSSAAL 925
           +  SA L
Sbjct: 205 SFHSAWL 211

>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In Complex With Fgf Receptor (Fgfr) 2c Length = 220

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 75/201 (37%), Gaps = 45/201 (22%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD--------------VYQLTGTSSLGSYCCVAK 713
           V F C   G P PT++W K+ +E K                 + +    S  G+Y CV +
Sbjct: 27  VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 86
Query: 714 NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT-VNEEFKFTVQV 772
           N  G    +  L + +   H               P    GL +  +T V  + +F  +V
Sbjct: 87  NEYGSINHTYHLDVVERSRH--------------RPILQAGLPANASTVVGGDVEFVCKV 132
Query: 773 SISPEPKVSWFRDDQ--------------QVVESDNVKILKETLGVCHLKIHALEVADQA 818
               +P + W +  +              +V+++  V    + + V +++    E  D  
Sbjct: 133 YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFE--DAG 190
Query: 819 EWKCIATNDFGQSITSCFLKL 839
           E+ C+A N  G S  S +L +
Sbjct: 191 EYTCLAGNSIGISFHSAWLTV 211

>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex Length = 195

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 31/195 (15%)
Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLG----- 803
           P  I G +    T+    +  +QV   P P+V W RD Q +  +D+ +  +  LG     
Sbjct: 9   PGNITGARGLTGTL----RCQLQVQGEP-PEVHWLRDGQILELADSTQT-QVPLGEDEQD 62
Query: 804 ----VCHLKIHALEVADQAEWKCIATNDFGQSITS-CFLKLNVPKHYKKPKFLEELK-AV 857
               V  L+I +L+++D  +++C+        ++   ++ L        P FLEE +   
Sbjct: 63  DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLE-----GLPYFLEEPEDRT 117
Query: 858 LSEGGAVNLECKVIGVPQPT-LKWFKDGRELKAGDIHKI-----ISGEDGTCCLGIYTCE 911
           ++     NL C+  G P+P  L W +D   L     H       + G + T     ++CE
Sbjct: 118 VAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSS---FSCE 174
Query: 912 AHNCMGTTSSSAALL 926
           AHN  G T+S  A +
Sbjct: 175 AHNAKGVTTSRTATI 189

>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2) Length = 220

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 75/201 (37%), Gaps = 45/201 (22%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD--------------VYQLTGTSSLGSYCCVAK 713
           V F C   G P PT++W K+ +E K                 + +    S  G+Y CV +
Sbjct: 29  VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 88
Query: 714 NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT-VNEEFKFTVQV 772
           N  G    +  L + +   H               P    GL +  +T V  + +F  +V
Sbjct: 89  NEYGSINHTYHLDVVERSPH--------------RPILQAGLPANASTVVGGDVEFVCKV 134
Query: 773 SISPEPKVSWFRDDQ--------------QVVESDNVKILKETLGVCHLKIHALEVADQA 818
               +P + W +  +              +V+++  V    + + V +++    E  D  
Sbjct: 135 YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFE--DAG 192
Query: 819 EWKCIATNDFGQSITSCFLKL 839
           E+ C+A N  G S  S +L +
Sbjct: 193 EYTCLAGNSIGISFHSAWLTV 213

>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin Length = 100

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL- 905
           P+F++  + + + EG    ++ KV G+P P + W+ +GR +++ D+HK+I  E G   L 
Sbjct: 6   PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 906 ---------GIYTCEAHNCMGTTSSSAAL 925
                    G Y C A N  G  + +  L
Sbjct: 66  FEVVRASDAGAYACVAKNRAGEATFTVQL 94

>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex Length = 219

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 75/201 (37%), Gaps = 45/201 (22%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD--------------VYQLTGTSSLGSYCCVAK 713
           V F C   G P PT++W K+ +E K                 + +    S  G+Y CV +
Sbjct: 28  VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 87
Query: 714 NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT-VNEEFKFTVQV 772
           N  G    +  L + +   H               P    GL +  +T V  + +F  +V
Sbjct: 88  NEYGSINHTYHLDVVERSPH--------------RPILQAGLPANASTVVGGDVEFVCKV 133
Query: 773 SISPEPKVSWFRDDQ--------------QVVESDNVKILKETLGVCHLKIHALEVADQA 818
               +P + W +  +              +V+++  V    + + V +++    E  D  
Sbjct: 134 YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFE--DAG 191
Query: 819 EWKCIATNDFGQSITSCFLKL 839
           E+ C+A N  G S  S +L +
Sbjct: 192 EYTCLAGNSIGISFHSAWLTV 212

>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 75/201 (37%), Gaps = 45/201 (22%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD--------------VYQLTGTSSLGSYCCVAK 713
           V F C   G P PT++W K+ +E K                 + +    S  G+Y CV +
Sbjct: 29  VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 88
Query: 714 NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT-VNEEFKFTVQV 772
           N  G    +  L + +   H               P    GL +  +T V  + +F  +V
Sbjct: 89  NEYGSINHTYHLDVVERWPH--------------RPILQAGLPANASTVVGGDVEFVCKV 134
Query: 773 SISPEPKVSWFRDDQ--------------QVVESDNVKILKETLGVCHLKIHALEVADQA 818
               +P + W +  +              +V+++  V    + + V +++    E  D  
Sbjct: 135 YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFE--DAG 192
Query: 819 EWKCIATNDFGQSITSCFLKL 839
           E+ C+A N  G S  S +L +
Sbjct: 193 EYTCLAGNSIGISFHSAWLTV 213

>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab Length = 241

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 85/225 (37%), Gaps = 43/225 (19%)
Query: 646 PKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD---------- 695
           P   R  R  + L AV   +  V F C   G PTP++ W K+  E + G+          
Sbjct: 12  PYWTRPERMDKKLLAVPAAN-TVRFRCPAAGNPTPSISWLKNGREFR-GEHRIGGIKLRH 69
Query: 696 -----VYQLTGTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPK 750
                V +    S  G+Y CV +N  G    +  L + +   H               P 
Sbjct: 70  QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPH--------------RPI 115
Query: 751 FIEGLKSCQ-ATVNEEFKFTVQVSISPEPKVSWFRD---DQQVVESDN---VKILKETLG 803
              GL + Q A +  + +F  +V    +P + W +    +   V  D    V +LK  + 
Sbjct: 116 LQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWIS 175
Query: 804 V-----CHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPK 843
                   L++  +   D  E+ C ATN  G +  + +L ++ P+
Sbjct: 176 ESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPR 220

>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor Receptor 2 In Complex With Fgf1 Length = 216

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 76/203 (37%), Gaps = 49/203 (24%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTG----------------TSSLGSYCCV 711
           V F C   G P PT +W K+ +E K    +++ G                 S  G+Y CV
Sbjct: 29  VKFRCPAGGNPXPTXRWLKNGKEFK--QEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCV 86
Query: 712 AKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT-VNEEFKFTV 770
            +N  G    +  L + +   H               P    GL +  +T V  + +F  
Sbjct: 87  VENEYGSINHTYHLDVVERSPH--------------RPILQAGLPANASTVVGGDVEFVC 132
Query: 771 QVSISPEPKVSWFRDDQ--------------QVVESDNVKILKETLGVCHLKIHALEVAD 816
           +V    +P + W +  +              +V+++  V    + + V +++    E  D
Sbjct: 133 KVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFE--D 190
Query: 817 QAEWKCIATNDFGQSITSCFLKL 839
             E+ C+A N  G S  S +L +
Sbjct: 191 AGEYTCLAGNSIGISFHSAWLTV 213

>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring P253r Apert Mutation Length = 231

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 80/205 (39%), Gaps = 48/205 (23%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD--------------VYQLTGTSSLGSYCCVAK 713
           V F C   G P PT++W K+ +E K                 + +    S  G+Y CV +
Sbjct: 37  VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 96
Query: 714 NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT-VNEEFKFTVQV 772
           N  G    +  L + +   H               P    GL +  +T V  + +F  +V
Sbjct: 97  NEYGSINHTYHLDVVERSRH--------------RPILQAGLPANASTVVGGDVEFVCKV 142
Query: 773 SISPEPKVSWFRDDQQVVESDN----------VKILKET-LGVCHLKIHAL---EVADQA 818
               +P + W +     VE +           +K+LK + +   + ++ AL     AD  
Sbjct: 143 YSDAQPHIQWIKH----VEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAG 198
Query: 819 EWKCIATNDFGQSITSCFLKLNVPK 843
           E+ C  +N  GQ+  S +L + +PK
Sbjct: 199 EYICKVSNYIGQANQSAWLTV-LPK 222

>pdb|3S97|C Chain C, Ptprz Cntn1 Complex Length = 201

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 22/160 (13%)
Query: 782 WFRDDQQV-VESDNVKILKETLGVCHLKIHALEVADQAEWKC-IATNDFGQSITSCFLKL 839
           W  ++  V +  D  + + +T G  +L I  +E +D+  + C +++    +S+ S F+ L
Sbjct: 44  WLLNEFPVFITMDKRRFVSQTNG--NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPL 101
Query: 840 -NVPKHYKKP---KFLEELKAVLS-EGGAVNLECKVIGVPQPTLKWFKDGRELK------ 888
             +P+   KP     + + K V +  G  V LEC  +G P P ++W K    +       
Sbjct: 102 IPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIS 161
Query: 889 -AGDIHKI--ISGEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
            +G + KI  I  ED     GIY CEA N  G     A +
Sbjct: 162 TSGAVLKIFNIQLEDE----GIYECEAENIRGKDKHQARI 197

>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13 Length = 317

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 107/278 (38%), Gaps = 50/278 (17%)
Query: 649 YRKPRFVESLKAVMTDDGLVSFECKVVGFPTPT-LQWFKDNEELKPGDVYQLT-GTSSL- 705
           +  P FVE L   +T +  V  +CKV      T + W+KD  E+   + +    G  +L 
Sbjct: 5   FTGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLL 64
Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLL--TNNKAPKFIEG 754
                    G Y  + K+  GK +S  +L  E  +  + E  K + L  T+ K     EG
Sbjct: 65  ITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEG 124
Query: 755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKI----- 809
           ++           ++       + KV+W  +   +  SD VK      GV   +I     
Sbjct: 125 IQL----------YSFVTYYVEDLKVNWSHNGSAIRYSDRVKT-----GVTGEQIWLQIN 169
Query: 810 ---------HALEVADQAEWKCIATNDFGQSITSCF-----LKLNVPKHYKKPKFLEELK 855
                    + +E+ D         +  GQ+    +     LK        + + L  L 
Sbjct: 170 EPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLP 229
Query: 856 AVLS--EGGAVNLECKVIGVPQPTLKWFKDGRELKAGD 891
            V++  EG A+NL C V G P P + W K+ + L + D
Sbjct: 230 DVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDD 267

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 8/107 (7%)
Query: 331 SGYSTAKFELSVESQVPDA--------PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIH 382
           S YS+ +     E  + DA        P FI + +   V  G  A     + + +   + 
Sbjct: 456 SNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVT 515
Query: 383 WYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG 429
           W+++DR+L+++  Y  +++GN Y + ++ V   D G +T  A+N+ G
Sbjct: 516 WHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYG 562

>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7 Length = 108

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKI--KAGDIFA-----LTAN 498
           AP  T  LE   T  G ++ + C   G P PQ++W+KDN+ +   +G +       LT  
Sbjct: 10  APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIR 69
Query: 499 PKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQ 531
                  G YTC+A + +G A   +  I  G Q
Sbjct: 70  RVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ 102

>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation Length = 231

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 80/205 (39%), Gaps = 48/205 (23%)
Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD--------------VYQLTGTSSLGSYCCVAK 713
           V F C   G P PT++W K+ +E K                 + +    S  G+Y CV +
Sbjct: 37  VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 96
Query: 714 NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT-VNEEFKFTVQV 772
           N  G    +  L + +   H               P    GL +  +T V  + +F  +V
Sbjct: 97  NEYGSINHTYHLDVVERSPH--------------RPILQAGLPANASTVVGGDVEFVCKV 142
Query: 773 SISPEPKVSWFRDDQQVVESDN----------VKILKET-LGVCHLKIHAL---EVADQA 818
               +P + W +     VE +           +K+LK + +   + ++ AL     AD  
Sbjct: 143 YSDAQPHIQWIKH----VEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAG 198
Query: 819 EWKCIATNDFGQSITSCFLKLNVPK 843
           E+ C  +N  GQ+  S +L + +PK
Sbjct: 199 EYICKVSNYIGQANQSAWLTV-LPK 222

>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein Kinase And Immunoglobulin Domains Length = 491

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 8/107 (7%)
Query: 331 SGYSTAKFELSVESQVPDA--------PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIH 382
           S YS+ +     E  + DA        P FI + +   V  G  A     + + +   + 
Sbjct: 350 SNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVT 409
Query: 383 WYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG 429
           W+++DR+L+++  Y  +++GN Y + ++ V   D G +T  A+N+ G
Sbjct: 410 WHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYG 456

>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2 Length = 182

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 11/163 (6%)
Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETLGVCHLKIHALEVADQAEWKCIAT 825
           K    V    EP + W +D   V   D + I + E   +  L + ++E +D   + C   
Sbjct: 21  KLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWC-QV 79
Query: 826 NDFGQSITSCFLKLNV---PKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQP-TLKWF 881
            D G++  S  + L V   P    +PK L      +       L C+ +G P+P T+ W+
Sbjct: 80  EDGGETEISQPVWLTVEGVPFFTVEPKDL-----AVPPNAPFQLSCEAVGPPEPVTIVWW 134
Query: 882 KDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAA 924
           +   ++        +    G      ++CEAHN  G  SS  A
Sbjct: 135 RGTTKIGGPAPSPSVLNVTGVTQSTXFSCEAHNLKGLASSRTA 177

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1075
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-122
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-99
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-93
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-85
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-84
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-65
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-114
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-98
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	9e-88
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-80
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-91
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-89
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	8e-84
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	9e-72
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-64
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-31
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-29
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-85
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-76
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-64
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-61
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-46
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	4e-65
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	4e-63
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-58
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-51
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	8e-42
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-31
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	7e-30
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-20
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-62
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-56
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	9e-53
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-50
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	5e-50
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	7e-47
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	9e-38
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	8e-34
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	6e-60
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-54
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	6e-52
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-47
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-33
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-28
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-26
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	6e-60
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-50
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	5e-49
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-46
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-39
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	6e-35
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	4e-31
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	8e-28
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	8e-21
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	7e-13
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-59
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	8e-56
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-50
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-49
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-48
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-38
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-19
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	5e-13
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	8e-58
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-53
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-52
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	9e-39
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-32
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-30
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	8e-19
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-12
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-57
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	3e-48
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	6e-48
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	5e-42
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	6e-36
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-32
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	3e-27
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-25
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-56
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-52
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-45
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-37
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	5e-30
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-29
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-55
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-52
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-50
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	8e-41
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-34
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	9e-31
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-22
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-55
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	9e-53
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-43
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-36
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-34
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-23
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-13
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-55
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-50
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-44
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	9e-40
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	5e-33
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	5e-32
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	4e-24
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	6e-22
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	5e-16
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-54
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-49
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-47
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-37
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-32
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	4e-30
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-20
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-52
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	9e-46
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	7e-35
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-27
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	4e-22
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	9e-11
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	7e-49
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	5e-41
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	6e-40
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	6e-38
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	7e-33
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-31
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	5e-27
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	7e-23
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	5e-16
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-47
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-46
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	5e-42
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-37
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	7e-36
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-31
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	6e-27
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-22
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	6e-46
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	3e-40
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	8e-38
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-36
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-35
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	6e-33
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-30
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	3e-26
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	5e-19
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-44
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-36
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-36
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-35
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-29
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-24
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	5e-20
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	5e-17
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-42
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-39
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	6e-39
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	9e-35
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-32
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-27
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-23
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-12
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-09
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-40
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-39
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-35
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	9e-35
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-28
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-23
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-20
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	6e-11
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	6e-07
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	5e-40
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	6e-35
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	4e-33
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	4e-31
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	8e-25
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	4e-24
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	6e-21
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	4e-17
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-16
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	3e-13
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-39
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	3e-31
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-29
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	4e-27
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	8e-26
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	8e-25
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	4e-23
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-20
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-15
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	4e-39
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-37
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	5e-33
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	6e-31
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-26
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	9e-22
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-18
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-14
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	5e-05
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-37
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-33
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-33
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	4e-27
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	7e-26
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-20
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-08
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-37
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	3e-35
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	9e-33
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-27
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-26
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	3e-21
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	3e-21
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	6e-16
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	4e-13
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	4e-35
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	4e-31
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	6e-30
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	1e-29
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	3e-24
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	4e-19
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	8e-16
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-13
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-34
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	3e-31
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	6e-29
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	3e-28
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-21
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	5e-20
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-19
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	5e-19
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	5e-16
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	8e-34
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	3e-30
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	6e-29
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-23
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	4e-17
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	4e-15
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	4e-14
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	1e-04
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-33
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-32
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	4e-31
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	4e-30
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	4e-25
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	4e-19
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-15
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-11
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	5e-33
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-29
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	5e-29
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-26
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-25
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	3e-24
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	5e-19
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	8e-17
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-14
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	3e-14
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	6e-06
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	6e-33
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-32
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-31
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-30
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-25
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-24
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-22
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-20
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-32
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	6e-29
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	6e-28
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	4e-26
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-24
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-18
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	4e-15
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-32
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	6e-29
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	4e-28
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	5e-26
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	7e-25
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-22
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	1e-19
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	5e-16
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	6e-32
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	8e-28
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	4e-27
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	7e-26
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	1e-24
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	7e-18
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	3e-12
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	9e-12
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	1e-10
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-05
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-31
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	3e-29
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	5e-26
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-25
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-20
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	4e-20
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	3e-14
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	8e-11
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-09
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	4e-31
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-30
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-27
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-27
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	6e-20
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	7e-14
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-12
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-11
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	5e-31
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	6e-31
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	3e-28
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-27
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	6e-27
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	4e-24
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	4e-18
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	6e-11
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	4e-07
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	7e-31
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	9e-29
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-27
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	3e-27
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	6e-26
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	6e-24
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	4e-22
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-15
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-06
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	5e-06
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-30
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	7e-30
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	9e-30
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-29
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	7e-27
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	8e-26
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	6e-19
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-12
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-07
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	4e-30
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-25
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-23
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	3e-23
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-19
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-16
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	3e-13
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	5e-09
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	9e-08
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-29
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	8e-24
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	4e-21
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-20
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	7e-19
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-18
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	8e-18
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-14
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	5e-29
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	6e-26
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	6e-25
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	9e-18
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	6e-15
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	9e-12
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	3e-11
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-10
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	5e-29
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	8e-27
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	5e-26
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	7e-26
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-22
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-20
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-04
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	7e-29
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-28
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	3e-24
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	9e-22
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-18
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	5e-15
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	5e-13
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-07
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-06
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	3e-28
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	9e-28
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-23
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-23
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-23
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	4e-23
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	5e-23
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-13
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	5e-11
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	7e-27
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-26
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	4e-26
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	3e-18
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	3e-13
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-12
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-12
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	7e-27
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-26
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-26
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	3e-26
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-20
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	3e-16
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	8e-10
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-26
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	3e-24
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	3e-24
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-23
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	9e-19
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-16
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	4e-14
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-12
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	9e-05
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	5e-26
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-20
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-19
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	4e-19
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	3e-15
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	7e-15
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	1e-12
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	4e-25
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-23
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-22
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-22
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	5e-22
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-16
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-12
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	5e-12
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	7e-10
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-07
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	6e-04
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-24
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	7e-23
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	8e-23
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	5e-22
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-21
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-19
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	3e-13
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	9e-11
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-05
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-24
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-24
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-20
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-19
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-16
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	4e-07
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	3e-24
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	2e-23
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	4e-23
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	8e-21
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	1e-20
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	2e-16
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	8e-16
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	8e-16
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	1e-09
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	2e-06
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	5e-24
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	8e-24
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	1e-22
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	7e-22
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	8e-21
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	1e-20
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-17
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	3e-16
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-10
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	7e-24
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	7e-24
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	2e-19
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	3e-19
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	1e-18
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	5e-15
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	8e-11
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	8e-11
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	3e-10
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	8e-07
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	7e-24
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-23
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	3e-22
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-18
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	3e-18
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-16
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	4e-09
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-07
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	7e-24
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	3e-23
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	6e-21
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	6e-19
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-16
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	9e-16
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-05
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-23
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	7e-22
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	1e-21
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	1e-20
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	3e-17
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	7e-14
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	7e-14
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	5e-13
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	4e-09
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-08
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	2e-23
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	1e-21
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	4e-19
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	2e-17
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	5e-17
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	2e-15
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	1e-11
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	1e-11
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	2e-09
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	8e-07
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	2e-23
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	1e-21
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	1e-19
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	2e-18
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	7e-18
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	1e-15
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	5e-12
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	5e-12
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	3e-10
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	2e-07
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	4e-23
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	7e-23
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	2e-20
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	1e-18
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	3e-18
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	4e-13
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	1e-12
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	1e-12
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	3e-10
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	7e-08
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	6e-23
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	4e-22
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-20
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-20
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-19
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-19
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-16
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-15
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-05
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	1e-22
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	5e-21
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	6e-21
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	3e-19
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	3e-16
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	2e-14
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	8e-14
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	8e-14
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	3e-08
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	3e-08
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	2e-22
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-21
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	2e-19
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	6e-19
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	2e-16
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	3e-15
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	3e-12
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	3e-12
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	2e-08
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-06
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-22
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	1e-21
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	7e-19
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-17
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-17
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	9e-14
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	4e-11
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	4e-11
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	4e-09
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	7e-07
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-21
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-21
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-21
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	6e-21
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-20
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-16
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-12
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-12
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-21
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-20
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	8e-16
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-15
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-15
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	4e-07
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-21
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	5e-20
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	6e-19
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	1e-18
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	4e-17
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	4e-14
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	1e-13
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	1e-13
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-08
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	3e-07
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-20
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	2e-17
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	2e-17
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-15
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	4e-12
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	5e-12
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	7e-12
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	3e-11
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	4e-20
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-18
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	5e-17
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	7e-17
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	1e-14
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	1e-14
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	1e-14
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-11
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	8e-10
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	6e-07
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	6e-20
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	7e-20
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	4e-19
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	1e-18
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	5e-17
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	2e-11
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	2e-11
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	1e-10
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	2e-08
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	1e-05
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	1e-19
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	5e-19
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	2e-18
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	2e-18
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	5e-16
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	1e-12
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	1e-12
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	1e-12
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	3e-08
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	6e-08
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-19
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-19
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-18
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	3e-18
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-16
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-12
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-12
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	5e-11
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	3e-08
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-07
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	1e-19
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	4e-19
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-17
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	3e-17
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	3e-15
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	3e-15
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	5e-14
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	1e-10
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-10
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	7e-07
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-19
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	1e-17
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	4e-16
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-12
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	6e-05
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	7e-04
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	1e-18
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-18
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-15
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	5e-14
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	4e-13
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	8e-12
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-07
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-07
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	1e-04
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-18
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	2e-17
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	4e-17
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	4e-16
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	5e-15
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-14
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	2e-14
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-13
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	2e-18
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	2e-18
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	5e-17
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	1e-16
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	7e-14
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	1e-13
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	1e-10
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	1e-10
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	2e-08
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	3e-07
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	3e-18
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	7e-16
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	1e-14
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	2e-14
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	4e-14
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	8e-09
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	8e-08
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	4e-07
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	4e-07
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	3e-05
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	3e-18
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	4e-16
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	6e-14
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	6e-10
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	6e-09
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	3e-04
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	4e-04
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	6e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-18
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-18
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-18
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-17
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	4e-18
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	4e-17
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	1e-14
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	1e-11
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-11
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	5e-09
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	5e-09
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	5e-08
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-04
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	5e-18
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-16
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-13
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-12
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-11
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-09
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-09
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-08
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	7e-04
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	1e-17
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	5e-16
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	6e-16
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	2e-15
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	6e-14
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	6e-14
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	5e-13
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	6e-10
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	5e-09
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	2e-06
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	1e-17
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-15
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	1e-13
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	6e-12
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-11
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	5e-10
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	5e-10
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	7e-10
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-17
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-17
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	8e-13
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	5e-12
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	4e-11
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-07
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-07
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	3e-06
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	1e-17
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	6e-17
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	4e-16
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	3e-10
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	2e-05
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	2e-04
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	2e-04
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	8e-04
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	3e-17
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	2e-16
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	2e-12
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	2e-11
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	2e-10
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	1e-07
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	2e-07
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	2e-07
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	3e-17
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	8e-15
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	9e-14
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	7e-12
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	2e-11
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	2e-10
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	1e-09
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	1e-09
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	1e-04
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	9e-17
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	2e-14
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	4e-13
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	4e-11
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	9e-10
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	3e-08
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	1e-06
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	1e-06
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-16
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-16
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-15
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	4e-12
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	7e-11
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-10
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-09
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-09
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	8e-04
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-16
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-16
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	6e-16
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-15
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	9e-15
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	3e-14
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	3e-14
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	6e-13
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-10
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-08
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	2e-16
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	2e-14
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	6e-13
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-12
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	3e-11
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	5e-11
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-07
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-07
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	5e-05
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	8e-04
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-16
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-15
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	4e-15
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-13
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-12
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	6e-11
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-10
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-06
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	3e-16
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	6e-15
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	2e-14
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	2e-12
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	2e-11
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	3e-06
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	2e-05
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	5e-04
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	5e-04
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	5e-04
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	3e-16
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	8e-15
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	2e-14
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	5e-11
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	1e-10
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	2e-07
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	3e-07
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	3e-07
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	4e-16
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	3e-15
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	3e-14
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-10
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-10
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	3e-09
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	5e-08
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	3e-06
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	3e-06
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	3e-05
2ens_A	96	Advanced glycosylation END product-specific recept	7e-16
2ens_A	96	Advanced glycosylation END product-specific recept	4e-14
2ens_A	96	Advanced glycosylation END product-specific recept	9e-14
2ens_A	96	Advanced glycosylation END product-specific recept	3e-11
2ens_A	96	Advanced glycosylation END product-specific recept	3e-11
2ens_A	96	Advanced glycosylation END product-specific recept	2e-07
2ens_A	96	Advanced glycosylation END product-specific recept	2e-07
2ens_A	96	Advanced glycosylation END product-specific recept	2e-07
2ens_A	96	Advanced glycosylation END product-specific recept	3e-06
2ens_A	96	Advanced glycosylation END product-specific recept	5e-05
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	1e-15
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	7e-12
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	1e-09
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	6e-08
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	1e-15
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	1e-14
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	6e-14
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-11
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	1e-10
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	4e-08
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	5e-08
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	5e-08
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	1e-15
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	4e-14
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	8e-14
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	7e-13
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	7e-13
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	4e-11
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	9e-07
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	9e-07
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	2e-04
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	1e-15
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	3e-12
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	5e-12
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	9e-12
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	9e-12
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-10
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	1e-06
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	2e-15
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	3e-15
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	4e-14
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	2e-13
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	1e-10
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	2e-08
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	3e-07
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	3e-07
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	2e-15
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	3e-15
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	2e-14
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	1e-11
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	2e-09
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	5e-09
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	7e-08
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	7e-08
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-15
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-14
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	6e-11
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	1e-07
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-06
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	8e-06
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	2e-15
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	3e-15
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	4e-15
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	2e-12
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	2e-11
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	3e-09
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	5e-09
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	5e-09
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	3e-04
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	4e-15
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	5e-14
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-13
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	7e-13
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-12
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	5e-11
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	7e-08
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-04
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	7e-15
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	3e-14
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	9e-13
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	1e-11
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	1e-10
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	1e-08
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	3e-07
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	3e-07
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	8e-04
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	9e-15
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	9e-14
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	1e-11
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	4e-11
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	8e-11
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	8e-06
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	8e-06
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	8e-06
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	1e-05
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-05
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-14
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-13
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	5e-12
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	4e-10
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	5e-10
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	2e-08
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	2e-08
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	6e-08
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	1e-14
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	5e-14
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	2e-12
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	3e-12
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	2e-10
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	1e-08
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	1e-08
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	3e-08
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	5e-04
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-14
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-14
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	4e-13
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-10
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-08
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	4e-08
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	9e-08
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	9e-08
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-04
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	4e-04
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	2e-14
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	2e-12
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	3e-12
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	7e-12
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	5e-09
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	1e-06
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	8e-06
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	2e-14
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	5e-14
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	9e-13
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	9e-10
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	1e-08
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	6e-08
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	6e-08
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	2e-07
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	3e-14
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	3e-13
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-11
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-10
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-09
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	3e-06
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	4e-05
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	4e-05
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	4e-14
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-12
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-12
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	4e-11
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	5e-11
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	9e-10
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	9e-10
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	9e-08
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-07
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	6e-04
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	7e-14
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	2e-08
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	2e-08
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	1e-07
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	9e-14
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	3e-13
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	2e-11
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	5e-11
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	1e-07
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	1e-05
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	7e-05
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	7e-05
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	7e-04
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	9e-14
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	2e-12
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	2e-12
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	1e-09
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	2e-09
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	7e-07
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	3e-05
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	3e-05
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	1e-13
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	1e-12
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	4e-10
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	2e-09
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	1e-08
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	4e-06
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	1e-05
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-13
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	6e-12
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	6e-12
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	2e-11
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	9e-11
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	6e-10
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	3e-09
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	5e-09
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	2e-04
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	2e-13
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	4e-10
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	4e-09
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	5e-05
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	2e-13
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	1e-12
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	1e-11
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	7e-11
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	7e-11
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	2e-09
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	4e-08
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	4e-08
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	1e-07
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	2e-04
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-13
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-12
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-11
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-10
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	4e-10
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	4e-07
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-05
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-05
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-04
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	3e-13
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	1e-12
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	5e-11
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	9e-08
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	6e-07
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	6e-05
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	1e-04
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-12
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	4e-11
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	5e-11
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	7e-10
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	4e-09
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-08
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-04
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	4e-12
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	5e-11
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	1e-10
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	7e-10
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	8e-10
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-08
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	1e-05
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	1e-05
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	1e-05
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	5e-12
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	5e-08
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	7e-06
1he7_A	126	High affinity nerve growth factor receptor; transf	6e-12
1he7_A	126	High affinity nerve growth factor receptor; transf	1e-11
1he7_A	126	High affinity nerve growth factor receptor; transf	9e-10
1he7_A	126	High affinity nerve growth factor receptor; transf	6e-09
1he7_A	126	High affinity nerve growth factor receptor; transf	5e-08
1he7_A	126	High affinity nerve growth factor receptor; transf	1e-05
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	6e-12
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	6e-06
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	1e-05
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	4e-04
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	1e-11
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	1e-11
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-09
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	1e-07
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	3e-06
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	4e-04
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	6e-04
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	2e-11
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	1e-10
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	7e-10
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	1e-09
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	2e-05
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	2e-04
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	2e-11
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	7e-11
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	2e-10
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	1e-09
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	1e-04
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	3e-11
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	4e-11
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	7e-11
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	7e-11
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	2e-10
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	1e-09
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	3e-08
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	6e-07
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	9e-07
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	5e-11
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	1e-10
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	2e-10
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	6e-10
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	6e-10
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	5e-08
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	3e-06
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	2e-05
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	1e-04
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	6e-11
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	5e-10
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-08
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	1e-06
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	1e-06
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	4e-06
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-05
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	3e-05
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-04
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	9e-11
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	3e-06
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	7e-06
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	1e-09
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	1e-09
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	2e-09
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	5e-06
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	1e-05
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	5e-05
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	4e-04
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	2e-09
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	5e-05
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	6e-04
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	2e-09
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	4e-09
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	4e-09
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	4e-09
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	9e-09
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	2e-08
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	7e-08
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	3e-06
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	9e-06
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	6e-09
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	2e-06
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	1e-04
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	2e-08
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	3e-08
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	2e-07
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	3e-06
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	4e-08
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	2e-07
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	2e-07
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	3e-06
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	2e-04
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	5e-08
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	2e-06
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	2e-05
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	4e-05
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	5e-05
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	1e-04
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	7e-08
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	3e-07
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	3e-07
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	8e-06
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	1e-07
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-04
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	4e-07
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-04
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	1e-06
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	2e-05
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	1e-06
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	3e-06
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	3e-06
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	3e-06
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	4e-05
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	6e-05
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	2e-04
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	5e-04
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	8e-04
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	3e-06
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	3e-06
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	3e-04
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	3e-06
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	3e-04
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	4e-06
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	6e-06
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	2e-05
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	3e-05
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	3e-05
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	5e-05
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	5e-05
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	6e-05
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	7e-04
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	7e-05
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	7e-05
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	2e-04
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	3e-04
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	4e-04
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	6e-04
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	6e-04
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	7e-04

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  386 bits (993), Expect = e-122
 Identities = 143/614 (23%), Positives = 240/614 (39%), Gaps = 87/614 (14%)

Query: 348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
           + P FI  L  +   +G    L  ++    EI+I WY+   KL     Y+ Q   N   +
Sbjct: 4   EPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL 63

Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSL 466
            ++ V   D G +TC AEN+VG    S  L +   K    P F ++L+ +    G  V+ 
Sbjct: 64  VINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKL--PPSFARKLKDVHETLGFPVAF 121

Query: 467 ECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPK---------DPSSLGTYTCEAVNCMG 517
           EC++ G    Q+ WYKD + +K       +             D S +G Y C A N +G
Sbjct: 122 ECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLG 181

Query: 518 AAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVP 577
            A S++++                  L      P F  +  +V   +G S   +C V   
Sbjct: 182 TASSSAKLT-----------------LSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGT 224

Query: 578 PWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFS 637
                I W      +     Y +        ++ +  +   D G++ C A++ +G    S
Sbjct: 225 API-KITWAKDNREIRPGGNYKMTLVE-NTATLTVLKVTKGDAGQYTCYASNVAGKDSCS 282

Query: 638 AAYVHVLMPKNYRKPRFVESLKAVMT--DDGLVSFECKVVGFPTPTLQWFKDNEELKPGD 695
            A + V        PRF++ L+       D    +ECK+ G P   + W+KD  E++   
Sbjct: 283 -AQLGV-----QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESS 336

Query: 696 VYQLT---GTSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLL 742
            ++++     + L          G Y C A N  G A SST L +++             
Sbjct: 337 KFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE------------- 383

Query: 743 LTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETL 802
                 P F +     +     +     ++  +P  +VSW +D +++      KI+ E  
Sbjct: 384 -----PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSEN- 437

Query: 803 GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEG 861
            +  + I  ++ AD  E++C A+ND G       + L  P     P+F+++L  +    G
Sbjct: 438 FLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAP-----PRFVKKLSDISTVVG 492

Query: 862 GAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCE 911
             V L+  + G    ++ WFKD  E+     +  IS  +    L          G YTC+
Sbjct: 493 EEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQ 552

Query: 912 AHNCMGTTSSSAAL 925
             N  GT    A L
Sbjct: 553 IKNEAGTQECFATL 566

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  323 bits (830), Expect = 5e-99
 Identities = 132/623 (21%), Positives = 241/623 (38%), Gaps = 83/623 (13%)

Query: 134 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 193
           + P FI  L  +   +G    L          +C+ D    I  ++  +         ++
Sbjct: 4   EPPYFIEPLEHVEAAIGEPITL----------QCKVDGTPEIRIAWYKEHTKLRSAPAYK 53

Query: 194 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIA 253
              ++    L I +V   D G Y+  A N  G   +   L ++ +    P+F R+L D+ 
Sbjct: 54  MQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKER-KLPPSFARKLKDVH 112

Query: 254 VKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRT-ELNI 312
             +G        I     ++  +  +              +  +     +       L I
Sbjct: 113 ETLGFPVAFECRINGSEPLQVSWYKDG-----------ELLKDDANLQTSFIHNVATLQI 161

Query: 313 RRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVE 372
            +  +   G+Y+ +ASN  G +++  +L++       P F  +   + + +G        
Sbjct: 162 LQTDQSHVGQYNCSASNPLGTASSSAKLTLSEH-EVPPFFDLKPVSVDLALGESGTFKCH 220

Query: 373 IRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSH 432
           +     IKI W +++R++     Y+     N   + +  V+  D+G++TC A N  G+  
Sbjct: 221 VTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDS 280

Query: 433 CSCELSVLVPKAYKAPFFTKELE--AILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAG 490
           CS +L V  P     P F K+LE   I+ +      ECK+ G P  +++WYKD  +I+  
Sbjct: 281 CSAQLGVQEP-----PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQES 335

Query: 491 DIFALTANPKD---------PSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPF 541
             F ++                  G YTCEA N  G+A S++ +  +             
Sbjct: 336 SKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK------------- 382

Query: 542 NSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIM 601
                    P+F K+   V+   G    LEC++   P    + W+  +  + +  KY IM
Sbjct: 383 -------EPPVFRKKPHPVETLKGADVHLECELQGTPPF-QVSWHKDKRELRSGKKYKIM 434

Query: 602 ADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAV 661
           ++     SI I  +++ D GE++C A++  G        + +  P     PRFV+ L  +
Sbjct: 435 SEN-FLTSIHILNVDSADIGEYQCKASNDVGSDTCVG-SITLKAP-----PRFVKKLSDI 487

Query: 662 MTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGD----VYQLTGTSSL----------G 706
            T  G  V  +  + G    ++ WFKD  E+        +      ++L          G
Sbjct: 488 STVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAG 547

Query: 707 SYCCVAKNVMGKAESSTQLTIED 729
            Y C  KN  G  E    L++ +
Sbjct: 548 KYTCQIKNEAGTQECFATLSVLE 570

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  308 bits (791), Expect = 2e-93
 Identities = 129/543 (23%), Positives = 236/543 (43%), Gaps = 88/543 (16%)

Query: 444 AYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPK-- 500
           A + P+F + LE +    G  ++L+CKV G P  ++ WYK++ K+++   + +       
Sbjct: 2   AMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVA 61

Query: 501 -------DPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIF 553
                  D S +G YTC+A N +GA  S++ +                  +      P F
Sbjct: 62  SLVINKVDHSDVGEYTCKAENSVGAVASSAVL-----------------VIKERKLPPSF 104

Query: 554 IKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEIN 613
            +++++V   +G     EC++        + WY    +++               +++I 
Sbjct: 105 ARKLKDVHETLGFPVAFECRINGSEPL-QVSWYKDGELLKDDANLQTSFIHNVA-TLQIL 162

Query: 614 YLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-LVSFEC 672
             +    G++ C A++  G    S+A + +   ++   P F     +V    G   +F+C
Sbjct: 163 QTDQSHVGQYNCSASNPLGTAS-SSAKLTLS--EHEVPPFFDLKPVSVDLALGESGTFKC 219

Query: 673 KVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL----------GSYCCVAKNVMGKA 719
            V G     + W KDN E++PG  Y++T    T++L          G Y C A NV GK 
Sbjct: 220 HVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKD 279

Query: 720 ESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQ-ATVNEEFKFTVQVSISPEP 778
             S QL ++                  + P+FI+ L+  +    +E  ++  ++  SPE 
Sbjct: 280 SCSAQLGVQ------------------EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEI 321

Query: 779 KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
           KV W++D+ ++ ES   ++      V  L+++ L V D  ++ C A N  G + +S  LK
Sbjct: 322 KVLWYKDETEIQESSKFRMSFVE-SVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLK 380

Query: 839 LNVPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIIS 897
           +  P     P F ++   V   +G  V+LEC++ G P   + W KD REL++G  +KI+S
Sbjct: 381 VKEP-----PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMS 435

Query: 898 GEDGTCCL----------GIYTCEAHNCMGTTSSSAALL-----GFEDKSQIEKAEEGKK 942
            E+    +          G Y C+A N +G+ +   ++       F  K        G++
Sbjct: 436 -ENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEE 494

Query: 943 ALI 945
             +
Sbjct: 495 VQL 497

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  287 bits (736), Expect = 1e-85
 Identities = 115/577 (19%), Positives = 232/577 (40%), Gaps = 70/577 (12%)

Query: 82  GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR 141
              ++   ++    L I +V   D G Y+  A N  G   +   L ++ +    P+F R+
Sbjct: 49  APAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKER-KLPPSFARK 107

Query: 142 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRT 201
           L D+   +G        I     ++  +  +              +  +     +     
Sbjct: 108 LKDVHETLGFPVAFECRINGSEPLQVSWYKDG-----------ELLKDDANLQTSFIHNV 156

Query: 202 -ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRA 260
             L I +  +   G+Y+ +ASN  G +++  +L++       P F  +   + + +G   
Sbjct: 157 ATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEH-EVPPFFDLKPVSVDLALGESG 215

Query: 261 RLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDG 320
                       KC       I  ++         G  ++    +    L + +V + D 
Sbjct: 216 TF----------KCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDA 265

Query: 321 GRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD-IAVKVGTRARLLVEIRSPTEI 379
           G+Y+  ASN +G  +   +L V+      P FI++L     VK     R   +I    EI
Sbjct: 266 GQYTCYASNVAGKDSCSAQLGVQE----PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEI 321

Query: 380 KIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
           K+ WY+++ +++E+  +R     +   +++ ++S+ DSG +TC A NA G +  S  L V
Sbjct: 322 KVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV 381

Query: 440 LVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTAN 498
             P     P F K+   + T +G  V LEC++ G P  Q+ W+KD +++++G  + + + 
Sbjct: 382 KEP-----PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSE 436

Query: 499 PKDPSSL----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPG 548
               +S+          G Y C+A N +G+      +  +                    
Sbjct: 437 -NFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKA------------------- 476

Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMADGLGG 607
             P F+K++ ++   +G    L+  +       S+ W+ +K  +V  SD   I       
Sbjct: 477 -PPRFVKKLSDISTVVGEEVQLQATIEGAEPI-SVAWFKDKGEIVRESDNIWISYSENIA 534

Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL 644
            +++ +  E  + G++ C   + +G ++   A + VL
Sbjct: 535 -TLQFSRAEPANAGKYTCQIKNEAGTQE-CFATLSVL 569

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  284 bits (727), Expect = 2e-84
 Identities = 114/572 (19%), Positives = 215/572 (37%), Gaps = 82/572 (14%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPK---------DPSSLGTYTCEAVNCMGAAFST 52
           G P  ++ WYK++ K+++   + +              D S +G YTC+A N +GA  S+
Sbjct: 31  GTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASS 90

Query: 53  SRVIARGQQSFLD------------NDDVPFN-RAQG-----------DHPIFGNRFRAI 88
           + ++ + ++                   V F  R  G              +  +     
Sbjct: 91  AVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQT 150

Query: 89  NRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAV 147
           +       L I +  +   G+Y+ +ASN  G +++  +L++       P F  +   + +
Sbjct: 151 SFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEH-EVPPFFDLKPVSVDL 209

Query: 148 KVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRR 207
            +G               KC       I  ++         G  ++    +    L + +
Sbjct: 210 ALGESGTF----------KCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLK 259

Query: 208 VRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD-IAVKVGTRARLLVEI 266
           V + D G+Y+  ASN +G  +   +L V+      P FI++L     VK     R   +I
Sbjct: 260 VTKGDAGQYTCYASNVAGKDSCSAQLGVQE----PPRFIKKLEPSRIVKQDEHTRYECKI 315

Query: 267 RSPTEIKCQFDLNNTIPFSFRAQGDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSV 325
               EIK  +  +              I   ++FR    +    L +  +  +D G Y+ 
Sbjct: 316 GGSPEIKVLWYKDE-----------TEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTC 364

Query: 326 TASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYR 385
            A N +G +++   L V+      P F ++ H +    G    L  E++     ++ W++
Sbjct: 365 EAHNAAGSASSSTSLKVKE----PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHK 420

Query: 386 NDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAY 445
           + R+L   K Y+   +     I + +V   D G + C A N VG   C   +++  P   
Sbjct: 421 DKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAP--- 477

Query: 446 KAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSS 504
             P F K+L  I T  G  V L+  + G     + W+KD  +I         +  ++ ++
Sbjct: 478 --PRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIAT 535

Query: 505 L----------GTYTCEAVNCMGAAFSTSRVI 526
           L          G YTC+  N  G     + + 
Sbjct: 536 LQFSRAEPANAGKYTCQIKNEAGTQECFATLS 567

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  229 bits (586), Expect = 5e-65
 Identities = 99/479 (20%), Positives = 181/479 (37%), Gaps = 76/479 (15%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPK---------DPSSLGTYTCEAVNCMGAAFST 52
           G    Q+ WYKD + +K       +             D S +G Y C A N +G A S+
Sbjct: 127 GSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSS 186

Query: 53  SRVIARGQ------------QSFLDNDDVPFN-RAQG-----------DHPIF-GNRFRA 87
           +++                       +   F     G           +  I  G  ++ 
Sbjct: 187 AKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKM 246

Query: 88  INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD-IA 146
              +    L + +V + D G+Y+  ASN +G  +   +L V+      P FI++L     
Sbjct: 247 TLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE----PPRFIKKLEPSRI 302

Query: 147 VKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF-GNRFRAINRDGRTELNI 205
           VK     R   +I    EIK  +  +              I   ++FR    +    L +
Sbjct: 303 VKQDEHTRYECKIGGSPEIKVLWYKDE-----------TEIQESSKFRMSFVESVAVLEM 351

Query: 206 RRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVE 265
             +  +D G Y+  A N +G +++   L V+      P F ++ H +    G    L  E
Sbjct: 352 YNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE----PPVFRKKPHPVETLKGADVHLECE 407

Query: 266 IR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGR 322
           ++ +P  ++    D                +  G +++ ++ +  T ++I  V   D G 
Sbjct: 408 LQGTPPFQVSWHKD-------------KRELRSGKKYKIMSENFLTSIHILNVDSADIGE 454

Query: 323 YSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIH 382
           Y   ASN+ G  T    ++++      P F+++L DI+  VG   +L   I     I + 
Sbjct: 455 YQCKASNDVGSDTCVGSITLK----APPRFVKKLSDISTVVGEEVQLQATIEGAEPISVA 510

Query: 383 WYRNDRKL-EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
           W+++  ++  E+      +  N   +  S     ++G++TC  +N  G   C   LSVL
Sbjct: 511 WFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  373 bits (959), Expect = e-114
 Identities = 164/888 (18%), Positives = 278/888 (31%), Gaps = 139/888 (15%)

Query: 96  LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD-IAVKVGTRAR 154
           +N+   R      ++  A    G  T         Q    P F++   + I     T A 
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKG--PVFLKEPTNRIDFSNSTGAE 58

Query: 155 LLVEIRSPTEIKCQFDLNNTIPFS-FRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDG 213
           +          +C+   N        R+ G         R I+ DG+  L     R +D 
Sbjct: 59  I----------ECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK--LVFPPFRAEDY 106

Query: 214 ------GRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR 267
                   Y+  A N+ G   ++    V  +   A  +   ++   V  G  A +   I 
Sbjct: 107 RQEVHAQVYACLARNQFGSIISR---DVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIP 163

Query: 268 S-----PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRR-DDGG 321
           S        +    D                 +  ++  +   G  EL+IR V   D   
Sbjct: 164 SFVADFVEVVSWHTD-------EEENYFPGAEYDGKYL-VLPSG--ELHIREVGPEDGYK 213

Query: 322 RYSVTASNESG-----YSTAKFELSVESQVPDAPAFI--RRLHDIAVKVGTRARLLVEIR 374
            Y     +         +T    +  E      P  +   +         +   LL   +
Sbjct: 214 SYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQ 273

Query: 375 SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL--SSVSLFDSGRWTCLAENAVGRSH 432
                   WY+        +              L      + DSG++ C+  N+VG   
Sbjct: 274 GYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGES 333

Query: 433 CSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGD 491
               L+V  P          +      + G      C+  G P   + W KD K I   +
Sbjct: 334 VETVLTVTAP-----LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE 388

Query: 492 IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAP 551
              L          G Y C   N   +A +++ +                  L      P
Sbjct: 389 -SVLRIESVKKEDKGMYQCFVRNDRESAEASAELK-----------------LGGRFDPP 430

Query: 552 IFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHI----MADGLGG 607
           +  +  +    + G S  L+C     P P  I W      +  +D+Y +      +G   
Sbjct: 431 VIRQAFQEETMEPGPSVFLKCVAGGNPTP-EISWELDGKKIANNDRYQVGQYVTVNGDVV 489

Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGL 667
             + I  + A D G +KC+A S  GV +  +A ++V        P   +  K  +     
Sbjct: 490 SYLNITSVHANDGGLYKCIAKSKVGVAE-HSAKLNVYGL-----PYIRQMEKKAIVAGET 543

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL-----------GSYCCVAKNVM 716
           +   C V G+P  ++ W +DN  L      ++    +L            +Y CVAKN  
Sbjct: 544 LIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQE 603

Query: 717 GKAES-STQLTIEDIRNHLSEEDKLLLLTNNKAPKFIE-GLKSCQATVNEEFKFTVQVSI 774
           G +   S ++ +                     P+ I    +   A V +       V  
Sbjct: 604 GYSARGSLEVQVMV------------------LPRIIPFAFEEGPAQVGQYLTLHCSVPG 645

Query: 775 SPEP-KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT 833
              P  + W  D Q + E   +   +       L I A+E +    + C A N  G    
Sbjct: 646 GDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQF 705

Query: 834 SCFLKLNVPKHYKKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDI 892
           +  L + VP     P+++ E      ++G    +ECK  G P+P + W K   +      
Sbjct: 706 TTPLNVYVP-----PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYK 760

Query: 893 HKIISG----EDGTCCL----------GIYTCEAHNCMGTTSSSAALL 926
               S     E+GT  L          G Y CEA N +G+  S+  ++
Sbjct: 761 DLKKSDNIRVEEGT--LHVDNIQKTNEGYYLCEAINGIGSGLSAVIMI 806

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  329 bits (845), Expect = 1e-98
 Identities = 143/892 (16%), Positives = 267/892 (29%), Gaps = 173/892 (19%)

Query: 36  GTYTCEAVNCMGAAFSTSRVIARGQQ------------SFLDNDDVPFN-RAQGD-HPIF 81
             +   A+   G+    +      Q+             F ++       +A G+  P  
Sbjct: 12  MLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEI 71

Query: 82  ------------GNRFRAINRDGRTELNIRRVRRDDG------GRYSVTASNESGYSTAK 123
                           R I+ DG+  L     R +D         Y+  A N+ G   ++
Sbjct: 72  IWIRSDGTAVGDVPGLRQISSDGK--LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISR 129

Query: 124 FELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS-----PTEIKCQFDLNNTIPFS 178
               V  +   A  +   ++   V  G  A +   I S        +    D        
Sbjct: 130 ---DVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTD-------E 179

Query: 179 FRAQGDHPIFGNRFRAINRDGRTELNIRRVRR-DDGGRYSVTASNESG-----YSTAKFE 232
                    +  ++  +   G  EL+IR V   D    Y     +         +T    
Sbjct: 180 EENYFPGAEYDGKYL-VLPSG--ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRL 236

Query: 233 LSVESQVPDAPAFI--RRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG 290
           +  E      P  +   +         +   L           C         F +    
Sbjct: 237 VITEPISSAVPKVVSLAKFDMKTYSGSSTMAL----------LCPAQGYPVPVFRWYKFI 286

Query: 291 DHPIFGNRFRAINR--DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 348
           +           +R       L I+    +D G+Y    +N  G  + +  L+V +    
Sbjct: 287 EGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA---- 342

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
             +         V  G  A    +        + W ++ + +  +       +       
Sbjct: 343 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-------ESVLRI-- 393

Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLE 467
             SV   D G + C   N    +  S EL +     +  P   +  +    E G +V L+
Sbjct: 394 -ESVKKEDKGMYQCFVRNDRESAEASAELKLGG--RFDPPVIRQAFQEETMEPGPSVFLK 450

Query: 468 CKVMGIPTPQLIWYKDNKKIKAGDIFAL----TANPKDPSSL----------GTYTCEAV 513
           C   G PTP++ W  D KKI   D + +    T N    S L          G Y C A 
Sbjct: 451 CVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAK 510

Query: 514 NCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQ 573
           + +G A  ++++   G                 P     +I+++E      G + I+ C 
Sbjct: 511 SKVGVAEHSAKLNVYG----------------LP-----YIRQMEKKAIVAGETLIVTCP 549

Query: 574 VLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDD-GEWKCVATSSSG 632
           V   P   SI W      +  + K  +  +G    ++ I  +E   D   + CVA +  G
Sbjct: 550 VAGYPID-SIVWERDNRALPINRKQKVFPNG----TLIIENVERNSDQATYTCVAKNQEG 604

Query: 633 VKQFSAAYVHVLMPKNYRKPRFVESLKAVMT--DDGLVSFECKVVGFPTP-TLQWFKDNE 689
                +  V V++      PR +              ++  C V G   P  + W  D +
Sbjct: 605 YSARGSLEVQVMVL-----PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQ 659

Query: 690 ELKPGDVYQLT----GTSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLS 735
            +        +      S L          G++ C A+N+ G  + +T L +        
Sbjct: 660 AISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYV------ 713

Query: 736 EEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNV 795
                        P++I            + K   +    P+P+V+W +           
Sbjct: 714 ------------PPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKD 761

Query: 796 KILKETLGV--CHLKIHALEVADQAEWKCIATNDFGQSITSC-FLKLNVPKH 844
               + + V    L +  ++  ++  + C A N  G  +++   + +    H
Sbjct: 762 LKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHHH 813

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  299 bits (768), Expect = 9e-88
 Identities = 149/817 (18%), Positives = 253/817 (30%), Gaps = 165/817 (20%)

Query: 2   GIPTPQLIWYKDNKKIKA-----------GDIFALTANPKDPSSL---GTYTCEAVNCMG 47
           G P P++IW + +                G +       +D         Y C A N  G
Sbjct: 65  GNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFG 124

Query: 48  AAFSTS---RVIARGQ-------QSFLDNDDVPFN----RAQGDHPI--------FGNRF 85
           +  S     R +           +  +  +             D             N F
Sbjct: 125 SIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYF 184

Query: 86  RAINRDGRT------ELNIRRVRR-DDGGRYSVTASNESG-----YSTAKFELSVESQVP 133
                DG+       EL+IR V   D    Y     +         +T    +  E    
Sbjct: 185 PGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISS 244

Query: 134 DAPAFI--RRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNR 191
             P  +   +         +   L           C         F +    +       
Sbjct: 245 AVPKVVSLAKFDMKTYSGSSTMAL----------LCPAQGYPVPVFRWYKFIEGTTRKQA 294

Query: 192 FRAINR--DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRL 249
               +R       L I+    +D G+Y    +N  G  + +  L+V +      +     
Sbjct: 295 VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA----PLSAKIDP 350

Query: 250 HDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPI-----FGNRFRAINR 304
               V  G  A             CQ              G +PI       +  +AI  
Sbjct: 351 PTQTVDFGRPAVF----------TCQ------------YTG-NPIKTVSWMKDG-KAIGH 386

Query: 305 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVG 364
                L I  V+++D G Y     N+   + A  EL +  +    P   +   +  ++ G
Sbjct: 387 SESV-LRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFD-PPVIRQAFQEETMEPG 444

Query: 365 TRARLLVEIRSPTEIKIHWYRNDRKLEENKIYR-----TQHDGNFYFIDLSSVSLFDSGR 419
               L          +I W  + +K+  N  Y+     T +     +++++SV   D G 
Sbjct: 445 PSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGL 504

Query: 420 WTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLI 479
           + C+A++ VG +  S +L+V        P+  +  +  +    T+ + C V G P   ++
Sbjct: 505 YKCIAKSKVGVAEHSAKLNVYGL-----PYIRQMEKKAIVAGETLIVTCPVAGYPIDSIV 559

Query: 480 WYKDNKKIKAGDIFALTA-------NPKDPSSLGTYTCEAVNCMGAAFSTS---RVIARG 529
           W +DN+ +       +         N +  S   TYTC A N  G +   S   +V+   
Sbjct: 560 WERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMV-- 617

Query: 530 QQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKE 589
                                 I     E   A++G    L C V     P +I W   +
Sbjct: 618 -------------------LPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWT-LD 657

Query: 590 GV-VEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKN 648
           G  +           G  G  + I  +EA   G + C A + +G +QF+   ++V +P  
Sbjct: 658 GQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFT-TPLNVYVP-- 714

Query: 649 YRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGT----- 702
              PR++          G     ECK  GFP P + W K   +  PG+   L  +     
Sbjct: 715 ---PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDT-PGEYKDLKKSDNIRV 770

Query: 703 --SSL----------GSYCCVAKNVMGKAESSTQLTI 727
              +L          G Y C A N +G   S+  +  
Sbjct: 771 EEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMIS 807

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  279 bits (716), Expect = 1e-80
 Identities = 125/717 (17%), Positives = 227/717 (31%), Gaps = 144/717 (20%)

Query: 2   GIPTPQLIWYKDNKKIKA--------------GDIFALTANPKDPSSLGTYTCEAVNCMG 47
                 + W+ D ++                 G++      P+D     +Y C   + + 
Sbjct: 167 ADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPED--GYKSYQCRTKHRLT 224

Query: 48  AAFSTSRVIAR--------------------GQQSFLDNDDVPFN-RAQGD--------- 77
                S    R                      +++  +  +     AQG          
Sbjct: 225 GETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYK 284

Query: 78  --HPIFGNRFRAIN---RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV 132
                   +   +N   +     L I+    +D G+Y    +N  G  + +  L+V +  
Sbjct: 285 FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA-- 342

Query: 133 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPI----- 187
               +         V  G  A             CQ              G +PI     
Sbjct: 343 --PLSAKIDPPTQTVDFGRPAVF----------TCQ------------YTG-NPIKTVSW 377

Query: 188 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 247
             +  +AI       L I  V+++D G Y     N+   + A  EL +  +    P   +
Sbjct: 378 MKDG-KAIGHSESV-LRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFD-PPVIRQ 434

Query: 248 RLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRD 305
              +  ++ G    L      +PT EI  + D    I  + R          ++  +N D
Sbjct: 435 AFQEETMEPGPSVFLKCVAGGNPTPEISWELD-GKKIANNDR------YQVGQYVTVNGD 487

Query: 306 GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGT 365
             + LNI  V  +DGG Y   A ++ G +    +L+V         +IR++   A+  G 
Sbjct: 488 VVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYG-----LPYIRQMEKKAIVAGE 542

Query: 366 RARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAE 425
              +   +       I W R++R L  N+  +   +G     ++   S  D   +TC+A+
Sbjct: 543 TLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNS--DQATYTCVAK 600

Query: 426 NAVGRS-HCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLI-WYK 482
           N  G S   S E+ V+V             E    + G  ++L C V G   P  I W  
Sbjct: 601 NQEGYSARGSLEVQVMVL----PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTL 656

Query: 483 DNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTSRVIARGQQS 532
           D + I        +   +  S L          G +TC A N  G    T+ +       
Sbjct: 657 DGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY---- 712

Query: 533 FLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVV 592
                             P +I E  +     G+ A +EC+    P P  + W  K    
Sbjct: 713 ----------------VPPRWILEPTDKAFAQGSDAKVECKADGFPKP-QVTWK-KAVGD 754

Query: 593 EASDKYHIMADG---LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
              +   +       +   ++ ++ ++  ++G + C A +  G    +   + V   
Sbjct: 755 TPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAH 811

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  308 bits (791), Expect = 2e-91
 Identities = 123/820 (15%), Positives = 216/820 (26%), Gaps = 152/820 (18%)

Query: 105 DGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTE 164
               +    +  +        L +       P    +   + +K  T  ++    +   +
Sbjct: 8   AVALWLCVETRAASVGLPSVSLDL-------PRLSIQKDILTIKANTTLQITCRGQRDLD 60

Query: 165 IKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGR--TELNIRRVRRDDGGRYSVTASN 222
                                            DG     L I +V  +D G Y      
Sbjct: 61  W-------------LWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRE 107

Query: 223 ESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTI 282
               S     + V  Q   +P          V   T             I C   ++N  
Sbjct: 108 TDLAS----VIYVYVQDYRSPFIASVSDQHGVVYIT-----ENKNKTVVIPCLGSISNLN 158

Query: 283 PFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
                   +     +  R I+ D +    I        G     A        +   + V
Sbjct: 159 VSLCARYPEKRFVPDGNR-ISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVV 217

Query: 343 ESQVPDAPAFIRRLHDIAVKVGTRARL--LVEIRSPTEIKIHWYRNDRKLEENKI----Y 396
                     +   H I + VG +  L           I  +W     K +  K+     
Sbjct: 218 VVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDL 277

Query: 397 RTQHDGNFYFID----LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTK 452
           +TQ             +  V+  D G +TC A + +     S  + V         F + 
Sbjct: 278 KTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP--FVAFGSG 335

Query: 453 ELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDI----FALTANPKDPSSLGT 507
               +    G  V +  K +G P P++ WYK+   +++         LT         G 
Sbjct: 336 MESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGN 395

Query: 508 YTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTS 567
           YT    N +     +  V             VP     P       I  V++ +   GT+
Sbjct: 396 YTVILTNPISKEKQSHVVSLVVY--------VP-----PQIGEKSLISPVDSYQY--GTT 440

Query: 568 AILECQVLVPPWPRSIYWY--------------------------------NKEGVVEAS 595
             L C V   P P  I+WY                                     +E +
Sbjct: 441 QTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVN 500

Query: 596 DKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFV 655
                + +G       +    A     +KC A +  G  +      HV        P   
Sbjct: 501 KNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVI-SFHVTRG-----PEIT 554

Query: 656 ESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT--------------- 700
                  T+   VS  C         L W+K   +  P  V +L                
Sbjct: 555 LQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNA 614

Query: 701 --------GTSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLL 742
                       +          G Y C+A++   K        +               
Sbjct: 615 TMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLT-------------- 660

Query: 743 LTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETL 802
           +    AP     L++   ++ E  + +   S +P P++ WF+D++ +VE   + +     
Sbjct: 661 VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN- 719

Query: 803 GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
              +L I  +   D+  + C A +  G +    F  +   
Sbjct: 720 --RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 757

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  302 bits (775), Expect = 4e-89
 Identities = 113/834 (13%), Positives = 217/834 (26%), Gaps = 177/834 (21%)

Query: 212 DGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTE 271
               +    +  +        L +       P    +   + +K  T  ++    +   +
Sbjct: 8   AVALWLCVETRAASVGLPSVSLDL-------PRLSIQKDILTIKANTTLQITCRGQRDLD 60

Query: 272 IKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGR--TELNIRRVRRDDGGRYSVTASN 329
                                            DG     L I +V  +D G Y      
Sbjct: 61  W-------------LWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRE 107

Query: 330 ESGYSTAKFELSVESQVPDAPAFIRRLH-DIAVKVGTRARL--LVEIRSPTEIKIHWYRN 386
               S     +        A    +     I         +  L  I +        Y  
Sbjct: 108 TDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPE 167

Query: 387 DRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYK 446
            R + +           F    + S  +  +G   C A+           + V+V     
Sbjct: 168 KRFVPDGNRISWDSKKGFT---IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIY 224

Query: 447 APFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL- 505
               +      L+    + L C         + +  +    K      +  + K  S   
Sbjct: 225 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSE 284

Query: 506 ------------------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPP 547
                             G YTC A + +    +++ V                  +   
Sbjct: 285 MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR-----------------VHEK 327

Query: 548 GPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLG 606
                       V+A +G    +  + L  P P  I WY K G+ +E++           
Sbjct: 328 PFVAFGSGMESLVEATVGERVRIPAKYLGYPPP-EIKWY-KNGIPLESNHTIKA------ 379

Query: 607 GYSIEINYLEAVDDGEWKCVATSSSG-VKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDD 665
           G+ + I  +   D G +  + T+     KQ     + V +P    +   +  + +     
Sbjct: 380 GHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGT 439

Query: 666 GLVSFECKVVGFPTP-TLQWFKDNEELKPGDVYQLTGTSSL------------------- 705
              +  C V   P P  + W+   EE    +  Q    ++                    
Sbjct: 440 T-QTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIE 498

Query: 706 ---------------------------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEED 738
                                        Y C A N +G+ E      +           
Sbjct: 499 VNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHV----------- 547

Query: 739 KLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVV-------- 790
                        I      Q T  E          S    ++W++   Q +        
Sbjct: 548 --------TRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELP 599

Query: 791 -----------ESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL 839
                      + +       T  +  +++    + DQ ++ C+A +   +       +L
Sbjct: 600 TPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQL 659

Query: 840 NVPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISG 898
            V +    P     L+    S G ++ + C   G P P + WFKD   L       +   
Sbjct: 660 TVLERVA-PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL--- 715

Query: 899 EDGTCCL----------GIYTCEAHNCMGTTSSSAALL--GFEDKSQIEKAEEG 940
           +DG   L          G+YTC+A + +G     A  +  G ++K+ +E+    
Sbjct: 716 KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLERTHHH 769

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  287 bits (736), Expect = 8e-84
 Identities = 127/793 (16%), Positives = 210/793 (26%), Gaps = 137/793 (17%)

Query: 32  PSSLGTYTCEAVNCMGAAFSTSR------VIARGQQSFLDNDDVPFNRAQGDHPI----F 81
             ++  + C           +         I +   +   N  +     +G   +     
Sbjct: 6   LLAVALWLCVETRAASVGLPSVSLDLPRLSIQKDILTIKANTTLQI-TCRGQRDLDWLWP 64

Query: 82  GNRFRAINRDGRTE---------LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV 132
            N+  +  R   TE         L I +V  +D G Y          S     + V  Q 
Sbjct: 65  NNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLAS----VIYVYVQD 120

Query: 133 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
             +P          V   T             I C   ++N          +     +  
Sbjct: 121 YRSPFIASVSDQHGVVYIT-----ENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGN 175

Query: 193 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDI 252
           R I+ D +    I        G     A        +   + V          +   H I
Sbjct: 176 R-ISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGI 234

Query: 253 AVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNI 312
            + VG +  L    R+   +   F+           +  +     +  +  +   + L I
Sbjct: 235 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTI 294

Query: 313 RRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVE 372
             V R D G Y+  AS+          + V  + P           +   VG R R+  +
Sbjct: 295 DGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK-PFVAFGSGMESLVEATVGERVRIPAK 353

Query: 373 IRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSH 432
                  +I WY+N   LE N  +  +         +  VS  D+G +T +  N + +  
Sbjct: 354 YLGYPPPEIKWYKNGIPLESN--HTIKAGHVLT---IMEVSERDTGNYTVILTNPISKEK 408

Query: 433 CSCELSVLV-PKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLI-WYKDNKKIKAG 490
            S  +S++V                      T +L C V  IP P  I WY   ++  A 
Sbjct: 409 QSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECAN 468

Query: 491 DIFALTANPKDPSSL------------------------------------------GTY 508
           +     +                                                    Y
Sbjct: 469 EPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALY 528

Query: 509 TCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSA 568
            CEAVN +G                                    I    +++     S 
Sbjct: 529 KCEAVNKVGRGERVISFHVT---------------------RGPEITLQPDMQPTEQESV 567

Query: 569 ILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGL-------------------GGYS 609
            L C      +  ++ WY             +                            
Sbjct: 568 SLWCTADRSTFE-NLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILI 626

Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSA-AYVHVLMPKNYRKPRFVESLKAVMTDDG-L 667
           +E+      D G++ C+A      K+      + VL       P    +L+   T  G  
Sbjct: 627 MELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERV---APTITGNLENQTTSIGES 683

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT-GTSSL----------GSYCCVAKNVM 716
           +   C   G P P + WFKDNE L       L  G  +L          G Y C A +V+
Sbjct: 684 IEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVL 743

Query: 717 GKAESSTQLTIED 729
           G A+      IE 
Sbjct: 744 GCAKVEAFFIIEG 756

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  253 bits (648), Expect = 9e-72
 Identities = 114/747 (15%), Positives = 184/747 (24%), Gaps = 146/747 (19%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
           G      +W  +    +        ++     +L          G Y C       A+  
Sbjct: 55  GQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVI 114

Query: 52  TSRV--------------IARGQQSFLDNDDVPFN-RAQGDHP--IFGNRF--------- 85
              V                    +   N  V         +       R+         
Sbjct: 115 YVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDG 174

Query: 86  RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDI 145
             I+ D +    I        G     A        +   + V          +   H I
Sbjct: 175 NRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGI 234

Query: 146 AVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNI 205
            + VG +  L    R+   +   F+           +  +     +  +  +   + L I
Sbjct: 235 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTI 294

Query: 206 RRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVE 265
             V R D G Y+  AS+          + V  + P           +   VG R R+  +
Sbjct: 295 DGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK-PFVAFGSGMESLVEATVGERVRIPAK 353

Query: 266 IRS--PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRY 323
                P EIK   +    +  +   +  H                 L I  V   D G Y
Sbjct: 354 YLGYPPPEIKWYKN-GIPLESNHTIKAGH----------------VLTIMEVSERDTGNY 396

Query: 324 SVTASNESGYSTAKFELSVESQV-PDAPAFIRRLHDIAVKVGTRARLLVEIRS-PTEIKI 381
           +V  +N          +S+   V P            + + GT   L   + + P    I
Sbjct: 397 TVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHI 456

Query: 382 HWYRNDRKLEENK---------------------------------IYRTQHDGNFYFID 408
           HWY    +   N+                                  +      N     
Sbjct: 457 HWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVST 516

Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLEC 468
           L   +   S  + C A N VGR        V        P  T + +   TEQ +VSL C
Sbjct: 517 LVIQAANVSALYKCEAVNKVGRGERVISFHVTRG-----PEITLQPDMQPTEQESVSLWC 571

Query: 469 KVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------------------- 505
                    L WYK   +     +  L                                 
Sbjct: 572 TADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKN 631

Query: 506 ------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVEN 559
                 G Y C A +                        V     +    AP     +EN
Sbjct: 632 ASLQDQGDYVCLAQDRKTKKRHC----------------VVRQLTVLERVAPTITGNLEN 675

Query: 560 VKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVD 619
               IG S  + C     P P  I W+     +       +     G  ++ I  +   D
Sbjct: 676 QTTSIGESIEVSCTASGNPPP-QIMWFKDNETLVEDSGIVLKD---GNRNLTIRRVRKED 731

Query: 620 DGEWKCVATSSSGVKQFSAAYVHVLMP 646
           +G + C A S  G  +   A+  +   
Sbjct: 732 EGLYTCQACSVLGCAKVE-AFFIIEGA 757

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  232 bits (593), Expect = 2e-64
 Identities = 82/596 (13%), Positives = 155/596 (26%), Gaps = 130/596 (21%)

Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLE 467
           + S  L     W C+   A      S  L +        P  + + + +  +   T+ + 
Sbjct: 1   MQSKVLLAVALWLCVETRAASVGLPSVSLDL--------PRLSIQKDILTIKANTTLQIT 52

Query: 468 CKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMG 517
           C+  G      +W  +    +        ++     +L          G Y C       
Sbjct: 53  CR--GQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDL 110

Query: 518 AAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVP 577
           A+             ++ +   PF + +      ++I E +        + ++ C   + 
Sbjct: 111 ASVIY---------VYVQDYRSPFIASVSDQHGVVYITENK------NKTVVIPCLGSIS 155

Query: 578 PWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFS 637
               S+     E          I  D   G    I        G   C A  +    Q  
Sbjct: 156 NLNVSLCARYPEKRFVPDGN-RISWDSKKG--FTIPSYMISYAGMVFCEAKINDESYQSI 212

Query: 638 AAYVHVLMPKNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPG-- 694
              V V+  + Y     +     +    G  +   C         + +  +    K    
Sbjct: 213 MYIVVVVGYRIY--DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHK 270

Query: 695 -----------DVYQLTGTSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNH 733
                              S+L          G Y C A + +   ++ST + + +    
Sbjct: 271 KLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE---- 326

Query: 734 LSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESD 793
                                    +ATV E  +   +    P P++ W+++   +  + 
Sbjct: 327 -----------KPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNH 375

Query: 794 NVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV-PKHYKKPKFLE 852
            +K          L I  +   D   +  I TN   +   S  + L V        K L 
Sbjct: 376 TIKA------GHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLI 429

Query: 853 ELKAVLSEGGAVNLECKVIGVPQP-TLKWFKDGRELKAGDIHKIISGEDGTCCL------ 905
                   G    L C V  +P P  + W+    E  A +  + +S  +   C       
Sbjct: 430 SPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVE 489

Query: 906 ------------------------------------GIYTCEAHNCMGTTSSSAAL 925
                                                +Y CEA N +G      + 
Sbjct: 490 DFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISF 545

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  131 bits (331), Expect = 2e-31
 Identities = 44/367 (11%), Positives = 89/367 (24%), Gaps = 68/367 (18%)

Query: 621 GEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPT 679
             W CV T ++ V   S          +   PR       +       +   C+  G   
Sbjct: 10  ALWLCVETRAASVGLPSV---------SLDLPRLSIQKDILTIKANTTLQITCR--GQRD 58

Query: 680 PTLQWFKDNEELKPGDVYQLTG----TSSL----------GSYCCVAKNVMGKAESSTQL 725
               W  +    +               +L          G+Y C  +     +     +
Sbjct: 59  LDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYV 118

Query: 726 TIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRD 785
                         +  +++     +I          N+        SIS        R 
Sbjct: 119 QD-------YRSPFIASVSDQHGVVYIT------ENKNKTVVIPCLGSISNLNVSLCARY 165

Query: 786 DQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHY 845
            ++    D  +I           I +  ++      C A  +     +  ++ + V    
Sbjct: 166 PEKRFVPDGNRI--SWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRI 223

Query: 846 KKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIIS-------- 897
                       LS G  + L C         + +  +    K      +          
Sbjct: 224 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 283

Query: 898 -GEDGTCCL----------GIYTCEAHNCMGTTSSSAAL--------LGFEDKSQIEKAE 938
             +     L          G+YTC A + + T  +S  +                + +A 
Sbjct: 284 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEAT 343

Query: 939 EGKKALI 945
            G++  I
Sbjct: 344 VGERVRI 350

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  123 bits (310), Expect = 6e-29
 Identities = 52/434 (11%), Positives = 92/434 (21%), Gaps = 97/434 (22%)

Query: 2   GIPTPQLIWYKDNKKIKAGDI----FALTANPKDPSSLGTYTCEAVNCMGAAFSTSRV-- 55
           G P P++ WYK+   +++         LT         G YT    N +     +  V  
Sbjct: 356 GYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSL 415

Query: 56  -------------------IARGQQSFLD----------------NDDVPFNRAQGDHPI 80
                                 G    L                   +            
Sbjct: 416 VVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVS 475

Query: 81  FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYST------------------- 121
             N +         +         +  ++++        ST                   
Sbjct: 476 VTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNK 535

Query: 122 -----AKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS--PTEIKCQFDLNNT 174
                      V          I    D+         L           +         
Sbjct: 536 VGRGERVISFHVT-----RGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQP 590

Query: 175 IPFSFRAQ-------GDHPIFGNRFRAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGY 226
           +P              D     N     N       + ++     D G Y   A +    
Sbjct: 591 LPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTK 650

Query: 227 STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS--PTEIKCQFDLNNTIPF 284
                   +      AP     L +    +G    +        P +I    D       
Sbjct: 651 KRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKD------- 703

Query: 285 SFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
                 +  +  +    +    R  L IRRVR++D G Y+  A +  G +  +    +E 
Sbjct: 704 ------NETLVEDSGIVLKDGNRN-LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 756

Query: 345 QVPDAPAFIRRLHD 358
              +     R  H 
Sbjct: 757 -AQEKTNLERTHHH 769

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  289 bits (740), Expect = 2e-85
 Identities = 106/710 (14%), Positives = 198/710 (27%), Gaps = 90/710 (12%)

Query: 232 ELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEI-----KCQFDLNNTIPFSF 286
           +L++ES   +            V  G    LLV             K +    N     +
Sbjct: 1   KLTIESTPFN------------VAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGY 48

Query: 287 RAQGDHPIFGNRF---RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
                    G  +     I  +    L I+ + ++D G Y++           +      
Sbjct: 49  VIGTQQATPGPAYSGREIIYPNA--SLLIQNIIQNDTGFYTLHVIKSDL-VNEEATGQFR 105

Query: 344 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGN 403
                    I   +   V+         E  +  +    W+ N++ L  +   +  +   
Sbjct: 106 VYPELPKPSISSNNSKPVEDKDAVAFTCEPETQ-DATYLWWVNNQSLPVSPRLQLSNGNR 164

Query: 404 FYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG- 462
              +   +V+  D+  + C  +N V     S  + + V   Y     T          G 
Sbjct: 165 TLTL--FNVTRNDTASYKCETQNPVSARR-SDSVILNV--LYGPDAPTISPLNTSYRSGE 219

Query: 463 TVSLECKVMGIPTPQLIWYKDNKKIK-AGDIFALTANPKDPSSLGTYTCEAVNCMGAAFS 521
            ++L C     P  Q  W+ +    +   ++F       +    G+YTC+A N       
Sbjct: 220 NLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNITVNN---SGSYTCQAHNSDTGLNR 276

Query: 522 TSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPR 581
           T                      +   P   FI    +   +   +  L C+  +     
Sbjct: 277 T----------------TVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTT- 319

Query: 582 SIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYV 641
              W+     +  S +  +  D     ++ +  +   D G ++C   +   V       +
Sbjct: 320 -YLWWVNNQSLPVSPRLQLSNDN---RTLTLLSVTRNDVGPYECGIQNELSVDHSDPVIL 375

Query: 642 HVLMPKNYRKPRFVESLKAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT 700
           +VL    Y       S        G+ +S  C     P     W  D    +      ++
Sbjct: 376 NVL----YGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELFIS 431

Query: 701 GTSSL--GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSC 758
             +    G Y C A N       +T  TI                        I    S 
Sbjct: 432 NITEKNSGLYTCQANNSASGHSRTTVKTITVSAE--------------LPKPSISSNNSK 477

Query: 759 QATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQA 818
                +   FT +          W+ + Q +  S  +++         L +  +   D  
Sbjct: 478 PVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLPVSPRLQLSNGN---RTLTLFNVTRNDAR 533

Query: 819 EWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVPQPT 877
            + C   N    +  S  + L+V   Y     +          G  +NL C     P P 
Sbjct: 534 AYVCGIQNSVS-ANRSDPVTLDV--LYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQ 590

Query: 878 LKWFKDGRELKAGDIHKI--ISGEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
             W  +G   +   +  I  I+  +     G Y C   N     ++S   
Sbjct: 591 YSWRINGIPQQHTQVLFIAKITPNNN----GTYACFVSNLATGRNNSIVK 636

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  263 bits (673), Expect = 3e-76
 Identities = 108/750 (14%), Positives = 202/750 (26%), Gaps = 141/750 (18%)

Query: 125 ELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEI-----KCQFDLNNTIPFSF 179
           +L++ES   +            V  G    LLV             K +    N     +
Sbjct: 1   KLTIESTPFN------------VAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGY 48

Query: 180 RAQGDHPIFGNRF---RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
                    G  +     I  +    L I+ + ++D G Y++           +      
Sbjct: 49  VIGTQQATPGPAYSGREIIYPNA--SLLIQNIIQNDTGFYTLHVIKSDL-VNEEATGQFR 105

Query: 237 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKCQFDLNNTIPFSFRAQGDHPIF 295
                    I   +   V+         E            + N ++P S R Q      
Sbjct: 106 VYPELPKPSISSNNSKPVEDKDAVAFTCEPETQDATYLWWVN-NQSLPVSPRLQ------ 158

Query: 296 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR 355
                 ++   RT L +  V R+D   Y     N      +    SV   V   P     
Sbjct: 159 ------LSNGNRT-LTLFNVTRNDTASYKCETQNPVSARRSD---SVILNVLYGPDAPTI 208

Query: 356 -LHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSL 414
              + + + G    L     S    +  W+ N    +             +     ++++
Sbjct: 209 SPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQST--------QELFI---PNITV 257

Query: 415 FDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIP 474
            +SG +TC A N+    + +   ++ V      PF T      + ++  V+L C+     
Sbjct: 258 NNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQN 317

Query: 475 TPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTSR 524
           T   +W+ +N+ +       L     D  +L          G Y C   N +    S   
Sbjct: 318 TTY-LWWVNNQSLPVSPRLQL---SNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPV 373

Query: 525 VIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVL-VPPWPRSI 583
           ++               N L  P               + G +  L C     PP     
Sbjct: 374 IL---------------NVLYGP---DDPTISPSYTYYRPGVNLSLSCHAASNPP-A-QY 413

Query: 584 YWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
            W   +G ++   +            + I+ +   + G + C A +S+     +     +
Sbjct: 414 SWL-IDGNIQQHTQ-----------ELFISNITEKNSGLYTCQANNSASGHSRTT-VKTI 460

Query: 644 LMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTS 703
            +     KP    +    + D   V+F C+     T  L W           +    G  
Sbjct: 461 TVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNR 520

Query: 704 SL----------GSYCCVAKNVMGKAESST-QLTIEDIRNHLSEEDKLLLLTNNKAPKFI 752
           +L           +Y C  +N +    S    L +                        I
Sbjct: 521 TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLY-----------------GPDTPI 563

Query: 753 EGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHAL 812
                           +   + +P P+ SW  +      +              L I  +
Sbjct: 564 ISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQ------------VLFIAKI 611

Query: 813 EVADQAEWKCIATNDFGQSITSCFLKLNVP 842
              +   + C  +N       S    + V 
Sbjct: 612 TPNNNGTYACFVSNLATGRNNSIVKSITVS 641

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  230 bits (588), Expect = 1e-64
 Identities = 89/636 (13%), Positives = 163/636 (25%), Gaps = 131/636 (20%)

Query: 339 ELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI--- 395
           +L++ES   +            V  G    LLV           WY+ +R     +I   
Sbjct: 1   KLTIESTPFN------------VAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGY 48

Query: 396 ----------------YRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
                                + +       ++   D+G +T     +   +        
Sbjct: 49  VIGTQQATPGPAYSGREIIYPNASLLI---QNIIQNDTGFYTLHVIKSDLVNE-EATGQF 104

Query: 440 LVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTAN- 498
            V      P  +      + ++  V+  C+         +W+ +N+ +       L+   
Sbjct: 105 RVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGN 163

Query: 499 ------PKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPI 552
                     +   +Y CE  N + A  S S                    L        
Sbjct: 164 RTLTLFNVTRNDTASYKCETQNPVSARRSDSV------------------ILNVLYGPDA 205

Query: 553 FIKEVENVKAKIGTSAILECQVLVPPWPR-SIYWYNKEGVVEASDKYHIMADGLGGYSIE 611
                 N   + G +  L C       P     W+   G  + S +            + 
Sbjct: 206 PTISPLNTSYRSGENLNLSCHA--ASNPPAQYSWF-VNGTFQQSTQ-----------ELF 251

Query: 612 INYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFE 671
           I  +   + G + C A +S      +     + +     KP    +    + D+  V+  
Sbjct: 252 IPNITVNNSGSYTCQAHNSDTGLNRTTV-TTITVYAEPPKPFITSNNSNPVEDEDAVALT 310

Query: 672 CKVVGFPTPTLQWFKDNEELKPGDVYQL-TGTSSL----------GSYCCVAKNVMGKAE 720
           C+     T  L W+ +N+ L      QL     +L          G Y C  +N +    
Sbjct: 311 CEPEIQNTTYL-WWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDH 369

Query: 721 SSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKV 780
           S   +                L                          +   + +P  + 
Sbjct: 370 SDPVI----------------LNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQY 413

Query: 781 SWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLN 840
           SW  D      +              L I  +   +   + C A N       +    + 
Sbjct: 414 SWLIDGNIQQHTQ------------ELFISNITEKNSGLYTCQANNSASGHSRTTVKTIT 461

Query: 841 VPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGED 900
           V     KP         + +  AV   C+       T  W+ +G+ L        +S  +
Sbjct: 462 VSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQN-TTYLWWVNGQSLPVSP-RLQLSNGN 519

Query: 901 GTCCL----------GIYTCEAHNCMGTTSSSAALL 926
            T  L            Y C   N +    S    L
Sbjct: 520 RT--LTLFNVTRNDARAYVCGIQNSVSANRSDPVTL 553

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  220 bits (562), Expect = 3e-61
 Identities = 97/703 (13%), Positives = 182/703 (25%), Gaps = 148/703 (21%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL-------------------------G 36
                   WYK  +      I       +  +                           G
Sbjct: 25  PQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDTG 84

Query: 37  TYTCEAVNCMGAAFSTSR------------VIARGQQSFLDNDDVPFN-RAQG------- 76
            YT   +         +             + +   +   D D V F    +        
Sbjct: 85  FYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQDATYLW 144

Query: 77  ---DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP 133
              +  +  +    ++   RT L +  V R+D   Y     N      +    SV   V 
Sbjct: 145 WVNNQSLPVSPRLQLSNGNRT-LTLFNVTRNDTASYKCETQNPVSARRSD---SVILNVL 200

Query: 134 DAPAFIRR-LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
             P        + + + G    L           C    N    +S+   G         
Sbjct: 201 YGPDAPTISPLNTSYRSGENLNL----------SCHAASNPPAQYSWFVNG--------- 241

Query: 193 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDI 252
                     L I  +  ++ G Y+  A N           ++         FI   +  
Sbjct: 242 TFQQSTQE--LFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSN 299

Query: 253 AVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNI 312
            V+      L           C+ ++ NT  + +           R + ++ D RT L +
Sbjct: 300 PVEDEDAVAL----------TCEPEIQNT-TYLWWVNNQSLPVSPRLQ-LSNDNRT-LTL 346

Query: 313 RRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR-RLHDIAVKVGTRARLLV 371
             V R+D G Y     NE     +     V   V   P            + G    L  
Sbjct: 347 LSVTRNDVGPYECGIQNELSVDHSD---PVILNVLYGPDDPTISPSYTYYRPGVNLSLSC 403

Query: 372 EIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS 431
              S    +  W  +    +  +              +S+++  +SG +TC A N+    
Sbjct: 404 HAASNPPAQYSWLIDGNIQQHTQELF-----------ISNITEKNSGLYTCQANNSASGH 452

Query: 432 HCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD 491
             +   ++ V      P  +      + ++  V+  C+     T   +W+ + + +    
Sbjct: 453 SRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLPVSP 511

Query: 492 IFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPF 541
              L        +L            Y C   N + A  S                 V  
Sbjct: 512 RLQL---SNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDP---------------VTL 553

Query: 542 NSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIM 601
           + L  P      I    +     G +  L C     P P    W    G+ +   +    
Sbjct: 554 DVLYGP---DTPIISPPDSSYLSGANLNLSCHSASNPSP-QYSWR-INGIPQQHTQ---- 604

Query: 602 ADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSA-AYVHV 643
                   + I  +   ++G + C  ++ +  +  S    + V
Sbjct: 605 -------VLFIAKITPNNNGTYACFVSNLATGRNNSIVKSITV 640

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  177 bits (449), Expect = 2e-46
 Identities = 69/476 (14%), Positives = 126/476 (26%), Gaps = 98/476 (20%)

Query: 2   GIPTPQLIWYKDNKKIK-AGDIFALTANPKDPSSLGTYTCEAVNCMGAA----------- 49
             P  Q  W+ +    +   ++F       +    G+YTC+A N                
Sbjct: 229 SNPPAQYSWFVNGTFQQSTQELFIPNITVNN---SGSYTCQAHNSDTGLNRTTVTTITVY 285

Query: 50  ---------FSTSRVIARGQQSFL----DNDDVPFNRAQGDHPIFGNRFRAINRDGRTEL 96
                     + S  +       L    +  +  +     +  +  +    ++ D RT L
Sbjct: 286 AEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRT-L 344

Query: 97  NIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR-RLHDIAVKVGTRARL 155
            +  V R+D G Y     NE     +     V   V   P            + G    L
Sbjct: 345 TLLSVTRNDVGPYECGIQNELSVDHSD---PVILNVLYGPDDPTISPSYTYYRPGVNLSL 401

Query: 156 LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAIN--RDGRT-----ELNIRRV 208
                      C             A  + P         +   DG       EL I  +
Sbjct: 402 ----------SCH------------AASNPPA------QYSWLIDGNIQQHTQELFISNI 433

Query: 209 RRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR- 267
              + G Y+  A+N +   +     ++          I   +   V+         E   
Sbjct: 434 TEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEA 493

Query: 268 SPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTA 327
             T      +   ++P S            R +  N +    L +  V R+D   Y    
Sbjct: 494 QNTTYLWWVN-GQSLPVS-----------PRLQLSNGNRT--LTLFNVTRNDARAYVCGI 539

Query: 328 SNESGYSTAK-FELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN 386
            N    + +    L V          I    D +   G    L     S    +  W  N
Sbjct: 540 QNSVSANRSDPVTLDVLYGPD---TPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRIN 596

Query: 387 DRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
               +  ++             ++ ++  ++G + C   N     + S   S+ V 
Sbjct: 597 GIPQQHTQVLF-----------IAKITPNNNGTYACFVSNLATGRNNSIVKSITVS 641

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  225 bits (574), Expect = 4e-65
 Identities = 96/453 (21%), Positives = 177/453 (39%), Gaps = 87/453 (19%)

Query: 424 AENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGI-PTPQLIWY 481
             + +  SH                 F  E    +T +G  V L C        P + W 
Sbjct: 3   WGSELESSHHHHHHGGRRS-----LHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWK 57

Query: 482 KDNKKIKAGD-------------IFALTANPKDPSSLGTYTCEA-VNCMGAAFS-TSRVI 526
           KD   +  G              I  +  +       G Y CEA +   G+  S T++V+
Sbjct: 58  KDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVM 117

Query: 527 ARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY 586
             G                       F+ + E++ A +G + +L+C+V+  P P +I+W 
Sbjct: 118 VAG--------------------PLRFLSQTESITAFMGDTVLLKCEVIGDPMP-TIHWQ 156

Query: 587 NKEGV----VEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVH 642
            K       +    +  ++  G    +++I+ L+  D G ++C A + +  +  + A V 
Sbjct: 157 -KNQQDLNPIPGDSRVVVLPSG----ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVR 211

Query: 643 VLM-PKNYRKPRFVESLKAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKP-GDVYQL 699
           +L  P  +R+  F++    V+  +G     EC V G+P P+  W +  E ++     Y L
Sbjct: 212 ILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSL 271

Query: 700 TGTSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAP 749
            G S+L          G+Y CV         +S +LT+                     P
Sbjct: 272 LGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV------------------PP 313

Query: 750 KFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKI 809
            F+    +  A  + + +F   VS  P P V+W ++   V+ SD  +I+  +    +L+I
Sbjct: 314 WFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGS----NLRI 369

Query: 810 HALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
             +  +D+  ++C+A N+ G + +S  L +  P
Sbjct: 370 LGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP 402

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  219 bits (559), Expect = 4e-63
 Identities = 102/438 (23%), Positives = 155/438 (35%), Gaps = 74/438 (16%)

Query: 327 ASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYR 385
             +E   S              +  F+    D     G    L            I W +
Sbjct: 3   WGSELESSHHHHHHGGRR----SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKK 58

Query: 386 NDRKLEENKIYRTQH--DGNFYF--IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV 441
           +   L      R Q   +G+     I  S     D G + C A      S  S    V+V
Sbjct: 59  DGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMV 118

Query: 442 PKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPK 500
                   F  + E+I    G TV L+C+V+G P P + W K+ + +       +  + +
Sbjct: 119 ---AGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDL-----NPIPGDSR 170

Query: 501 --------------DPSSLGTYTCEAVNCMGAAFSTS---RVIARGQQSFLDNDDVPFNS 543
                          P   G Y C A N            R+++                
Sbjct: 171 VVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLH----------- 219

Query: 544 LMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMA 602
                    F++   NV A  G  A+LEC V   P P S  W   +E +   S KY ++ 
Sbjct: 220 -----RQLYFLQRPSNVIAIEGKDAVLECCVSGYPPP-SFTWLRGEEVIQLRSKKYSLLG 273

Query: 603 DGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVM 662
                 ++ I+ +   D G + CV T  +     SA  + VL+P     P F+     + 
Sbjct: 274 GS----NLLISNVTDDDSGTYTCVVTYKNENISASA-ELTVLVP-----PWFLNHPSNLY 323

Query: 663 TDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCV 711
             +   + FEC V G P PT+ W K+ + + P D +Q+ G S+L          G Y CV
Sbjct: 324 AYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCV 383

Query: 712 AKNVMGKAESSTQLTIED 729
           A+N  G A+SS QL +  
Sbjct: 384 AENEAGNAQSSAQLIVPK 401

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  205 bits (523), Expect = 3e-58
 Identities = 92/408 (22%), Positives = 150/408 (36%), Gaps = 63/408 (15%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVL-VPPWPRSIYWYNKEGV---VEASDKYHIMADG- 604
           +  F+ E  +     G + +L C        P  I W  K+G+   +   D+   + +G 
Sbjct: 21  SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVP-VIKWK-KDGLILALGMDDRKQQLPNGS 78

Query: 605 LGGYSIEINYLEAVDDGEWKCVATSSS-GVKQFSAAYVHVLMPKNYRKPRFVESLKAVMT 663
           L   +I  +     D+G ++C A+    G      A V V  P      RF+   +++  
Sbjct: 79  LLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGP-----LRFLSQTESITA 133

Query: 664 DDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDV---YQLTGTSSL----------GSYC 709
             G  V  +C+V+G P PT+ W K+ ++L P        +  + +L          G Y 
Sbjct: 134 FMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYR 193

Query: 710 CVAKNVMGKAESST-QLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKF 768
           C A+N       +  ++ I                  ++   F++   +  A   ++   
Sbjct: 194 CSARNPASTRTGNEAEVRILS------------DPGLHRQLYFLQRPSNVIAIEGKDAVL 241

Query: 769 TVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDF 828
              VS  P P  +W R ++ +        L   LG  +L I  +   D   + C+ T   
Sbjct: 242 ECCVSGYPPPSFTWLRGEEVIQLRSKKYSL---LGGSNLLISNVTDDDSGTYTCVVTYKN 298

Query: 829 GQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGREL 887
                S  L + VP     P FL     +   E   +  EC V G P PT+ W K+G  +
Sbjct: 299 ENISASAELTVLVP-----PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVV 353

Query: 888 KAGDIHKIISG----------EDGTCCLGIYTCEAHNCMGTTSSSAAL 925
              D  +I+ G           D     G Y C A N  G   SSA L
Sbjct: 354 IPSDYFQIVGGSNLRILGVVKSDE----GFYQCVAENEAGNAQSSAQL 397

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  186 bits (474), Expect = 1e-51
 Identities = 91/437 (20%), Positives = 144/437 (32%), Gaps = 64/437 (14%)

Query: 113 ASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS--PT-EIKCQF 169
             +E   S              +  F+    D     G    L     S      IK + 
Sbjct: 3   WGSELESSHHHHHHGGRR----SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKK 58

Query: 170 DLNNTIPFSFRAQGDHPIFGNRFRAINRDGR---TELNIRRVRRDDGGRYSVTASNESGY 226
           D    +              +  +    +G      +   R  + D G Y   AS     
Sbjct: 59  D-GLILALG----------MDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSG 107

Query: 227 STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLN--NTIPF 284
           S       V    P    F+ +   I   +G    L          KC+   +   TI +
Sbjct: 108 SIISRTAKVMVAGP--LRFLSQTESITAFMGDTVLL----------KCEVIGDPMPTIHW 155

Query: 285 SFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK-FELSVE 343
               Q  +PI G+    +   G   L I R++  D G Y  +A N +   T    E+ + 
Sbjct: 156 QKNQQDLNPIPGDSRVVVLPSG--ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRIL 213

Query: 344 S--QVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLE-ENKIYRTQH 400
           S   +     F++R  ++    G  A L   +         W R +  ++  +K Y    
Sbjct: 214 SDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLG 273

Query: 401 DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTE 460
             N      S+V+  DSG +TC+          S EL+VLVP     P+F      +   
Sbjct: 274 GSNLLI---SNVTDDDSGTYTCVVTYKNENISASAELTVLVP-----PWFLNHPSNLYAY 325

Query: 461 QG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYT 509
           +   +  EC V G P P + W K+   +   D F +       S+L          G Y 
Sbjct: 326 ESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGG----SNLRILGVVKSDEGFYQ 381

Query: 510 CEAVNCMGAAFSTSRVI 526
           C A N  G A S++++I
Sbjct: 382 CVAENEAGNAQSSAQLI 398

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  157 bits (399), Expect = 8e-42
 Identities = 71/356 (19%), Positives = 117/356 (32%), Gaps = 42/356 (11%)

Query: 94  TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRA 153
             +   R  + D G Y   AS     S       V    P    F+ +   I   +G   
Sbjct: 82  QNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGP--LRFLSQTESITAFMGDTV 139

Query: 154 RLLVEIRSPTEIKCQFDLN--NTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRD 211
            L          KC+   +   TI +    Q  +PI G+    +   G   L I R++  
Sbjct: 140 LL----------KCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG--ALQISRLQPG 187

Query: 212 DGGRYSVTASNESGYSTAK-FELSVES--QVPDAPAFIRRLHDIAVKVGTRARLLVEIR- 267
           D G Y  +A N +   T    E+ + S   +     F++R  ++    G  A L   +  
Sbjct: 188 DSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSG 247

Query: 268 SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVT 326
            P                      +  I     +     G   L I  V  DD G Y+  
Sbjct: 248 YPPPSFTWLRG-------------EEVIQLRSKKYSLLGGSN-LLISNVTDDDSGTYTCV 293

Query: 327 ASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN 386
            + ++   +A  EL+V   VP  P F+    ++             +       ++W +N
Sbjct: 294 VTYKNENISASAELTV--LVP--PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKN 349

Query: 387 DRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
              +  +  ++     N        V   D G + C+AEN  G +  S +L V  P
Sbjct: 350 GDVVIPSDYFQIVGGSNLRI---LGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP 402

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  126 bits (318), Expect = 3e-31
 Identities = 74/403 (18%), Positives = 118/403 (29%), Gaps = 104/403 (25%)

Query: 4   PTPQLIWYKDNKKIKAGD-------------IFALTANPKDPSSLGTYTCEA-VNCMGAA 49
             P + W KD   +  G              I  +  +       G Y CEA +   G+ 
Sbjct: 50  GVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSI 109

Query: 50  FS-TSRVIARGQQSFLD---------NDDVPFN-RAQG-----------DHPIF---GNR 84
            S T++V+  G   FL           D V       G              +    G+ 
Sbjct: 110 ISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDS 169

Query: 85  FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK-FELSVES--QVPDAPAFIRR 141
              +   G   L I R++  D G Y  +A N +   T    E+ + S   +     F++R
Sbjct: 170 RVVVLPSG--ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQR 227

Query: 142 LHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDG 199
             ++    G  A L   +   P                      +  I     +     G
Sbjct: 228 PSNVIAIEGKDAVLECCVSGYPPPSFTWLRG-------------EEVIQLRSKKYSLLGG 274

Query: 200 RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTR 259
              L I  V  DD G Y+   + ++   +A  EL+V   VP  P F+    ++       
Sbjct: 275 SN-LLISNVTDDDSGTYTCVVTYKNENISASAELTV--LVP--PWFLNHPSNLYAYESMD 329

Query: 260 ARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD-----------HPIFGNRFRAINRDGRT 308
                        +C               G              +  + +  I      
Sbjct: 330 IEF----------ECA------------VSGKPVPTVNWMKNGDVVIPSDYFQIVGGS-- 365

Query: 309 ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA 351
            L I  V + D G Y   A NE+G + +  +L V       PA
Sbjct: 366 NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP-----KPA 403

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  122 bits (307), Expect = 7e-30
 Identities = 39/211 (18%), Positives = 76/211 (36%), Gaps = 21/211 (9%)

Query: 732 NHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQV-SISPEPKVSWFRDDQQVV 790
           + L            ++  F+                     S    P + W +D   + 
Sbjct: 5   SELESSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILA 64

Query: 791 ESDNVKILKE---TLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKK 847
              + +  +    +L + ++        D+  ++C A+     SI S   K+ V      
Sbjct: 65  LGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMV---AGP 121

Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELK-AGDIHKIISGEDGTCCL 905
            +FL + +++    G  V L+C+VIG P PT+ W K+ ++L       +++    G   L
Sbjct: 122 LRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGA--L 179

Query: 906 ----------GIYTCEAHNCMGTTSSSAALL 926
                     G+Y C A N   T + + A +
Sbjct: 180 QISRLQPGDSGVYRCSARNPASTRTGNEAEV 210

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 94.9 bits (236), Expect = 1e-20
 Identities = 48/296 (16%), Positives = 80/296 (27%), Gaps = 92/296 (31%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPK--------------DPSSLGTYTCEAVNCMG 47
           G P P + W K+ + +       +  + +               P   G Y C A N   
Sbjct: 147 GDPMPTIHWQKNQQDL-----NPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPAS 201

Query: 48  AAFSTS---RVIARGQ-------------QSFLDNDDVPFN-RAQG-----------DHP 79
                    R+++                   ++  D        G           +  
Sbjct: 202 TRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEV 261

Query: 80  IFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFI 139
           I     +     G   L I  V  DD G Y+   + ++   +A  EL+V   VP  P F+
Sbjct: 262 IQLRSKKYSLLGGSN-LLISNVTDDDSGTYTCVVTYKNENISASAELTV--LVP--PWFL 316

Query: 140 RRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD-----------HPIF 188
               ++                    +C               G              + 
Sbjct: 317 NHPSNLYAYESMDIEF----------ECA------------VSGKPVPTVNWMKNGDVVI 354

Query: 189 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA 244
            + +  I       L I  V + D G Y   A NE+G + +  +L V       PA
Sbjct: 355 PSDYFQIVGGS--NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP-----KPA 403

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  213 bits (543), Expect = 2e-62
 Identities = 84/301 (27%), Positives = 139/301 (46%), Gaps = 51/301 (16%)

Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL- 705
            P F     +V    G   +F+C V G     + W KDN E++PG  Y++T    T++L 
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 64

Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLK 756
                    G Y C A NV GK   S QL +                   + P+FI+ L+
Sbjct: 65  VLKVTKGDAGQYTCYASNVAGKDSCSAQLGV------------------QEPPRFIKKLE 106

Query: 757 SCQ-ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVA 815
             +    +E  ++  ++  SPE KV W++D+ ++ ES   ++      V  L+++ L V 
Sbjct: 107 PSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVE-SVAVLEMYNLSVE 165

Query: 816 DQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVP 874
           D  ++ C A N  G + +S  LK+  P     P F ++   V   +G  V+LEC++ G P
Sbjct: 166 DSGDYTCEAHNAAGSASSSTSLKVKEP-----PVFRKKPHPVETLKGADVHLECELQGTP 220

Query: 875 QPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCEAHNCMGTTSSSAA 924
              + W KD REL++G  +KI+S E+    +          G Y C+A N +G+ +   +
Sbjct: 221 PFQVSWHKDKRELRSGKKYKIMS-ENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGS 279

Query: 925 L 925
           +
Sbjct: 280 I 280

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  195 bits (497), Expect = 3e-56
 Identities = 64/303 (21%), Positives = 115/303 (37%), Gaps = 42/303 (13%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
            P F  +  +V   +G S   +C V        I W      +     Y +        +
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVTGTAPI-KITWAKDNREIRPGGNYKMTLVE-NTAT 62

Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMT--DDGL 667
           + +  +   D G++ C A++ +G    SA  + V  P     PRF++ L+       D  
Sbjct: 63  LTVLKVTKGDAGQYTCYASNVAGKDSCSA-QLGVQEP-----PRFIKKLEPSRIVKQDEH 116

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD---VYQLTGTSSL----------GSYCCVAKN 714
             +ECK+ G P   + W+KD  E++      +  +   + L          G Y C A N
Sbjct: 117 TRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176

Query: 715 VMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSI 774
             G A SST L +++                   P F +     +     +     ++  
Sbjct: 177 AAGSASSSTSLKVKE------------------PPVFRKKPHPVETLKGADVHLECELQG 218

Query: 775 SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITS 834
           +P  +VSW +D +++      KI+ E   +  + I  ++ AD  E++C A+ND G     
Sbjct: 219 TPPFQVSWHKDKRELRSGKKYKIMSEN-FLTSIHILNVDSADIGEYQCKASNDVGSYTCV 277

Query: 835 CFL 837
             +
Sbjct: 278 GSI 280

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  185 bits (472), Expect = 9e-53
 Identities = 74/307 (24%), Positives = 132/307 (42%), Gaps = 41/307 (13%)

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
            P F  +   + + +G        +     IKI W +++R++     Y+     N   + 
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 64

Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELE-AILTEQG-TVSL 466
           +  V+  D+G++TC A N  G+  CS +L V  P     P F K+LE + + +Q      
Sbjct: 65  VLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP-----PRFIKKLEPSRIVKQDEHTRY 119

Query: 467 ECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCM 516
           ECK+ G P  +++WYKD  +I+    F ++      + L          G YTCEA N  
Sbjct: 120 ECKIGGSPEIKVLWYKDETEIQESSKFRMSFVE-SVAVLEMYNLSVEDSGDYTCEAHNAA 178

Query: 517 GAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLV 576
           G+A S++ +  +                      P+F K+   V+   G    LEC++  
Sbjct: 179 GSASSSTSLKVK--------------------EPPVFRKKPHPVETLKGADVHLECELQG 218

Query: 577 PPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQF 636
            P    + W+  +  + +  KY IM++     SI I  +++ D GE++C A++  G    
Sbjct: 219 TPPF-QVSWHKDKRELRSGKKYKIMSEN-FLTSIHILNVDSADIGEYQCKASNDVGSYT- 275

Query: 637 SAAYVHV 643
               + +
Sbjct: 276 CVGSITL 282

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  179 bits (456), Expect = 1e-50
 Identities = 71/303 (23%), Positives = 133/303 (43%), Gaps = 38/303 (12%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIRS--PTEIKCQFDLNNTIPFSFRAQGDHPIF-GNR 298
            P F  +   + + +G        +    P +I    D             +  I  G  
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKD-------------NREIRPGGN 51

Query: 299 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 358
           ++    +    L + +V + D G+Y+  ASN +G  +   +L V+      P FI++L  
Sbjct: 52  YKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE----PPRFIKKLEP 107

Query: 359 -IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDS 417
              VK     R   +I    EIK+ WY+++ +++E+  +R     +   +++ ++S+ DS
Sbjct: 108 SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDS 167

Query: 418 GRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTP 476
           G +TC A NA G +  S  L V  P     P F K+   + T +G  V LEC++ G P  
Sbjct: 168 GDYTCEAHNAAGSASSSTSLKVKEP-----PVFRKKPHPVETLKGADVHLECELQGTPPF 222

Query: 477 QLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTSRVI 526
           Q+ W+KD +++++G  + + +     +S+          G Y C+A N +G+      + 
Sbjct: 223 QVSWHKDKRELRSGKKYKIMSE-NFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSIT 281

Query: 527 ARG 529
            + 
Sbjct: 282 LKA 284

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  177 bits (451), Expect = 5e-50
 Identities = 71/309 (22%), Positives = 124/309 (40%), Gaps = 57/309 (18%)

Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL 505
            PFF  +  ++    G + + +C V G    ++ W KDN++I+ G  + +T      ++L
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT-ATL 63

Query: 506 ----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIK 555
                     G YTC A N  G    ++++  +                      P FIK
Sbjct: 64  TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ--------------------EPPRFIK 103

Query: 556 EVENVK-AKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGGYSIEIN 613
           ++E  +  K       EC++   P    + WY K+   ++ S K+ +         +E+ 
Sbjct: 104 KLEPSRIVKQDEHTRYECKIGGSPEI-KVLWY-KDETEIQESSKFRMSFVE-SVAVLEMY 160

Query: 614 YLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-LVSFEC 672
            L   D G++ C A +++G    S+  + V  P     P F +    V T  G  V  EC
Sbjct: 161 NLSVEDSGDYTCEAHNAAGSAS-SSTSLKVKEP-----PVFRKKPHPVETLKGADVHLEC 214

Query: 673 KVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL----------GSYCCVAKNVMGKA 719
           ++ G P   + W KD  EL+ G  Y++      +S+          G Y C A N +G  
Sbjct: 215 ELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSY 274

Query: 720 ESSTQLTIE 728
                +T++
Sbjct: 275 TCVGSITLK 283

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  168 bits (428), Expect = 7e-47
 Identities = 63/312 (20%), Positives = 119/312 (38%), Gaps = 41/312 (13%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRS--PTEIKCQFDLNNTIPFSFRAQGDHPIF-GNR 191
            P F  +   + + +G        +    P +I    D             +  I  G  
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKD-------------NREIRPGGN 51

Query: 192 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 251
           ++    +    L + +V + D G+Y+  ASN +G  +   +L V+      P FI++L  
Sbjct: 52  YKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE----PPRFIKKLEP 107

Query: 252 -IAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNRFRAINRDGR 307
              VK     R   +I  SP  ++    D             +  I   ++FR    +  
Sbjct: 108 SRIVKQDEHTRYECKIGGSPEIKVLWYKD-------------ETEIQESSKFRMSFVESV 154

Query: 308 TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRA 367
             L +  +  +D G Y+  A N +G +++   L V+      P F ++ H +    G   
Sbjct: 155 AVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE----PPVFRKKPHPVETLKGADV 210

Query: 368 RLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA 427
            L  E++     ++ W+++ R+L   K Y+   +     I + +V   D G + C A N 
Sbjct: 211 HLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASND 270

Query: 428 VGRSHCSCELSV 439
           VG   C   +++
Sbjct: 271 VGSYTCVGSITL 282

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  142 bits (359), Expect = 9e-38
 Identities = 55/270 (20%), Positives = 108/270 (40%), Gaps = 41/270 (15%)

Query: 82  GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR 141
           G  ++    +    L + +V + D G+Y+  ASN +G  +   +L V+      P FI++
Sbjct: 49  GGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE----PPRFIKK 104

Query: 142 LHD-IAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNRFRAINR 197
           L     VK     R   +I  SP  ++    D             +  I   ++FR    
Sbjct: 105 LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKD-------------ETEIQESSKFRMSFV 151

Query: 198 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVG 257
           +    L +  +  +D G Y+  A N +G +++   L V+      P F ++ H +    G
Sbjct: 152 ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE----PPVFRKKPHPVETLKG 207

Query: 258 TRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNRFRAINRDGRTELNIRR 314
               L  E++ +P  ++    D                +  G +++ ++ +  T ++I  
Sbjct: 208 ADVHLECELQGTPPFQVSWHKD-------------KRELRSGKKYKIMSENFLTSIHILN 254

Query: 315 VRRDDGGRYSVTASNESGYSTAKFELSVES 344
           V   D G Y   ASN+ G  T    +++++
Sbjct: 255 VDSADIGEYQCKASNDVGSYTCVGSITLKA 284

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  131 bits (330), Expect = 8e-34
 Identities = 49/272 (18%), Positives = 103/272 (37%), Gaps = 54/272 (19%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
           G    ++ W KDN++I+ G  + +T      ++L          G YTC A N  G    
Sbjct: 31  GTAPIKITWAKDNREIRPGGNYKMTLVENT-ATLTVLKVTKGDAGQYTCYASNVAGKDSC 89

Query: 52  TSRVI----------ARGQQSFLDNDDVPFN-RAQG-----------DHPIF-GNRFRAI 88
           ++++               +    ++   +  +  G           +  I   ++FR  
Sbjct: 90  SAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMS 149

Query: 89  NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVK 148
             +    L +  +  +D G Y+  A N +G +++   L V+      P F ++ H +   
Sbjct: 150 FVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE----PPVFRKKPHPVETL 205

Query: 149 VGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNRFRAINRDGRTELNI 205
            G    L  E++ +P  ++    D                +  G +++ ++ +  T ++I
Sbjct: 206 KGADVHLECELQGTPPFQVSWHKD-------------KRELRSGKKYKIMSENFLTSIHI 252

Query: 206 RRVRRDDGGRYSVTASNESGYSTAKFELSVES 237
             V   D G Y   ASN+ G  T    +++++
Sbjct: 253 LNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  214 bits (545), Expect = 6e-60
 Identities = 71/573 (12%), Positives = 146/573 (25%), Gaps = 102/573 (17%)

Query: 315 VRRDDGGRYS----VTASNESGYSTAKFELSVESQV--------PDAPAFIRRLHDIAVK 362
               D            +N+S    +     V            P +   +     + V 
Sbjct: 2   TGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVD 61

Query: 363 VGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTC 422
           V     L V + +P  I   W      L     +  Q+ G    + +  ++   +G +  
Sbjct: 62  VSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMV-ILKMTETQAGEYLL 120

Query: 423 LAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYK 482
             ++          +S+          +T         +   +L C    +P P + W  
Sbjct: 121 FIQSEATNYTILFTVSIRNT-----LLYTLRRPYFRKMENQDALVCISESVPEPIVEWVL 175

Query: 483 DNKKIKAGD-----IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDND 537
            + + ++       +                 C A N +G   +    I           
Sbjct: 176 CDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTI----------- 224

Query: 538 DVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDK 597
                 L            +  +  K+G    + C+ +       + W  +   +E  + 
Sbjct: 225 -----DLNQT-----PQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNY 274

Query: 598 YHIMADGLGGYSIEINYL-----EAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKP 652
           + +         I I +         D G + C ++         +A V ++        
Sbjct: 275 FEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS----QSALVTIVEKGFINAT 330

Query: 653 RFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL------- 705
              E  +    ++    F  +   +P     W    +   P +   L    S+       
Sbjct: 331 NSSEDYEIDQYEE--FCFSVRFKAYPQIRCTWTFSRKSF-PCEQKGLDNGYSISKFCNHK 387

Query: 706 ---GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATV 762
              G Y   A+N   +      L I                   + P+ +          
Sbjct: 388 HQPGEYIFHAENDDAQFTKMFTLNI------------------RRKPQVLA--------E 421

Query: 763 NEEFKFTVQVSISPEPKVSWFRDDQQVVESD--------NVKILKETLG--VCHLKIHAL 812
               + +      P P  +W +   +             N K  ++  G  V    ++  
Sbjct: 422 ASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMS 481

Query: 813 EVADQAEWKCIATNDFGQSITSCFLKLNVPKHY 845
           E       KC A N  G S  +  L    P  +
Sbjct: 482 EAIKGFLVKCCAYNSLGTSCETILLNSPGPFPF 514

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  196 bits (500), Expect = 5e-54
 Identities = 77/570 (13%), Positives = 145/570 (25%), Gaps = 137/570 (24%)

Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECK 469
           +  S+  S  +  ++E+        C L              +     +    +++L+  
Sbjct: 20  NDSSVGKSSSYPMVSESPEDLG---CALRPQSS-----GTVYEAAAVEVDVSASITLQVL 71

Query: 470 VMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAA 519
           V        +W   +  +     F L        S+          G Y     +     
Sbjct: 72  VDAPGNISCLWVFKHSSLNCQPHFDLQNR--GVVSMVILKMTETQAGEYLLFIQSEATNY 129

Query: 520 FSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPW 579
                V  R                       +          K+     L C     P 
Sbjct: 130 TILFTVSIR---------------------NTLLYTLRRPYFRKMENQDALVCISESVPE 168

Query: 580 PRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAA 639
           P  + W   +   E+  +     +       E   L  +   + +C A +  G +     
Sbjct: 169 P-IVEWVLCDSQGESCKE-----ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLF 222

Query: 640 YVHVLMPKNYRKPRFVESLKAVMTDDG-LVSFECKVVG-FPTPTLQWFKDNEELKPGDVY 697
            + +             +L  +    G  +   CK V       L W  +N+ L+ G+ +
Sbjct: 223 TIDL-------NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYF 275

Query: 698 QLTG---------TSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEED 738
           +++                        G Y C +         S  +TI           
Sbjct: 276 EMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSK---HPSQSALVTI----------- 321

Query: 739 KLLLLTNNKAPKFIEGL---KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNV 795
                       FI      +  +    EEF F+V+    P+ + +W    +        
Sbjct: 322 --------VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQ-- 371

Query: 796 KILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK 855
              K       +           E+   A ND  Q      L +        P+ L    
Sbjct: 372 ---KGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRK-----PQVLA--- 420

Query: 856 AVLSEGGAVNLECKVIGVPQPTLKWFK-------DGRELKAGDIHKIISGEDGTCCL--- 905
               E  A    C   G P P+  W K          E+  G  ++  + +     +   
Sbjct: 421 ----EASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSS 476

Query: 906 ----------GIYTCEAHNCMGTTSSSAAL 925
                      +  C A+N +GT+  +  L
Sbjct: 477 TLNMSEAIKGFLVKCCAYNSLGTSCETILL 506

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  190 bits (484), Expect = 6e-52
 Identities = 49/450 (10%), Positives = 110/450 (24%), Gaps = 69/450 (15%)

Query: 502 PSSLGTYTCEAVNCM--GAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVEN 559
              L    C  +N     ++   S           ++ +    +L P       + E   
Sbjct: 4   NQDLPVIKCVLINHKNNDSSVGKSSS----YPMVSESPEDLGCALRPQSSG--TVYEAAA 57

Query: 560 VKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVD 619
           V+  +  S  L+  V  P    S  W  K   +     + +   G+   S+ I  +    
Sbjct: 58  VEVDVSASITLQVLVDAPGNI-SCLWVFKHSSLNCQPHFDLQNRGVV--SMVILKMTETQ 114

Query: 620 DGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPT 679
            GE+     S +         V +          +          +   +  C     P 
Sbjct: 115 AGEYLLFIQSEATNYT-ILFTVSI-----RNTLLYTLRRPYFRKMENQDALVCISESVPE 168

Query: 680 PTLQWFKDNEELKPGDVYQLTGTSSL---------GSYCCVAKNVMGKAESSTQLTIEDI 730
           P ++W   + + +                          C A+N +G+  +         
Sbjct: 169 PIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRL------- 221

Query: 731 RNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVS-ISPEPKVSWFRDDQQV 789
                        T +        L      V E      +   ++    ++W  +++ +
Sbjct: 222 ------------FTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKAL 269

Query: 790 VESDNVKILKETLG-----VCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKH 844
            E +  ++   +       +    + ++   D   + C ++    QS     + +     
Sbjct: 270 EEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSAL---VTIVEKGF 326

Query: 845 YKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIH---------KI 895
                  E+ +    +        +    PQ    W    +                   
Sbjct: 327 INATNSSEDYEID--QYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFC 384

Query: 896 ISGEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
                     G Y   A N     +    L
Sbjct: 385 NHKHQP----GEYIFHAENDDAQFTKMFTL 410

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  177 bits (451), Expect = 1e-47
 Identities = 62/482 (12%), Positives = 123/482 (25%), Gaps = 76/482 (15%)

Query: 77  DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 136
              +       +   G   + I ++     G Y +   +E+   T  F +     + +  
Sbjct: 86  HSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTV----SIRNTL 141

Query: 137 AFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAIN 196
            +  R                       + C  +        +                 
Sbjct: 142 LYTLRRPYFRKMENQ-----------DALVCISESVPEPIVEWVLCDSQGESCKE----E 186

Query: 197 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKV 256
                +   + +    G      A NE G    +        +   P     L  + +KV
Sbjct: 187 SPAVVKKEEKVLHELFGTDIRCCARNELGRECTR---LFTIDLNQTPQT--TLPQLFLKV 241

Query: 257 GTRARLLVEI-RSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRV 315
           G    +  +           ++L N    +        +                 +  V
Sbjct: 242 GEPLWIRCKAVHVNHGFGLTWELENK---ALEEGNYFEMSTYSTNRTMIRILF-AFVSSV 297

Query: 316 RRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH---DIAVKVGTRARLLVE 372
            R+D G Y+ ++S     S     +++         FI   +   D  +         V 
Sbjct: 298 ARNDTGYYTCSSSKHPSQSA---LVTIV-----EKGFINATNSSEDYEIDQYEEFCFSVR 349

Query: 373 IRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSH 432
            ++  +I+  W  + +     +    +   N Y I          G +   AEN   +  
Sbjct: 350 FKAYPQIRCTWTFSRKSFPCEQ----KGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFT 405

Query: 433 CSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKD--------- 483
               L++        P        +L E       C   G P P   W K          
Sbjct: 406 KMFTLNIRRK-----P-------QVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTE 453

Query: 484 -----------NKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQS 532
                      N+K+    + + T N  +        C A N +G +  T  + + G   
Sbjct: 454 EITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPFP 513

Query: 533 FL 534
           F+
Sbjct: 514 FI 515

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  134 bits (339), Expect = 3e-33
 Identities = 56/487 (11%), Positives = 109/487 (22%), Gaps = 95/487 (19%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
                  +W   +  +     F L        S+          G Y     +       
Sbjct: 74  APGNISCLWVFKHSSLNCQPHFDLQNR--GVVSMVILKMTETQAGEYLLFIQSEATNYTI 131

Query: 52  TSRVIARGQQSFLDNDDVPFNRAQGDHPIF-----GN--------------RFRAINRDG 92
              V  R    +      P+ R   +                                  
Sbjct: 132 LFTVSIRNTLLYTLRR--PYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPA 189

Query: 93  RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTR 152
             +   + +    G      A NE G    +        +   P     L  + +KVG  
Sbjct: 190 VVKKEEKVLHELFGTDIRCCARNELGRECTR---LFTIDLNQTPQT--TLPQLFLKVGEP 244

Query: 153 ARLLVEI-RSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRD 211
             +  +           ++L N    +        +                 +  V R+
Sbjct: 245 LWIRCKAVHVNHGFGLTWELENK---ALEEGNYFEMSTYSTNRTMIRILF-AFVSSVARN 300

Query: 212 DGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH---DIAVKVGTRARLLVEIRS 268
           D G Y+ ++S     S     +++         FI   +   D  +         V  ++
Sbjct: 301 DTGYYTCSSSKHPSQSA---LVTIV-----EKGFINATNSSEDYEIDQYEEFCFSVRFKA 352

Query: 269 --PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVT 326
                    F    + P   +                 D    ++     +   G Y   
Sbjct: 353 YPQIRCTWTFS-RKSFPCEQKGL---------------DNGYSISKFCNHKHQPGEYIFH 396

Query: 327 ASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN 386
           A N+    T  F L++  +    P          +   + ++              W + 
Sbjct: 397 AENDDAQFTKMFTLNI--RRK--PQV--------LAEASASQASCFSDGYPLPSWTWKKC 444

Query: 387 DRKLEENKIYRTQHDGNFYFID-----------LSSVSLFDSGRWTCLAENAVGRSHCSC 435
             K        T+   N                L+           C A N++G S  + 
Sbjct: 445 SDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETI 504

Query: 436 ELSVLVP 442
            L+   P
Sbjct: 505 LLNSPGP 511

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  119 bits (299), Expect = 4e-28
 Identities = 30/249 (12%), Positives = 62/249 (24%), Gaps = 30/249 (12%)

Query: 700 TGTSSLGSYCCVAKNVM----GKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL 755
           TG   L    CV  N         +SS+   +          + L      ++   +   
Sbjct: 2   TGNQDLPVIKCVLINHKNNDSSVGKSSSYPMV------SESPEDLGCALRPQSSGTVYEA 55

Query: 756 KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVA 815
            + +  V+      V V         W      +    +  +  +  GV  + I  +   
Sbjct: 56  AAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL--QNRGVVSMVILKMTET 113

Query: 816 DQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQ 875
              E+     ++         + +          +               L C    VP+
Sbjct: 114 QAGEYLLFIQSEATNYTILFTVSIRNT-----LLYTLRRPYFRKMENQDALVCISESVPE 168

Query: 876 PTLKWFKDGRELK---------AGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALL 926
           P ++W     + +              K++    G        C A N +G   +    +
Sbjct: 169 PIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFG----TDIRCCARNELGRECTRLFTI 224

Query: 927 GFEDKSQIE 935
                 Q  
Sbjct: 225 DLNQTPQTT 233

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  112 bits (282), Expect = 5e-26
 Identities = 41/391 (10%), Positives = 91/391 (23%), Gaps = 81/391 (20%)

Query: 2   GIPTPQLIWYKDNKKIKAGD-----IFALTANPKDPSSLGTYTCEAVNCMGAAFSTS--- 53
            +P P + W   + + ++       +                 C A N +G   +     
Sbjct: 165 SVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTI 224

Query: 54  ------------RVIARGQQSFLD---------------NDDVPFNRAQGDHPIFGNRFR 86
                         +  G+  ++                 ++              +  R
Sbjct: 225 DLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNR 284

Query: 87  AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH--- 143
            + R       +  V R+D G Y+ ++S     S     +++         FI   +   
Sbjct: 285 TMIRILF--AFVSSVARNDTGYYTCSSSKHPSQSA---LVTIV-----EKGFINATNSSE 334

Query: 144 DIAVKVGTRARLLVEIRS--PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRT 201
           D  +         V  ++         F    + P   +                 D   
Sbjct: 335 DYEIDQYEEFCFSVRFKAYPQIRCTWTFS-RKSFPCEQKGL---------------DNGY 378

Query: 202 ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRAR 261
            ++     +   G Y   A N+    T  F L++  +    P          +   + ++
Sbjct: 379 SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI--RRK--PQV--------LAEASASQ 426

Query: 262 LLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDD 319
                   P      +   + +   +              R +     +   +       
Sbjct: 427 ASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNR-KANRKVFGQWVSSSTLNMSEAIK 485

Query: 320 GGRYSVTASNESGYSTAKFELSVESQVPDAP 350
           G      A N  G S     L+     P   
Sbjct: 486 GFLVKCCAYNSLGTSCETILLNSPGPFPFIQ 516

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  207 bits (528), Expect = 6e-60
 Identities = 64/314 (20%), Positives = 108/314 (34%), Gaps = 48/314 (15%)

Query: 651 KPRFVESLKAVMTDDGLVSFECKVVGF-PTPTLQWFKDNEELKPGDVYQLT-GTSSL--- 705
            P FVE L   +T +  V  +CKV        + W+KD  E+   + +    G  +L   
Sbjct: 7   GPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLIT 66

Query: 706 -------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSC 758
                  G Y  + K+  GK +S  +L  E  +  + E  K + L+              
Sbjct: 67  EFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDL--------KI 118

Query: 759 QATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQA 818
           Q+T      ++       + KV+W  +   +  SD VK    T     L+I+     D+ 
Sbjct: 119 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTG-VTGEQIWLQINEPTPNDKG 177

Query: 819 EWKCIATNDFGQSITSCFLKLNVPKHYK---------------KPKFLEELKAVLS--EG 861
           ++     +       +  L                        + + L  L  V++  EG
Sbjct: 178 KYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEG 237

Query: 862 GAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCE 911
            A+NL C V G P P + W K+ + L + D   +      T             G Y   
Sbjct: 238 KALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLV 297

Query: 912 AHNCMGTTSSSAAL 925
             N  G+ +S   +
Sbjct: 298 VKNKYGSETSDFTV 311

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  179 bits (456), Expect = 3e-50
 Identities = 47/317 (14%), Positives = 103/317 (32%), Gaps = 31/317 (9%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVL-VPPWPRSIYWYNKEGV-VEASDKYHIMADGLGG 607
            P F++ +   +     + +L+C+V  +      I WY K+   +   +K+       G 
Sbjct: 7   GPHFVEYLSW-EVTGECNVLLKCKVANIKKET-HIVWY-KDEREISVDEKHDFKD---GI 60

Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRK------PRFVESLKAV 661
            ++ I      D G ++ +     G K  S   +     K                LK  
Sbjct: 61  CTLLITEFSKKDAGIYEVILKDDRG-KDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQ 119

Query: 662 MTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL----------GSY 708
            T +G+  +           + W  +   ++  D  +         L          G Y
Sbjct: 120 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKY 179

Query: 709 CCVAKNVMGKAESSTQLTIEDIRNHLSEEDKL---LLLTNNKAPKFIEGLKSCQATVNEE 765
                +     + +  L+ +      +E  +L    +   N+A               + 
Sbjct: 180 VMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKA 239

Query: 766 FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT 825
              T  V   P P+VSW ++++ +   D+  +  E     +  I+ +  AD  ++  +  
Sbjct: 240 LNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVK 299

Query: 826 NDFGQSITSCFLKLNVP 842
           N +G   +   + + +P
Sbjct: 300 NKYGSETSDFTVSVFIP 316

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  176 bits (447), Expect = 5e-49
 Identities = 52/322 (16%), Positives = 105/322 (32%), Gaps = 28/322 (8%)

Query: 345 QVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGN 403
                P F+  L    V       L  ++     E  I WY+++R++  ++ +  +    
Sbjct: 3   DPFTGPHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGIC 61

Query: 404 FYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAY------KAPFFTKELEAI 457
              I     S  D+G +  + ++  G+     +L     K        K      +L+  
Sbjct: 62  TLLIT--EFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQ 119

Query: 458 LTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA---------GDIFALT---ANPKDPSSL 505
            T +G          +   ++ W  +   I+          G+   L      P D    
Sbjct: 120 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDK--- 176

Query: 506 GTYTCEAVNCMGAAFSTSRV-IARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKI 564
           G Y  E  +       T  +      +++ +   +   ++     A +     + V  + 
Sbjct: 177 GKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQE 236

Query: 565 GTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWK 624
           G +  L C V   P P  + W   E  + + D  ++  +        IN +   D G++ 
Sbjct: 237 GKALNLTCNVWGDPPPE-VSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYG 295

Query: 625 CVATSSSGVKQFSAAYVHVLMP 646
            V  +  G  + S   V V +P
Sbjct: 296 LVVKNKYG-SETSDFTVSVFIP 316

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  168 bits (428), Expect = 2e-46
 Identities = 51/326 (15%), Positives = 100/326 (30%), Gaps = 55/326 (16%)

Query: 238 QVPDAPAFIRRLHDIAVKVGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPI 294
                P F+  L    V       L  ++ +    T I    D             +  I
Sbjct: 3   DPFTGPHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKD-------------EREI 48

Query: 295 -FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES-------QV 346
               +     +DG   L I    + D G Y V   ++ G   ++ +L  E+         
Sbjct: 49  SVDEKHDF--KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVC 106

Query: 347 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYF 406
                    L   +   G +    V      ++K++W  N   +  +   +T   G   +
Sbjct: 107 KKIALSATDLKIQSTAEGIQLYSFVTYYVE-DLKVNWSHNGSAIRYSDRVKTGVTGEQIW 165

Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL----------------VPKAYKAPFF 450
           + ++  +  D G++     +       + +LS                  + +  +A   
Sbjct: 166 LQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVL 225

Query: 451 TKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL---- 505
               + +  ++G  ++L C V G P P++ W K+ K + + D   L       +      
Sbjct: 226 GGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTING 285

Query: 506 ------GTYTCEAVNCMGAAFSTSRV 525
                 G Y     N  G+  S   V
Sbjct: 286 VSTADSGKYGLVVKNKYGSETSDFTV 311

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  148 bits (374), Expect = 2e-39
 Identities = 47/335 (14%), Positives = 98/335 (29%), Gaps = 44/335 (13%)

Query: 131 QVPDAPAFIRRLHDIAVKVGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPI 187
                P F+  L    V       L  ++ +    T I    D             +  I
Sbjct: 3   DPFTGPHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKD-------------EREI 48

Query: 188 -FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFI 246
               +     +DG   L I    + D G Y V   ++ G   ++ +L  E+        +
Sbjct: 49  SVDEKHDF--KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA----FKELM 102

Query: 247 RRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPI-FGNRFRAINRD 305
             +        T  ++        ++               +     I + +R +     
Sbjct: 103 MEVCKKIALSATDLKIQSTA-EGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTG 161

Query: 306 GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD----------------- 348
            +  L I     +D G+Y +   +         +LS ++                     
Sbjct: 162 EQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNR 221

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYR-TQHDGNFYFI 407
           A         + ++ G    L   +      ++ W +N++ L  +         G   + 
Sbjct: 222 ARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYF 281

Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
            ++ VS  DSG++  + +N  G       +SV +P
Sbjct: 282 TINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 316

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  135 bits (341), Expect = 6e-35
 Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 22/231 (9%)

Query: 743 LTNNKAPKFIEGLKSCQATVNEEFKFTVQVS-ISPEPKVSWFRDDQQVVESDNVKILKET 801
           +     P F+E L   + T         +V+ I  E  + W++D++++   +        
Sbjct: 2   IDPFTGPHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD-- 58

Query: 802 LGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHY------KKPKFLEELK 855
            G+C L I      D   ++ I  +D G+  +   L     K        K      +LK
Sbjct: 59  -GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLK 117

Query: 856 AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL---------- 905
              +  G          V    + W  +G  ++  D  K          L          
Sbjct: 118 IQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKT-GVTGEQIWLQINEPTPNDK 176

Query: 906 GIYTCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALIVKDPSLSTIQE 956
           G Y  E  +       +  L G        + +  K+A I +      +  
Sbjct: 177 GKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGG 227

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  124 bits (312), Expect = 4e-31
 Identities = 44/273 (16%), Positives = 89/273 (32%), Gaps = 26/273 (9%)

Query: 90  RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKV 149
           +DG   L I    + D G Y V   ++ G   ++ +L  E+        +  +       
Sbjct: 57  KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA----FKELMMEVCKKIALS 112

Query: 150 GTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPI-FGNRFRAINRDGRTELNIRRV 208
            T  ++        ++               +     I + +R +      +  L I   
Sbjct: 113 ATDLKIQSTA-EGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEP 171

Query: 209 RRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS 268
             +D G+Y +   +         +LS ++   +A A  +RL   A+    RAR+L  +  
Sbjct: 172 TPNDKGKYVMELFDGKTGHQKTVDLSGQA-YDEAYAEFQRLKQAAIAEKNRARVLGGLPD 230

Query: 269 PTEIKCQFDLNNTIPFSFRAQG-----------DHPIFGNRFRAI--NRDGRTELNIRRV 315
              I+        +  +    G           +  +  +    +           I  V
Sbjct: 231 VVTIQ----EGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGV 286

Query: 316 RRDDGGRYSVTASNESGYSTAKFELSVESQVPD 348
              D G+Y +   N+ G  T+ F +SV   +P+
Sbjct: 287 STADSGKYGLVVKNKYGSETSDFTVSV--FIPE 317

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  114 bits (286), Expect = 8e-28
 Identities = 47/293 (16%), Positives = 91/293 (31%), Gaps = 65/293 (22%)

Query: 4   PTPQLIWYKDNKKIKAGDIFALT----------ANPKDPSSLGTYTCEAVNCMGAAFSTS 53
               ++WYKD ++I   +                + KD    G Y     +  G   S  
Sbjct: 35  KETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDA---GIYEVILKDDRGKDKSRL 91

Query: 54  RVIARG---------QQSFLDNDDVPFN-RAQG---------------------DHPI-F 81
           +++            ++  L   D+     A+G                        I +
Sbjct: 92  KLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY 151

Query: 82  GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR 141
            +R +      +  L I     +D G+Y +   +         +LS ++   +A A  +R
Sbjct: 152 SDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQA-YDEAYAEFQR 210

Query: 142 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG-----------DHPIFGN 190
           L   A+    RAR+L  +     I+        +  +    G           +  +  +
Sbjct: 211 LKQAAIAEKNRARVLGGLPDVVTIQ----EGKALNLTCNVWGDPPPEVSWLKNEKALASD 266

Query: 191 RFRAI--NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 241
               +           I  V   D G+Y +   N+ G  T+ F +SV   +P+
Sbjct: 267 DHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV--FIPE 317

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 93.8 bits (233), Expect = 8e-21
 Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 17/154 (11%)

Query: 845 YKKPKFLEELKAVLSEGGAVNLECKVIGV-PQPTLKWFKDGRELKAGDIHKIISGEDGTC 903
           +  P F+E L   ++    V L+CKV  +  +  + W+KD RE+   + H     +DG C
Sbjct: 5   FTGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF---KDGIC 61

Query: 904 CL----------GIYTCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALIVKDPSLST 953
            L          GIY     +  G   S   L+    K   E   E  K + +    L  
Sbjct: 62  TLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFK---ELMMEVCKKIALSATDLKI 118

Query: 954 IQEEGTSEIYDTPMASIEEREISFSFDGKEVSVS 987
                  ++Y      +E+ ++++S +G  +  S
Sbjct: 119 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS 152

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 69.9 bits (171), Expect = 7e-13
 Identities = 23/189 (12%), Positives = 43/189 (22%), Gaps = 61/189 (32%)

Query: 2   GIPTPQLIWYKDNKKIKA---------GDIFALT---ANPKDPSSLGTYTCEAVNCMGAA 49
            +   ++ W  +   I+          G+   L      P D    G Y  E  +     
Sbjct: 134 YVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDK---GKYVMELFDGKTGH 190

Query: 50  FSTSRVIARGQQSFLDNDDVPFN-------------------------------RAQG-- 76
             T  +  +                                                G  
Sbjct: 191 QKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDP 250

Query: 77  ---------DHPIFGNRFRAI--NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFE 125
                    +  +  +    +           I  V   D G+Y +   N+ G  T+ F 
Sbjct: 251 PPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFT 310

Query: 126 LSVESQVPD 134
           +SV   +P+
Sbjct: 311 VSV--FIPE 317

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  212 bits (540), Expect = 2e-59
 Identities = 77/565 (13%), Positives = 144/565 (25%), Gaps = 119/565 (21%)

Query: 416 DSGRWTC----LAENAVGRSHCSCELSVLVPKAYKAPFFTKEL-EAILTEQGTVSLECKV 470
            +  + C    L     G S  S       P     P       + I+     + L C  
Sbjct: 6   GAWDFLCVLLLLLRVQTGSSQPSVSPGEPSP-----PSIHPGKSDLIVRVGDEIRLLCTD 60

Query: 471 MGIPTPQLIWYKDNKKIKAGDIFA-LTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARG 529
            G     + W  +       +          + ++ G YTC   + +    ++  V  R 
Sbjct: 61  PG----FVKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLS---NSIYVFVRD 113

Query: 530 QQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKE 589
                                        ++  K     ++ C +  P      Y     
Sbjct: 114 --------------------PAKLFLVDRSLYGKEDNDTLVRCPLTDPEVT--NYSLKGC 151

Query: 590 GVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNY 649
                      + D   G  I  +   A       C               + V  P   
Sbjct: 152 QGKPLPKDLRFIPDPKAGIMI-KSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVR-PAFK 209

Query: 650 RKPRFVESLKAVMTDDG-LVSFECKVVGFPTPT-LQWFKDNEELKPGDVYQLT------- 700
             P    S  + +  +G   +  C +    +     W ++N + K  + Y          
Sbjct: 210 AVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNY 269

Query: 701 -GTSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAP 749
              ++L          G + C A N  G A  +T L + D                    
Sbjct: 270 ERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVD------------------KG 311

Query: 750 KFI---EGLKSCQATVNEEFKFTVQVSISPEPK-VSWFRDDQQVVESDNVKILKET---- 801
                     +      E     V+    P+P+   W   ++   +        E     
Sbjct: 312 FINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNI 371

Query: 802 LGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEG 861
             V  L +  L+  +   +  + +N    +  +  + +N       P+ L          
Sbjct: 372 RYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTK-----PEILTY-----DRL 421

Query: 862 GAVNLECKVIGVPQPTLKWFK-------DGRELKAGDIHKIISGEDGTCCL--------- 905
               L+C   G P+PT+ W+            +   D+  + S       L         
Sbjct: 422 VNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSS 481

Query: 906 -----GIYTCEAHNCMGTTSSSAAL 925
                G   C+A+N +G TS+    
Sbjct: 482 AFKHNGTVECKAYNDVGKTSAYFNF 506

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  201 bits (513), Expect = 8e-56
 Identities = 80/571 (14%), Positives = 164/571 (28%), Gaps = 113/571 (19%)

Query: 209 RRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS 268
                  +           T   + SV    P  P+      D+ V+VG   RL      
Sbjct: 3   GARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRL------ 56

Query: 269 PTEIKCQFDLNNTIPFSFRAQGDHPI--FGNRFRAINRDGRTELNIRRVRRDDGGRYSVT 326
                C                   +          N + + E    +    + G+Y+ T
Sbjct: 57  ----LCT--------------DPGFVKWTFEILDETNENKQNEWITEKAEATNTGKYTCT 98

Query: 327 ASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN 386
             +    S       +   V D          +  K      +   +  P E+  +  + 
Sbjct: 99  NKHGLSNS-------IYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDP-EVTNYSLKG 150

Query: 387 D--RKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKA 444
              + L ++  +             S    +      C  +   G+S  S +  + V  A
Sbjct: 151 CQGKPLPKDLRFIPDPKAGIMIK--SVKRAYHRLCLHCSVDQE-GKSVLSEKFILKVRPA 207

Query: 445 YKA-PFFTKELEAILTEQG-TVSLECKVMGIPTP-QLIWYKDNKKIKAGDIFALTANPKD 501
           +KA P  +    + L  +G   ++ C +  + +     W ++N + K  + +    +   
Sbjct: 208 FKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDF 267

Query: 502 P----SSL----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPP 547
                ++L          G + C A N  G+A  T+ +    +          F ++ P 
Sbjct: 268 NYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDK---------GFINIFPM 318

Query: 548 GPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADG--- 604
               +F+ +        G +  L  +    P P    W           + +  ++    
Sbjct: 319 INTTVFVND--------GENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESN 370

Query: 605 -LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMT 663
                 + +  L+  + G +  + ++S      +   V+V        P  +   + V  
Sbjct: 371 IRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAF-NVYVNTK-----PEILTYDRLVN- 423

Query: 664 DDGLVSFECKVVGFPTPTLQWFK-------DNEELKPGDVYQLTGTSSL----------- 705
                  +C   GFP PT+ W+         +  + P DV  L  +              
Sbjct: 424 ----GMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSID 479

Query: 706 -------GSYCCVAKNVMGKAESSTQLTIED 729
                  G+  C A N +GK  +      + 
Sbjct: 480 SSAFKHNGTVECKAYNDVGKTSAYFNFAFKG 510

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  186 bits (474), Expect = 1e-50
 Identities = 85/582 (14%), Positives = 149/582 (25%), Gaps = 110/582 (18%)

Query: 102 RRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS 161
                  +           T   + SV    P  P+      D+ V+VG   RL      
Sbjct: 3   GARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRL------ 56

Query: 162 PTEIKCQFDLNNTIPFSFRAQGDHPI--FGNRFRAINRDGRTELNIRRVRRDDGGRYSVT 219
                C                   +          N + + E    +    + G+Y+ T
Sbjct: 57  ----LCT--------------DPGFVKWTFEILDETNENKQNEWITEKAEATNTGKYTCT 98

Query: 220 ASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLN 279
             +           S+   V D          +  K            + T ++C     
Sbjct: 99  NKHGLSN-------SIYVFVRDPAKLFLVDRSLYGKED----------NDTLVRCPLTDP 141

Query: 280 NTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRR-DDGGRYSVTASNESG-YSTAK 337
               +S +     P+  +       D +  + I+ V+R         +   E     + K
Sbjct: 142 EVTNYSLKGCQGKPLPKD--LRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEK 199

Query: 338 FELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS-PTEIKIHWYRNDRKLEENKIY 396
           F L V       P          ++ G    +   I+   + +   W R + + +  + Y
Sbjct: 200 FILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKY 259

Query: 397 RTQHDGNFYFIDLS-----SVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFT 451
            + H G+F +   +     S  + DSG + C A N  G ++ +  L V+         F 
Sbjct: 260 NSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKG--FINIFP 317

Query: 452 KELEAILTEQG-TVSLECKVMGIPTPQLI-WYKDNKKIKAGDIFALTANPKDP----SSL 505
                +    G  V L  +    P P+   W   N+           +  +      S L
Sbjct: 318 MINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSEL 377

Query: 506 ----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIK 555
                     GTYT    N    A     V                         P  + 
Sbjct: 378 HLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVN--------------------TKPEILT 417

Query: 556 EVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDK-----------YHIMADG 604
                      + +L+C     P P +I WY   G  +                     G
Sbjct: 418 YDR------LVNGMLQCVAAGFPEP-TIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFG 470

Query: 605 LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
                  I+      +G  +C A +  G              
Sbjct: 471 KLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAY-FNFAFKGN 511

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  183 bits (466), Expect = 1e-49
 Identities = 71/537 (13%), Positives = 141/537 (26%), Gaps = 83/537 (15%)

Query: 36  GTYTCEAV----NCMGAAFSTSRV---------IARGQQSFLDNDDVPFN-RAQGDHPIF 81
             + C  +       G++  +              +        D++       G     
Sbjct: 8   WDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGFVKWT 67

Query: 82  GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR 141
                  N + + E    +    + G+Y+ T  +           S+   V D       
Sbjct: 68  FEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSN-------SIYVFVRDPAKLFLV 120

Query: 142 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRT 201
              +  K            + T ++C         +S +     P+  +       D + 
Sbjct: 121 DRSLYGKED----------NDTLVRCPLTDPEVTNYSLKGCQGKPLPKD--LRFIPDPKA 168

Query: 202 ELNIRRVRR-DDGGRYSVTASNESG-YSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTR 259
            + I+ V+R         +   E     + KF L V       P          ++ G  
Sbjct: 169 GIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEE 228

Query: 260 ARLLVEIR---SPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVR 316
             +   I+   S      + + N+      +    +  + +      R     L I   R
Sbjct: 229 FTVTCTIKDVSSSVYSTWKRE-NSQTKLQEK----YNSWHHGDFNYERQA--TLTISSAR 281

Query: 317 RDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-S 375
            +D G +   A+N  G +     L V  +      F      + V  G    L+VE    
Sbjct: 282 VNDSGVFMCYANNTFGSANVTTTLEVVDK-GFINIFPMINTTVFVNDGENVDLIVEYEAF 340

Query: 376 PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID-----LSSVSLFDSGRWTCLAENAVGR 430
           P      W   +R   +      + +            L+ +   + G +T L  N+   
Sbjct: 341 PKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVN 400

Query: 431 SHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAG 490
           +  +  + V        P        +        L+C   G P P + WY      +  
Sbjct: 401 AAIAFNVYVNTK-----PEILTYDRLV-----NGMLQCVAAGFPEPTIDWYFCPGTEQRC 450

Query: 491 D---------------------IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
                                 +   + +       GT  C+A N +G   +     
Sbjct: 451 SASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFA 507

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  179 bits (456), Expect = 2e-48
 Identities = 70/572 (12%), Positives = 140/572 (24%), Gaps = 108/572 (18%)

Query: 316 RRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS 375
                  +           T   + SV    P  P+      D+ V+VG   RLL     
Sbjct: 3   GARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG 62

Query: 376 PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC 435
                + W                ++              ++G++TC  ++ +  S    
Sbjct: 63  F----VKWTFEILDE--------TNENKQNEWITEKAEATNTGKYTCTNKHGLSNS---I 107

Query: 436 ELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYK--------DNKK 486
            + V  P             ++  ++     + C +   P       K         + +
Sbjct: 108 YVFVRDP-----AKLFLVDRSLYGKEDNDTLVRCPL-TDPEVTNYSLKGCQGKPLPKDLR 161

Query: 487 IKAGDIFALT-ANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLM 545
                   +   + K         C      G +  + + I                   
Sbjct: 162 FIPDPKAGIMIKSVKRAYHRLCLHCSVDQ-EGKSVLSEKFI--------------LKVRP 206

Query: 546 PPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADG- 604
                P+      +   + G    + C +          W  +    +  +KY+    G 
Sbjct: 207 AFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGD 266

Query: 605 ---LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL-MPKNYRKPRFVESLKA 660
                  ++ I+     D G + C A ++ G    +   + V+        P    ++  
Sbjct: 267 FNYERQATLTISSARVNDSGVFMCYANNTFGSANVTT-TLEVVDKGFINIFPMINTTVFV 325

Query: 661 VMTDDGLVSFECKVVGFPTPTL-QWFKDNEELKPG--------DVYQLTGTSSL------ 705
              ++  V    +   FP P   QW   N              +   +   S L      
Sbjct: 326 NDGEN--VDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLK 383

Query: 706 ----GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT 761
               G+Y  +  N    A  +  + +                  N  P+ +         
Sbjct: 384 GTEGGTYTFLVSNSDVNAAIAFNVYV------------------NTKPEILT------YD 419

Query: 762 VNEEFKFTVQVSISPEPKVSWF-------RDDQQVVESDNVKILKETLG----VCHLKIH 810
                      +  PEP + W+       R    V+  D   +          V    I 
Sbjct: 420 RLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSID 479

Query: 811 ALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
           +         +C A ND G++           
Sbjct: 480 SSAFKHNGTVECKAYNDVGKTSAYFNFAFKGN 511

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  149 bits (378), Expect = 3e-38
 Identities = 70/482 (14%), Positives = 127/482 (26%), Gaps = 73/482 (15%)

Query: 4   PTPQLIWYKDNKKIKAGDIFA-LTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQS 62
               + W  +       +          + ++ G YTC   + +    S    +    + 
Sbjct: 60  DPGFVKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSN--SIYVFVRDPAKL 117

Query: 63  FLDNDDVPFN----------------------RAQGDHPIFGNRFRAINRDGRTELNIRR 100
           FL +  +                           QG       RF     D +  + I+ 
Sbjct: 118 FLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIP---DPKAGIMIKS 174

Query: 101 VRR-DDGGRYSVTASNESG-YSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVE 158
           V+R         +   E     + KF L V       P          ++ G    +   
Sbjct: 175 VKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCT 234

Query: 159 IR---SPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGR 215
           I+   S      + + N+      +    +  + +      R     L I   R +D G 
Sbjct: 235 IKDVSSSVYSTWKRE-NSQTKLQEK----YNSWHHGDFNYERQA--TLTISSARVNDSGV 287

Query: 216 YSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR---SPTEI 272
           +   A+N  G +     L V  +      F      + V  G    L+VE      P   
Sbjct: 288 FMCYANNTFGSANVTTTLEVVDK-GFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQ 346

Query: 273 KCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG 332
           +  +  N T             +       N    +EL++ R++  +GG Y+   SN   
Sbjct: 347 QWIYM-NRTFT------DKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDV 399

Query: 333 YSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEE 392
            +   F + V +     P        +         L        E  I WY      + 
Sbjct: 400 NAAIAFNVYVNT----KPEI------LTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQR 449

Query: 393 N------------KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
                                       + S +   +G   C A N VG++      +  
Sbjct: 450 CSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFK 509

Query: 441 VP 442
             
Sbjct: 510 GN 511

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 92.8 bits (230), Expect = 1e-19
 Identities = 38/284 (13%), Positives = 76/284 (26%), Gaps = 58/284 (20%)

Query: 2   GIPTP-QLIWYKDNKKIKAGDIFALTANPKDP----SSL----------GTYTCEAVNCM 46
            + +     W ++N + K  + +    +        ++L          G + C A N  
Sbjct: 237 DVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTF 296

Query: 47  GAAFSTS--RVIARGQ----------QSFLDNDDVPFN-RAQG------------DHPIF 81
           G+A  T+   V+ +G               D ++V      +             +    
Sbjct: 297 GSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFT 356

Query: 82  GNRFRAINRDGRTE------LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 135
                    +  +       L++ R++  +GG Y+   SN    +   F + V +     
Sbjct: 357 DKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNT----K 412

Query: 136 PAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 193
           P        +         L       P   I   F        S           N   
Sbjct: 413 PEI------LTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSG 466

Query: 194 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 237
                   + +I        G     A N+ G ++A F  + + 
Sbjct: 467 PPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKG 510

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 71.6 bits (175), Expect = 5e-13
 Identities = 29/244 (11%), Positives = 51/244 (20%), Gaps = 61/244 (25%)

Query: 699 LTGTSSLGSYCCV----AKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEG 754
           + G      + CV     +   G ++ S                          P    G
Sbjct: 1   MRGARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPS------------------PPSIHPG 42

Query: 755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEV 814
                  V +E +            V W  +       +                   E 
Sbjct: 43  KSDLIVRVGDEIRLLCTD----PGFVKWTFEILDETNENKQNEWI---------TEKAEA 89

Query: 815 ADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVP 874
            +  ++ C   +    SI    + +  P       FL +      E     + C +   P
Sbjct: 90  TNTGKYTCTNKHGLSNSIY---VFVRDPAKL----FLVDRSLYGKEDNDTLVRCPLTD-P 141

Query: 875 QPTLKWFK--DGRELKAGD-----------IHKIISGEDGTCCLGIYTCEAHNCMGTTSS 921
           + T    K   G+ L               I  +              C      G +  
Sbjct: 142 EVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHR----LCLHCSVDQ-EGKSVL 196

Query: 922 SAAL 925
           S   
Sbjct: 197 SEKF 200

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  203 bits (518), Expect = 8e-58
 Identities = 83/421 (19%), Positives = 145/421 (34%), Gaps = 74/421 (17%)

Query: 447 APFFTKE----LEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALT------ 496
            P F +E    +  + +E+  V L C+V G P P + W  +   +  G  F  +      
Sbjct: 5   GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 64

Query: 497 --ANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFI 554
              NP      GTY C A N  G     SR                   L          
Sbjct: 65  LINNPNKTQDAGTYQCIATNSFGTI--VSREA----------------KLQFAYLENFKT 106

Query: 555 KEVENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMADGLGGYSIEIN 613
           +    V  + G   +L C         S  W  N+    + + ++     G    ++ I 
Sbjct: 107 RTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG----NLYIA 162

Query: 614 YLEAVDDGEWKCVATSSSGVKQFSAAYVHVL-----MPKNYRKPRFVESLKAVMTDDG-L 667
            +E  D G + CV T++    +       ++     +   Y     V+  + V  + G  
Sbjct: 163 KVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTT 222

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCVAKNVMG 717
           V  EC  +G P PT+ W + + +       +      L          GSY CVA+N  G
Sbjct: 223 VKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRG 282

Query: 718 KAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPE 777
           K  +  QLT                      P +++ +      + E   +  + +  P+
Sbjct: 283 KNVAKGQLTFYA------------------QPNWVQIINDIHVAMEESVFWECKANGRPK 324

Query: 778 PKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFL 837
           P   W ++   ++  D ++I + T     L I  + ++D   ++C+A N  G   +S  L
Sbjct: 325 PTYRWLKNGDPLLTRDRIQIEQGT-----LNITIVNLSDAGMYQCVAENKHGVIFSSAEL 379

Query: 838 K 838
            
Sbjct: 380 S 380

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  191 bits (487), Expect = 1e-53
 Identities = 86/406 (21%), Positives = 149/406 (36%), Gaps = 56/406 (13%)

Query: 349 APAFIRRLHDIAVKV---GTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYR-TQHDGNF 404
            P F++    +   +     + +L  E++   +  I W  N   ++    +R +  DG+ 
Sbjct: 5   GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 64

Query: 405 YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-T 463
              + +     D+G + C+A N+ G    S E  +    AY   F T+    +   +G  
Sbjct: 65  LINNPNKTQ--DAGTYQCIATNSFGTIV-SREAKLQF--AYLENFKTRTRSTVSVRRGQG 119

Query: 464 VSLECKVM-GIPTPQLIWYKDNKKIKAGDIFALT----------ANPKDPSSLGTYTCEA 512
           + L C            W  +       +   ++              D   +G YTC  
Sbjct: 120 MVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSD---VGNYTCVV 176

Query: 513 VNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILEC 572
            N +                      +  + +M      I ++  E V A+ GT+  LEC
Sbjct: 177 TNTVTNHKVLGPPTPL---------ILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLEC 227

Query: 573 QVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSG 632
             L  P P +I W   +G   A       ++G     +EI   +  D G ++CVA +S G
Sbjct: 228 FALGNPVP-TILWRRADGKPIARKARRHKSNG----ILEIPNFQQEDAGSYECVAENSRG 282

Query: 633 VKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEEL 691
            K  +   +          P +V+ +  +       V +ECK  G P PT +W K+ + L
Sbjct: 283 -KNVAKGQLTFYAQ-----PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPL 336

Query: 692 KPGDVYQLTGTSSL----------GSYCCVAKNVMGKAESSTQLTI 727
              D  Q+    +L          G Y CVA+N  G   SS +L++
Sbjct: 337 LTRDRIQIEQ-GTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  187 bits (477), Expect = 2e-52
 Identities = 86/408 (21%), Positives = 146/408 (35%), Gaps = 59/408 (14%)

Query: 547 PGPAPIFIKEVENVKAKI---GTSAILECQVLVPPWPRSIYWYNKEG--VVEASDKYHIM 601
           PG  P+F++E  +V   +        L C+V   P P  I W    G  V    D  + +
Sbjct: 2   PGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKP-HIRWK-LNGTDVDIGMDFRYSV 59

Query: 602 ADGLGGYSIEI-NYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKA 660
            DG    S+ I N  +  D G ++C+AT+S G      A +     +N+       +   
Sbjct: 60  VDG----SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENF----KTRTRST 111

Query: 661 VMTDDGL-VSFECKVV-GFPTPTLQWFKDNEELKPGD-VYQLTGTSSL----------GS 707
           V    G  +   C         +  W  +       +  +    T +L          G+
Sbjct: 112 VSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGN 171

Query: 708 YCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFK 767
           Y CV  N +   +     T   +RN     +        +    ++  ++  A      K
Sbjct: 172 YTCVVTNTVTNHKVLGPPTPLILRNDGVMGEY-------EPKIEVQFPETVPAEKGTTVK 224

Query: 768 FTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND 827
                  +P P + W R D + +     +          L+I   +  D   ++C+A N 
Sbjct: 225 LECFALGNPVPTILWRRADGKPIARKARRHKSNG----ILEIPNFQQEDAGSYECVAENS 280

Query: 828 FGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRE 886
            G+++    L          P +++ +  + ++   +V  ECK  G P+PT +W K+G  
Sbjct: 281 RGKNVAKGQLTFYAQ-----PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDP 335

Query: 887 LKAGDIHKIISG---------EDGTCCLGIYTCEAHNCMGTTSSSAAL 925
           L   D  +I  G          D     G+Y C A N  G   SSA L
Sbjct: 336 LLTRDRIQIEQGTLNITIVNLSDA----GMYQCVAENKHGVIFSSAEL 379

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  148 bits (375), Expect = 9e-39
 Identities = 77/408 (18%), Positives = 135/408 (33%), Gaps = 48/408 (11%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRA 194
            P F++    +   + +            ++ C+   N      ++  G     G  FR 
Sbjct: 5   GPVFVQEPSHVMFPLDSE-------EKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRY 57

Query: 195 INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR-LHDIA 253
              DG + L     +  D G Y   A+N  G   ++     + Q      F  R    ++
Sbjct: 58  SVVDG-SLLINNPNKTQDAGTYQCIATNSFGTIVSR---EAKLQFAYLENFKTRTRSTVS 113

Query: 254 VKVGTRARLLVEIRSPTEIKCQFDLNNTIP-FSFRAQGDHPIFGNRFRAINRDGRTELNI 312
           V+ G    L           C    ++    +++          NR       G   L I
Sbjct: 114 VRRGQGMVL----------LCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG--NLYI 161

Query: 313 RRVRRDDGGRYSVTASNESG---YSTAKFELSVESQVPDA----PAFIRRLHDIAVKVGT 365
            +V + D G Y+   +N             L + +            ++    +  + GT
Sbjct: 162 AKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGT 221

Query: 366 RARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLA 424
             +L      +P    I W R D K    K  R + +G      + +    D+G + C+A
Sbjct: 222 TVKLECFALGNPV-PTILWRRADGKPIARKARRHKSNGILE---IPNFQQEDAGSYECVA 277

Query: 425 ENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKD 483
           EN+ G++    +L+         P + + +  I      +V  ECK  G P P   W K+
Sbjct: 278 ENSRGKNVAKGQLTFYAQ-----PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKN 332

Query: 484 NKKIKAGDIF-----ALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
              +   D        L     + S  G Y C A N  G  FS++ + 
Sbjct: 333 GDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELS 380

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  130 bits (328), Expect = 1e-32
 Identities = 75/369 (20%), Positives = 124/369 (33%), Gaps = 48/369 (13%)

Query: 82  GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR 141
           G  FR    DG + L     +  D G Y   A+N  G   ++     + Q      F  R
Sbjct: 52  GMDFRYSVVDG-SLLINNPNKTQDAGTYQCIATNSFGTIVSR---EAKLQFAYLENFKTR 107

Query: 142 -LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIP-FSFRAQGDHPIFGNRFRAINRDG 199
               ++V+ G    L           C    ++    +++          NR       G
Sbjct: 108 TRSTVSVRRGQGMVL----------LCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG 157

Query: 200 RTELNIRRVRRDDGGRYSVTASNESG---YSTAKFELSVESQVPDA----PAFIRRLHDI 252
              L I +V + D G Y+   +N             L + +            ++    +
Sbjct: 158 --NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETV 215

Query: 253 AVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFS-FRAQGDHPIFGNRFRAINRDGRTELN 311
             + GT  +L          +C    N        RA G       R    N      L 
Sbjct: 216 PAEKGTTVKL----------ECFALGNPVPTILWRRADGKPIARKARRHKSNG----ILE 261

Query: 312 IRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLV 371
           I   +++D G Y   A N  G + AK +L+  +     P +++ ++DI V +        
Sbjct: 262 IPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA----QPNWVQIINDIHVAMEESVFWEC 317

Query: 372 EIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS 431
           +     +    W +N   L      R Q +     I  + V+L D+G + C+AEN  G  
Sbjct: 318 KANGRPKPTYRWLKNGDPLLTRD--RIQIEQGTLNI--TIVNLSDAGMYQCVAENKHGVI 373

Query: 432 HCSCELSVL 440
             S ELSV+
Sbjct: 374 FSSAELSVI 382

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  123 bits (309), Expect = 3e-30
 Identities = 73/394 (18%), Positives = 120/394 (30%), Gaps = 93/394 (23%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALT--------ANPKDPSSLGTYTCEAVNCMGAAFS-T 52
           G P P + W  +   +  G  F  +         NP      GTY C A N  G   S  
Sbjct: 34  GNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSRE 93

Query: 53  SRVIARGQQSFLDNDDVPFNRAQGD------HPIFG----------NRFRAINRDGRT-- 94
           +++     ++F        +  +G        P             N + +   + R   
Sbjct: 94  AKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVS 153

Query: 95  ----ELNIRRVRRDDGGRYSVTASNESG---YSTAKFELSVESQVPDA----PAFIRRLH 143
                L I +V + D G Y+   +N             L + +            ++   
Sbjct: 154 QETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPE 213

Query: 144 DIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFS-FRAQGDHPIFGNRFRAINRDGRTE 202
            +  + GT  +L          +C    N        RA G       R    N      
Sbjct: 214 TVPAEKGTTVKL----------ECFALGNPVPTILWRRADGKPIARKARRHKSNG----I 259

Query: 203 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 262
           L I   +++D G Y   A N  G + AK +L+  +     P +++ ++DI V +      
Sbjct: 260 LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA----QPNWVQIINDIHVAMEESVFW 315

Query: 263 LVEIRSPTEIKCQFDLNNTIPFSFRAQGD-----------HPIFGNRFRAINRDGRTELN 311
                     +C+            A G             P+       I +     LN
Sbjct: 316 ----------ECK------------ANGRPKPTYRWLKNGDPLLTRDRIQIEQG---TLN 350

Query: 312 IRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
           I  V   D G Y   A N+ G   +  ELSV ++
Sbjct: 351 ITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 89.1 bits (221), Expect = 8e-19
 Identities = 38/197 (19%), Positives = 67/197 (34%), Gaps = 29/197 (14%)

Query: 748 APKFIEGLKSCQATVNEE---FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKE--TL 802
            P F++        ++ E    K + +V  +P+P + W  +   V    + +      +L
Sbjct: 5   GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 64

Query: 803 GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLS--E 860
               L  +  +  D   ++CIATN FG +I S   KL          F    ++ +S   
Sbjct: 65  ----LINNPNKTQDAGTYQCIATNSFG-TIVSREAKLQFAY---LENFKTRTRSTVSVRR 116

Query: 861 GGAVNLECKVI-GVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYT 909
           G  + L C       + +  W  +       +  + +S E G   L          G YT
Sbjct: 117 GQGMVLLCGPPPHSGELSYAWIFNEYPSYQDN-RRFVSQETGN--LYIAKVEKSDVGNYT 173

Query: 910 CEAHNCMGTTSSSAALL 926
           C   N +          
Sbjct: 174 CVVTNTVTNHKVLGPPT 190

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 69.9 bits (171), Expect = 1e-12
 Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 21/118 (17%)

Query: 848 PKFLEELKAVL----SEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTC 903
           P F++E   V+    SE   V L C+V G P+P ++W  +G ++  G   +     DG+ 
Sbjct: 6   PVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSV-VDGSL 64

Query: 904 CL---------GIYTCEAHNCMGTTSSSAALLGFEDKSQIEK-------AEEGKKALI 945
            +         G Y C A N  GT  S  A L F      +           G+  ++
Sbjct: 65  LINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVL 122

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  200 bits (510), Expect = 1e-57
 Identities = 58/316 (18%), Positives = 109/316 (34%), Gaps = 51/316 (16%)

Query: 651 KPRFVESLKAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL- 705
            P   E +  V  D  + ++FEC     P     W KD    +     ++      + + 
Sbjct: 3   DPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMT 61

Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLK 756
                    G Y C   +  G A S      E  R      +             ++   
Sbjct: 62  FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEH------KFPTVPVKSEL 115

Query: 757 SCQATVNEEFKFTVQV-SISPEPKVSWFRDDQQVVESDNVKIL-KETLGVCHLKIHALEV 814
           + +     + +F +Q   +S   KV++  +++++ E    K+      G+  + +  L+ 
Sbjct: 116 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQD 175

Query: 815 ADQAEWKCIATNDFGQSITSCFLKLNVPKHYKK--------------PKFLEELKAVLSE 860
            D+  +     +    + ++  L  +V K  +K              P F+E L   ++ 
Sbjct: 176 EDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTG 235

Query: 861 GGAVNLECKVIGV-PQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYT 909
              V L+CKV  +  +  + W+KD RE+   + H     +DG C L          GIY 
Sbjct: 236 ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF---KDGICTLLITEFSKKDAGIYE 292

Query: 910 CEAHNCMGTTSSSAAL 925
               +  G   S   L
Sbjct: 293 VILKDDRGKDKSRLKL 308

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  173 bits (440), Expect = 3e-48
 Identities = 54/318 (16%), Positives = 96/318 (30%), Gaps = 45/318 (14%)

Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKA---------GDIFALT 496
            PF  + +  +  +   +++ EC     P  +  W KD    +          G+   +T
Sbjct: 3   DPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMT 61

Query: 497 ANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKE 556
                   LG Y+C+  +  G A S        +                     + +K 
Sbjct: 62  FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELK--------RLLALSHEHKFPTVPVKS 113

Query: 557 VENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGG-YSIEINYL 615
              V+           Q         + +   E  +    KY +  D   G   + +  L
Sbjct: 114 ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKL 173

Query: 616 EAVDDGEWKCVATSSSGVKQFSA-------------AYVHVLMPKNYRKPRFVESLKAVM 662
           +  D+G +             +              A          + P FVE L   +
Sbjct: 174 QDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEV 233

Query: 663 TDDGLVSFECKVVGFPTPT-LQWFKDNEELKPGDVYQLT-GTSSL----------GSYCC 710
           T +  V  +CKV      T + W+KD  E+   + +    G  +L          G Y  
Sbjct: 234 TGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEV 293

Query: 711 VAKNVMGKAESSTQLTIE 728
           + K+  GK +S  +L  E
Sbjct: 294 ILKDDRGKDKSRLKLVDE 311

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  172 bits (438), Expect = 6e-48
 Identities = 57/315 (18%), Positives = 107/315 (33%), Gaps = 32/315 (10%)

Query: 548 GPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGG 607
           G  P   + V NV      S   EC  + P       W       E S +  + + G   
Sbjct: 1   GIDPFTKEVVVNVDDDGVISLNFECDKMTPK-SE-FSWSKDYVSTEDSPRLEVESKG-NK 57

Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLM------PKNYRKPRFVESLKAV 661
             +    L   D G + C  T + G+          L        ++      V+S  AV
Sbjct: 58  TKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAV 117

Query: 662 -MTDDGLVSFECKVV-GFPTPTLQWFKDNEELKPGDVYQL-----TGTSSL--------- 705
            + + G V F  +         + +  + +E+  G  Y++     TG   +         
Sbjct: 118 EILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDED 177

Query: 706 -GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEED-KLLLLTNNKAPKFIEGLKSCQATVN 763
            G+Y    ++      S+  L  +  +    E + +       + P F+E L S + T  
Sbjct: 178 EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGE 236

Query: 764 EEFKFTVQVS-ISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKC 822
                  +V+ I  E  + W++D++++   +         G+C L I      D   ++ 
Sbjct: 237 CNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD---GICTLLITEFSKKDAGIYEV 293

Query: 823 IATNDFGQSITSCFL 837
           I  +D G+  +   L
Sbjct: 294 ILKDDRGKDKSRLKL 308

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  155 bits (393), Expect = 5e-42
 Identities = 41/311 (13%), Positives = 98/311 (31%), Gaps = 28/311 (9%)

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
            P     + ++            +  +P   +  W ++    E++     +  GN   + 
Sbjct: 3   DPFTKEVVVNVDDDGVISLNFECDKMTPK-SEFSWSKDYVSTEDSPRLEVESKGNKTKMT 61

Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSC--------ELSVLVPKAYKAPFFTKELEAILTE 460
              + + D G ++C   +  G +             L++     +       EL   + E
Sbjct: 62  FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILE 121

Query: 461 QGTVSLECKV-MGIPTPQLIWYKDNKKIKAGDIFALTANPKDPS-SL----------GTY 508
           +G V    +        ++ +  + K+I  G  + +  +       +          GTY
Sbjct: 122 KGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTY 181

Query: 509 TCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSA 568
           T +  +      ST  ++    +      +      +     P F+ E  + +     + 
Sbjct: 182 TFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQG-PHFV-EYLSWEVTGECNV 239

Query: 569 ILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVA 627
           +L+C+V        I WY K+   +   +K+       G  ++ I      D G ++ + 
Sbjct: 240 LLKCKVANIKKETHIVWY-KDEREISVDEKHDFKD---GICTLLITEFSKKDAGIYEVIL 295

Query: 628 TSSSGVKQFSA 638
               G  +   
Sbjct: 296 KDDRGKDKSRL 306

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  138 bits (348), Expect = 6e-36
 Identities = 45/270 (16%), Positives = 89/270 (32%), Gaps = 36/270 (13%)

Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
            P   E + +          F      +P+ + SW +D     +S  +++  +      +
Sbjct: 3   DPFTKEVVVNVDDDGVISLNFECDKM-TPKSEFSWSKDYVSTEDSPRLEVESKG-NKTKM 60

Query: 808 KIHALEVADQAEWKCIATNDFGQSITSC--------FLKLNVPKHYKKPKFLEELKAVLS 859
               L + D   + C  T+  G + +           L L+    +       EL   + 
Sbjct: 61  TFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEIL 120

Query: 860 EGGAVNLECKV-IGVPQPTLKWFKDGRELKAGDIHKI-ISGEDGTCCL----------GI 907
           E G V    +         + +  + +E+  G  +K+ I    G   +          G 
Sbjct: 121 EKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGT 180

Query: 908 YTCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALIVKDP-----SLSTIQEEGTS-- 960
           YT +  +   T  S+  L+G   K   ++AE  ++  I K        LS       +  
Sbjct: 181 YTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVL 240

Query: 961 ---EIYDTPMASIEEREISFSFDGKEVSVS 987
              ++ +       E  I +  D +E+SV 
Sbjct: 241 LKCKVANIKK----ETHIVWYKDEREISVD 266

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  128 bits (322), Expect = 1e-32
 Identities = 39/337 (11%), Positives = 100/337 (29%), Gaps = 61/337 (18%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNRF 192
            P     + ++            +  +P  E     D                     R 
Sbjct: 3   DPFTKEVVVNVDDDGVISLNFECDKMTPKSEFSWSKD-------------YVSTEDSPRL 49

Query: 193 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP--------DAPA 244
              ++  +T++  + +  DD G YS   ++  G +++      E +              
Sbjct: 50  EVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTV 109

Query: 245 FIRRLHDIAVKVGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPIFGN---R 298
            ++    + +    + R  ++        ++   F+             +  IF     +
Sbjct: 110 PVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFN-------------EKEIFEGPKYK 156

Query: 299 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV---------------E 343
                  G  E+ + +++ +D G Y+    +    + +   L                 E
Sbjct: 157 MHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQE 216

Query: 344 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDG 402
                 P F+  L    V       L  ++     E  I WY+++R++  ++  +     
Sbjct: 217 WIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE--KHDFKD 273

Query: 403 NFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
               + ++  S  D+G +  + ++  G+     +L  
Sbjct: 274 GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  112 bits (282), Expect = 3e-27
 Identities = 40/295 (13%), Positives = 89/295 (30%), Gaps = 60/295 (20%)

Query: 82  GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP-------- 133
             R    ++  +T++  + +  DD G YS   ++  G +++      E +          
Sbjct: 46  SPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHK 105

Query: 134 DAPAFIRRLHDIAVKVGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPIFGN 190
                ++    + +    + R  ++        ++   F+             +  IF  
Sbjct: 106 FPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFN-------------EKEIFEG 152

Query: 191 ---RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV------------ 235
              +       G  E+ + +++ +D G Y+    +    + +   L              
Sbjct: 153 PKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEF 212

Query: 236 ---ESQVPDAPAFIRRLHDIAVKVGTRARLLVEI---RSPTEIKCQFDLNNTIPFSFRAQ 289
              E      P F+  L    V       L  ++   +  T I    D            
Sbjct: 213 QRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKD------------ 259

Query: 290 GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
            +  I  +      +DG   L I    + D G Y V   ++ G   ++ +L  E+
Sbjct: 260 -EREISVDEKHDF-KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 312

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  107 bits (268), Expect = 2e-25
 Identities = 46/300 (15%), Positives = 84/300 (28%), Gaps = 79/300 (26%)

Query: 2   GIPTPQLIWYKDNKKIKA---------GDIFALTANPKDPSSLGTYTCEAVNCMGAAFST 52
             P  +  W KD    +          G+   +T        LG Y+C+  +  G A S 
Sbjct: 28  MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSY 87

Query: 53  S-----------------------------RVIARGQQSFLDNDDVPFNRAQ-----GDH 78
                                          ++ +GQ  F    +     A+      + 
Sbjct: 88  LIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEK 147

Query: 79  PIFGN---RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV------- 128
            IF     +       G  E+ + +++ +D G Y+    +    + +   L         
Sbjct: 148 EIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQ 207

Query: 129 --------ESQVPDAPAFIRRLHDIAVKVGTRARLLVEI---RSPTEIKCQFDLNNTIPF 177
                   E      P F+  L    V       L  ++   +  T I    D       
Sbjct: 208 KEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKD------- 259

Query: 178 SFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 237
                 +  I  +      +DG   L I    + D G Y V   ++ G   ++ +L  E+
Sbjct: 260 ------EREISVDEKHDF-KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 312

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  200 bits (509), Expect = 3e-56
 Identities = 53/438 (12%), Positives = 117/438 (26%), Gaps = 62/438 (14%)

Query: 312 IRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLV 371
                      Y + + +      A   L  +     +   +     + V V     L V
Sbjct: 19  NNDSSVGKSSSYPMVSESPEDLGCA---LRPQ-----SSGTVYEAAAVEVDVSASITLQV 70

Query: 372 EIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS 431
            + +P  I   W      L     +  Q+ G    + +  ++   +G +    ++     
Sbjct: 71  LVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMV-ILKMTETQAGEYLLFIQSEATNY 129

Query: 432 HCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD 491
                +S+          +T         +   +L C    +P P + W   + + ++  
Sbjct: 130 TILFTVSIRNT-----LLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCK 184

Query: 492 IFALTANPKD-----PSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMP 546
             +     K+             C A N +G   +    I                    
Sbjct: 185 EESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDL------------------ 226

Query: 547 PGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLG 606
                     +  +  K+G    + C+ +       + W  +   +E  + + +      
Sbjct: 227 ---NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTN 283

Query: 607 GYSIEINYL--EAV---DDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAV 661
              I I +    +V   D G + C ++         +A V ++           E  +  
Sbjct: 284 RTMIRILFAFVSSVARNDTGYYTCSSSKHPS----QSALVTIVEKGFINATNSSEDYEID 339

Query: 662 MTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCV 711
             ++    F  +   +P     W    +   P +   L    S+          G Y   
Sbjct: 340 QYEE--FCFSVRFKAYPQIRCTWTFSRKSF-PCEQKGLDNGYSISKFCNHKHQPGEYIFH 396

Query: 712 AKNVMGKAESSTQLTIED 729
           A+N   +      L I  
Sbjct: 397 AENDDAQFTKMFTLNIRS 414

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  189 bits (482), Expect = 1e-52
 Identities = 50/445 (11%), Positives = 111/445 (24%), Gaps = 65/445 (14%)

Query: 505 LGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKI 564
           L    C  +N      S  +  +       ++ +    +L P   +   + E   V+  +
Sbjct: 7   LPVIKCVLINHKNNDSSVGK--SSSYPMVSESPEDLGCALRPQ--SSGTVYEAAAVEVDV 62

Query: 565 GTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWK 624
             S  L+  V  P    S  W  K   +     + +   G+   S+ I  +     GE+ 
Sbjct: 63  SASITLQVLVDAPGNI-SCLWVFKHSSLNCQPHFDLQNRGVV--SMVILKMTETQAGEYL 119

Query: 625 CVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQW 684
               S +         V +          +          +   +  C     P P ++W
Sbjct: 120 LFIQSEATNYTILF-TVSI-----RNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEW 173

Query: 685 FKDNEELKPGDVYQLTGTSS---------LGSYCCVAKNVMGKAESSTQLTIEDIRNHLS 735
              + + +                          C A+N +G+  +              
Sbjct: 174 VLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRL------------ 221

Query: 736 EEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFT-VQVSISPEPKVSWFRDDQQVVESDN 794
                   T +        L      V E        V ++    ++W  +++ + E + 
Sbjct: 222 -------FTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNY 274

Query: 795 VKILKE-----TLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPK 849
            ++         + +    + ++   D   + C ++    QS     + +          
Sbjct: 275 FEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSAL---VTIVEKGFINATN 331

Query: 850 FLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIH---------KIISGED 900
             E+ +    +        +    PQ    W    +                        
Sbjct: 332 SSEDYEID--QYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQ 389

Query: 901 GTCCLGIYTCEAHNCMGTTSSSAAL 925
                G Y   A N     +    L
Sbjct: 390 P----GEYIFHAENDDAQFTKMFTL 410

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  168 bits (426), Expect = 3e-45
 Identities = 61/474 (12%), Positives = 118/474 (24%), Gaps = 106/474 (22%)

Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECK 469
           +  S+  S  +  ++E+        C L              +     +    +++L+  
Sbjct: 20  NDSSVGKSSSYPMVSESPEDLG---CALRPQSS-----GTVYEAAAVEVDVSASITLQVL 71

Query: 470 VMGIPTPQLIWYKDNKKIKAGDIFALTANPK--------DPSSLGTYTCEAVNCMGAAFS 521
           V        +W   +  +     F L               +  G Y     +       
Sbjct: 72  VDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTI 131

Query: 522 TSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPR 581
              V  R                       +          K+     L C     P P 
Sbjct: 132 LFTVSIR---------------------NTLLYTLRRPYFRKMENQDALVCISESVPEP- 169

Query: 582 SIYWY--NKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAA 639
            + W   + +G     +   ++             L  +   + +C A +  G +     
Sbjct: 170 IVEWVLCDSQGESCKEESPAVVKKE-------EKVLHELFGTDIRCCARNELGRECTRLF 222

Query: 640 YVHVLMPKNYRKPRFVESLKAVMTDDGL-VSFECKVV-GFPTPTLQWFKDNEELKPGDVY 697
            + +             +L  +    G  +   CK V       L W  +N+ L+ G+ +
Sbjct: 223 TIDL-------NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYF 275

Query: 698 QLTGTSSL-------------------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEED 738
           +++  S+                    G Y C +         S  +TI           
Sbjct: 276 EMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALVTI----------- 321

Query: 739 KLLLLTNNKAPKFIEGLKSCQ---ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNV 795
                       FI    S +       EEF F+V+    P+ + +W    +        
Sbjct: 322 --------VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQ-- 371

Query: 796 KILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV-PKHYKKP 848
              K       +           E+   A ND  Q      L +    KH+   
Sbjct: 372 ---KGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKHHHHH 422

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  144 bits (365), Expect = 3e-37
 Identities = 45/438 (10%), Positives = 104/438 (23%), Gaps = 65/438 (14%)

Query: 28  NPKDPSSLGTYTCEAVNCMGAAFS----TSRVIARGQ-QSFLDNDDVPFN-RAQG----- 76
           N        +Y   + +      +    +S  +          +  +             
Sbjct: 20  NDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNIS 79

Query: 77  ------DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 130
                    +       +   G   + I ++     G Y +   +E+   T  F +S+  
Sbjct: 80  CLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIR- 138

Query: 131 QVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGN 190
              +   +  R                       + C  +        +           
Sbjct: 139 ---NTLLYTLRRPYFRKMENQ-----------DALVCISESVPEPIVEWVLCDSQGESCK 184

Query: 191 RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 250
                      +   + +    G      A NE G    +                  L 
Sbjct: 185 E----ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDL-----NQTPQTTLP 235

Query: 251 DIAVKVGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGR 307
            + +KVG    +  +         +  + + N  +      +     +      I     
Sbjct: 236 QLFLKVGEPLWIRCKAVHVNHGFGLTWELE-NKALEEGNYFEMS--TYSTNRTMIR---I 289

Query: 308 TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH---DIAVKVG 364
               +  V R+D G Y+ ++S     S     +++         FI   +   D  +   
Sbjct: 290 LFAFVSSVARNDTGYYTCSSSKHPSQSA---LVTIV-----EKGFINATNSSEDYEIDQY 341

Query: 365 TRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLA 424
                 V  ++  +I+  W  + +        +   +G  Y I          G +   A
Sbjct: 342 EEFCFSVRFKAYPQIRCTWTFSRKSFPCE--QKGLDNG--YSISKFCNHKHQPGEYIFHA 397

Query: 425 ENAVGRSHCSCELSVLVP 442
           EN   +      L++   
Sbjct: 398 ENDDAQFTKMFTLNIRSG 415

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  123 bits (309), Expect = 5e-30
 Identities = 44/376 (11%), Positives = 95/376 (25%), Gaps = 68/376 (18%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPK--------DPSSLGTYTCEAVNCMGAAFSTS 53
                  +W   +  +     F L               +  G Y     +         
Sbjct: 74  APGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILF 133

Query: 54  RVIARGQQSF---------LDNDDVPFNRAQGDHPI------FGNRFRAINRDGRTELNI 98
            V  R    +         ++N D     ++   P         +      ++    +  
Sbjct: 134 TVSIRNTLLYTLRRPYFRKMENQDALVCISES-VPEPIVEWVLCDSQGESCKEESPAVVK 192

Query: 99  R---RVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 155
           +    +    G      A NE G    +                  L  + +KVG    +
Sbjct: 193 KEEKVLHELFGTDIRCCARNELGRECTRLFTIDL-----NQTPQTTLPQLFLKVGEPLWI 247

Query: 156 LVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDD 212
             +         +  + + N  +      +     +      I         +  V R+D
Sbjct: 248 RCKAVHVNHGFGLTWELE-NKALEEGNYFEMS--TYSTNRTMIR---ILFAFVSSVARND 301

Query: 213 GGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH---DIAVKVGTRARLLVEIRSP 269
            G Y+ ++S     S     +++         FI   +   D  +         V  ++ 
Sbjct: 302 TGYYTCSSSKHPSQSA---LVTIV-----EKGFINATNSSEDYEIDQYEEFCFSVRFKAY 353

Query: 270 TEIKCQFDLNN-TIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTAS 328
            +I+C +  +  + P   +                 D    ++     +   G Y   A 
Sbjct: 354 PQIRCTWTFSRKSFPCEQKGL---------------DNGYSISKFCNHKHQPGEYIFHAE 398

Query: 329 NESGYSTAKFELSVES 344
           N+    T  F L++ S
Sbjct: 399 NDDAQFTKMFTLNIRS 414

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  121 bits (304), Expect = 3e-29
 Identities = 34/259 (13%), Positives = 70/259 (27%), Gaps = 26/259 (10%)

Query: 700 TGTSSLGSYCCVAKNVM----GKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL 755
           TG   L    CV  N         +SS+   + +     S ED    L   ++   +   
Sbjct: 2   TGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSE-----SPEDLGCAL-RPQSSGTVYEA 55

Query: 756 KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVA 815
            + +  V+      V V         W      +    +  +  +  GV  + I  +   
Sbjct: 56  AAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL--QNRGVVSMVILKMTET 113

Query: 816 DQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQ 875
              E+     ++      +    +++        +               L C    VP+
Sbjct: 114 QAGEYLLFIQSEATNY--TILFTVSI---RNTLLYTLRRPYFRKMENQDALVCISESVPE 168

Query: 876 PTLKWFKDGRELKAGDIHKIISGEDGTCCL-----GIYTCEAHNCMGTTSSSAALLGFED 930
           P ++W     + ++         +     L         C A N +G   +    +    
Sbjct: 169 PIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQ 228

Query: 931 KSQIEKAE----EGKKALI 945
             Q    +     G+   I
Sbjct: 229 TPQTTLPQLFLKVGEPLWI 247

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  197 bits (503), Expect = 2e-55
 Identities = 68/441 (15%), Positives = 139/441 (31%), Gaps = 84/441 (19%)

Query: 434 SCELSVLVPKAYKAPFFTKE--LEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD 491
           S +  +  P     P  TK+   + I+  +  + +EC+  G P P   W ++++      
Sbjct: 8   SIQNELTQP-----PTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAK 62

Query: 492 -------------IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDD 538
                        +    +  +     G Y C A N  G A S                 
Sbjct: 63  DPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNR--------------- 107

Query: 539 VPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLV-PPWPRSIYWY-NKEGVVEASD 596
                L          + ++ V  + G    L+C      P P  I+W  +    +    
Sbjct: 108 ---IRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSP-VIFWMSSSMEPITQDK 163

Query: 597 KYHIMADGLGGYSIEINYLEAVDD-GEWKCVATSSSG----VKQFSAAYVHVLMPKNYRK 651
           +     +G     +  + +   D   ++ C A          K      V        R 
Sbjct: 164 RVSQGHNG----DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERT 219

Query: 652 PRFVESLKA----VMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL-- 705
           P F+         ++     +  EC   G PTP + W+K   +L            +L  
Sbjct: 220 PSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRI 279

Query: 706 --------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKS 757
                   G Y C+A N MG    +  + ++                   AP +++  K+
Sbjct: 280 TNVSEEDSGEYFCLASNKMGSIRHTISVRVKA------------------APYWLDEPKN 321

Query: 758 CQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQ 817
                 E+ +   + + +P+P V W  + + +  +      +       +     +++ +
Sbjct: 322 LILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDT--IIFRDTQISSR 379

Query: 818 AEWKCIATNDFGQSITSCFLK 838
           A ++C  +N+ G  + + F+ 
Sbjct: 380 AVYQCNTSNEHGYLLANAFVS 400

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  189 bits (481), Expect = 1e-52
 Identities = 78/422 (18%), Positives = 148/422 (35%), Gaps = 53/422 (12%)

Query: 339 ELSVESQVPDAPAFIRR-LHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYR 397
           + S+++++   P   ++   D  V       +  E +       HW RN R     K  R
Sbjct: 6   DPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPR 65

Query: 398 ---TQHDGNFYFIDL-SSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKE 453
               +  G                G + C A N  G +  S  + + V  +    +  + 
Sbjct: 66  VSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTAL-SNRIRLQV--SKSPLWPKEN 122

Query: 454 LEAILTEQG-TVSLECKV-MGIPTPQLIWYKDNKKIKA----------GDIFALTANPKD 501
           L+ ++ ++G  ++L+C    G+P+P + W   + +             GD++      +D
Sbjct: 123 LDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQD 182

Query: 502 PSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVK 561
                 Y+C A                   +     +   + + P G A        +  
Sbjct: 183 --MQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTA-------SSQM 233

Query: 562 AKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDG 621
              G   +LEC     P P  I WY K+G    SDK           ++ I  +   D G
Sbjct: 234 VLRGMDLLLECIASGVPTP-DIAWY-KKGGDLPSDKAKF---ENFNKALRITNVSEEDSG 288

Query: 622 EWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPTP 680
           E+ C+A++  G  + +   V V        P +++  K ++   G      C+  G P P
Sbjct: 289 EYFCLASNKMGSIRHTI-SVRVKAA-----PYWLDEPKNLILAPGEDGRLVCRANGNPKP 342

Query: 681 TLQWFKDNEELK--PGDVYQLTGTSSL----------GSYCCVAKNVMGKAESSTQLTIE 728
           T+QW  + E L+  P +  +     ++            Y C   N  G   ++  +++ 
Sbjct: 343 TVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 402

Query: 729 DI 730
           D+
Sbjct: 403 DV 404

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  182 bits (464), Expect = 2e-50
 Identities = 71/411 (17%), Positives = 141/411 (34%), Gaps = 61/411 (14%)

Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGG 607
           P  I  +  ++       + ++EC+    P P S +W  +       +    +      G
Sbjct: 16  PPTITKQSAKDHIVDPRDNILIECEAKGNPAP-SFHWT-RNSRFFNIAKDPRVSMRRRSG 73

Query: 608 YSIEINYLEA----VDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFV-ESLKAVM 662
            ++ I++         +GE++C A +  G    +   + V      + P +  E+L  V+
Sbjct: 74  -TLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQV-----SKSPLWPKENLDPVV 127

Query: 663 TDDGL-VSFECKVV-GFPTPTLQWFKDNEELKPGDVYQLTGTS------------SLGSY 708
             +G  ++ +C    G P+P + W   + E    D     G +                Y
Sbjct: 128 VQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDY 187

Query: 709 CCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFI---EGLKSCQATVNEE 765
            C A+                +       ++         P F+       S       +
Sbjct: 188 SCNARFHFTHTIQQKNPFTLKVLTTRGVAER--------TPSFMYPQGTASSQMVLRGMD 239

Query: 766 FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT 825
                  S  P P ++W++    +  SD  K          L+I  +   D  E+ C+A+
Sbjct: 240 LLLECIASGVPTPDIAWYKKGGDL-PSDKAKF---ENFNKALRITNVSEEDSGEYFCLAS 295

Query: 826 NDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDG 884
           N  G    +  +++        P +L+E K + L+ G    L C+  G P+PT++W  +G
Sbjct: 296 NKMGSIRHTISVRVKAA-----PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNG 350

Query: 885 RELKAGDIHKIISGEDGTCCL----------GIYTCEAHNCMGTTSSSAAL 925
             L++   +        T  +           +Y C   N  G   ++A +
Sbjct: 351 EPLQSAPPNPNREVAGDT--IIFRDTQISSRAVYQCNTSNEHGYLLANAFV 399

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  154 bits (391), Expect = 8e-41
 Identities = 75/425 (17%), Positives = 134/425 (31%), Gaps = 55/425 (12%)

Query: 125 ELSVESQVPDAPAFIRR-LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG 183
           + S+++++   P   ++   D  V       +  E +        +  N+     F    
Sbjct: 6   DPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSR---FFNIAK 62

Query: 184 DHPIFGNRFRAINRDG--RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 241
           D      R     R G    +        +  G Y   A N+ G + +     +  QV  
Sbjct: 63  DP-----RVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSN---RIRLQVSK 114

Query: 242 APAFIRR-LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIP-FSFRAQGDHPIFGNRF 299
           +P + +  L  + V+ G    L          +C        P   + +    PI  ++ 
Sbjct: 115 SPLWPKENLDPVVVQEGAPLTL----------QCNPPPGLPSPVIFWMSSSMEPITQDKR 164

Query: 300 RAINRDGRTELNIRRVRR-DDGGRYSVTASNESGYST---AKFELSVESQVP---DAPAF 352
            +   +G  +L    V   D    YS  A     ++      F L V +        P+F
Sbjct: 165 VSQGHNG--DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSF 222

Query: 353 IR---RLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL 409
           +          V  G    L           I WY+    L  +K      +        
Sbjct: 223 MYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRI--- 279

Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLEC 468
           ++VS  DSG + CLA N +G    +  + V        P++  E + ++   G    L C
Sbjct: 280 TNVSEEDSGEYFCLASNKMGSIRHTISVRVKAA-----PYWLDEPKNLILAPGEDGRLVC 334

Query: 469 KVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD--------PSSLGTYTCEAVNCMGAAF 520
           +  G P P + W  + + +++           D         SS   Y C   N  G   
Sbjct: 335 RANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLL 394

Query: 521 STSRV 525
           + + V
Sbjct: 395 ANAFV 399

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  136 bits (343), Expect = 2e-34
 Identities = 64/380 (16%), Positives = 120/380 (31%), Gaps = 37/380 (9%)

Query: 67  DDVPFNRAQGDHPIFGNRFRAINRDG--RTELNIRRVRRDDGGRYSVTASNESGYSTAKF 124
           +   FN A+        R     R G    +        +  G Y   A N+ G + +  
Sbjct: 54  NSRFFNIAKDP------RVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSN- 106

Query: 125 ELSVESQVPDAPAFIRR-LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIP-FSFRAQ 182
              +  QV  +P + +  L  + V+ G    L          +C        P   + + 
Sbjct: 107 --RIRLQVSKSPLWPKENLDPVVVQEGAPLTL----------QCNPPPGLPSPVIFWMSS 154

Query: 183 GDHPIFGNRFRAINRDGRTELNIRRVRR-DDGGRYSVTASNESGYSTAKFELSVESQVPD 241
              PI  ++  +   +G  +L    V   D    YS  A       T + +     +V  
Sbjct: 155 SMEPITQDKRVSQGHNG--DLYFSNVMLQDMQTDYSCNARFHFT-HTIQQKNPFTLKVLT 211

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRA 301
                 R        GT +  +V       ++C      T   ++  +    +  ++ + 
Sbjct: 212 TRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWY-KKGGDLPSDKAKF 270

Query: 302 INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAV 361
            N +    L I  V  +D G Y   ASN+ G       + V++    AP ++    ++ +
Sbjct: 271 ENFNKA--LRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA----APYWLDEPKNLIL 324

Query: 362 KVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI-YRTQHDGNFYFIDLSSVSLFDSGRW 420
             G   RL+       +  + W  N   L+        +  G+          +     +
Sbjct: 325 APGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIF--RDTQISSRAVY 382

Query: 421 TCLAENAVGRSHCSCELSVL 440
            C   N  G    +  +SVL
Sbjct: 383 QCNTSNEHGYLLANAFVSVL 402

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  124 bits (314), Expect = 9e-31
 Identities = 65/391 (16%), Positives = 110/391 (28%), Gaps = 78/391 (19%)

Query: 2   GIPTPQLIWYKDNKKIKAGD-------------IFALTANPKDPSSLGTYTCEAVNCMGA 48
           G P P   W ++++                   +    +  +     G Y C A N  G 
Sbjct: 43  GNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGT 102

Query: 49  AFSTS-RVIARGQQSFLDNDDVPFNRAQGD------HPIFG----------NRFRAINRD 91
           A S   R+       +   +  P    +G       +P  G          +    I +D
Sbjct: 103 ALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQD 162

Query: 92  GRTE------LNIRRVRR-DDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 144
            R        L    V   D    YS  A       T + +     +V        R   
Sbjct: 163 KRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFT-HTIQQKNPFTLKVLTTRGVAERTPS 221

Query: 145 IAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELN 204
                GT +  +V       ++C      T   ++  +    +  ++ +  N +    L 
Sbjct: 222 FMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWY-KKGGDLPSDKAKFENFNKA--LR 278

Query: 205 IRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLV 264
           I  V  +D G Y   ASN+ G       + V++    AP ++    ++ +  G   RL  
Sbjct: 279 ITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA----APYWLDEPKNLILAPGEDGRL-- 332

Query: 265 EIRSPTEIKCQFDLNNTIPFSFRAQGD-----------HPIFGNRFRAINRDGRTELNIR 313
                    C+            A G+            P+               +  R
Sbjct: 333 --------VCR------------ANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFR 372

Query: 314 RVRRDDGGRYSVTASNESGYSTAKFELSVES 344
             +      Y    SNE GY  A   +SV  
Sbjct: 373 DTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  100 bits (250), Expect = 2e-22
 Identities = 41/241 (17%), Positives = 77/241 (31%), Gaps = 25/241 (10%)

Query: 738 DKLLLLTNNKAPKFI-EGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVK 796
           D  +     + P    +  K       +      +   +P P   W R+ +    + + +
Sbjct: 6   DPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPR 65

Query: 797 ILKETLG---VCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEE 853
           +         V   +        + E++C A N FG +  S  ++L V    K P + +E
Sbjct: 66  VSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFG-TALSNRIRLQV---SKSPLWPKE 121

Query: 854 LKAVLS--EGGAVNLECKVI-GVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----- 905
               +   EG  + L+C    G+P P + W     E    D  ++  G +G   L     
Sbjct: 122 NLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQD-KRVSQGHNGD--LYFSNV 178

Query: 906 ------GIYTCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALIVKDPSLSTIQEEGT 959
                   Y+C A      T         +  +    AE     +  +  + S +   G 
Sbjct: 179 MLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGM 238

Query: 960 S 960
            
Sbjct: 239 D 239

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  197 bits (501), Expect = 2e-55
 Identities = 73/411 (17%), Positives = 124/411 (30%), Gaps = 59/411 (14%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGGY 608
            P+   +   V  +     +LEC +          W  K+G      +    +       
Sbjct: 6   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWK-KDGKSYNWQEHNAALR--KDEG 62

Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGL- 667
           S+     +A D+G ++C A + +GV                               +G  
Sbjct: 63  SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYL-----IASPAKTHEKTPIEGRP 117

Query: 668 VSFECKVV-GFPTPTLQWFKDNEELKP----------------GDVY----QLTGTSSLG 706
              +C +   +P P + W K      P                G++Y         S + 
Sbjct: 118 FQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIY 177

Query: 707 SYCCVAKNVMGKAES-STQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEE 765
            Y C AKN     E    +  I+ +    S             P      K   A   + 
Sbjct: 178 KYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKG--------EPVPQYVSKDMMAKAGDV 229

Query: 766 FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKET-LGVCHLKIHALEVADQAEWKCIA 824
                    +P    ++F++ + V  +   +I +        L        D+  + C  
Sbjct: 230 TMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEV 289

Query: 825 TNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVL--SEGGAVNLECKVIGVPQPTLKWFK 882
            N  G       LKL V      PK+ ++ + V+   +G  V + CKV G+P P + W  
Sbjct: 290 DNGVG-KPQKHSLKLTV---VSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSH 345

Query: 883 DGRELKAGDIHK-----IISG---EDGTCCLGIYTCEAHNCMGTTSSSAAL 925
           + + L  G         +I G    D     G Y C A N  G       +
Sbjct: 346 NAKPLSGGRATVTDSGLVIKGVKNGDK----GYYGCRATNEHGDKYFETLV 392

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  189 bits (481), Expect = 9e-53
 Identities = 76/446 (17%), Positives = 130/446 (29%), Gaps = 93/446 (20%)

Query: 437 LSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLI-WYKDNKKIKAGDIFA 494
           L V        P    +   +L  +     LEC + G        W KD K     +  A
Sbjct: 1   LPVDKY-----PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNA 55

Query: 495 LTANPK--------DPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMP 546
                +          S  G Y C A    G A  +SRVI                S   
Sbjct: 56  ALRKDEGSLVFLRPQASDEGHYQCFAETPAGVA--SSRVI----------------SFRK 97

Query: 547 PGPAPIFIKEVENVKAKIGTSAILECQVLV-PPWPRSIYWY-------NKEGVVEASDKY 598
                    +        G    L+C +    P P  I W            V +   + 
Sbjct: 98  TYL-IASPAKTHEKTPIEGRPFQLDCVLPNAYPKP-LITWKKRLSGADPNADVTDFDRRI 155

Query: 599 HIMADG-LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLM-----PKNYRKP 652
               DG L  Y   +   +  D  ++ C A +++  ++       +            +P
Sbjct: 156 TAGPDGNL--YFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEP 213

Query: 653 RFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDV-----YQLTGTSSL- 705
                 K +M   G +    C     P     +FK+ +++          +  T    L 
Sbjct: 214 VPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLL 273

Query: 706 ---------GSYCCVAKNVMGKAES-STQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL 755
                    G Y C   N +GK +  S +LT+                    APK+ +  
Sbjct: 274 FKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS------------------APKYEQKP 315

Query: 756 KSCQ-ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEV 814
           +        ++     +V+  P P V W  + + +       +    L      I  ++ 
Sbjct: 316 EKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL-SGGRATVTDSGL-----VIKGVKN 369

Query: 815 ADQAEWKCIATNDFGQSITSCFLKLN 840
            D+  + C ATN+ G       +++N
Sbjct: 370 GDKGYYGCRATNEHGDKYFETLVQVN 395

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  162 bits (410), Expect = 3e-43
 Identities = 72/417 (17%), Positives = 127/417 (30%), Gaps = 50/417 (11%)

Query: 132 VPDAPAFIRRLHDIAVKVGTRARLLVEIR---SPTEIKCQFDLNNTIPFSFRAQGDHPIF 188
           V   P    +  ++  +      L   I       +   + D                  
Sbjct: 3   VDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKD-------------GKSYN 49

Query: 189 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR 248
                A  R     L   R +  D G Y   A   +G ++++    +  +     A   +
Sbjct: 50  WQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSR---VISFRKTYLIASPAK 106

Query: 249 LHDIAVKVGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRD 305
            H+     G   +L   + +      I  +  L+   P       D   F  R      D
Sbjct: 107 THEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADP-----NADVTDFDRRIT-AGPD 160

Query: 306 GRTE-LNIRRVRRDDGGRYSVTASNESG-------YSTAKFELSVESQVPDAPAFIRRLH 357
           G      + +    D  +Y  TA N +            K      S     P       
Sbjct: 161 GNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSK 220

Query: 358 DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL--SSVSLF 415
           D+  K G    +     S      ++++N + +  N   R           L   +    
Sbjct: 221 DMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPE 280

Query: 416 DSGRWTCLAENAVGR-SHCSCELSVLVPKAYKAPFFTKELEAILT--EQGTVSLECKVMG 472
           D G +TC  +N VG+    S +L+V+       P + ++ E ++   +   V++ CKV G
Sbjct: 281 DEGVYTCEVDNGVGKPQKHSLKLTVVSA-----PKYEQKPEKVIVVKQGQDVTIPCKVTG 335

Query: 473 IPTPQLIWYKDNKKIKAGDIF----ALTANPKDPSSLGTYTCEAVNCMGAAFSTSRV 525
           +P P ++W  + K +  G        L          G Y C A N  G  +  + V
Sbjct: 336 LPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLV 392

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  142 bits (359), Expect = 1e-36
 Identities = 44/316 (13%), Positives = 84/316 (26%), Gaps = 56/316 (17%)

Query: 650 RKPRFVESLKAVMTDDGL-VSFECKVVGFPTPT-LQWFKDNEELKPGD--VYQLTGTSSL 705
           + P   +    V+  +      EC + G        W KD +     +          SL
Sbjct: 5   KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSL 64

Query: 706 ----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL 755
                     G Y C A+   G A S                   +              
Sbjct: 65  VFLRPQASDEGHYQCFAETPAGVASSRV-----------------ISFRKTYLIASPAKT 107

Query: 756 KSCQATVNEEFKFTVQVSIS-PEPKVSWFRDDQQVVESDNVKILKETLGVCH------LK 808
                     F+    +  + P+P ++W +       + +V      +            
Sbjct: 108 HEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTI 167

Query: 809 IHALEVADQAEWKCIATNDFGQSI-TSCFLKLNV-----PKHYKKPKFLEELK-AVLSEG 861
           +   +V+D  ++ C A N            ++         +  +P      K  +   G
Sbjct: 168 VTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAG 227

Query: 862 GAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL-----------GIYTC 910
               + C     P     +FK+G+++      +I      +              G+YTC
Sbjct: 228 DVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTC 287

Query: 911 EAHNCMGTTSSSAALL 926
           E  N +G     +  L
Sbjct: 288 EVDNGVGKPQKHSLKL 303

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  136 bits (344), Expect = 1e-34
 Identities = 64/379 (16%), Positives = 111/379 (29%), Gaps = 50/379 (13%)

Query: 82  GNRFRAINRDGRTE-----LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 136
           G  +     +         L   R +  D G Y   A   +G ++++    +  +     
Sbjct: 45  GKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSR---VISFRKTYLI 101

Query: 137 AFIRRLHDIAVKVGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 193
           A   + H+     G   +L   + +      I  +  L+   P       D   F  R  
Sbjct: 102 ASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADP-----NADVTDFDRRIT 156

Query: 194 AINRDGRTE-LNIRRVRRDDGGRYSVTASNESG-------YSTAKFELSVESQVPDAPAF 245
               DG      + +    D  +Y  TA N +            K      S     P  
Sbjct: 157 -AGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVP 215

Query: 246 IRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAIN 303
                D+  K G    +      +P        +    +  +           +R    N
Sbjct: 216 QYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKN-GKDVNGNPE---------DRITRHN 265

Query: 304 RDGRTELNIRRVRRDDGGRYSVTASNESGY-STAKFELSVESQVPDAPAFIRRLHD-IAV 361
           R     L  +    +D G Y+    N  G       +L+V S    AP + ++    I V
Sbjct: 266 RTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS----APKYEQKPEKVIVV 321

Query: 362 KVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRW 420
           K G    +  ++   P    + W  N + L   +   T  D     + +  V   D G +
Sbjct: 322 KQGQDVTIPCKVTGLPA-PNVVWSHNAKPLSGGR--ATVTDSG---LVIKGVKNGDKGYY 375

Query: 421 TCLAENAVGRSHCSCELSV 439
            C A N  G  +    + V
Sbjct: 376 GCRATNEHGDKYFETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  103 bits (259), Expect = 1e-23
 Identities = 66/404 (16%), Positives = 98/404 (24%), Gaps = 104/404 (25%)

Query: 2   GIPTPQLI-WYKDNKKIKAGDIFALTANPK--------DPSSLGTYTCEAVNCMGAAFS- 51
           G        W KD K     +  A     +          S  G Y C A    G A S 
Sbjct: 32  GNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSR 91

Query: 52  TSRVIARGQQSFLD---------NDDVPFN---------------------RAQGDHPIF 81
                     +                  +                         D   F
Sbjct: 92  VISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDF 151

Query: 82  GNRFRAINRDGRTE-LNIRRVRRDDGGRYSVTASNESG-------YSTAKFELSVESQVP 133
             R      DG      + +    D  +Y  TA N +            K      S   
Sbjct: 152 DRRIT-AGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYK 210

Query: 134 DAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNR 191
             P       D+  K G    +      +P        +    +  +           +R
Sbjct: 211 GEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKN-GKDVNGNPE---------DR 260

Query: 192 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGY-STAKFELSVESQVPDAPAFIRRLH 250
               NR     L  +    +D G Y+    N  G       +L+V S    AP + ++  
Sbjct: 261 ITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS----APKYEQKPE 316

Query: 251 D-IAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD-----------HPIFGNR 298
             I VK G    +           C+              G             P+ G R
Sbjct: 317 KVIVVKQGQDVTI----------PCK------------VTGLPAPNVVWSHNAKPLSGGR 354

Query: 299 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
              +   G   L I+ V+  D G Y   A+NE G    +  + V
Sbjct: 355 AT-VTDSG---LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 72.6 bits (178), Expect = 2e-13
 Identities = 25/123 (20%), Positives = 40/123 (32%), Gaps = 19/123 (15%)

Query: 839 LNVPKHYKKPKFLEELK-AVLSEGGAVNLECKVIGVPQPT-LKWFKDGRELKAGDIHKII 896
           L V K    P   ++    +  E     LEC + G  Q     W KDG+     + +  +
Sbjct: 1   LPVDK---YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAAL 57

Query: 897 SGEDGTCCL--------GIYTCEAHNCMGTTSSSAALL------GFEDKSQIEKAEEGKK 942
             ++G+           G Y C A    G  SS               K+  +   EG+ 
Sbjct: 58  RKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRP 117

Query: 943 ALI 945
             +
Sbjct: 118 FQL 120

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  193 bits (493), Expect = 2e-55
 Identities = 68/299 (22%), Positives = 114/299 (38%), Gaps = 41/299 (13%)

Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT----GTSSL 705
            PRF++  K  +   G + SF C+  G P P + W K  +++       +       + L
Sbjct: 6   PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65

Query: 706 -----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEG 754
                        Y CVA+N +G+     +LT+                  +  P    G
Sbjct: 66  RIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQ-----------LPSGFPNIDMG 114

Query: 755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEV 814
            +                S +P+P+++WF+D   V  S +   +K+ L    L+I + E 
Sbjct: 115 PQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ-LRSGALQIESSEE 173

Query: 815 ADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK-AVLSEGGAVNLECKVIGV 873
            DQ +++C+ATN  G    S    L V      P+F        +  GG VN+ C  +G 
Sbjct: 174 TDQGKYECVATNSAG-VRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGS 232

Query: 874 PQPTLKWFKDGRELKAGDIHKIISG-------EDGTCCLGIYTCEAHNCMGTTSSSAAL 925
           P P +KW +   +L   D   +          +D       YTC A + +G   + A +
Sbjct: 233 PMPYVKWMQGAEDLTPEDDMPVGRNVLELTDVKDS----ANYTCVAMSSLGVIEAVAQI 287

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  179 bits (455), Expect = 3e-50
 Identities = 71/305 (23%), Positives = 122/305 (40%), Gaps = 39/305 (12%)

Query: 446 KAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSS 504
           + P F KE +  +   G   S  C+  G P P++ W K  KK+ +     +  +    + 
Sbjct: 5   EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64

Query: 505 L-----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIF 553
           L             Y C A N +G     +++             V     +P G  P  
Sbjct: 65  LRIQPLRTPRDENVYECVAQNSVGEITVHAKLT------------VLREDQLPSGF-PNI 111

Query: 554 IKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEIN 613
               +    +   +A + C     P P  I W+ K+ +       +     L   +++I 
Sbjct: 112 DMGPQLKVVERTRTATMLCAASGNPDP-EITWF-KDFLPVDPSASNGRIKQLRSGALQIE 169

Query: 614 YLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLK-AVMTDDGLVSFEC 672
             E  D G+++CVAT+S+GV+  S A ++V +      PRF        +   G V+  C
Sbjct: 170 SSEETDQGKYECVATNSAGVRYSSPANLYVRVQNV--APRFSILPMSHEIMPGGNVNITC 227

Query: 673 KVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL--------GSYCCVAKNVMGKAESSTQ 724
             VG P P ++W +  E+L P D   + G + L         +Y CVA + +G  E+  Q
Sbjct: 228 VAVGSPMPYVKWMQGAEDLTPEDDMPV-GRNVLELTDVKDSANYTCVAMSSLGVIEAVAQ 286

Query: 725 LTIED 729
           +T++ 
Sbjct: 287 ITVKS 291

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  163 bits (413), Expect = 1e-44
 Identities = 66/309 (21%), Positives = 100/309 (32%), Gaps = 38/309 (12%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
            P FIKE ++     G  A   CQ    P P  + W  K   V +     I  D   G  
Sbjct: 6   PPRFIKEPKDQIGVSGGVASFVCQATGDPKP-RVTWNKKGKKVNSQRFETIEFDESAGAV 64

Query: 610 IEINYLEAVDD-GEWKCVATSSSGVKQFSAA-YVHVLMPKNYRKPRFVESLKAVMTDDG- 666
           + I  L    D   ++CVA +S G     A   V          P      +  + +   
Sbjct: 65  LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTR 124

Query: 667 LVSFECKVVGFPTPTLQWFKDNEELKPGDV---YQLTGTSSL----------GSYCCVAK 713
             +  C   G P P + WFKD   + P       +   + +L          G Y CVA 
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVAT 184

Query: 714 NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVS 773
           N  G   SS                 L +   N AP+F     S +         T    
Sbjct: 185 NSAGVRYSSPA--------------NLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAV 230

Query: 774 ISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT 833
            SP P V W +  + +   D++ + +         +   +V D A + C+A +  G    
Sbjct: 231 GSPMPYVKWMQGAEDLTPEDDMPVGR-------NVLELTDVKDSANYTCVAMSSLGVIEA 283

Query: 834 SCFLKLNVP 842
              + +   
Sbjct: 284 VAQITVKSL 292

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  148 bits (376), Expect = 9e-40
 Identities = 59/309 (19%), Positives = 99/309 (32%), Gaps = 50/309 (16%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD---------- 291
            P FI+   D     G  A             CQ            A GD          
Sbjct: 6   PPRFIKEPKDQIGVSGGVASF----------VCQ------------ATGDPKPRVTWNKK 43

Query: 292 -HPIFGNRFRAI--NRDGRTELNIRRVRR-DDGGRYSVTASNESGYSTAKFELSVES--- 344
              +   RF  I  +      L I+ +R   D   Y   A N  G  T   +L+V     
Sbjct: 44  GKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQ 103

Query: 345 QVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEE---NKIYRTQHD 401
                P          V+    A +L       + +I W+++   ++    N   +    
Sbjct: 104 LPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRS 163

Query: 402 GNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQ 461
           G        S    D G++ C+A N+ G    S   ++ V     AP F+    +     
Sbjct: 164 GALQI---ESSEETDQGKYECVATNSAG-VRYSSPANLYVRVQNVAPRFSILPMSHEIMP 219

Query: 462 G-TVSLECKVMGIPTPQLIWYKDNKKIKAGD---IFALTANPKDPSSLGTYTCEAVNCMG 517
           G  V++ C  +G P P + W +  + +   D   +        D      YTC A++ +G
Sbjct: 220 GGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDVKDSANYTCVAMSSLG 279

Query: 518 AAFSTSRVI 526
              + +++ 
Sbjct: 280 VIEAVAQIT 288

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  129 bits (325), Expect = 5e-33
 Identities = 64/345 (18%), Positives = 96/345 (27%), Gaps = 74/345 (21%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD---------- 184
            P FI+   D     G  A             CQ            A GD          
Sbjct: 6   PPRFIKEPKDQIGVSGGVASF----------VCQ------------ATGDPKPRVTWNKK 43

Query: 185 -HPIFGNRFRAI--NRDGRTELNIRRVRR-DDGGRYSVTASNESGYSTAKFELSVES--- 237
              +   RF  I  +      L I+ +R   D   Y   A N  G  T   +L+V     
Sbjct: 44  GKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQ 103

Query: 238 QVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF 295
                P          V+    A +L     +P  EI    D               P+ 
Sbjct: 104 LPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKD-------------FLPVD 150

Query: 296 -GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGY---STAKFELSVESQVPDAPA 351
                  I +     L I      D G+Y   A+N +G    S A   + V++    AP 
Sbjct: 151 PSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNV---APR 207

Query: 352 FIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLS 410
           F        +  G    +      SP    + W +    L            N     L 
Sbjct: 208 FSILPMSHEIMPGGNVNITCVAVGSPM-PYVKWMQGAEDLTPED--DMPVGRNV----LE 260

Query: 411 SVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELE 455
              + DS  +TC+A +++G      +++V        P    +  
Sbjct: 261 LTDVKDSANYTCVAMSSLGVIEAVAQITVKSL-----PKAGTKHH 300

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  126 bits (317), Expect = 5e-32
 Identities = 44/197 (22%), Positives = 70/197 (35%), Gaps = 15/197 (7%)

Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLG 803
           T  + P+FI+  K           F  Q +  P+P+V+W +  ++V       I  +   
Sbjct: 2   TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61

Query: 804 VCHLKIHALEVA-DQAEWKCIATNDFGQSITSCFLKLNVPKHYKK--PKFLEELK-AVLS 859
              L+I  L    D+  ++C+A N  G+      L +          P      +  V+ 
Sbjct: 62  GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121

Query: 860 EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYT 909
                 + C   G P P + WFKD   +     +  I  +  +  L          G Y 
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIK-QLRSGALQIESSEETDQGKYE 180

Query: 910 CEAHNCMGTTSSSAALL 926
           C A N  G   SS A L
Sbjct: 181 CVATNSAGVRYSSPANL 197

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  103 bits (258), Expect = 4e-24
 Identities = 50/300 (16%), Positives = 79/300 (26%), Gaps = 60/300 (20%)

Query: 77  DHPIFGNRFRAI--NRDGRTELNIRRVRR-DDGGRYSVTASNESGYSTAKFELSVES--- 130
              +   RF  I  +      L I+ +R   D   Y   A N  G  T   +L+V     
Sbjct: 44  GKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQ 103

Query: 131 QVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF 188
                P          V+    A +L     +P  EI    D               P+ 
Sbjct: 104 LPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKD-------------FLPVD 150

Query: 189 -GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGY---STAKFELSVESQVPDAPA 244
                  I +     L I      D G+Y   A+N +G    S A   + V++    AP 
Sbjct: 151 PSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNV---APR 207

Query: 245 FIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF------GNR 298
           F        +  G    +           C             A G    +         
Sbjct: 208 FSILPMSHEIMPGGNVNI----------TC------------VAVGSPMPYVKWMQGAED 245

Query: 299 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 358
               +        +      D   Y+  A +  G   A  +++V+      P    + H 
Sbjct: 246 LTPEDDMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVK----SLPKAGTKHHH 301

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 96.8 bits (241), Expect = 6e-22
 Identities = 44/299 (14%), Positives = 77/299 (25%), Gaps = 78/299 (26%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL-----------GTYTCEAVNCMGAAF 50
           G P P++ W K  KK+ +     +  +    + L             Y C A N +G   
Sbjct: 32  GDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEIT 91

Query: 51  STSRV-------IARGQQSFL---------DNDDVPFN-RAQG-----------DHPIF- 81
             +++       +  G  +                     A G             P+  
Sbjct: 92  VHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDP 151

Query: 82  GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGY---STAKFELSVESQVPDAPAF 138
                 I +     L I      D G+Y   A+N +G    S A   + V++    AP F
Sbjct: 152 SASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNV---APRF 208

Query: 139 IRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF------GNRF 192
                   +  G    +           C             A G    +          
Sbjct: 209 SILPMSHEIMPGGNVNI----------TC------------VAVGSPMPYVKWMQGAEDL 246

Query: 193 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 251
              +        +      D   Y+  A +  G   A  +++V+      P    + H 
Sbjct: 247 TPEDDMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVK----SLPKAGTKHHH 301

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 79.1 bits (195), Expect = 5e-16
 Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 21/128 (16%)

Query: 846 KKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC 904
           + P+F++E K  +   GG  +  C+  G P+P + W K G+++ +     I   E     
Sbjct: 5   EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64

Query: 905 L-----------GIYTCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKAL--IVKDPSL 951
           L            +Y C A N +G  +  A L        + + ++       I   P L
Sbjct: 65  LRIQPLRTPRDENVYECVAQNSVGEITVHAKL-------TVLREDQLPSGFPNIDMGPQL 117

Query: 952 STIQEEGT 959
             ++   T
Sbjct: 118 KVVERTRT 125

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  193 bits (493), Expect = 2e-54
 Identities = 80/425 (18%), Positives = 134/425 (31%), Gaps = 82/425 (19%)

Query: 447 APFFTKELEAILTEQG----TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALT------ 496
            P F ++    L  +G     V+L C+    P     W  +  ++K G            
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63

Query: 497 --ANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFI 554
             +NP      G+Y C A N  G   S                     SL          
Sbjct: 64  VISNPVKAKDAGSYQCVATNARGTVVSREA------------------SLRFGFLQEFSA 105

Query: 555 KEVENVKAKIGTSAILECQVLV-PPWPRSIYWYNKEG---VVEASDKYHIMADGLGGYSI 610
           +E + VK   G   +  C      P   S  W   E    +     ++     G    ++
Sbjct: 106 EERDPVKITEGWGVMFTCSPPPHYPAL-SYRWLLNEFPNFIPADGRRFVSQTTG----NL 160

Query: 611 EINYLEAVDDGEWKCVATSSSGVKQFSAA------YVHVLMPKNYRKPRFVESLKAVMTD 664
            I   EA D G + C ATS       S         +     + Y      +        
Sbjct: 161 YIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYAL 220

Query: 665 DG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCVAK 713
            G +V+ EC   G P P ++W K +          L+    L          G+Y C A+
Sbjct: 221 TGQMVTLECFAFGNPVPQIKWRKLDGSQTSK---WLSSEPLLHIQNVDFEDEGTYECEAE 277

Query: 714 NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVS 773
           N+ G+     ++ I                     P +++ +   +A +  + +++   S
Sbjct: 278 NIKGRDTYQGRIIIHA------------------QPDWLDVITDTEADIGSDLRWSCVAS 319

Query: 774 ISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT 833
             P P V W RD Q +   + +++    L     +   L + D   ++C+A N  G    
Sbjct: 320 GKPRPAVRWLRDGQPLASQNRIEVSGGEL-----RFSKLVLEDSGMYQCVAENKHGTVYA 374

Query: 834 SCFLK 838
           S  L 
Sbjct: 375 SAELT 379

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  180 bits (457), Expect = 1e-49
 Identities = 79/408 (19%), Positives = 138/408 (33%), Gaps = 58/408 (14%)

Query: 349 APAFIRRLHDIAVKVGT---RARLLVEIRSPTEIKIHWYRNDRKLEENKIYR-TQHDGNF 404
            P F  +        G+   +  L    R+       W  N  +L+     R     G+ 
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63

Query: 405 YFIDLSSVSLFDSGRWTCLAENAVG--RSHCSCELSVLVPKAYKAPFFTKELEAILTEQG 462
                + V   D+G + C+A NA G   S         +   +   F  +E + +   +G
Sbjct: 64  VIS--NPVKAKDAGSYQCVATNARGTVVSR-----EASLRFGFLQEFSAEERDPVKITEG 116

Query: 463 -TVSLECKV-MGIPTPQLIWYKDNKKI---KAGDIFALTANPK------DPSSLGTYTCE 511
             V   C      P     W  +         G  F             + S LG Y+C 
Sbjct: 117 WGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCF 176

Query: 512 AVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILE 571
           A + +     T  V ++  Q  L  +D             I  K   +  A  G    LE
Sbjct: 177 ATSHIDFI--TKSVFSKFSQLSLAAEDAR------QYAPSIKAKFPADTYALTGQMVTLE 228

Query: 572 CQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSS 631
           C     P P  I W  K     +     + ++      + I  ++  D+G ++C A +  
Sbjct: 229 CFAFGNPVP-QIKWR-KLD--GSQTSKWLSSEP----LLHIQNVDFEDEGTYECEAENIK 280

Query: 632 GVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEE 690
           G +      + +        P +++ +     D G  + + C   G P P ++W +D + 
Sbjct: 281 G-RDTYQGRIIIHAQ-----PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQP 334

Query: 691 LKPGDVYQLTGTSSL----------GSYCCVAKNVMGKAESSTQLTIE 728
           L   +  +++G   L          G Y CVA+N  G   +S +LT++
Sbjct: 335 LASQNRIEVSG-GELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  173 bits (440), Expect = 2e-47
 Identities = 74/406 (18%), Positives = 136/406 (33%), Gaps = 61/406 (15%)

Query: 550 APIFIKEVENVKAKIGTS---AILECQVLVPPWPRSIYWYNKEG--VVEASDKYHIMADG 604
            P+F ++  +     G++     L C+    P   +  W    G  +    D  + +  G
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPA-TYRWK-MNGTELKMGPDSRYRLVAG 61

Query: 605 LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTD 664
                I  N ++A D G ++CVAT++ G      A +       + +    E    V   
Sbjct: 62  --DLVI-SNPVKAKDAGSYQCVATNARGTVVSREASLRF----GFLQEFSAEERDPVKIT 114

Query: 665 DGL-VSFECKVV-GFPTPTLQWFKDNEELKP---GDVYQLTGTSSL----------GSYC 709
           +G  V F C     +P  + +W  +         G  +    T +L          G+Y 
Sbjct: 115 EGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYS 174

Query: 710 CVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFT 769
           C A + +     S       +     +                +      A   +     
Sbjct: 175 CFATSHIDFITKSVFSKFSQLSLAAEDA------RQYAPSIKAKFPADTYALTGQMVTLE 228

Query: 770 VQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFG 829
                +P P++ W + D            K       L I  ++  D+  ++C A N  G
Sbjct: 229 CFAFGNPVPQIKWRKLDGSQ-------TSKWLSSEPLLHIQNVDFEDEGTYECEAENIKG 281

Query: 830 QSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELK 888
           +      + ++       P +L+ +       G  +   C   G P+P ++W +DG+ L 
Sbjct: 282 RDTYQGRIIIHAQ-----PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLA 336

Query: 889 AGDIHKIISG---------EDGTCCLGIYTCEAHNCMGTTSSSAAL 925
           + +  ++  G         ED     G+Y C A N  GT  +SA L
Sbjct: 337 SQNRIEVSGGELRFSKLVLEDS----GMYQCVAENKHGTVYASAEL 378

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  144 bits (364), Expect = 2e-37
 Identities = 64/410 (15%), Positives = 117/410 (28%), Gaps = 54/410 (13%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRA 194
            P F  +        G+             + C+   N    + ++  G     G   R 
Sbjct: 4   GPVFEEQPAHTLFPEGSA-------EEKVTLTCRARANPPATYRWKMNGTELKMGPDSRY 56

Query: 195 INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR-LHDIA 253
               G   +    V+  D G Y   A+N  G   ++       +      F       + 
Sbjct: 57  RLVAG-DLVISNPVKAKDAGSYQCVATNARGTVVSR---EASLRFGFLQEFSAEERDPVK 112

Query: 254 VKVGTRARLLVEIRSPTEIKCQFDLNN---TIPFSFRAQGDHPIFGNRFRAINRDGRTEL 310
           +  G                C    +    +  +      +      R       G   L
Sbjct: 113 ITEGWGVMF----------TCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG--NL 160

Query: 311 NIRRVRRDDGGRYSVTASNESGYST-------AKFELSVESQVPDAPAFI-RRLHDIAVK 362
            I +    D G YS  A++   + T       ++  L+ E     AP+   +   D    
Sbjct: 161 YIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYAL 220

Query: 363 VGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWT 421
            G    L      +P   +I W + D             +   +     +V   D G + 
Sbjct: 221 TGQMVTLECFAFGNPV-PQIKWRKLDGSQ---TSKWLSSEPLLHI---QNVDFEDEGTYE 273

Query: 422 CLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIW 480
           C AEN  GR      + +        P +   +     + G  +   C   G P P + W
Sbjct: 274 CEAENIKGRDTYQGRIIIHAQ-----PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRW 328

Query: 481 YKDNKKIKAGDIF-----ALTANPKDPSSLGTYTCEAVNCMGAAFSTSRV 525
            +D + + + +        L  +       G Y C A N  G  ++++ +
Sbjct: 329 LRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAEL 378

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  129 bits (327), Expect = 1e-32
 Identities = 67/393 (17%), Positives = 113/393 (28%), Gaps = 74/393 (18%)

Query: 67  DDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFEL 126
           +                  R     G   +    V+  D G Y   A+N  G   ++   
Sbjct: 44  NGTELKMGPDS--------RYRLVAG-DLVISNPVKAKDAGSYQCVATNARGTVVSR--- 91

Query: 127 SVESQVPDAPAFIRR-LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNN---TIPFSFRAQ 182
               +      F       + +  G                C    +    +  +     
Sbjct: 92  EASLRFGFLQEFSAEERDPVKITEGWGVMF----------TCSPPPHYPALSYRWLLNEF 141

Query: 183 GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYST-------AKFELSV 235
            +      R       G   L I +    D G YS  A++   + T       ++  L+ 
Sbjct: 142 PNFIPADGRRFVSQTTG--NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAA 199

Query: 236 ESQVPDAPAFI-RRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD-HP 293
           E     AP+   +   D     G    L          +C             A G+  P
Sbjct: 200 EDARQYAPSIKAKFPADTYALTGQMVTL----------ECF------------AFGNPVP 237

Query: 294 IF-----GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 348
                       +        L+I+ V  +D G Y   A N  G  T +  + + +    
Sbjct: 238 QIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA---- 293

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
            P ++  + D    +G+  R        P    + W R+ + L      R +  G     
Sbjct: 294 QPDWLDVITDTEADIGSDLRWSCVASGKPR-PAVRWLRDGQPLASQN--RIEVSGGELRF 350

Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
             S + L DSG + C+AEN  G  + S EL+V 
Sbjct: 351 --SKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  122 bits (308), Expect = 4e-30
 Identities = 71/401 (17%), Positives = 114/401 (28%), Gaps = 109/401 (27%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALT--------ANPKDPSSLGTYTCEAVNCMGAAFS-T 52
             P     W  +  ++K G              +NP      G+Y C A N  G   S  
Sbjct: 33  ANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSRE 92

Query: 53  SRVIARGQQSFLD----------NDDVPFN-RAQGDHP------IFGNRFRAINRDGR-- 93
           + +     Q F               V F       +P      +       I  DGR  
Sbjct: 93  ASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRF 152

Query: 94  -----TELNIRRVRRDDGGRYSVTASNESGYST-------AKFELSVESQVPDAPAFI-R 140
                  L I +    D G YS  A++   + T       ++  L+ E     AP+   +
Sbjct: 153 VSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAK 212

Query: 141 RLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD-HPIF-----GNRFRA 194
              D     G    L          +C             A G+  P            +
Sbjct: 213 FPADTYALTGQMVTL----------ECF------------AFGNPVPQIKWRKLDGSQTS 250

Query: 195 INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAV 254
                   L+I+ V  +D G Y   A N  G  T +  + + +     P ++  + D   
Sbjct: 251 KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA----QPDWLDVITDTEA 306

Query: 255 KVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD-----------HPIFGNRFRAIN 303
            +G+  R            C             A G             P+       ++
Sbjct: 307 DIGSDLRW----------SCV------------ASGKPRPAVRWLRDGQPLASQNRIEVS 344

Query: 304 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
                EL   ++  +D G Y   A N+ G   A  EL+V++
Sbjct: 345 GG---ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 93.4 bits (232), Expect = 3e-20
 Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 29/228 (12%)

Query: 748 APKFIEGLKSC---QATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKE--TL 802
            P F E        + +  E+   T +   +P     W  +  ++    + +       L
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63

Query: 803 GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLS--E 860
               +  + ++  D   ++C+ATN  G ++ S    L         +F  E +  +   E
Sbjct: 64  ----VISNPVKAKDAGSYQCVATNARG-TVVSREASLRFGF---LQEFSAEERDPVKITE 115

Query: 861 GGAVNLECKVI-GVPQPTLKWFKDGREL-KAGDIHKIISGEDGTCCL----------GIY 908
           G  V   C      P  + +W  +        D  + +S   G   L          G Y
Sbjct: 116 GWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN--LYIAKTEASDLGNY 173

Query: 909 TCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALIVKDPSLSTIQE 956
           +C A + +   + S      +     E A +   ++  K P+ +    
Sbjct: 174 SCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALT 221

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  188 bits (478), Expect = 2e-52
 Identities = 80/438 (18%), Positives = 134/438 (30%), Gaps = 96/438 (21%)

Query: 446 KAPFFTKELEAILT--EQGTVSLECKVMGIPTPQLIWYKDNKKIKA-----------GDI 492
           K P F KE    +         +ECK  G P P++IW + +                G +
Sbjct: 2   KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61

Query: 493 FALTANPKDPSSL---GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGP 549
                  +D         Y C A N  G+  S        +                   
Sbjct: 62  VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRD---VHVRAVVA--------------- 103

Query: 550 APIFIKEVENVKAKIGTSAILECQV--LVPPWPRSIYWYNKEG-----VVEASDKYHIMA 602
              +  +V       G SA+++C +   V  +   + W+  E        E   KY ++ 
Sbjct: 104 -QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLP 162

Query: 603 DGLGGYSIEINYLEAVDD-GEWKCVATSSSGVKQFSAAYVHVLM---PKNYRKPRFVESL 658
            G     + I  +   D    ++C        +   +A    L+   P +   PR    +
Sbjct: 163 SG----ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALV 218

Query: 659 KAVMT--DDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------- 705
           +  +       +S  C   GFP P+ +W+K  E         L                 
Sbjct: 219 QKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV 278

Query: 706 ----GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT 761
               G Y CV  N +G     T LT+                             +    
Sbjct: 279 VEDSGKYLCVVNNSVGGESVETVLTVTA------------------PLSAKIDPPTQTVD 320

Query: 762 VNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWK 821
                 FT Q + +P   VSW +D + +  S++V           L+I +++  D+  ++
Sbjct: 321 FGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV-----------LRIESVKKEDKGMYQ 369

Query: 822 CIATNDFGQSITSCFLKL 839
           C   ND   +  S  LKL
Sbjct: 370 CFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  168 bits (428), Expect = 9e-46
 Identities = 74/411 (18%), Positives = 128/411 (31%), Gaps = 63/411 (15%)

Query: 550 APIFIKE-VENVKAKIGTSAILECQVLVPPWPRSIYWY--NKEGVVEASDKYHIMADGLG 606
            P+F+KE    +     T A +EC+    P P  I W   +   V +      I +DG  
Sbjct: 3   GPVFLKEPTNRIDFSNSTGAEIECKASGNPMP-EIIWIRSDGTAVGDVPGLRQISSDG-- 59

Query: 607 GYSIEI------NYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKA 660
              +        +Y + V    + C+A +  G       +V  ++        +   +  
Sbjct: 60  --KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVA-----QYYEADVNK 112

Query: 661 VMTDDG-LVSFECKV---VGFPTPTLQWFKDNEELKPGDV-----YQLTGTSSL------ 705
                G     +C +   V      + W  D EE           Y +  +  L      
Sbjct: 113 EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVG 172

Query: 706 -----GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQ- 759
                 SY C  K+ +      T+L+    R  ++E        ++ AP+    ++    
Sbjct: 173 PEDGYKSYQCRTKHRLT---GETRLSATKGRLVITEP------ISSSAPRTPALVQKPLE 223

Query: 760 ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETLGVCHLKIHALEVADQA 818
             V             P P   W++  +       V +  +       L I    V D  
Sbjct: 224 LMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSG 283

Query: 819 EWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVPQPT 877
           ++ C+  N  G       L +  P          +     +  G      C+  G P  T
Sbjct: 284 KYLCVVNNSVGGESVETVLTVTAP-----LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKT 338

Query: 878 LKWFKDGRELKAGDIHKIISG---EDGTCCLGIYTCEAHNCMGTTSSSAAL 925
           + W KDG+ +   +    I     ED     G+Y C   N   +  +SA L
Sbjct: 339 VSWMKDGKAIGHSESVLRIESVKKEDK----GMYQCFVRNDRESAEASAEL 385

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  136 bits (345), Expect = 7e-35
 Identities = 76/420 (18%), Positives = 130/420 (30%), Gaps = 66/420 (15%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFS-FRAQGDHPIFGNRFR 193
            P F++   +         R+     +  EI+C+   N        R+ G         R
Sbjct: 3   GPVFLKEPTN---------RIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLR 53

Query: 194 AINRDGRTELNIRRVRRDDG------GRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 247
            I+ DG  +L     R +D         Y+  A N+ G   ++    V  +   A  +  
Sbjct: 54  QISSDG--KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISR---DVHVRAVVAQYYEA 108

Query: 248 RLHDIAVKVGTRARLLVEIRS-----PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAI 302
            ++   V  G  A +   I S        +    D                 +  ++  +
Sbjct: 109 DVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTD-------EEENYFPGAEYDGKYL-V 160

Query: 303 NRDGRTELNIRRVRRDDG-GRYSVTASNESGYST---AKFELSV-----ESQVPDAPAFI 353
              G  EL+IR V  +DG   Y     +     T   A     V      S  P  PA +
Sbjct: 161 LPSG--ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALV 218

Query: 354 RRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL--S 410
           ++   + + V     LL   +  P      WY+        +              L   
Sbjct: 219 QK--PLELMVAHTISLLCPAQGFPA-PSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIK 275

Query: 411 SVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECK 469
              + DSG++ C+  N+VG       L+V  P          +      + G      C+
Sbjct: 276 DAVVEDSGKYLCVVNNSVGGESVETVLTVTAP-----LSAKIDPPTQTVDFGRPAVFTCQ 330

Query: 470 VMGIPTPQLIWYKDNKKIKAGD----IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRV 525
             G P   + W KD K I   +    I ++          G Y C   N   +A +++ +
Sbjct: 331 YTGNPIKTVSWMKDGKAIGHSESVLRIESVK-----KEDKGMYQCFVRNDRESAEASAEL 385

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  114 bits (286), Expect = 3e-27
 Identities = 63/380 (16%), Positives = 116/380 (30%), Gaps = 63/380 (16%)

Query: 82  GNRFRAINRDGRTELNIRRVRRDDG------GRYSVTASNESGYSTAKFELSVESQVPDA 135
               R I+ DG  +L     R +D         Y+  A N+ G   ++    V  +   A
Sbjct: 49  VPGLRQISSDG--KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISR---DVHVRAVVA 103

Query: 136 PAFIRRLHDIAVKVGTRARLLVEIRS-----PTEIKCQFDLNNTIPFSFRAQGDHPIFGN 190
             +   ++   V  G  A +   I S        +    D                 +  
Sbjct: 104 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTD-------EEENYFPGAEYDG 156

Query: 191 RFRAINRDGRTELNIRRVRRDDG-GRYSVTASNESGYST---AKFELSV-----ESQVPD 241
           ++  +   G  EL+IR V  +DG   Y     +     T   A     V      S  P 
Sbjct: 157 KYL-VLPSG--ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPR 213

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 299
            PA +++   + + V     LL   +  P    +    +  T            +  +R 
Sbjct: 214 TPALVQK--PLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTR------KQAVVLNDRV 265

Query: 300 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDI 359
           + ++      L I+    +D G+Y    +N  G  + +  L+V +      +        
Sbjct: 266 KQVSG----TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA----PLSAKIDPPTQ 317

Query: 360 AVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGR 419
            V  G  A    +        + W ++ + +  +       +         SV   D G 
Sbjct: 318 TVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-------ESVLRI---ESVKKEDKGM 367

Query: 420 WTCLAENAVGRSHCSCELSV 439
           + C   N    +  S EL +
Sbjct: 368 YQCFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 98.9 bits (246), Expect = 4e-22
 Identities = 67/402 (16%), Positives = 113/402 (28%), Gaps = 105/402 (26%)

Query: 2   GIPTPQLIWYKDNKKIKA-----------GDIFALTANPKDPSSL---GTYTCEAVNCMG 47
           G P P++IW + +                G +       +D         Y C A N  G
Sbjct: 30  GNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFG 89

Query: 48  AAFS-----------------TSRVIARGQQSFLD-------NDDVPF------NRAQGD 77
           +  S                     + RG  + +         D V              
Sbjct: 90  SIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYF 149

Query: 78  HPIFGNRFRAINRDGRTELNIRRVRRDDG-GRYSVTASNESGYST---AKFELSV----- 128
                +    +   G  EL+IR V  +DG   Y     +     T   A     V     
Sbjct: 150 PGAEYDGKYLVLPSG--ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPI 207

Query: 129 ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHP 186
            S  P  PA +++   + + V     LL   +  P    +    +  T            
Sbjct: 208 SSSAPRTPALVQK--PLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTR------KQAV 259

Query: 187 IFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFI 246
           +  +R + ++      L I+    +D G+Y    +N  G  + +  L+V +      +  
Sbjct: 260 VLNDRVKQVSG----TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA----PLSAK 311

Query: 247 RRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHP--IF----GNRFR 300
                  V  G  A             CQ              G+    +     G   +
Sbjct: 312 IDPPTQTVDFGRPAVF----------TCQ------------YTGNPIKTVSWMKDG---K 346

Query: 301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
           AI       L I  V+++D G Y     N+   + A  EL +
Sbjct: 347 AIGHSESV-LRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 64.2 bits (156), Expect = 9e-11
 Identities = 26/122 (21%), Positives = 36/122 (29%), Gaps = 22/122 (18%)

Query: 846 KKPKFLEELKAVL--SEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTC 903
           K P FL+E    +  S      +ECK  G P P + W +                 DG  
Sbjct: 2   KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61

Query: 904 CL--------------GIYTCEAHNCMGTTSSSAALL------GFEDKSQIEKAEEGKKA 943
                            +Y C A N  G+  S    +       +E     E    G  A
Sbjct: 62  VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSA 121

Query: 944 LI 945
           +I
Sbjct: 122 VI 123

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  171 bits (434), Expect = 7e-49
 Identities = 44/190 (23%), Positives = 74/190 (38%), Gaps = 12/190 (6%)

Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESD-NVKILKETLGVCH 806
           AP F E L++             +V+  P+P V W+R  ++++      +I +   G   
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63

Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVN 865
           L I ++   D   ++  ATN  G    +  L++ VP     PK LE + AV    G  V+
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123

Query: 866 LECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCEAHNC 915
           ++    G P P + W K    +     +++I     T  +          G Y   A N 
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183

Query: 916 MGTTSSSAAL 925
            G    +  L
Sbjct: 184 FGIDQKTVEL 193

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  148 bits (376), Expect = 5e-41
 Identities = 49/198 (24%), Positives = 82/198 (41%), Gaps = 18/198 (9%)

Query: 548 GPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMADGLG 606
             AP F +E+ N+  +  ++A L C+V   P P  + WY   + ++    KY I     G
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKP-IVKWYRQGKEIIADGLKYRIQEFKGG 60

Query: 607 GYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG 666
            + + I  +   D   ++  AT+  G    +A  + V +P     P+ +E + AV    G
Sbjct: 61  YHQLIIASVTDDDATVYQVRATNQGGSVSGTA-SLEVEVPAKIHLPKTLEGMGAVHALRG 119

Query: 667 -LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL--------------GSYCCV 711
            +VS +    G P P + W K  + +     YQ+  T S               G Y   
Sbjct: 120 EVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVC 179

Query: 712 AKNVMGKAESSTQLTIED 729
           AKN  G  + + +L + D
Sbjct: 180 AKNRFGIDQKTVELDVAD 197

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  145 bits (368), Expect = 6e-40
 Identities = 41/194 (21%), Positives = 74/194 (38%), Gaps = 19/194 (9%)

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIR---SPTEIKIHWYRNDRKLEEN--KIYRTQHDGN 403
           AP F   L ++ V+  + A L+ ++     P    + WYR  +++  +  K    +  G 
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPI---VKWYRQGKEIIADGLKYRIQEFKGG 60

Query: 404 FYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG- 462
           ++ + ++SV+  D+  +   A N  G    +  L V VP     P   + + A+   +G 
Sbjct: 61  YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 120

Query: 463 TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEA 512
            VS++    G P P + W K    I     + +       S +          G Y   A
Sbjct: 121 VVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180

Query: 513 VNCMGAAFSTSRVI 526
            N  G    T  + 
Sbjct: 181 KNRFGIDQKTVELD 194

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  139 bits (353), Expect = 6e-38
 Identities = 37/202 (18%), Positives = 67/202 (33%), Gaps = 29/202 (14%)

Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGD-----VYQLTGTSSL 705
           P F E L+ +        +  CKV G P P ++W++  +E+              G   L
Sbjct: 5   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64

Query: 706 ----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL 755
                       Y   A N  G    +  L +E                    PK +EG+
Sbjct: 65  IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI-------------HLPKTLEGM 111

Query: 756 KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVA 815
            +  A   E     +  S  P+P ++W +    +  + + +++        +  + +E  
Sbjct: 112 GAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERK 171

Query: 816 DQAEWKCIATNDFGQSITSCFL 837
           D   +   A N FG    +  L
Sbjct: 172 DAGFYVVCAKNRFGIDQKTVEL 193

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  125 bits (315), Expect = 7e-33
 Identities = 42/205 (20%), Positives = 74/205 (36%), Gaps = 20/205 (9%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF--GN 297
           AP F   L ++ V+  + A L+ ++   P   +K                    I   G 
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQ-------------GKEIIADGL 50

Query: 298 RFR-AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD-APAFIRR 355
           ++R    + G  +L I  V  DD   Y V A+N+ G  +    L VE       P  +  
Sbjct: 51  KYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEG 110

Query: 356 LHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI-DLSSVSL 414
           +  +    G    + +      +  I W +    ++ N  Y+     +F  +   + V  
Sbjct: 111 MGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVER 170

Query: 415 FDSGRWTCLAENAVGRSHCSCELSV 439
            D+G +   A+N  G    + EL V
Sbjct: 171 KDAGFYVVCAKNRFGIDQKTVELDV 195

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  121 bits (306), Expect = 1e-31
 Identities = 44/212 (20%), Positives = 69/212 (32%), Gaps = 35/212 (16%)

Query: 447 APFFTKELE-AILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA-----------GDIFA 494
           AP F +EL    +  Q   +L CKV G P P + WY+  K+I A           G    
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63

Query: 495 LTANPKDPSSLGTYTCEAVNCMGAAFSTSR--VIARGQQSFLDNDDVPFNSLMPPGPAPI 552
           L            Y   A N  G+   T+   V                         P 
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVP-----------------AKIHLPK 106

Query: 553 FIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG-VVEASDKYHIMADGLGGYSIE 611
            ++ +  V A  G    ++      P P  I W  K   +++ +  Y ++        + 
Sbjct: 107 TLEGMGAVHALRGEVVSIKIPFSGKPDPV-ITWQ-KGQDLIDNNGHYQVIVTRSFTSLVF 164

Query: 612 INYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
            N +E  D G +   A +  G+ Q     + V
Sbjct: 165 PNGVERKDAGFYVVCAKNRFGIDQ-KTVELDV 195

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  108 bits (272), Expect = 5e-27
 Identities = 46/219 (21%), Positives = 70/219 (31%), Gaps = 36/219 (16%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF--GN 190
           AP F   L ++ V+  + A L+ ++   P   +K                    I   G 
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQ-------------GKEIIADGL 50

Query: 191 RFR-AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD-APAFIRR 248
           ++R    + G  +L I  V  DD   Y V A+N+ G  +    L VE       P  +  
Sbjct: 51  KYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEG 110

Query: 249 LHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNRFRAI-NR 304
           +  +    G    + +     P   I  Q                  I     ++ I  R
Sbjct: 111 MGAVHALRGEVVSIKIPFSGKPDPVITWQKG-------------QDLIDNNGHYQVIVTR 157

Query: 305 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
              + +    V R D G Y V A N  G      EL V 
Sbjct: 158 SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 96.3 bits (240), Expect = 7e-23
 Identities = 37/169 (21%), Positives = 53/169 (31%), Gaps = 21/169 (12%)

Query: 76  GDHPIF--GNRFR-AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV 132
               I   G ++R    + G  +L I  V  DD   Y V A+N+ G  +    L VE   
Sbjct: 41  QGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPA 100

Query: 133 PD-APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF- 188
               P  +  +  +    G    + +     P   I  Q                  I  
Sbjct: 101 KIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKG-------------QDLIDN 147

Query: 189 GNRFRAI-NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
              ++ I  R   + +    V R D G Y V A N  G      EL V 
Sbjct: 148 NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 76.7 bits (189), Expect = 5e-16
 Identities = 34/167 (20%), Positives = 45/167 (26%), Gaps = 39/167 (23%)

Query: 2   GIPTPQLIWYKDNKKIKA-----------GDIFALTANPKDPSSLGTYTCEAVNCMGAAF 50
           G P P + WY+  K+I A           G    L            Y   A N  G+  
Sbjct: 30  GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVS 89

Query: 51  STSR--VIARGQ------------QSFLDNDDVPFN-RAQG-----------DHPIF-GN 83
            T+   V    +               L  + V       G              I    
Sbjct: 90  GTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNG 149

Query: 84  RFRAI-NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
            ++ I  R   + +    V R D G Y V A N  G      EL V 
Sbjct: 150 HYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  170 bits (432), Expect = 2e-47
 Identities = 59/302 (19%), Positives = 102/302 (33%), Gaps = 54/302 (17%)

Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL-- 705
            +   SL  V    G    F C  +G P     +    E++       +      S L  
Sbjct: 5   LQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTI 64

Query: 706 --------GSYCCVAKNVMGKAESST-QLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLK 756
                   G Y C A +  G+ + +T  L I                   +   F E + 
Sbjct: 65  YNANIEDAGIYRCQATDAKGQTQEATVVLEIY------------------QKLTFREVVS 106

Query: 757 SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVAD 816
             +    E+ +   +VS SP P VSW   +++V    + +          L+I  +  +D
Sbjct: 107 PQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN--LQILNINKSD 164

Query: 817 QAEWKCIATNDFGQSITSC--FLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVP 874
           +  ++C    +    I      + +NVP     P+      A    G  +   C+  G P
Sbjct: 165 EGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAE--RGEEMTFSCRASGSP 222

Query: 875 QPTLKWFKDGRELKAGDIHKIISG-----------EDGTCCLGIYTCEAHNCMGTTSSSA 923
           +P + WF++G+ ++  + + +               DG    G Y C A N  G     A
Sbjct: 223 EPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDG----GPYVCRATNKAGEDEKQA 278

Query: 924 AL 925
            L
Sbjct: 279 FL 280

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  168 bits (427), Expect = 1e-46
 Identities = 61/320 (19%), Positives = 109/320 (34%), Gaps = 50/320 (15%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVL-VPPWPRSIYWYNKEGV-VEASDKYHIMADGLGG 607
                  +  V+  +G S    C  +  P    SI WYN +G  + ++ +  +  +G   
Sbjct: 4   LLQVTISLSKVELSVGESKFFTCTAIGEPE---SIDWYNPQGEKIISTQRVVVQKEG-VR 59

Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG- 666
             + I      D G ++C AT + G  Q +   + +          F E +       G 
Sbjct: 60  SRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQK-----LTFREVVSPQEFKQGE 114

Query: 667 LVSFECKVVGFPTPTLQWFKDNEELKPGDV--YQLTGTSSL----------GSYCCVAKN 714
                C+V   P P + W   NEE+       + +   ++L          G Y C  + 
Sbjct: 115 DAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRV 174

Query: 715 VMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFI--EGLKSCQATVNEEFKFTVQV 772
                                     +++  N  P     +   +  A   EE  F+ + 
Sbjct: 175 EARGEIDFRD----------------IIVIVNVPPAISMPQKSFNATAERGEEMTFSCRA 218

Query: 773 SISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSI 832
           S SPEP +SWFR+ + + E++   +         L +  +  +D   + C ATN  G+  
Sbjct: 219 SGSPEPAISWFRNGKLIEENEKYILKGSN---TELTVRNIINSDGGPYVCRATNKAGEDE 275

Query: 833 TSCFLKLNVPKHYKKPKFLE 852
              FL++ V           
Sbjct: 276 KQAFLQVFVQ-----HHHHH 290

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  154 bits (392), Expect = 5e-42
 Identities = 57/319 (17%), Positives = 107/319 (33%), Gaps = 63/319 (19%)

Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL 505
               T  L  +    G +    C  +G P     +    +KI +     +       S L
Sbjct: 4   LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKE-GVRSRL 62

Query: 506 ----------GTYTCEAVNCMGAAFSTS---RVIARGQQSFLDNDDVPFNSLMPPGPAPI 552
                     G Y C+A +  G     +    +  +                        
Sbjct: 63  TIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQK----------------------LT 100

Query: 553 FIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV---VEASDKYHIMADGLGGYS 609
           F + V   + K G  A + C+V   P P ++ W           + +++ ++A+     +
Sbjct: 101 FREVVSPQEFKQGEDAEVVCRVSSSPAP-AVSWL-YHNEEVTTISDNRFAMLANN----N 154

Query: 610 IEINYLEAVDDGEWKCVAT-SSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLV 668
           ++I  +   D+G ++C     + G   F    V V +P     P+   +  A       +
Sbjct: 155 LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATA--ERGEEM 212

Query: 669 SFECKVVGFPTPTLQWFKDNEELKPGDVYQLTG-TSSL----------GSYCCVAKNVMG 717
           +F C+  G P P + WF++ + ++  + Y L G  + L          G Y C A N  G
Sbjct: 213 TFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAG 272

Query: 718 KAESSTQLTIED---IRNH 733
           + E    L +       +H
Sbjct: 273 EDEKQAFLQVFVQHHHHHH 291

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  141 bits (358), Expect = 2e-37
 Identities = 49/299 (16%), Positives = 93/299 (31%), Gaps = 35/299 (11%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIRS-PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 300
                  L  + + VG            P  I             +  QG+  I   R  
Sbjct: 4   LLQVTISLSKVELSVGESKFFTCTAIGEPESID-----------WYNPQGEKIISTQRVV 52

Query: 301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQVPDAPAFIRRLHDI 359
                 R+ L I     +D G Y   A++  G +  A   L +         F   +   
Sbjct: 53  VQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ----KLTFREVVSPQ 108

Query: 360 AVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEE--NKIYRTQHDGNFYFIDLSSVSLFDS 417
             K G  A ++  + S     + W  ++ ++    +  +    + N       +++  D 
Sbjct: 109 EFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI---LNINKSDE 165

Query: 418 GRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFT---KELEAILTEQGTVSLECKVMGIP 474
           G + C             ++ V+V      P  +   K   A       ++  C+  G P
Sbjct: 166 GIYRCEGRVEARGEIDFRDIIVIV---NVPPAISMPQKSFNATAERGEEMTFSCRASGSP 222

Query: 475 TPQLIWYKDNKKIKAGDIFALTANPKD-------PSSLGTYTCEAVNCMGAAFSTSRVI 526
            P + W+++ K I+  + + L  +  +        S  G Y C A N  G     + + 
Sbjct: 223 EPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 281

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  137 bits (346), Expect = 7e-36
 Identities = 55/313 (17%), Positives = 92/313 (29%), Gaps = 36/313 (11%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRS-PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 193
                  L  + + VG            P  I             +  QG+  I   R  
Sbjct: 4   LLQVTISLSKVELSVGESKFFTCTAIGEPESID-----------WYNPQGEKIISTQRVV 52

Query: 194 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQVPDAPAFIRRLHDI 252
                 R+ L I     +D G Y   A++  G +  A   L +         F   +   
Sbjct: 53  VQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ----KLTFREVVSPQ 108

Query: 253 AVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTEL 310
             K G  A ++  +  SP   +   +              +  +               L
Sbjct: 109 EFKQGEDAEVVCRVSSSPAPAVSWLYH-------------NEEVTTISDNRFAMLANNNL 155

Query: 311 NIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLL 370
            I  + + D G Y      E+       ++ V   VP A +  ++  +   + G      
Sbjct: 156 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFS 215

Query: 371 VEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG 429
                SP    I W+RN + +EEN+ Y  +       +   ++   D G + C A N  G
Sbjct: 216 CRASGSPE-PAISWFRNGKLIEENEKYILKGSNTELTV--RNIINSDGGPYVCRATNKAG 272

Query: 430 RSHCSCELSVLVP 442
                  L V V 
Sbjct: 273 EDEKQAFLQVFVQ 285

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  124 bits (314), Expect = 1e-31
 Identities = 37/204 (18%), Positives = 70/204 (34%), Gaps = 19/204 (9%)

Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
             +    L   + +V E   FT      PE  + W+    + + S    ++++      L
Sbjct: 4   LLQVTISLSKVELSVGESKFFTCTAIGEPES-IDWYNPQGEKIISTQRVVVQKEGVRSRL 62

Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVNL 866
            I+   + D   ++C AT+  GQ+  +    L +   Y+K  F E +      +G    +
Sbjct: 63  TIYNANIEDAGIYRCQATDAKGQTQEATV-VLEI---YQKLTFREVVSPQEFKQGEDAEV 118

Query: 867 ECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCEAHN-C 915
            C+V   P P + W     E+     ++     +    L          GIY CE     
Sbjct: 119 VCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN--LQILNINKSDEGIYRCEGRVEA 176

Query: 916 MGTTSSSAALLGFEDKSQIEKAEE 939
            G       ++       I   ++
Sbjct: 177 RGEIDFRDIIVIVNVPPAISMPQK 200

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  111 bits (278), Expect = 6e-27
 Identities = 48/278 (17%), Positives = 81/278 (29%), Gaps = 36/278 (12%)

Query: 73  RAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQ 131
             QG+  I   R        R+ L I     +D G Y   A++  G +  A   L +   
Sbjct: 39  NPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ- 97

Query: 132 VPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFG 189
                 F   +     K G  A ++  +  SP   +   +              +  +  
Sbjct: 98  ---KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYH-------------NEEVTT 141

Query: 190 NRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRL 249
                        L I  + + D G Y      E+       ++ V   VP A +  ++ 
Sbjct: 142 ISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKS 201

Query: 250 HDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGR 307
            +   + G           SP   I    +                I  N    +     
Sbjct: 202 FNATAERGEEMTFSCRASGSPEPAISWFRN-------------GKLIEENEKYILKGSNT 248

Query: 308 TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
             L +R +   DGG Y   A+N++G    +  L V  Q
Sbjct: 249 E-LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 285

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 98.3 bits (245), Expect = 1e-22
 Identities = 43/271 (15%), Positives = 73/271 (26%), Gaps = 49/271 (18%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
           G P     +    +KI +     +       S L          G Y C+A +  G    
Sbjct: 30  GEPESIDWYNPQGEKIISTQRVVVQKE-GVRSRLTIYNANIEDAGIYRCQATDAKGQTQE 88

Query: 52  TS---RVIAR-------GQQSFLDNDDVPFN-RAQG-----------DHPIFGNRFRAIN 89
            +    +  +         Q F   +D     R              +  +         
Sbjct: 89  ATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFA 148

Query: 90  RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKV 149
                 L I  + + D G Y      E+       ++ V   VP A +  ++  +   + 
Sbjct: 149 MLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAER 208

Query: 150 GTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRR 207
           G           SP   I    +                I  N    +       L +R 
Sbjct: 209 GEEMTFSCRASGSPEPAISWFRN-------------GKLIEENEKYILKGSNTE-LTVRN 254

Query: 208 VRRDDGGRYSVTASNESGYSTAKFELSVESQ 238
           +   DGG Y   A+N++G    +  L V  Q
Sbjct: 255 IINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 285

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  162 bits (412), Expect = 6e-46
 Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 15/191 (7%)

Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETLGVC 805
           +AP F + L+S          F   +S  P P+VSWFRD Q +  S    + +  + G  
Sbjct: 4   QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63

Query: 806 HLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAV 864
            L I A+  A+   +   ATN  GQ+ ++   +L V      P F++ L+++ + +G  V
Sbjct: 64  KLTIPAVTKANSGRYSLKATNGSGQATSTA--ELLVKAETAPPNFVQRLQSMTVRQGSQV 121

Query: 865 NLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCEAHN 914
            L+ +V G+P P +K+++DG E+++    +I   E     L          G Y+  A N
Sbjct: 122 RLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQ-EGDLYSLLIAEAYPEDSGTYSVNATN 180

Query: 915 CMGTTSSSAAL 925
            +G  +S+A L
Sbjct: 181 SVGRATSTAEL 191

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  146 bits (370), Expect = 3e-40
 Identities = 46/204 (22%), Positives = 86/204 (42%), Gaps = 32/204 (15%)

Query: 650 RKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT-----GTS 703
           + P F + L++V+  +G   +FE  + GFP P + WF+D + +    +  +      G +
Sbjct: 4   QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63

Query: 704 SL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIE 753
            L          G Y   A N  G+A S+ +L ++                    P F++
Sbjct: 64  KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKA---------------ETAPPNFVQ 108

Query: 754 GLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALE 813
            L+S       + +  V+V+  P P V ++RD  ++  S + +I +E   +  L I    
Sbjct: 109 RLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEG-DLYSLLIAEAY 167

Query: 814 VADQAEWKCIATNDFGQSITSCFL 837
             D   +   ATN  G++ ++  L
Sbjct: 168 PEDSGTYSVNATNSVGRATSTAEL 191

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  139 bits (352), Expect = 8e-38
 Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 21/200 (10%)

Query: 340 LSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI--YR 397
           ++ +     AP F + L  + V  G+ A     I      ++ W+R+ + +  + +   +
Sbjct: 1   MTTQ-----APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQ 55

Query: 398 TQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAI 457
                    + + +V+  +SGR++  A N  G++  + EL V    A   P F + L+++
Sbjct: 56  ISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA--PPNFVQRLQSM 113

Query: 458 LTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------G 506
              QG  V L+ +V GIPTP + +Y+D  +I++   F ++    D  SL          G
Sbjct: 114 TVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQE-GDLYSLLIAEAYPEDSG 172

Query: 507 TYTCEAVNCMGAAFSTSRVI 526
           TY+  A N +G A ST+ ++
Sbjct: 173 TYSVNATNSVGRATSTAELL 192

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  136 bits (343), Expect = 1e-36
 Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 21/195 (10%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGG- 607
           AP F + +++V    G++A  E  +   P P  + W+ ++G  +  S    +      G 
Sbjct: 5   APTFTQPLQSVVVLEGSTATFEAHISGFPVP-EVSWF-RDGQVISTSTLPGVQISFSDGR 62

Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGL 667
             + I  +   + G +   AT+ SG    + A + V        P FV+ L+++    G 
Sbjct: 63  AKLTIPAVTKANSGRYSLKATNGSGQATST-AELLVKAET--APPNFVQRLQSMTVRQGS 119

Query: 668 -VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL----------GSYCCVAK 713
            V  + +V G PTP +++++D  E++    +Q++      SL          G+Y   A 
Sbjct: 120 QVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNAT 179

Query: 714 NVMGKAESSTQLTIE 728
           N +G+A S+ +L ++
Sbjct: 180 NSVGRATSTAELLVQ 194

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  133 bits (336), Expect = 1e-35
 Identities = 57/210 (27%), Positives = 101/210 (48%), Gaps = 20/210 (9%)

Query: 233 LSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQG 290
           ++ +     AP F + L  + V  G+ A     I   P  E+    D    I  S     
Sbjct: 1   MTTQ-----APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRD-GQVISTSTL--- 51

Query: 291 DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 350
                    +    DGR +L I  V + + GRYS+ A+N SG +T+  EL V+++    P
Sbjct: 52  ------PGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE-TAPP 104

Query: 351 AFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL 409
            F++RL  + V+ G++ RL V +   PT   + +YR+  +++ +  ++   +G+ Y + +
Sbjct: 105 NFVQRLQSMTVRQGSQVRLQVRVTGIPT-PVVKFYRDGAEIQSSLDFQISQEGDLYSLLI 163

Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
           +     DSG ++  A N+VGR+  + EL V
Sbjct: 164 AEAYPEDSGTYSVNATNSVGRATSTAELLV 193

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  125 bits (315), Expect = 6e-33
 Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 34/211 (16%)

Query: 446 KAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIF-ALTANPKDPS 503
           +AP FT+ L++++  +G T + E  + G P P++ W++D + I    +     +     +
Sbjct: 4   QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63

Query: 504 SL----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIF 553
            L          G Y+ +A N  G A ST+ ++                 +      P F
Sbjct: 64  KLTIPAVTKANSGRYSLKATNGSGQATSTAELL-----------------VKAETAPPNF 106

Query: 554 IKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGGYSIEI 612
           ++ ++++  + G+   L+ +V   P P  + +Y ++G  +++S  + I  +G   YS+ I
Sbjct: 107 VQRLQSMTVRQGSQVRLQVRVTGIPTP-VVKFY-RDGAEIQSSLDFQISQEG-DLYSLLI 163

Query: 613 NYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
                 D G +   AT+S G    S A + V
Sbjct: 164 AEAYPEDSGTYSVNATNSVGRAT-STAELLV 193

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  119 bits (299), Expect = 1e-30
 Identities = 60/223 (26%), Positives = 92/223 (41%), Gaps = 34/223 (15%)

Query: 126 LSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQG 183
           ++ +     AP F + L  + V  G+ A     I   P  E+    D    I  S     
Sbjct: 1   MTTQ-----APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRD-GQVISTSTL--- 51

Query: 184 DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 243
                    +    DGR +L I  V + + GRYS+ A+N SG +T+  EL V+++    P
Sbjct: 52  ------PGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE-TAPP 104

Query: 244 AFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNRFR 300
            F++RL  + V+ G++ RL V +   PT  +K   D                I     F+
Sbjct: 105 NFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRD-------------GAEIQSSLDFQ 151

Query: 301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
                    L I     +D G YSV A+N  G +T+  EL V+
Sbjct: 152 ISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  106 bits (266), Expect = 3e-26
 Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 17/156 (10%)

Query: 84  RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 143
             +    DGR +L I  V + + GRYS+ A+N SG +T+  EL V+++    P F++RL 
Sbjct: 53  GVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE-TAPPNFVQRLQ 111

Query: 144 DIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNRFRAINRDGR 200
            + V+ G++ RL V +   PT  +K   D                I     F+       
Sbjct: 112 SMTVRQGSQVRLQVRVTGIPTPVVKFYRD-------------GAEIQSSLDFQISQEGDL 158

Query: 201 TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
             L I     +D G YSV A+N  G +T+  EL V+
Sbjct: 159 YSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 85.5 bits (212), Expect = 5e-19
 Identities = 34/164 (20%), Positives = 56/164 (34%), Gaps = 36/164 (21%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIF-ALTANPKDPSSL----------GTYTCEAVNCMGAAF 50
           G P P++ W++D + I    +     +     + L          G Y+ +A N  G A 
Sbjct: 31  GFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQAT 90

Query: 51  STSRVIARGQ------------QSFLDNDDVPFN-RAQG-----------DHPIF-GNRF 85
           ST+ ++ + +             +      V    R  G              I     F
Sbjct: 91  STAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDF 150

Query: 86  RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
           +         L I     +D G YSV A+N  G +T+  EL V+
Sbjct: 151 QISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  157 bits (400), Expect = 3e-44
 Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 12/189 (6%)

Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH 806
           +AP   + +K     + E  + + Q+   P P + W+R  +++++S   K+  +      
Sbjct: 6   EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDG-RTHT 64

Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNL 866
           L +   E  D+  + CIATN+ G+  TS  L L     +     L+E     + G  + L
Sbjct: 65  LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYG-AVGSTLRL 123

Query: 867 ECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCEAHNCM 916
               IG P P + WF   + L+  +   I + E  T  +          G Y  +  N  
Sbjct: 124 HVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVF 183

Query: 917 GTTSSSAAL 925
           GT  +   +
Sbjct: 184 GTVDAILDV 192

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  135 bits (342), Expect = 2e-36
 Identities = 42/192 (21%), Positives = 76/192 (39%), Gaps = 19/192 (9%)

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIR---SPTEIKIHWYRNDRKLEENKIYRTQHDGNFY 405
           AP   + + D+  K+G  A+L  +I     P    I WYR  ++L +++ Y+   DG  +
Sbjct: 7   APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPD---IKWYRFGKELIQSRKYKMSSDGRTH 63

Query: 406 FIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVS 465
            + + +    D G +TC+A N VG    S +L +     +   +  KE +       T+ 
Sbjct: 64  TLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKE-KYYGAVGSTLR 122

Query: 466 LECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL-----------GTYTCEAVN 514
           L    +G P P + W+   K ++  +   +       + L           G Y  +  N
Sbjct: 123 LHVMYIGRPVPAMTWFHGQKLLQNSENITIENTE-HYTHLVMKNVQRKTHAGKYKVQLSN 181

Query: 515 CMGAAFSTSRVI 526
             G   +   V 
Sbjct: 182 VFGTVDAILDVE 193

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  135 bits (341), Expect = 2e-36
 Identities = 43/206 (20%), Positives = 79/206 (38%), Gaps = 37/206 (17%)

Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL- 705
            P   + +K V T  G      C++VG P P ++W++  +EL     Y+++    T +L 
Sbjct: 7   APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66

Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL- 755
                    G Y C+A N +G+ E+S++L ++                    P+F  G  
Sbjct: 67  VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQA------------------TPQFHPGYP 108

Query: 756 --KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIH-AL 812
             +     V    +  V     P P ++WF   + +  S+N+ I        HL +    
Sbjct: 109 LKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTE-HYTHLVMKNVQ 167

Query: 813 EVADQAEWKCIATNDFGQSITSCFLK 838
                 ++K   +N FG       ++
Sbjct: 168 RKTHAGKYKVQLSNVFGTVDAILDVE 193

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  132 bits (333), Expect = 3e-35
 Identities = 45/197 (22%), Positives = 83/197 (42%), Gaps = 20/197 (10%)

Query: 548 GPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLG 606
           G AP   KE+++V  K+G +A L CQ++  P P  I WY + G  +  S KY + +DG  
Sbjct: 5   GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLP-DIKWY-RFGKELIQSRKYKMSSDG-R 61

Query: 607 GYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG 666
            +++ +   E  D+G + C+AT+  G  + S+  + +     +     ++          
Sbjct: 62  THTLTVMTEEQEDEGVYTCIATNEVGEVETSS-KLLLQATPQFHPGYPLKEKYYG-AVGS 119

Query: 667 LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL-----------GSYCCVA 712
            +      +G P P + WF   + L+  +   +      + L           G Y    
Sbjct: 120 TLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQL 179

Query: 713 KNVMGKAESSTQLTIED 729
            NV G  ++   + I+D
Sbjct: 180 SNVFGTVDAILDVEIQD 196

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  114 bits (288), Expect = 3e-29
 Identities = 38/203 (18%), Positives = 78/203 (38%), Gaps = 20/203 (9%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 299
           AP   + + D+  K+G  A+L  +I   P  +IK                    +  +R 
Sbjct: 7   APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRF-------------GKELIQSRK 53

Query: 300 RAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 358
             ++ DGRT  L +    ++D G Y+  A+NE G      +L +++  P           
Sbjct: 54  YKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQA-TPQFHPGYPLKEK 112

Query: 359 IAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSL-FD 416
               VG+  RL V     P    + W+   + L+ ++    ++  ++  + + +V     
Sbjct: 113 YYGAVGSTLRLHVMYIGRPVP-AMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTH 171

Query: 417 SGRWTCLAENAVGRSHCSCELSV 439
           +G++     N  G      ++ +
Sbjct: 172 AGKYKVQLSNVFGTVDAILDVEI 194

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  100 bits (250), Expect = 3e-24
 Identities = 44/216 (20%), Positives = 76/216 (35%), Gaps = 34/216 (15%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
           AP   + + D+  K+G  A+L  +I   P  +IK                    +  +R 
Sbjct: 7   APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRF-------------GKELIQSRK 53

Query: 193 RAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 251
             ++ DGRT  L +    ++D G Y+  A+NE G      +L +++  P           
Sbjct: 54  YKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQA-TPQFHPGYPLKEK 112

Query: 252 IAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNRFRAINRDGRT 308
               VG+  RL V     P   +                     +         N +  T
Sbjct: 113 YYGAVGSTLRLHVMYIGRPVPAMTWFHG-------------QKLLQNSENITIENTEHYT 159

Query: 309 ELNIRRV-RRDDGGRYSVTASNESGYSTAKFELSVE 343
            L ++ V R+   G+Y V  SN  G   A  ++ ++
Sbjct: 160 HLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 88.2 bits (219), Expect = 5e-20
 Identities = 33/166 (19%), Positives = 58/166 (34%), Gaps = 19/166 (11%)

Query: 76  GDHPIFGNRFRAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 134
               +  +R   ++ DGRT  L +    ++D G Y+  A+NE G      +L +++  P 
Sbjct: 44  FGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQA-TPQ 102

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNR 191
                         VG+  RL V     P   +                     +     
Sbjct: 103 FHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHG-------------QKLLQNSEN 149

Query: 192 FRAINRDGRTELNIRRV-RRDDGGRYSVTASNESGYSTAKFELSVE 236
               N +  T L ++ V R+   G+Y V  SN  G   A  ++ ++
Sbjct: 150 ITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 79.7 bits (197), Expect = 5e-17
 Identities = 28/164 (17%), Positives = 58/164 (35%), Gaps = 37/164 (22%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
           G P P + WY+  K++     + ++++     +L          G YTC A N +G   +
Sbjct: 33  GRPLPDIKWYRFGKELIQSRKYKMSSDG-RTHTLTVMTEEQEDEGVYTCIATNEVGEVET 91

Query: 52  TSRVI------------ARGQQSFLDNDDVPFN-RAQG-----------DHPIF-GNRFR 86
           +S+++             + +        +  +    G              +       
Sbjct: 92  SSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENIT 151

Query: 87  AINRDGRTELNIRRV-RRDDGGRYSVTASNESGYSTAKFELSVE 129
             N +  T L ++ V R+   G+Y V  SN  G   A  ++ ++
Sbjct: 152 IENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  158 bits (400), Expect = 1e-42
 Identities = 53/316 (16%), Positives = 98/316 (31%), Gaps = 43/316 (13%)

Query: 652 PRFVESLKAVMTDDG-LVSFECKVV-GFPTPTLQWFKDNEELKPGDVYQLTGTSSL---- 705
                  + ++   G  V   C    G P     W KD   L P +   + G   L    
Sbjct: 9   GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV-GPQRLQVLN 67

Query: 706 ------GSYCCVAKNVMGKAESSTQLTIEDI---RNHLSEEDKLLLLTNNKAPKFIE--- 753
                 G+Y C  +         +    +      +   E++      +  AP +     
Sbjct: 68  ASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPER 127

Query: 754 -GLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHAL 812
              K          +F    + +P P +SW ++ ++      +  +K       L + ++
Sbjct: 128 MDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESV 187

Query: 813 EVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK-AVLSEGGAVNLECKVI 871
             +D+  + C+  N FG    +  L +     ++               G  V   CKV 
Sbjct: 188 VPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVY 247

Query: 872 GVPQPTLKWFK----DGRELKAGDIHKII--------SGEDGTCCL----------GIYT 909
              QP ++W K    +G ++       +         + +     L          G YT
Sbjct: 248 SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYT 307

Query: 910 CEAHNCMGTTSSSAAL 925
           C A N +G +  SA L
Sbjct: 308 CLAGNSIGFSHHSAWL 323

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  148 bits (376), Expect = 2e-39
 Identities = 56/340 (16%), Positives = 100/340 (29%), Gaps = 68/340 (20%)

Query: 546 PPGPAPIFIKEVENVKAKIGTSAILECQVLV-PPWPRSIYWYNKEGV-VEASDKYHIMAD 603
                     + E +    G +  L C      P      W  K+G  +  S++  +   
Sbjct: 4   AAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMG-PTVWV-KDGTGLVPSERVLV--- 58

Query: 604 GLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKN--------------- 648
             G   +++      D G + C    +  V    +  V                      
Sbjct: 59  --GPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVD 116

Query: 649 YRKPRFVESLKAVMTD-----DGLVSFECKVVGFPTPTLQWFKDNEELKP----GDVYQL 699
              P +    +             V F C   G PTP++ W K+  E +     G +   
Sbjct: 117 TGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLR 176

Query: 700 TGTSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAP 749
               SL          G+Y CV +N  G    +  L + +   H             +  
Sbjct: 177 HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPH-------------RPI 223

Query: 750 KFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQ------QVVESDNVKILKET-- 801
                  +  A +  + +F  +V    +P + W +  +          +  V +LK    
Sbjct: 224 LQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGA 283

Query: 802 ----LGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFL 837
                 +  L +H +   D  E+ C+A N  G S  S +L
Sbjct: 284 NTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWL 323

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  147 bits (372), Expect = 6e-39
 Identities = 58/330 (17%), Positives = 95/330 (28%), Gaps = 49/330 (14%)

Query: 443 KAYKAPFFTKELEAILTEQG-TVSLECKVM-GIPTPQLIWYKDNKKIKAGDIFALT---- 496
            A        + E ++   G  V L C    G P    +W KD   +   +   +     
Sbjct: 4   AAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRL 63

Query: 497 ----ANPKDPSSLGTYTCEAVNCMGAAFS-TSRVIARGQQSFLDNDDVPFNSLMPPGPAP 551
               A+ +D    G Y+C            + RV         ++ +           AP
Sbjct: 64  QVLNASHEDS---GAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAP 120

Query: 552 IFIK----EVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLG 606
            + +    + + +      +    C     P P SI W  K G       +   +     
Sbjct: 121 YWTRPERMDKKLLAVPAANTVRFRCPAAGNPTP-SISWL-KNGREFRGEHRIGGIKLRHQ 178

Query: 607 GYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG 666
            +S+ +  +   D G + CV  +  G  + +   + VL    +R               G
Sbjct: 179 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTY-TLDVLERSPHRPILQAGLPANQTAVLG 237

Query: 667 L-VSFECKVVGFPTPTLQWFKDNEEL----------------KPGDVYQLTGTSSL---- 705
             V F CKV     P +QW K  E                    G          L    
Sbjct: 238 SDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHN 297

Query: 706 ------GSYCCVAKNVMGKAESSTQLTIED 729
                 G Y C+A N +G +  S  L +  
Sbjct: 298 VTFEDAGEYTCLAGNSIGFSHHSAWLVVLP 327

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  135 bits (340), Expect = 9e-35
 Identities = 62/361 (17%), Positives = 97/361 (26%), Gaps = 76/361 (21%)

Query: 344 SQVPDAPAFIRRL-HDIAVKVGTRARL--LVEIRSPTEIKIHWYRNDRKLEENKIYRTQH 400
            +  + P         +    G    L        P      W ++   L  ++      
Sbjct: 2   GRAAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGP-MGPTVWVKDGTGLVPSE-RVLVG 59

Query: 401 DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKA---------------- 444
                     + S  DSG ++C                   P +                
Sbjct: 60  PQRLQV---LNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVD 116

Query: 445 YKAPFFTKELEAILTEQ-----GTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANP 499
             AP++T+               TV   C   G PTP + W K+ ++ +           
Sbjct: 117 TGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLR 176

Query: 500 KDPSSL----------GTYTCEAVNCMGAAFSTS--RVIARGQQSFLDNDDVPFNSLMPP 547
               SL          G YTC   N  G+   T    V+ R                  P
Sbjct: 177 HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLER-----------------SP 219

Query: 548 GPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-----NKEGVVEASDKYHIMA 602
               +      N  A +G+     C+V     P  I W      N   V      Y  + 
Sbjct: 220 HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP-HIQWLKHVEVNGSKVGPDGTPYVTVL 278

Query: 603 DGLGGYSIEIN----YLEAV---DDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFV 655
              G  + +       L  V   D GE+ C+A +S G     +A++ VL      +   V
Sbjct: 279 KTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSH-HSAWLVVLPA----EEELV 333

Query: 656 E 656
           E
Sbjct: 334 E 334

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  128 bits (324), Expect = 1e-32
 Identities = 57/345 (16%), Positives = 90/345 (26%), Gaps = 77/345 (22%)

Query: 237 SQVPDAPAFIRRL-HDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHP-- 293
            +  + P         +    G    L           C               G  P  
Sbjct: 2   GRAAEVPGPEPGQQEQLVFGSGDAVEL----------SC------------PPPGGGPMG 39

Query: 294 -IF----GNRFRAINR--DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES-- 344
                  G       R   G   L +     +D G YS                  ++  
Sbjct: 40  PTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPS 99

Query: 345 ---------------QVPDAPAFIR----RLHDIAVKVGTRARLLVEIRSPTEIKIHWYR 385
                              AP + R        +AV      R            I W +
Sbjct: 100 SGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK 159

Query: 386 NDRKLE-ENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKA 444
           N R+   E++I   +     + + + SV   D G +TC+ EN  G    +  L VL    
Sbjct: 160 NGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP 219

Query: 445 YKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYK----DNKKIKAGDIFALTANP 499
           ++               G  V   CKV     P + W K    +  K+       +T   
Sbjct: 220 HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLK 279

Query: 500 --------KDPSSL----------GTYTCEAVNCMGAAFSTSRVI 526
                   K+   L          G YTC A N +G +  ++ ++
Sbjct: 280 TAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV 324

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  113 bits (285), Expect = 1e-27
 Identities = 60/360 (16%), Positives = 94/360 (26%), Gaps = 80/360 (22%)

Query: 130 SQVPDAPAFIRRL-HDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHP-- 186
            +  + P         +    G    L           C               G  P  
Sbjct: 2   GRAAEVPGPEPGQQEQLVFGSGDAVEL----------SC------------PPPGGGPMG 39

Query: 187 -IF----GNRFRAINR--DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES-- 237
                  G       R   G   L +     +D G YS                  ++  
Sbjct: 40  PTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPS 99

Query: 238 ---------------QVPDAPAFIR----RLHDIAVKVGTRARLLVEIR-SPT-EIKCQF 276
                              AP + R        +AV      R       +PT  I    
Sbjct: 100 SGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK 159

Query: 277 DLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTA 336
           +            G+H I G + R      +  L +  V   D G Y+    N+ G    
Sbjct: 160 N-GREFR------GEHRIGGIKLR----HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ 208

Query: 337 KFELSVESQVPDAP-AFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI 395
            + L V  + P  P        +    +G+      ++ S  +  I W ++         
Sbjct: 209 TYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVG 268

Query: 396 YRTQH-------------DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
                             D     + L +V+  D+G +TCLA N++G SH S  L VL  
Sbjct: 269 PDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPA 328

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  102 bits (256), Expect = 1e-23
 Identities = 46/282 (16%), Positives = 74/282 (26%), Gaps = 42/282 (14%)

Query: 90  RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES-----------------QV 132
             G   L +     +D G YS                  ++                   
Sbjct: 57  LVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVD 116

Query: 133 PDAPAFIR----RLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHP 186
             AP + R        +AV      R       +PT  I    +            G+H 
Sbjct: 117 TGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKN-GREFR------GEHR 169

Query: 187 IFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP-AF 245
           I G + R      +  L +  V   D G Y+    N+ G     + L V  + P  P   
Sbjct: 170 IGGIKLR----HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQ 225

Query: 246 IRRLHDIAVKVGTRARLLVEIRS-PT-EI---KCQFDLNNTIPFSFRAQGDHPIFGNRFR 300
                +    +G+      ++ S     I   K      + +                  
Sbjct: 226 AGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANT 285

Query: 301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
                    L++  V  +D G Y+  A N  G+S     L V
Sbjct: 286 TDKELEV--LSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVV 325

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 68.1 bits (166), Expect = 3e-12
 Identities = 33/177 (18%), Positives = 50/177 (28%), Gaps = 50/177 (28%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
           G PTP + W K+ ++ +               SL          G YTC   N  G+   
Sbjct: 149 GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ 208

Query: 52  TS--RVIARGQ------------QSFLDNDDVPFN-RAQGD------------------- 77
           T    V+ R              Q+ +   DV F+ +   D                   
Sbjct: 209 TYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVG 268

Query: 78  ------HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
                   +               L++  V  +D G Y+  A N  G+S     L V
Sbjct: 269 PDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVV 325

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 60.0 bits (145), Expect = 1e-09
 Identities = 19/91 (20%), Positives = 25/91 (27%), Gaps = 16/91 (17%)

Query: 848 PKFLEELKAVLS--EGGAVNLECKVI-GVPQPTLKWFKDGRELKAGDIHKIISG------ 898
           P      +  L    G AV L C    G P     W KDG  L   +   +         
Sbjct: 8   PGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLN 67

Query: 899 ---EDGTCCLGIYTCEAHNCMGTTSSSAALL 926
              ED     G Y+C            +  +
Sbjct: 68  ASHEDS----GAYSCRQRLTQRVLCHFSVRV 94

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  150 bits (379), Expect = 3e-40
 Identities = 53/305 (17%), Positives = 101/305 (33%), Gaps = 39/305 (12%)

Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY--NKEGVVEASDKYHIMADGLGGY 608
                     +  +G S    CQV      + I W+  N E +     +  ++ +     
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-L 667
           ++ I      D G +KCV T+  G +  +   V +     ++K  F  +       +G  
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI-----FQKLMFKNAPTPQEFKEGED 117

Query: 668 VSFECKVVGFPTPTLQWFKDNEEL--KPGDVYQLTGTSSL----------GSYCCVAKNV 715
               C VV    PT+ W     ++  K    + +   + L          G+Y C  + +
Sbjct: 118 AVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRIL 177

Query: 716 MGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFI--EGLKSCQATVNEEFKFTVQVS 773
                +   +                 +  N  P     + + +  A + +         
Sbjct: 178 ARGEINFKDIQ----------------VIVNVPPTVQARQSIVNATANLGQSVTLVCDAD 221

Query: 774 ISPEPKVSWFRDDQQVVESDNVKILK-ETLGVCHLKIHALEVADQAEWKCIATNDFGQSI 832
             PEP +SW +D + +   +        +     L I  ++  D+AE+ CIA N  G+  
Sbjct: 222 GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQD 281

Query: 833 TSCFL 837
            S  L
Sbjct: 282 ASIHL 286

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  146 bits (371), Expect = 3e-39
 Identities = 55/312 (17%), Positives = 95/312 (30%), Gaps = 62/312 (19%)

Query: 650 RKPRFVESLKAVMTDDG-LVSFECKVVGFPT-PTLQWFKDNEELKPGD------VYQLTG 701
           R  +            G    F C+V G      + WF  N E    +      V+    
Sbjct: 1   RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60

Query: 702 TSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKF 751
           +S+L          G Y CV     G    +T                 + +   +   F
Sbjct: 61  SSTLTIYNANIDDAGIYKCVVTAEDGTQSEAT-----------------VNVKIFQKLMF 103

Query: 752 IEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHA 811
                  +    E+      V  S  P + W    + V+   +V+ +  +     L+I  
Sbjct: 104 KNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY--LQIRG 161

Query: 812 LEVADQAEWKCIATNDFGQSITSCFLKLNV---PKHYKKPKFLEELKAVLSEGGAVNLEC 868
           ++  D+  ++C         I    +++ V   P    +   +    A  + G +V L C
Sbjct: 162 IKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVN---ATANLGQSVTLVC 218

Query: 869 KVIGVPQPTLKWFKDGRELKAGDIHKI---------------ISGEDGTCCLGIYTCEAH 913
              G P+PT+ W KDG  ++  +                   +   D       Y C A 
Sbjct: 219 DADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDE----AEYVCIAE 274

Query: 914 NCMGTTSSSAAL 925
           N  G   +S  L
Sbjct: 275 NKAGEQDASIHL 286

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  136 bits (343), Expect = 2e-35
 Identities = 44/311 (14%), Positives = 99/311 (31%), Gaps = 38/311 (12%)

Query: 350 PAFIRRLHDIAVKVGTRARLLVEI-RSPTEIKIHWYRNDRKL---EENKIYRTQHDGNFY 405
                      + VG     L ++     +  I W+  + +     + +I    +D +  
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 406 FIDLSSVSLFDSGRWTCLAENAVG-RSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-T 463
            + + + ++ D+G + C+     G +S  +  + +          F         ++G  
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK-----LMFKNAPTPQEFKEGED 117

Query: 464 VSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD--------PSSLGTYTCEAVNC 515
             + C V+    P +IW    + +             +         +  GTY CE    
Sbjct: 118 AVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRIL 177

Query: 516 MGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVL 575
                +   +             VP        P     + + N  A +G S  L C   
Sbjct: 178 ARGEINFKDIQVIVN--------VP--------PTVQARQSIVNATANLGQSVTLVCDAD 221

Query: 576 VPPWPRSIYWYNKEGVVEASDKYHIMA-DGLGGYSIEINYLEAVDDGEWKCVATSSSGVK 634
             P P ++ W      +E  ++             + I  ++  D+ E+ C+A + +G +
Sbjct: 222 GFPEP-TMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQ 280

Query: 635 QFSAAYVHVLM 645
             ++ ++ V  
Sbjct: 281 D-ASIHLKVFA 290

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  133 bits (337), Expect = 9e-35
 Identities = 52/315 (16%), Positives = 107/315 (33%), Gaps = 60/315 (19%)

Query: 446 KAPFFTKELEAILTEQG-TVSLECKVMGIPT-PQLIWYKDNKK--IKAGDIFALTANPKD 501
           +               G +    C+V G      + W+  N +         ++  N  D
Sbjct: 1   RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60

Query: 502 PSSL----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAP 551
            S+L          G Y C      G     +  +            +            
Sbjct: 61  SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVK-----------IF--------QKL 101

Query: 552 IFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG---VVEASDKYHIMADGLGGY 608
           +F       + K G  A++ C V+    P +I W   +G   +++   ++ ++++     
Sbjct: 102 MFKNAPTPQEFKEGEDAVIVCDVVSSLPP-TIIWK-HKGRDVILKKDVRFIVLSNN---- 155

Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSA-AYVHVLMPKNYRKPRFVESLKAVMTDDGL 667
            ++I  ++  D+G ++C     +  +       V V +P   +  + + +  A +     
Sbjct: 156 YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQS-- 213

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD-----VYQLTGTSSL----------GSYCCVA 712
           V+  C   GFP PT+ W KD E ++  +           +S L            Y C+A
Sbjct: 214 VTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIA 273

Query: 713 KNVMGKAESSTQLTI 727
           +N  G+ ++S  L +
Sbjct: 274 ENKAGEQDASIHLKV 288

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  114 bits (287), Expect = 4e-28
 Identities = 50/315 (15%), Positives = 90/315 (28%), Gaps = 36/315 (11%)

Query: 136 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFS--FRAQGDHPIFGN-RF 192
                      + VG                CQ   +        F   G+       R 
Sbjct: 3   LQVDIVPSQGEISVGESKFF----------LCQVAGDAKDKDISWFSPNGEKLSPNQQRI 52

Query: 193 RAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 251
             +  D  +  L I     DD G Y    + E G    + E +V  ++     F      
Sbjct: 53  SVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDG---TQSEATVNVKIFQKLMFKNAPTP 109

Query: 252 IAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE 309
              K G  A ++ ++  S    I  +                  +   +           
Sbjct: 110 QEFKEGEDAVIVCDVVSSLPPTIIWKHK-------------GRDVILKKDVRFIVLSNNY 156

Query: 310 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 369
           L IR +++ D G Y       +       ++ V   VP      + + +    +G    L
Sbjct: 157 LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTL 216

Query: 370 LVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL--SSVSLFDSGRWTCLAEN 426
           + +    P    + W ++   +E  +    +H  +    +L   +V   D   + C+AEN
Sbjct: 217 VCDADGFPE-PTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAEN 275

Query: 427 AVGRSHCSCELSVLV 441
             G    S  L V  
Sbjct: 276 KAGEQDASIHLKVFA 290

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =   99 bits (249), Expect = 4e-23
 Identities = 48/280 (17%), Positives = 79/280 (28%), Gaps = 55/280 (19%)

Query: 83  NRFRAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR 141
            R   +  D  +  L I     DD G Y    + E G    + E +V  ++     F   
Sbjct: 50  QRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDG---TQSEATVNVKIFQKLMFKNA 106

Query: 142 LHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDG 199
                 K G  A ++ ++  S    I  +                  +   +        
Sbjct: 107 PTPQEFKEGEDAVIVCDVVSSLPPTIIWKHK-------------GRDVILKKDVRFIVLS 153

Query: 200 RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTR 259
              L IR +++ D G Y       +       ++ V   VP      + + +    +G  
Sbjct: 154 NNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQS 213

Query: 260 ARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG-----------DHPIFGNRFRAINR---D 305
             L           C             A G             PI             D
Sbjct: 214 VTL----------VC------------DADGFPEPTMSWTKDGEPIENEEEDDEKHIFSD 251

Query: 306 GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
             +EL IR V ++D   Y   A N++G   A   L V ++
Sbjct: 252 DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 91.1 bits (226), Expect = 4e-20
 Identities = 43/283 (15%), Positives = 74/283 (26%), Gaps = 70/283 (24%)

Query: 4   PTPQLIWYKDNKK--IKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
               + W+  N +         ++  N  D S+L          G Y C      G    
Sbjct: 31  KDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE 90

Query: 52  TS---RVIAR-------GQQSFLDNDDVPFN-RAQG-----------DHPIFGNRFRAIN 89
            +   ++  +         Q F + +D                       +   +     
Sbjct: 91  ATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI 150

Query: 90  RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKV 149
                 L IR +++ D G Y       +       ++ V   VP      + + +    +
Sbjct: 151 VLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANL 210

Query: 150 GTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG-----------DHPIFGNRFRAINR- 197
           G    L           C             A G             PI           
Sbjct: 211 GQSVTL----------VC------------DADGFPEPTMSWTKDGEPIENEEEDDEKHI 248

Query: 198 --DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 238
             D  +EL IR V ++D   Y   A N++G   A   L V ++
Sbjct: 249 FSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 63.7 bits (155), Expect = 6e-11
 Identities = 29/167 (17%), Positives = 48/167 (28%), Gaps = 36/167 (21%)

Query: 1   MGIPTPQLIWYKDNKKIKAGDIFALTANPKD--------PSSLGTYTCEAVNCMGAAFST 52
           +    P +IW    + +             +         +  GTY CE         + 
Sbjct: 125 VSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINF 184

Query: 53  SRVIA--------RGQQSFLD-----NDDVPFN-RAQG-----------DHPIFGNRFRA 87
             +          + +QS ++        V     A G             PI       
Sbjct: 185 KDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDD 244

Query: 88  INR---DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 131
                 D  +EL IR V ++D   Y   A N++G   A   L V ++
Sbjct: 245 EKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 51.4 bits (123), Expect = 6e-07
 Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 20/120 (16%)

Query: 846 KKPKFLEELK-AVLSEGGAVNLECKVIGVPQ-PTLKWFKDGRELKAGDIHKI--ISGEDG 901
           +  +         +S G +    C+V G  +   + WF    E  + +  +I  +  +D 
Sbjct: 1   RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60

Query: 902 TCCL----------GIYTCEAHNCMGTTSSSAALL------GFEDKSQIEKAEEGKKALI 945
           +  L          GIY C      GT S +   +       F++    ++ +EG+ A+I
Sbjct: 61  SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  146 bits (369), Expect = 5e-40
 Identities = 41/206 (19%), Positives = 82/206 (39%), Gaps = 30/206 (14%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQV-SISPEPKVSWFRDDQQVVESDNVKI-LKETLGVCH 806
             F +   + +     + +F +Q   +S   KV++  +++++ E    K+ +    G+  
Sbjct: 3   DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62

Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKK--------------PKFLE 852
           + +  L+  D+  +     +    + ++  L  +V K  +K              P F+E
Sbjct: 63  MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 122

Query: 853 ELKAVLSEGGAVNLECKVIGVPQPT-LKWFKDGRELKAGDIHKIISGEDGTCCL------ 905
            L   ++    V L+CKV  + + T + W+KD RE+   + H     +DG C L      
Sbjct: 123 YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF---KDGICTLLITEFS 179

Query: 906 ----GIYTCEAHNCMGTTSSSAALLG 927
               GIY     +  G   S   L+ 
Sbjct: 180 KKDAGIYEVILKDDRGKDKSRLKLVD 205

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  131 bits (331), Expect = 6e-35
 Identities = 37/205 (18%), Positives = 75/205 (36%), Gaps = 31/205 (15%)

Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
             F +    + +    + R  ++    +   K+++  N++++ E   Y+   D N   I+
Sbjct: 3   DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62

Query: 409 L--SSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYK--------------APFFTK 452
           +    +   D G +T   ++    +H +  L   V K  +               P F +
Sbjct: 63  MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 122

Query: 453 ELEAILTEQGTVSLECKVMGIPTP-QLIWYKDNKKIKAGDIFALT----------ANPKD 501
            L   +T +  V L+CKV  I     ++WYKD ++I   +                + KD
Sbjct: 123 YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKD 182

Query: 502 PSSLGTYTCEAVNCMGAAFSTSRVI 526
               G Y     +  G   S  +++
Sbjct: 183 ---AGIYEVILKDDRGKDKSRLKLV 204

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  126 bits (317), Expect = 4e-33
 Identities = 41/208 (19%), Positives = 69/208 (33%), Gaps = 29/208 (13%)

Query: 548 GPAPIFIKEVENVKAKIGTSAILECQV-LVPPWPRSIYWYNKEGVVEASDKYHIMADGLG 606
           G  P F K    V+           Q   +      + +   E  +    KY +  D   
Sbjct: 1   GIDP-FTKSELAVEILEKGQVRFWMQAEKLSGNA-KVNYIFNEKEIFEGPKYKMHIDRNT 58

Query: 607 G-YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRK-------------P 652
           G   + +  L+  D+G +             +   V  +  K  ++             P
Sbjct: 59  GIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGP 118

Query: 653 RFVESLKAVMTDDGLVSFECKVVGFPTPT-LQWFKDNEELKPGDVYQL-TGTSSL----- 705
            FVE L   +T +  V  +CKV      T + W+KD  E+   + +    G  +L     
Sbjct: 119 HFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEF 178

Query: 706 -----GSYCCVAKNVMGKAESSTQLTIE 728
                G Y  + K+  GK +S  +L  E
Sbjct: 179 SKKDAGIYEVILKDDRGKDKSRLKLVDE 206

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  120 bits (303), Expect = 4e-31
 Identities = 38/205 (18%), Positives = 76/205 (37%), Gaps = 23/205 (11%)

Query: 652 PRFVESLKAV-MTDDGLVSFECKVV-GFPTPTLQWFKDNEELKPGDVYQL-----TGTSS 704
             F +S  AV + + G V F  +         + +  + +E+  G  Y++     TG   
Sbjct: 3   DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62

Query: 705 L----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSE-EDKLLLLTNNKAPKFIE 753
           +          G+Y    ++      S+  L  +  +    E E +       + P F+E
Sbjct: 63  MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 122

Query: 754 GLKSCQATVNEEFKFTVQVS-ISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHAL 812
            L S + T         +V+ I  E  + W++D++++   +         G+C L I   
Sbjct: 123 YL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD---GICTLLITEF 178

Query: 813 EVADQAEWKCIATNDFGQSITSCFL 837
              D   ++ I  +D G+  +   L
Sbjct: 179 SKKDAGIYEVILKDDRGKDKSRLKL 203

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  102 bits (255), Expect = 8e-25
 Identities = 30/219 (13%), Positives = 72/219 (32%), Gaps = 38/219 (17%)

Query: 243 PAFIRRLHDIAVKVGTRARLLVEIR--SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 299
             F +    + +    + R  ++    S   ++   F+             +  IF    
Sbjct: 3   DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFN-------------EKEIFEGPK 49

Query: 300 RAINRD---GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV-------------- 342
             ++ D   G  E+ + +++ +D G Y+    +    + +   L                
Sbjct: 50  YKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQR 109

Query: 343 -ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQH 400
            E      P F+  L    V       L  ++     E  I WY+++R++  ++ +  + 
Sbjct: 110 QEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD 168

Query: 401 DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
                 I  +  S  D+G +  + ++  G+     +L  
Sbjct: 169 GICTLLI--TEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  100 bits (250), Expect = 4e-24
 Identities = 34/204 (16%), Positives = 69/204 (33%), Gaps = 17/204 (8%)

Query: 447 APFFTKELEAILTEQGTVSLECKVM-GIPTPQLIWYKDNKKIKAGD-----------IFA 494
            PF   EL   + E+G V    +        ++ +  + K+I  G            I  
Sbjct: 3   DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62

Query: 495 LTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFI 554
           +          GTYT +  +      ST  ++    +      +      +     P F+
Sbjct: 63  MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQG-PHFV 121

Query: 555 KEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINY 614
           + + + +     + +L+C+V        I WY K+    + D+ H   DG+   ++ I  
Sbjct: 122 EYL-SWEVTGECNVLLKCKVANIKKETHIVWY-KDEREISVDEKHDFKDGIC--TLLITE 177

Query: 615 LEAVDDGEWKCVATSSSGVKQFSA 638
               D G ++ +     G  +   
Sbjct: 178 FSKKDAGIYEVILKDDRGKDKSRL 201

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 91.5 bits (227), Expect = 6e-21
 Identities = 34/233 (14%), Positives = 70/233 (30%), Gaps = 52/233 (22%)

Query: 136 PAFIRRLHDIAVKVGTRARLLVEIR--SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
             F +    + +    + R  ++    S   ++   F+             +  IF    
Sbjct: 3   DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFN-------------EKEIFEGPK 49

Query: 193 RAINRD---GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV-------------- 235
             ++ D   G  E+ + +++ +D G Y+    +    + +   L                
Sbjct: 50  YKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQR 109

Query: 236 -ESQVPDAPAFIRRLHDIAVKVGTRARLLVEI---RSPTEIKCQFDLNNTIPFSFRAQGD 291
            E      P F+  L    V       L  ++   +  T I    D             +
Sbjct: 110 QEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKD-------------E 155

Query: 292 HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
             I  +      +DG   L I    + D G Y V   ++ G   ++ +L  E+
Sbjct: 156 REISVDEKHDF-KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 207

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 80.0 bits (197), Expect = 4e-17
 Identities = 30/182 (16%), Positives = 57/182 (31%), Gaps = 36/182 (19%)

Query: 77  DHPIFGNRFRAINRD---GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV----- 128
           +  IF      ++ D   G  E+ + +++ +D G Y+    +    + +   L       
Sbjct: 41  EKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKK 100

Query: 129 ----------ESQVPDAPAFIRRLHDIAVKVGTRARLLVEI---RSPTEIKCQFDLNNTI 175
                     E      P F+  L    V       L  ++   +  T I    D     
Sbjct: 101 LQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKD----- 154

Query: 176 PFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
                   +  I  +      +DG   L I    + D G Y V   ++ G   ++ +L  
Sbjct: 155 --------EREISVDEKHDF-KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205

Query: 236 ES 237
           E+
Sbjct: 206 EA 207

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 78.1 bits (192), Expect = 2e-16
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 27/163 (16%)

Query: 848 PKFLEELKAV-LSEGGAVNLECKVI-GVPQPTLKWFKDGRELKAGDIHKI-ISGEDGTCC 904
             F +   AV + E G V    +         + +  + +E+  G  +K+ I    G   
Sbjct: 3   DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62

Query: 905 L----------GIYTCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALIVKDP----- 949
           +          G YT +  +   T  S+  L+G   K   ++AE  ++  I K       
Sbjct: 63  MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 122

Query: 950 SLSTIQEEGTS-----EIYDTPMASIEEREISFSFDGKEVSVS 987
            LS       +     ++ +      +E  I +  D +E+SV 
Sbjct: 123 YLSWEVTGECNVLLKCKVANIK----KETHIVWYKDEREISVD 161

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 68.8 bits (168), Expect = 3e-13
 Identities = 22/180 (12%), Positives = 45/180 (25%), Gaps = 52/180 (28%)

Query: 2   GIPTPQLIWYKDNKKIKAGD-----------IFALTANPKDPSSLGTYTCEAVNCMGAAF 50
                ++ +  + K+I  G            I  +          GTYT +  +      
Sbjct: 29  LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNH 88

Query: 51  STSRVIARGQQSFLDNDDVPFN----------------------------RAQG------ 76
           ST  ++    +      +                                +         
Sbjct: 89  STVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETH 148

Query: 77  ------DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 130
                 +  I  +      +DG   L I    + D G Y V   ++ G   ++ +L  E+
Sbjct: 149 IVWYKDEREISVDEKHDF-KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 207

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  148 bits (376), Expect = 1e-39
 Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 12/190 (6%)

Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVV-ESDNVKILKETLGVCH 806
           AP F E L++             +V+  P+P V W+R  ++++ +    +I +   G   
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63

Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVN 865
           L I ++   D   ++  ATN  G    +  L++ VP     PK LE + AV    G  V+
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123

Query: 866 LECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCEAHNC 915
           ++    G P P + W K    +     +++I     T  +          G Y   A N 
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183

Query: 916 MGTTSSSAAL 925
            G    +  L
Sbjct: 184 FGIDQKTVEL 193

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  124 bits (312), Expect = 3e-31
 Identities = 39/203 (19%), Positives = 71/203 (34%), Gaps = 29/203 (14%)

Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKP-GDVYQLT----GTSSL 705
           P F E L+ +        +  CKV G P P ++W++  +E+   G  Y++     G   L
Sbjct: 5   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64

Query: 706 ----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL 755
                       Y   A N  G    +  L +E                    PK +EG+
Sbjct: 65  IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVP-------------AKIHLPKTLEGM 111

Query: 756 KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVA 815
            +  A   E     +  S  P+P ++W +    +  + + +++        +  + +E  
Sbjct: 112 GAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERK 171

Query: 816 DQAEWKCIATNDFGQSITSCFLK 838
           D   +   A N FG    +  L 
Sbjct: 172 DAGFYVVCAKNRFGIDQKTVELD 194

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  118 bits (298), Expect = 2e-29
 Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 18/196 (9%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMADGLGGY 608
           AP F +E+ N+  +  ++A L C+V   P P  + WY   + ++    KY I     G +
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKP-IVKWYRQGKEIIADGLKYRIQEFKGGYH 62

Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-L 667
            + I  +   D   ++  AT+  G    + A + V +P     P+ +E + AV    G +
Sbjct: 63  QLIIASVTDDDATVYQVRATNQGGSVSGT-ASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL--------------GSYCCVAK 713
           VS +    G P P + W K  + +     YQ+  T S               G Y   AK
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181

Query: 714 NVMGKAESSTQLTIED 729
           N  G  + + +L + D
Sbjct: 182 NRFGIDQKTVELDVAD 197

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  112 bits (281), Expect = 4e-27
 Identities = 40/191 (20%), Positives = 74/191 (38%), Gaps = 13/191 (6%)

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKL--EENKIYRTQHDGNFYF 406
           AP F   L ++ V+  + A L+ ++    +  + WYR  +++  +  K    +  G ++ 
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63

Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVS 465
           + ++SV+  D+  +   A N  G    +  L V VP     P   + + A+   +G  VS
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123

Query: 466 LECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNC 515
           ++    G P P + W K    I     + +       S +          G Y   A N 
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183

Query: 516 MGAAFSTSRVI 526
            G    T  + 
Sbjct: 184 FGIDQKTVELD 194

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  108 bits (271), Expect = 8e-26
 Identities = 44/209 (21%), Positives = 75/209 (35%), Gaps = 17/209 (8%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 299
           AP F   L ++ V+  + A L+ ++   P   +K        I             G ++
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQ-GKEIIAD----------GLKY 52

Query: 300 RAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ-VPDAPAFIRRLH 357
           R     G   +L I  V  DD   Y V A+N+ G  +    L VE       P  +  + 
Sbjct: 53  RIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMG 112

Query: 358 DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFY-FIDLSSVSLFD 416
            +    G    + +      +  I W +    ++ N  Y+     +F   +  + V   D
Sbjct: 113 AVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKD 172

Query: 417 SGRWTCLAENAVGRSHCSCELSVL-VPKA 444
           +G +   A+N  G    + EL V  VP  
Sbjct: 173 AGFYVVCAKNRFGIDQKTVELDVADVPDP 201

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  105 bits (263), Expect = 8e-25
 Identities = 65/355 (18%), Positives = 106/355 (29%), Gaps = 88/355 (24%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
           AP F   L ++ V+  + A L+ ++   P   +K        I             G ++
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQ-GKEIIAD----------GLKY 52

Query: 193 RAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ-VPDAPAFIRRLH 250
           R     G   +L I  V  DD   Y V A+N+ G  +    L VE       P  +  + 
Sbjct: 53  RIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMG 112

Query: 251 DIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFR-AINRDGRTE 309
            +    G    +          K  F        +++   D       ++  + R   + 
Sbjct: 113 AVHALRGEVVSI----------KIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSL 162

Query: 310 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 369
           +    V R D G Y V A N  G      EL V + VPD P  ++               
Sbjct: 163 VFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV-ADVPDPPRGVK--------------- 206

Query: 370 LVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGN----FYFIDLSSVSLFDSGRWTCL-- 423
            V   S   + + W                 DG      Y ++  +     + RW  +  
Sbjct: 207 -VSDVSRDSVNLTWTEP------------ASDGGSKITNYIVEKCAT---TAERWLRVGQ 250

Query: 424 ----------------------AENAVGRSHCSCELSVLVPK--AYKAPFFTKEL 454
                                 AEN  G S  S      + K    +A  + +E+
Sbjct: 251 ARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTRAMNYDEEV 305

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  100 bits (250), Expect = 4e-23
 Identities = 40/204 (19%), Positives = 69/204 (33%), Gaps = 28/204 (13%)

Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKA-GDIFALTANPKDPSS 504
           AP F +EL  +        +L CKV G P P + WY+  K+I A G  + +         
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63

Query: 505 L----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFI 554
           L            Y   A N  G+   T+ +                         P  +
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI---------------HLPKTL 108

Query: 555 KEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINY 614
           + +  V A  G    ++      P P  I W   + +++ +  Y ++        +  N 
Sbjct: 109 EGMGAVHALRGEVVSIKIPFSGKPDP-VITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNG 167

Query: 615 LEAVDDGEWKCVATSSSGVKQFSA 638
           +E  D G +   A +  G+ Q + 
Sbjct: 168 VERKDAGFYVVCAKNRFGIDQKTV 191

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 92.5 bits (230), Expect = 2e-20
 Identities = 38/169 (22%), Positives = 59/169 (34%), Gaps = 14/169 (8%)

Query: 82  GNRFRAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ-VPDAPAFI 139
           G ++R     G   +L I  V  DD   Y V A+N+ G  +    L VE       P  +
Sbjct: 49  GLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTL 108

Query: 140 RRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFR-AINRD 198
             +  +    G    +          K  F        +++   D       ++  + R 
Sbjct: 109 EGMGAVHALRGEVVSI----------KIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRS 158

Query: 199 GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 247
             + +    V R D G Y V A N  G      EL V + VPD P  ++
Sbjct: 159 FTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV-ADVPDPPRGVK 206

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 77.1 bits (190), Expect = 2e-15
 Identities = 36/178 (20%), Positives = 53/178 (29%), Gaps = 40/178 (22%)

Query: 2   GIPTPQLIWYKDNKKIKA-GDIFALTANPKDPSSL----------GTYTCEAVNCMGAAF 50
           G P P + WY+  K+I A G  + +         L            Y   A N  G+  
Sbjct: 30  GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVS 89

Query: 51  STSRVI--------------ARGQQSFLDNDDVPFN-RAQGDHPI------------FGN 83
            T+ +                 G    L  + V       G                   
Sbjct: 90  GTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNG 149

Query: 84  RFR-AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 140
            ++  + R   + +    V R D G Y V A N  G      EL V + VPD P  ++
Sbjct: 150 HYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV-ADVPDPPRGVK 206

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  143 bits (363), Expect = 4e-39
 Identities = 44/199 (22%), Positives = 70/199 (35%), Gaps = 16/199 (8%)

Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLG 803
           T    P+F                F  Q +  P PK+ W +  ++V       I  +   
Sbjct: 2   TGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGS 61

Query: 804 VCHLKIHALEVA-DQAEWKCIATNDFGQSITSCFLKLNVPKHYKK--PKFLEELK-AVLS 859
              L+I  L    D+A ++C+A+N+ G+   S  L +       +  P      +  V+ 
Sbjct: 62  GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVE 121

Query: 860 EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIIS--GEDGTCCL----------GI 907
                 + C   G P P + WFKD   +   + +  I     +    L          G 
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGK 181

Query: 908 YTCEAHNCMGTTSSSAALL 926
           Y C A N  GT  S+ A L
Sbjct: 182 YECVATNSAGTRYSAPANL 200

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  139 bits (351), Expect = 1e-37
 Identities = 49/213 (23%), Positives = 80/213 (37%), Gaps = 30/213 (14%)

Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT----GTSSL 705
            PRF  +        G + SF C+  G P P + W K  +++       +       S L
Sbjct: 6   PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVL 65

Query: 706 -----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEG 754
                        Y CVA N +G+   ST+LT+                     P    G
Sbjct: 66  RIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRG-----------FPTIDMG 114

Query: 755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILK--ETLGVCHLKIHAL 812
            +                S +P+P+++WF+D   V  S+N   +K   +  +  L+I   
Sbjct: 115 PQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQS 174

Query: 813 EVADQAEWKCIATNDFGQSIT-SCFLKLNVPKH 844
           E +DQ +++C+ATN  G   +    L +   KH
Sbjct: 175 EESDQGKYECVATNSAGTRYSAPANLYVRGTKH 207

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  126 bits (318), Expect = 5e-33
 Identities = 45/203 (22%), Positives = 72/203 (35%), Gaps = 18/203 (8%)

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQ-HDGNFYFI 407
            P F R   D     G  A  + +       KI W +  +K+   +    +  DG+   +
Sbjct: 6   PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVL 65

Query: 408 DLSSVSLF-DSGRWTCLAENAVGRSHCSCELSVLVP--KAYKAPFFTKELEAILTEQG-T 463
            +  +    D   + C+A N VG    S  L+VL         P      +  + E+  T
Sbjct: 66  RIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRT 125

Query: 464 VSLECKVMGIPTPQLIWYKDNKKIKA------------GDIFALTANPKDPSSLGTYTCE 511
            ++ C   G P P++ W+KD   +                I AL     + S  G Y C 
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECV 185

Query: 512 AVNCMGAAFSTS-RVIARGQQSF 533
           A N  G  +S    +  RG +  
Sbjct: 186 ATNSAGTRYSAPANLYVRGTKHH 208

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  120 bits (302), Expect = 6e-31
 Identities = 47/217 (21%), Positives = 81/217 (37%), Gaps = 30/217 (13%)

Query: 446 KAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSS 504
             P FT+         G   S  C+  G P P+++W K  KK+       +  +    S 
Sbjct: 5   TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSV 64

Query: 505 L-----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIF 553
           L             Y C A N +G    ++R+             V     +P G  P  
Sbjct: 65  LRIQPLRTPRDEAIYECVASNNVGEISVSTRLT------------VLREDQIPRGF-PTI 111

Query: 554 IKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG--VVEASDKYHI-MADGLGGYSI 610
               +    +   +A + C     P P  I W+ K+   V  +++   I         ++
Sbjct: 112 DMGPQLKVVERTRTATMLCAASGNPDP-EITWF-KDFLPVDTSNNNGRIKQLRSESIGAL 169

Query: 611 EINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPK 647
           +I   E  D G+++CVAT+S+G +  + A ++V   K
Sbjct: 170 QIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTK 206

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  107 bits (269), Expect = 2e-26
 Identities = 39/214 (18%), Positives = 66/214 (30%), Gaps = 25/214 (11%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 299
            P F R   D     G  A  + +    P  +I                     +   RF
Sbjct: 6   PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKK-------------GKKVSNQRF 52

Query: 300 RAINRD--GRTELNIRRVRR-DDGGRYSVTASNESGYSTAKFELSV---ESQVPDAPAFI 353
             I  D    + L I+ +R   D   Y   ASN  G  +    L+V   +      P   
Sbjct: 53  EVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTID 112

Query: 354 RRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKL---EENKIYRTQHDGNFYFIDLS 410
                  V+    A +L       + +I W+++   +     N   +     +   + + 
Sbjct: 113 MGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIE 172

Query: 411 SVSLFDSGRWTCLAENAVGRSH-CSCELSVLVPK 443
                D G++ C+A N+ G  +     L V   K
Sbjct: 173 QSEESDQGKYECVATNSAGTRYSAPANLYVRGTK 206

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 93.7 bits (233), Expect = 9e-22
 Identities = 44/220 (20%), Positives = 66/220 (30%), Gaps = 33/220 (15%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
            P F R   D     G  A  + +    P  +I                     +   RF
Sbjct: 6   PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKK-------------GKKVSNQRF 52

Query: 193 RAINRD--GRTELNIRRVRR-DDGGRYSVTASNESGYSTAKFELSV---ESQVPDAPAFI 246
             I  D    + L I+ +R   D   Y   ASN  G  +    L+V   +      P   
Sbjct: 53  EVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTID 112

Query: 247 RRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINR 304
                  V+    A +L     +P  EI    D    +  S            R + +  
Sbjct: 113 MGPQLKVVERTRTATMLCAASGNPDPEITWFKD-FLPVDTSNN--------NGRIKQLRS 163

Query: 305 DGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVE 343
           +    L I +    D G+Y   A+N +G   +A   L V 
Sbjct: 164 ESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR 203

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 84.5 bits (209), Expect = 1e-18
 Identities = 36/169 (21%), Positives = 55/169 (32%), Gaps = 18/169 (10%)

Query: 77  DHPIFGNRFRAINRD--GRTELNIRRVRR-DDGGRYSVTASNESGYSTAKFELSV---ES 130
              +   RF  I  D    + L I+ +R   D   Y   ASN  G  +    L+V   + 
Sbjct: 44  GKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQ 103

Query: 131 QVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF 188
                P          V+    A +L     +P  EI    D    +  S          
Sbjct: 104 IPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKD-FLPVDTSNN-------- 154

Query: 189 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVE 236
             R + +  +    L I +    D G+Y   A+N +G   +A   L V 
Sbjct: 155 NGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR 203

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 72.9 bits (179), Expect = 1e-14
 Identities = 33/172 (19%), Positives = 53/172 (30%), Gaps = 44/172 (25%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL-----------GTYTCEAVNCMGAAF 50
           G P P+++W K  KK+       +  +    S L             Y C A N +G   
Sbjct: 32  GDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEIS 91

Query: 51  STSRV-------IARGQQSFL---------DNDDVPFN-RAQG-----------DHPI-- 80
            ++R+       I RG  +                     A G             P+  
Sbjct: 92  VSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDT 151

Query: 81  --FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVE 129
                R + +  +    L I +    D G+Y   A+N +G   +A   L V 
Sbjct: 152 SNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR 203

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 13/75 (17%)

Query: 2   GIPTPQLIWYKDNKKIKA------------GDIFALTANPKDPSSLGTYTCEAVNCMGAA 49
           G P P++ W+KD   +                I AL     + S  G Y C A N  G  
Sbjct: 134 GNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTR 193

Query: 50  FSTS-RVIARGQQSF 63
           +S    +  RG +  
Sbjct: 194 YSAPANLYVRGTKHH 208

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score =  146 bits (369), Expect = 1e-37
 Identities = 65/497 (13%), Positives = 116/497 (23%), Gaps = 85/497 (17%)

Query: 455 EAILTEQGTVSLECKVMGIPTPQLIWYK--DNKKIKAGDIFALTANPKDPSSLGTYTCEA 512
           + IL   G+V + C         L        K++             +        C +
Sbjct: 8   KVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYS 67

Query: 513 VNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILEC 572
            NC     +                      L                   +G +  L C
Sbjct: 68  -NCPDGQSTAK------------------TFLTVYWTPERVELAPLPSWQPVGKNLTLRC 108

Query: 573 QVL-VPPWPR-SIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSS 630
           QV    P    ++     E  ++               +  +          + C     
Sbjct: 109 QVEGGAPRANLTVVLLRGEKELKREP----AVGEPAEVTTTVLVRRDHHGANFSCRTELD 164

Query: 631 SG------VKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGF---PTPT 681
                    +  SA Y           P+ V      +      +  C + G        
Sbjct: 165 LRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQ--GTVVCSLDGLFPVSEAQ 222

Query: 682 LQWFKDNEELKP-----GDVYQLTGTSSL-----GSYCCVAKNVMGKAESSTQLTIEDIR 731
           +     ++ L P      D +    + S+     G+       ++G     T  T     
Sbjct: 223 VHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQT----- 277

Query: 732 NHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVE 791
                      +T    P     L   + +   E     +    P  KV+      Q + 
Sbjct: 278 -----------VTIYSFPAPNVILTKPEVSEGTEVTVKCEAH--PRAKVTLNGVPAQPLG 324

Query: 792 SDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFL 851
                          L + A    +   + C AT +    +        +   Y  P+  
Sbjct: 325 PRA-----------QLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYG-PRLD 372

Query: 852 EEL---KAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIY 908
           E          E       C+  G P P LK  KDG           ++ +      G Y
Sbjct: 373 ERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLE----GTY 428

Query: 909 TCEAHNCMGTTSSSAAL 925
            C A +  G  +    +
Sbjct: 429 LCRARSTQGEVTREVTV 445

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score =  134 bits (338), Expect = 1e-33
 Identities = 53/492 (10%), Positives = 124/492 (25%), Gaps = 75/492 (15%)

Query: 261 RLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDG 320
           ++++       + C    +  +                 + +   G            + 
Sbjct: 8   KVILPRGGSVLVTCSTSCDQPMLLGIETPLPK-------KELLLPGNNRKVYELSNVQED 60

Query: 321 GRYSVTASNESGYSTAKFELSVESQVPDAPAFIR-RLHDIAVKVGTRARLLVEIRS---P 376
            +    ++   G STAK  L+V       P  +          VG    L  ++      
Sbjct: 61  SQPMCYSNCPDGQSTAKTFLTV----YWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPR 116

Query: 377 TEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCE 436
             + +   R +++L+         +       +          ++C  E  +        
Sbjct: 117 ANLTVVLLRGEKELKREPAVGEPAEVTTT---VLVRRDHHGANFSCRTELDLRPQGLELF 173

Query: 437 LSVLVPKAYKAPFFTK-----ELEAILTEQGTVSLECKVMGI---PTPQLIWYKDNKKIK 488
            +   P   +               +L      ++ C + G+      Q+     ++++ 
Sbjct: 174 ENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN 233

Query: 489 A-----GDIFALTANPK-DPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFN 542
                  D F+  A+        GT        +G     +                   
Sbjct: 234 PTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIY------------ 281

Query: 543 SLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMA 602
                   P     +   +   GT   ++C+        ++     + +   +       
Sbjct: 282 ------SFPAPNVILTKPEVSEGTEVTVKCEAHPRAKV-TLNGVPAQPLGPRA------- 327

Query: 603 DGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQF---SAAYVHVLMPKNYRKPRFVESL- 658
                  + +      +   + C AT     +         + VL       PR  E   
Sbjct: 328 ------QLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYG-----PRLDERDC 376

Query: 659 --KAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGSYCCVAKNVM 716
                  ++   +  C+  G P P L+  KD     P            G+Y C A++  
Sbjct: 377 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGTYLCRARSTQ 436

Query: 717 GKAESSTQLTIE 728
           G+      + + 
Sbjct: 437 GEVTREVTVNVL 448

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score =  133 bits (335), Expect = 3e-33
 Identities = 62/508 (12%), Positives = 127/508 (25%), Gaps = 88/508 (17%)

Query: 358 DIAVKVGTRARL--LVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLF 415
            + +  G    +        P  + I      ++L            N    +LS+V   
Sbjct: 8   KVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKEL-------LLPGNNRKVYELSNVQ-- 58

Query: 416 DSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMG-- 472
           +  +  C +    G+S     L+V                      G  ++L C+V G  
Sbjct: 59  EDSQPMCYSNCPDGQSTAKTFLTVYWT----PERVELAPLPSWQPVGKNLTLRCQVEGGA 114

Query: 473 -IPTPQLIWYKDNKKIK--------AGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTS 523
                 ++  +  K++K        A     +            ++C     +       
Sbjct: 115 PRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHG--ANFSCRTELDLR---PQG 169

Query: 524 RVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQV--LVPPWPR 581
             +     +          +  P   +P  ++          T   + C +  L P    
Sbjct: 170 LELFENTSAPYQLQTFVLPATPPQLVSPRVLEV--------DTQGTVVCSLDGLFPVSEA 221

Query: 582 SIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYV 641
            ++    +  +  +  Y    D     +      E        C     +  ++     V
Sbjct: 222 QVHLALGDQRLNPTVTYGN--DSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQT-V 278

Query: 642 HVLMPKNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT 700
            +     Y  P     L      +G  V+ +C+       TL           G   QL 
Sbjct: 279 TI-----YSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQ---PLGPRAQLL 330

Query: 701 GTSSL----GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLK 756
             ++      S+ C A   +         T E              L     P+  E   
Sbjct: 331 LKATPEDNGRSFSCSATLEVAGQLIHKNQTRE--------------LRVLYGPRLDERDC 376

Query: 757 SCQATVNE--EFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEV 814
               T  E  +     Q   +P P++   +D    +       +                
Sbjct: 377 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTR-------------- 422

Query: 815 ADQAEWKCIATNDFGQSITSCFLKLNVP 842
             +  + C A +  G+      + +  P
Sbjct: 423 DLEGTYLCRARSTQGEVTREVTVNVLSP 450

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score =  114 bits (287), Expect = 4e-27
 Identities = 44/380 (11%), Positives = 93/380 (24%), Gaps = 49/380 (12%)

Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEA 617
             V    G S ++ C       P  +             K  ++  G      E++ ++ 
Sbjct: 7   SKVILPRGGSVLVTCSTSCDQ-PMLLGIETP------LPKKELLLPGNNRKVYELSNVQ- 58

Query: 618 VDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVG- 676
            +D +  C +    G             P+       +  L +       ++  C+V G 
Sbjct: 59  -EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVE----LAPLPSWQPVGKNLTLRCQVEGG 113

Query: 677 --FPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCVAKNVMGKAESSTQ 724
                 T+   +  +ELK           +            ++ C  +  +        
Sbjct: 114 APRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELF 173

Query: 725 LTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL-KSCQATVNEEFKFTVQVS---ISPEPKV 780
                     +             P     L       V+ +      +       E +V
Sbjct: 174 ENTSAPYQLQTFV----------LPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQV 223

Query: 781 SWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLN 840
                DQ++  +  V    ++           E        C          T   + + 
Sbjct: 224 HLALGDQRL--NPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIY 281

Query: 841 VPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGED 900
                     +   K  +SEG  V ++C+     + TL             +    + ED
Sbjct: 282 SF----PAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPED 337

Query: 901 GTCCLGIYTCEAHNCMGTTS 920
                  ++C A   +    
Sbjct: 338 NG---RSFSCSATLEVAGQL 354

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score =  111 bits (278), Expect = 7e-26
 Identities = 57/469 (12%), Positives = 122/469 (26%), Gaps = 75/469 (15%)

Query: 4   PTPQLIWYK--DNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSR------- 54
               L        K++             +        C + NC     +          
Sbjct: 27  QPMLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYS-NCPDGQSTAKTFLTVYWT 85

Query: 55  ----VIARGQQSFLDNDDVPFN-RAQGDHPIFG------------NRFRAINRDGRTELN 97
                +A          ++    + +G  P                R  A+         
Sbjct: 86  PERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTT 145

Query: 98  IRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLV 157
           +   R   G  +S     +      +   +       AP  ++     A      +  ++
Sbjct: 146 VLVRRDHHGANFSCRTELDLRPQGLELFENTS-----APYQLQTFVLPATPPQLVSPRVL 200

Query: 158 EIRSPTEIKCQFDLNNTIPFS--FRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGR 215
           E+ +   + C  D    +  +    A GD  +  N       D  +      V  +D G 
Sbjct: 201 EVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL--NPTVTYGNDSFSAKASVSVTAEDEGT 258

Query: 216 YSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQ 275
             +T +   G  + +   +V       PA    L    V  GT   +  E     ++   
Sbjct: 259 QRLTCAVILGNQSQETLQTVTIYSF--PAPNVILTKPEVSEGTEVTVKCEAHPRAKVT-- 314

Query: 276 FDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYST 335
                             + G   + +    R +L ++    D+G  +S +A+ E     
Sbjct: 315 ------------------LNGVPAQPLGP--RAQLLLKATPEDNGRSFSCSATLEVAGQL 354

Query: 336 AKFELSVESQVPDAPAFIRRLH--DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN 393
                + E +V   P    R    +      ++   + +       ++   ++       
Sbjct: 355 IHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI 414

Query: 394 KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
                         +  +V+    G + C A +  G       ++VL P
Sbjct: 415 G-------------ESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 450

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 94.9 bits (235), Expect = 2e-20
 Identities = 51/385 (13%), Positives = 98/385 (25%), Gaps = 94/385 (24%)

Query: 3   IPTPQLIWYKDNKKIK--------AGDIFALTANPKDPSSLGTYTCEA---VNCMGAAFS 51
                ++  +  K++K        A     +            ++C     +   G    
Sbjct: 116 RANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHG--ANFSCRTELDLRPQGLELF 173

Query: 52  TSRVIARGQQSFLDNDDVPFN----------------RAQGDHPIFGNRFR--------- 86
            +       Q+F+     P                     G  P+   +           
Sbjct: 174 ENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN 233

Query: 87  ---AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 143
                  D  +      V  +D G   +T +   G  + +   +V       PA    L 
Sbjct: 234 PTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF--PAPNVILT 291

Query: 144 DIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTEL 203
              V  GT   +  E     ++                     + G   + +    R +L
Sbjct: 292 KPEVSEGTEVTVKCEAHPRAKVT--------------------LNGVPAQPLGP--RAQL 329

Query: 204 NIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH--DIAVKVGTRAR 261
            ++    D+G  +S +A+ E          + E +V   P    R    +      ++  
Sbjct: 330 LLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQT 389

Query: 262 LLVEIRS--PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDD 319
            + +       E+KC  D    +P                               V RD 
Sbjct: 390 PMCQAWGNPLPELKCLKDGTFPLPIG-------------------------ESVTVTRDL 424

Query: 320 GGRYSVTASNESGYSTAKFELSVES 344
            G Y   A +  G  T +  ++V S
Sbjct: 425 EGTYLCRARSTQGEVTREVTVNVLS 449

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 57.2 bits (137), Expect = 2e-08
 Identities = 22/149 (14%), Positives = 40/149 (26%), Gaps = 24/149 (16%)

Query: 1   MGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIAR-- 58
              P  ++           G    L        +  +++C A   +              
Sbjct: 306 EAHPRAKVTLNG-VPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELR 364

Query: 59  -------------GQQSFLDNDDVPFN-RAQGDHPIFGNRFRAINRDGRTEL---NIRRV 101
                        G  ++ +N       +A G+        +   +DG   L       V
Sbjct: 365 VLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLP---ELK-CLKDGTFPLPIGESVTV 420

Query: 102 RRDDGGRYSVTASNESGYSTAKFELSVES 130
            RD  G Y   A +  G  T +  ++V S
Sbjct: 421 TRDLEGTYLCRARSTQGEVTREVTVNVLS 449

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  138 bits (350), Expect = 2e-37
 Identities = 27/203 (13%), Positives = 66/203 (32%), Gaps = 16/203 (7%)

Query: 656 ESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL------- 705
             LK   T +G+  +           + W  +   ++  D  +         L       
Sbjct: 9   TDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTP 68

Query: 706 ---GSYCCVAKNVMGKAESSTQLTIE---DIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQ 759
              G Y     +     + +  L+ +   +         +  +   N+A           
Sbjct: 69  NDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVT 128

Query: 760 ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAE 819
               +    T  V   P P+VSW ++++ + ++D+  +  E     +  I+ +  AD  +
Sbjct: 129 IQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGK 188

Query: 820 WKCIATNDFGQSITSCFLKLNVP 842
           +  +  N +G   +   + + +P
Sbjct: 189 YGLVVKNKYGSETSDFTVSVFIP 211

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  132 bits (334), Expect = 3e-35
 Identities = 36/193 (18%), Positives = 62/193 (32%), Gaps = 29/193 (15%)

Query: 761 TVNEEFKFTVQVSIS-PEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAE 819
           +  E  +    V+    + KV+W  +   +  SD VK          L+I+     D+ +
Sbjct: 15  STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTG-EQIWLQINEPTPNDKGK 73

Query: 820 WKCIATNDFGQSITSCFLKLNVPKHYK---------------KPKFLEELKAVLS--EGG 862
           +     +       +  L                        + + L  L  V++  EG 
Sbjct: 74  YVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGK 133

Query: 863 AVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCEA 912
           A+NL C V G P P + W K+ + L   D   +      T             G Y    
Sbjct: 134 ALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVV 193

Query: 913 HNCMGTTSSSAAL 925
            N  G+ +S   +
Sbjct: 194 KNKYGSETSDFTV 206

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  125 bits (316), Expect = 9e-33
 Identities = 29/192 (15%), Positives = 63/192 (32%), Gaps = 28/192 (14%)

Query: 363 VGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWT 421
                +L   +     ++K++W  N   +  +   +T   G   ++ ++  +  D G++ 
Sbjct: 16  TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYV 75

Query: 422 CLAENAVGRSHCSCELSV----------------LVPKAYKAPFFTKELEAILTEQG-TV 464
               +       + +LS                  + +  +A       + +  ++G  +
Sbjct: 76  MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKAL 135

Query: 465 SLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVN 514
           +L C V G P P++ W K+ K +   D   L       +            G Y     N
Sbjct: 136 NLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKN 195

Query: 515 CMGAAFSTSRVI 526
             G+  S   V 
Sbjct: 196 KYGSETSDFTVS 207

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  110 bits (277), Expect = 1e-27
 Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 19/171 (11%)

Query: 291 DHPI-FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES----- 344
              I + +R +      +  L I     +D G+Y +   +         +LS ++     
Sbjct: 41  GSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAY 100

Query: 345 ------------QVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEE 392
                       +   A         + ++ G    L   +      ++ W +N++ L +
Sbjct: 101 AEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQ 160

Query: 393 N-KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
                     G   +  ++ VS  DSG++  + +N  G       +SV +P
Sbjct: 161 TDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  107 bits (269), Expect = 1e-26
 Identities = 34/211 (16%), Positives = 65/211 (30%), Gaps = 16/211 (7%)

Query: 448 PFFTKELEAILTEQGTVSLECKV-MGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL- 505
                +L+   T +G + L   V   +   ++ W  +   I+  D         +   L 
Sbjct: 5   ALSATDLKIQSTAEG-IQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTG-EQIWLQ 62

Query: 506 ---------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMP-PGPAPIFIK 555
                    G Y  E  +       T  +  +              + +     A +   
Sbjct: 63  INEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGG 122

Query: 556 EVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYL 615
             + V  + G +  L C V   P P  + W   E  +  +D  ++  +        IN +
Sbjct: 123 LPDVVTIQEGKALNLTCNVWGDPPPE-VSWLKNEKALAQTDHCNLKFEAGRTAYFTINGV 181

Query: 616 EAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
              D G++  V  +  G  + S   V V +P
Sbjct: 182 STADSGKYGLVVKNKYG-SETSDFTVSVFIP 211

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 92.2 bits (229), Expect = 3e-21
 Identities = 35/179 (19%), Positives = 64/179 (35%), Gaps = 21/179 (11%)

Query: 77  DHPI-FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 135
              I + +R +      +  L I     +D G+Y +   +         +LS ++   +A
Sbjct: 41  GSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQA-YDEA 99

Query: 136 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG-----------D 184
            A  +RL   A+    RAR+L  +     I+        +  +    G           +
Sbjct: 100 YAEFQRLKQAAIAEKNRARVLGGLPDVVTIQ----EGKALNLTCNVWGDPPPEVSWLKNE 155

Query: 185 HPIF-GNRFRAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 241
             +   +        GRT    I  V   D G+Y +   N+ G  T+ F +SV   +P+
Sbjct: 156 KALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV--FIPE 212

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 92.2 bits (229), Expect = 3e-21
 Identities = 35/179 (19%), Positives = 64/179 (35%), Gaps = 21/179 (11%)

Query: 184 DHPI-FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 242
              I + +R +      +  L I     +D G+Y +   +         +LS ++   +A
Sbjct: 41  GSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQA-YDEA 99

Query: 243 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG-----------D 291
            A  +RL   A+    RAR+L  +     I+        +  +    G           +
Sbjct: 100 YAEFQRLKQAAIAEKNRARVLGGLPDVVTIQ----EGKALNLTCNVWGDPPPEVSWLKNE 155

Query: 292 HPIF-GNRFRAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 348
             +   +        GRT    I  V   D G+Y +   N+ G  T+ F +SV   +P+
Sbjct: 156 KALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV--FIPE 212

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 76.8 bits (189), Expect = 6e-16
 Identities = 24/187 (12%), Positives = 43/187 (22%), Gaps = 57/187 (30%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
            +   ++ W  +   I+  D         +   L          G Y  E  +       
Sbjct: 29  YVEDLKVNWSHNGSAIRYSDRVKTGVTG-EQIWLQINEPTPNDKGKYVMELFDGKTGHQK 87

Query: 52  TSRVIARGQQSFLDNDDVPFN-------------------------------RAQG---- 76
           T  +  +                                                G    
Sbjct: 88  TVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPP 147

Query: 77  -------DHPIF-GNRFRAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELS 127
                  +  +   +        GRT    I  V   D G+Y +   N+ G  T+ F +S
Sbjct: 148 EVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 207

Query: 128 VESQVPD 134
           V   +P+
Sbjct: 208 V--FIPE 212

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 68.7 bits (168), Expect = 4e-13
 Identities = 25/125 (20%), Positives = 40/125 (32%), Gaps = 22/125 (17%)

Query: 852 EELKAVLSEGGAVNLECKVI-GVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----- 905
            +LK + S    + L   V   V    + W  +G  ++  D  K          L     
Sbjct: 9   TDLK-IQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGV-TGEQIWLQINEP 66

Query: 906 -----GIYTCEAHNCMGTTSSSAALLG---------FEDKSQIEKAEEGKKALIVKDPSL 951
                G Y  E  +       +  L G         F+   Q   AE+ +  ++   P +
Sbjct: 67  TPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDV 126

Query: 952 STIQE 956
            TIQE
Sbjct: 127 VTIQE 131

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  128 bits (324), Expect = 8e-34
 Identities = 46/200 (23%), Positives = 77/200 (38%), Gaps = 22/200 (11%)

Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDN-VKILKETL 802
           T    P+ I   ++    V     F       P P + W ++ ++V  + +   +L++  
Sbjct: 2   TGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG 61

Query: 803 GVCHLKIHALEVA-DQAEWKCIATNDFGQSITSCFLKLNV----PKHYKKPKFLEELK-A 856
           G+  L+I  +    D A ++C+A N  G ++ S    L +          P   +     
Sbjct: 62  GISILRIEPVRAGRDDAPYECVAENGVGDAV-SADATLTIYEGDKTPAGFPVITQGPGTR 120

Query: 857 VLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISG----------EDGTCCLG 906
           V+  G  V + CK IG P P + W K+  ++   +    +            ED     G
Sbjct: 121 VIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQ----G 176

Query: 907 IYTCEAHNCMGTTSSSAALL 926
            Y C A N MGT  S A  L
Sbjct: 177 KYECVAENSMGTEHSKATNL 196

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  118 bits (297), Expect = 3e-30
 Identities = 48/232 (20%), Positives = 84/232 (36%), Gaps = 43/232 (18%)

Query: 438 SVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKA------- 489
           +   P     P   ++ +      G   S  C   G P P ++W K+ KK+         
Sbjct: 2   TGAHP-----PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTV 56

Query: 490 ----GDIFALTANPKDPSS-LGTYTCEAVNCMGAAFSTS---RVIARGQQSFLDNDDVPF 541
               G I  L   P         Y C A N +G A S      +    +           
Sbjct: 57  LEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDK----------- 105

Query: 542 NSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHI 600
                P   P+  +       ++G + ++ C+ +  P P +IYW  K    V+ S+  + 
Sbjct: 106 ----TPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTP-NIYWI-KNQTKVDMSNPRYS 159

Query: 601 MADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKP 652
           + DG     ++I      D G+++CVA +S G +   A  ++V + +   K 
Sbjct: 160 LKDG----FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTKH 207

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  114 bits (287), Expect = 6e-29
 Identities = 46/195 (23%), Positives = 75/195 (38%), Gaps = 17/195 (8%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMADGLGGY 608
            P  I++ +N   ++G  A   C     P P SI W  N + V     +Y ++    G  
Sbjct: 6   PPEIIRKPQNQGVRVGGVASFYCAARGDPPP-SIVWRKNGKKVSGTQSRYTVLEQPGGIS 64

Query: 609 SIEINYLEAVDD-GEWKCVATSSSGVKQFSAAYVHVLM--PKNYRKPRFVESLKAVMTDD 665
            + I  + A  D   ++CVA +  G    + A + +          P   +     + + 
Sbjct: 65  ILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEV 124

Query: 666 GL-VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCVAKN 714
           G  V   CK +G PTP + W K+  ++   +         L          G Y CVA+N
Sbjct: 125 GHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAEN 184

Query: 715 VMGKAESS-TQLTIE 728
            MG   S  T L ++
Sbjct: 185 SMGTEHSKATNLYVK 199

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 98.3 bits (245), Expect = 2e-23
 Identities = 45/221 (20%), Positives = 80/221 (36%), Gaps = 28/221 (12%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 299
            P  IR+  +  V+VG  A      R  P   I  + +    +  +           +R+
Sbjct: 6   PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKN-GKKVSGT----------QSRY 54

Query: 300 RAINRDGR-TELNIRRVRR-DDGGRYSVTASNESGYS-TAKFELSV---ESQVPDAPAFI 353
             + + G  + L I  VR   D   Y   A N  G + +A   L++   +      P   
Sbjct: 55  TVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVIT 114

Query: 354 RRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVS 413
           +      ++VG    +  +        I+W +N  K++ +    +  DG      + +  
Sbjct: 115 QGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQ---IENSR 171

Query: 414 LFDSGRWTCLAENAVGRSHCSC-ELSVLVPKAYKAPFFTKE 453
             D G++ C+AEN++G  H     L V V         TK 
Sbjct: 172 EEDQGKYECVAENSMGTEHSKATNLYVKVR-----RVGTKH 207

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 80.2 bits (198), Expect = 4e-17
 Identities = 46/235 (19%), Positives = 78/235 (33%), Gaps = 41/235 (17%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
            P  IR+  +  V+VG  A      R  P   I  + +    +  +           +R+
Sbjct: 6   PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKN-GKKVSGT----------QSRY 54

Query: 193 RAINRDGR-TELNIRRVRR-DDGGRYSVTASNESGYS-TAKFELSV---ESQVPDAPAFI 246
             + + G  + L I  VR   D   Y   A N  G + +A   L++   +      P   
Sbjct: 55  TVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVIT 114

Query: 247 RRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINR 304
           +      ++VG    +  +   +PT  I    +                +  +  R   +
Sbjct: 115 QGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKN-------------QTKVDMSNPRYSLK 161

Query: 305 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAK-FELSVESQVPDAPAFIRRLHD 358
           DG   L I   R +D G+Y   A N  G   +K   L V  +V       +  H 
Sbjct: 162 DG--FLQIENSREEDQGKYECVAENSMGTEHSKATNLYV--KVR--RVGTKHHHH 210

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 74.4 bits (183), Expect = 4e-15
 Identities = 36/179 (20%), Positives = 61/179 (34%), Gaps = 28/179 (15%)

Query: 82  GNRFRAINRDGR-TELNIRRVRR-DDGGRYSVTASNESGYS-TAKFELSV---ESQVPDA 135
            +R+  + + G  + L I  VR   D   Y   A N  G + +A   L++   +      
Sbjct: 51  QSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGF 110

Query: 136 PAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 193
           P   +      ++VG    +  +   +PT  I    +                +  +  R
Sbjct: 111 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKN-------------QTKVDMSNPR 157

Query: 194 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK-FELSVESQVPDAPAFIRRLHD 251
              +DG   L I   R +D G+Y   A N  G   +K   L V  +V       +  H 
Sbjct: 158 YSLKDG--FLQIENSREEDQGKYECVAENSMGTEHSKATNLYV--KVR--RVGTKHHHH 210

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 71.7 bits (176), Expect = 4e-14
 Identities = 39/185 (21%), Positives = 53/185 (28%), Gaps = 48/185 (25%)

Query: 2   GIPTPQLIWYKDNKKIKA-----------GDIFALTANPKDPSS-LGTYTCEAVNCMGAA 49
           G P P ++W K+ KK+             G I  L   P         Y C A N +G A
Sbjct: 32  GDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDA 91

Query: 50  FSTS--------RVIARGQQSFL---------DNDDVPFN-RAQG-----------DHPI 80
            S               G                  V    +A G              +
Sbjct: 92  VSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKV 151

Query: 81  FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK-FELSVESQVPDAPAFI 139
             +  R   +DG   L I   R +D G+Y   A N  G   +K   L V  +V       
Sbjct: 152 DMSNPRYSLKDG--FLQIENSREEDQGKYECVAENSMGTEHSKATNLYV--KVR--RVGT 205

Query: 140 RRLHD 144
           +  H 
Sbjct: 206 KHHHH 210

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 1   MGIPTPQLIWYKDNKKIKAGDIFALTAN------PKDPSSLGTYTCEAVNCMGAAFSTS 53
           +G PTP + W K+  K+   +      +             G Y C A N MG   S +
Sbjct: 135 IGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKA 193

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  127 bits (321), Expect = 1e-33
 Identities = 54/191 (28%), Positives = 80/191 (41%), Gaps = 21/191 (10%)

Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH 806
           KAP     L++  A V E   F   V   P+P++SW R+   +   D    ++E   +  
Sbjct: 6   KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQL-- 63

Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVN 865
           L I ++E +D   + C A N  G ++ SC   L V     KPK       V + EG    
Sbjct: 64  LTILSVEDSDDGIYCCTANNGVGGAVESCGA-LQV---KMKPKITRPPINVKIIEGLKAV 119

Query: 866 LECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCEAHNC 915
           L C  +G P+P++ W K    L+      ++  E G+  L          G Y C A N 
Sbjct: 120 LPCTTMGNPKPSVSWIKGDSALRENSRIAVL--ESGS--LRIHNVQKEDAGQYRCVAKNS 175

Query: 916 MGTTSSSAALL 926
           +GT  S    L
Sbjct: 176 LGTAYSKLVKL 186

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  124 bits (312), Expect = 2e-32
 Identities = 53/192 (27%), Positives = 76/192 (39%), Gaps = 22/192 (11%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMADGLGGY 608
           AP+    +E V A +   A   C V   P P  I W  NK  +     +Y I  +   G 
Sbjct: 7   APVITTPLETVDALVEEVATFMCAVESYPQP-EISWTRNKILIKLFDTRYSIREN---GQ 62

Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGL- 667
            + I  +E  DDG + C A +  G    S   + V M      P+       V   +GL 
Sbjct: 63  LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMK-----PKITRPPINVKIIEGLK 117

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCVAKNVMG 717
               C  +G P P++ W K +  L+      +  + SL          G Y CVAKN +G
Sbjct: 118 AVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLG 177

Query: 718 KAESST-QLTIE 728
            A S   +L +E
Sbjct: 178 TAYSKLVKLEVE 189

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  119 bits (301), Expect = 4e-31
 Identities = 47/188 (25%), Positives = 73/188 (38%), Gaps = 16/188 (8%)

Query: 345 QVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEE-NKIYRTQHDGN 403
           ++P AP     L  +   V   A  +  + S  + +I W RN   ++  +  Y  + +G 
Sbjct: 3   KLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQ 62

Query: 404 FYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC-ELSVLVPKAYKAPFFTKELEAILTEQG 462
              I   SV   D G + C A N VG +  SC  L V +      P  T+    +   +G
Sbjct: 63  LLTI--LSVEDSDDGIYCCTANNGVGGAVESCGALQVKMK-----PKITRPPINVKIIEG 115

Query: 463 -TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTAN------PKDPSSLGTYTCEAVNC 515
               L C  MG P P + W K +  ++     A+  +             G Y C A N 
Sbjct: 116 LKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNS 175

Query: 516 MGAAFSTS 523
           +G A+S  
Sbjct: 176 LGTAYSKL 183

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  117 bits (294), Expect = 4e-30
 Identities = 45/206 (21%), Positives = 76/206 (36%), Gaps = 35/206 (16%)

Query: 650 RKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDV-YQLTGTSSL-- 705
           + P     L+ V      + +F C V  +P P + W ++   +K  D  Y +     L  
Sbjct: 6   KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLT 65

Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLK 756
                    G YCC A N +G A  S                    L     PK      
Sbjct: 66  ILSVEDSDDGIYCCTANNGVGGAVESCGA-----------------LQVKMKPKITRPPI 108

Query: 757 SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVAD 816
           + +     +         +P+P VSW + D  + E+  + +L+       L+IH ++  D
Sbjct: 109 NVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG----SLRIHNVQKED 164

Query: 817 QAEWKCIATNDFGQSITSCFLKLNVP 842
             +++C+A N  G +  S  +KL V 
Sbjct: 165 AGQYRCVAKNSLG-TAYSKLVKLEVE 189

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  102 bits (257), Expect = 4e-25
 Identities = 43/218 (19%), Positives = 72/218 (33%), Gaps = 42/218 (19%)

Query: 238 QVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD------ 291
           ++P AP     L  +   V   A             C              +        
Sbjct: 3   KLPKAPVITTPLETVDALVEEVATF----------MC------------AVESYPQPEIS 40

Query: 292 -----HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQ 345
                  I     R   R+    L I  V   D G Y  TA+N  G +  +   L V+  
Sbjct: 41  WTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKM- 99

Query: 346 VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFY 405
               P   R   ++ +  G +A L        +  + W + D  L EN        G+  
Sbjct: 100 ---KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLR 156

Query: 406 FIDLSSVSLFDSGRWTCLAENAVGRSHCSC-ELSVLVP 442
              + +V   D+G++ C+A+N++G ++    +L V V 
Sbjct: 157 ---IHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVF 191

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 85.6 bits (212), Expect = 4e-19
 Identities = 45/228 (19%), Positives = 69/228 (30%), Gaps = 56/228 (24%)

Query: 131 QVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD------ 184
           ++P AP     L  +   V   A             C              +        
Sbjct: 3   KLPKAPVITTPLETVDALVEEVATF----------MC------------AVESYPQPEIS 40

Query: 185 -----HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQ 238
                  I     R   R+    L I  V   D G Y  TA+N  G +  +   L V+  
Sbjct: 41  WTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKM- 99

Query: 239 VPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFG 296
               P   R   ++ +  G +A L      +P   +                  D  +  
Sbjct: 100 ---KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKG-------------DSALRE 143

Query: 297 NRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKF-ELSVE 343
           N   A+   G   L I  V+++D G+Y   A N  G + +K  +L VE
Sbjct: 144 NSRIAVLESG--SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 75.1 bits (185), Expect = 1e-15
 Identities = 38/164 (23%), Positives = 58/164 (35%), Gaps = 23/164 (14%)

Query: 77  DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQVPDA 135
              I     R   R+    L I  V   D G Y  TA+N  G +  +   L V+      
Sbjct: 45  KILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKM----K 100

Query: 136 PAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 193
           P   R   ++ +  G +A L      +P   +                  D  +  N   
Sbjct: 101 PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKG-------------DSALRENSRI 147

Query: 194 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKF-ELSVE 236
           A+   G   L I  V+++D G+Y   A N  G + +K  +L VE
Sbjct: 148 AVLESG--SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 63.6 bits (155), Expect = 1e-11
 Identities = 36/159 (22%), Positives = 54/159 (33%), Gaps = 33/159 (20%)

Query: 2   GIPTPQLIWYKDNKKIKAGDI--------FALTANPKDPSSLGTYTCEAVNCMGAAFSTS 53
             P P++ W ++   IK  D           LT    + S  G Y C A N +G A  + 
Sbjct: 33  SYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESC 92

Query: 54  RV--------IARG--QQSFLDNDDVPFN-RAQG-----------DHPIFGNRFRAINRD 91
                     I R       ++           G           D  +  N   A+   
Sbjct: 93  GALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLES 152

Query: 92  GRTELNIRRVRRDDGGRYSVTASNESGYSTAKF-ELSVE 129
           G   L I  V+++D G+Y   A N  G + +K  +L VE
Sbjct: 153 G--SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  125 bits (315), Expect = 5e-33
 Identities = 40/191 (20%), Positives = 71/191 (37%), Gaps = 21/191 (10%)

Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
              F E +   +    E+ +   +VS SP P VSW   +++V    + +          L
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN--L 59

Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK---AVLSEGGAV 864
           +I  +  +D+  ++C    +    I    + + V      P      K   A    G  +
Sbjct: 60  QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV---NVPPAISMPQKSFNATAERGEEM 116

Query: 865 NLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCEAHN 914
              C+  G P+P + WF++G+ ++  +   I+ G +    L          G Y C A N
Sbjct: 117 TFSCRASGSPEPAISWFRNGKLIEENE-KYILKGSNTE--LTVRNIINSDGGPYVCRATN 173

Query: 915 CMGTTSSSAAL 925
             G     A L
Sbjct: 174 KAGEDEKQAFL 184

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  116 bits (291), Expect = 1e-29
 Identities = 40/193 (20%), Positives = 79/193 (40%), Gaps = 23/193 (11%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV---VEASDKYHIMADGLG 606
              F + V   + K G  A + C+V   P P ++ W           + +++ ++A+   
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAP-AVSWL-YHNEEVTTISDNRFAMLANN-- 57

Query: 607 GYSIEINYLEAVDDGEWKCVATSSS-GVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDD 665
             +++I  +   D+G ++C     + G   F    V V +P     P+   +  A     
Sbjct: 58  --NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAE--RG 113

Query: 666 GLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL-----------GSYCCVAKN 714
             ++F C+  G P P + WF++ + ++  + Y L G+++            G Y C A N
Sbjct: 114 EEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATN 173

Query: 715 VMGKAESSTQLTI 727
             G+ E    L +
Sbjct: 174 KAGEDEKQAFLQV 186

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  113 bits (285), Expect = 5e-29
 Identities = 41/205 (20%), Positives = 71/205 (34%), Gaps = 34/205 (16%)

Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDV--YQLTGTSSL--- 705
             F E +       G      C+V   P P + W   NEE+       + +   ++L   
Sbjct: 3   LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQIL 62

Query: 706 -------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFI--EGLK 756
                  G Y C  +           +                ++  N  P     +   
Sbjct: 63  NINKSDEGIYRCEGRVEARGEIDFRDI----------------IVIVNVPPAISMPQKSF 106

Query: 757 SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVAD 816
           +  A   EE  F+ + S SPEP +SWFR+ + + E++   +         L +  +  +D
Sbjct: 107 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN---TELTVRNIINSD 163

Query: 817 QAEWKCIATNDFGQSITSCFLKLNV 841
              + C ATN  G+     FL++ V
Sbjct: 164 GGPYVCRATNKAGEDEKQAFLQVFV 188

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  106 bits (267), Expect = 1e-26
 Identities = 31/197 (15%), Positives = 66/197 (33%), Gaps = 26/197 (13%)

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIR---SPTEIKIHWYRNDRKLEE--NKIYRTQHDGN 403
              F   +     K G  A ++  +    +P    + W  ++ ++    +  +    + N
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPA---VSWLYHNEEVTTISDNRFAMLANNN 58

Query: 404 FYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFT---KELEAILTE 460
                  +++  D G + C             ++ V+V      P  +   K   A    
Sbjct: 59  LQI---LNINKSDEGIYRCEGRVEARGEIDFRDIIVIV---NVPPAISMPQKSFNATAER 112

Query: 461 QGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD-------PSSLGTYTCEAV 513
              ++  C+  G P P + W+++ K I+  + + L  +  +        S  G Y C A 
Sbjct: 113 GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRAT 172

Query: 514 NCMGAAFSTSR--VIAR 528
           N  G     +   V  +
Sbjct: 173 NKAGEDEKQAFLQVFVQ 189

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  104 bits (260), Expect = 1e-25
 Identities = 41/207 (19%), Positives = 75/207 (36%), Gaps = 30/207 (14%)

Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGD--IFALTANPK--- 500
              F + +     +QG    + C+V   P P + W   N+++       FA+ AN     
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI 61

Query: 501 ---DPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEV 557
              + S  G Y CE                   +  +   +VP        PA    ++ 
Sbjct: 62  LNINKSDEGIYRCEGRVEARGEIDF--------RDIIVIVNVP--------PAISMPQKS 105

Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEA 617
            N  A+ G      C+    P P +I W+    ++E ++KY +         + +  +  
Sbjct: 106 FNATAERGEEMTFSCRASGSPEP-AISWFRNGKLIEENEKYILKGS---NTELTVRNIIN 161

Query: 618 VDDGEWKCVATSSSGVKQFSAAYVHVL 644
            D G + C AT+ +G  +   A++ V 
Sbjct: 162 SDGGPYVCRATNKAGEDE-KQAFLQVF 187

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  100 bits (250), Expect = 3e-24
 Identities = 40/202 (19%), Positives = 68/202 (33%), Gaps = 17/202 (8%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 299
              F   +     K G  A ++  +  SP   +   +  N  +           I  NRF
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYH-NEEVT---------TISDNRF 51

Query: 300 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDI 359
             +  +    L I  + + D G Y      E+       ++ V   VP A +  ++  + 
Sbjct: 52  A-MLANN--NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNA 108

Query: 360 AVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGR 419
             + G             E  I W+RN + +EEN+ Y  +       +   ++   D G 
Sbjct: 109 TAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV--RNIINSDGGP 166

Query: 420 WTCLAENAVGRSHCSCELSVLV 441
           + C A N  G       L V V
Sbjct: 167 YVCRATNKAGEDEKQAFLQVFV 188

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 85.2 bits (211), Expect = 5e-19
 Identities = 39/215 (18%), Positives = 66/215 (30%), Gaps = 31/215 (14%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
              F   +     K G  A ++  +  SP   +   +  N  +           I  NRF
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYH-NEEVT---------TISDNRF 51

Query: 193 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDI 252
             +  +    L I  + + D G Y      E+       ++ V   VP A +  ++  + 
Sbjct: 52  A-MLANN--NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNA 108

Query: 253 AVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTEL 310
             + G           SP   I    +                I  N    +       L
Sbjct: 109 TAERGEEMTFSCRASGSPEPAISWFRN-------------GKLIEENEKYILKGSNTE-L 154

Query: 311 NIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
            +R +   DGG Y   A+N++G    +  L V  Q
Sbjct: 155 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 189

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 78.7 bits (194), Expect = 8e-17
 Identities = 28/164 (17%), Positives = 48/164 (29%), Gaps = 16/164 (9%)

Query: 77  DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 136
           +  +               L I  + + D G Y      E+       ++ V   VP A 
Sbjct: 40  NEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAI 99

Query: 137 AFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRA 194
           +  ++  +   + G           SP   I    +                I  N    
Sbjct: 100 SMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRN-------------GKLIEENEKYI 146

Query: 195 INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 238
           +       L +R +   DGG Y   A+N++G    +  L V  Q
Sbjct: 147 LKGSNTE-LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 189

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 72.1 bits (177), Expect = 2e-14
 Identities = 32/163 (19%), Positives = 51/163 (31%), Gaps = 34/163 (20%)

Query: 2   GIPTPQLIWYKDNKKIKAGD--IFALTANPK------DPSSLGTYTCEAVNCMGAAFSTS 53
             P P + W   N+++       FA+ AN        + S  G Y CE            
Sbjct: 28  SSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFR 87

Query: 54  RVIARGQ-------------QSFLDNDDVPFN-RAQG-----------DHPIFGNRFRAI 88
            +I                  +    +++ F+ RA G              I  N    +
Sbjct: 88  DIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL 147

Query: 89  NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 131
                  L +R +   DGG Y   A+N++G    +  L V  Q
Sbjct: 148 KGSNTE-LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 189

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 71.4 bits (175), Expect = 3e-14
 Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 13/90 (14%)

Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL- 905
             F E +      +G    + C+V   P P + W     E+     ++     +    L 
Sbjct: 3   LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN--LQ 60

Query: 906 ---------GIYTCEAHNCMGTTSSSAALL 926
                    GIY CE             ++
Sbjct: 61  ILNINKSDEGIYRCEGRVEARGEIDFRDII 90

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 47.1 bits (112), Expect = 6e-06
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 9/67 (13%)

Query: 1   MGIPTPQLIWYKDNKKIKAGDIFALTANPKD-------PSSLGTYTCEAVNCMGAAFSTS 53
            G P P + W+++ K I+  + + L  +  +        S  G Y C A N  G     +
Sbjct: 123 SGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQA 182

Query: 54  R--VIAR 58
              V  +
Sbjct: 183 FLQVFVQ 189

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  129 bits (326), Expect = 6e-33
 Identities = 49/343 (14%), Positives = 93/343 (27%), Gaps = 55/343 (16%)

Query: 336 AKFELSVESQ---VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEI-------KIHWYR 385
             F L   +            R         G    L                  + W++
Sbjct: 2   DPFTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHK 61

Query: 386 NDRKLEENKIYR---TQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
           ND                DG  +          DSG + C   NA      S EL V   
Sbjct: 62  NDSARTVPGEEETRMWAQDGALWL---LPALQEDSGTYVCTTRNASYCDKMSIELRVFEN 118

Query: 443 KAYKAPFFTKELEAILTEQGTV---SLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANP 499
                PF +      L+  G +    L          ++ WYKD+  +   +   L+   
Sbjct: 119 TDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG 178

Query: 500 KD--------PSSLGTYTCEAVNCMG-AAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPA 550
                         G Y C          ++ +R I            +           
Sbjct: 179 TTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSI---------ELRIKKKKEETI--- 226

Query: 551 PIFIKEVENVKAKIGTSAILECQVLVP---PWPRSIYWYNKEGVVEASD----------- 596
           P+ I  ++ + A +G+   + C+V +    P    ++W   +  +E++            
Sbjct: 227 PVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQ 286

Query: 597 KYHIMADGLGGYSIEINYLEAVDDG-EWKCVATSSSGVKQFSA 638
           +Y    +      +  + +   D   ++KCV  ++   +    
Sbjct: 287 EYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRT 329

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  127 bits (321), Expect = 3e-32
 Identities = 41/303 (13%), Positives = 88/303 (29%), Gaps = 57/303 (18%)

Query: 667 LVSFECKVVGFPTPTLQWFKDNEELKPG---DVYQLTGTSSL----------GSYCCVAK 713
            V +       P   L W K++         +        +L          G+Y C  +
Sbjct: 42  QVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTR 101

Query: 714 NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVS 773
           N     + S +L + +  +                     G+  C          +    
Sbjct: 102 NASYCDKMSIELRVFENTDAFLPFIS----YPQILTLSTSGVLVCP-------DLSEFTR 150

Query: 774 ISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT 833
              + K+ W++D   + + +   +     G  HL +H + + D   ++C+ T        
Sbjct: 151 DKTDVKIQWYKDSLLLDKDNEKFLS--VRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQY 208

Query: 834 SCFLKLNV----PKHYKKPKFLEELKAV-LSEGGAVNLECKVI---GVPQPTLKWFK-DG 884
           +    + +     K    P  +  LK +  S G  + + CKV    G P  T+ W+  + 
Sbjct: 209 NITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTAND 268

Query: 885 RELKAGDIHKIIS-----------GEDGTCCLGI-----------YTCEAHNCMGTTSSS 922
             +++      ++                  L             + C  HN +   +  
Sbjct: 269 THIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLR 328

Query: 923 AAL 925
             +
Sbjct: 329 TTV 331

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  125 bits (316), Expect = 1e-31
 Identities = 55/337 (16%), Positives = 97/337 (28%), Gaps = 47/337 (13%)

Query: 229 AKFELSVESQ---VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFS 285
             F L   +            R         G    L               ++  I  +
Sbjct: 2   DPFTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALR---CPQVPYWLWASVSPRINLT 58

Query: 286 -FRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
             +      + G     +       L +    ++D G Y  T  N S       EL V  
Sbjct: 59  WHKNDSARTVPGEEETRMWAQDGA-LWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFE 117

Query: 345 QVPDAPAFIRRLHDIAVKVGTRARL-----LVEIRSPTEIKIHWYRNDRKLEENKIYRTQ 399
                  FI   +   + + T   L         R  T++KI WY++   L+++      
Sbjct: 118 NTDAFLPFIS--YPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLS 175

Query: 400 HDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC----ELSVLVPKAYKAPFFTKELE 455
             G    + +  V+L D+G + C+   A      +     EL +   K    P     L+
Sbjct: 176 VRGT-THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLK 234

Query: 456 AILTEQG-TVSLECKVM---GIPTPQLIWYKDNKK----------IKAGDIFALTANPKD 501
            I    G  +++ CKV    G P   ++W+  N            +  G     + N ++
Sbjct: 235 TISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNEN 294

Query: 502 P--SSL-----------GTYTCEAVNCMGAAFSTSRV 525
                L             + C   N +      + V
Sbjct: 295 YIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  122 bits (306), Expect = 3e-30
 Identities = 47/336 (13%), Positives = 97/336 (28%), Gaps = 56/336 (16%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVP-------PWPRSIYWY--NKEGVVEASDKYHI 600
                +  +      G    L C  +         P   ++ W+  +    V   ++  +
Sbjct: 18  CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRI-NLTWHKNDSARTVPGEEETRM 76

Query: 601 MADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKA 660
            A      ++ +      D G + C   ++S   + S   + V    +   P        
Sbjct: 77  WAQD---GALWLLPALQEDSGTYVCTTRNASYCDKMSIE-LRVFENTDAFLPFISYPQIL 132

Query: 661 VMTDDGLV---SFECKVVGFPTPTLQWFKDNEELKPGDVY--QLTGTSSL---------- 705
            ++  G++                +QW+KD+  L   +     + GT+ L          
Sbjct: 133 TLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDA 192

Query: 706 GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEE 765
           G Y CV        + +   +I         E ++        P  I  LK+  A++   
Sbjct: 193 GYYRCVLTFAHEGQQYNITRSI---------ELRIKKKKEETIPVIISPLKTISASLGSR 243

Query: 766 FKFTVQVSI---SPEPKVSWFRDDQQVVESD------------NVKILKETLGVCHLKIH 810
                +V +   +P   + W+  +   +ES                   E      L   
Sbjct: 244 LTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFD 303

Query: 811 ALEVADQ-AEWKCIATNDFGQSITSCFLKLNVPKHY 845
            +   D   ++KC+  N          +K     H+
Sbjct: 304 PVTREDLHMDFKCVVHNTLSFQTLRTTVK--EHHHH 337

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  108 bits (271), Expect = 1e-25
 Identities = 45/343 (13%), Positives = 95/343 (27%), Gaps = 40/343 (11%)

Query: 122 AKFELSVESQ---VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFS 178
             F L   +            R         G    L               ++  I  +
Sbjct: 2   DPFTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALR---CPQVPYWLWASVSPRINLT 58

Query: 179 -FRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 237
             +      + G     +       L +    ++D G Y  T  N S       EL V  
Sbjct: 59  WHKNDSARTVPGEEETRMWAQDGA-LWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFE 117

Query: 238 QVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFS-FRAQGDHPIFG 296
                  FI   +   + + T   L+       ++         +    ++      +  
Sbjct: 118 NTDAFLPFIS--YPQILTLSTSGVLVCP-----DLSEFTRDKTDVKIQWYK--DSLLLDK 168

Query: 297 NRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV-----PDAPA 351
           +  + ++  G T L +  V  +D G Y    +            S+E ++        P 
Sbjct: 169 DNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPV 228

Query: 352 FIRRLHDIAVKVGTRARLLVEIRSPT---EIKIHWYRNDRKL-----------EENKIYR 397
            I  L  I+  +G+R  +  ++   T      + W+  +              E  +   
Sbjct: 229 IISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEY 288

Query: 398 TQHDGNFYFIDL--SSVSLFDSGRW-TCLAENAVGRSHCSCEL 437
           ++++ N+  + L    V+  D      C+  N +        +
Sbjct: 289 SENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  105 bits (263), Expect = 1e-24
 Identities = 43/280 (15%), Positives = 85/280 (30%), Gaps = 27/280 (9%)

Query: 76  GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 135
               + G     +       L +    ++D G Y  T  N S       EL V       
Sbjct: 64  SARTVPGEEETRMWAQDGA-LWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAF 122

Query: 136 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFS-FRAQGDHPIFGNRFRA 194
             FI   +   + + T   L+       ++         +    ++      +  +  + 
Sbjct: 123 LPFIS--YPQILTLSTSGVLVCP-----DLSEFTRDKTDVKIQWYK--DSLLLDKDNEKF 173

Query: 195 INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV-----PDAPAFIRRL 249
           ++  G T L +  V  +D G Y    +            S+E ++        P  I  L
Sbjct: 174 LSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPL 233

Query: 250 HDIAVKVGTRARLLVEIR------SPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAIN 303
             I+  +G+R  +  ++         T +   +  N+T   S    G       +  + N
Sbjct: 234 KTISASLGSRLTIPCKVFLGTGTPLTTMLW--WTANDTHIESAYPGGRVTEGPRQEYSEN 291

Query: 304 RDGRTE--LNIRRVRRDD-GGRYSVTASNESGYSTAKFEL 340
            +   E  L    V R+D    +     N   + T +  +
Sbjct: 292 NENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 99.0 bits (246), Expect = 2e-22
 Identities = 25/200 (12%), Positives = 46/200 (23%), Gaps = 19/200 (9%)

Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFT-------VQVSISPEPKVSWFRDDQQVVESDNVK 796
                       K       E            +  S+SP   ++W ++D         +
Sbjct: 14  AARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEE 73

Query: 797 ILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKA 856
             +       L +      D   + C   N       S  L++        P        
Sbjct: 74  T-RMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQIL 132

Query: 857 VLSEGGAV---NLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL-------- 905
            LS  G +   +L           ++W+KD   L   +   +         +        
Sbjct: 133 TLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDA 192

Query: 906 GIYTCEAHNCMGTTSSSAAL 925
           G Y C           +   
Sbjct: 193 GYYRCVLTFAHEGQQYNITR 212

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 92.8 bits (230), Expect = 2e-20
 Identities = 42/284 (14%), Positives = 79/284 (27%), Gaps = 55/284 (19%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
             P   L W+K++               +D  +L          GTY C   N       
Sbjct: 51  VSPRINLTWHKNDSARTVPGEEETRMWAQD-GALWLLPALQEDSGTYVCTTRNASYCDKM 109

Query: 52  TSRV-IARGQQSFLDNDDVPFNRAQG---------------------------DHPIFGN 83
           +  + +     +FL     P                                    +  +
Sbjct: 110 SIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKD 169

Query: 84  RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV-----PDAPAF 138
             + ++  G T L +  V  +D G Y    +            S+E ++        P  
Sbjct: 170 NEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVI 229

Query: 139 IRRLHDIAVKVGTRARLLVEIR------SPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
           I  L  I+  +G+R  +  ++         T +   +  N+T   S    G       + 
Sbjct: 230 ISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLW--WTANDTHIESAYPGGRVTEGPRQE 287

Query: 193 RAINRDGRTE--LNIRRVRRDD-GGRYSVTASNESGYSTAKFEL 233
            + N +   E  L    V R+D    +     N   + T +  +
Sbjct: 288 YSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  126 bits (317), Expect = 1e-32
 Identities = 36/204 (17%), Positives = 63/204 (30%), Gaps = 26/204 (12%)

Query: 748 APKFIEGL----KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLG 803
           AP +        K          +F    + +P P +SW ++ ++      +  +K    
Sbjct: 11  APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 70

Query: 804 VCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK-AVLSEGG 862
              L + ++  +D+  + C+  N FG    +  L +     ++               G 
Sbjct: 71  QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGS 130

Query: 863 AVNLECKVIGVPQPTLKWFK-----------DGRELKAGDIHKIISGEDGTCCL------ 905
            V   CKV    QP ++W K           DG          I    +    L      
Sbjct: 131 DVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVS 190

Query: 906 ----GIYTCEAHNCMGTTSSSAAL 925
               G Y C A N +G    +  L
Sbjct: 191 ERDGGEYLCRATNFIGVAEKAFWL 214

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  115 bits (289), Expect = 6e-29
 Identities = 39/228 (17%), Positives = 73/228 (32%), Gaps = 43/228 (18%)

Query: 651 KPRFVESLKAVMTD-----DGLVSFECKVVGFPTPTLQWFKDNEELKPGD----VYQLTG 701
            P +    +             V F C   G PTP++ W K+  E +       +     
Sbjct: 11  APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 70

Query: 702 TSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKF 751
             SL          G+Y CV +N  G    +  L + +   H             +    
Sbjct: 71  QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPH-------------RPILQ 117

Query: 752 IEGLKSCQATVNEEFKFTVQVSISPEPKVSWFR-----------DDQQVVESDNVKILKE 800
                +  A +  + +F  +V    +P + W +           D    V      I + 
Sbjct: 118 AGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISES 177

Query: 801 TLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKP 848
                 L++  +   D  E+ C ATN  G +  + +L ++ P+  ++ 
Sbjct: 178 VEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEE 225

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  112 bits (281), Expect = 6e-28
 Identities = 44/221 (19%), Positives = 71/221 (32%), Gaps = 36/221 (16%)

Query: 336 AKFELSVESQVPDAPAFIR----RLHDIAVKVGTRARLLVEIR---SPTEIKIHWYRNDR 388
           A  +  V++    AP + R        +AV      R         +P+   I W +N R
Sbjct: 1   ADPDTGVDTG---APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPS---ISWLKNGR 54

Query: 389 KLE-ENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKA 447
           +   E++I   +     + + + SV   D G +TC+ EN  G    +  L VL    ++ 
Sbjct: 55  EFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRP 114

Query: 448 PFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYK-----------DNKKIKAGDIFAL 495
                         G  V   CKV     P + W K           D           +
Sbjct: 115 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWI 174

Query: 496 TANPKDPSSL----------GTYTCEAVNCMGAAFSTSRVI 526
           + + +    L          G Y C A N +G A     + 
Sbjct: 175 SESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLS 215

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  107 bits (268), Expect = 4e-26
 Identities = 45/234 (19%), Positives = 69/234 (29%), Gaps = 47/234 (20%)

Query: 447 APFFTKELEAILTEQ-----GTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD 501
           AP++T+               TV   C   G PTP + W K+ ++ +             
Sbjct: 11  APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 70

Query: 502 PSSL----------GTYTCEAVNCMGAAFSTS--RVIARGQQSFLDNDDVPFNSLMPPGP 549
             SL          G YTC   N  G+   T    V+ R                  P  
Sbjct: 71  QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLER-----------------SPHR 113

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-----------NKEGVVEASDKY 598
             +      N  A +G+     C+V     P  I W                      K 
Sbjct: 114 PILQAGLPANQTAVLGSDVEFHCKVYSDAQPH-IQWLKHVEVNGSKVGPDGTPYVTVLKS 172

Query: 599 HIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKP 652
            I         + +  +   D GE+ C AT+  GV +  A ++ V  P+   + 
Sbjct: 173 WISESVEADVRLRLANVSERDGGEYLCRATNFIGVAE-KAFWLSVHGPRAAEEE 225

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  103 bits (257), Expect = 1e-24
 Identities = 46/259 (17%), Positives = 81/259 (31%), Gaps = 41/259 (15%)

Query: 229 AKFELSVESQVPDAPAFIR----RLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTI 282
           A  +  V++    AP + R        +AV      R       +PT  I    +     
Sbjct: 1   ADPDTGVDTG---APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKN-GREF 56

Query: 283 PFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
               R  G             R  +  L +  V   D G Y+    N+ G     + L V
Sbjct: 57  RGEHRIGGIK----------LRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV 106

Query: 343 ESQVPDAP-AFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRK------------ 389
             + P  P        +    +G+      ++ S  +  I W ++               
Sbjct: 107 LERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPY 166

Query: 390 LEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPF 449
           +   K + ++       + L++VS  D G + C A N +G +  +  LSV  P       
Sbjct: 167 VTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGP-----RA 221

Query: 450 FTKELEAILTEQGTVSLEC 468
             +EL   +      S+  
Sbjct: 222 AEEEL---VEADEAGSVHH 237

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 85.0 bits (210), Expect = 2e-18
 Identities = 31/172 (18%), Positives = 55/172 (31%), Gaps = 3/172 (1%)

Query: 86  RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP-AFIRRLHD 144
               R  +  L +  V   D G Y+    N+ G     + L V  + P  P        +
Sbjct: 64  GIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPAN 123

Query: 145 IAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGN--RFRAINRDGRTE 202
               +G+      ++ S  +   Q+  +  +  S       P       + + + +    
Sbjct: 124 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVR 183

Query: 203 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAV 254
           L +  V   DGG Y   A+N  G +   F LSV          +      +V
Sbjct: 184 LRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEADEAGSV 235

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 75.4 bits (185), Expect = 4e-15
 Identities = 36/195 (18%), Positives = 57/195 (29%), Gaps = 49/195 (25%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
           G PTP + W K+ ++ +               SL          G YTC   N  G+   
Sbjct: 41  GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ 100

Query: 52  TS--RVIARGQ------------QSFLDNDDVPFN-RAQGD------------------- 77
           T    V+ R              Q+ +   DV F+ +   D                   
Sbjct: 101 TYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVG 160

Query: 78  -----HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV 132
                +      + + + +    L +  V   DGG Y   A+N  G +   F LSV    
Sbjct: 161 PDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPR 220

Query: 133 PDAPAFIRRLHDIAV 147
                 +      +V
Sbjct: 221 AAEEELVEADEAGSV 235

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  125 bits (315), Expect = 2e-32
 Identities = 40/209 (19%), Positives = 69/209 (33%), Gaps = 27/209 (12%)

Query: 743 LTNNKAPKFIEGLK----SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKIL 798
             N +AP +    K              KF      +P P + W ++ ++  +   +   
Sbjct: 10  SNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY 69

Query: 799 KETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK-AV 857
           K       L + ++  +D+  + C+  N++G    +  L +     ++          A 
Sbjct: 70  KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANAS 129

Query: 858 LSEGGAVNLECKVIGVPQPTLKWFK-----------DGRELKAGDIHKIISGEDGTCCL- 905
              GG V   CKV    QP ++W K           DG        H  I+       L 
Sbjct: 130 TVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGIN-SSNAEVLA 188

Query: 906 ---------GIYTCEAHNCMGTTSSSAAL 925
                    G Y C+  N +G  + SA L
Sbjct: 189 LFNVTEADAGEYICKVSNYIGQANQSAWL 217

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  115 bits (289), Expect = 6e-29
 Identities = 45/236 (19%), Positives = 78/236 (33%), Gaps = 44/236 (18%)

Query: 647 KNYRKPRFVESLKAVMTD-----DGLVSFECKVVGFPTPTLQWFKDNEELKPGD----VY 697
            N R P +  + K             V F C   G P PT++W K+ +E K         
Sbjct: 11  NNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYK 70

Query: 698 QLTGTSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNK 747
                 SL          G+Y CV +N  G    +  L + +   H             +
Sbjct: 71  VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRH-------------R 117

Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDN------VKILKE- 800
                    +    V  + +F  +V    +P + W +  ++            +K+LK  
Sbjct: 118 PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHS 177

Query: 801 ---TLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEE 853
              +     L +  +  AD  E+ C  +N  GQ+  S +L +   +    P   +E
Sbjct: 178 GINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQ--APGREKE 231

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  112 bits (282), Expect = 4e-28
 Identities = 42/216 (19%), Positives = 72/216 (33%), Gaps = 32/216 (14%)

Query: 340 LSVESQVPDAPAFIRRL----HDIAVKVGTRARLLVEIR---SPTEIKIHWYRNDRKLE- 391
           +S  S    AP +           AV      +          PT   + W +N ++ + 
Sbjct: 6   VSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPT---MRWLKNGKEFKQ 62

Query: 392 ENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFT 451
           E++I   +     + + + SV   D G +TC+ EN  G  + +  L V+    ++     
Sbjct: 63  EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQA 122

Query: 452 KELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAG---DIFALTANPK------- 500
                  T  G  V   CKV     P + W K  +K  +    D        K       
Sbjct: 123 GLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSS 182

Query: 501 DPSSL----------GTYTCEAVNCMGAAFSTSRVI 526
           +   L          G Y C+  N +G A  ++ + 
Sbjct: 183 NAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLT 218

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  106 bits (266), Expect = 5e-26
 Identities = 45/261 (17%), Positives = 76/261 (29%), Gaps = 58/261 (22%)

Query: 423 LAENAVGRSHCSCELSVLVPKAYKAPFFTKELEA-----ILTEQGTVSLECKVMGIPTPQ 477
           +AE+ V  +              +AP++T   +       +    TV   C   G P P 
Sbjct: 1   MAEDFVSEN----------SNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPT 50

Query: 478 LIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTS--RV 525
           + W K+ K+ K               SL          G YTC   N  G+   T    V
Sbjct: 51  MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 110

Query: 526 IARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYW 585
           + R                       +      N    +G      C+V     P  I W
Sbjct: 111 VER-----------------SRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH-IQW 152

Query: 586 Y----------NKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQ 635
                        +G+       H   +      + +  +   D GE+ C  ++  G   
Sbjct: 153 IKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQAN 212

Query: 636 FSAAYVHVLMPKNYRKPRFVE 656
             +A++ VL  +  + P   +
Sbjct: 213 -QSAWLTVLPKQ--QAPGREK 230

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  103 bits (258), Expect = 7e-25
 Identities = 43/239 (17%), Positives = 77/239 (32%), Gaps = 31/239 (12%)

Query: 233 LSVESQVPDAPAFIRRL----HDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSF 286
           +S  S    AP +           AV      +       +P   ++   +         
Sbjct: 6   VSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKN-GKEFKQEH 64

Query: 287 RAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV 346
           R  G             R+    L +  V   D G Y+    NE G     + L V  + 
Sbjct: 65  RIGGYK----------VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERS 114

Query: 347 PDAP-AFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI---------- 395
              P        + +  VG     + ++ S  +  I W ++  K                
Sbjct: 115 RHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVL 174

Query: 396 -YRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKE 453
            +   +  N   + L +V+  D+G + C   N +G+++ S  L+VL  +  +AP   KE
Sbjct: 175 KHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQ--QAPGREKE 231

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 96.1 bits (239), Expect = 2e-22
 Identities = 41/237 (17%), Positives = 67/237 (28%), Gaps = 20/237 (8%)

Query: 126 LSVESQVPDAPAFIRRL----HDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSF 179
           +S  S    AP +           AV      +       +P   ++   +         
Sbjct: 6   VSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKN-GKEFKQEH 64

Query: 180 RAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV 239
           R  G             R+    L +  V   D G Y+    NE G     + L V  + 
Sbjct: 65  RIGGYK----------VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERS 114

Query: 240 PDAP-AFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF-GN 297
              P        + +  VG     + ++ S  +   Q+  +     S       P     
Sbjct: 115 RHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVL 174

Query: 298 RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 354
           +   IN      L +  V   D G Y    SN  G +     L+V  +   AP   +
Sbjct: 175 KHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPK-QQAPGREK 230

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 88.4 bits (219), Expect = 1e-19
 Identities = 32/164 (19%), Positives = 51/164 (31%), Gaps = 3/164 (1%)

Query: 86  RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP-AFIRRLHD 144
               R+    L +  V   D G Y+    NE G     + L V  +    P        +
Sbjct: 68  GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPAN 127

Query: 145 IAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF-GNRFRAINRDGRTEL 203
            +  VG     + ++ S  +   Q+  +     S       P     +   IN      L
Sbjct: 128 ASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVL 187

Query: 204 NIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 247
            +  V   D G Y    SN  G +     L+V  +   AP   +
Sbjct: 188 ALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPK-QQAPGREK 230

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 77.6 bits (191), Expect = 5e-16
 Identities = 37/187 (19%), Positives = 52/187 (27%), Gaps = 49/187 (26%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
           G P P + W K+ K+ K               SL          G YTC   N  G+   
Sbjct: 45  GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 104

Query: 52  TS--RVIARGQ------------QSFLDNDDVPFN-RAQGD------------------- 77
           T    V+ R +             S +   DV F  +   D                   
Sbjct: 105 TYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYG 164

Query: 78  ----HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP 133
                 +   +   IN      L +  V   D G Y    SN  G +     L+V  +  
Sbjct: 165 PDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPK-Q 223

Query: 134 DAPAFIR 140
            AP   +
Sbjct: 224 QAPGREK 230

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  122 bits (307), Expect = 6e-32
 Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 15/186 (8%)

Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETLGVCH 806
             K +        +  +  K    V    EP + W +D   V   D + I + E   +  
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61

Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK-AVLSEGGAVN 865
           L + ++E +D   + C   +     I S  + L V      P F  E K   +       
Sbjct: 62  LSLKSVERSDAGRYWCQVEDGGETEI-SQPVWLTV---EGVPFFTVEPKDLAVPPNAPFQ 117

Query: 866 LECKVIGVPQP-TLKWFKDGRELKAGDIH----KIISGEDGTCCLGIYTCEAHNCMGTTS 920
           L C+ +G P+P T+ W++   ++           +           +++CEAHN  G  S
Sbjct: 118 LSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQS----TMFSCEAHNLKGLAS 173

Query: 921 SSAALL 926
           S  A +
Sbjct: 174 SRTATV 179

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  110 bits (276), Expect = 8e-28
 Identities = 38/183 (20%), Positives = 62/183 (33%), Gaps = 10/183 (5%)

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
               +     + V  G   +L   +    E  I W ++   ++             +   
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61

Query: 409 L--SSVSLFDSGRWTCLAENAVGRS-HCSCELSVLVPKAYKAPFFTKELEAILTEQG-TV 464
           L   SV   D+GR+ C  E+           L+V        PFFT E + +        
Sbjct: 62  LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGV-----PFFTVEPKDLAVPPNAPF 116

Query: 465 SLECKVMGIPTPQLI-WYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTS 523
            L C+ +G P P  I W++   KI          N    +    ++CEA N  G A S +
Sbjct: 117 QLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSRT 176

Query: 524 RVI 526
             +
Sbjct: 177 ATV 179

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  108 bits (271), Expect = 4e-27
 Identities = 36/187 (19%), Positives = 62/187 (33%), Gaps = 14/187 (7%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADG-LGGY 608
               +     +    G    L C V     P  I W     VV+  D+ +I         
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEP-DIQWVKDGAVVQNLDQLYIPVSEQHWIG 60

Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-L 667
            + +  +E  D G + C        +     ++ V        P F    K +       
Sbjct: 61  FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGV-----PFFTVEPKDLAVPPNAP 115

Query: 668 VSFECKVVGFPTP-TLQWFKDNEELKPGD----VYQLTGTSSLGSYCCVAKNVMGKAESS 722
               C+ VG P P T+ W++   ++        V  +TG +    + C A N+ G A S 
Sbjct: 116 FQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSR 175

Query: 723 T-QLTIE 728
           T  + ++
Sbjct: 176 TATVHLQ 182

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  104 bits (262), Expect = 7e-26
 Identities = 34/210 (16%), Positives = 60/210 (28%), Gaps = 43/210 (20%)

Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL 505
                     +   QG  V L C V G+  P + W KD   ++  D   +  + +     
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61

Query: 506 -----------GTYTCEAVNCMGAAFSTS-RVIARGQQSFLDNDDVPFNSLMPPGPAPIF 553
                      G Y C+  +      S    +   G                     P F
Sbjct: 62  LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG--------------------VPFF 101

Query: 554 IKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEIN 613
             E +++         L C+ + PP P +I W+ +           I         + + 
Sbjct: 102 TVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWW-RGTT-------KIGGPAPSPSVLNVT 153

Query: 614 YLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
            +       + C A +  G+     A VH+
Sbjct: 154 GVT--QSTMFSCEAHNLKGLASSRTATVHL 181

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  101 bits (252), Expect = 1e-24
 Identities = 35/207 (16%), Positives = 61/207 (29%), Gaps = 45/207 (21%)

Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGD-----VYQLTGTSSL 705
            + + +   +    G  V   C V G   P +QW KD   ++  D     V +      L
Sbjct: 3   LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFL 62

Query: 706 ----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL 755
                     G Y C  ++      S                   + LT    P F    
Sbjct: 63  SLKSVERSDAGRYWCQVEDGGETEISQP-----------------VWLTVEGVPFFTVEP 105

Query: 756 KSCQATVNEEFKFTVQVSISPEP-KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEV 814
           K      N  F+ + +    PEP  + W+R   ++        +          ++   V
Sbjct: 106 KDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSV----------LNVTGV 155

Query: 815 ADQAEWKCIATNDFGQSITSCFLKLNV 841
                + C A N  G   +S    +++
Sbjct: 156 TQSTMFSCEAHNLKG-LASSRTATVHL 181

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 81.8 bits (202), Expect = 7e-18
 Identities = 33/197 (16%), Positives = 59/197 (29%), Gaps = 27/197 (13%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 299
               +     + V  G   +L   +      +I+   D    +    +            
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKD-GAVVQNLDQ---------LYI 51

Query: 300 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQVPDAPAFIRRLHD 358
               +     L+++ V R D GRY     +      +    L+VE      P F     D
Sbjct: 52  PVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG----VPFFTVEPKD 107

Query: 359 IAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDS 417
           +AV      +L  E    P  + I W+R   K+       +          L+   +  S
Sbjct: 108 LAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSV---------LNVTGVTQS 158

Query: 418 GRWTCLAENAVGRSHCS 434
             ++C A N  G +   
Sbjct: 159 TMFSCEAHNLKGLASSR 175

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 65.2 bits (159), Expect = 3e-12
 Identities = 30/213 (14%), Positives = 57/213 (26%), Gaps = 49/213 (23%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
               +     + V  G   +L   +      +I+   D    +    +            
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKD-GAVVQNLDQ---------LYI 51

Query: 193 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQVPDAPAFIRRLHD 251
               +     L+++ V R D GRY     +      +    L+VE      P F     D
Sbjct: 52  PVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG----VPFFTVEPKD 107

Query: 252 IAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD-HPIF------GNRFRAINR 304
           +AV      +L           C+            A G   P+         +   I  
Sbjct: 108 LAVPPNAPFQL----------SCE------------AVGPPEPVTIVWWRGTTK---IGG 142

Query: 305 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAK 337
              +   +          +S  A N  G ++++
Sbjct: 143 PAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSR 175

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 64.0 bits (156), Expect = 9e-12
 Identities = 25/155 (16%), Positives = 44/155 (28%), Gaps = 37/155 (23%)

Query: 84  RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQVPDAPAFIRRL 142
                 +     L+++ V R D GRY     +      +    L+VE      P F    
Sbjct: 50  YIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG----VPFFTVEP 105

Query: 143 HDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD-HPIF------GNRFRAI 195
            D+AV      +L           C+            A G   P+         +   I
Sbjct: 106 KDLAVPPNAPFQL----------SCE------------AVGPPEPVTIVWWRGTTK---I 140

Query: 196 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK 230
                +   +          +S  A N  G ++++
Sbjct: 141 GGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSR 175

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 60.6 bits (147), Expect = 1e-10
 Identities = 21/151 (13%), Positives = 41/151 (27%), Gaps = 32/151 (21%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL-----------GTYTCEAVNCMGAAF 50
           G+  P + W KD   ++  D   +  + +                G Y C+  +      
Sbjct: 28  GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEI 87

Query: 51  STS-RVIARGQQSFLD---------NDDVPFN-RAQGD-HPIF------GNRFRAINRDG 92
           S    +   G   F           N     +  A G   P+         +   I    
Sbjct: 88  SQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTK---IGGPA 144

Query: 93  RTELNIRRVRRDDGGRYSVTASNESGYSTAK 123
            +   +          +S  A N  G ++++
Sbjct: 145 PSPSVLNVTGVTQSTMFSCEAHNLKGLASSR 175

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 2   GIPTPQLI-WYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 56
           G P P  I W++   KI          N    +    ++CEA N  G A S +  +
Sbjct: 124 GPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATV 179

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  121 bits (304), Expect = 2e-31
 Identities = 32/193 (16%), Positives = 67/193 (34%), Gaps = 20/193 (10%)

Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISP-EPKVSWFRDDQQVVESDN--VKILKETLG 803
           +  +        + +V E   F  QV+    +  +SWF  + + +  +   + ++     
Sbjct: 1   RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60

Query: 804 VCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK-AVLSEGG 862
              L I+   + D   +KC+ T + G + +   + + +   ++K  F          EG 
Sbjct: 61  SSTLTIYNANIDDAGIYKCVVTAEDG-TQSEATVNVKI---FQKLMFKNAPTPQEFKEGE 116

Query: 863 AVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCEA 912
              + C V+    PT+ W   GR++      + I   +    L          G Y CE 
Sbjct: 117 DAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY--LQIRGIKKTDEGTYRCEG 174

Query: 913 HNCMGTTSSSAAL 925
                   +   +
Sbjct: 175 RILARGEINFKDI 187

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  114 bits (287), Expect = 3e-29
 Identities = 31/193 (16%), Positives = 61/193 (31%), Gaps = 20/193 (10%)

Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY--NKEGVVEASDKYHIMADGLGGY 608
                     +  +G S    CQV      + I W+  N E +     +  ++ +     
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGL- 667
           ++ I      D G +KCV T+  G +  +   V +          F  +       +G  
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK-----LMFKNAPTPQEFKEGED 117

Query: 668 VSFECKVVGFPTPTLQWFKDNEEL--KPGDVYQLTGTSSL----------GSYCCVAKNV 715
               C VV    PT+ W     ++  K    + +   + L          G+Y C  + +
Sbjct: 118 AVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRIL 177

Query: 716 MGKAESSTQLTIE 728
                +   + + 
Sbjct: 178 ARGEINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  105 bits (263), Expect = 5e-26
 Identities = 35/210 (16%), Positives = 64/210 (30%), Gaps = 37/210 (17%)

Query: 650 RKPRFVESLKAVMTDDG-LVSFECKVVGFP-TPTLQWFKDN-EELKPGD-----VYQLTG 701
           R  +            G    F C+V G      + WF  N E+L P       V+    
Sbjct: 1   RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60

Query: 702 TSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKF 751
           +S+L          G Y CV     G    +T                 + +   +   F
Sbjct: 61  SSTLTIYNANIDDAGIYKCVVTAEDGTQSEAT-----------------VNVKIFQKLMF 103

Query: 752 IEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHA 811
                  +    E+      V  S  P + W    + V+   +V+ +  +     L+I  
Sbjct: 104 KNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY--LQIRG 161

Query: 812 LEVADQAEWKCIATNDFGQSITSCFLKLNV 841
           ++  D+  ++C         I    +++ V
Sbjct: 162 IKKTDEGTYRCEGRILARGEINFKDIQVIV 191

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  104 bits (260), Expect = 1e-25
 Identities = 28/194 (14%), Positives = 62/194 (31%), Gaps = 27/194 (13%)

Query: 350 PAFIRRLHDIAVKVGTRARLLVE-IRSPTEIKIHWYRNDRKL---EENKIYRTQHDGNFY 405
                      + VG     L +      +  I W+  + +     + +I    +D +  
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 406 FIDLSSVSLFDSGRWTCLAENAVG-RSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-T 463
            + + + ++ D+G + C+     G +S  +  + +          F         ++G  
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK-----LMFKNAPTPQEFKEGED 117

Query: 464 VSLECKVMGIPTPQLIWYKDNKKI--KAGDIFALTANPKDPSSL----------GTYTCE 511
             + C V+    P +IW    + +  K    F + +N    + L          GTY CE
Sbjct: 118 AVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN----NYLQIRGIKKTDEGTYRCE 173

Query: 512 AVNCMGAAFSTSRV 525
                    +   +
Sbjct: 174 GRILARGEINFKDI 187

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 89.1 bits (221), Expect = 2e-20
 Identities = 36/205 (17%), Positives = 57/205 (27%), Gaps = 22/205 (10%)

Query: 243 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFS--FRAQGDHPIFGNRFR 300
                      + VG                CQ   +        F   G   +  N+ R
Sbjct: 3   LQVDIVPSQGEISVGESKFF----------LCQVAGDAKDKDISWFSPNG-EKLSPNQQR 51

Query: 301 ---AINRDGRTELNIRRVRRDDGGRYSVTASNESGY-STAKFELSVESQVPDAPAFIRRL 356
                N D  + L I     DD G Y    + E G  S A   + +         F    
Sbjct: 52  ISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ----KLMFKNAP 107

Query: 357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFD 416
                K G  A ++ ++ S     I W    R +   K  R     N  ++ +  +   D
Sbjct: 108 TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTD 166

Query: 417 SGRWTCLAENAVGRSHCSCELSVLV 441
            G + C             ++ V+V
Sbjct: 167 EGTYRCEGRILARGEINFKDIQVIV 191

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 88.7 bits (220), Expect = 4e-20
 Identities = 32/217 (14%), Positives = 69/217 (31%), Gaps = 45/217 (20%)

Query: 446 KAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLI-WYKDNKKI--KAGDIFALTANPKD 501
           +               G +    C+V G    + I W+  N +         ++  N  D
Sbjct: 1   RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60

Query: 502 PSSL----------GTYTCEAVNCMGAAFS-TSRVIARGQQSFLDNDDVPFNSLMPPGPA 550
            S+L          G Y C      G     T  V                         
Sbjct: 61  SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF--------------------QK 100

Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG---VVEASDKYHIMADGLGG 607
            +F       + K G  A++ C V+    P +I W   +G   +++   ++ ++++    
Sbjct: 101 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPP-TIIWK-HKGRDVILKKDVRFIVLSNN--- 155

Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL 644
             ++I  ++  D+G ++C     +   + +   + V+
Sbjct: 156 -YLQIRGIKKTDEGTYRCEGRILAR-GEINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 71.4 bits (175), Expect = 3e-14
 Identities = 31/165 (18%), Positives = 48/165 (29%), Gaps = 23/165 (13%)

Query: 78  HPIFGNRFR---AINRDGRTELNIRRVRRDDGGRYSVTASNESGY-STAKFELSVESQVP 133
             +  N+ R     N D  + L I     DD G Y    + E G  S A   + +     
Sbjct: 43  EKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ--- 99

Query: 134 DAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNR 191
               F         K G  A ++ ++  S    I  +              G   I    
Sbjct: 100 -KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHK------------GRDVILKKD 146

Query: 192 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
            R I       L IR +++ D G Y       +       ++ V 
Sbjct: 147 VRFIVLSNNY-LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 61.4 bits (149), Expect = 8e-11
 Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 20/120 (16%)

Query: 846 KKPKFLEELKAV-LSEGGAVNLECKVIGVPQ-PTLKWFK-DGRELKAGD-IHKIISGEDG 901
           +  +         +S G +    C+V G  +   + WF  +G +L        ++  +D 
Sbjct: 1   RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60

Query: 902 TCCL----------GIYTCEAHNCMGTTSSSAALL------GFEDKSQIEKAEEGKKALI 945
           +  L          GIY C      GT S +   +       F++    ++ +EG+ A+I
Sbjct: 61  SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 22/161 (13%), Positives = 41/161 (25%), Gaps = 36/161 (22%)

Query: 4   PTPQLIWYKDNKKI--KAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
               + W+  N +         ++  N  D S+L          G Y C      G    
Sbjct: 31  KDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE 90

Query: 52  TS---RVIAR-------GQQSFLDNDDVPFN-RAQGD-----------HPI-FGNRFRAI 88
            +   ++  +         Q F + +D                       +      R I
Sbjct: 91  ATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI 150

Query: 89  NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
                  L IR +++ D G Y       +       ++ V 
Sbjct: 151 VLSNNY-LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  121 bits (304), Expect = 4e-31
 Identities = 35/197 (17%), Positives = 64/197 (32%), Gaps = 32/197 (16%)

Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH 806
           +  K     +S      +  K   + +  P  +  WF+ ++++   +             
Sbjct: 17  RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNT----------SE 66

Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV------------PKHYKKPKFLEEL 854
           L  +A+ V D   + C   N+F     S + +L+V                 K +   E 
Sbjct: 67  LIFNAVHVKDAGFYVCRVNNNFT-FEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEP 125

Query: 855 K-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKI----ISGEDGTCCLGIYT 909
               L  G  + L+C  +G P P  +WFK+   L            +  E      G Y 
Sbjct: 126 TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQ----GTYW 181

Query: 910 CEAHNCMGTTSSSAALL 926
           C  +N   +  S    +
Sbjct: 182 CHVYNDRDSQDSKKVEI 198

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  118 bits (298), Expect = 3e-30
 Identities = 40/231 (17%), Positives = 70/231 (30%), Gaps = 25/231 (10%)

Query: 632 GVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEE 690
           G       +   L+P   R  +   + ++     G  V   C+  G P    QWFK N+E
Sbjct: 2   GSSHHHHHHSSGLVP---RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKE 58

Query: 691 LKPGDVYQLT----GTSSLGSYCCVAKNVMGKAESST-QLTIEDIRNHLSEEDKLLLLTN 745
           +  G+  +L          G Y C   N      S   QL + DI              +
Sbjct: 59  IPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVD---GVS 115

Query: 746 NKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVC 805
               +      S +               SP P   WF+++  +                
Sbjct: 116 ESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL--------- 166

Query: 806 HLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV--PKHYKKPKFLEEL 854
              +  +++  Q  + C   ND   S  S  +++ +    +   P   E+ 
Sbjct: 167 -YMVPYVDLEHQGTYWCHVYNDRD-SQDSKKVEIIIDELNNLGHPDNKEQT 215

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  111 bits (278), Expect = 1e-27
 Identities = 46/234 (19%), Positives = 72/234 (30%), Gaps = 26/234 (11%)

Query: 428 VGRSHC-SCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNK 485
           +G SH      S LVP+       T   E+     G  V L C+  G P  Q  W+K NK
Sbjct: 1   MGSSHHHHHHSSGLVPRG---SKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNK 57

Query: 486 KIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTS---RVIARGQQSFLDNDDVPFN 542
           +I  G+   L  N       G Y C   N     FS      V           +    +
Sbjct: 58  EIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIP-------ESFQRS 110

Query: 543 SLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMA 602
                        E  + K   G++ +L+C  +  P P    W+ K  +    +      
Sbjct: 111 VDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIP-HYQWF-KNELPLTHE------ 162

Query: 603 DGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVE 656
                    + Y++    G + C   +    +      + +    N   P   E
Sbjct: 163 ---TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKE 213

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  109 bits (275), Expect = 3e-27
 Identities = 34/205 (16%), Positives = 60/205 (29%), Gaps = 21/205 (10%)

Query: 334 STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN 393
           S+          VP            AV  G   +L         ++  W++ ++++   
Sbjct: 3   SSHHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPN- 61

Query: 394 KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC-ELSVLVP---------- 442
                 +     F   ++V + D+G + C   N          +L V             
Sbjct: 62  -----GNTSELIF---NAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDG 113

Query: 443 KAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD 501
            +        E  +     G T+ L+C  +G P P   W+K+   +             D
Sbjct: 114 VSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVD 173

Query: 502 PSSLGTYTCEAVNCMGAAFSTSRVI 526
               GTY C   N   +  S    I
Sbjct: 174 LEHQGTYWCHVYNDRDSQDSKKVEI 198

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 88.8 bits (220), Expect = 6e-20
 Identities = 34/248 (13%), Positives = 54/248 (21%), Gaps = 53/248 (21%)

Query: 227 STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSF 286
           S+          VP            AV  G   +L           C            
Sbjct: 3   SSHHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLC----------C------------ 40

Query: 287 RAQGD-HPIF-----GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFE 339
           RA G     +           I     +EL    V   D G Y    +N   +  +   +
Sbjct: 41  RATGHPFVQYQWFKMNKE---IPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQ 97

Query: 340 LSV-----------ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDR 388
           L V           +                 +  G+   L             W++N+ 
Sbjct: 98  LDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNEL 157

Query: 389 KLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSH-CSCELSVLVPKAYKA 447
            L              Y +    V L   G + C   N          E+ +        
Sbjct: 158 PLTHE-------TKKLYMV--PYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGH 208

Query: 448 PFFTKELE 455
           P   ++  
Sbjct: 209 PDNKEQTT 216

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 71.1 bits (174), Expect = 7e-14
 Identities = 35/259 (13%), Positives = 56/259 (21%), Gaps = 77/259 (29%)

Query: 120 STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSF 179
           S+          VP            AV  G   +L           C            
Sbjct: 3   SSHHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLC----------C------------ 40

Query: 180 RAQGD-HPIF-----GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFE 232
           RA G     +           I     +EL    V   D G Y    +N   +  +   +
Sbjct: 41  RATGHPFVQYQWFKMNKE---IPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQ 97

Query: 233 LSV-----------ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNT 281
           L V           +                 +  G+   L          +C       
Sbjct: 98  LDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVL----------QCV------ 141

Query: 282 IPFSFRAQGDHPI------FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYST 335
                 A G  PI             +  + +    +  V  +  G Y     N+     
Sbjct: 142 ------AVG-SPIPHYQWFKNEL--PLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQD 192

Query: 336 AKFELSVESQVPDAPAFIR 354
           +K    VE  + +      
Sbjct: 193 SK---KVEIIIDELNNLGH 208

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 67.2 bits (164), Expect = 1e-12
 Identities = 25/168 (14%), Positives = 42/168 (25%), Gaps = 32/168 (19%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTS-------- 53
           G P  Q  W+K NK+I  G+   L  N       G Y C   N     FS          
Sbjct: 44  GHPFVQYQWFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDI 103

Query: 54  RVIARGQQSFLDNDDVPFNRAQGDHPI-FGNRFR--------------------AINRDG 92
               +     +    +          +  G+                        +  + 
Sbjct: 104 PESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET 163

Query: 93  RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 140
           +    +  V  +  G Y     N+     +K    VE  + +      
Sbjct: 164 KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSK---KVEIIIDELNNLGH 208

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 24/180 (13%), Positives = 43/180 (23%), Gaps = 46/180 (25%)

Query: 86  RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSV-----------ESQVP 133
           + I     +EL    V   D G Y    +N   +  +   +L V           +    
Sbjct: 57  KEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSE 116

Query: 134 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPI------ 187
                        +  G+   L          +C             A G  PI      
Sbjct: 117 SKLQICVEPTSQKLMPGSTLVL----------QCV------------AVG-SPIPHYQWF 153

Query: 188 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 247
                  +  + +    +  V  +  G Y     N+     +K    VE  + +      
Sbjct: 154 KNEL--PLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSK---KVEIIIDELNNLGH 208

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  123 bits (309), Expect = 5e-31
 Identities = 43/266 (16%), Positives = 78/266 (29%), Gaps = 30/266 (11%)

Query: 283 PFSFRAQGDHPIF-----GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK 337
             + R  G+  +         +   +    + L+       + G Y  T   +    +A 
Sbjct: 21  TVTLRCVGNGSVEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAA 80

Query: 338 FELSVESQVPDAPAFIRRLHDIAVKVGTRARL--LVEIRSPTEIKIHWYRND-RKLEENK 394
             L V  + P  P +     ++ V     A L  L+      E  +   R   R L  + 
Sbjct: 81  IHLYV--KDPARP-WNVLAQEVVVFEDQDALLPCLLTDPVL-EAGVSLVRVRGRPLMRHT 136

Query: 395 IYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKA-PFFTKE 453
            Y       F    +       S  + C A    GR   S  + + V K     P  T  
Sbjct: 137 NYSFSPWHGFT---IHRAKFIQSQDYQCSALMG-GRKVMSISIRLKVQKVIPGPPALTLV 192

Query: 454 LEAILTEQG-TVSLECKVMGIPTPQLIWYK-DNKKIKAGDIFALTANPKDP-SSL----- 505
              ++  +G    + C    +     ++ + +N K+          N      +L     
Sbjct: 193 PAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQV 252

Query: 506 -----GTYTCEAVNCMGAAFSTSRVI 526
                G Y+C A N  G   ++    
Sbjct: 253 DFQHAGNYSCVASNVQGKHSTSMFFR 278

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  122 bits (308), Expect = 6e-31
 Identities = 40/279 (14%), Positives = 81/279 (29%), Gaps = 29/279 (10%)

Query: 176 PFSFRAQGDHPIF-----GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK 230
             + R  G+  +         +   +    + L+       + G Y  T   +    +A 
Sbjct: 21  TVTLRCVGNGSVEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAA 80

Query: 231 FELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQ---FDLNNTIPFSFR 287
             L V  + P  P +     ++ V                 + C      L   +    R
Sbjct: 81  IHLYV--KDPARP-WNVLAQEVVVFED----------QDALLPCLLTDPVLEAGV-SLVR 126

Query: 288 AQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG-YSTAKFELSVESQV 346
            +G   +    +      G     I R +      Y  +A        +    L V+  +
Sbjct: 127 VRGRPLMRHTNYSFSPWHG---FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVI 183

Query: 347 PDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFY 405
           P  PA      ++    G  A+++           +    N+ KL   +     ++    
Sbjct: 184 PGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQK 243

Query: 406 FIDL--SSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
            + L    V    +G ++C+A N  G+   S    V+  
Sbjct: 244 VLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVES 282

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  115 bits (288), Expect = 3e-28
 Identities = 45/312 (14%), Positives = 80/312 (25%), Gaps = 54/312 (17%)

Query: 448 PFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKK----IKAGDIFALTANPKDP 502
           P     +  ++ + G TV+L C   G     + W             G    L+ N    
Sbjct: 5   PVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPPSPHWTLYSDGSSSILSTNNATF 60

Query: 503 SSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKA 562
            + GTY C          +   +             V         PA  +    + V  
Sbjct: 61  QNTGTYRCTEPGDPLGGSAAIHLY------------VK-------DPARPWNVLAQEVVV 101

Query: 563 KIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGGYSIEINYLEAVDDG 621
                A+L C +  P     +      G  +     Y             I+  + +   
Sbjct: 102 FEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWH----GFTIHRAKFIQSQ 157

Query: 622 EWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPTP 680
           +++C A          +  + V        P        ++   G      C        
Sbjct: 158 DYQCSALMGGRKVMSISIRLKVQKVIPG-PPALTLVPAELVRIRGEAAQIVCSASSVDVN 216

Query: 681 TLQWFKDNEELKPGD------VYQLTGTSSL----------GSYCCVAKNVMGKAESSTQ 724
              + + N               +     +L          G+Y CVA NV GK  +S  
Sbjct: 217 FDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMF 276

Query: 725 LTIED---IRNH 733
             + +     +H
Sbjct: 277 FRVVESAGNSHH 288

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  112 bits (282), Expect = 2e-27
 Identities = 43/278 (15%), Positives = 79/278 (28%), Gaps = 42/278 (15%)

Query: 86  RAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 144
             +  DG +  L+       + G Y  T   +    +A   L V  + P  P +     +
Sbjct: 42  WTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYV--KDPARP-WNVLAQE 98

Query: 145 IAVKVGTRARLLVEIRSPTEIKCQ---FDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRT 201
           + V                 + C      L   +    R +G   +    +      G  
Sbjct: 99  VVVFED----------QDALLPCLLTDPVLEAGV-SLVRVRGRPLMRHTNYSFSPWHG-- 145

Query: 202 ELNIRRVRRDDGGRYSVTASNESG-YSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRA 260
              I R +      Y  +A        +    L V+  +P  PA      ++    G  A
Sbjct: 146 -FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAA 204

Query: 261 RLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE----LNIRRVR 316
           +++               +  + F    Q ++       ++   + R +    LN+ +V 
Sbjct: 205 QIVCSAS-----------SVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVD 253

Query: 317 RDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 354
               G YS  ASN  G  +      V        A   
Sbjct: 254 FQHAGNYSCVASNVQGKHSTSMFFRVV-----ESAGNS 286

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  111 bits (278), Expect = 6e-27
 Identities = 44/301 (14%), Positives = 82/301 (27%), Gaps = 53/301 (17%)

Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL---- 705
            P    S+  ++   G  V+  C   G    +++W           +Y    +S L    
Sbjct: 4   IPVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPP--SPHWTLYSDGSSSILSTNN 57

Query: 706 ------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQ 759
                 G+Y C          ++  L ++D                  A  +    +   
Sbjct: 58  ATFQNTGTYRCTEPGDPLGGSAAIHLYVKD-----------------PARPWNVLAQEVV 100

Query: 760 ATVNEEFKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQA 818
              +++      ++    E  VS  R   + +            G     IH  +     
Sbjct: 101 VFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG---FTIHRAKFIQSQ 157

Query: 819 EWKCIATNDFGQSITSCFLKLNV-PKHYKKPKFLEELK-AVLSEGGAVNLECKVIGVPQP 876
           +++C A    G+ + S  ++L V       P         V   G A  + C    V   
Sbjct: 158 DYQCSALMG-GRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVN 216

Query: 877 T-LKWFKDGRELKAGDIHKIISGEDGTCCL-----------GIYTCEAHNCMGTTSSSAA 924
             +    +  +L         +                   G Y+C A N  G  S+S  
Sbjct: 217 FDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMF 276

Query: 925 L 925
            
Sbjct: 277 F 277

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  103 bits (257), Expect = 4e-24
 Identities = 42/303 (13%), Positives = 83/303 (27%), Gaps = 44/303 (14%)

Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSI 610
           P+    V  +  K G +  L C         S+ W         S  + + +DG     +
Sbjct: 5   PVIEPSVPELVVKPGATVTLRCVG-----NGSVEWDGPP-----SPHWTLYSDGSSS-IL 53

Query: 611 EINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSF 670
             N     + G ++C           +A +++V  P    +P  V + + V+ +D     
Sbjct: 54  STNNATFQNTGTYRCTEPGDPLGGS-AAIHLYVKDP---ARPWNVLAQEVVVFEDQDALL 109

Query: 671 ECKVVG-FPTPTLQWFK-DNEELKPGDVYQLTGTSSL----------GSYCCVAKNVMGK 718
            C +        +   +     L     Y  +                 Y C A     K
Sbjct: 110 PCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRK 169

Query: 719 AESST-QLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPE 777
             S + +L ++                    P              E  +     S    
Sbjct: 170 VMSISIRLKVQK--------------VIPGPPALTLVPAELVRIRGEAAQIVCSASSVDV 215

Query: 778 PK-VSWFRDDQQVVESDNVKILKETLGVCH-LKIHALEVADQAEWKCIATNDFGQSITSC 835
              V    ++ ++                  L +  ++      + C+A+N  G+  TS 
Sbjct: 216 NFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSM 275

Query: 836 FLK 838
           F +
Sbjct: 276 FFR 278

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 85.0 bits (210), Expect = 4e-18
 Identities = 34/242 (14%), Positives = 64/242 (26%), Gaps = 49/242 (20%)

Query: 36  GTYTCEAVNCMGAAFSTSRVIAR----------GQQSFLDNDDVPFN------------- 72
           GTY C          +   +  +           +    ++ D                 
Sbjct: 64  GTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVS 123

Query: 73  --RAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG-YSTAKFELSVE 129
             R +G   +    +      G     I R +      Y  +A        +    L V+
Sbjct: 124 LVRVRGRPLMRHTNYSFSPWHG---FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQ 180

Query: 130 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFG 189
             +P  PA      ++    G  A+++               +  + F    Q ++    
Sbjct: 181 KVIPGPPALTLVPAELVRIRGEAAQIVCSAS-----------SVDVNFDVFLQHNNTKLA 229

Query: 190 NRFRAINRDGRTE----LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAF 245
              ++   + R +    LN+ +V     G YS  ASN  G  +      V        A 
Sbjct: 230 IPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVV-----ESAG 284

Query: 246 IR 247
             
Sbjct: 285 NS 286

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 63.8 bits (155), Expect = 6e-11
 Identities = 21/191 (10%), Positives = 38/191 (19%), Gaps = 31/191 (16%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLK 808
           P     +                        V W           +            L 
Sbjct: 5   PVIEPSVPELVVKPGATVTLRCVG----NGSVEWDGPPSPHWTLYSDG------SSSILS 54

Query: 809 IHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVNLE 867
            +     +   ++C    D      +  L +  P       +    + V + E     L 
Sbjct: 55  TNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPA----RPWNVLAQEVVVFEDQDALLP 110

Query: 868 CKVIG-VPQPTLKWFK-DGRELKAGDIHKIISG----------EDGTCCLGIYTCEAHNC 915
           C +   V +  +   +  GR L     +                        Y C A   
Sbjct: 111 CLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQS----QDYQCSALMG 166

Query: 916 MGTTSSSAALL 926
                S +  L
Sbjct: 167 GRKVMSISIRL 177

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 51.9 bits (124), Expect = 4e-07
 Identities = 24/176 (13%), Positives = 47/176 (26%), Gaps = 42/176 (23%)

Query: 2   GIPTPQLIWYK-DNKKIKAGDIFALTAN------PKDPSSLGTYTCEAVNCMGAAFS--- 51
            +    +   +   + +     ++ +                 Y C A+       S   
Sbjct: 116 PVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISI 175

Query: 52  ------------------TSRVIARGQQSFLD----NDDVPFN-RAQGDHPIFGNRFRAI 88
                                V  RG+ + +     + DV F+   Q ++       ++ 
Sbjct: 176 RLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSD 235

Query: 89  NRDGRTE----LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 140
             + R +    LN+ +V     G YS  ASN  G  +      V        A   
Sbjct: 236 FHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVV-----ESAGNS 286

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  123 bits (309), Expect = 7e-31
 Identities = 38/277 (13%), Positives = 73/277 (26%), Gaps = 42/277 (15%)

Query: 286 FRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
           ++     P+   +   I++     L     + +D G Y     N S     K        
Sbjct: 41  YKDDSKTPVSTEQASRIHQHKEK-LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVEN 99

Query: 346 VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIK------IHWYRNDRKLEENKIYRTQ 399
            P+     + +    + V     L+       + +      + WY++ + L  + I+ + 
Sbjct: 100 EPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG 159

Query: 400 HDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC----ELSVLVPKAYKAPFFTKELE 455
                      +V+    G +TC A               E   L       P       
Sbjct: 160 VKDRLIV---MNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPAN 216

Query: 456 AILT-EQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALT----------------- 496
             +  + G  + L C V G  +    W  +   I   D                      
Sbjct: 217 ETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLI 276

Query: 497 -------ANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
                     +       +TC A N  G   +  ++I
Sbjct: 277 TVLNISEIESRFYK--HPFTCFAKNTHGIDAAYIQLI 311

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  117 bits (293), Expect = 9e-29
 Identities = 39/301 (12%), Positives = 77/301 (25%), Gaps = 54/301 (17%)

Query: 668 VSFECKVVGFPTP-TLQWFKDNEELKPG---DVYQLTGTSSL----------GSYCCVAK 713
               C +       T+ W+KD+ +                 L          G Y CV +
Sbjct: 23  DVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVR 82

Query: 714 NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVS 773
           N              +   +L    + +     K P   +G   C            +  
Sbjct: 83  NSSYCLRIKISAKFVENEPNLCYNAQAI--FKQKLPVAGDGGLVCPYM------EFFKNE 134

Query: 774 ISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT 833
            +  PK+ W++D + ++  +      +      L +  +    +  + C A+  +     
Sbjct: 135 NNELPKLQWYKDCKPLLLDNIHFSGVKD----RLIVMNVAEKHRGNYTCHASYTYLGKQY 190

Query: 834 SCFLKLNV----PKHYKKPKFLEELKAVLS--EGGAVNLECKVIGVPQPTLKWFKDGREL 887
                +           +P  +      +    G  + L C V G       W  +G  +
Sbjct: 191 PITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVI 250

Query: 888 KAGDIHKI-----------ISGEDGTCCL-----------GIYTCEAHNCMGTTSSSAAL 925
              D                        L             +TC A N  G  ++   L
Sbjct: 251 DEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 310

Query: 926 L 926
           +
Sbjct: 311 I 311

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  114 bits (285), Expect = 1e-27
 Identities = 51/292 (17%), Positives = 86/292 (29%), Gaps = 43/292 (14%)

Query: 375 SPTEIKIHWYRNDRKLEENKIYR---TQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS 431
           +  +  I WY++D K   +        QH    +F       + DSG + C+  N+    
Sbjct: 32  NEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWF---VPAKVEDSGHYYCVVRNSSYCL 88

Query: 432 HCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVM------GIPTPQLIWYKDNK 485
                   +  +           +  L   G   L C  M          P+L WYKD K
Sbjct: 89  RIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCK 148

Query: 486 KIKAGDIFALTANPK------DPSSLGTYTCEAVNCMG-AAFSTSRVIARGQQSFLDNDD 538
            +   +I       +           G YTC A        +  +RVI        +   
Sbjct: 149 PLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVI--------EFIT 200

Query: 539 VPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASD-- 596
           +  N    P    I     E ++  +G+   L C V         YW     V++  D  
Sbjct: 201 LEENKPTRP---VIVSPANETMEVDLGSQIQLICNVTGQLSD-IAYWKWNGSVIDEDDPV 256

Query: 597 ---------KYHIMADGLGGYSIEINYLEAVDD-GEWKCVATSSSGVKQFSA 638
                                 + I+ +E+      + C A ++ G+     
Sbjct: 257 LGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYI 308

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  112 bits (281), Expect = 3e-27
 Identities = 48/319 (15%), Positives = 87/319 (27%), Gaps = 46/319 (14%)

Query: 555 KEVENVKAKIGTSAILECQVLVPPWPRSIYWY--NKEGVVEASDKYHIMADGLGGYSIEI 612
           +E   + +      +  C +       +I WY  + +  V       I         +  
Sbjct: 10  EEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK---EKLWF 66

Query: 613 NYLEAVDDGEWKCVATSSSGVKQFSAA-YVHVLMPKNYRKPRFVESLKAVMTDDGLVSFE 671
              +  D G + CV  +SS   +   +       P      + +   K  +  D      
Sbjct: 67  VPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGD--GGLV 124

Query: 672 C------KVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCVAKNV 715
           C      K      P LQW+KD + L   +++       L          G+Y C A   
Sbjct: 125 CPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYT 184

Query: 716 MGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL-KSCQATVNEEFKFTVQVSI 774
               +      IE            L       P  +    ++ +  +  + +    V+ 
Sbjct: 185 YLGKQYPITRVIEF---------ITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTG 235

Query: 775 SPEPKVSWFRDDQQVVESDNVKI-----------LKETLGVCHLKIHALEVADQA-EWKC 822
                  W  +   + E D V              + +  +  L I  +E       + C
Sbjct: 236 QLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTC 295

Query: 823 IATNDFGQSITSCFLKLNV 841
            A N  G       L   V
Sbjct: 296 FAKNTHGIDAAYIQLIYPV 314

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  108 bits (271), Expect = 6e-26
 Identities = 42/328 (12%), Positives = 72/328 (21%), Gaps = 70/328 (21%)

Query: 449 FFTKELEAILTEQG--TVSLECKVMGIPTP-QLIWYKDNKKIKAGDIFALTANPKDPSSL 505
              +E + IL           C +        + WYKD+ K       A   +      L
Sbjct: 6   CKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK-EKL 64

Query: 506 ----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIK 555
                     G Y C   N                             +          +
Sbjct: 65  WFVPAKVEDSGHYYCVVRNSSYCLRIKISA----------------KFVENEPNLCYNAQ 108

Query: 556 EVENVKAKIGTSAILECQVLVPPWPR-----SIYWYNKEGVVEASDKYHIMADGLGGYSI 610
            +   K  +     L C  +            + WY     +   + +           +
Sbjct: 109 AIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD----RL 164

Query: 611 EINYLEAVDDGEWKCVATSSSGVKQFSAA---YVHVLMPKNYRKPRFVESLKAVMT--DD 665
            +  +     G + C A+ +   KQ+          L      +P  V      M     
Sbjct: 165 IVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLG 224

Query: 666 GLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL-------------------- 705
             +   C V G  +    W  +   +   D        S+                    
Sbjct: 225 SQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEI 284

Query: 706 ------GSYCCVAKNVMGKAESSTQLTI 727
                   + C AKN  G   +  QL  
Sbjct: 285 ESRFYKHPFTCFAKNTHGIDAAYIQLIY 312

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  102 bits (256), Expect = 6e-24
 Identities = 47/282 (16%), Positives = 88/282 (31%), Gaps = 27/282 (9%)

Query: 179 FRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 238
           ++     P+   +   I++     L     + +D G Y     N S     K        
Sbjct: 41  YKDDSKTPVSTEQASRIHQHKEK-LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVEN 99

Query: 239 VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNR 298
            P+     + +    + V     L+       + +     NN +P     +   P+  + 
Sbjct: 100 EPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNE-----NNELPKLQWYKDCKPLLLDN 154

Query: 299 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESG----YSTAKFELSV-ESQVPDAPAFI 353
                   R  L +  V     G Y+  AS          T   E    E   P  P  +
Sbjct: 155 IHFSGVKDR--LIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIV 212

Query: 354 RRLHD-IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN------KIYRTQHDGNFYF 406
              ++ + V +G++ +L+  +        +W  N   ++E+        Y  ++  N   
Sbjct: 213 SPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRR 272

Query: 407 IDLSSV-------SLFDSGRWTCLAENAVGRSHCSCELSVLV 441
             L +V       S F    +TC A+N  G      +L   V
Sbjct: 273 STLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV 314

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 97.5 bits (242), Expect = 4e-22
 Identities = 43/276 (15%), Positives = 81/276 (29%), Gaps = 17/276 (6%)

Query: 76  GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 135
              P+   +   I++     L     + +D G Y     N S     K         P+ 
Sbjct: 45  SKTPVSTEQASRIHQHKEK-LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNL 103

Query: 136 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAI 195
               + +    + V     L+       + +     NN +P     +   P+  +     
Sbjct: 104 CYNAQAIFKQKLPVAGDGGLVCPYMEFFKNE-----NNELPKLQWYKDCKPLLLDNIHFS 158

Query: 196 NRDGRTELNIRRVRRDDGGRYSVTASNESG----YSTAKFELSV-ESQVPDAPAFIRRLH 250
               R  L +  V     G Y+  AS          T   E    E   P  P  +   +
Sbjct: 159 GVKDR--LIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPAN 216

Query: 251 D-IAVKVGTRARLLVEIRS--PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGR 307
           + + V +G++ +L+  +          +++ +           D+    N          
Sbjct: 217 ETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLI 276

Query: 308 TELNIRRVR-RDDGGRYSVTASNESGYSTAKFELSV 342
           T LNI  +  R     ++  A N  G   A  +L  
Sbjct: 277 TVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 77.8 bits (191), Expect = 2e-15
 Identities = 41/282 (14%), Positives = 71/282 (25%), Gaps = 53/282 (18%)

Query: 4   PTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTS 53
               + WYKD+ K       A   +      L          G Y C   N         
Sbjct: 34  HKGTITWYKDDSKTPVSTEQASRIHQHK-EKLWFVPAKVEDSGHYYCVVRNSSYCLRIKI 92

Query: 54  RV-IARGQQSFLDNDDVPFNRA------------------------------QGDHPIFG 82
                  + +   N    F +                               +   P+  
Sbjct: 93  SAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL 152

Query: 83  NRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG----YSTAKFELSV-ESQVPDAPA 137
           +         R  L +  V     G Y+  AS          T   E    E   P  P 
Sbjct: 153 DNIHFSGVKDR--LIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPV 210

Query: 138 FIRRLHD-IAVKVGTRARLLVEIRS--PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRA 194
            +   ++ + V +G++ +L+  +          +++ +           D+    N    
Sbjct: 211 IVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANK 270

Query: 195 INRDGRTELNIRRVR-RDDGGRYSVTASNESGYSTAKFELSV 235
                 T LNI  +  R     ++  A N  G   A  +L  
Sbjct: 271 RRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 30/178 (16%), Positives = 44/178 (24%), Gaps = 51/178 (28%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPK------DPSSLGTYTCEAVNCMG-AAFSTSR 54
               P+L WYKD K +   +I       +           G YTC A        +  +R
Sbjct: 135 NNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITR 194

Query: 55  VI------------------------------------ARGQQS-----FLDNDDVPFNR 73
           VI                                      GQ S       +   +  + 
Sbjct: 195 VIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDD 254

Query: 74  AQGDHPIFGNRFRAINRDGRTE--LNIRRVR-RDDGGRYSVTASNESGYSTAKFELSV 128
                  +     A  R       LNI  +  R     ++  A N  G   A  +L  
Sbjct: 255 PVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 49.0 bits (116), Expect = 5e-06
 Identities = 12/79 (15%), Positives = 19/79 (24%), Gaps = 10/79 (12%)

Query: 857 VLSEGGAVNLECKVIGVPQP-TLKWFKDGRELK-AGDIHKIISGEDGTCCL--------G 906
           V S        C +       T+ W+KD  +   + +    I                 G
Sbjct: 16  VSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSG 75

Query: 907 IYTCEAHNCMGTTSSSAAL 925
            Y C   N         + 
Sbjct: 76  HYYCVVRNSSYCLRIKISA 94

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  121 bits (306), Expect = 1e-30
 Identities = 42/296 (14%), Positives = 77/296 (26%), Gaps = 48/296 (16%)

Query: 455 EAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFA----LTANPKDPSSLGTYTC 510
           E ++    TV+L C   G     + W          D  +    LT       + GTY C
Sbjct: 13  ELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRC 68

Query: 511 EAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAIL 570
             +    A  +T  +  +                    PA  +    + V    G  A+L
Sbjct: 69  TELEDPMAGSTTIHLYVKD-------------------PAHSWNLLAQEVTVVEGQEAVL 109

Query: 571 ECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSS 630
            C +  P    S+    + G        +            I   + +D   + C    +
Sbjct: 110 PCLITDPALKDSVSLMREGGRQVLRKTVYFF---SPWRGFIIRKAKVLDSNTYVCKTMVN 166

Query: 631 SGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNE 689
                 +  ++ V    +   P+       ++   G      C             K  +
Sbjct: 167 GRESTSTGIWLKV-NRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGD 225

Query: 690 ELKPGD------VYQLTGTSSL----------GSYCCVAKNVMGKAESSTQLTIED 729
                               +L          G Y CVA N +G   ++    + +
Sbjct: 226 TKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVE 281

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  119 bits (300), Expect = 7e-30
 Identities = 39/266 (14%), Positives = 75/266 (28%), Gaps = 30/266 (11%)

Query: 283 PFSFRAQGDHPIF-----GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK 337
             + R   +  +         +        + L  R     + G Y  T   +    +  
Sbjct: 21  TVTLRCVSNGSVEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTT 80

Query: 338 FELSVESQVPDAPAFIRRLHDIAVKVGTRARL--LVEIRSPTEIKIHWYRNDRK-LEENK 394
             L V  + P A ++     ++ V  G  A L  L+   +  +  +   R   + +    
Sbjct: 81  IHLYV--KDP-AHSWNLLAQEVTVVEGQEAVLPCLITDPAL-KDSVSLMREGGRQVLRKT 136

Query: 395 IYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV-PKAYKAPFFTKE 453
           +Y       F    +    + DS  + C      GR   S  + + V     + P    E
Sbjct: 137 VYFFSPWRGFI---IRKAKVLDSNTYVCKTMVN-GRESTSTGIWLKVNRVHPEPPQIKLE 192

Query: 454 LEAILTEQG-TVSLECKVMGIPTPQLIWYKDNK-KIKAGDIFALTANPKDPSSL------ 505
              ++  +G    + C          +  K    K++         N             
Sbjct: 193 PSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAV 252

Query: 506 -----GTYTCEAVNCMGAAFSTSRVI 526
                G Y+C A N +G   +T    
Sbjct: 253 DFQDAGIYSCVASNDVGTRTATMNFQ 278

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  119 bits (299), Expect = 9e-30
 Identities = 47/281 (16%), Positives = 80/281 (28%), Gaps = 48/281 (17%)

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL--------GSYCCVAKNVMGKA 719
           V+  C   G    +++W          D      T +         G+Y C         
Sbjct: 22  VTLRCVSNG----SVEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAG 77

Query: 720 ESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVS-ISPEP 778
            ++  L ++D                  A  +    +       +E      ++  + + 
Sbjct: 78  STTIHLYVKD-----------------PAHSWNLLAQEVTVVEGQEAVLPCLITDPALKD 120

Query: 779 KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
            VS  R+  + V    V       G     I   +V D   + C    + G+  TS  + 
Sbjct: 121 SVSLMREGGRQVLRKTVYFFSPWRG---FIIRKAKVLDSNTYVCKTMVN-GRESTSTGIW 176

Query: 839 LNV-PKHYKKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGREL----KAGDI 892
           L V   H + P+   E    V   G A  + C             K G          D 
Sbjct: 177 LKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDF 236

Query: 893 HKIISGEDGTCCL--------GIYTCEAHNCMGTTSSSAAL 925
                 +     L        GIY+C A N +GT +++   
Sbjct: 237 QDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNF 277

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  118 bits (297), Expect = 2e-29
 Identities = 39/276 (14%), Positives = 78/276 (28%), Gaps = 23/276 (8%)

Query: 176 PFSFRAQGDHPIF-----GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK 230
             + R   +  +         +        + L  R     + G Y  T   +    +  
Sbjct: 21  TVTLRCVSNGSVEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTT 80

Query: 231 FELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG 290
             L V  + P A ++     ++ V  G              + C              + 
Sbjct: 81  IHLYV--KDP-AHSWNLLAQEVTVVEG----------QEAVLPCLITDPALKDSVSLMRE 127

Query: 291 DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNE-SGYSTAKFELSVESQVPDA 349
                  +             IR+ +  D   Y           ++    L V    P+ 
Sbjct: 128 GGRQVLRKTV-YFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEP 186

Query: 350 PAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLE--ENKIYRTQHDGNFYF 406
           P        +    G  A+++     +     +   R D KLE   N  ++  +      
Sbjct: 187 PQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRA 246

Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
           + L++V   D+G ++C+A N VG    +    V+  
Sbjct: 247 LSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVES 282

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  110 bits (277), Expect = 7e-27
 Identities = 35/308 (11%), Positives = 84/308 (27%), Gaps = 42/308 (13%)

Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGY 608
           PAP+       +  + G +  L C         S+ W          D          G 
Sbjct: 3   PAPVIEPSGPELVVEPGETVTLRCVS-----NGSVEWDGPISPYWTLD------PESPGS 51

Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLV 668
           ++        + G ++C           +  +++V  P        + + +  + +    
Sbjct: 52  TLTTRNATFKNTGTYRCTELEDPMAGS-TTIHLYVKDP---AHSWNLLAQEVTVVEGQEA 107

Query: 669 SFECKVVG-FPTPTLQWFKDNEELKPGD-VYQLTGTSSL----------GSYCCVAKNVM 716
              C +       ++   ++         VY  +                +Y C      
Sbjct: 108 VLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMV-N 166

Query: 717 GKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISP 776
           G+  +ST + ++  R H               P+             E  +     + + 
Sbjct: 167 GRESTSTGIWLKVNRVHPE------------PPQIKLEPSKLVRIRGEAAQIVCSATNAE 214

Query: 777 EPKVSWFRDDQQVVESDNVKILKETLGVCH--LKIHALEVADQAEWKCIATNDFGQSITS 834
                  +     +E       ++        L ++A++  D   + C+A+ND G    +
Sbjct: 215 VGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTAT 274

Query: 835 CFLKLNVP 842
              ++   
Sbjct: 275 MNFQVVES 282

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  107 bits (269), Expect = 8e-26
 Identities = 36/260 (13%), Positives = 67/260 (25%), Gaps = 22/260 (8%)

Query: 84  RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 143
            +        + L  R     + G Y  T   +    +    L V  + P A ++     
Sbjct: 41  YWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYV--KDP-AHSWNLLAQ 97

Query: 144 DIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTEL 203
           ++ V  G              + C              +        +            
Sbjct: 98  EVTVVEG----------QEAVLPCLITDPALKDSVSLMREGGRQVLRKTV-YFFSPWRGF 146

Query: 204 NIRRVRRDDGGRYSVTASNE-SGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 262
            IR+ +  D   Y           ++    L V    P+ P        +    G  A++
Sbjct: 147 IIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQI 206

Query: 263 LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGR 322
           +    +        ++   +              + F+         L++  V   D G 
Sbjct: 207 VCSATNA-------EVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGI 259

Query: 323 YSVTASNESGYSTAKFELSV 342
           YS  ASN+ G  TA     V
Sbjct: 260 YSCVASNDVGTRTATMNFQV 279

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 87.7 bits (217), Expect = 6e-19
 Identities = 30/224 (13%), Positives = 58/224 (25%), Gaps = 32/224 (14%)

Query: 36  GTYTCEAVNCMGAAFSTSRVIARG----------QQSFLDNDDVPFN-RAQG-------- 76
           GTY C  +    A  +T  +  +           + + ++  +                 
Sbjct: 64  GTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVS 123

Query: 77  ----DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNE-SGYSTAKFELSVESQ 131
                      +             IR+ +  D   Y           ++    L V   
Sbjct: 124 LMREGGRQVLRKTV-YFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRV 182

Query: 132 VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNR 191
            P+ P        +    G  A+++    +        ++   +              + 
Sbjct: 183 HPEPPQIKLEPSKLVRIRGEAAQIVCSATNA-------EVGFNVILKRGDTKLEIPLNSD 235

Query: 192 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
           F+         L++  V   D G YS  ASN+ G  TA     V
Sbjct: 236 FQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 68.4 bits (167), Expect = 2e-12
 Identities = 24/191 (12%), Positives = 43/191 (22%), Gaps = 29/191 (15%)

Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
           AP              E        +      V W          D             L
Sbjct: 4   APVIEPSGPELVVEPGETVTLRCVSN----GSVEWDGPISPYWTLDPES------PGSTL 53

Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVNL 866
                   +   ++C    D     T+  L +  P       +    + V + EG    L
Sbjct: 54  TTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPA----HSWNLLAQEVTVVEGQEAVL 109

Query: 867 ECKVIG-VPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCEAHNC 915
            C +     + ++   ++G            S   G                Y C+    
Sbjct: 110 PCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG---FIIRKAKVLDSNTYVCKTMVN 166

Query: 916 MGTTSSSAALL 926
              ++S+   L
Sbjct: 167 GRESTSTGIWL 177

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 24/164 (14%), Positives = 43/164 (26%), Gaps = 37/164 (22%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPKD-------PSSLGTYTCEAVNCMGAAFS--- 51
                 +   ++  +          +  +             TY C+ +     + S   
Sbjct: 116 PALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGI 175

Query: 52  ------------------TSRVIARGQQSFL----DNDDVPF-----NRAQGDHPIFGNR 84
                             +  V  RG+ + +     N +V F                + 
Sbjct: 176 WLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSD 235

Query: 85  FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
           F+         L++  V   D G YS  ASN+ G  TA     V
Sbjct: 236 FQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score =  117 bits (294), Expect = 4e-30
 Identities = 41/195 (21%), Positives = 75/195 (38%), Gaps = 25/195 (12%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSIS-PEPKVSWFRDDQQVVESDNVKIL--------K 799
             F+    +             Q+ +    P+V W RD Q +  +D+ +           
Sbjct: 3   SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62

Query: 800 ETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK-AVL 858
           + + V  L+I +L+++D  +++C+       +  S    + +      P FLEE +   +
Sbjct: 63  DWIVVSQLRITSLQLSDTGQYQCLVFLGHQ-TFVSQPGYVGL---EGLPYFLEEPEDRTV 118

Query: 859 SEGGAVNLECKVIGVPQPT-LKWFKDGRELKAGDIH------KIISGEDGTCCLGIYTCE 911
           +     NL C+  G P+P  L W +D   L     H       +            ++CE
Sbjct: 119 AANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKT----SSFSCE 174

Query: 912 AHNCMGTTSSSAALL 926
           AHN  G T+S  A +
Sbjct: 175 AHNAKGVTTSRTATI 189

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score =  104 bits (261), Expect = 1e-25
 Identities = 38/191 (19%), Positives = 64/191 (33%), Gaps = 21/191 (10%)

Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMA-------- 602
             F+    N+    G +  L CQ+ V   P  ++W     ++E +D              
Sbjct: 3   SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62

Query: 603 DGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVM 662
           D +    + I  L+  D G+++C+             YV +        P F+E  +   
Sbjct: 63  DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGL-----PYFLEEPEDRT 117

Query: 663 TDDG-LVSFECKVVGFPTPT-LQWFKDNEELKPGDVY------QLTGTSSLGSYCCVAKN 714
                  +  C+  G P P  L W +D   L     +       + G +   S+ C A N
Sbjct: 118 VAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAHN 177

Query: 715 VMGKAESSTQL 725
             G   S T  
Sbjct: 178 AKGVTTSRTAT 188

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 98.4 bits (245), Expect = 2e-23
 Identities = 33/208 (15%), Positives = 67/208 (32%), Gaps = 19/208 (9%)

Query: 241 DAPAFIRRLHDIAVKVGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPIFGN 297
           +   F+    +I    G    L  +++    P E+    D    +  +   Q   P+  +
Sbjct: 1   EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRD-GQILELADSTQTQVPLGED 59

Query: 298 RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG-YSTAKFELSVESQVPDAPAFIRRL 356
                    +  L I  ++  D G+Y          + +    + +E      P F+   
Sbjct: 60  EQDDWIVVSQ--LRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG----LPYFLEEP 113

Query: 357 HDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLF 415
            D  V   T   L  + +  P  + + W ++   L     +  Q         L    L 
Sbjct: 114 EDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRS-------LHVPGLN 166

Query: 416 DSGRWTCLAENAVGRSHCSCELSVLVPK 443
            +  ++C A NA G +        ++P+
Sbjct: 167 KTSSFSCEAHNAKGVTTSRTATITVLPQ 194

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 97.7 bits (243), Expect = 3e-23
 Identities = 42/221 (19%), Positives = 67/221 (30%), Gaps = 49/221 (22%)

Query: 448 PFFTKELEAILTEQG-TVSLECKVM-GIPTPQLIWYKDNKKIKAGDIFALTANPKDP--- 502
             F      I   +G T +L C++      P++ W +D + ++  D         +    
Sbjct: 3   SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62

Query: 503 -----SSL----------GTYTCEAVNCMGAAFSTS-RVIARGQQSFLDNDDVPFNSLMP 546
                S L          G Y C          S    V   G                 
Sbjct: 63  DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG----------------- 105

Query: 547 PGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLG 606
               P F++E E+      T   L CQ   PP P  + W  ++ V  A+   H       
Sbjct: 106 ---LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWL-QDAVPLATAPGH-----GP 156

Query: 607 GYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPK 647
             S+ +  L       + C A ++ GV     A + VL  +
Sbjct: 157 QRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITVLPQQ 195

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 87.3 bits (216), Expect = 1e-19
 Identities = 37/216 (17%), Positives = 61/216 (28%), Gaps = 53/216 (24%)

Query: 652 PRFVESLKAVMTDDGL-VSFECKV-VGFPTPTLQWFKDNEELKPGD------------VY 697
             FV +   +    GL  +  C++ V    P + W +D + L+  D              
Sbjct: 3   SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62

Query: 698 QLTGTSSL----------GSYCCVAKNVMGKAESST-QLTIEDIRNHLSEEDKLLLLTNN 746
                S L          G Y C+         S    + +E                  
Sbjct: 63  DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG----------------- 105

Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEP-KVSWFRDDQQVVESDNVKILKETLGVC 805
             P F+E  +      N  F  + Q    PEP  + W +D   +  +             
Sbjct: 106 -LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGP-------- 156

Query: 806 HLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
              +H   +   + + C A N  G   TS    + V
Sbjct: 157 QRSLHVPGLNKTSSFSCEAHNAKG-VTTSRTATITV 191

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 78.4 bits (193), Expect = 1e-16
 Identities = 30/211 (14%), Positives = 62/211 (29%), Gaps = 33/211 (15%)

Query: 134 DAPAFIRRLHDIAVKVGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPIFGN 190
           +   F+    +I    G    L  +++    P E+    D    +  +   Q   P+  +
Sbjct: 1   EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRD-GQILELADSTQTQVPLGED 59

Query: 191 RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG-YSTAKFELSVESQVPDAPAFIRRL 249
                    +  L I  ++  D G+Y          + +    + +E      P F+   
Sbjct: 60  EQDDWIVVSQ--LRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG----LPYFLEEP 113

Query: 250 HDIAVKVGTRARLLVEIR---SPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDG 306
            D  V   T   L  + +    P ++    D               P+         R  
Sbjct: 114 EDRTVAANTPFNLSCQAQGPPEPVDLLWLQD-------------AVPLATAPGHGPQR-- 158

Query: 307 RTELNIRRVRRDDGGRYSVTASNESGYSTAK 337
               ++     +    +S  A N  G +T++
Sbjct: 159 ----SLHVPGLNKTSSFSCEAHNAKGVTTSR 185

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 68.4 bits (167), Expect = 3e-13
 Identities = 23/172 (13%), Positives = 46/172 (26%), Gaps = 28/172 (16%)

Query: 63  FLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG-YST 121
             D   +    +       G   +         L I  ++  D G+Y          + +
Sbjct: 38  LRDGQILELADSTQTQVPLGEDEQDDWIVVSQ-LRITSLQLSDTGQYQCLVFLGHQTFVS 96

Query: 122 AKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR---SPTEIKCQFDLNNTIPFS 178
               + +E      P F+    D  V   T   L  + +    P ++    D        
Sbjct: 97  QPGYVGLEG----LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQD-------- 144

Query: 179 FRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK 230
                  P+         R      ++     +    +S  A N  G +T++
Sbjct: 145 -----AVPLATAPGHGPQR------SLHVPGLNKTSSFSCEAHNAKGVTTSR 185

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 56.4 bits (136), Expect = 5e-09
 Identities = 20/109 (18%), Positives = 33/109 (30%), Gaps = 20/109 (18%)

Query: 848 PKFLEELKAVL-SEGGAVNLECKV-IGVPQPTLKWFKDGRELKAGDIHKIIS--GEDGTC 903
             F+     +  + G    L C++ +    P + W +DG+ L+  D  +     GED   
Sbjct: 3   SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62

Query: 904 CL----------------GIYTCEAHNCMGTTSSSAALLGFEDKSQIEK 936
                             G Y C       T  S    +G E      +
Sbjct: 63  DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLE 111

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 52.6 bits (126), Expect = 9e-08
 Identities = 25/158 (15%), Positives = 44/158 (27%), Gaps = 37/158 (23%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPKDP--------SSL----------GTYTCEAV 43
               P++ W +D + ++  D         +         S L          G Y C   
Sbjct: 29  QGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVF 88

Query: 44  NCMGAAFSTS-RVIARGQQSFLD---------NDDVPFN-RAQGD-HPIF------GNRF 85
                  S    V   G   FL+         N     + +AQG   P+           
Sbjct: 89  LGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPL 148

Query: 86  RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK 123
                 G  + ++     +    +S  A N  G +T++
Sbjct: 149 ATAPGHGP-QRSLHVPGLNKTSSFSCEAHNAKGVTTSR 185

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score =  120 bits (301), Expect = 2e-29
 Identities = 51/397 (12%), Positives = 110/397 (27%), Gaps = 69/397 (17%)

Query: 555 KEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADG---------- 604
           K+V  V  K G +  L C           +W N   +    ++   +  G          
Sbjct: 1   KKV--VLGKKGDTVELTCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADS 57

Query: 605 ------LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESL 658
                  G + + I  L+  D   + C         +       +    +          
Sbjct: 58  RRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKE--EVQLLVFGLTANSDTH-------- 107

Query: 659 KAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD----VYQLTGTSSLGSYCCVAKN 714
             ++     ++   +     +P++Q      +   G     V QL    S G++ C    
Sbjct: 108 --LLQGQS-LTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDS-GTWTCTVLQ 163

Query: 715 VMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSI 774
              K E    + +   +   S   K        +      ++    +   E  +  + + 
Sbjct: 164 NQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSG--ELWWQAERAS 221

Query: 775 SPEPKVSWFRDDQQVV---ESDNVKILKETLGVCHLKIH--ALEVADQAEWKCIATNDFG 829
           S +  +++   +++V     + + K+        HL +     + A             G
Sbjct: 222 SSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTG 281

Query: 830 QSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQP--TLKWFKDGREL 887
           +      + L V +               +     NL C+V G   P   L    + +E 
Sbjct: 282 K--LHQEVNLVVMR---------------ATQLQKNLTCEVWGPTSPKLMLSLKLENKEA 324

Query: 888 KAGDIHKI--ISGEDGTCCLGIYTCEAHNCMGTTSSS 922
           K     K   +   +     G++ C   +       S
Sbjct: 325 KVSKREKAVWVLNPEA----GMWQCLLSDSGQVLLES 357

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score =  103 bits (258), Expect = 8e-24
 Identities = 51/397 (12%), Positives = 105/397 (26%), Gaps = 67/397 (16%)

Query: 359 IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID---------- 408
           +  K G    L         I+ HW  +++             G     D          
Sbjct: 4   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63

Query: 409 -------LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQ 461
                  + ++ + DS  + C  E+            +               +  L + 
Sbjct: 64  QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTANS-----------DTHLLQG 111

Query: 462 GTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFS 521
            +++L  +     +P +       K   G    L+ +  +    GT+TC  +        
Sbjct: 112 QSLTLTLESPPGSSPSVQCRSPRGKNIQGG-KTLSVSQLELQDSGTWTCTVLQNQKKVEF 170

Query: 522 TSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQ---VLVPP 578
              ++    Q                G    F   +     K+  S  L  Q        
Sbjct: 171 KIDIVVLAFQK------ASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSK 224

Query: 579 WPRSIYWYNKEGVVEAS---DKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQ 635
              +    NKE  V+      K  +        ++     +    G       + +G K 
Sbjct: 225 SWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTG-KL 283

Query: 636 FSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTP--TLQWFKDNEELKP 693
                + V+             L+  +T        C+V G  +P   L    +N+E K 
Sbjct: 284 HQEVNLVVMR---------ATQLQKNLT--------CEVWGPTSPKLMLSLKLENKEAKV 326

Query: 694 GD---VYQLTGTSSLGSYCCVAKNVMGKAESSTQLTI 727
                   +    + G + C+  +  G+    + + +
Sbjct: 327 SKREKAVWVLNPEA-GMWQCLLSDS-GQVLLESNIKV 361

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 95.6 bits (237), Expect = 4e-21
 Identities = 49/395 (12%), Positives = 113/395 (28%), Gaps = 75/395 (18%)

Query: 59  GQQSFLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG 118
            Q   L N      +         +  R++   G   L I+ ++ +D   Y     ++  
Sbjct: 32  NQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKE 91

Query: 119 YSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFS 178
                    V+  V    A      D  +  G    L            +    ++    
Sbjct: 92  --------EVQLLVFGLTAN----SDTHLLQGQSLTL----------TLESPPGSSPSVQ 129

Query: 179 FRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 238
            R+     I G +           L++ ++   D G ++ T          K ++ V + 
Sbjct: 130 CRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAF 179

Query: 239 VPDAPAFIRRLHDIAVKVGTRARLLVE-IRSPTEIKCQFD----LNNTIPFSFRAQGDHP 293
              A + + +     V+        VE +    E+  Q +      + I F  + +    
Sbjct: 180 QK-ASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSV 238

Query: 294 IFGNRFRAINRDGRTELNIRR----VRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 349
               +   +    +  L++       +    G  ++    ++G    +  L V  +    
Sbjct: 239 KRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVM-RATQL 297

Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPT--EIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
                              L  E+  PT  ++ +     +++ + +K  +          
Sbjct: 298 QK----------------NLTCEVWGPTSPKLMLSLKLENKEAKVSKREK---------- 331

Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
               V   ++G W CL  ++        E ++ V 
Sbjct: 332 -AVWVLNPEAGMWQCLLSDSGQV---LLESNIKVL 362

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 92.9 bits (230), Expect = 3e-20
 Identities = 48/339 (14%), Positives = 94/339 (27%), Gaps = 75/339 (22%)

Query: 198 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVG 257
            G   L I+ ++ +D   Y     ++           V+  V    A      D  +  G
Sbjct: 64  QGNFPLIIKNLKIEDSDTYICEVEDQKE--------EVQLLVFGLTAN----SDTHLLQG 111

Query: 258 TRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRR 317
               L            +    ++     R+     I G +           L++ ++  
Sbjct: 112 QSLTL----------TLESPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLEL 151

Query: 318 DDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPT 377
            D G ++ T          K ++ V +    A + + +     V+        VE  + +
Sbjct: 152 QDSGTWTCTVLQNQKKVEFKIDIVVLAFQK-ASSIVYKKEGEQVEFSFPLAFTVEKLTGS 210

Query: 378 ---------------EIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLS----SVSLFDSG 418
                           I       +  ++          G    + L+          SG
Sbjct: 211 GELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSG 270

Query: 419 RWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQL 478
             T   E   G+ H    L V+                    Q   +L C+V G  +P+L
Sbjct: 271 NLTLALEAKTGKLHQEVNLVVMRA-----------------TQLQKNLTCEVWGPTSPKL 313

Query: 479 I--WYKDNKKIKAGD-IFALTANPKDPSSLGTYTCEAVN 514
           +     +NK+ K      A+     +    G + C   +
Sbjct: 314 MLSLKLENKEAKVSKREKAVWVLNPEA---GMWQCLLSD 349

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 88.7 bits (219), Expect = 7e-19
 Identities = 57/446 (12%), Positives = 114/446 (25%), Gaps = 143/446 (32%)

Query: 455 EAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL-------- 505
           + +L ++G TV L C      + Q  W   N+    G+  +         +         
Sbjct: 2   KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSL 61

Query: 506 ------------------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPP 547
                              TY CE  +          V             + F      
Sbjct: 62  WDQGNFPLIIKNLKIEDSDTYICEVED------QKEEV-----------QLLVFGLTANS 104

Query: 548 GPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGG 607
                      +     G S  L  +      P S+   +  G               GG
Sbjct: 105 -----------DTHLLQGQSLTLTLESPPGSSP-SVQCRSPRGKNI-----------QGG 141

Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAV------ 661
            ++ ++ LE  D G W C    +    +F    + VL  +      + +  + V      
Sbjct: 142 KTLSVSQLELQDSGTWTCTVLQNQKKVEFK-IDIVVLAFQKASSIVYKKEGEQVEFSFPL 200

Query: 662 ------MTDDGLVSFECKVVGFPTPTLQWFKDNEEL-----KPGDVYQLTGTSSL----- 705
                 +T  G + ++ +        + +   N+E+           Q+     L     
Sbjct: 201 AFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLP 260

Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLK 756
                    G+     +   GK      L +       ++  K L               
Sbjct: 261 QALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRA----TQLQKNL--------------- 301

Query: 757 SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVAD 816
           +C+          V    SP+  +S   ++++   S               K   +   +
Sbjct: 302 TCE----------VWGPTSPKLMLSLKLENKEAKVSK------------REKAVWVLNPE 339

Query: 817 QAEWKCIATNDFGQSITSCFLKLNVP 842
              W+C+ ++     + S    + V 
Sbjct: 340 AGMWQCLLSDSGQVLLES---NIKVL 362

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 87.2 bits (215), Expect = 3e-18
 Identities = 34/252 (13%), Positives = 76/252 (30%), Gaps = 40/252 (15%)

Query: 759 QATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESD----------------NVKILKETL 802
                +  + T   S     +  W   +Q  +  +                + +      
Sbjct: 5   LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64

Query: 803 GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGG 862
           G   L I  L++ D   + C   +   + +      L                  L +G 
Sbjct: 65  GNFPLIIKNLKIEDSDTYICEVEDQKEE-VQLLVFGLTANS-----------DTHLLQGQ 112

Query: 863 AVNLECKVIGVPQPTLKWFKDGRELKAGD----IHKIISGEDGTCCLGIYTCEAHNCMGT 918
           ++ L  +      P+++      +   G     + + +  +D     G +TC        
Sbjct: 113 SLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQ-LELQDS----GTWTCTVLQNQKK 167

Query: 919 TSSSAALL--GFEDKSQIEKAEEGKKALIVKDPSLSTIQEEGTSEIYDTPMAS-IEEREI 975
                 ++   F+  S I   +EG++       + +  +  G+ E++     +   +  I
Sbjct: 168 VEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWI 227

Query: 976 SFSFDGKEVSVS 987
           +F    KEVSV 
Sbjct: 228 TFDLKNKEVSVK 239

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 85.6 bits (211), Expect = 8e-18
 Identities = 32/299 (10%), Positives = 71/299 (23%), Gaps = 62/299 (20%)

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGSYCCVAKNVMGKAESSTQLTI 727
           V   C      +    W   N+    G+                        + +  L I
Sbjct: 12  VELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLII 71

Query: 728 EDIR------------NHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSIS 775
           ++++            +   EE +LL+                     +    T++    
Sbjct: 72  KNLKIEDSDTYICEVEDQ-KEEVQLLVFGLTANS-------DTHLLQGQSLTLTLESPPG 123

Query: 776 PEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSC 835
             P V       + ++               L +  LE+ D   W C    +  +     
Sbjct: 124 SSPSVQCRSPRGKNIQGGKT-----------LSVSQLELQDSGTWTCTVLQNQKKV--EF 170

Query: 836 FLKLNVPKHYKKPKFLEELK--------------AVLSEGGAVNLECKVIGVPQPTLKWF 881
            + + V    K    + + +                L+  G +  + +     +  + + 
Sbjct: 171 KIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFD 230

Query: 882 KDGREL---KAGDIHKIISGEDGTCCL------------GIYTCEAHNCMGTTSSSAAL 925
              +E+   +     K+  G+     L            G  T       G       L
Sbjct: 231 LKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNL 289

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 76.0 bits (186), Expect = 1e-14
 Identities = 44/382 (11%), Positives = 95/382 (24%), Gaps = 81/382 (21%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL-------------------------- 35
              + Q  W   N+    G+  +         +                           
Sbjct: 20  QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDS 79

Query: 36  GTYTCEAVNCMGAA-FSTSRVIARGQQSFLDNDDVPFN-RAQGD-HPIF---GNRFRAIN 89
            TY CE  +           + A      L    +     +     P       R + I 
Sbjct: 80  DTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ 139

Query: 90  RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKV 149
                 L++ ++   D G ++ T          K ++ V +    A + + +     V+ 
Sbjct: 140 GGK--TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK-ASSIVYKKEGEQVEF 196

Query: 150 GTRARLLVE-IRSPTEIKCQFD----LNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELN 204
                  VE +    E+  Q +      + I F  + +        +   +    +  L+
Sbjct: 197 SFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLH 256

Query: 205 IRR----VRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRA 260
           +       +    G  ++    ++G    +  L V  +                      
Sbjct: 257 LTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVM-RATQLQ----------------K 299

Query: 261 RLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDG 320
            L  E+  PT        +  +  S + +        R                V   + 
Sbjct: 300 NLTCEVWGPT--------SPKLMLSLKLENKEAKVSKR-----------EKAVWVLNPEA 340

Query: 321 GRYSVTASNESGYSTAKFELSV 342
           G +    S+ SG    +  + V
Sbjct: 341 GMWQCLLSD-SGQVLLESNIKV 361

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  114 bits (288), Expect = 5e-29
 Identities = 53/201 (26%), Positives = 77/201 (38%), Gaps = 26/201 (12%)

Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVK---ILKETLG 803
           ++P+ IE         NE      +V   PEP + WF+D + V  ++        K+   
Sbjct: 8   QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67

Query: 804 VCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVL-SEGG 862
             +  +   +  D  E+ C+A N  GQ   S    L +     +  F  E K    ++G 
Sbjct: 68  FFYRTMQGKKEQDGGEYWCVAKNRVGQ-AVSRHASLQI--AVLRDDFRVEPKDTRVAKGE 124

Query: 863 AVNLEC-KVIGVPQPTLKWFKDGRELKAGDIHKIISG------EDGTCCL---------- 905
              LEC    G+P+PTL W KDG  L         +       + G   L          
Sbjct: 125 TALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGN--LLISNVEPIDE 182

Query: 906 GIYTCEAHNCMGTTSSSAALL 926
           G Y C A N +GT  SS A L
Sbjct: 183 GNYKCIAQNLVGTRESSYAKL 203

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  106 bits (265), Expect = 6e-26
 Identities = 54/229 (23%), Positives = 80/229 (34%), Gaps = 45/229 (19%)

Query: 649 YRKPRFVESLK-AVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD----VYQLTGTS 703
           Y+ PR +E     V+  +   +  CKV G P PT++WFKD E +   +      Q    +
Sbjct: 7   YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGA 66

Query: 704 SL-------------GSYCCVAKNVMGKAES-STQLTIEDIRNHLSEEDKLLLLTNNKAP 749
                          G Y CVAKN +G+A S    L I  +R                  
Sbjct: 67  LFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLR-----------------D 109

Query: 750 KFIEGLKSCQATVNEEFKFT-VQVSISPEPKVSWFRDDQQVVESDNVKILKE----TLGV 804
            F    K  +    E            PEP + W +D   + +   +          +  
Sbjct: 110 DFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDG 169

Query: 805 CHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEE 853
            +L I  +E  D+  +KCIA N  G +  S + KL V     K      
Sbjct: 170 GNLLISNVEPIDEGNYKCIAQNLVG-TRESSYAKLIV---QVKAAAHHH 214

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  103 bits (258), Expect = 6e-25
 Identities = 51/233 (21%), Positives = 90/233 (38%), Gaps = 54/233 (23%)

Query: 441 VPKAYKAPFFTKELE-AILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD-------- 491
           +   Y++P   +     ++ +    +L CKV G P P + W+KD + +   +        
Sbjct: 3   LAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQF 62

Query: 492 -----IFALTANPKDPSSLGTYTCEAVNCMGAAFSTS---RVIARGQQSFLDNDDVPFNS 543
                 F  T   K     G Y C A N +G A S     ++                  
Sbjct: 63  KDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAV---------------- 106

Query: 544 LMPPGPAPIFIKEVENVKAKIGTSAILEC-QVLVPPWPRSIYWYNKEGV---------VE 593
                    F  E ++ +   G +A+LEC      P P ++ W  K+GV           
Sbjct: 107 -----LRDDFRVEPKDTRVAKGETALLECGPPKGIPEP-TLIWI-KDGVPLDDLKAMSFG 159

Query: 594 ASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
           AS +  I+  G    ++ I+ +E +D+G +KC+A +  G ++ S A + V + 
Sbjct: 160 ASSRVRIVDGG----NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVK 208

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 82.2 bits (203), Expect = 9e-18
 Identities = 46/219 (21%), Positives = 77/219 (35%), Gaps = 20/219 (9%)

Query: 232 ELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD 291
            L+ + Q   +P  I    D+ VK    A L  ++    E   ++  +   P S   +  
Sbjct: 2   PLAGQYQ---SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDG-EPVSTNEKKS 57

Query: 292 HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQVPDAP 350
           H     R +  +        ++  +  DGG Y   A N  G + +    L +        
Sbjct: 58  H-----RVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVL---RD 109

Query: 351 AFIRRLHDIAVKVGTRARLL-VEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID- 408
            F     D  V  G  A L     +   E  + W ++   L++ K            +D 
Sbjct: 110 DFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDG 169

Query: 409 ----LSSVSLFDSGRWTCLAENAVGRSHCSC-ELSVLVP 442
               +S+V   D G + C+A+N VG    S  +L V V 
Sbjct: 170 GNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVK 208

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 74.1 bits (182), Expect = 6e-15
 Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 29/130 (22%)

Query: 841 VPKHYKKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGD-------- 891
           +   Y+ P+ +E     V+ +     L CKV G P+PT++WFKDG  +   +        
Sbjct: 3   LAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQF 62

Query: 892 ------IHKIISG---EDGTCCLGIYTCEAHNCMGTTSSSAALL-------GFEDKSQIE 935
                  ++ + G   +DG    G Y C A N +G   S  A L        F  + +  
Sbjct: 63  KDGALFFYRTMQGKKEQDG----GEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDT 118

Query: 936 KAEEGKKALI 945
           +  +G+ AL+
Sbjct: 119 RVAKGETALL 128

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 64.9 bits (158), Expect = 9e-12
 Identities = 49/238 (20%), Positives = 75/238 (31%), Gaps = 28/238 (11%)

Query: 125 ELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD 184
            L+ + Q   +P  I    D+ VK    A L  ++    E   ++  +   P S   +  
Sbjct: 2   PLAGQYQ---SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDG-EPVSTNEKKS 57

Query: 185 HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQVPDAP 243
           H     R +  +        ++  +  DGG Y   A N  G + +    L +        
Sbjct: 58  H-----RVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVL---RD 109

Query: 244 AFIRRLHDIAVKVGTRARLL-VEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 300
            F     D  V  G  A L     +  P   +    D    +      +       +R R
Sbjct: 110 DFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKD-GVPLDDL---KAMSFGASSRVR 165

Query: 301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKF-ELSVESQVPDAPAFIRRLH 357
            I   G   L I  V   D G Y   A N  G   + + +L V  QV    A     H
Sbjct: 166 -IVDGG--NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV--QVK--AAAHHHHH 216

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 63.3 bits (154), Expect = 3e-11
 Identities = 42/189 (22%), Positives = 59/189 (31%), Gaps = 54/189 (28%)

Query: 2   GIPTPQLIWYKDNKKIKAGD-------------IFALTANPKDPSSLGTYTCEAVNCMGA 48
           G P P + W+KD + +   +              F  T   K     G Y C A N +G 
Sbjct: 35  GKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQ 94

Query: 49  AFS------------------TSRVIARGQQSFLD---------------NDDVPFNRAQ 75
           A S                      +A+G+ + L+                D VP +  +
Sbjct: 95  AVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLK 154

Query: 76  GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKF-ELSVESQVPD 134
                  +R R I   G   L I  V   D G Y   A N  G   + + +L V  QV  
Sbjct: 155 AMSFGASSRVR-IVDGG--NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV--QVK- 208

Query: 135 APAFIRRLH 143
             A     H
Sbjct: 209 -AAAHHHHH 216

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 38/176 (21%), Positives = 53/176 (30%), Gaps = 21/176 (11%)

Query: 82  GNRFRAINRDG--RTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQVPDAPAF 138
               R   +DG       ++  +  DGG Y   A N  G + +    L +         F
Sbjct: 55  KKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVL---RDDF 111

Query: 139 IRRLHDIAVKVGTRARLL-VEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAI 195
                D  V  G  A L     +  P   +    D    +      +       +R R I
Sbjct: 112 RVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKD-GVPLDDL---KAMSFGASSRVR-I 166

Query: 196 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKF-ELSVESQVPDAPAFIRRLH 250
              G   L I  V   D G Y   A N  G   + + +L V  QV    A     H
Sbjct: 167 VDGG--NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV--QVK--AAAHHHHH 216

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score =  122 bits (307), Expect = 5e-29
 Identities = 76/534 (14%), Positives = 157/534 (29%), Gaps = 84/534 (15%)

Query: 203 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 262
           +NI ++ +DD GRY       S          V  +V   P  +       V +G    +
Sbjct: 77  VNIAQLSQDDSGRYKCGLGINSR----GLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTI 132

Query: 263 LVEIRS--PTEIK--CQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE----LNIRR 314
               ++    + K   +      +     +   +P +  R R ++  G  +    + I +
Sbjct: 133 NCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIR-LDIQGTGQLLFSVVINQ 191

Query: 315 VRRDDGGRYSVTASNESGYSTAKFELSV-----ESQVPDAPAFIRRLHDIAVKVGTRARL 369
           +R  D G+Y   A ++S  +    +L V     E    D    +     +  +V   A+ 
Sbjct: 192 LRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKF 251

Query: 370 LVEIRSPTEIKIHWYRNDRKLE--ENKIYRTQHDGNFYF-IDLSSVSLFDSGRWTCLAEN 426
           L    S     +      ++    E +I     D +  F + ++ +   D+GR+ C A +
Sbjct: 252 LCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHS 311

Query: 427 AVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKK 486
                  S   +  +    ++               +V++ C      +  + ++   + 
Sbjct: 312 DGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEG 371

Query: 487 IKAGDI-----------------FALTANPKDPSSL-----------GTYTCEAVNCMGA 518
            + G                    +L   P + +             G Y C        
Sbjct: 372 AQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLW 431

Query: 519 AFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPP 578
             +                       +        +K   NV A +G +  + C      
Sbjct: 432 RTTVE---------------------IKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKF 470

Query: 579 WPRSIYW--YNKEGV-------VEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATS 629
                YW  +N  G           S  +    +     S+ +N +   D+G + C    
Sbjct: 471 SSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQ 530

Query: 630 SSGVKQFSAAYVHV-----LMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFP 678
                + +A YV V        ++    +   +    + D G    E K +  P
Sbjct: 531 GHFYGETAAVYVAVEERKAAGSRDVSLAKADAAPDEKVLDSGFREIENKAIQDP 584

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score =  115 bits (289), Expect = 8e-27
 Identities = 69/494 (13%), Positives = 131/494 (26%), Gaps = 100/494 (20%)

Query: 310 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 369
           +NI ++ +DD GRY       S          V  +V   P  +       V +G    +
Sbjct: 77  VNIAQLSQDDSGRYKCGLGINSR----GLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTI 132

Query: 370 LVEIRS-PTEIKIHWYRNDRKLEENKIY---------------RTQHDGNFYF-IDLSSV 412
               ++   + +   Y+         I                  Q  G   F + ++ +
Sbjct: 133 NCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQL 192

Query: 413 SLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQ--------GTV 464
            L D+G++ C A +    +  + +L VL P+        ++L   +T             
Sbjct: 193 RLSDAGQYLCQAGDDSNSNKKNADLQVLKPEP---ELVYEDLRGSVTFHCALGPEVANVA 249

Query: 465 SLECKVMGIPTPQLIWYKDNKKIKAGD------------IFALTANPKDPSSLGTYTCEA 512
              C+        ++     K+  A +             F++          G Y C A
Sbjct: 250 KFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGA 309

Query: 513 VNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILEC 572
            +                   L          +         +    VK   G+S  + C
Sbjct: 310 HSDGQ----------------LQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLC 353

Query: 573 QVLVPPWPRSIYWYNKEGVVEASDKYHIMADGL------GGYSI-----------EINYL 615
                      YW   EG         + ++G       G  S+            +N L
Sbjct: 354 PYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQL 413

Query: 616 EAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVV 675
            + D G + C+    +  +      +    P           L   +       F CK  
Sbjct: 414 TSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVP--CHFPCKFS 471

Query: 676 GFPTPTLQWFKDNEELKPGD----------VYQLTGTSSL----------GSY-CCVAKN 714
            +     +W     +  P              + +   SL          G Y C V + 
Sbjct: 472 SYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQG 531

Query: 715 VMGKAESSTQLTIE 728
                 ++  + +E
Sbjct: 532 HFYGETAAVYVAVE 545

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score =  113 bits (282), Expect = 5e-26
 Identities = 60/583 (10%), Positives = 126/583 (21%), Gaps = 143/583 (24%)

Query: 446 KAPFFT-KELEAILTEQGTVSLECKV---MGIPTPQLIWYKDNKKIK------------- 488
           K+P F  +E+ +   E  +VS+ C           +  W +   +               
Sbjct: 1   KSPIFGPEEVNS--VEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSS 58

Query: 489 ------------AGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDN 536
                           F +          G Y C                        ++
Sbjct: 59  KYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGI--------------------NS 98

Query: 537 DDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV----- 591
             + F+  +     P  + + +     +G +  + C        +    Y + G+     
Sbjct: 99  RGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLV 158

Query: 592 --------VEASDKYHIMADG--LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYV 641
                      + +  +   G     +S+ IN L   D G++ C A   S   + +A   
Sbjct: 159 IDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQ 218

Query: 642 HVLMPKNYRKPRFVESL----KAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD-- 695
            +             S+            +  F C+        +      +     +  
Sbjct: 219 VLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGR 278

Query: 696 ----VYQLTGTSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLL 741
                    G+ S+          G Y C A +     E S     +   N         
Sbjct: 279 ILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNE-------- 330

Query: 742 LLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILK-- 799
                            +             +      + ++   +         ++   
Sbjct: 331 ------ESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSE 384

Query: 800 ----------------ETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPK 843
                              G   + ++ L   D   + C+   D     T       +  
Sbjct: 385 GWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTV-----EIKI 439

Query: 844 HYKKPKFLEELKAVLSEGGAVNLEC----KVIGVPQPTLKWFKDGRELKAGDIHK----- 894
              +P            G  + + C    K     +   KW   G +             
Sbjct: 440 IEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAF 499

Query: 895 -IISGEDGTCCL----------GIYTCEAHNCMGTTSSSAALL 926
                      L          G Y C          ++A  +
Sbjct: 500 VNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYV 542

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score =  112 bits (281), Expect = 7e-26
 Identities = 68/478 (14%), Positives = 137/478 (28%), Gaps = 65/478 (13%)

Query: 96  LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 155
           +NI ++ +DD GRY       S          V  +V   P  +       V +G    +
Sbjct: 77  VNIAQLSQDDSGRYKCGLGINSR----GLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTI 132

Query: 156 LVEIRS--PTEIK--CQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE----LNIRR 207
               ++    + K   +      +     +   +P +  R R ++  G  +    + I +
Sbjct: 133 NCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIR-LDIQGTGQLLFSVVINQ 191

Query: 208 VRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR 267
           +R  D G+Y   A ++S  +    +L V       P       D+   V     L  E+ 
Sbjct: 192 LRLSDAGQYLCQAGDDSNSNKKNADLQVLK-----PEPELVYEDLRGSVTFHCALGPEVA 246

Query: 268 SPTEIKCQFDLNNTIPFS-FRAQGDHPIFGNRF--RAINRDGRTELNIRRVRRDDGGRYS 324
           +  +  C+                  P F  R      ++DG   + I  +R++D GRY 
Sbjct: 247 NVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYL 306

Query: 325 VTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWY 384
             A ++          + +  V +     R    +    G+   +L          I ++
Sbjct: 307 CGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYW 366

Query: 385 RNDRKLEE---------NKIYRTQHDGNFYFID----------LSSVSLFDSGRWTCLAE 425
                 +              + Q++G    ++          L+ ++  D+G + CL  
Sbjct: 367 CLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTN 426

Query: 426 NAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVM----GIPTPQLIWY 481
                       +V +      P              T+ + C               W 
Sbjct: 427 GDTLWRT-----TVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWN 481

Query: 482 KDNKKIKAGD----------------IFALTANPKDPSSLGTYTCEAVNCMGAAFSTS 523
               +                     + +LT N    +  G Y C          + +
Sbjct: 482 NTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAA 539

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score =  101 bits (252), Expect = 3e-22
 Identities = 63/594 (10%), Positives = 153/594 (25%), Gaps = 93/594 (15%)

Query: 358 DIAVKVGTRARL---LVEIRSPTEIKIHWYRNDRKLEENKIYRTQ--------------- 399
           ++    G    +             + +W R   +     +  ++               
Sbjct: 9   EVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTN 68

Query: 400 -HDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAIL 458
             +   + ++++ +S  DSGR+ C                V +  +             +
Sbjct: 69  FPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLS----FDVSLEVSQGPGLLNDTKVYTV 124

Query: 459 TEQGTVSLECKVMGIPTPQLIW----------------------YKDNKKIKAGD----I 492
               TV++ C        +                         Y    ++        +
Sbjct: 125 DLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLL 184

Query: 493 FALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPI 552
           F++  N    S  G Y C+A +   +    +           D   +     +       
Sbjct: 185 FSVVINQLRLSDAGQYLCQAGDDSNSNKKNA-----------DLQVLKPEPELVYEDLRG 233

Query: 553 FIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGG-YSIE 611
            +     +  ++   A   C+         +     +       +  +      G +S+ 
Sbjct: 234 SVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVV 293

Query: 612 INYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFE 671
           I  L   D G + C A S   +++ S      L            ++   +     V+  
Sbjct: 294 ITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVA-GSSVAVL 352

Query: 672 CKVVGFPTPTLQWFKDNEELKPGDVYQL--TGTSSLGSYCCVAKNVMGKAESSTQLTIED 729
           C      + +++++   E  + G    L  +       Y      +      +  + +  
Sbjct: 353 CPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQ 412

Query: 730 IR-----------NHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSIS--- 775
           +            N  +     + +   +    ++   +  A + E  K           
Sbjct: 413 LTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSS 472

Query: 776 -PEPKVSWFRDDQQVVESDN------VKILKETLGVCHLKIHALEVADQAEWKCIATNDF 828
             +    W     Q + S +           E   +  L ++ +  AD+  + C      
Sbjct: 473 YEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGH 532

Query: 829 GQSITSCFLKLNV---PKHYKKPKFLEELKAVLSE----GGAVNLECKVIGVPQ 875
               T+  + + V        +   L +  A   E     G   +E K I  P+
Sbjct: 533 FYGETA-AVYVAVEERKAAGSRDVSLAKADAAPDEKVLDSGFREIENKAIQDPR 585

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 95.8 bits (237), Expect = 2e-20
 Identities = 73/563 (12%), Positives = 151/563 (26%), Gaps = 97/563 (17%)

Query: 2   GIPTPQLIWYKDNKKIK-------------------------AGDIFALTANPKDPSSLG 36
                +  W +   +                               F +          G
Sbjct: 29  VNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSG 88

Query: 37  TYTCEAVNCMG-AAFSTSRVIARGQQSFLDNDDVPFN----------------------- 72
            Y C         +F  S  +++G     D      +                       
Sbjct: 89  RYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLY 148

Query: 73  RAQGDHP---IFGNRFRAINRDGRT------------ELNIRRVRRDDGGRYSVTASNES 117
           +  G +P   I  + +   N  GR              + I ++R  D G+Y   A ++S
Sbjct: 149 KQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDS 208

Query: 118 GYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPF 177
             +    +L V       P       D+   V     L  E+ +  +  C+         
Sbjct: 209 NSNKKNADLQVLK-----PEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDV 263

Query: 178 S-FRAQGDHPIFGNRF--RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELS 234
                    P F  R      ++DG   + I  +R++D GRY   A ++          +
Sbjct: 264 VVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQA 323

Query: 235 VESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS--PTEIK--CQFDLNNTIPFSFRAQG 290
            +  V +     R    +    G+   +L          IK  C ++             
Sbjct: 324 WQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDS 383

Query: 291 D---HPIFGNRF--RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
           +      +  R        +G   + + ++   D G Y    + ++ + T   E+ +   
Sbjct: 384 EGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRT-TVEIKIIEG 442

Query: 346 VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLE------ENKIYRTQ 399
            P+          +   +        +  S  +    W     +         +K +   
Sbjct: 443 EPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNC 502

Query: 400 HDGNFYF-IDLSSVSLFDSGRWTCLAENAVGRSH-CSCELSVLVPKAYKAPFFTKELEAI 457
            + +    + L+ V+  D G + C  +         +  ++V   KA          +A 
Sbjct: 503 DENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKA-AGSRDVSLAKAD 561

Query: 458 ------LTEQGTVSLECKVMGIP 474
                 + + G   +E K +  P
Sbjct: 562 AAPDEKVLDSGFREIENKAIQDP 584

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 43.8 bits (102), Expect = 3e-04
 Identities = 28/216 (12%), Positives = 48/216 (22%), Gaps = 47/216 (21%)

Query: 772 VSISPEPKVSWFRDD--------------QQVVESDNVKIL-KETLGVCHLKIHALEVAD 816
            S++   +  W R                     +    +      G   + I  L   D
Sbjct: 27  TSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDD 86

Query: 817 QAEWKCIATND-FGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQ 875
              +KC    +  G S          P      K        +  G  V + C       
Sbjct: 87  SGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYT-----VDLGRTVTINCPFKTENA 141

Query: 876 PTLKWF--KDG-------------RELKAGDIHKIISGEDGTCCL-----------GIYT 909
              K    + G                  G I   I G                  G Y 
Sbjct: 142 QKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYL 201

Query: 910 CEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALI 945
           C+A +   +   +A L   + + ++   +       
Sbjct: 202 CQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTF 237

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  114 bits (286), Expect = 7e-29
 Identities = 48/203 (23%), Positives = 78/203 (38%), Gaps = 25/203 (12%)

Query: 548 GPA-----PIFIKEVENVKAKIGTSAILECQVLV-PPWPRSIYWY-NKEGVVEASDKYHI 600
           GP      P   +E   V+ K G   +L C      P   S  W  N+  V    DK   
Sbjct: 1   GPGSGYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRF 60

Query: 601 MADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP----KNYRKPRFVE 656
           ++   G  ++ I  +EA D G + C  +S S  K   + ++ ++              V 
Sbjct: 61  VSQTNG--NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVV 118

Query: 657 SLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL---------- 705
             K V    G  V+ EC  +G P P ++W K  E +        +G + L          
Sbjct: 119 QFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSG-AVLKIFNIQLEDE 177

Query: 706 GSYCCVAKNVMGKAESSTQLTIE 728
           G Y C A+N+ GK +   ++ ++
Sbjct: 178 GIYECEAENIRGKDKHQARIYVQ 200

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  113 bits (283), Expect = 1e-28
 Identities = 38/196 (19%), Positives = 70/196 (35%), Gaps = 25/196 (12%)

Query: 350 PAFIRRLHDIAVKVGTRARLL--VEIRSPTEIKIHWYRNDRKL---EENKIYRTQHDGNF 404
           P       ++ VK G    LL       P ++   W  N+  +    + + + +Q +GN 
Sbjct: 9   PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNL 68

Query: 405 YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPK-----AYKAPFFTKELEAILT 459
           Y    ++V   D G ++C   +         +   L+P               + + +  
Sbjct: 69  YI---ANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYA 125

Query: 460 EQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALT--------ANPKDPSSLGTYTC 510
             G  V+LEC  +G P P + W K  + + +    + +           +D    G Y C
Sbjct: 126 LMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDE---GIYEC 182

Query: 511 EAVNCMGAAFSTSRVI 526
           EA N  G     +R+ 
Sbjct: 183 EAENIRGKDKHQARIY 198

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  100 bits (250), Expect = 3e-24
 Identities = 37/195 (18%), Positives = 61/195 (31%), Gaps = 24/195 (12%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEP--KVSWFRDDQQV-VESDNVKILKETLGVC 805
           P   E     +    +                   W  ++  V +  D  + + +T G  
Sbjct: 9   PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG-- 66

Query: 806 HLKIHALEVADQAEWKCIATNDFGQSITSC-FLKLNVPKHYKK----PKFLEELK-AVLS 859
           +L I  +E +D+  + C  ++          F+ L               + + K     
Sbjct: 67  NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYAL 126

Query: 860 EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKI---------ISGEDGTCCLGIYTC 910
            G  V LEC  +G P P ++W K    + +               I  ED     GIY C
Sbjct: 127 MGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDE----GIYEC 182

Query: 911 EAHNCMGTTSSSAAL 925
           EA N  G     A +
Sbjct: 183 EAENIRGKDKHQARI 197

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 93.4 bits (232), Expect = 9e-22
 Identities = 24/205 (11%), Positives = 56/205 (27%), Gaps = 29/205 (14%)

Query: 649 YRKPRFVESLKAVMTDDG-LVSFECKVVGFPTP--TLQWFKDNEELKP---GDVYQLTGT 702
           Y  P   E    V   +G  +   C          + +W  +   +        +     
Sbjct: 6   YLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTN 65

Query: 703 SSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFI 752
            +L          G+Y C   +        ++          + +              +
Sbjct: 66  GNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPY--------PADIV 117

Query: 753 EGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHAL 812
              K   A + +          +P P + W +  + +  +  +           LKI  +
Sbjct: 118 VQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAV-----LKIFNI 172

Query: 813 EVADQAEWKCIATNDFGQSITSCFL 837
           ++ D+  ++C A N  G+      +
Sbjct: 173 QLEDEGIYECEAENIRGKDKHQARI 197

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 83.8 bits (207), Expect = 2e-18
 Identities = 39/210 (18%), Positives = 62/210 (29%), Gaps = 32/210 (15%)

Query: 243 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFR-AQGDHPIF---GNR 298
           P       ++ VK G    L           C    +     S+R    + P+F     R
Sbjct: 9   PFPPEERPEVRVKEGKGMVL----------LCDPPYHFPDDLSYRWLLNEFPVFITMDKR 58

Query: 299 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD------APAF 352
                 +G   L I  V   D G YS   S+ S   +   +      +P+          
Sbjct: 59  RFVSQTNGN--LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADI 116

Query: 353 IRRLHDIAVKVGTRARLLVEIR---SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL 409
           + +  D+   +G    L         P    I W +    +           G    I  
Sbjct: 117 VVQFKDVYALMGQNVTLECFALGNPVPD---IRWRKVLEPMPST--AEISTSGAVLKI-- 169

Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
            ++ L D G + C AEN  G+      + V
Sbjct: 170 FNIQLEDEGIYECEAENIRGKDKHQARIYV 199

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 74.2 bits (182), Expect = 5e-15
 Identities = 40/230 (17%), Positives = 66/230 (28%), Gaps = 58/230 (25%)

Query: 136 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFR-AQGDHPIF---GNR 191
           P       ++ VK G    L           C    +     S+R    + P+F     R
Sbjct: 9   PFPPEERPEVRVKEGKGMVL----------LCDPPYHFPDDLSYRWLLNEFPVFITMDKR 58

Query: 192 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD------APAF 245
                 +G   L I  V   D G YS   S+ S   +   +      +P+          
Sbjct: 59  RFVSQTNGN--LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADI 116

Query: 246 IRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG-----------DHPI 294
           + +  D+   +G    L          +C             A G             P+
Sbjct: 117 VVQFKDVYALMGQNVTL----------ECF------------ALGNPVPDIRWRKVLEPM 154

Query: 295 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
                  I+  G   L I  ++ +D G Y   A N  G    +  + V++
Sbjct: 155 PSTAE--ISTSGAV-LKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQA 201

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 68.0 bits (166), Expect = 5e-13
 Identities = 32/181 (17%), Positives = 54/181 (29%), Gaps = 47/181 (25%)

Query: 77  DHPIF---GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP 133
           + P+F     R      +G   L I  V   D G YS   S+ S   +   +      +P
Sbjct: 48  EFPVFITMDKRRFVSQTNGN--LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIP 105

Query: 134 D------APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG---- 183
           +          + +  D+   +G    L          +C             A G    
Sbjct: 106 ERTTKPYPADIVVQFKDVYALMGQNVTL----------ECF------------ALGNPVP 143

Query: 184 -------DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
                    P+       I+  G   L I  ++ +D G Y   A N  G    +  + V+
Sbjct: 144 DIRWRKVLEPMPSTAE--ISTSGAV-LKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200

Query: 237 S 237
           +
Sbjct: 201 A 201

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 16/96 (16%)

Query: 845 YKKPKFLEELKAV-LSEGGAVNLECKVIGVPQP--TLKWFKDGREL-KAGDIHKIISGED 900
           Y  P   EE   V + EG  + L C          + +W  +   +    D  + +S  +
Sbjct: 6   YLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTN 65

Query: 901 GTCCL----------GIYTCEAHNCMGTTSSSAALL 926
           G   L          G Y+C   +   T S  +  +
Sbjct: 66  GN--LYIANVEASDKGNYSCFVSSPSITKSVFSKFI 99

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 26/170 (15%), Positives = 43/170 (25%), Gaps = 44/170 (25%)

Query: 2   GIPTPQLI-WYKDNKKIKA---GDIFALTANPK------DPSSLGTYTCEAVNCMGAAFS 51
             P      W  +   +        F    N        + S  G Y+C   +       
Sbjct: 35  HFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSV 94

Query: 52  TSR-------------------VIARGQQSFLDNDDVPFN-RAQG-----------DHPI 80
            S+                   V+       L   +V     A G             P+
Sbjct: 95  FSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPM 154

Query: 81  FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 130
                  I+  G   L I  ++ +D G Y   A N  G    +  + V++
Sbjct: 155 PSTAE--ISTSGAV-LKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQA 201

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  117 bits (294), Expect = 3e-28
 Identities = 44/195 (22%), Positives = 69/195 (35%), Gaps = 24/195 (12%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKIL------KETL 802
           P  I+ LK+     N +          P P+++W R       ++  K L      K   
Sbjct: 2   PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60

Query: 803 GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLS-EG 861
           G   L I  ++++D   + C A +  G    S +L +        PKF+       S EG
Sbjct: 61  GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYA-----PKFISNQTIYYSWEG 115

Query: 862 GAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKI-ISGEDGTCCL----------GIYTC 910
             +N+ C V   P  ++ W +D   L A +   +          L          G Y C
Sbjct: 116 NPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNC 175

Query: 911 EAHNCMGTTSSSAAL 925
            A N +GT      L
Sbjct: 176 TATNHIGTRFQEYIL 190

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  116 bits (291), Expect = 9e-28
 Identities = 42/209 (20%), Positives = 66/209 (31%), Gaps = 39/209 (18%)

Query: 651 KPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD----------VYQLT 700
           +P  ++       ++G V+  C   G P P + W +  +     +          V    
Sbjct: 1   QPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60

Query: 701 GTSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPK 750
           G+SSL          G Y C A + +G  + S  L IE                   APK
Sbjct: 61  GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEY------------------APK 102

Query: 751 FIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLG-VCHLKI 809
           FI       +        +  V  +P   + W RD   +   +   +   + G    L+I
Sbjct: 103 FISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEI 162

Query: 810 HALEVADQAEWKCIATNDFGQSITSCFLK 838
                 D   + C ATN  G       L 
Sbjct: 163 APTSDNDFGRYNCTATNHIGTRFQEYILA 191

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  103 bits (259), Expect = 1e-23
 Identities = 44/219 (20%), Positives = 77/219 (35%), Gaps = 25/219 (11%)

Query: 136 PAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 193
           P  I+ L +       +  L+ +    P  EI  +  ++                  R  
Sbjct: 2   PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTE-----GDKSLDGRIE 55

Query: 194 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIA 253
              + G + L+I+ V+  D GRY   A++  G       L +E     AP FI       
Sbjct: 56  VKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE----YAPKFISNQTIYY 111

Query: 254 VKVGTRARLLVEIRS--PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELN 311
              G    +  +++S  P  I  + D    +P                +  +   +  L 
Sbjct: 112 SWEGNPINISCDVKSNPPASIHWRRD-KLVLPAKNTT---------NLKTYSTGRKMILE 161

Query: 312 IRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 350
           I     +D GRY+ TA+N  G    ++ L++   VP +P
Sbjct: 162 IAPTSDNDFGRYNCTATNHIGTRFQEYILALAD-VPSSP 199

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  103 bits (259), Expect = 1e-23
 Identities = 51/314 (16%), Positives = 98/314 (31%), Gaps = 49/314 (15%)

Query: 75  QGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 134
                    R     + G + L+I+ V+  D GRY   A++  G       L +E     
Sbjct: 44  TEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE----Y 99

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRS--PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
           AP FI          G    +  +++S  P  I  + D    +P                
Sbjct: 100 APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRD-KLVLPAKNTT---------NL 149

Query: 193 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDI 252
           +  +   +  L I     +D GRY+ TA+N  G    ++ L++   VP +P  + ++ ++
Sbjct: 150 KTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALAD-VPSSPYGV-KIIEL 207

Query: 253 AVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNI 312
                ++    V    P            I   ++               +   +T + +
Sbjct: 208 -----SQTTAKVSFNKP-----DSHGGVPI-HHYQVDVKEVASEIWKIVRSHGVQTMVVL 256

Query: 313 RRVRRDDGGRYSVTASNESG---YSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 369
             +  +      V A N  G   YS  +   ++  + P  P                  +
Sbjct: 257 NNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPP-----------------SI 299

Query: 370 LVEIRSPTEIKIHW 383
             +  S    K+  
Sbjct: 300 HGQPSSGKSFKLSI 313

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  103 bits (258), Expect = 1e-23
 Identities = 58/306 (18%), Positives = 100/306 (32%), Gaps = 59/306 (19%)

Query: 554 IKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-------NKEGVVEASDKYHIMADGLG 606
           I +++N          L C     P P  I W          EG      +  +      
Sbjct: 4   IIQLKNETTYENGQVTLVCDAEGEPIP-EITWKRAVDGFTFTEGDKSLDGRIEVKGQHGS 62

Query: 607 GYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG 666
             S+ I  ++  D G + C A S  G  Q  + Y+ +        P+F+ +     + +G
Sbjct: 63  S-SLHIKDVKLSDSGRYDCEAASRIGGHQ-KSMYLDIEYA-----PKFISNQTIYYSWEG 115

Query: 667 -LVSFECKVVGFPTPTLQWFKDNEELKPGD-----VYQLTGTSSL----------GSYCC 710
             ++  C V   P  ++ W +D   L   +      Y       L          G Y C
Sbjct: 116 NPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNC 175

Query: 711 VAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTV 770
            A N +G       L + D+                  P    G+K     + E  + T 
Sbjct: 176 TATNHIGTRFQEYILALADV------------------PSSPYGVK-----IIELSQTTA 212

Query: 771 QVSISPEP-----KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT 825
           +VS +         +  ++ D + V S+  KI++       + ++ LE     E +  A 
Sbjct: 213 KVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAV 272

Query: 826 NDFGQS 831
           N  GQ 
Sbjct: 273 NGKGQG 278

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  101 bits (254), Expect = 4e-23
 Identities = 44/207 (21%), Positives = 76/207 (36%), Gaps = 15/207 (7%)

Query: 243 PAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 300
           P  I+ L +       +  L+ +    P  EI  +  ++                  R  
Sbjct: 2   PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTE-----GDKSLDGRIE 55

Query: 301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIA 360
              + G + L+I+ V+  D GRY   A++  G       L +E     AP FI       
Sbjct: 56  VKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE----YAPKFISNQTIYY 111

Query: 361 VKVGTRARLLVEIRSPTEIKIHWYRNDRKL--EENKIYRTQHDGNFYFIDLSSVSLFDSG 418
              G    +  +++S     IHW R+   L  +     +T   G    ++++  S  D G
Sbjct: 112 SWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFG 171

Query: 419 RWTCLAENAVGRSHCSCELSVL-VPKA 444
           R+ C A N +G       L++  VP +
Sbjct: 172 RYNCTATNHIGTRFQEYILALADVPSS 198

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  101 bits (254), Expect = 5e-23
 Identities = 55/316 (17%), Positives = 98/316 (31%), Gaps = 46/316 (14%)

Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLE-------ENKIYRTQHDG 402
           P  I+ L +       +  L+ +       +I W R              +     +   
Sbjct: 2   PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60

Query: 403 NFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG 462
               + +  V L DSGR+ C A + +G    S  L +        P F        + +G
Sbjct: 61  GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYA-----PKFISNQTIYYSWEG 115

Query: 463 -TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL-----------GTYTC 510
             +++ C V   P   + W +D   + A +   L         +           G Y C
Sbjct: 116 NPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNC 175

Query: 511 EAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAIL 570
            A N +G  F    +            DVP     P G       ++  +     T+A +
Sbjct: 176 TATNHIGTRFQEYILALA---------DVPS---SPYGV------KIIELSQ---TTAKV 214

Query: 571 ECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSS 630
                       I+ Y  +    AS+ + I+        + +N LE     E +  A + 
Sbjct: 215 SFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNG 274

Query: 631 SGVKQFSAAYVHVLMP 646
            G   +S   +   +P
Sbjct: 275 KGQGDYSKIEIFQTLP 290

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 72.5 bits (178), Expect = 2e-13
 Identities = 39/285 (13%), Positives = 84/285 (29%), Gaps = 56/285 (19%)

Query: 2   GIPTPQLIWYKDNKKI----------------KAGDIFALTANPKDPSSLGTYTCEAVNC 45
           G P P++ W +                           +L       S  G Y CEA + 
Sbjct: 26  GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASR 85

Query: 46  MGAAFSTSRVI---------ARGQQSFLDNDDVPFN-RAQGDHPIF-------------- 81
           +G    +  +           +      + + +  +   + + P                
Sbjct: 86  IGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKN 145

Query: 82  GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR 141
               +  +   +  L I     +D GRY+ TA+N  G    ++ L++   VP +P  + +
Sbjct: 146 TTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALAD-VPSSPYGV-K 203

Query: 142 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRT 201
           + ++     ++    V    P            I   ++               +   +T
Sbjct: 204 IIEL-----SQTTAKVSFNKP-----DSHGGVPI-HHYQVDVKEVASEIWKIVRSHGVQT 252

Query: 202 ELNIRRVRRDDGGRYSVTASNESG---YSTAKFELSVESQVPDAP 243
            + +  +  +      V A N  G   YS  +   ++  + P  P
Sbjct: 253 MVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPP 297

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 64.8 bits (158), Expect = 5e-11
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 16/95 (16%)

Query: 847 KPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGREL------KAGDIHKIISGED 900
           +P  ++       E G V L C   G P P + W +           K+ D    + G+ 
Sbjct: 1   QPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60

Query: 901 GTCCL----------GIYTCEAHNCMGTTSSSAAL 925
           G+  L          G Y CEA + +G    S  L
Sbjct: 61  GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL 95

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  108 bits (272), Expect = 7e-27
 Identities = 50/229 (21%), Positives = 81/229 (35%), Gaps = 46/229 (20%)

Query: 447 APFFTKELE-AILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD-------------- 491
            P   +     I+++    +L CK  G PTP + WYK  ++++                 
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 492 --IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGP 549
                +    K     G Y C A N +G A S                     SL     
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHD------------------ASLEVAIL 110

Query: 550 APIFIKEVENVKAKIGTSAILECQVLV-PPWPRSIYWYNKEGVVEASDKYHIMADGLGGY 608
              F +   +V   +G  A++ECQ     P P +I W      ++  D+   +  G    
Sbjct: 111 RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEP-TISWKKDGSPLDDKDERITIRGG---- 165

Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVES 657
            + I Y    D G++ CV T+  G ++   A + VL       P FV++
Sbjct: 166 KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLER-----PSFVKA 209

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  107 bits (270), Expect = 1e-26
 Identities = 43/203 (21%), Positives = 73/203 (35%), Gaps = 25/203 (12%)

Query: 742 LLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDN-----VK 796
           L   +  P+ +E       +  E      +    P P + W++  ++V    +       
Sbjct: 3   LRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM 62

Query: 797 ILKE-TLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK 855
           +L   +L    +        D+  + C+A N  G++++     L V     +  F +   
Sbjct: 63  LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDA-SLEV--AILRDDFRQNPS 119

Query: 856 AVL-SEGGAVNLECKVI-GVPQPTLKWFKDGRELKAGDIHKIISG----------EDGTC 903
            V+ + G    +EC+   G P+PT+ W KDG  L   D    I G           D   
Sbjct: 120 DVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDA-- 177

Query: 904 CLGIYTCEAHNCMGTTSSSAALL 926
             G Y C   N +G   S  A L
Sbjct: 178 --GKYVCVGTNMVGERESEVAEL 198

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  106 bits (266), Expect = 4e-26
 Identities = 52/225 (23%), Positives = 82/225 (36%), Gaps = 48/225 (21%)

Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDV-----YQLTGTSS 704
            PR VE    ++   G   +  CK  G PTPT++W+K  E ++           L  + S
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 705 L---------------GSYCCVAKNVMGKAESST-QLTIEDIRNHLSEEDKLLLLTNNKA 748
           L               G Y CVA+N +G+A S    L +  +R                 
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILR----------------- 111

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
             F +        V E      Q     PEP +SW +D   + + D    ++       L
Sbjct: 112 DDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG----KL 167

Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLE 852
            I     +D  ++ C+ TN  G    S   +L V    ++P F++
Sbjct: 168 MITYTRKSDAGKYVCVGTNMVG-ERESEVAELTV---LERPSFVK 208

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 83.7 bits (207), Expect = 3e-18
 Identities = 49/224 (21%), Positives = 72/224 (32%), Gaps = 29/224 (12%)

Query: 238 QVPDAPAFIRRLHDIAVKVGTRARL--LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF 295
           Q    P  +    D+ V  G  A L    E R    I+        +         H   
Sbjct: 5   QEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKG-GERVETDKDDPRSH--- 60

Query: 296 GNRFRAINRDG---RTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQVPDAPA 351
               R +   G      +   R  R D G Y   A N  G + +    L V         
Sbjct: 61  ----RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL---RDD 113

Query: 352 FIRRLHDIAVKVGTRARLLVEIRS--PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL 409
           F +   D+ V VG  A +  +     P E  I W ++   L++     T   G      +
Sbjct: 114 FRQNPSDVMVAVGEPAVMECQPPRGHP-EPTISWKKDGSPLDDKDERITIRGGKLM---I 169

Query: 410 SSVSLFDSGRWTCLAENAVGRSHCS-CELSVLVPKAYKAPFFTK 452
           +     D+G++ C+  N VG       EL+VL       P F K
Sbjct: 170 TYTRKSDAGKYVCVGTNMVGERESEVAELTVLER-----PSFVK 208

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 68.7 bits (168), Expect = 3e-13
 Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 24/123 (19%)

Query: 847 KPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGD-------------- 891
            P+ +E     ++S+G    L CK  G P PT++W+K G  ++                 
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 892 --IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALL-------GFEDKSQIEKAEEGKK 942
               +I+ G       G+Y C A N +G   S  A L        F           G+ 
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEP 128

Query: 943 ALI 945
           A++
Sbjct: 129 AVM 131

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 67.1 bits (164), Expect = 1e-12
 Identities = 48/250 (19%), Positives = 76/250 (30%), Gaps = 76/250 (30%)

Query: 1   MGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQ 60
            G PTP + WYK  +++                                  T +   R  
Sbjct: 34  EGRPTPTIEWYKGGERV---------------------------------ETDKDDPRSH 60

Query: 61  QSFLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS 120
           +  L +  + F R                      +   R  R D G Y   A N  G +
Sbjct: 61  RMLLPSGSLFFLR----------------------IVHGRKSRPDEGVYVCVARNYLGEA 98

Query: 121 -TAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSF 179
            +    L V         F +   D+ V VG  A +          +CQ    +  P   
Sbjct: 99  VSHDASLEVAIL---RDDFRQNPSDVMVAVGEPAVM----------ECQPPRGHPEPTIS 145

Query: 180 RAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKF-ELSVESQ 238
             +   P+     R   R G  +L I   R+ D G+Y    +N  G   ++  EL+V   
Sbjct: 146 WKKDGSPLDDKDERITIRGG--KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTV--L 201

Query: 239 VPDAPAFIRR 248
               P+F++ 
Sbjct: 202 ER--PSFVKA 209

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 66.8 bits (163), Expect = 2e-12
 Identities = 49/232 (21%), Positives = 74/232 (31%), Gaps = 34/232 (14%)

Query: 131 QVPDAPAFIRRLHDIAVKVGTRARL--LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF 188
           Q    P  +    D+ V  G  A L    E R    I+        +         H   
Sbjct: 5   QEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKG-GERVETDKDDPRSH--- 60

Query: 189 GNRFRAINRDG---RTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQVPDAPA 244
               R +   G      +   R  R D G Y   A N  G + +    L V         
Sbjct: 61  ----RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL---RDD 113

Query: 245 FIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINR 304
           F +   D+ V VG  A +          +CQ    +  P     +   P+     R   R
Sbjct: 114 FRQNPSDVMVAVGEPAVM----------ECQPPRGHPEPTISWKKDGSPLDDKDERITIR 163

Query: 305 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKF-ELSVESQVPDAPAFIRR 355
            G  +L I   R+ D G+Y    +N  G   ++  EL+V       P+F++ 
Sbjct: 164 GG--KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTV--LER--PSFVKA 209

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  108 bits (270), Expect = 7e-27
 Identities = 28/196 (14%), Positives = 58/196 (29%), Gaps = 30/196 (15%)

Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVS--WFRDDQQVVESDNVKILKETLGVC 805
            P+ +   +               ++ S    +   W ++  ++  +             
Sbjct: 3   EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKN------ASNM 56

Query: 806 HLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAV 864
             +I+     D  E+ C+          +  +++        P      ++   +EG   
Sbjct: 57  EYRINKPRAEDSGEYHCVYHFV-SAPKANATIEVKAA-----PDITGHKRSENKNEGQDA 110

Query: 865 NLECKVIGVPQPTLKWFKDGRELKAGDIHKI----ISGEDGTCCL-----------GIYT 909
            + CK +G P P   W K    +     +      I  ++    L           G Y 
Sbjct: 111 MMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYE 170

Query: 910 CEAHNCMGTTSSSAAL 925
           C A N +G+ S S  L
Sbjct: 171 CNATNSIGSASVSTVL 186

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  107 bits (268), Expect = 1e-26
 Identities = 37/199 (18%), Positives = 62/199 (31%), Gaps = 31/199 (15%)

Query: 345 QVPDAPAFIRRLHDIAVKVGTRARL--LVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDG 402
           Q    P  +     I         L   +   S T +  +W +N  +L      R     
Sbjct: 1   QNE--PRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT---RKNASN 55

Query: 403 NFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAI-LTEQ 461
             Y I  +     DSG + C+  + V     +  + V        P  T    +    E 
Sbjct: 56  MEYRI--NKPRAEDSGEYHCVY-HFVSAPKANATIEVKAA-----PDITGHKRSENKNEG 107

Query: 462 GTVSLECKVMGIPTPQLIWYKDNKKIKA--------------GDIFALT-ANPKDPSSLG 506
               + CK +G P P+ +W K    +                 +   L   N +     G
Sbjct: 108 QDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPG 167

Query: 507 TYTCEAVNCMGAAFSTSRV 525
            Y C A N +G+A  ++ +
Sbjct: 168 EYECNATNSIGSASVSTVL 186

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  106 bits (267), Expect = 1e-26
 Identities = 42/199 (21%), Positives = 62/199 (31%), Gaps = 34/199 (17%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPR-SIYWYNKEGVVEASDKYHIMADGLGGY 608
            P  +   E +         L+C +          YW  K GV   + + +         
Sbjct: 3   EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWT-KNGVELTATRKN-----ASNM 56

Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-L 667
              IN   A D GE+ CV    S  K  + A + V        P      ++   ++G  
Sbjct: 57  EYRINKPRAEDSGEYHCVYHFVSAPK--ANATIEVKAA-----PDITGHKRSENKNEGQD 109

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD--------VYQLTGTSSL-----------GSY 708
               CK VG+P P   W K    +            +      + L           G Y
Sbjct: 110 AMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEY 169

Query: 709 CCVAKNVMGKAESSTQLTI 727
            C A N +G A  ST L +
Sbjct: 170 ECNATNSIGSASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  106 bits (265), Expect = 3e-26
 Identities = 37/207 (17%), Positives = 67/207 (32%), Gaps = 35/207 (16%)

Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTP--TLQWFKDNEELKPGDVYQLTGT----- 702
           +PR V S + ++ D    V+ +C +           W K+  EL                
Sbjct: 3   EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINK 62

Query: 703 ---SSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQ 759
                 G Y CV   V    +++  + ++                   AP      +S  
Sbjct: 63  PRAEDSGEYHCVYHFV-SAPKANATIEVKA------------------APDITGHKRSEN 103

Query: 760 ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI----LKETLGVCHLKIHALEVA 815
               ++     +    P P+  W + +  V E  +       +        L I  L++ 
Sbjct: 104 KNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQIT 163

Query: 816 -DQAEWKCIATNDFGQSITSCFLKLNV 841
            D  E++C ATN  G +  S  L++ V
Sbjct: 164 EDPGEYECNATNSIGSASVSTVLRVRV 190

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 89.5 bits (222), Expect = 2e-20
 Identities = 32/211 (15%), Positives = 62/211 (29%), Gaps = 28/211 (13%)

Query: 238 QVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFR-AQGDHPIFG 296
           Q    P  +     I         L          +C    ++         +    +  
Sbjct: 1   QNE--PRIVTSEEVIIRDSLLPVTL----------QCNLTSSSHTLMYSYWTKNGVELTA 48

Query: 297 NRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRL 356
            R          E  I + R +D G Y       S    A   + V++    AP      
Sbjct: 49  TR----KNASNMEYRINKPRAEDSGEYHCVYHFVSAPK-ANATIEVKA----APDITGHK 99

Query: 357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI-----YRTQHDGNFYFIDLSS 411
                  G  A +  +       +  W + +  + E        +   +  N+  +++ +
Sbjct: 100 RSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVN 159

Query: 412 VSLF-DSGRWTCLAENAVGRSHCSCELSVLV 441
           + +  D G + C A N++G +  S  L V V
Sbjct: 160 LQITEDPGEYECNATNSIGSASVSTVLRVRV 190

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 77.2 bits (190), Expect = 3e-16
 Identities = 34/150 (22%), Positives = 51/150 (34%), Gaps = 15/150 (10%)

Query: 89  NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVK 148
                 E  I + R +D G Y       S    A   + V++    AP            
Sbjct: 51  KNASNMEYRINKPRAEDSGEYHCVYHFVSAPK-ANATIEVKA----APDITGHKRSENKN 105

Query: 149 VGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIR 206
            G  A +  +    P  E   +   N        + G       RF  IN++  TELNI 
Sbjct: 106 EGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSG-------RFFIINKENYTELNIV 158

Query: 207 RVR-RDDGGRYSVTASNESGYSTAKFELSV 235
            ++  +D G Y   A+N  G ++    L V
Sbjct: 159 NLQITEDPGEYECNATNSIGSASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 58.3 bits (141), Expect = 8e-10
 Identities = 29/159 (18%), Positives = 52/159 (32%), Gaps = 33/159 (20%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFA----LTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIA 57
                   W K+  ++ A    A       N       G Y C   + + A  + + +  
Sbjct: 31  SHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVY-HFVSAPKANATIEV 89

Query: 58  RGQQSFL---------DNDDVPFN-RAQG-----------DHPIF------GNRFRAINR 90
           +               +  D     ++ G           ++ +F        RF  IN+
Sbjct: 90  KAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINK 149

Query: 91  DGRTELNIRRVR-RDDGGRYSVTASNESGYSTAKFELSV 128
           +  TELNI  ++  +D G Y   A+N  G ++    L V
Sbjct: 150 ENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  111 bits (278), Expect = 1e-26
 Identities = 50/333 (15%), Positives = 95/333 (28%), Gaps = 49/333 (14%)

Query: 226 YSTAKFELSVESQVPDAPAFI-RRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPF 284
           ++  +  L  +      P+ +     +    +G           P   KC    ++ +  
Sbjct: 12  FNKMRDTLPAKDSKWLNPSCMFGGTMNDMAALG----------EPFSAKCPPIEDSLLSH 61

Query: 285 SFRAQGDHPIFGNRFRAINRDGRTE-----LNIRRVRR-DDGGRYSVTASNESGYSTAKF 338
            +  + D+ +   +     R          L I      D   RY  T + ++G      
Sbjct: 62  RYNDK-DNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQG- 119

Query: 339 ELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS-PTEIKIHWYRNDRKLEENKIYR 397
              V S +   P+ I   +++         L   I        I WY+N+++L  +    
Sbjct: 120 --IVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKY 177

Query: 398 TQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV-----PKAYKAPFFTK 452
           +Q   N       +  L DSGR+ C       R      +S        P          
Sbjct: 178 SQSGQNLII---HNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLIL 234

Query: 453 ELEAILTEQGTVSLECKVMGIPTPQLI----WYKDNKKIKAGDIFALTANPKDP----SS 504
           + +  +T     ++ C  +            W   +  I   D    +          ++
Sbjct: 235 DPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEAT 294

Query: 505 L-----------GTYTCEAVNCMGAAFSTSRVI 526
           L            TYTC   N       T+ V+
Sbjct: 295 LYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVV 327

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  104 bits (260), Expect = 3e-24
 Identities = 36/301 (11%), Positives = 71/301 (23%), Gaps = 64/301 (21%)

Query: 668 VSFECKVVG---------FPTPTLQWFKDNEELKPGDVYQLTGT---------SSLGSYC 709
            S +C  +               + W K  +  +P +     G           S   Y 
Sbjct: 47  FSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYL 106

Query: 710 CVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFT 769
           C      G                       +     K P  I                 
Sbjct: 107 CTVTTKNGDCVQGI-----------------VRSHIRKPPSCIPETYELGTHDKYGIDLY 149

Query: 770 VQV-SISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDF 828
             +        ++W++++Q+++        K +    +L IH  E+ D   + C    D 
Sbjct: 150 CGILYAKHYNNITWYKNNQELIIDGT----KYSQSGQNLIIHNPELEDSGRYDCYVHYDD 205

Query: 829 GQSITSCFLKLNV-----PKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQP----TLK 879
            +      +         P    + K + + K  ++ G   N+ C  +          + 
Sbjct: 206 VRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLID 265

Query: 880 WFKDGRELKAGDIHKIISGEDGTCCL---------------GIYTCEAHNCMGTTSSSAA 924
           W      +   D                               YTC  HN     + +  
Sbjct: 266 WENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTT 325

Query: 925 L 925
           +
Sbjct: 326 V 326

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  104 bits (259), Expect = 3e-24
 Identities = 43/328 (13%), Positives = 87/328 (26%), Gaps = 41/328 (12%)

Query: 537 DDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASD 596
           D +P        P+ +F     N  A +G     +C   +     S  + +K+ VV    
Sbjct: 17  DTLPAKDSKWLNPSCMFGGT-MNDMAALGEPFSAKCPP-IEDSLLSHRYNDKDNVVNWEK 74

Query: 597 KYHIMADG---LGGYSIEINYLEAVDDGEW-KCVATSSSGVKQFSAAYVHVLMPKNYRKP 652
                      +    + I    + D      C  T+ +G         H+  P     P
Sbjct: 75  IGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKP-----P 129

Query: 653 RFVESLKAVMTDDGL-VSFECKVV-GFPTPTLQWFKDNEELKPGDVYQLTGTSSL----- 705
             +     + T D   +   C ++       + W+K+N+EL            +L     
Sbjct: 130 SCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNP 189

Query: 706 -----GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQA 760
                G Y C       + ++   ++             L ++ +      +        
Sbjct: 190 ELEDSGRYDCYVHYDDVRIKNDIVVSR---------CKILTVIPSQDHRFKLILDPKINV 240

Query: 761 TVNEEFKFTVQVSISPEPK----VSWFRDDQQVVESDNVKILKETLGVC----HLKIHAL 812
           T+ E    T     +        + W      ++  D       T         L    +
Sbjct: 241 TIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENV 300

Query: 813 EVADQ-AEWKCIATNDFGQSITSCFLKL 839
                   + C   N +     +  + L
Sbjct: 301 TEEYIGNTYTCRGHNYYFDKTLTTTVVL 328

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  102 bits (254), Expect = 2e-23
 Identities = 45/327 (13%), Positives = 84/327 (25%), Gaps = 70/327 (21%)

Query: 446 KAPFFTKELEAILTEQGTVSLECKVMG---------IPTPQLIWYKD-------NKKIKA 489
            +  F   +  +       S +C  +               + W K        N+++K 
Sbjct: 29  PSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKN 88

Query: 490 GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGP 549
           GD++       D  S   Y C      G                          +  P  
Sbjct: 89  GDLWIANYTSND--SHRRYLCTVTTKNGDCVQGIVRS----------------HIRKP-- 128

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
            P  I E   +         L C +L      +I WY K       D          G +
Sbjct: 129 -PSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWY-KNNQELIIDGTKYS---QSGQN 183

Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSA-----AYVHVLMPKNYRKPRFVESLKAVMTD 664
           + I+  E  D G + C         +          + V+  +++R    ++    V   
Sbjct: 184 LIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIG 243

Query: 665 DGLVSFECKVVGFPTP----TLQWFKDNEELKPGDVYQLT--------GTSSL------- 705
           +   +  C  V          + W   +  +   D    +          ++L       
Sbjct: 244 EP-ANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTE 302

Query: 706 ----GSYCCVAKNVMGKAESSTQLTIE 728
                +Y C   N       +T + +E
Sbjct: 303 EYIGNTYTCRGHNYYFDKTLTTTVVLE 329

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 88.0 bits (217), Expect = 9e-19
 Identities = 43/346 (12%), Positives = 89/346 (25%), Gaps = 54/346 (15%)

Query: 119 YSTAKFELSVESQVPDAPAFI-RRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPF 177
           ++  +  L  +      P+ +     +    +G           P   KC    ++ +  
Sbjct: 12  FNKMRDTLPAKDSKWLNPSCMFGGTMNDMAALG----------EPFSAKCPPIEDSLLSH 61

Query: 178 SFRAQGDHPIFGNRFRAINRDGRTE-----LNIRRVRR-DDGGRYSVTASNESGYSTAKF 231
            +  + D+ +   +     R          L I      D   RY  T + ++G      
Sbjct: 62  RYNDK-DNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQG- 119

Query: 232 ELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRA 288
              V S +   P+ I   +++         L   I        I    +           
Sbjct: 120 --IVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKN----------- 166

Query: 289 QGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV-- 346
             +  +  +  +         L I     +D GRY      +         +S    +  
Sbjct: 167 --NQELIIDGTKYSQSGQN--LIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTV 222

Query: 347 ---PDAPAFIRRLHDIAVKVGTRARLLVEIRS----PTEIKIHWYRNDRKLE--ENKIYR 397
               D    +     I V +G  A +     S      ++ I W      +   +  +Y 
Sbjct: 223 IPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYS 282

Query: 398 TQHDGNFYFID---LSSVSLFDSGRW-TCLAENAVGRSHCSCELSV 439
                           +V+    G   TC   N       +  + +
Sbjct: 283 ILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 81.4 bits (200), Expect = 1e-16
 Identities = 38/264 (14%), Positives = 63/264 (23%), Gaps = 41/264 (15%)

Query: 96  LNIRRVRR-DDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRAR 154
           L I      D   RY  T + ++G         V S +   P+ I   +++         
Sbjct: 91  LWIANYTSNDSHRRYLCTVTTKNGDCVQG---IVRSHIRKPPSCIPETYELGTHDKYGID 147

Query: 155 LLVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRD 211
           L   I        I    +             +  +  +  +         L I     +
Sbjct: 148 LYCGILYAKHYNNITWYKN-------------NQELIIDGTKYSQSGQN--LIIHNPELE 192

Query: 212 DGGRYSVTASNESGYSTAKFELSVESQV-----PDAPAFIRRLHDIAVKVGTRARLLVEI 266
           D GRY      +         +S    +      D    +     I V +G  A +    
Sbjct: 193 DSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTA 252

Query: 267 R------SPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDD- 319
                      I  +      I   F         G    A        L    V  +  
Sbjct: 253 VSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEAT-------LYFENVTEEYI 305

Query: 320 GGRYSVTASNESGYSTAKFELSVE 343
           G  Y+    N     T    + +E
Sbjct: 306 GNTYTCRGHNYYFDKTLTTTVVLE 329

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 74.1 bits (181), Expect = 4e-14
 Identities = 36/220 (16%), Positives = 67/220 (30%), Gaps = 40/220 (18%)

Query: 728 EDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFT---------VQVSISPEP 778
             +R+ L  +D   L   N +  F  G  +  A + E F                   + 
Sbjct: 13  NKMRDTLPAKDSKWL---NPSCMFG-GTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDN 68

Query: 779 KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVAD-QAEWKCIATNDFGQSITSCFL 837
            V+W +  +      N ++    L      I      D    + C  T   G  +    +
Sbjct: 69  VVNWEKIGKTR-RPLNRRVKNGDL-----WIANYTSNDSHRRYLCTVTTKNGDCVQG-IV 121

Query: 838 KLNVPKHYKKPKFLEELKAV-LSEGGAVNLECKVI-GVPQPTLKWFKDGRELKAGDIHKI 895
           + ++    K P  + E   +   +   ++L C ++       + W+K+ +EL        
Sbjct: 122 RSHI---RKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYS 178

Query: 896 ISG----------EDGTCCLGIYTCEAHNCMGTTSSSAAL 925
            SG          ED     G Y C  H       +   +
Sbjct: 179 QSGQNLIIHNPELEDS----GRYDCYVHYDDVRIKNDIVV 214

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 68.7 bits (167), Expect = 2e-12
 Identities = 35/277 (12%), Positives = 58/277 (20%), Gaps = 53/277 (19%)

Query: 2   GIPTPQLIWYKD-------NKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSR 54
                 + W K        N+++K GD++       D  S   Y C      G       
Sbjct: 64  NDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSND--SHRRYLCTVTTKNGDCVQGIV 121

Query: 55  VIARGQQSFLDNDDVPFNRAQGD-----------------------HPIFGNRFRAINRD 91
                +      +                                   +  +  +     
Sbjct: 122 RSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSG 181

Query: 92  GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV-----PDAPAFIRRLHDIA 146
               L I     +D GRY      +         +S    +      D    +     I 
Sbjct: 182 QN--LIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKIN 239

Query: 147 VKVGTRARLLVEIR------SPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGR 200
           V +G  A +               I  +      I   F         G    A      
Sbjct: 240 VTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEAT----- 294

Query: 201 TELNIRRVRRDD-GGRYSVTASNESGYSTAKFELSVE 236
             L    V  +  G  Y+    N     T    + +E
Sbjct: 295 --LYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 44.8 bits (105), Expect = 9e-05
 Identities = 18/182 (9%), Positives = 45/182 (24%), Gaps = 37/182 (20%)

Query: 824 ATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGV---------P 874
             N    ++ +   K   P       F   +  + + G   + +C  I            
Sbjct: 11  FFNKMRDTLPAKDSKWLNPS----CMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDK 66

Query: 875 QPTLKWFKDGRELKAGD---------IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
              + W K G+  +  +         I    S +        Y C      G        
Sbjct: 67  DNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSH----RRYLCTVTTKNGDCVQGIVR 122

Query: 926 LGFEDKSQIEKAEEGKKALIVKDPSLSTIQEEGTSEIYDTPMASIEEREISFSFDGKEVS 985
                               + +       ++   ++Y   + +     I++  + +E+ 
Sbjct: 123 SHIRKPPS-----------CIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELI 171

Query: 986 VS 987
           + 
Sbjct: 172 ID 173

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score =  107 bits (269), Expect = 5e-26
 Identities = 44/278 (15%), Positives = 74/278 (26%), Gaps = 58/278 (20%)

Query: 668 VSFECKVVG-FPTP--TLQWFKDNEELKP-----GDVYQLTGTSSL-------GSYCCVA 712
            +  C + G FP     +     ++ L P      D +    + S+           C  
Sbjct: 21  GTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAV 80

Query: 713 KNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQV 772
                  E+   +TI                     P     L   + +   E     + 
Sbjct: 81  ILGNQSQETLQTVTI------------------YSFPAPNVILTKPEVSEGTEVTVKCEA 122

Query: 773 SISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSI 832
              P  KV+      Q +                L + A    +   + C AT +    +
Sbjct: 123 H--PRAKVTLNGVPAQPLGPRA-----------QLLLKATPEDNGRSFSCSATLEVAGQL 169

Query: 833 T--SCFLKLNVPKHYKKPKFLEELK---AVLSEGGAVNLECKVIGVPQPTLKWFKDGREL 887
              +   +L V   Y  P+  E          E       C+  G P P LK  KDG   
Sbjct: 170 IHKNQTRELRV--LYG-PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 226

Query: 888 KAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
                   ++ +      G Y C A +  G  +    +
Sbjct: 227 LPIGESVTVTRDLE----GTYLCRARSTQGEVTREVTV 260

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 91.7 bits (227), Expect = 2e-20
 Identities = 36/291 (12%), Positives = 81/291 (27%), Gaps = 43/291 (14%)

Query: 156 LVEIRSPTEIKCQFDLNNTIPFS--FRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDG 213
           ++E+ +   + C  D    +  +    A GD  +        +              +  
Sbjct: 14  VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGT 73

Query: 214 GRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIK 273
            R +      +        +++ S     PA    L    V  GT   +          K
Sbjct: 74  QRLTCAVILGNQSQETLQTVTIYS----FPAPNVILTKPEVSEGTEVTV----------K 119

Query: 274 CQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGY 333
           C+   +     +       P+            R +L ++    D+G  +S +A+ E   
Sbjct: 120 CEA--HPRAKVTLNGVPAQPL----------GPRAQLLLKATPEDNGRSFSCSATLEVAG 167

Query: 334 STAKFELSVESQVPDAPAFIRRLH--DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLE 391
                  + E +V   P    R    +      ++   + +       ++   ++     
Sbjct: 168 QLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL 227

Query: 392 ENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
                           +  +V+    G + C A +  G       ++VL P
Sbjct: 228 PIG-------------ESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 265

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 88.6 bits (219), Expect = 2e-19
 Identities = 35/290 (12%), Positives = 77/290 (26%), Gaps = 59/290 (20%)

Query: 458 LTEQGT-VSLECKVMGI---PTPQLIWYKDNKKIKA-----GD----IFALTANPKDPSS 504
           + E  T  ++ C + G+      Q+     ++++        D      +++   +D   
Sbjct: 14  VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAED-EG 72

Query: 505 LGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKI 564
               TC  +    +  +   V                         P     +   +   
Sbjct: 73  TQRLTCAVILGNQSQETLQTVTIYS--------------------FPAPNVILTKPEVSE 112

Query: 565 GTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWK 624
           GT   ++C+         +                          + +      +   + 
Sbjct: 113 GTEVTVKCEAHPRA---KVTLNGVPAQPLG-----------PRAQLLLKATPEDNGRSFS 158

Query: 625 CVAT---SSSGVKQFSAAYVHVLMPKNYRKPRFVESLK---AVMTDDGLVSFECKVVGFP 678
           C AT   +   + +     + VL       PR  E          ++   +  C+  G P
Sbjct: 159 CSATLEVAGQLIHKNQTRELRVLYG-----PRLDERDCPGNWTWPENSQQTPMCQAWGNP 213

Query: 679 TPTLQWFKDNEELKPGDVYQLTGTSSLGSYCCVAKNVMGKAESSTQLTIE 728
            P L+  KD     P            G+Y C A++  G+      + + 
Sbjct: 214 LPELKCLKDGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 263

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 87.4 bits (216), Expect = 4e-19
 Identities = 41/274 (14%), Positives = 76/274 (27%), Gaps = 36/274 (13%)

Query: 263 LVEIRSPTEIKCQFDLNNTIPFS--FRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDG 320
           ++E+ +   + C  D    +  +    A GD  +        +              +  
Sbjct: 14  VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGT 73

Query: 321 GRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIK 380
            R +      +        +++ S     PA    L    V  GT   +  E     ++ 
Sbjct: 74  QRLTCAVILGNQSQETLQTVTIYS----FPAPNVILTKPEVSEGTEVTVKCEAHPRAKVT 129

Query: 381 IHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHC----SCE 436
           ++           ++             L +    +   ++C A   V         + E
Sbjct: 130 LNGVPAQPLGPRAQL------------LLKATPEDNGRSFSCSATLEVAGQLIHKNQTRE 177

Query: 437 LSVLVPKAYKAPFFTKEL---EAILTEQGTVSLECKVMGIPTPQLIWYKD-NKKIKAGDI 492
           L VL       P   +          E    +  C+  G P P+L   KD    +  G+ 
Sbjct: 178 LRVLYG-----PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGES 232

Query: 493 FALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
             +T         GTY C A +  G       V 
Sbjct: 233 VTVT-----RDLEGTYLCRARSTQGEVTREVTVN 261

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 76.2 bits (187), Expect = 3e-15
 Identities = 39/305 (12%), Positives = 79/305 (25%), Gaps = 46/305 (15%)

Query: 544 LMPPGPAPIFIKEVENVKAKIGTSAILECQV--LVPPWPRSIYWYNKEGVVEASDKYHIM 601
           ++P  P  +    V     ++ T   + C +  L P     ++    +  +  +  Y   
Sbjct: 1   VLPATPPQLVSPRV----LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGN- 55

Query: 602 ADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAV 661
            D     +      E        C     +  ++     V +     Y  P     L   
Sbjct: 56  -DSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQ-TVTI-----YSFPAPNVILTKP 108

Query: 662 MTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDV-YQLTGTSSLGSYCCVAKNVMGKA 719
              +G  V+ +C+       TL             +  + T   +  S+ C A   +   
Sbjct: 109 EVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQ 168

Query: 720 ESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNE--EFKFTVQVSISPE 777
                 T E              L     P+  E       T  E  +     Q   +P 
Sbjct: 169 LIHKNQTRE--------------LRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPL 214

Query: 778 PKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFL 837
           P++   +D    +                     +    +  + C A +  G+      +
Sbjct: 215 PELKCLKDGTFPLPIGE--------------SVTVTRDLEGTYLCRARSTQGEVTREVTV 260

Query: 838 KLNVP 842
            +  P
Sbjct: 261 NVLSP 265

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 75.1 bits (184), Expect = 7e-15
 Identities = 40/281 (14%), Positives = 75/281 (26%), Gaps = 55/281 (19%)

Query: 68  DVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELS 127
           +   + A GD  +        +              +   R +      +        ++
Sbjct: 35  EAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVT 94

Query: 128 VESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPI 187
           + S     PA    L    V  GT   +          KC+   +     +       P+
Sbjct: 95  IYS----FPAPNVILTKPEVSEGTEVTV----------KCEA--HPRAKVTLNGVPAQPL 138

Query: 188 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 247
                       R +L ++    D+G  +S +A+ E          + E +V   P    
Sbjct: 139 ----------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDE 188

Query: 248 RLH--DIAVKVGTRARLLVEIRS--PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAIN 303
           R    +      ++   + +       E+KC  D    +P                    
Sbjct: 189 RDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP-------------------- 228

Query: 304 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
                      V RD  G Y   A +  G  T +  ++V S
Sbjct: 229 -----IGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 68.2 bits (166), Expect = 1e-12
 Identities = 38/248 (15%), Positives = 73/248 (29%), Gaps = 44/248 (17%)

Query: 4   PTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRV-------- 55
             P + +  D+   KA    +++   +D       TC  +    +  +   V        
Sbjct: 47  LNPTVTYGNDSFSAKA----SVSVTAED-EGTQRLTCAVILGNQSQETLQTVTIYSFPAP 101

Query: 56  -IARGQQSFLDNDDVPFN-RAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTA 113
            +   +    +  +V     A     +  N   A     R +L ++    D+G  +S +A
Sbjct: 102 NVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSA 161

Query: 114 SNESGYSTAKFELSVESQVPDAPAFIRRLH--DIAVKVGTRARLLVEIRS--PTEIKCQF 169
           + E          + E +V   P    R    +      ++   + +       E+KC  
Sbjct: 162 TLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK 221

Query: 170 DLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTA 229
           D    +P                               V RD  G Y   A +  G  T 
Sbjct: 222 DGTFPLP-------------------------IGESVTVTRDLEGTYLCRARSTQGEVTR 256

Query: 230 KFELSVES 237
           +  ++V S
Sbjct: 257 EVTVNVLS 264

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score =  105 bits (264), Expect = 4e-25
 Identities = 40/294 (13%), Positives = 77/294 (26%), Gaps = 33/294 (11%)

Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEA 617
             +   + ++ +L C          + W       E   +     DG     + +  L  
Sbjct: 8   PELVLNVSSTFVLTCSG-----SAPVVWERMSQ--EPPQEMAKAQDGTFSSVLTLTNLTG 60

Query: 618 VDDGEWKCVATSSSGVKQFSAA--YVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVV 675
           +D GE+ C    S G++       Y+ V  P     P   E L   +T+   ++  C+V 
Sbjct: 61  LDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT 120

Query: 676 GFPTPTLQWFKDNEELKPGDVYQL----TGTSSLGSYCCVAKNVMGKAESSTQLTIEDIR 731
             P   +   +   ++     Y      +G     SY C       + +S          
Sbjct: 121 D-PQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVY---- 175

Query: 732 NHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQ--- 788
                           +               E       V  +      W    ++   
Sbjct: 176 -----------RLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGR 224

Query: 789 -VVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
            V    +  +         L I + E+ D   + C  T           + + V
Sbjct: 225 LVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITV 278

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score =  100 bits (250), Expect = 2e-23
 Identities = 46/301 (15%), Positives = 82/301 (27%), Gaps = 61/301 (20%)

Query: 455 EAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL--------- 505
           E +L    T  L C      +  ++W + +++       A        S L         
Sbjct: 9   ELVLNVSSTFVLTCSG----SAPVVWERMSQEPPQEMAKAQDGTFS--SVLTLTNLTGLD 62

Query: 506 -GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKI 564
            G Y C   +  G      + +            VP     P         E   +    
Sbjct: 63  TGEYFCTHNDSRGLETDERKRL---------YIFVP----DPTVGFLPNDAEELFIFLTE 109

Query: 565 GTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWK 624
            T   + C+V  P     +  + K+G         +  D   G+S         +D  + 
Sbjct: 110 ITEITIPCRVTDPQ-LV-VTLHEKKG----DVALPVPYDHQRGFSGIF------EDRSYI 157

Query: 625 CVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQW 684
           C  T         A YV+ L   +      V +++ V+     ++  C V+G      +W
Sbjct: 158 CKTTIGDREVDSDAYYVYRLQVSSI--NVSVNAVQTVVRQGENITLMCIVIGNEVVNFEW 215

Query: 685 FKDNEELK--------PGDVYQLTGTSSL----------GSYCCVAKNVMGKAESSTQLT 726
               +E                    S L          G+Y C     +   +    + 
Sbjct: 216 TYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAIN 275

Query: 727 I 727
           I
Sbjct: 276 I 276

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 98.6 bits (245), Expect = 1e-22
 Identities = 43/295 (14%), Positives = 91/295 (30%), Gaps = 32/295 (10%)

Query: 358 DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDS 417
           ++ + V +   L     +P    + W R  ++  + ++ + Q       + L++++  D+
Sbjct: 9   ELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQ-EMAKAQDGTFSSVLTLTNLTGLDT 63

Query: 418 GRWTCLAENAVGRSHC---SCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIP 474
           G + C   ++ G          + V  P     P   +EL   LTE   +++ C+V   P
Sbjct: 64  GEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-P 122

Query: 475 TPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFL 534
              +  ++    +     +             +Y C+         S +  + R      
Sbjct: 123 QLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYR------ 176

Query: 535 DNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY----NKEG 590
                          +            + G +  L C V+      +  W         
Sbjct: 177 -----------LQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVV-NFEWTYPRKESGR 224

Query: 591 VVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAA-YVHVL 644
           +VE    + +         + I   E  D G + C  T S    Q   A  + V+
Sbjct: 225 LVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVV 279

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 97.5 bits (242), Expect = 2e-22
 Identities = 37/284 (13%), Positives = 72/284 (25%), Gaps = 53/284 (18%)

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTG--TSSL----------GSYCCVAKNV 715
               C      +  + W + ++E          G  +S L          G Y C   + 
Sbjct: 18  FVLTCSG----SAPVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDS 73

Query: 716 MGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSIS 775
            G      +     +      +  +  L N+    FI        T   E     +V+  
Sbjct: 74  RGLETDERKRLYIFVP-----DPTVGFLPNDAEELFI------FLTEITEITIPCRVT-D 121

Query: 776 PEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSC 835
           P+  V+       V                  +     + +   + C  T    +  +  
Sbjct: 122 PQLVVTLHEKKGDVALPVPY----------DHQRGFSGIFEDRSYICKTTIGDREVDSDA 171

Query: 836 FLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKI 895
           +    +         +  ++ V+ +G  + L C VIG      +W    +E         
Sbjct: 172 YYVYRLQVSSINVS-VNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVT 230

Query: 896 ISGEDGTCCL--------------GIYTCEAHNCMGTTSSSAAL 925
               D    +              G YTC     +       A+
Sbjct: 231 DFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAI 274

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 96.7 bits (240), Expect = 5e-22
 Identities = 41/282 (14%), Positives = 77/282 (27%), Gaps = 35/282 (12%)

Query: 262 LLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGG 321
           L++ + S   + C        P  +      P                L +  +   D G
Sbjct: 10  LVLNVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSV-LTLTNLTGLDTG 64

Query: 322 RYSVTASNESGYSTAKFELSVESQVPDAPA-FIRRLHD---IAVKVGTRARLLVEIRSPT 377
            Y  T ++  G  T +    +   VPD    F+    +   I +   T   +   +  P 
Sbjct: 65  EYFCTHNDSRGLETDE-RKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDP- 122

Query: 378 EIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCEL 437
           ++ +  +     +     Y  Q              +F+   + C       R   S   
Sbjct: 123 QLVVTLHEKKGDVALPVPYDHQ---------RGFSGIFEDRSYICKTTIG-DREVDSDAY 172

Query: 438 SVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAG----DIF 493
            V   +          ++ ++ +   ++L C V+G       W    K+          F
Sbjct: 173 YVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDF 232

Query: 494 ALTANPKDPSSL----------GTYTCEAVNCMGAAFSTSRV 525
            L       S L          GTYTC     +        +
Sbjct: 233 LLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAI 274

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 80.1 bits (197), Expect = 2e-16
 Identities = 37/293 (12%), Positives = 80/293 (27%), Gaps = 30/293 (10%)

Query: 155 LLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGG 214
           L++ + S   + C        P  +      P                L +  +   D G
Sbjct: 10  LVLNVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSV-LTLTNLTGLDTG 64

Query: 215 RYSVTASNESGYSTAKFELSVESQVPDAPA-FIRRLHDIAVKVGTRARLLVEIRSPTEIK 273
            Y  T ++  G  T +    +   VPD    F+    +          + +   +   I 
Sbjct: 65  EYFCTHNDSRGLETDE-RKRLYIFVPDPTVGFLPNDAEELF-------IFLTEITEITIP 116

Query: 274 CQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGY 333
           C+   +  +  +   +         +   ++ G + +        +   Y    +     
Sbjct: 117 CRVT-DPQLVVTLHEKKGDVALPVPYD--HQRGFSGIF-------EDRSYICKTTIGDRE 166

Query: 334 STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN 393
             +        QV  +           V+ G    L+  +     +   W    ++    
Sbjct: 167 VDSDAYYVYRLQVS-SINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRL 225

Query: 394 KIYRTQHDGNFYFIDLS-----SVSLFDSGRWTCLAENAVGRSHCSCELSVLV 441
               T    +  +   S     S  L DSG +TC    +V        +++ V
Sbjct: 226 VEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITV 278

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 67.4 bits (164), Expect = 3e-12
 Identities = 27/260 (10%), Positives = 69/260 (26%), Gaps = 28/260 (10%)

Query: 96  LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA-FIRRLHDIAVKVGTRAR 154
           L +  +   D G Y  T ++  G  T +    +   VPD    F+    +          
Sbjct: 53  LTLTNLTGLDTGEYFCTHNDSRGLETDE-RKRLYIFVPDPTVGFLPNDAEELF------- 104

Query: 155 LLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGG 214
           + +   +   I C+   +  +  +   +         +   ++ G + +        +  
Sbjct: 105 IFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVPYD--HQRGFSGIF-------EDR 154

Query: 215 RYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKC 274
            Y    +       +        QV  +           V+ G    L+  +     +  
Sbjct: 155 SYICKTTIGDREVDSDAYYVYRLQVS-SINVSVNAVQTVVRQGENITLMCIVIGNEVVNF 213

Query: 275 QFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS 334
           ++                 +            R+ L+I     +D G Y+   +      
Sbjct: 214 EWTYPRKESGRLVEPVTDFLLDMP-----YHIRSILHIPSAELEDSGTYTCNVTESVNDH 268

Query: 335 TAKFELSVESQVPDAPAFIR 354
             +  +++   V +      
Sbjct: 269 QDEKAINI--TVVE-SGHHH 285

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 67.0 bits (163), Expect = 5e-12
 Identities = 30/161 (18%), Positives = 51/161 (31%), Gaps = 6/161 (3%)

Query: 769 TVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDF 828
           T  ++ S    V W R  Q+  +            V  L +  L   D  E+ C   +  
Sbjct: 17  TFVLTCSGSAPVVWERMSQEPPQEMAKAQDGTFSSV--LTLTNLTGLDTGEYFCTHNDSR 74

Query: 829 GQ---SITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGR 885
           G         ++ +  P     P   EEL   L+E   + + C+V   PQ  +   +   
Sbjct: 75  GLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHEKKG 133

Query: 886 ELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALL 926
           ++     +    G  G      Y C+         S A  +
Sbjct: 134 DVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYV 174

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 60.5 bits (146), Expect = 7e-10
 Identities = 25/272 (9%), Positives = 63/272 (23%), Gaps = 40/272 (14%)

Query: 5   TPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTSR 54
           +  ++W + +++       A        S L          G Y C   +  G      +
Sbjct: 25  SAPVVWERMSQEPPQEMAKAQDGTFS--SVLTLTNLTGLDTGEYFCTHNDSRGLETDERK 82

Query: 55  VI----ARGQQSFL--DNDDVPFNRAQGD---------HP----IFGNRFRAINRDGRTE 95
            +          FL  D +++     +            P        +   +      +
Sbjct: 83  RLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQLVVTLHEKKGDVALPVPYD 142

Query: 96  LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 155
                    +   Y    +       +        QV  +           V+ G    L
Sbjct: 143 HQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVS-SINVSVNAVQTVVRQGENITL 201

Query: 156 LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGR 215
           +  +     +  ++                 +            R+ L+I     +D G 
Sbjct: 202 MCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMP-----YHIRSILHIPSAELEDSGT 256

Query: 216 YSVTASNESGYSTAKFELSVESQVPDAPAFIR 247
           Y+   +        +  +++   V +      
Sbjct: 257 YTCNVTESVNDHQDEKAINI--TVVE-SGHHH 285

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 53.6 bits (128), Expect = 1e-07
 Identities = 14/168 (8%), Positives = 37/168 (22%), Gaps = 33/168 (19%)

Query: 3   IPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIAR---- 58
            P   +  ++    +     +             +Y C+         S +  + R    
Sbjct: 121 DPQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVS 180

Query: 59  --------GQQSFLDNDDVPFN-RAQGDHPI-------------FGNRFRAINRDGRTE- 95
                    Q      +++       G+  +                       D     
Sbjct: 181 SINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHI 240

Query: 96  ---LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 140
              L+I     +D G Y+   +        +  +++   V +      
Sbjct: 241 RSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI--TVVE-SGHHH 285

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 42.0 bits (98), Expect = 6e-04
 Identities = 12/78 (15%), Positives = 19/78 (24%), Gaps = 12/78 (15%)

Query: 857 VLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL--------GIY 908
           VL+      L C         + W +  +E                  L        G Y
Sbjct: 11  VLNVSSTFVLTCSG----SAPVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEY 66

Query: 909 TCEAHNCMGTTSSSAALL 926
            C  ++  G  +     L
Sbjct: 67  FCTHNDSRGLETDERKRL 84

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score =  104 bits (260), Expect = 1e-24
 Identities = 46/312 (14%), Positives = 84/312 (26%), Gaps = 54/312 (17%)

Query: 442 PKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDN--KKIKAGDIFALTAN 498
           P     P        ++ E G T+SL C         + W       ++           
Sbjct: 7   PGEPSPPSIHPAQSELIVEAGDTLSLTCID----PDFVRWTFKTYFNEMVENKKNEWIQE 62

Query: 499 PKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVE 558
             + +  GTYTC   N + ++                        +    PA +F+    
Sbjct: 63  KAEATRTGTYTCSNSNGLTSSIY----------------------VFVRDPAKLFLVG-L 99

Query: 559 NVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAV 618
            +  K  + A++ C +  P           +G    +D   +  +   G +I  N   A 
Sbjct: 100 PLFGKEDSDALVRCPLTDPQVS-QYSLIECDGKSLPTDLTFVP-NPKAGITI-KNVKRAY 156

Query: 619 DDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFP 678
                +C A             + V           V     ++      +  C +    
Sbjct: 157 HRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVS 216

Query: 679 TP-TLQWFKDNEELKPG----------DVYQLTGTSSL----------GSYCCVAKNVMG 717
           T     W K N + +              +      +L          G + C A N  G
Sbjct: 217 TSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFG 276

Query: 718 KAESSTQLTIED 729
            A  +T L + +
Sbjct: 277 SANVTTTLKVVE 288

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 99.0 bits (246), Expect = 7e-23
 Identities = 51/316 (16%), Positives = 83/316 (26%), Gaps = 54/316 (17%)

Query: 543 SLMPPGPA-PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIM 601
           S  P  P+ P        +  + G +  L C       P  + W  K    E  +     
Sbjct: 4   SASPGEPSPPSIHPAQSELIVEAGDTLSLTCID-----PDFVRWTFKTYFNEMVENKK-- 56

Query: 602 ADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAV 661
                         EA   G + C  ++       S+ YV V  P       F+  L   
Sbjct: 57  ------NEWIQEKAEATRTGTYTCSNSNGLT----SSIYVFVRDPAK----LFLVGLPLF 102

Query: 662 MTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD------------VYQLTGTSSLGSYC 709
             +D      C +           + + +  P D            +  +          
Sbjct: 103 GKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVR 162

Query: 710 CVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFT 769
           C A+   G    S + T++                    P       S      + F   
Sbjct: 163 CAAQR-DGTWLHSDKFTLKVREAI------------KAIPVVSVPETSHLLKKGDTFTVV 209

Query: 770 VQVS-ISPEPKVSWFRDDQQVVESDNVKILKETLGVCH------LKIHALEVADQAEWKC 822
             +  +S      W + + Q      VK      G  +      L I +  V D   + C
Sbjct: 210 CTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMC 269

Query: 823 IATNDFGQSITSCFLK 838
            A N FG +  +  LK
Sbjct: 270 YANNTFGSANVTTTLK 285

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 99.0 bits (246), Expect = 8e-23
 Identities = 40/277 (14%), Positives = 74/277 (26%), Gaps = 30/277 (10%)

Query: 176 PFSFRAQGDHPI---FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFE 232
             S        +   F   F  +  + + E    +      G Y+ + SN    S   F 
Sbjct: 29  TLSLTCIDPDFVRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVF- 87

Query: 233 LSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDH 292
                 V D          +  K            S   ++C         +S       
Sbjct: 88  ------VRDPAKLFLVGLPLFGKED----------SDALVRCPLTDPQVSQYSLIECDGK 131

Query: 293 PIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG-YSTAKFELSVESQVPDAPA 351
            +  +    +             R          A  +     + KF L V   +   P 
Sbjct: 132 SLPTDL-TFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPV 190

Query: 352 FIRRLHDIAVKVGTRARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID-- 408
                    +K G    ++  I+   T +   W + + + +     +        F    
Sbjct: 191 VSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYER 250

Query: 409 -----LSSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
                +SS  + DSG + C A N  G ++ +  L V+
Sbjct: 251 QETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 96.7 bits (240), Expect = 5e-22
 Identities = 45/318 (14%), Positives = 82/318 (25%), Gaps = 48/318 (15%)

Query: 341 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQH 400
           S     P  P+      ++ V+ G    L           + W       E         
Sbjct: 4   SASPGEPSPPSIHPAQSELIVEAGDTLSLTCIDPDF----VRWTFKTYFNEM-------V 52

Query: 401 DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTE 460
           +               +G +TC   N +  S     + V  P    A  F   L     E
Sbjct: 53  ENKKNEWIQEKAEATRTGTYTCSNSNGLTSS---IYVFVRDP----AKLFLVGLPLFGKE 105

Query: 461 QGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFA--------LTANPKDPSSLGTYTCEA 512
                + C +      Q    + + K    D+             N K         C A
Sbjct: 106 DSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAA 165

Query: 513 VNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILEC 572
               G    + +   + ++                   P+      +   K G +  + C
Sbjct: 166 QR-DGTWLHSDKFTLKVRE--------------AIKAIPVVSVPETSHLLKKGDTFTVVC 210

Query: 573 QVLVPPWPRSIYWY--NKEGVVEASDKYHIMADGLGGYSIE----INYLEAVDDGEWKCV 626
            +       +  W   N +    A  K++    G   Y  +    I+     D G + C 
Sbjct: 211 TIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCY 270

Query: 627 ATSSSGVKQFSAAYVHVL 644
           A ++ G    +   + V+
Sbjct: 271 ANNTFGSANVT-TTLKVV 287

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 95.6 bits (237), Expect = 1e-21
 Identities = 43/302 (14%), Positives = 85/302 (28%), Gaps = 46/302 (15%)

Query: 646 PKNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSS 704
           P     P    +   ++ + G  +S  C    F   T + + +       + +      +
Sbjct: 7   PGEPSPPSIHPAQSELIVEAGDTLSLTCIDPDFVRWTFKTYFNEMVENKKNEWIQEKAEA 66

Query: 705 L--GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATV 762
              G+Y C   N      SS  + + D                    K            
Sbjct: 67  TRTGTYTCSNSN---GLTSSIYVFVRD------------------PAKLFLVGLPLFGKE 105

Query: 763 NEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKC 822
           + +      ++     + S    D + + +D   +     G+     +      +   +C
Sbjct: 106 DSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGI--TIKNVKRAYHRLCVRC 163

Query: 823 IATNDFGQSITSCFLKLNVPKHYKKPK--FLEELKAVLSEGGAVNLECKVIGVPQP-TLK 879
            A  D G  + S    L V +  K      + E   +L +G    + C +  V       
Sbjct: 164 AAQRD-GTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSM 222

Query: 880 WFKDGRELKAGDIHKIISGEDGTCCL----------------GIYTCEAHNCMGTTSSSA 923
           W K   + +     K  S   G                    G++ C A+N  G+ + + 
Sbjct: 223 WLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTT 282

Query: 924 AL 925
            L
Sbjct: 283 TL 284

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 89.0 bits (220), Expect = 2e-19
 Identities = 41/273 (15%), Positives = 70/273 (25%), Gaps = 26/273 (9%)

Query: 75  QGDHPI---FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 131
                +   F   F  +  + + E    +      G Y+ + SN    S   F       
Sbjct: 35  IDPDFVRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVF------- 87

Query: 132 VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNR 191
           V D          +  K            S   ++C         +S        +  + 
Sbjct: 88  VRDPAKLFLVGLPLFGKED----------SDALVRCPLTDPQVSQYSLIECDGKSLPTDL 137

Query: 192 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESG-YSTAKFELSVESQVPDAPAFIRRLH 250
              +             R          A  +     + KF L V   +   P       
Sbjct: 138 -TFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPET 196

Query: 251 DIAVKVGTRARLLVEIRS-PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE 309
              +K G    ++  I+   T +   +   N  P        +      F   N + +  
Sbjct: 197 SHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDF---NYERQET 253

Query: 310 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
           L I   R DD G +   A+N  G +     L V
Sbjct: 254 LTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 70.5 bits (172), Expect = 3e-13
 Identities = 38/255 (14%), Positives = 65/255 (25%), Gaps = 29/255 (11%)

Query: 5   TPQLIWYKDN--KKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAF------------ 50
              + W       ++             + +  GTYTC   N + ++             
Sbjct: 37  PDFVRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFL 96

Query: 51  -STSRVIARGQQSFL-------DNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVR 102
                       + +                  G        F    + G T  N+   R
Sbjct: 97  VGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNV--KR 154

Query: 103 RDDGGRYSVTASNESG-YSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS 161
                     A  +     + KF L V   +   P          +K G    ++  I+ 
Sbjct: 155 AYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKD 214

Query: 162 -PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTA 220
             T +   +   N  P        +      F   N + +  L I   R DD G +   A
Sbjct: 215 VSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDF---NYERQETLTISSARVDDSGVFMCYA 271

Query: 221 SNESGYSTAKFELSV 235
           +N  G +     L V
Sbjct: 272 NNTFGSANVTTTLKV 286

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 63.2 bits (153), Expect = 9e-11
 Identities = 25/190 (13%), Positives = 35/190 (18%), Gaps = 35/190 (18%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLK 808
           P              +    T          V W          +N K            
Sbjct: 13  PSIHPAQSELIVEAGDTLSLTCIDP----DFVRWTFKTYFNEMVENKKN--------EWI 60

Query: 809 IHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLEC 868
               E      + C  +N    SI      + V        FL  L     E     + C
Sbjct: 61  QEKAEATRTGTYTCSNSNGLTSSIY-----VFV--RDPAKLFLVGLPLFGKEDSDALVRC 113

Query: 869 KVIGVPQPTLKWFK-DGRELKAGD-----------IHKIISGEDGTCCLGIYTCEAHNCM 916
            +           + DG+ L               I  +              C A    
Sbjct: 114 PLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHR----LCVRCAAQRDG 169

Query: 917 GTTSSSAALL 926
               S    L
Sbjct: 170 TWLHSDKFTL 179

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 26/170 (15%), Positives = 37/170 (21%), Gaps = 43/170 (25%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFA--------LTANPKDPSSLGTYTCEAVNCMGAAFS-- 51
                Q    + + K    D+             N K         C A        S  
Sbjct: 117 DPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDK 176

Query: 52  -------------------TSRVIARGQQSFL----DNDDVP------FNRAQGDHPIFG 82
                              TS ++ +G    +     +              Q  H    
Sbjct: 177 FTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQV 236

Query: 83  NRFRAINRDGRTE----LNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
                   D   E    L I   R DD G +   A+N  G +     L V
Sbjct: 237 KHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  104 bits (261), Expect = 1e-24
 Identities = 36/289 (12%), Positives = 68/289 (23%), Gaps = 37/289 (12%)

Query: 668 VSFECKVVGFPTPT-----LQWFKDNEELKPGDVYQLTGTSSLGSY-CCVAKNVMGKAES 721
           V+  C +            L W +  E       +Q  G S   S         +G    
Sbjct: 18  VTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELR 77

Query: 722 STQLTIEDIR-------------NHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKF 768
           +  L +  +R                      + L     P+    ++  Q T       
Sbjct: 78  NASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMA 137

Query: 769 TVQVSIS-PEPKVSWFRDDQQVVESDNVKILKETLGVC--HLKIHALEVADQAEWKCIAT 825
               +   P  +++W  D   +  +  V               +      D     C   
Sbjct: 138 RCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVE 197

Query: 826 NDFGQSITSCFLKLNVPKHYKKPKFLEELKA-VLSEGGAVNLECKVIGVPQPT-LKWFKD 883
           ++  +      + L V  +Y     +               L C     P+PT   W   
Sbjct: 198 HESFEKPQLLTVNLTV--YYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTT 255

Query: 884 GRELKAGDIHK----IISG---EDGTCCLGIYTCEAHNCMGTTSSSAAL 925
              L    + +    +I                C   N +G   +   +
Sbjct: 256 MGPLPPFAVAQGAQLLIRPVDKPIN----TTLICNVTNALGARQAELTV 300

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  104 bits (260), Expect = 2e-24
 Identities = 47/335 (14%), Positives = 88/335 (26%), Gaps = 79/335 (23%)

Query: 552 IFIKEVENVKAKIGTSAILECQVLVPPWP----RSIYWYNKEGVVEASDKYHI------- 600
           + ++    V   +G S  L C + VP         + W  + G   +   +H        
Sbjct: 2   VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWA-RHGESGSMAVFHQTQGPSYS 60

Query: 601 -----------MADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNY 649
                      +   L   S+ +  L   D+G + C+  +     +    ++ VL     
Sbjct: 61  ESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK--- 117

Query: 650 RKPRFVESLKAV-MTDDGLVSFECKVV-GFPTPTLQWFKDNEELKPGDVYQ------LTG 701
             P+    ++ V +T + +    C    G P   + W  D   +             +T 
Sbjct: 118 --PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTV 175

Query: 702 TSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKF 751
           TS             +  C  ++   +      + +                        
Sbjct: 176 TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLT---------------VYYPPEVS 220

Query: 752 IEGLKSCQATVNEEFKFTVQVSISPEP-KVSWFRDDQQV----VESDNVKILKETLGVCH 806
           I G  +       E   T     +PEP   +W      +    V                
Sbjct: 221 ISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQ----------- 269

Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
           L I  ++        C  TN  G       L + V
Sbjct: 270 LLIRPVDKPINTTLICNVTNALGARQAE--LTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 92.9 bits (230), Expect = 1e-20
 Identities = 41/324 (12%), Positives = 77/324 (23%), Gaps = 46/324 (14%)

Query: 138 FIRRLHDIAVKVGTRARLLVEIRSPTEIKCQF--------DLNNTIPFSFRAQGDHPIFG 189
            ++    +   +G    L   ++ P                 + ++    + QG      
Sbjct: 3   VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62

Query: 190 NRFRAINRDGRTE-----LNIRRVRRDDGGRYS-VTASNESGYSTAKFELSVESQVPDAP 243
            R   +      E     L +  +R +D G Y+ +  +   G  +    L V       P
Sbjct: 63  KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV--LAK--P 118

Query: 244 AFIRRLHDIAVKVGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 300
                +  + +                 P +I    D                +      
Sbjct: 119 QNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSD-------------LGGMPNTSQV 165

Query: 301 AINRDGRT----ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRL 356
                G         +    + DG   +    +ES        +++    P     I   
Sbjct: 166 PGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPP-EVSISGY 224

Query: 357 HDIAVKVGTRARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLF 415
            +        A L  + RS P     +W      L           G    I    V   
Sbjct: 225 DNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPP----FAVAQGAQLLI--RPVDKP 278

Query: 416 DSGRWTCLAENAVGRSHCSCELSV 439
            +    C   NA+G       + V
Sbjct: 279 INTTLICNVTNALGARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 89.0 bits (220), Expect = 2e-19
 Identities = 49/330 (14%), Positives = 88/330 (26%), Gaps = 68/330 (20%)

Query: 352 FIRRLHDIAVKVGTRARLLVEIRSPTE-----IKIHWYRNDRKLEENKIYRTQH------ 400
            ++    +   +G    L   ++ P        ++ W R+         ++TQ       
Sbjct: 3   VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62

Query: 401 ------------DGNFYFIDLSSVSLFDSGRWTCLAENAV-GRSHCSCELSVLVPKAYKA 447
                       +     + +  + + D G +TCL      G       L VL       
Sbjct: 63  KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK----- 117

Query: 448 PFFTKEL-EAILTEQGTVSLECKVM-GIPTPQLIWYKDNKKIKAGDIFALTANPKDP--S 503
           P  T E+ +  LT +      C    G P  Q+ W+ D   +          +      S
Sbjct: 118 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTS 177

Query: 504 SL----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIF 553
                          TC+  +          V             V +       P  + 
Sbjct: 178 LWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNL----------TVYY-------PPEVS 220

Query: 554 IKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEIN 613
           I   +N        A L C     P P    W    G +     + +         + I 
Sbjct: 221 ISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLP---PFAVAQGA----QLLIR 273

Query: 614 YLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
            ++   +    C  T++ G +Q     V V
Sbjct: 274 PVDKPINTTLICNVTNALGARQAE-LTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 81.3 bits (200), Expect = 1e-16
 Identities = 42/288 (14%), Positives = 72/288 (25%), Gaps = 52/288 (18%)

Query: 71  FNRAQGDHPIFGNRFRAINRDGRTE-----LNIRRVRRDDGGRYS-VTASNESGYSTAKF 124
           F++ QG       R   +      E     L +  +R +D G Y+ +  +   G  +   
Sbjct: 51  FHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDI 110

Query: 125 ELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRA 181
            L V       P     +  + +                 P +I    D           
Sbjct: 111 WLRV--LAK--PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSD----------- 155

Query: 182 QGDHPIFGNRFRAINRDGRT----ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 237
                +           G         +    + DG   +    +ES        +++  
Sbjct: 156 --LGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTV 213

Query: 238 QVPDAPAFIRRLHDIAVKVGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPI 294
             P     I    +        A L  + RS   PT           +P    AQG    
Sbjct: 214 YYPP-EVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTT-MGPLPPFAVAQG---- 267

Query: 295 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
                         +L IR V +          +N  G   A+  + V
Sbjct: 268 -------------AQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 52.0 bits (124), Expect = 4e-07
 Identities = 19/159 (11%), Positives = 35/159 (22%), Gaps = 32/159 (20%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPKDP--SSL----------GTYTCEAVNCMGAA 49
           G P  Q+ W+ D   +          +      S               TC+  +     
Sbjct: 144 GRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEK 203

Query: 50  FSTSRV------------IARGQQSFLDNDDVPFN-RAQGDHPIF-------GNRFRAIN 89
                V                   +L  ++      A+ +                   
Sbjct: 204 PQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFA 263

Query: 90  RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
                +L IR V +          +N  G   A+  + V
Sbjct: 264 VAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 99.2 bits (247), Expect = 3e-24
 Identities = 30/151 (19%), Positives = 58/151 (38%), Gaps = 12/151 (7%)

Query: 699 LTGTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSC 758
           ++G  + GS      N                    +  +++     +  P F + +   
Sbjct: 4   MSGRKASGSSPTSPINANKVENED------------AFLEEVAEEKPHVKPYFTKTILDM 51

Query: 759 QATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQA 818
           +       +F  +V   P+P+V WF+DD  V ES + +I  +  G C L I  +   D A
Sbjct: 52  EVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDA 111

Query: 819 EWKCIATNDFGQSITSCFLKLNVPKHYKKPK 849
           ++ C A N  G++  +  L +       + +
Sbjct: 112 KYTCKAVNSLGEATCTAELLVETMGKEGEGE 142

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 96.8 bits (241), Expect = 2e-23
 Identities = 28/133 (21%), Positives = 60/133 (45%), Gaps = 1/133 (0%)

Query: 311 NIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLL 370
            +   +       S   +N+     A  E   E +    P F + + D+ V  G+ AR  
Sbjct: 3   GMSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFD 62

Query: 371 VEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGN-FYFIDLSSVSLFDSGRWTCLAENAVG 429
            ++    + ++ W+++D  ++E++ ++  +D      + +S V   D  ++TC A N++G
Sbjct: 63  CKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG 122

Query: 430 RSHCSCELSVLVP 442
            + C+ EL V   
Sbjct: 123 EATCTAELLVETM 135

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 96.1 bits (239), Expect = 4e-23
 Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 12/124 (9%)

Query: 814 VADQAEWKCIATNDFGQSITSCFLKLNVP-KHYKKPKFLEELKAV-LSEGGAVNLECKVI 871
                       N         FL+     K + KP F + +  + + EG A   +CKV 
Sbjct: 7   RKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVE 66

Query: 872 GVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCEAHNCMGTTSS 921
           G P P + WFKD   +K     +I   E+G C L            YTC+A N +G  + 
Sbjct: 67  GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATC 126

Query: 922 SAAL 925
           +A L
Sbjct: 127 TAEL 130

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 89.1 bits (221), Expect = 8e-21
 Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 15/125 (12%)

Query: 619 DDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-LVSFECKVVGF 677
             G       +++ V+   A    V   K + KP F +++  +   +G    F+CKV G+
Sbjct: 9   ASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGY 68

Query: 678 PTPTLQWFKDNEELKPGDVYQLT----GTSSL----------GSYCCVAKNVMGKAESST 723
           P P + WFKD+  +K    +Q+     G  SL            Y C A N +G+A  + 
Sbjct: 69  PDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTA 128

Query: 724 QLTIE 728
           +L +E
Sbjct: 129 ELLVE 133

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 88.8 bits (220), Expect = 1e-20
 Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 12/123 (9%)

Query: 416 DSGRWTCLAENAVGRSHCSCELSVLVP-KAYKAPFFTKELEAILTEQG-TVSLECKVMGI 473
            SG       NA    +    L  +   K +  P+FTK +  +   +G     +CKV G 
Sbjct: 9   ASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGY 68

Query: 474 PTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTS 523
           P P+++W+KD+  +K    F +  + +   SL            YTC+AVN +G A  T+
Sbjct: 69  PDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTA 128

Query: 524 RVI 526
            ++
Sbjct: 129 ELL 131

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 76.8 bits (189), Expect = 2e-16
 Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 17/149 (11%)

Query: 506 GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIG 565
           G+     +N        + +    ++               P   P F K + +++   G
Sbjct: 11  GSSPTSPINANKVENEDAFLEEVAEE--------------KPHVKPYFTKTILDMEVVEG 56

Query: 566 TSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKC 625
           ++A  +C+V   P P  + W+  +  V+ S  + I  D  G  S+ I+ +   DD ++ C
Sbjct: 57  SAARFDCKVEGYPDP-EVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC 115

Query: 626 VATSSSGVKQFSAA-YVHVLMPKNYRKPR 653
            A +S G    +A   V   M K      
Sbjct: 116 KAVNSLGEATCTAELLVET-MGKEGEGEG 143

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 74.9 bits (184), Expect = 8e-16
 Identities = 35/145 (24%), Positives = 55/145 (37%), Gaps = 17/145 (11%)

Query: 97  NIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLL 156
            +   +       S   +N+     A  E   E +    P F + + D+ V  G+ AR  
Sbjct: 3   GMSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFD 62

Query: 157 VEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRD--GRTELNIRRVRRDD 212
            ++   P  E+    D             D+P+  +R   I+ D  G   L I  V  DD
Sbjct: 63  CKVEGYPDPEVMWFKD-------------DNPVKESRHFQIDYDEEGNCSLTISEVCGDD 109

Query: 213 GGRYSVTASNESGYSTAKFELSVES 237
             +Y+  A N  G +T   EL VE+
Sbjct: 110 DAKYTCKAVNSLGEATCTAELLVET 134

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 74.9 bits (184), Expect = 8e-16
 Identities = 35/145 (24%), Positives = 55/145 (37%), Gaps = 17/145 (11%)

Query: 204 NIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLL 263
            +   +       S   +N+     A  E   E +    P F + + D+ V  G+ AR  
Sbjct: 3   GMSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFD 62

Query: 264 VEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRD--GRTELNIRRVRRDD 319
            ++   P  E+    D             D+P+  +R   I+ D  G   L I  V  DD
Sbjct: 63  CKVEGYPDPEVMWFKD-------------DNPVKESRHFQIDYDEEGNCSLTISEVCGDD 109

Query: 320 GGRYSVTASNESGYSTAKFELSVES 344
             +Y+  A N  G +T   EL VE+
Sbjct: 110 DAKYTCKAVNSLGEATCTAELLVET 134

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 57.2 bits (138), Expect = 1e-09
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 10/65 (15%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
           G P P+++W+KD+  +K    F +  + +   SL            YTC+AVN +G A  
Sbjct: 67  GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATC 126

Query: 52  TSRVI 56
           T+ ++
Sbjct: 127 TAELL 131

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 29/124 (23%)

Query: 36  GTYTCEAVNCMGAAFSTSRVIARGQQSF---------------LDNDDVPFN-RAQG--- 76
           G+     +N        + +    ++                 ++     F+ + +G   
Sbjct: 11  GSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPD 70

Query: 77  --------DHPIFGNRFRAINRD--GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFEL 126
                   D+P+  +R   I+ D  G   L I  V  DD  +Y+  A N  G +T   EL
Sbjct: 71  PEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAEL 130

Query: 127 SVES 130
            VE+
Sbjct: 131 LVET 134

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  100 bits (250), Expect = 5e-24
 Identities = 36/192 (18%), Positives = 52/192 (27%), Gaps = 28/192 (14%)

Query: 759 QATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKE-------TLGVCHLKIHA 811
           +   N   K +   S    P+V W  D                      T     +   +
Sbjct: 15  RIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKS 74

Query: 812 LEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVNLECKV 870
           +   D   + C+ + + G S     +KL V      P           + G    L C  
Sbjct: 75  VTREDTGTYTCMVSEEGGNSYGEVKVKLIV---LVPPSKPTVNIPSSATIGNRAVLTCSE 131

Query: 871 I-GVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------------GIYTCEAH 913
             G P     WFKDG  +                                  G Y+CEA 
Sbjct: 132 QDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEAR 191

Query: 914 NCMGTTSSSAAL 925
           N  GT  +S A+
Sbjct: 192 NGYGTPMTSNAV 203

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 99.6 bits (248), Expect = 8e-24
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 16/208 (7%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 299
           +        ++ +      +L        +  ++ +FD  +T             + +R 
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 300 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDI 359
             +     T +  + V R+D G Y+   S E G S  + ++ +   VP  P+        
Sbjct: 64  TFLP----TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVP--PSKPTVNIPS 117

Query: 360 AVKVGTRARLL-VEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID-------LSS 411
           +  +G RA L   E       +  W+++   +  N         + Y ++          
Sbjct: 118 SATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDP 177

Query: 412 VSLFDSGRWTCLAENAVGRSHCSCELSV 439
           +S  D+G ++C A N  G    S  + +
Sbjct: 178 LSASDTGEYSCEARNGYGTPMTSNAVRM 205

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 96.6 bits (240), Expect = 1e-22
 Identities = 35/212 (16%), Positives = 52/212 (24%), Gaps = 36/212 (16%)

Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADG---- 604
            +         V+        L C       PR + W   +G       Y+         
Sbjct: 3   GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPR-VEWKFDQGDTTRLVCYNNKITASYED 61

Query: 605 ---LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSA-AYVHVLMPKNYRKPRFVESLKA 660
                   I    +   D G + C+ +   G         + VL+P     P        
Sbjct: 62  RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVP-----PSKPTVNIP 116

Query: 661 VMTDDGL-VSFECKVV-GFPTPTLQWFKDNEELKPGDVYQLT----------GTSSL--- 705
                G      C    G P     WFKD   +                    T  L   
Sbjct: 117 SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFD 176

Query: 706 -------GSYCCVAKNVMGKAESSTQLTIEDI 730
                  G Y C A+N  G   +S  + +E +
Sbjct: 177 PLSASDTGEYSCEARNGYGTPMTSNAVRMEAV 208

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 93.9 bits (233), Expect = 7e-22
 Identities = 34/202 (16%), Positives = 57/202 (28%), Gaps = 44/202 (21%)

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL---------------------G 706
           V   C   GF +P ++W  D  +      Y    T+S                      G
Sbjct: 22  VKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTG 81

Query: 707 SYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEF 766
           +Y C+     G +    ++                 L     P          AT+    
Sbjct: 82  TYTCMVSEEGGNSYGEVKVK----------------LIVLVPPSKPTVNIPSSATIGNRA 125

Query: 767 KFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKE------TLGVCHLKIHALEVADQAE 819
             T      SP  + +WF+D   +  +                    L    L  +D  E
Sbjct: 126 VLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGE 185

Query: 820 WKCIATNDFGQSITSCFLKLNV 841
           + C A N +G  +TS  +++  
Sbjct: 186 YSCEARNGYGTPMTSNAVRMEA 207

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 90.8 bits (225), Expect = 8e-21
 Identities = 41/208 (19%), Positives = 62/208 (29%), Gaps = 46/208 (22%)

Query: 463 TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPK-------DPSSL---------- 505
            V L C   G  +P++ W  D         +               P+ +          
Sbjct: 21  PVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDT 80

Query: 506 GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIG 565
           GTYTC      G ++   +V             VP          P          A IG
Sbjct: 81  GTYTCMVSEEGGNSYGEVKVKLIVL--------VP----------PSKPTVNIPSSATIG 122

Query: 566 TSAILECQVLV-PPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIE-------INYLEA 617
             A+L C      P      W+ K+G+V  ++     A     Y +         + L A
Sbjct: 123 NRAVLTCSEQDGSPPS-EYTWF-KDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA 180

Query: 618 VDDGEWKCVATSSSGVKQFSAA-YVHVL 644
            D GE+ C A +  G    S A  +  +
Sbjct: 181 SDTGEYSCEARNGYGTPMTSNAVRMEAV 208

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 90.4 bits (224), Expect = 1e-20
 Identities = 35/206 (16%), Positives = 61/206 (29%), Gaps = 33/206 (16%)

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYF-- 406
           +        ++ +      +L       +  ++ W  +         Y  +   ++    
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 407 ------IDLSSVSLFDSGRWTCLAENAVGRSHCSC--ELSVLVPKAYKAPFFTKELEAIL 458
                 I   SV+  D+G +TC+     G S+     +L VLVP     P          
Sbjct: 64  TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVP-----PSKPTVNIPSS 118

Query: 459 TEQG-TVSLECKV-MGIPTPQLIWYKDNKKIKAGDIFALTANPKD--------------- 501
              G    L C    G P  +  W+KD   +          +                  
Sbjct: 119 ATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPL 178

Query: 502 -PSSLGTYTCEAVNCMGAAFSTSRVI 526
             S  G Y+CEA N  G   +++ V 
Sbjct: 179 SASDTGEYSCEARNGYGTPMTSNAVR 204

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 80.8 bits (199), Expect = 2e-17
 Identities = 35/213 (16%), Positives = 69/213 (32%), Gaps = 12/213 (5%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
           +        ++ +      +L        +  ++ +FD  +T             + +R 
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 193 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDI 252
             +     T +  + V R+D G Y+   S E G S  + ++ +   VP  P+        
Sbjct: 64  TFLP----TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVP--PSKPTVNIPS 117

Query: 253 AVKVGTRARLL-VEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELN 311
           +  +G RA L   E       +  +   + I      +       + +      G  EL 
Sbjct: 118 SATIGNRAVLTCSEQDGSPPSEYTW-FKDGIVMPTNPKSTRAFSNSSYVLNPTTG--ELV 174

Query: 312 IRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
              +   D G YS  A N  G       + +E+
Sbjct: 175 FDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 207

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 77.7 bits (191), Expect = 3e-16
 Identities = 32/176 (18%), Positives = 54/176 (30%), Gaps = 8/176 (4%)

Query: 63  FLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTA 122
             D  D        +        R         +  + V R+D G Y+   S E G S  
Sbjct: 39  KFDQGDTTRLVCYNNKITASYEDRVTFLPT--GITFKSVTREDTGTYTCMVSEEGGNSYG 96

Query: 123 KFELSVESQVPDAPAFIRRLHDIAVKVGTRARLL-VEIRSPTEIKCQFDLNNTIPFSFRA 181
           + ++ +   VP  P+        +  +G RA L   E       +  +   + I      
Sbjct: 97  EVKVKLIVLVP--PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTW-FKDGIVMPTNP 153

Query: 182 QGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 237
           +       + +      G  EL    +   D G YS  A N  G       + +E+
Sbjct: 154 KSTRAFSNSSYVLNPTTG--ELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 207

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 61.1 bits (148), Expect = 2e-10
 Identities = 27/179 (15%), Positives = 44/179 (24%), Gaps = 51/179 (28%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPK-------DPSSL----------GTYTCEAVN 44
           G  +P++ W  D         +               P+ +          GTYTC    
Sbjct: 30  GFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSE 89

Query: 45  CMGAAFSTSRV------------------IARGQQSFLD---------------NDDVPF 71
             G ++   +V                     G ++ L                 D +  
Sbjct: 90  EGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVM 149

Query: 72  NRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 130
                    F N    +N      L    +   D G YS  A N  G       + +E+
Sbjct: 150 PTNPKSTRAFSNSSYVLNPTTGE-LVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 207

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 96.2 bits (240), Expect = 7e-24
 Identities = 24/92 (26%), Positives = 41/92 (44%)

Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH 806
           +APK  E ++S       +  F V+V   P+P+  W+++  ++  SD +        VC 
Sbjct: 4   EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63

Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
           L I  +   D A     A N  G++ +  FL 
Sbjct: 64  LVIRDVTGEDSASIMVKAINIAGETSSHAFLL 95

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 95.8 bits (239), Expect = 7e-24
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 11/92 (11%)

Query: 846 KKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC 904
           + PK  E +++  + +G   +   +V+G P P  +W+K+G +++  D       ED  C 
Sbjct: 4   EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63

Query: 905 L----------GIYTCEAHNCMGTTSSSAALL 926
           L               +A N  G TSS A LL
Sbjct: 64  LVIRDVTGEDSASIMVKAINIAGETSSHAFLL 95

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 83.5 bits (207), Expect = 2e-19
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 15/92 (16%)

Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT----GTSSL- 705
           P+  E +++     G    F  +VVG P P  +W+K+  +++  D             L 
Sbjct: 6   PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELV 65

Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIE 728
                     S    A N+ G+  S   L ++
Sbjct: 66  IRDVTGEDSASIMVKAINIAGETSSHAFLLVQ 97

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 82.7 bits (205), Expect = 3e-19
 Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 11/98 (11%)

Query: 444 AYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDP 502
           + +AP   + +++    QG       +V+G P P+  WYK+  KI+  D         + 
Sbjct: 2   SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 61

Query: 503 SSL----------GTYTCEAVNCMGAAFSTSRVIARGQ 530
             L           +   +A+N  G   S + ++ + +
Sbjct: 62  CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 81.2 bits (201), Expect = 1e-18
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 1/92 (1%)

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN-KIYRTQHDGNFYFI 407
           AP    R+    V  G+ A   V +    + +  WY+N  K+E + +IY    + N   +
Sbjct: 5   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 64

Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
            +  V+  DS      A N  G +     L V
Sbjct: 65  VIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 70.8 bits (174), Expect = 5e-15
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 546 PPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADG 604
           P   AP   + +++     G+ A    +V+  P P    WY K GV +E SD+ +     
Sbjct: 1   PSMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPE-CEWY-KNGVKIERSDRIYWYWPE 58

Query: 605 LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
                + I  +   D       A + +G +  S A++ V
Sbjct: 59  DNVCELVIRDVTGEDSASIMVKAINIAG-ETSSHAFLLV 96

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 58.8 bits (143), Expect = 8e-11
 Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 17/108 (15%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGN-R 191
           AP    R+    V  G+ A   V +   P  E +   +                I  + R
Sbjct: 5   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKN-------------GVKIERSDR 51

Query: 192 FRAI-NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 238
                  D   EL IR V  +D     V A N +G +++   L V+++
Sbjct: 52  IYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 58.8 bits (143), Expect = 8e-11
 Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 17/108 (15%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGN-R 298
           AP    R+    V  G+ A   V +   P  E +   +                I  + R
Sbjct: 5   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKN-------------GVKIERSDR 51

Query: 299 FRAI-NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
                  D   EL IR V  +D     V A N +G +++   L V+++
Sbjct: 52  IYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 10/69 (14%)

Query: 2  GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
          G P P+  WYK+  KI+  D         +   L           +   +A+N  G   S
Sbjct: 31 GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSS 90

Query: 52 TSRVIARGQ 60
           + ++ + +
Sbjct: 91 HAFLLVQAK 99

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 77  DHPIFGN-RFRAI-NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 131
              I  + R       D   EL IR V  +D     V A N +G +++   L V+++
Sbjct: 43  GVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  100 bits (249), Expect = 7e-24
 Identities = 39/203 (19%), Positives = 58/203 (28%), Gaps = 29/203 (14%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKIL-------KET 801
                     Q   NE  K T   S    P+V W                       + T
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 802 LGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSE 860
                +   ++   D  E+ C+ + + GQ+     + L V      P          ++ 
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTV---LVPPSKPTISVPSSVTI 118

Query: 861 GGAVNLECKVI-GVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL-------------- 905
           G    L C    G P     WFKDG  +   D  K  +  + +  +              
Sbjct: 119 GNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTA 178

Query: 906 ---GIYTCEAHNCMGTTSSSAAL 925
              G Y C+A N  GT   S A 
Sbjct: 179 FDSGEYYCQAQNGYGTAMRSEAA 201

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 98.9 bits (246), Expect = 2e-23
 Identities = 38/211 (18%), Positives = 70/211 (33%), Gaps = 17/211 (8%)

Query: 243 PAFIRRLHDIAVKVGTRARL--LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 300
            +      D+ V      +L       S   ++ +F   +T             + +R  
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIA 360
             +    + +    V R D G Y+   S E G +  +  + +   VP  P+        +
Sbjct: 62  FSS----SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVP--PSKPTISVPSS 115

Query: 361 VKVGTRARLL-VEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID--------LSS 411
           V +G RA L   E       +  W+++   +      +T+   N  F             
Sbjct: 116 VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDP 175

Query: 412 VSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
           V+ FDSG + C A+N  G +  S    +   
Sbjct: 176 VTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV 206

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 95.0 bits (236), Expect = 3e-22
 Identities = 34/222 (15%), Positives = 58/222 (26%), Gaps = 46/222 (20%)

Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEE-----------LKPGDVYQ 698
           K     +   V   +   +   C   GF +P ++W                   P     
Sbjct: 1   KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60

Query: 699 LTGTSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKA 748
              +S +          G Y C+     G+      +                 LT    
Sbjct: 61  TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIH----------------LTVLVP 104

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKETLGVCH- 806
           P           T+      T      SP  + SWF+D   ++ +D  K           
Sbjct: 105 PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 164

Query: 807 ------LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
                 L    +   D  E+ C A N +G ++ S    ++  
Sbjct: 165 DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV 206

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 83.9 bits (207), Expect = 2e-18
 Identities = 40/229 (17%), Positives = 69/229 (30%), Gaps = 49/229 (21%)

Query: 446 KAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPK----- 500
           K   +T + +  + E  ++ L C   G  +P++ W        A   +            
Sbjct: 1   KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60

Query: 501 --DPSSL----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPG 548
               S +          G YTC      G  +    +             VP        
Sbjct: 61  TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL--------VP-------- 104

Query: 549 PAPIFIKEVENVKAKIGTSAILECQVL--VPPWPRSIYWYNKEGV-VEASDKYHIMADGL 605
             P            IG  A+L C      PP      W+ K+G+ +  +D     A   
Sbjct: 105 --PSKPTISVPSSVTIGNRAVLTCSEHDGSPP-S-EYSWF-KDGISMLTADAKKTRAFMN 159

Query: 606 GGYSIE-------INYLEAVDDGEWKCVATSSSGVKQFSA-AYVHVLMP 646
             ++I+        + + A D GE+ C A +  G    S  A++  +  
Sbjct: 160 SSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVEL 208

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 83.5 bits (206), Expect = 3e-18
 Identities = 35/216 (16%), Positives = 68/216 (31%), Gaps = 11/216 (5%)

Query: 136 PAFIRRLHDIAVKVGTRARL--LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 193
            +      D+ V      +L       S   ++ +F   +T             + +R  
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 194 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIA 253
             +    + +    V R D G Y+   S E G +  +  + +   VP  P+        +
Sbjct: 62  FSS----SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVP--PSKPTISVPSS 115

Query: 254 VKVGTRARLL-VEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNI 312
           V +G RA L   E       +  +  +     +  A+       + F    + G  +L  
Sbjct: 116 VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSG--DLIF 173

Query: 313 RRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 348
             V   D G Y   A N  G +       +++   +
Sbjct: 174 DPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELN 209

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 79.2 bits (195), Expect = 1e-16
 Identities = 29/179 (16%), Positives = 51/179 (28%), Gaps = 7/179 (3%)

Query: 64  LDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK 123
                                 R         +    V R D G Y+   S E G +  +
Sbjct: 37  FVQGSTTALVCYNSQITAPYADRVTFSSS--GITFSSVTRKDNGEYTCMVSEEGGQNYGE 94

Query: 124 FELSVESQVPDAPAFIRRLHDIAVKVGTRARLL-VEIRSPTEIKCQFDLNNTIPFSFRAQ 182
             + +   VP  P+        +V +G RA L   E       +  +  +     +  A+
Sbjct: 95  VSIHLTVLVP--PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAK 152

Query: 183 GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 241
                  + F    + G  +L    V   D G Y   A N  G +       +++   +
Sbjct: 153 KTRAFMNSSFTIDPKSG--DLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELN 209

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 56.9 bits (137), Expect = 4e-09
 Identities = 24/185 (12%), Positives = 44/185 (23%), Gaps = 54/185 (29%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPK-------DPSSL----------GTYTCEAVN 44
           G  +P++ W        A   +                S +          G YTC    
Sbjct: 27  GFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSE 86

Query: 45  CMGAAFSTSRV------------------IARGQQSFL-----------------DNDDV 69
             G  +    +                  +  G ++ L                 D   +
Sbjct: 87  EGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISM 146

Query: 70  PFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
               A+       + F    + G  +L    V   D G Y   A N  G +       ++
Sbjct: 147 LTADAKKTRAFMNSSFTIDPKSG--DLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 204

Query: 130 SQVPD 134
           +   +
Sbjct: 205 AVELN 209

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 14/97 (14%), Positives = 23/97 (23%), Gaps = 18/97 (18%)

Query: 847 KPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKA---------GDIHKII 896
           K         V + E  ++ L C   G   P ++W        A               +
Sbjct: 1   KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60

Query: 897 SGEDGTCCL--------GIYTCEAHNCMGTTSSSAAL 925
           +                G YTC      G      ++
Sbjct: 61  TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSI 97

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score =  102 bits (256), Expect = 7e-24
 Identities = 48/334 (14%), Positives = 95/334 (28%), Gaps = 65/334 (19%)

Query: 547 PGPAPIFIKEVENVKAKIGTSAILECQVLVPPWP---RSIYWYNKEGVV----------- 592
                  ++  +++   IGT  +L C    P        + W                  
Sbjct: 11  GRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSM 70

Query: 593 ------EASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLM- 645
                    ++   +       +I ++ LE  D+G + C   +     + S   + V+  
Sbjct: 71  GVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAK 130

Query: 646 PKNYRKPRFVESLKAVMTDDGLVSFECKVV-GFPTPTLQWFKDNEELKPGDVYQ-----L 699
           P N+ +            DD ++   C    G P   + W    +        +     +
Sbjct: 131 PTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTV 190

Query: 700 TGTSSL----------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAP 749
           T  S             S  C+    M + + S  L ++                    P
Sbjct: 191 TVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQY------------------EP 232

Query: 750 KF-IEGLKSCQATVNEEFKFTVQVSISPEP-KVSWFRDDQQVVESDNVKILKETLGVCHL 807
           +  IEG          + K T +   +P   +  W   +  +     V+    TL     
Sbjct: 233 EVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSL--PKGVEAQNRTL----F 286

Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
               +  +    + C ATN  G    S  +++N+
Sbjct: 287 FKGPINYSLAGTYICEATNPIGT--RSGQVEVNI 318

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score =  101 bits (252), Expect = 3e-23
 Identities = 39/335 (11%), Positives = 85/335 (25%), Gaps = 35/335 (10%)

Query: 126 LSVESQVPDAPA-FIRRLHDIAVKVGTRARLLVEIRSPTE---------IKCQFDLNNTI 175
           ++   Q+   P+  ++    +   +GT   L     +P            K        +
Sbjct: 4   MTGGQQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNV 63

Query: 176 PFSFRAQGDH--PIFGNRFRAIN-RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFE 232
                + G      +  R   +        + + R+  +D G Y    +    + T   E
Sbjct: 64  AIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFAT---FPTGNRE 120

Query: 233 LSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIP-FSFRAQGD 291
             +   V   P          ++         +        C           S+  +  
Sbjct: 121 SQLNLTVMAKPTNWIEGTQAVLRAKK-----GQDDKVLVATCTSANGKPPSVVSWETRLK 175

Query: 292 HPIFGNRFRAINRDGRT--ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 349
                   R  N          +   R       +   +           L+V  Q    
Sbjct: 176 GEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNV--QYE-- 231

Query: 350 PAF-IRRLHDIAVKVGTRARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
           P   I              +L  +  + P   + HW   +  L +    +   +   +F 
Sbjct: 232 PEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQ---NRTLFFK 288

Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
               ++   +G + C A N +G      E+++   
Sbjct: 289 --GPINYSLAGTYICEATNPIGTRSGQVEVNITEA 321

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 94.4 bits (234), Expect = 6e-21
 Identities = 47/315 (14%), Positives = 83/315 (26%), Gaps = 36/315 (11%)

Query: 233 LSVESQVPDAPA-FIRRLHDIAVKVGTRARLLVEIRSPTE---------IKCQFDLNNTI 282
           ++   Q+   P+  ++    +   +GT   L     +P            K        +
Sbjct: 4   MTGGQQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNV 63

Query: 283 PFSFRAQGDH--PIFGNRFRAIN-RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFE 339
                + G      +  R   +        + + R+  +D G Y    +    + T   E
Sbjct: 64  AIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFAT---FPTGNRE 120

Query: 340 LSVESQVPDAPAFIRRLHDIAVKVGTRARL-LVEIR-----SPTEIKIHWYRNDRKLEEN 393
             +   V   P          ++        ++              + W    +   E 
Sbjct: 121 SQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEY 180

Query: 394 KIYRTQHDGNFYF--IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFT 451
           +  R  +          L            C+    + R   S  L+V        P  T
Sbjct: 181 QEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYE-----PEVT 235

Query: 452 KELE--AILTEQGTVSLECKVMGIPTPQLI-WYKDNKKIKAGDIFA----LTANPKDPSS 504
            E        ++  V L CK    P      W   N  +  G            P + S 
Sbjct: 236 IEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSL 295

Query: 505 LGTYTCEAVNCMGAA 519
            GTY CEA N +G  
Sbjct: 296 AGTYICEATNPIGTR 310

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 88.3 bits (218), Expect = 6e-19
 Identities = 59/328 (17%), Positives = 88/328 (26%), Gaps = 72/328 (21%)

Query: 648 NYRKPRFVESLKAVMTDDGL-VSFECKVVGFPTP----TLQWFKDNEELKP--------- 693
                + V+   ++    G  V   C             + W K     K          
Sbjct: 11  GRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSM 70

Query: 694 --------GDVYQLTGTS----SL----------GSYCC-VAKNVMGKAESSTQLTI-ED 729
                    +  +    S    ++          G Y C  A    G  ES   LT+   
Sbjct: 71  GVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAK 130

Query: 730 IRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQV 789
             N +     +L     +  K +    +C +               P   VSW    +  
Sbjct: 131 PTNWIEGTQAVLRAKKGQDDKVLV--ATCTSANG-----------KPPSVVSWETRLKGE 177

Query: 790 VESDNVKILKETLGVC-HLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKP 848
            E   ++    T+ V    ++     A Q    CI      +   S  L LNV   Y+ P
Sbjct: 178 AEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKES--LTLNV--QYE-P 232

Query: 849 KFLEELK--AVLSEGGAVNLECKVIGVPQPT-LKWFKDGRELKAGD--------IHKIIS 897
           +   E        +   V L CK    P  T   W      L  G             I+
Sbjct: 233 EVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPIN 292

Query: 898 GEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
                   G Y CEA N +GT S    +
Sbjct: 293 YSLA----GTYICEATNPIGTRSGQVEV 316

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 80.9 bits (199), Expect = 2e-16
 Identities = 45/332 (13%), Positives = 75/332 (22%), Gaps = 68/332 (20%)

Query: 444 AYKAPFFTKELEAILTEQG-TVSLECKVMGIPTP----QLIWYKDNKKIKAGDI------ 492
                   +  +++    G  V L C            Q+ W K     K          
Sbjct: 11  GRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSM 70

Query: 493 -----------FALTANPKDPSSL----------GTYTCEAVNCMGAAFSTSRVIARGQQ 531
                                 ++          G Y CE        F+T     R  Q
Sbjct: 71  GVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICE--------FATFPTGNRESQ 122

Query: 532 SFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEG 590
             L     P N +            +   K +     +  C       P  + W    +G
Sbjct: 123 LNLTVMAKPTNWIEGTQA------VLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKG 176

Query: 591 VVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYR 650
             E  +  +            +            C+        +  +  ++V       
Sbjct: 177 EAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFK-ESLTLNVQYE---- 231

Query: 651 KPRF-VESLKAVMTDDG-LVSFECKVVGFPTPT-LQWFKDNEELKPGDVYQLTGTSSL-- 705
            P   +E            V   CK    P  T   W   N  L  G   +    +    
Sbjct: 232 -PEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG--VEAQNRTLFFK 288

Query: 706 --------GSYCCVAKNVMGKAESSTQLTIED 729
                   G+Y C A N +G      ++ I +
Sbjct: 289 GPINYSLAGTYICEATNPIGTRSGQVEVNITE 320

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 79.0 bits (194), Expect = 9e-16
 Identities = 34/287 (11%), Positives = 66/287 (22%), Gaps = 37/287 (12%)

Query: 78  HPIFGNRFRAIN-RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 136
              +  R   +        + + R+  +D G Y    +    + T   E  +   V   P
Sbjct: 75  LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFAT---FPTGNRESQLNLTVMAKP 131

Query: 137 AFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIP-FSFRAQGDHPIFGNRFRAI 195
                     ++         +        C           S+  +          R  
Sbjct: 132 TNWIEGTQAVLRAKK-----GQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNP 186

Query: 196 NRDGRT--ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAF-IRRLHDI 252
           N          +   R       +   +           L+V  Q    P   I      
Sbjct: 187 NGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNV--QYE--PEVTIEGFDGN 242

Query: 253 AVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFR-AQGDHPIFGNRFRAINRDGRTELN 311
                   +L           C+ D N      +     +  +       +    RT   
Sbjct: 243 WYLQRMDVKL----------TCKADANPP-ATEYHWTTLNGSLPKG----VEAQNRTLFF 287

Query: 312 IRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 358
              +     G Y   A+N  G  + + E+++     +A A     H 
Sbjct: 288 KGPINYSLAGTYICEATNPIGTRSGQVEVNIT----EAAALEHHHHH 330

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 47.8 bits (113), Expect = 1e-05
 Identities = 24/173 (13%), Positives = 43/173 (24%), Gaps = 34/173 (19%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFA-----------LTANPKDPSSLGTYTCEAVNCMGAAF 50
           G P   + W    K                        P   +   +  C     M    
Sbjct: 162 GKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFK 221

Query: 51  STSR----------VIARGQQSFLDNDDVPFN-RAQGDHPIF--------GNRFRAINRD 91
            +            +       +L   DV    +A  + P          G+  + +   
Sbjct: 222 ESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQ 281

Query: 92  GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 144
            RT      +     G Y   A+N  G  + + E+++     +A A     H 
Sbjct: 282 NRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT----EAAALEHHHHH 330

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 95.1 bits (237), Expect = 2e-23
 Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 1/96 (1%)

Query: 743 LTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETL 802
            T + AP+    ++S +    +  +F + V   P  +V W+ +  ++ ES  +     + 
Sbjct: 3   FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTS- 61

Query: 803 GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
           GV  L+I      D   ++ + TN  G++     L 
Sbjct: 62  GVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLD 97

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 90.4 bits (225), Expect = 7e-22
 Identities = 18/91 (19%), Positives = 27/91 (29%), Gaps = 12/91 (13%)

Query: 846 KKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC 904
             P+    ++   +  G        V   P   +KW+ +G EL+        +   G   
Sbjct: 7   HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTN-TSGVLT 65

Query: 905 L----------GIYTCEAHNCMGTTSSSAAL 925
           L          G Y     N  G  S  A L
Sbjct: 66  LEILDCHTDDSGTYRAVCTNYKGEASDYATL 96

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 89.7 bits (223), Expect = 1e-21
 Identities = 19/95 (20%), Positives = 37/95 (38%)

Query: 345 QVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNF 404
            +  AP    R+    V  G   R ++ ++S    ++ WY N  +L+E+      +    
Sbjct: 4   TLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGV 63

Query: 405 YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
             +++      DSG +  +  N  G +     L V
Sbjct: 64  LTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDV 98

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 87.0 bits (216), Expect = 1e-20
 Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 14/94 (14%)

Query: 650 RKPRFVESLKAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL 705
             PR    +++     G    F   V   PT  ++W+ +  EL+       T   G  +L
Sbjct: 7   HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTL 66

Query: 706 ----------GSYCCVAKNVMGKAESSTQLTIED 729
                     G+Y  V  N  G+A     L +  
Sbjct: 67  EILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 77.3 bits (191), Expect = 3e-17
 Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 12/95 (12%)

Query: 446 KAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSS 504
            AP  T  + +     G        V   PT ++ WY +  +++       T N     +
Sbjct: 7   HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYT-NTSGVLT 65

Query: 505 L----------GTYTCEAVNCMGAAFSTSRVIARG 529
           L          GTY     N  G A   + +   G
Sbjct: 66  LEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 67.7 bits (166), Expect = 7e-14
 Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 16/109 (14%)

Query: 131 QVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF 188
            +  AP    R+    V  G   R ++ ++  PT E+K   +                + 
Sbjct: 4   TLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHN-------------GVELQ 50

Query: 189 GN-RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
            + +    N  G   L I     DD G Y    +N  G ++    L V 
Sbjct: 51  ESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 67.7 bits (166), Expect = 7e-14
 Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 16/109 (14%)

Query: 238 QVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF 295
            +  AP    R+    V  G   R ++ ++  PT E+K   +                + 
Sbjct: 4   TLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHN-------------GVELQ 50

Query: 296 GN-RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
            + +    N  G   L I     DD G Y    +N  G ++    L V 
Sbjct: 51  ESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 65.0 bits (159), Expect = 5e-13
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGGY 608
           AP     + + +   G +      V   P    + WY   GV ++ S K H      G  
Sbjct: 8   APRITLRMRSHRVPCGQNTRFILNVQSKPTAE-VKWY-HNGVELQESSKIHYTNTS-GVL 64

Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
           ++EI      D G ++ V T+  G +    A + V
Sbjct: 65  TLEILDCHTDDSGTYRAVCTNYKG-EASDYATLDV 98

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 11/68 (16%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
             PT ++ WY +  +++       T N     +L          GTY     N  G A  
Sbjct: 34  SKPTAEVKWYHNGVELQESSKIHYT-NTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASD 92

Query: 52  TSRVIARG 59
            + +   G
Sbjct: 93  YATLDVTG 100

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 1/54 (1%)

Query: 77  DHPIFGN-RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
              +  + +    N  G   L I     DD G Y    +N  G ++    L V 
Sbjct: 46  GVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 95.1 bits (237), Expect = 2e-23
 Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 11/90 (12%)

Query: 847 KPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL 905
           +P FL+    + + EG    ++CKV G+P P L W  DG+ ++    HK++  E+G   L
Sbjct: 9   RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSL 68

Query: 906 ----------GIYTCEAHNCMGTTSSSAAL 925
                     GIYTC A N  G  S S  L
Sbjct: 69  IIEPVTSRDAGIYTCIATNRAGQNSFSLEL 98

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 90.1 bits (224), Expect = 1e-21
 Identities = 26/99 (26%), Positives = 40/99 (40%)

Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLG 803
           ++   P F++          +  +   +VS  P P +SW  D + V      K+L    G
Sbjct: 5   SSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENG 64

Query: 804 VCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
           V  L I  +   D   + CIATN  GQ+  S  L +   
Sbjct: 65  VHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK 103

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 82.8 bits (205), Expect = 4e-19
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 15/94 (15%)

Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT----GTSSL 705
           +P F+++   +   +G L   +CKV G PTP L W  D + ++P   +++     G  SL
Sbjct: 9   RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSL 68

Query: 706 ----------GSYCCVAKNVMGKAESSTQLTIED 729
                     G Y C+A N  G+   S +L +  
Sbjct: 69  IIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAA 102

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 77.8 bits (192), Expect = 2e-17
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 11/96 (11%)

Query: 442 PKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPK 500
             +   P F +    +  ++G    ++CKV G+PTP L W  D K ++      +     
Sbjct: 4   GSSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVREN 63

Query: 501 DPSSL----------GTYTCEAVNCMGAAFSTSRVI 526
              SL          G YTC A N  G    +  ++
Sbjct: 64  GVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELV 99

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 76.6 bits (189), Expect = 5e-17
 Identities = 20/98 (20%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIR---SPTEIKIHWYRNDRKLEENKIYR-TQHDGNF 404
            P F++   D+ V+ G   R+  ++    +P    + W  + + +  +  ++    +   
Sbjct: 9   RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPD---LSWQLDGKPVRPDSAHKMLVRENGV 65

Query: 405 YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
           + + +  V+  D+G +TC+A N  G++  S EL V   
Sbjct: 66  HSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK 103

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 72.0 bits (177), Expect = 2e-15
 Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 2/99 (2%)

Query: 548 GPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGG 607
           G  P F++   ++  + G    ++C+V   P P  + W      V     + ++    G 
Sbjct: 7   GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTP-DLSWQLDGKPVRPDSAHKMLVRENGV 65

Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
           +S+ I  + + D G + C+AT+ +G   FS   + V   
Sbjct: 66  HSLIIEPVTSRDAGIYTCIATNRAGQNSFS-LELVVAAK 103

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 18/114 (15%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
            P F++   D+ V+ G   R+  ++   PT ++  Q D               P+  +  
Sbjct: 9   RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLD-------------GKPVRPDSA 55

Query: 193 RAI--NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA 244
             +    +G   L I  V   D G Y+  A+N +G ++   EL V ++    P+
Sbjct: 56  HKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK-ESGPS 108

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 18/114 (15%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 299
            P F++   D+ V+ G   R+  ++   PT ++  Q D               P+  +  
Sbjct: 9   RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLD-------------GKPVRPDSA 55

Query: 300 RAI--NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA 351
             +    +G   L I  V   D G Y+  A+N +G ++   EL V ++    P+
Sbjct: 56  HKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK-ESGPS 108

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 10/65 (15%)

Query: 2  GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
          G+PTP L W  D K ++      +        SL          G YTC A N  G    
Sbjct: 35 GLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSF 94

Query: 52 TSRVI 56
          +  ++
Sbjct: 95 SLELV 99

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 77  DHPIFGNRFRAI--NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 134
             P+  +    +    +G   L I  V   D G Y+  A+N +G ++   EL V ++   
Sbjct: 47  GKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK-ES 105

Query: 135 APA 137
            P+
Sbjct: 106 GPS 108

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 94.7 bits (236), Expect = 2e-23
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 11/89 (12%)

Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL- 905
           P+F++  + + + EG    ++ KV G+P P + W+ +GR +++ D+HK+I  E G   L 
Sbjct: 6   PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65

Query: 906 ---------GIYTCEAHNCMGTTSSSAAL 925
                    G Y C A N  G  + +  L
Sbjct: 66  FEVVRASDAGAYACVAKNRAGEATFTVQL 94

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 89.7 bits (223), Expect = 1e-21
 Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 2/94 (2%)

Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
            P+FI+  ++         +   +VS  P P VSW+ + + V   D  K++    G+  L
Sbjct: 5   PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64

Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
               +  +D   + C+A N  G++  +   +L+V
Sbjct: 65  IFEVVRASDAGAYACVAKNRAGEATFTV--QLDV 96

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 83.9 bits (208), Expect = 1e-19
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 15/92 (16%)

Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT----GTSSL- 705
           PRF++  + +  D+G     + KV G P P + W+ +   ++  D++++     G  SL 
Sbjct: 6   PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65

Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIE 728
                    G+Y CVAKN  G+A  + QL + 
Sbjct: 66  FEVVRASDAGAYACVAKNRAGEATFTVQLDVL 97

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 80.8 bits (200), Expect = 2e-18
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 13/98 (13%)

Query: 444 AYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDP 502
           A   P F +  E +  ++G    ++ KV G+P P + WY + + +++ D+  +  + K  
Sbjct: 2   AMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL 61

Query: 503 SSL----------GTYTCEAVNCMGAAFSTSR--VIAR 528
            SL          G Y C A N  G A  T +  V+A+
Sbjct: 62  HSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 78.9 bits (195), Expect = 7e-18
 Identities = 20/95 (21%), Positives = 45/95 (47%), Gaps = 3/95 (3%)

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYR-TQHDGNFYF 406
            P FI+   ++++  G   R+  ++   P    + WY N R ++ + +++    +   + 
Sbjct: 5   PPRFIQVPENMSIDEGRFCRMDFKVSGLP-APDVSWYLNGRTVQSDDLHKMIVSEKGLHS 63

Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV 441
           +    V   D+G + C+A+N  G +  + +L VL 
Sbjct: 64  LIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 72.4 bits (178), Expect = 1e-15
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 1/89 (1%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
            P FI+  EN+    G    ++ +V   P P  + WY     V++ D + ++    G +S
Sbjct: 5   PPRFIQVPENMSIDEGRFCRMDFKVSGLPAP-DVSWYLNGRTVQSDDLHKMIVSEKGLHS 63

Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSA 638
           +    + A D G + CVA + +G   F+ 
Sbjct: 64  LIFEVVRASDAGAYACVAKNRAGEATFTV 92

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 62.3 bits (152), Expect = 5e-12
 Identities = 19/108 (17%), Positives = 40/108 (37%), Gaps = 17/108 (15%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
            P FI+   ++++  G   R+  ++   P  ++    +                +  +  
Sbjct: 5   PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLN-------------GRTVQSDDL 51

Query: 193 RAI--NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 238
             +  +  G   L    VR  D G Y+  A N +G +T   +L V ++
Sbjct: 52  HKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 62.3 bits (152), Expect = 5e-12
 Identities = 19/108 (17%), Positives = 40/108 (37%), Gaps = 17/108 (15%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRF 299
            P FI+   ++++  G   R+  ++   P  ++    +                +  +  
Sbjct: 5   PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLN-------------GRTVQSDDL 51

Query: 300 RAI--NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
             +  +  G   L    VR  D G Y+  A N +G +T   +L V ++
Sbjct: 52  HKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 12/69 (17%)

Query: 2  GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
          G+P P + WY + + +++ D+  +  + K   SL          G Y C A N  G A  
Sbjct: 31 GLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATF 90

Query: 52 TSR--VIAR 58
          T +  V+A+
Sbjct: 91 TVQLDVLAK 99

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 77  DHPIFGNRFRAI--NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 131
              +  +    +  +  G   L    VR  D G Y+  A N +G +T   +L V ++
Sbjct: 43  GRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 93.9 bits (234), Expect = 4e-23
 Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 11/91 (12%)

Query: 846 KKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC 904
             P F   L    + EG  V +  +V G P+P + W ++ + ++          E G C 
Sbjct: 4   APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63

Query: 905 L----------GIYTCEAHNCMGTTSSSAAL 925
           L          G YTC+A N  G     A L
Sbjct: 64  LRILAAERGDAGFYTCKAVNEYGARQCEARL 94

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 93.1 bits (232), Expect = 7e-23
 Identities = 24/94 (25%), Positives = 39/94 (41%)

Query: 745 NNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGV 804
           +   P F   L        ++   +++V   P+P VSW R+ Q V         +   G+
Sbjct: 2   SKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGL 61

Query: 805 CHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
           C L+I A E  D   + C A N++G       L+
Sbjct: 62  CRLRILAAERGDAGFYTCKAVNEYGARQCEARLE 95

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 86.6 bits (215), Expect = 2e-20
 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 344 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEEN-KIYRTQHD 401
           S+ P  P F   L D +V+ G    + + ++  P +  + W RN + +  + + +  + +
Sbjct: 2   SKAP--PTFKVSLMDQSVREGQDVIMSIRVQGEP-KPVVSWLRNRQPVRPDQRRFAEEAE 58

Query: 402 GNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
           G    + + +    D+G +TC A N  G   C   L V
Sbjct: 59  GGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 81.2 bits (201), Expect = 1e-18
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 15/94 (15%)

Query: 650 RKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT----GTSS 704
             P F  SL      +G  V    +V G P P + W ++ + ++P           G   
Sbjct: 4   APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63

Query: 705 L----------GSYCCVAKNVMGKAESSTQLTIE 728
           L          G Y C A N  G  +   +L + 
Sbjct: 64  LRILAAERGDAGFYTCKAVNEYGARQCEARLEVR 97

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 80.0 bits (198), Expect = 3e-18
 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 11/96 (11%)

Query: 446 KAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSS 504
             P F   L      +G  V +  +V G P P + W ++ + ++                
Sbjct: 4   APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63

Query: 505 L----------GTYTCEAVNCMGAAFSTSRVIARGQ 530
           L          G YTC+AVN  GA    +R+  RG+
Sbjct: 64  LRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 65.4 bits (160), Expect = 4e-13
 Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGGY 608
            P F   + +   + G   I+  +V   P P  + W  +    V    +        G  
Sbjct: 5   PPTFKVSLMDQSVREGQDVIMSIRVQGEPKP-VVSWL-RNRQPVRPDQRRFAEEAEGGLC 62

Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSA 638
            + I   E  D G + C A +  G +Q  A
Sbjct: 63  RLRILAAERGDAGFYTCKAVNEYGARQCEA 92

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 63.8 bits (156), Expect = 1e-12
 Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 19/113 (16%)

Query: 130 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPI 187
           S+ P  P F   L D +V+ G    + + ++  P   +    +               P+
Sbjct: 2   SKAP--PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRN-------------RQPV 46

Query: 188 FGN--RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 238
             +  RF      G   L I    R D G Y+  A NE G    +  L V  +
Sbjct: 47  RPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 63.8 bits (156), Expect = 1e-12
 Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 19/113 (16%)

Query: 237 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPI 294
           S+ P  P F   L D +V+ G    + + ++  P   +    +               P+
Sbjct: 2   SKAP--PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRN-------------RQPV 46

Query: 295 FGN--RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
             +  RF      G   L I    R D G Y+  A NE G    +  L V  +
Sbjct: 47  RPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 56.9 bits (138), Expect = 3e-10
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 10/69 (14%)

Query: 2  GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
          G P P + W ++ + ++                L          G YTC+AVN  GA   
Sbjct: 31 GEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQC 90

Query: 52 TSRVIARGQ 60
           +R+  RG+
Sbjct: 91 EARLEVRGE 99

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 77  DHPIFGN--RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 131
             P+  +  RF      G   L I    R D G Y+  A NE G    +  L V  +
Sbjct: 43  RQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 98.8 bits (246), Expect = 6e-23
 Identities = 32/238 (13%), Positives = 62/238 (26%), Gaps = 40/238 (16%)

Query: 304 RDGRT------ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 357
            +G           I     +D G Y             + E+     +    + +    
Sbjct: 38  LNGTATQTSTPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRV---- 93

Query: 358 DIAVKVGTRARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFD 416
                 G    L            + +YRN +  +         + N         ++  
Sbjct: 94  ---FTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF-----HWNSNLTI---LKTNISH 142

Query: 417 SGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTP 476
           +G + C        +     ++V     + AP     + + L E   V+L C+   +   
Sbjct: 143 NGTYHCSGMGKHRYTSAGISVTVKEL--FPAPVLNASVTSPLLEGNLVTLSCETKLLLQR 200

Query: 477 -----QLIWYKDNKKIKAGD------IFALTANPKDPSSLGTYTCEAVNCMGAAFSTS 523
                   +Y  +K ++  +      I             G Y CEA    G     S
Sbjct: 201 PGLQLYFSFYMGSKTLRGRNTSSEYQILTAR-----REDSGLYWCEAATEDGNVLKRS 253

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 96.1 bits (239), Expect = 4e-22
 Identities = 46/278 (16%), Positives = 82/278 (29%), Gaps = 59/278 (21%)

Query: 668 VSFECKVVGFPTP-TLQWFKDNEELKP-GDVYQLTGTSS--LGSYCCVAKNVMGKAE--- 720
           V+  C+V+  P   + QWF +    +     Y++T  S    G Y C             
Sbjct: 19  VTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYRITSASVNDSGEYRCQRGLSGRSDPIQL 78

Query: 721 --SSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEP 778
                 L ++      +E + L L               C A  +               
Sbjct: 79  EIHRGWLLLQVSSRVFTEGEPLAL--------------RCHAWKD-----------KLVY 113

Query: 779 KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
            V ++R+ +          L          I    ++    + C          TS  + 
Sbjct: 114 NVLYYRNGKAFKFFHWNSNLT---------ILKTNISHNGTYHCSGMGKHRY--TSAGIS 162

Query: 839 LNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQP-----TLKWFKDGRELKA---G 890
           + V + +  P     + + L EG  V L C+   + Q         ++   + L+     
Sbjct: 163 VTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTS 222

Query: 891 DIHKI--ISGEDGTCCLGIYTCEAHNCMGTTSSSAALL 926
             ++I     ED     G+Y CEA    G     +  L
Sbjct: 223 SEYQILTARREDS----GLYWCEAATEDGNVLKRSPEL 256

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 91.5 bits (227), Expect = 2e-20
 Identities = 39/277 (14%), Positives = 78/277 (28%), Gaps = 48/277 (17%)

Query: 463 TVSLECKVMGIPTPQLI-WYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFS 521
           TV+L C+V+ +P      W+ +    +     +        +  G Y C+          
Sbjct: 18  TVTLHCEVLHLPGSSSTQWFLNGTATQTST-PSYRITSASVNDSGEYRCQRGL------- 69

Query: 522 TSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPR 581
                    +S    D +              + +V +     G    L C         
Sbjct: 70  -------SGRS----DPIQLEIHRGW-----LLLQVSSRVFTEGEPLALRCHAWKDKLVY 113

Query: 582 SIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYV 641
           ++ +Y + G                  ++ I       +G + C           +   V
Sbjct: 114 NVLYY-RNGKA-------FKFFHWNS-NLTILKTNISHNGTYHCSGMGKHRYTS-AGISV 163

Query: 642 HVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFP---TPTLQW--FKDNEELKP--- 693
            V     +  P    S+ + + +  LV+  C+           L +  +  ++ L+    
Sbjct: 164 TVKEL--FPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNT 221

Query: 694 GDVYQLT--GTSSLGSYCCVAKNVMGKAES-STQLTI 727
              YQ+        G Y C A    G     S +L +
Sbjct: 222 SSEYQILTARREDSGLYWCEAATEDGNVLKRSPELEL 258

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 90.7 bits (225), Expect = 3e-20
 Identities = 37/304 (12%), Positives = 85/304 (27%), Gaps = 58/304 (19%)

Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMADGLGGYS 609
            +   +   V      +  L C+VL  P   S  W+ N      ++  Y I        S
Sbjct: 2   AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYRI-------TS 54

Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVS 669
             +N     D GE++C    S          + +           ++    V T+   ++
Sbjct: 55  ASVN-----DSGEYRCQRGLSGRSD---PIQLEIHRG-----WLLLQVSSRVFTEGEPLA 101

Query: 670 FECKVV-GFPTPTLQWFKDNEELKP---GDVYQLTGTSS--LGSYCCVAKNVMGKAESST 723
             C          + ++++ +  K         +  T+    G+Y C          +  
Sbjct: 102 LRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGI 161

Query: 724 QLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEP----- 778
            +T++++                     +    +           + +  +  +      
Sbjct: 162 SVTVKEL----------------FPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQL 205

Query: 779 KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT-SCFL 837
             S++   + +   +              +I      D   + C A  + G  +  S  L
Sbjct: 206 YFSFYMGSKTLRGRNTSS---------EYQILTARREDSGLYWCEAATEDGNVLKRSPEL 256

Query: 838 KLNV 841
           +L V
Sbjct: 257 ELQV 260

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 89.2 bits (221), Expect = 1e-19
 Identities = 38/277 (13%), Positives = 77/277 (27%), Gaps = 50/277 (18%)

Query: 375 SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCS 434
            P      W+ N    + +         ++    ++S S+ DSG + C        S  S
Sbjct: 28  LPGSSSTQWFLNGTATQTS-------TPSYR---ITSASVNDSGEYRCQRGL----SGRS 73

Query: 435 CELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVM-GIPTPQLIWYKDNKKIKA---- 489
             + + +   ++     +    + TE   ++L C          +++Y++ K  K     
Sbjct: 74  DPIQLEI---HRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWN 130

Query: 490 GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGP 549
            ++  L  N       GTY C  +       +   V  +                     
Sbjct: 131 SNLTILKTNISH---NGTYHCSGMGKHRYTSAGISVTVKEL------------------F 169

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
               +          G    L C+  +      +  Y             +         
Sbjct: 170 PAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFY----MGSKTLRGRNTSS-E 224

Query: 610 IEINYLEAVDDGEWKCVATSSSG--VKQFSAAYVHVL 644
            +I      D G + C A +  G  +K+     + VL
Sbjct: 225 YQILTARREDSGLYWCEAATEDGNVLKRSPELELQVL 261

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 88.8 bits (220), Expect = 1e-19
 Identities = 35/257 (13%), Positives = 69/257 (26%), Gaps = 46/257 (17%)

Query: 197 RDGRT------ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 250
            +G           I     +D G Y             + E+     +    + +    
Sbjct: 38  LNGTATQTSTPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRV---- 93

Query: 251 DIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTEL 310
                 G           P  ++C    +  +      +                  + L
Sbjct: 94  ---FTEG----------EPLALRCHAWKDKLVYNVLYYRNGKAFKFFH-------WNSNL 133

Query: 311 NIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL- 369
            I +      G Y  +   +  Y++A   ++V  +       +       +  G    L 
Sbjct: 134 TILKTNISHNGTYHCSGMGKHRYTSAGISVTV--KELFPAPVLNASVTSPLLEGNLVTLS 191

Query: 370 ----LVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAE 425
               L+  R   ++   +Y   + L      R ++  + Y I   +    DSG + C A 
Sbjct: 192 CETKLLLQRPGLQLYFSFYMGSKTL------RGRNTSSEYQI--LTARREDSGLYWCEAA 243

Query: 426 NAVGR-SHCSCELSVLV 441
              G     S EL + V
Sbjct: 244 TEDGNVLKRSPELELQV 260

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 80.3 bits (198), Expect = 1e-16
 Identities = 38/259 (14%), Positives = 76/259 (29%), Gaps = 48/259 (18%)

Query: 2   GIPTPQLI-WYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAA------FSTSR 54
            +P      W+ +    +     +        +  G Y C+      +            
Sbjct: 27  HLPGSSSTQWFLNGTATQTST-PSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWL 85

Query: 55  VIARGQQSFLDNDDVPFN-RAQGDHPIFGNRFRAINRDGRT--------ELNIRRVRRDD 105
           ++    + F + + +     A  D  ++   +    R+G+          L I +     
Sbjct: 86  LLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYY---RNGKAFKFFHWNSNLTILKTNISH 142

Query: 106 GGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEI 165
            G Y  +   +  Y++A   ++V  +       +       +  G    L          
Sbjct: 143 NGTYHCSGMGKHRYTSAGISVTV--KELFPAPVLNASVTSPLLEGNLVTL---------- 190

Query: 166 KCQFDLNNTIP-----FSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTA 220
            C+  L    P     FSF        +        R+  +E  I   RR+D G Y   A
Sbjct: 191 SCETKLLLQRPGLQLYFSF--------YMGSKTLRGRNTSSEYQILTARREDSGLYWCEA 242

Query: 221 SNESGYSTAKFELSVESQV 239
           + E G    +   S E ++
Sbjct: 243 ATEDGNVLKR---SPELEL 258

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 76.1 bits (187), Expect = 3e-15
 Identities = 37/268 (13%), Positives = 69/268 (25%), Gaps = 58/268 (21%)

Query: 90  RDGRT------ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 143
            +G           I     +D G Y             + E+     +    + +    
Sbjct: 38  LNGTATQTSTPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRV---- 93

Query: 144 DIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTEL 203
                 G           P  ++C    +  +      +                  + L
Sbjct: 94  ---FTEG----------EPLALRCHAWKDKLVYNVLYYRNGKAFKFFH-------WNSNL 133

Query: 204 NIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLL 263
            I +      G Y  +   +  Y++A   ++V  +       +       +  G    L 
Sbjct: 134 TILKTNISHNGTYHCSGMGKHRYTSAGISVTV--KELFPAPVLNASVTSPLLEGNLVTL- 190

Query: 264 VEIRSPTEIKCQFDLNNTIP-----FSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRD 318
                     C+  L    P     FSF        +        R+  +E  I   RR+
Sbjct: 191 ---------SCETKLLLQRPGLQLYFSF--------YMGSKTLRGRNTSSEYQILTARRE 233

Query: 319 DGGRYSVTASNESGYSTAKFELSVESQV 346
           D G Y   A+ E G    +   S E ++
Sbjct: 234 DSGLYWCEAATEDGNVLKR---SPELEL 258

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 17/73 (23%)

Query: 855 KAVLS---------EGGAVNLECKVIGVPQP-TLKWFKDGRELKAGDIHKIISG---EDG 901
           KAV++         +   V L C+V+ +P   + +WF +G   +       I+     D 
Sbjct: 1   KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYRITSASVNDS 60

Query: 902 TCCLGIYTCEAHN 914
               G Y C+   
Sbjct: 61  ----GEYRCQRGL 69

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 92.7 bits (231), Expect = 1e-22
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 12/92 (13%)

Query: 845 YKKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTC 903
             KP  +  L+   +S         K  G P+PT  W KDG+ +  G  +K+   + G  
Sbjct: 4   SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSE-DKGGF 62

Query: 904 CL----------GIYTCEAHNCMGTTSSSAAL 925
            L          G+YTC   N  G+ SSS  L
Sbjct: 63  FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 88.1 bits (219), Expect = 5e-21
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 1/92 (1%)

Query: 746 NKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVC 805
           +  P  + GL+    + +   KF V+ +  P P   W +D + + +    K+ ++  G  
Sbjct: 4   SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDK-GGF 62

Query: 806 HLKIHALEVADQAEWKCIATNDFGQSITSCFL 837
            L+IH  + +D   + C   N  G   +SC L
Sbjct: 63  FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 87.7 bits (218), Expect = 6e-21
 Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 2/95 (2%)

Query: 346 VPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNF 404
           +   P  +  L D  V   + A+  V+    P      W ++ + + +   Y+   D   
Sbjct: 3   ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEP-RPTAIWTKDGKAITQGGKYKLSEDKGG 61

Query: 405 YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
           +F+++      DSG +TC  +N+ G    SC+L++
Sbjct: 62  FFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 82.7 bits (205), Expect = 3e-19
 Identities = 30/96 (31%), Positives = 38/96 (39%), Gaps = 14/96 (14%)

Query: 649 YRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSS 704
             KP  V  L+        +  F  K  G P PT  W KD + +  G  Y+L+   G   
Sbjct: 4   SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFF 63

Query: 705 L----------GSYCCVAKNVMGKAESSTQLTIEDI 730
           L          G Y C  KN  G   SS +LTI+ I
Sbjct: 64  LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKAI 99

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 74.2 bits (183), Expect = 3e-16
 Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 12/96 (12%)

Query: 445 YKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPS 503
              P     L+              K  G P P  IW KD K I  G  + L+ + K   
Sbjct: 4   SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSED-KGGF 62

Query: 504 SL----------GTYTCEAVNCMGAAFSTSRVIARG 529
            L          G YTC   N  G+  S+ ++  + 
Sbjct: 63  FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 69.2 bits (170), Expect = 2e-14
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 7/95 (7%)

Query: 548 GP---APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMAD 603
           GP    P+ +  +++      + A    +    P P    W  K+G  +    KY +  D
Sbjct: 1   GPISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPT-AIWT-KDGKAITQGGKYKLSED 58

Query: 604 GLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSA 638
             GG+ +EI+  +  D G + C   +S+G    S 
Sbjct: 59  K-GGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSC 92

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 67.3 bits (165), Expect = 8e-14
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 16/109 (14%)

Query: 132 VPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF- 188
           +   P  +  L D  V   + A+  V+    P        D                I  
Sbjct: 3   ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKD-------------GKAITQ 49

Query: 189 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 237
           G +++     G   L I +    D G Y+ T  N +G  ++  +L++++
Sbjct: 50  GGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 67.3 bits (165), Expect = 8e-14
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 16/109 (14%)

Query: 239 VPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF- 295
           +   P  +  L D  V   + A+  V+    P        D                I  
Sbjct: 3   ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKD-------------GKAITQ 49

Query: 296 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
           G +++     G   L I +    D G Y+ T  N +G  ++  +L++++
Sbjct: 50  GGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 77  DHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 130
              I  G +++     G   L I +    D G Y+ T  N +G  ++  +L++++
Sbjct: 44  GKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 11/68 (16%)

Query: 2  GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
          G P P  IW KD K I  G  + L+ + K    L          G YTC   N  G+  S
Sbjct: 32 GEPRPTAIWTKDGKAITQGGKYKLSED-KGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSS 90

Query: 52 TSRVIARG 59
          + ++  + 
Sbjct: 91 SCKLTIKA 98

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 92.0 bits (229), Expect = 2e-22
 Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 12/92 (13%)

Query: 846 KKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKA-GDIHKIISGEDGTC 903
             P F  +LK   + EG  V   C+V G P+P + WFKDG+++    D + I    DGTC
Sbjct: 7   GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTC 66

Query: 904 CL----------GIYTCEAHNCMGTTSSSAAL 925
            L          G YT  A N  G  S +  L
Sbjct: 67  SLHTTASTLDDDGNYTIMAANPQGRISCTGRL 98

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 90.1 bits (224), Expect = 1e-21
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 1/102 (0%)

Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDN-VKILKETL 802
            ++ AP F   LK  +        FT +V+ +P+PK+ WF+D +Q+    +   I ++  
Sbjct: 4   GSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLD 63

Query: 803 GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKH 844
           G C L   A  + D   +  +A N  G+   +  L +     
Sbjct: 64  GTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNS 105

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 82.0 bits (203), Expect = 7e-19
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 16/97 (16%)

Query: 650 RKPRFVESLKAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKP-GDVYQLT----GTS 703
             P F   LK     +G+ V+F C+V G P P + WFKD +++ P  D Y +     GT 
Sbjct: 7   GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTC 66

Query: 704 SL----------GSYCCVAKNVMGKAESSTQLTIEDI 730
           SL          G+Y  +A N  G+   + +L ++ +
Sbjct: 67  SLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAV 103

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 77.8 bits (192), Expect = 2e-17
 Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 344 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRT--QH 400
           S    AP F  +L    +  G        +  +P + KI+W+++ +++     + T  + 
Sbjct: 3   SGSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNP-KPKIYWFKDGKQISPKSDHYTIQRD 61

Query: 401 DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKA 444
                 +  ++ +L D G +T +A N  GR  C+  L V    +
Sbjct: 62  LDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNS 105

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 77.8 bits (192), Expect = 2e-17
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 12/93 (12%)

Query: 446 KAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKA-GDIFALTANPKDPS 503
            APFF  +L+     +G  V+  C+V G P P++ W+KD K+I    D + +  +     
Sbjct: 7   GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTC 66

Query: 504 SL----------GTYTCEAVNCMGAAFSTSRVI 526
           SL          G YT  A N  G    T R++
Sbjct: 67  SLHTTASTLDDDGNYTIMAANPQGRISCTGRLM 99

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 67.4 bits (165), Expect = 9e-14
 Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 3/99 (3%)

Query: 546 PPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMADG 604
               AP F  ++++ K   G      C+V   P P+ IYW+ + + +   SD Y I  D 
Sbjct: 4   GSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPK-IYWFKDGKQISPKSDHYTIQRDL 62

Query: 605 LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
            G  S+        DDG +  +A +  G        + V
Sbjct: 63  DGTCSLHTTASTLDDDGNYTIMAANPQGRIS-CTGRLMV 100

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 60.1 bits (146), Expect = 4e-11
 Identities = 25/120 (20%), Positives = 39/120 (32%), Gaps = 19/120 (15%)

Query: 130 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPI 187
           S    AP F  +L    +  G        +  +P  +I    D                I
Sbjct: 3   SGSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKD-------------GKQI 49

Query: 188 FGN-RFRAI--NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA 244
                   I  + DG   L+      DD G Y++ A+N  G  +    L V++ V   P+
Sbjct: 50  SPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQA-VNSGPS 108

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 60.1 bits (146), Expect = 4e-11
 Identities = 25/120 (20%), Positives = 39/120 (32%), Gaps = 19/120 (15%)

Query: 237 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPI 294
           S    AP F  +L    +  G        +  +P  +I    D                I
Sbjct: 3   SGSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKD-------------GKQI 49

Query: 295 FGN-RFRAI--NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA 351
                   I  + DG   L+      DD G Y++ A+N  G  +    L V++ V   P+
Sbjct: 50  SPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQA-VNSGPS 108

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 54.3 bits (131), Expect = 4e-09
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 11/66 (16%)

Query: 2  GIPTPQLIWYKDNKKIKA-GDIFALTANPKDPSSL----------GTYTCEAVNCMGAAF 50
          G P P++ W+KD K+I    D + +  +     SL          G YT  A N  G   
Sbjct: 34 GNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRIS 93

Query: 51 STSRVI 56
           T R++
Sbjct: 94 CTGRLM 99

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 77  DHPIFGN-RFRAI--NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP 133
              I        I  + DG   L+      DD G Y++ A+N  G  +    L V++ V 
Sbjct: 46  GKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQA-VN 104

Query: 134 DAPA 137
             P+
Sbjct: 105 SGPS 108

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 96.9 bits (240), Expect = 1e-21
 Identities = 42/277 (15%), Positives = 83/277 (29%), Gaps = 36/277 (12%)

Query: 203 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 262
           L  R    +D G Y+    N +  S   F L V  +     + ++             R+
Sbjct: 81  LWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRI 140

Query: 263 LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGR 322
                    +   F  +     ++   G + I               L+       + G 
Sbjct: 141 TCP-----NVDGYFPSSVKPTITWY-MGCYKIQNFNNVIPEGM---NLSFLIALISNNGN 191

Query: 323 Y----SVTASNESGYSTAKFELSV-ESQVPDAPAFIRRLHD---IAVKVGTRARLLVEIR 374
           Y    +   +  + + T    + V  S     P  I   +D      + G    +   + 
Sbjct: 192 YTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVY 251

Query: 375 SPTE----IKIHWYRNDRKLEENKIYRTQHDGNFYFID----------LSSVSLFDSGR- 419
                    ++ W  + +K ++  I  T ++   +             +  V+  D  R 
Sbjct: 252 FSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRS 311

Query: 420 WTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEA 456
           + C A +A G    + ++   VP    AP +T EL  
Sbjct: 312 YVCHARSAKGEVAKAAKVKQKVP----APRYTVELAC 344

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 96.1 bits (238), Expect = 2e-21
 Identities = 43/315 (13%), Positives = 88/315 (27%), Gaps = 70/315 (22%)

Query: 664 DDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL------------------ 705
            +  + F          TL W+   ++    +        +                   
Sbjct: 32  FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDT 91

Query: 706 GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLL---LLTNNKAPKFIEGLKSCQATV 762
           G+Y C+ +N    ++ +  L +    +  +   KL    L       +            
Sbjct: 92  GNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPS 151

Query: 763 NEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKC 822
           +             +P ++W+    ++   +NV      L           +++   + C
Sbjct: 152 S------------VKPTITWYMGCYKIQNFNNVIPEGMNL-----SFLIALISNNGNYTC 194

Query: 823 IATNDFG--QSITSCFLKLNV---PKHYKKPKFLEELKAVLSE---GGAVNLECKVI--- 871
           + T          +  L + V   PK+   P        V+ E   G  + + C V    
Sbjct: 195 VVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSF 254

Query: 872 -GVPQPTLKWFKDGRELKAGDIHKIIS---------GEDGTCCLGI-----------YTC 910
               +  + W  DG++     I   I+          E  T  L I           Y C
Sbjct: 255 LMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVC 314

Query: 911 EAHNCMGTTSSSAAL 925
            A +  G  + +A +
Sbjct: 315 HARSAKGEVAKAAKV 329

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 95.7 bits (237), Expect = 3e-21
 Identities = 35/350 (10%), Positives = 93/350 (26%), Gaps = 57/350 (16%)

Query: 554 IKEVENVKAKIGTSAILECQVLVPPWPR----------SIYWYNKEGVVEASDKYHIMAD 603
           +  +  ++      A ++C +                 ++ WY      +  +  +    
Sbjct: 11  LDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLP 70

Query: 604 G----LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAA-YVHVLMPKNYRKPRFVESL 658
                     +        D G + C+  +++   + +    V           +     
Sbjct: 71  ENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHK 130

Query: 659 KAVMTDDGLVS---FECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL---------G 706
             +      ++    +        PT+ W+    +++  +     G +           G
Sbjct: 131 LYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNG 190

Query: 707 SYCCVAK----NVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLK---SCQ 759
           +Y CV              +  + +       +    +    ++   +   G +    C 
Sbjct: 191 NYTCVVTYPENGRTFHLTRTLTVKVVG-SPKNAVPPVIHSPNDHVVYEKEPGEELLIPCT 249

Query: 760 ATVNEEFKFTVQVSISPEPKVSWFRDDQQV---------VESDNVKILKETLGVCHLKIH 810
              +          +    +V W  D ++           ES +    ++      L I 
Sbjct: 250 VYFSF--------LMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIK 301

Query: 811 ALEVADQA-EWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLS 859
            +   D    + C A +  G+   +  +K  VP     P++  EL     
Sbjct: 302 KVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVP----APRYTVELACGFG 347

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 94.9 bits (235), Expect = 6e-21
 Identities = 38/254 (14%), Positives = 72/254 (28%), Gaps = 41/254 (16%)

Query: 310 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 369
           L  R    +D G Y+    N +  S   F L V  +     + ++             R+
Sbjct: 81  LWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRI 140

Query: 370 L-----VEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLA 424
                     S  +  I WY    K++         +G           + ++G +TC+ 
Sbjct: 141 TCPNVDGYFPSSVKPTITWYMGCYKIQNFN--NVIPEGMNLSF--LIALISNNGNYTCVV 196

Query: 425 ----ENAVGRSHCSCELSVLV-PKAYKAPFFTKELEAILTE---QGTVSLECKV----MG 472
                        +  + V+  PK    P      + ++ E      + + C V    + 
Sbjct: 197 TYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLM 256

Query: 473 IPTPQLIWYKDNKKIKA---------GDIFALTANPKDPSSL-----------GTYTCEA 512
               ++ W  D KK                + T +      L            +Y C A
Sbjct: 257 DSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHA 316

Query: 513 VNCMGAAFSTSRVI 526
            +  G     ++V 
Sbjct: 317 RSAKGEVAKAAKVK 330

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 94.2 bits (233), Expect = 1e-20
 Identities = 34/266 (12%), Positives = 73/266 (27%), Gaps = 22/266 (8%)

Query: 96  LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 155
           L  R    +D G Y+    N +  S   F L V  +     + ++             R+
Sbjct: 81  LWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRI 140

Query: 156 LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGR 215
                    +   F  +     ++   G + I               L+       + G 
Sbjct: 141 TCP-----NVDGYFPSSVKPTITWY-MGCYKIQNFNNVIPEGM---NLSFLIALISNNGN 191

Query: 216 Y----SVTASNESGYSTAKFELSV-ESQVPDAPAFIRRLHD---IAVKVGTRARLLVEIR 267
           Y    +   +  + + T    + V  S     P  I   +D      + G    +   + 
Sbjct: 192 YTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVY 251

Query: 268 SPTEIKCQFDL----NNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDD-GGR 322
               +  + ++    +   P             +  R  +      L+I++V  +D    
Sbjct: 252 FSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRS 311

Query: 323 YSVTASNESGYSTAKFELSVESQVPD 348
           Y   A +  G      ++  +   P 
Sbjct: 312 YVCHARSAKGEVAKAAKVKQKVPAPR 337

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 80.7 bits (198), Expect = 3e-16
 Identities = 40/322 (12%), Positives = 75/322 (23%), Gaps = 74/322 (22%)

Query: 460 EQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANP----KDPSSL---------- 505
            +  +             LIWY   +     +            K+   L          
Sbjct: 32  FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDT 91

Query: 506 GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIG 565
           G YTC   N    +     +                  +         +K   +      
Sbjct: 92  GNYTCMLRNTTYCSKVAFPL----------------EVVQKDSCFNSPMKLPVHKLYIEY 135

Query: 566 TSAILECQVL---VPPWPR-SIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDG 621
               + C  +    P   + +I WY        +    I      G ++        ++G
Sbjct: 136 GIQRITCPNVDGYFPSSVKPTITWY-MGCYKIQNFNNVI----PEGMNLSFLIALISNNG 190

Query: 622 EWKCVATSSSGVKQFSA---AYVHVLMPKNYRKPRFV----ESLKAVMTDDGLVSFECKV 674
            + CV T     + F       V V+       P  +    + +         +   C V
Sbjct: 191 NYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTV 250

Query: 675 V----GFPTPTLQWFKDN-------------EELKPGDVYQLTGTSSL-----------G 706
                      + W  D              E +        T T  L            
Sbjct: 251 YFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKR 310

Query: 707 SYCCVAKNVMGKAESSTQLTIE 728
           SY C A++  G+   + ++  +
Sbjct: 311 SYVCHARSAKGEVAKAAKVKQK 332

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 69.1 bits (168), Expect = 2e-12
 Identities = 27/194 (13%), Positives = 54/194 (27%), Gaps = 37/194 (19%)

Query: 752 IEGLKSCQATVNEEF-----------KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKE 800
           ++ ++  Q   +E             KF    + S    + W+   Q     + +     
Sbjct: 11  LDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLP 70

Query: 801 ----TLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV---PKHYKKPKFLEE 853
               +     L      + D   + C+  N    S  +    L V      +  P  L  
Sbjct: 71  ENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVA--FPLEVVQKDSCFNSPMKLPV 128

Query: 854 LKAVLSEGGAV----NLECKVIGVPQPTLKWFKDGRELKAGDIH---------KIISGED 900
            K  +  G       N++       +PT+ W+    +++  +            I    +
Sbjct: 129 HKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISN 188

Query: 901 GTCCLGIYTCEAHN 914
                G YTC    
Sbjct: 189 N----GNYTCVVTY 198

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 68.7 bits (167), Expect = 2e-12
 Identities = 35/297 (11%), Positives = 72/297 (24%), Gaps = 60/297 (20%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANP----KDPSSL----------GTYTCEAVNCMG 47
                 LIWY   +     +            K+   L          G YTC   N   
Sbjct: 44  HSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTY 103

Query: 48  AAFSTSRV-IARGQQSFLDNDDVPFNRA-----------------------------QGD 77
            +     + + +    F     +P ++                               G 
Sbjct: 104 CSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGC 163

Query: 78  HPIFGNRFRAINRDGRTELNIRRVRRDDGGRY----SVTASNESGYSTAKFELSV-ESQV 132
           + I               L+       + G Y    +   +  + + T    + V  S  
Sbjct: 164 YKIQNFNNVIPEGM---NLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPK 220

Query: 133 PDAPAFIRRLHD---IAVKVGTRARLLVEIRSPTEIKCQFDL----NNTIPFSFRAQGDH 185
              P  I   +D      + G    +   +     +  + ++    +   P         
Sbjct: 221 NAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTI 280

Query: 186 PIFGNRFRAINRDGRTELNIRRVRRDD-GGRYSVTASNESGYSTAKFELSVESQVPD 241
               +  R  +      L+I++V  +D    Y   A +  G      ++  +   P 
Sbjct: 281 NESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPAPR 337

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 92.8 bits (230), Expect = 2e-21
 Identities = 34/209 (16%), Positives = 65/209 (31%), Gaps = 45/209 (21%)

Query: 558 ENVKAKIGTSAILECQVLVPPWPR---SIYWYNKEGVVEASDKYHIMADG---------- 604
           + ++   G +A L C+  + P  +    I W       +  D+  I+  G          
Sbjct: 8   QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPD 67

Query: 605 -------------LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRK 651
                         G  SI +  L+  D G ++C    + GV       + VL+      
Sbjct: 68  LKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKF-LLTVLVK----- 121

Query: 652 PRFVESLKAVMTDDGL-VSFECKVV-GFPTPTLQWFKDNEELK-PGDVYQLTGTSSL--- 705
           P           + G     +C+   G      +W K ++    P        +  +   
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVK 181

Query: 706 -------GSYCCVAKNVMGKAESSTQLTI 727
                  G+Y C  +N +G  +   +L +
Sbjct: 182 NASSEYSGTYSCTVQNRVGSDQCMLRLDV 210

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 90.5 bits (224), Expect = 1e-20
 Identities = 31/155 (20%), Positives = 55/155 (35%), Gaps = 10/155 (6%)

Query: 292 HPIFGNRFRAINRD---GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 348
           +P    R    + D   G   +N+  ++  D G Y        G +  KF L+V   V  
Sbjct: 65  YPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTV--LVK- 121

Query: 349 APAFIRRLHDIAVKVGTRARLL-VEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
            P+  R   D + ++G   +L          ++  W +          +  +       +
Sbjct: 122 -PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISV 180

Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
              + S   SG ++C  +N VG   C   L V+ P
Sbjct: 181 --KNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP 213

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 76.6 bits (188), Expect = 8e-16
 Identities = 29/204 (14%), Positives = 53/204 (25%), Gaps = 43/204 (21%)

Query: 759 QATVNEEFKFTVQVSISPEPK----VSWFRDDQQVVESDNVKILKE-------------- 800
           +    E      + ++SPE +    + W          D V IL                
Sbjct: 11  EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKG 70

Query: 801 ---------TLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFL 851
                      G   + +  L+++D   ++C      G +     L + V      P   
Sbjct: 71  RVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK-----PSGT 125

Query: 852 E-ELKAVLSEGGAVNLECKVI-GVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL---- 905
              +      G    L+C+   G      +W K            +         +    
Sbjct: 126 RCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPW-LAEMTSPVISVKNAS 184

Query: 906 ----GIYTCEAHNCMGTTSSSAAL 925
               G Y+C   N +G+      L
Sbjct: 185 SEYSGTYSCTVQNRVGSDQCMLRL 208

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 76.3 bits (187), Expect = 1e-15
 Identities = 35/206 (16%), Positives = 63/206 (30%), Gaps = 42/206 (20%)

Query: 357 HDIAVKVGTRARL----LVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYF------ 406
             I    G  A L     +       + I W  +    +        + G+  +      
Sbjct: 8   QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPD 67

Query: 407 ------------------IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAP 448
                             I+++++ L D G + C  + A G ++    L+VLV      P
Sbjct: 68  LKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK-----P 122

Query: 449 FFTKELEAILTEQG-TVSLECKVM-GIPTPQLIWYKDNKKIKAGDIFA-------LTANP 499
             T+       E G    L+C+   G    Q  W K +        +        ++   
Sbjct: 123 SGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKN 182

Query: 500 KDPSSLGTYTCEAVNCMGAAFSTSRV 525
                 GTY+C   N +G+     R+
Sbjct: 183 ASSEYSGTYSCTVQNRVGSDQCMLRL 208

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 75.5 bits (185), Expect = 2e-15
 Identities = 35/187 (18%), Positives = 61/187 (32%), Gaps = 17/187 (9%)

Query: 50  FSTSRVIARGQQSFLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRY 109
            S S      Q   L + D  ++    D     +      + G   +N+  ++  D G Y
Sbjct: 40  ISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTY 99

Query: 110 SVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQF 169
                   G +  KF L+V   V   P+  R   D + ++G   +L          KC+ 
Sbjct: 100 QCKVKKAPGVANKKFLLTV--LVK--PSGTRCFVDGSEEIGNDFKL----------KCEP 145

Query: 170 DLNNTIP-FSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYST 228
              +    F ++   D       + A        ++++    +  G YS T  N  G   
Sbjct: 146 KEGSLPLQFEWQKLSDSQTMPTPWLAEMTSP--VISVKNASSEYSGTYSCTVQNRVGSDQ 203

Query: 229 AKFELSV 235
               L V
Sbjct: 204 CMLRLDV 210

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 50.8 bits (121), Expect = 4e-07
 Identities = 30/223 (13%), Positives = 48/223 (21%), Gaps = 65/223 (29%)

Query: 463 TVSLECKVMGIPTPQ----LIWYKDNKKIKAGDI-----------------------FAL 495
           T  L CK    P  Q    + W       +  D                        F  
Sbjct: 17  TAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTS 76

Query: 496 TANPKDPSSL----------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLM 545
                  +S+          GTY C+     G A     +                    
Sbjct: 77  NDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV---------------- 120

Query: 546 PPGPAPIFIKEVENVKAKIGTSAILECQVL--VPPWPRSIYWYNKEGVVEASDKYHIMAD 603
                P   +   +   +IG    L+C+      P      W            +     
Sbjct: 121 ----KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLP-L-QFEWQKLSDSQTMPTPWLAEMT 174

Query: 604 GLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
                 I +    +   G + C   +  G  Q     + V+ P
Sbjct: 175 ---SPVISVKNASSEYSGTYSCTVQNRVGSDQCM-LRLDVVPP 213

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 89.4 bits (222), Expect = 2e-21
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 12/95 (12%)

Query: 843 KHYKKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHK-IISGED 900
           +H + P F+ + +   + EG +V LEC++  +P P L W ++   ++       +     
Sbjct: 11  EHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNT 70

Query: 901 GTCCL----------GIYTCEAHNCMGTTSSSAAL 925
           G   L          G YT  A N  G T+ +  L
Sbjct: 71  GRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRL 105

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 85.9 bits (213), Expect = 5e-20
 Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 1/107 (0%)

Query: 743 LTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDN-VKILKET 801
             + +AP FI   +S +    +  K   Q+S  P PK+ W R+++ V  + + + + ++ 
Sbjct: 10  HEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDN 69

Query: 802 LGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKP 848
            G   L I  +   D   +   A N+ G +  +  L +    +   P
Sbjct: 70  TGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTLP 116

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 82.4 bits (204), Expect = 6e-19
 Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 4/111 (3%)

Query: 341 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEEN--KIYR 397
               +   AP FI +     V  G   +L  +I   P   K+ W RN+  ++ N  +I  
Sbjct: 7   HHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIP-PPKLFWKRNNEMVQFNTDRISL 65

Query: 398 TQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAP 448
            Q +     + +  V+  D+G +T  A N  G + C+  L V        P
Sbjct: 66  YQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTLP 116

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 81.7 bits (202), Expect = 1e-18
 Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 17/118 (14%)

Query: 428 VGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKK 486
           +G  H             +AP F  + ++    +G +V LEC++  IP P+L W ++N+ 
Sbjct: 1   MGHHHHHHSHEHK-----RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEM 55

Query: 487 IKA-GDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTSRVIARGQQSF 533
           ++   D  +L  +     +L          G YT  AVN  G     +R+    + + 
Sbjct: 56  VQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQ 113

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 77.4 bits (191), Expect = 4e-17
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 16/95 (16%)

Query: 650 RKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGD-----VYQLTGTS 703
           R P F+   ++    +G  V  EC++   P P L W ++NE ++            TG  
Sbjct: 14  RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV 73

Query: 704 SL----------GSYCCVAKNVMGKAESSTQLTIE 728
           +L          G Y   A N  G    +T+L + 
Sbjct: 74  TLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVT 108

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 68.6 bits (168), Expect = 4e-14
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 3/104 (2%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMADGLGGY 608
           AP+FI + ++ K   G S  LECQ+   P P+ ++W  N E V   +D+  +  D  G  
Sbjct: 15  APMFIYKPQSKKVLEGDSVKLECQISAIPPPK-LFWKRNNEMVQFNTDRISLYQDNTGRV 73

Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKP 652
           ++ I  +   D G +   A + +GV       + V    N   P
Sbjct: 74  TLLIKDVNKKDAGWYTVSAVNEAGVTT-CNTRLDVTARPNQTLP 116

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 67.4 bits (165), Expect = 1e-13
 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 14/115 (12%)

Query: 127 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGD 184
               +   AP FI +     V  G   +L  +I   P  ++  + + N  + F+      
Sbjct: 7   HHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRN-NEMVQFN------ 59

Query: 185 HPIFGNRFRAI-NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 238
                +R     +  GR  L I+ V + D G Y+V+A NE+G +T    L V ++
Sbjct: 60  ----TDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 67.4 bits (165), Expect = 1e-13
 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 14/115 (12%)

Query: 234 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGD 291
               +   AP FI +     V  G   +L  +I   P  ++  + + N  + F+      
Sbjct: 7   HHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRN-NEMVQFN------ 59

Query: 292 HPIFGNRFRAI-NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
                +R     +  GR  L I+ V + D G Y+V+A NE+G +T    L V ++
Sbjct: 60  ----TDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 11/73 (15%)

Query: 2   GIPTPQLIWYKDNKKIKA-GDIFALTANPKDPSSL----------GTYTCEAVNCMGAAF 50
            IP P+L W ++N+ ++   D  +L  +     +L          G YT  AVN  G   
Sbjct: 41  AIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTT 100

Query: 51  STSRVIARGQQSF 63
             +R+    + + 
Sbjct: 101 CNTRLDVTARPNQ 113

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 76  GDHPIFGNRFRAI---NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 131
            +  +  N  R     +  GR  L I+ V + D G Y+V+A NE+G +T    L V ++
Sbjct: 52  NNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 90.1 bits (223), Expect = 1e-20
 Identities = 28/195 (14%), Positives = 53/195 (27%), Gaps = 39/195 (20%)

Query: 359 IAVKVGTRARLLVEIRSPT---EIKIHWYRNDRKLEE-----------------NKIYRT 398
           +   +G R  L    R  +   EI++ W++     E+                    +  
Sbjct: 1   VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60

Query: 399 QHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAIL 458
               N +F+ +++ ++   G + C  +           LSV+ P        +   E   
Sbjct: 61  HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKP-----LTLSVHSERSQ 115

Query: 459 TEQG-TVSLECKVMGIPTPQLIWYKDNKKIKA-------------GDIFALTANPKDPSS 504
                 +++ C V   P P + W        A             G +            
Sbjct: 116 FPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPW 175

Query: 505 LGTYTCEAVNCMGAA 519
               TC   N    A
Sbjct: 176 HLPVTCVGKNDKEEA 190

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 81.2 bits (200), Expect = 2e-17
 Identities = 27/193 (13%), Positives = 55/193 (28%), Gaps = 38/193 (19%)

Query: 760 ATVNEEFKFT---VQVSISPEPKVSWFRDDQQVVESDNVKILKETL-------------- 802
           A + E    T    +VS+ PE +VSWF+      +    ++  + +              
Sbjct: 3   AFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR 62

Query: 803 --GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK-AVLS 859
                 L + A  ++    + C       +      L +  P            + +   
Sbjct: 63  SANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKP-----LTLSVHSERSQFP 117

Query: 860 EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIH--KIISGEDGTCCL-----------G 906
           +   + + C V   P P ++W        A       ++  +DG+  +            
Sbjct: 118 DFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHL 177

Query: 907 IYTCEAHNCMGTT 919
             TC   N     
Sbjct: 178 PVTCVGKNDKEEA 190

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 80.8 bits (199), Expect = 2e-17
 Identities = 30/196 (15%), Positives = 49/196 (25%), Gaps = 20/196 (10%)

Query: 252 IAVKVGTRARLL-----VEIRSPTEIKC-QFDLNNTIPFSFRAQGDHPIFGNRFRA---I 302
           +   +G R  L      V +    E+   +           R   D       FR    I
Sbjct: 1   VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60

Query: 303 NRDGRTE-LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAV 361
           +R   T  L +        G Y           T +  LSV    P              
Sbjct: 61  HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSV--VKP--LTLSVHSERSQF 116

Query: 362 KVGTRARLLVEIR-SPTEIKIHWYRNDRKL----EENKIYRTQHDGNFYFIDLSSVSLFD 416
              +   +   +   P    + W   +         N     + DG+       S+    
Sbjct: 117 PDFSVLTVTCTVNAFPH-PHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPW 175

Query: 417 SGRWTCLAENAVGRSH 432
               TC+ +N    +H
Sbjct: 176 HLPVTCVGKNDKEEAH 191

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 75.8 bits (186), Expect = 1e-15
 Identities = 29/200 (14%), Positives = 49/200 (24%), Gaps = 46/200 (23%)

Query: 560 VKAKIGTSAILEC---QVLVPPWPRSIYWY-NKEGVVEA----------------SDKYH 599
           V A +G    L     +V + P    + W+    G  +                    + 
Sbjct: 1   VTAFLGERVTLTSYWRRVSLGPEIE-VSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFD 59

Query: 600 IMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLK 659
           I       + + +       DG + C              ++ V+ P            +
Sbjct: 60  IHRSA-NTFFLVVTAANISHDGNYLCRMKLGETEVTKQE-HLSVVKP-----LTLSVHSE 112

Query: 660 AVMTDDG-LVSFECKVVGFPTPTLQWFKDN----EELKPGDVYQLTGTSSL--------- 705
                D  +++  C V  FP P +QW                       SL         
Sbjct: 113 RSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLP 172

Query: 706 ----GSYCCVAKNVMGKAES 721
                   CV KN   +A  
Sbjct: 173 KPWHLPVTCVGKNDKEEAHG 192

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 65.4 bits (159), Expect = 4e-12
 Identities = 23/179 (12%), Positives = 41/179 (22%), Gaps = 18/179 (10%)

Query: 66  NDDVPFNRAQGDHPIFGNRFRA---INRDGRTE-LNIRRVRRDDGGRYSVTASNESGYST 121
            + V   R   D       FR    I+R   T  L +        G Y           T
Sbjct: 35  EEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVT 94

Query: 122 AKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSF 179
            +  LSV    P                 +   +   +   P   ++         P   
Sbjct: 95  KQEHLSV--VKP--LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMP-EGVEPAPT 149

Query: 180 RAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 238
            A G      +   ++            + +      +    N+   +   +     SQ
Sbjct: 150 AANGGVMKEKDGSLSV-------AVDLSLPKPWHLPVTCVGKNDKEEAHGVYVSGYLSQ 201

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 65.4 bits (159), Expect = 5e-12
 Identities = 27/213 (12%), Positives = 49/213 (23%), Gaps = 24/213 (11%)

Query: 145 IAVKVGTRARLL-----VEIRSPTEIKC-QFDLNNTIPFSFRAQGDHPIFGNRFRA---I 195
           +   +G R  L      V +    E+   +           R   D       FR    I
Sbjct: 1   VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60

Query: 196 NRDGRTE-LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAV 254
           +R   T  L +        G Y           T +  LSV    P              
Sbjct: 61  HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSV--VKP--LTLSVHSERSQF 116

Query: 255 KVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNI 312
              +   +   +   P   ++         P    A G      +   ++          
Sbjct: 117 PDFSVLTVTCTVNAFPHPHVQWLMP-EGVEPAPTAANGGVMKEKDGSLSV-------AVD 168

Query: 313 RRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
             + +      +    N+   +   +     SQ
Sbjct: 169 LSLPKPWHLPVTCVGKNDKEEAHGVYVSGYLSQ 201

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 65.1 bits (158), Expect = 7e-12
 Identities = 31/198 (15%), Positives = 53/198 (26%), Gaps = 51/198 (25%)

Query: 667 LVSFECKVVGFPTPTLQWFKDNEELKP--------------------GDVYQLTGTSSL- 705
           L S+  +V   P   + WFK     +                      D+++   T  L 
Sbjct: 11  LTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLV 70

Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLK 756
                    G+Y C  K    +      L++                   K        +
Sbjct: 71  VTAANISHDGNYLCRMKLGETEVTKQEHLSV------------------VKPLTLSVHSE 112

Query: 757 SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVES--DNVKILKETLGVCHLKI-HALE 813
             Q         T  V+  P P V W   +         N  ++KE  G   + +  +L 
Sbjct: 113 RSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLP 172

Query: 814 VADQAEWKCIATNDFGQS 831
                   C+  ND  ++
Sbjct: 173 KPWHLPVTCVGKNDKEEA 190

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 63.1 bits (153), Expect = 3e-11
 Identities = 27/222 (12%), Positives = 50/222 (22%), Gaps = 40/222 (18%)

Query: 434 SCELS-VLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDI 492
           +     V +    +  +F           G +  +   +  P         +      + 
Sbjct: 12  TSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRS-----ANT 66

Query: 493 FALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPI 552
           F L     + S  G Y C              +                           
Sbjct: 67  FFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVV--------------------KPLT 106

Query: 553 FIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEA----SDKYHIMADGLGGY 608
                E  +    +   + C V   P P  + W   EGV  A    +       DG    
Sbjct: 107 LSVHSERSQFPDFSVLTVTCTVNAFPHPH-VQWLMPEGVEPAPTAANGGVMKEKDG---- 161

Query: 609 SIEINYLEAV---DDGEWKCVATSSSGVKQFSAAYVHVLMPK 647
           S+ +    ++         CV  +          YV   + +
Sbjct: 162 SLSVAVDLSLPKPWHLPVTCVGKNDKEEAH--GVYVSGYLSQ 201

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 84.7 bits (210), Expect = 6e-20
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 11/88 (12%)

Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL---- 705
            P F   LK     +G     +C V G P P + W  + + ++        G + L    
Sbjct: 11  APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQD 70

Query: 706 ------GSYCCVAKNVMGKAESSTQLTI 727
                 G+Y C+A+N +G+   S  +T+
Sbjct: 71  ALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 84.7 bits (210), Expect = 7e-20
 Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 15/90 (16%)

Query: 847 KPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL 905
            P F   LK   + EG    L+C V G P P + W  +G+ ++          E G   L
Sbjct: 11  APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC----EAGVAEL 66

Query: 906 ----------GIYTCEAHNCMGTTSSSAAL 925
                     G YTC A N +G  S SA +
Sbjct: 67  HIQDALPEDHGTYTCLAENALGQVSCSAWV 96

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 82.4 bits (204), Expect = 4e-19
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 743 LTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETL 802
                AP F   LK C     ++F     V  +P P+++W  + Q +  + +        
Sbjct: 6   SGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCE----A 61

Query: 803 GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLN 840
           GV  L I      D   + C+A N  GQ   S ++ ++
Sbjct: 62  GVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 81.2 bits (201), Expect = 1e-18
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 341 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQ 399
           S  S +  AP+F   L D AV  G    L   +R +P   +I W  N + ++  +     
Sbjct: 3   SGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPV-PRITWLLNGQPIQYARSTCEA 61

Query: 400 HDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
                +   +      D G +TCLAENA+G+  CS  ++V
Sbjct: 62  GVAELH---IQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 76.6 bits (189), Expect = 5e-17
 Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 18/103 (17%)

Query: 434 SCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDI 492
           S    + V      P F+  L+     +G    L+C V G P P++ W  + + I+    
Sbjct: 3   SGSSGMEVA-----PSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS 57

Query: 493 FALT---------ANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
                        A P+D    GTYTC A N +G    ++ V 
Sbjct: 58  TCEAGVAELHIQDALPEDH---GTYTCLAENALGQVSCSAWVT 97

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 17/111 (15%)

Query: 127 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGD 184
           S  S +  AP+F   L D AV  G    L   +R +P   I    +    I ++      
Sbjct: 3   SGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLN-GQPIQYA------ 55

Query: 185 HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
                   R+    G  EL+I+    +D G Y+  A N  G  +    ++V
Sbjct: 56  --------RSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 17/111 (15%)

Query: 234 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGD 291
           S  S +  AP+F   L D AV  G    L   +R +P   I    +    I ++      
Sbjct: 3   SGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLN-GQPIQYA------ 55

Query: 292 HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
                   R+    G  EL+I+    +D G Y+  A N  G  +    ++V
Sbjct: 56  --------RSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
           AP F   +++     G   +L+C V   P PR I W    G      +    A   G   
Sbjct: 11  APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPR-ITWL-LNGQPIQYARSTCEA---GVAE 65

Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSA 638
           + I      D G + C+A ++ G    SA
Sbjct: 66  LHIQDALPEDHGTYTCLAENALGQVSCSA 94

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 12/64 (18%)

Query: 2  GIPTPQLIWYKDNKKIKAGDIFALT---------ANPKDPSSLGTYTCEAVNCMGAAFST 52
          G P P++ W  + + I+                 A P+D    GTYTC A N +G    +
Sbjct: 37 GTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDH---GTYTCLAENALGQVSCS 93

Query: 53 SRVI 56
          + V 
Sbjct: 94 AWVT 97

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 86  RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
           R+    G  EL+I+    +D G Y+  A N  G  +    ++V
Sbjct: 56  RSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 84.3 bits (209), Expect = 1e-19
 Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 12/90 (13%)

Query: 847 KPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL 905
             + L + +   + EG +    C   G P PT+ W + G+ L     H++ +        
Sbjct: 14  AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT-TKYKSTF 72

Query: 906 ----------GIYTCEAHNCMGTTSSSAAL 925
                     G Y+    N  G   +   L
Sbjct: 73  EISSVQASDEGNYSVVVENSEGKQEAEFTL 102

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 82.4 bits (204), Expect = 5e-19
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 14/92 (15%)

Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL- 705
             R +   +++   +G    F C   G P PT+ W +  + L     +Q+T     S+  
Sbjct: 14  AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 73

Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIE 728
                    G+Y  V +N  GK E+   LTI+
Sbjct: 74  ISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 80.9 bits (200), Expect = 2e-18
 Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 1/91 (1%)

Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
           A + +   +S      E  +F+      P P V+W R  Q +  S   ++   T      
Sbjct: 14  AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVT-TTKYKSTF 72

Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLK 838
           +I +++ +D+  +  +  N  G+      L 
Sbjct: 73  EISSVQASDEGNYSVVVENSEGKQEAEFTLT 103

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 80.9 bits (200), Expect = 2e-18
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 6/99 (6%)

Query: 344 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR---SPTEIKIHWYRNDRKLEENKIYRTQH 400
           S+   A   + +   + V  G  AR   +      PT   + W R  + L  +  ++   
Sbjct: 9   SKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPT---VTWLRKGQVLSTSARHQVTT 65

Query: 401 DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
                  ++SSV   D G ++ + EN+ G+      L++
Sbjct: 66  TKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 73.9 bits (182), Expect = 5e-16
 Identities = 14/95 (14%), Positives = 28/95 (29%), Gaps = 12/95 (12%)

Query: 443 KAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD 501
           K   A     +  ++   +G +    C   G P P + W +  + +       +T     
Sbjct: 10  KTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYK 69

Query: 502 PSSL----------GTYTCEAVNCMGAAFSTSRVI 526
            S+           G Y+    N  G   +   + 
Sbjct: 70  -STFEISSVQASDEGNYSVVVENSEGKQEAEFTLT 103

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 16/110 (14%)

Query: 130 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPI 187
           S+   A   + +   + V  G  AR   +    P   +                     +
Sbjct: 9   SKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRK-------------GQVL 55

Query: 188 F-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
               R +      ++   I  V+  D G YSV   N  G   A+F L+++
Sbjct: 56  STSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 16/110 (14%)

Query: 237 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPI 294
           S+   A   + +   + V  G  AR   +    P   +                     +
Sbjct: 9   SKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRK-------------GQVL 55

Query: 295 F-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
               R +      ++   I  V+  D G YSV   N  G   A+F L+++
Sbjct: 56  STSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
           A   + +  ++    G SA   C     P P  + W  K  V+  S ++ +        +
Sbjct: 14  AARILTKPRSMTVYEGESARFSCDTDGEPVPT-VTWLRKGQVLSTSARHQVTTTK-YKST 71

Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSA 638
            EI+ ++A D+G +  V  +S G ++   
Sbjct: 72  FEISSVQASDEGNYSVVVENSEGKQEAEF 100

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 11/65 (16%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
           G P P + W +  + +       +T      S+           G Y+    N  G   +
Sbjct: 40  GEPVPTVTWLRKGQVLSTSARHQVTTTKYK-STFEISSVQASDEGNYSVVVENSEGKQEA 98

Query: 52  TSRVI 56
              + 
Sbjct: 99  EFTLT 103

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 76  GDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
               +    R +      ++   I  V+  D G YSV   N  G   A+F L+++
Sbjct: 51  KGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 84.3 bits (209), Expect = 1e-19
 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 17/111 (15%)

Query: 838 KLNVPKHYKKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKII 896
           +L V +    P     L+    S G ++ + C   G P P + WFKD   L       + 
Sbjct: 2   QLTVLER-VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL- 59

Query: 897 SGEDGTCCL----------GIYTCEAHNCMGTTSSSAALL--GFEDKSQIE 935
             +DG   L          G+YTC+A + +G     A  +  G ++K+ +E
Sbjct: 60  --KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLE 108

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 83.5 bits (207), Expect = 2e-19
 Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 739 KLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKIL 798
           + L +    AP     L++   ++ E  + +   S +P P++ WF+D++ +VE   + + 
Sbjct: 1   RQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL- 59

Query: 799 KETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
               G  +L I  +   D+  + C A +  G +    F  +   
Sbjct: 60  --KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 101

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 81.6 bits (202), Expect = 1e-18
 Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 6/105 (5%)

Query: 339 ELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYR 397
           +L+V  +V   P     L +    +G    +      +P   +I W++++  L E+    
Sbjct: 2   QLTVLERVA--PTITGNLENQTTSIGESIEVSCTASGNP-PPQIMWFKDNETLVEDSGIV 58

Query: 398 TQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
            +       I    V   D G +TC A + +G +       +   
Sbjct: 59  LKDGNRNLTI--RRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 101

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 80.5 bits (199), Expect = 3e-18
 Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 12/90 (13%)

Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT-GTSSL--- 705
            P    +L+   T  G  +   C   G P P + WFKDNE L       L  G  +L   
Sbjct: 10  APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIR 69

Query: 706 -------GSYCCVAKNVMGKAESSTQLTIE 728
                  G Y C A +V+G A+      IE
Sbjct: 70  RVRKEDEGLYTCQACSVLGCAKVEAFFIIE 99

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 75.8 bits (187), Expect = 1e-16
 Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 11/106 (10%)

Query: 436 ELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFA 494
           +L+VL   A   P  T  LE   T  G ++ + C   G P PQ++W+KDN+ +       
Sbjct: 2   QLTVLERVA---PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIV 58

Query: 495 LTANPK-------DPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSF 533
           L    +            G YTC+A + +G A   +  I  G Q  
Sbjct: 59  LKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK 104

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 19/123 (15%)

Query: 125 ELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQ 182
           +L+V  +V   P     L +    +G    +      +P  +I    D            
Sbjct: 2   QLTVLERVA--PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKD------------ 47

Query: 183 GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 242
            +  +  +    + +DG   L IRRVR++D G Y+  A +  G +  +    +E    + 
Sbjct: 48  -NETLVEDS-GIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG-AQEK 104

Query: 243 PAF 245
              
Sbjct: 105 TNL 107

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 19/123 (15%)

Query: 232 ELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQ 289
           +L+V  +V   P     L +    +G    +      +P  +I    D            
Sbjct: 2   QLTVLERVA--PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKD------------ 47

Query: 290 GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 349
            +  +  +    + +DG   L IRRVR++D G Y+  A +  G +  +    +E    + 
Sbjct: 48  -NETLVEDS-GIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG-AQEK 104

Query: 350 PAF 352
              
Sbjct: 105 TNL 107

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 59.7 bits (145), Expect = 5e-11
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 5/97 (5%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
           AP     +EN    IG S  + C     P P+ I W+ K+      D   ++ D  G  +
Sbjct: 10  APTITGNLENQTTSIGESIEVSCTASGNPPPQ-IMWF-KDNETLVEDSGIVLKD--GNRN 65

Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
           + I  +   D+G + C A S  G  +   A+  +   
Sbjct: 66  LTIRRVRKEDEGLYTCQACSVLGCAKVE-AFFIIEGA 101

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPK-------DPSSLGTYTCEAVNCMGAAFSTSR 54
           G P PQ++W+KDN+ +       L    +            G YTC+A + +G A   + 
Sbjct: 36  GNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAF 95

Query: 55  VIARGQQSF 63
            I  G Q  
Sbjct: 96  FIIEGAQEK 104

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 76  GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 135
            +  +  +    + +DG   L IRRVR++D G Y+  A +  G +  +    +E    + 
Sbjct: 47  DNETLVEDS-GIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG-AQEK 104

Query: 136 PAF 138
              
Sbjct: 105 TNL 107

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 84.3 bits (209), Expect = 1e-19
 Identities = 15/95 (15%), Positives = 37/95 (38%), Gaps = 1/95 (1%)

Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLG 803
           + +  P+ I+  +  +    E  +   +V+ +     +W +  +Q+ ES+++K+ + +  
Sbjct: 3   SGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKV-ENSEN 61

Query: 804 VCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
              L I A        +  +  N  G       L 
Sbjct: 62  GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLT 96

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 82.8 bits (205), Expect = 4e-19
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 12/89 (13%)

Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL- 905
           P+ ++  +   +  G +V L  KV G    T  W K  ++++  +  K+ +  +    L 
Sbjct: 8   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVEN-SENGSKLT 66

Query: 906 ---------GIYTCEAHNCMGTTSSSAAL 925
                    G YT    N +G+  +   L
Sbjct: 67  ILAARQEHCGCYTLLVENKLGSRQAQVNL 95

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 78.1 bits (193), Expect = 2e-17
 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 14/92 (15%)

Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL-- 705
           P+ ++  +      G  V    KV G    T  W K  ++++  +  ++      S L  
Sbjct: 8   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 67

Query: 706 --------GSYCCVAKNVMGKAESSTQLTIED 729
                   G Y  + +N +G  ++   LT+ D
Sbjct: 68  LAARQEHCGCYTLLVENKLGSRQAQVNLTVVD 99

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 77.8 bits (192), Expect = 3e-17
 Identities = 18/94 (19%), Positives = 39/94 (41%)

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
            P  I+   D  V+ G    L  ++     I   W +  ++++E++  + ++  N   + 
Sbjct: 7   GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLT 66

Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
           + +      G +T L EN +G       L+V+  
Sbjct: 67  ILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 100

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 72.0 bits (177), Expect = 3e-15
 Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 17/114 (14%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNR 191
            P  I+   D  V+ G    L  ++  +                          I     
Sbjct: 7   GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKF-------------RKQIQESEH 53

Query: 192 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAF 245
            +  N +  ++L I   R++  G Y++   N+ G   A+  L+V    PD PA 
Sbjct: 54  MKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV-DKPDPPAG 106

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 72.0 bits (177), Expect = 3e-15
 Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 17/114 (14%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNR 298
            P  I+   D  V+ G    L  ++  +                          I     
Sbjct: 7   GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKF-------------RKQIQESEH 53

Query: 299 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAF 352
            +  N +  ++L I   R++  G Y++   N+ G   A+  L+V    PD PA 
Sbjct: 54  MKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV-DKPDPPAG 106

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 68.5 bits (168), Expect = 5e-14
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 12/91 (13%)

Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL 505
            P   +  E      G +V L  KV G       W K  K+I+  +   +  N ++ S L
Sbjct: 7   GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVE-NSENGSKL 65

Query: 506 ----------GTYTCEAVNCMGAAFSTSRVI 526
                     G YT    N +G+  +   + 
Sbjct: 66  TILAARQEHCGCYTLLVENKLGSRQAQVNLT 96

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 76  GDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 134
               I      +  N +  ++L I   R++  G Y++   N+ G   A+  L+V    PD
Sbjct: 44  FRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV-DKPD 102

Query: 135 APAF 138
            PA 
Sbjct: 103 PPAG 106

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 3/95 (3%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
            P  I+  E+ K + G S  L  +V          W      ++ S+   +      G  
Sbjct: 7   GPQIIQFPEDQKVRAGESVELFGKVTGTQPIT-CTWMKFRKQIQESEHMKVENSE-NGSK 64

Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL 644
           + I        G +  +  +  G +Q +   + V+
Sbjct: 65  LTILAARQEHCGCYTLLVENKLGSRQ-AQVNLTVV 98

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 11/65 (16%)

Query: 2  GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
          G       W K  K+I+  +   +  N ++ S L          G YT    N +G+  +
Sbjct: 33 GTQPITCTWMKFRKQIQESEHMKVE-NSENGSKLTILAARQEHCGCYTLLVENKLGSRQA 91

Query: 52 TSRVI 56
             + 
Sbjct: 92 QVNLT 96

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 86.1 bits (213), Expect = 2e-19
 Identities = 31/180 (17%), Positives = 63/180 (35%), Gaps = 19/180 (10%)

Query: 756 KSCQATVNEEFKFTVQVSI--SPEPKVSWFR--DDQQVVESDNVKILKET------LGVC 805
                 + ++    +           + W +  D +++ +    K   +           
Sbjct: 7   LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG 66

Query: 806 HLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVN 865
            LKI  L+  DQ  +K    +  G+++      L + +   KPK       +        
Sbjct: 67  TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPK-------ISWTCINTT 119

Query: 866 LECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
           L C+V+    P L  ++DG+ LK     ++I+ +  T     + C A N +   SS   +
Sbjct: 120 LTCEVMNGTDPELNLYQDGKHLKLS--QRVITHKWTTSLSAKFKCTAGNKVSKESSVEPV 177

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 81.1 bits (200), Expect = 1e-17
 Identities = 29/193 (15%), Positives = 62/193 (32%), Gaps = 31/193 (16%)

Query: 554 IKEVENVKAKIGTSAILECQVLVPPWP-RSIYWY------------NKEGVVEASDKYHI 600
           I         +G    L+            I W              ++   +  D Y +
Sbjct: 3   ITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKL 62

Query: 601 MADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAY-VHVLMPKNYRKPRFVESLK 659
             +G    +++I +L+  D   +K     + G       + + +       KP+      
Sbjct: 63  FKNG----TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQER--VSKPK------ 110

Query: 660 AVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD---VYQLTGTSSLGSYCCVAKNVM 716
            +       +  C+V+    P L  ++D + LK       ++ T + S   + C A N +
Sbjct: 111 -ISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTSLS-AKFKCTAGNKV 168

Query: 717 GKAESSTQLTIED 729
            K  S   ++  +
Sbjct: 169 SKESSVEPVSCPE 181

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 76.8 bits (189), Expect = 4e-16
 Identities = 27/179 (15%), Positives = 57/179 (31%), Gaps = 20/179 (11%)

Query: 358 DIAVKVGTRARLLVEIRSPTEIK--IHWYRNDRKLEENKIYR---TQHDGNFYFID---- 408
           +    +G    L +     ++    I W +   K +  +  +   T  + + Y +     
Sbjct: 8   ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGT 67

Query: 409 --LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSL 466
             +  +   D   +     +  G++       + + +    P        I       +L
Sbjct: 68  LKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPK-------ISWTCINTTL 120

Query: 467 ECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRV 525
            C+VM    P+L  Y+D K +K      +  +    S    + C A N +    S   V
Sbjct: 121 TCEVMNGTDPELNLYQDGKHLKLSQ--RVITHKWTTSLSAKFKCTAGNKVSKESSVEPV 177

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 65.7 bits (160), Expect = 2e-12
 Identities = 27/193 (13%), Positives = 70/193 (36%), Gaps = 25/193 (12%)

Query: 251 DIAVKVGTRARLLVEIRSPT----EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDG 306
           +    +G    L +     +    +IK +   +      FR + +     + ++ + ++G
Sbjct: 8   ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYK-LFKNG 66

Query: 307 RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTR 366
              L I+ ++ DD   Y V+  +  G +  +    ++ Q   +   I             
Sbjct: 67  --TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISW-------TCIN 117

Query: 367 ARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN 426
             L  E+ + T+ +++ Y++ + L+ ++            +     +   S ++ C A N
Sbjct: 118 TTLTCEVMNGTDPELNLYQDGKHLKLSQR-----------VITHKWTTSLSAKFKCTAGN 166

Query: 427 AVGRSHCSCELSV 439
            V +      +S 
Sbjct: 167 KVSKESSVEPVSC 179

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 24/203 (11%), Positives = 63/203 (31%), Gaps = 35/203 (17%)

Query: 144 DIAVKVGTRARLLVEIRSPT----EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDG 199
           +    +G    L +     +    +IK +   +      FR + +     + ++ + ++G
Sbjct: 8   ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYK-LFKNG 66

Query: 200 RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTR 259
              L I+ ++ DD   Y V+  +  G +  +    ++ Q   +   I             
Sbjct: 67  --TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISW-------TCIN 117

Query: 260 ARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDD 319
             L  E+ + T+ +     +                      +    R  +   +     
Sbjct: 118 TTLTCEVMNGTDPELNLYQDGK-------------------HLKLSQR--VITHKWTTSL 156

Query: 320 GGRYSVTASNESGYSTAKFELSV 342
             ++  TA N+    ++   +S 
Sbjct: 157 SAKFKCTAGNKVSKESSVEPVSC 179

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 19/171 (11%), Positives = 48/171 (28%), Gaps = 29/171 (16%)

Query: 65  DNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKF 124
            +D     + + +   F  +           L I+ ++ DD   Y V+  +  G +  + 
Sbjct: 38  TSDKKKIAQFRKEKETFKEKDT-YKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEK 96

Query: 125 ELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD 184
              ++ Q   +   I               L  E+ + T+ +     +            
Sbjct: 97  IFDLKIQERVSKPKISW-------TCINTTLTCEVMNGTDPELNLYQDGK---------- 139

Query: 185 HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
                     +    R  +   +       ++  TA N+    ++   +S 
Sbjct: 140 ---------HLKLSQR--VITHKWTTSLSAKFKCTAGNKVSKESSVEPVSC 179

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 81.7 bits (202), Expect = 1e-18
 Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 21/120 (17%)

Query: 719 AESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEP 778
             S +   ++                  +    IE L+           F  ++S +   
Sbjct: 1   GSSGSSGLVQG-----------------RRVHIIEDLEDVDVQEGSSATFRCRISPANYE 43

Query: 779 KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
            V WF D   +  ++  +I  +  G   L +  L + D       A    G    S  L+
Sbjct: 44  PVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALR 99

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 81.3 bits (201), Expect = 2e-18
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 15/91 (16%)

Query: 846 KKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC 904
           ++   +E+L+ V + EG +    C++       + WF D   L A ++++I +   G   
Sbjct: 12  RRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHV 71

Query: 905 L----------GIYTCEAHNCMGTTSSSAAL 925
           L          G    EA    G   +SAAL
Sbjct: 72  LTLRQLALKDSGTIYFEA----GDQRASAAL 98

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 72.8 bits (179), Expect = 2e-15
 Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 12/120 (10%)

Query: 335 TAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENK 394
           ++     V+ +       I  L D+ V+ G+ A     I       +HW+ +   L  N+
Sbjct: 2   SSGSSGLVQGR---RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANE 58

Query: 395 IYRTQ-HDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKE 453
           +       G ++ + L  ++L DSG     A    G    S  L V          F++ 
Sbjct: 59  LNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEK----PSVFSRS 110

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 68.6 bits (168), Expect = 5e-14
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 19/95 (20%)

Query: 650 RKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT----GTSS 704
           R+   +E L+ V   +G   +F C++       + WF D   L   ++ ++     G   
Sbjct: 12  RRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHV 71

Query: 705 L----------GSYCCVAKNVMGKAESSTQLTIED 729
           L          G+    A    G   +S  L + +
Sbjct: 72  LTLRQLALKDSGTIYFEA----GDQRASAALRVTE 102

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 65.9 bits (161), Expect = 4e-13
 Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 15/91 (16%)

Query: 433 CSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGD 491
                 V            ++LE +  ++G + +  C++       + W+ D   + A +
Sbjct: 3   SGSSGLVQGR----RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANE 58

Query: 492 IFALTANPKDPSSL----------GTYTCEA 512
           +  + A P     L          GT   EA
Sbjct: 59  LNEIDAQPGGYHVLTLRQLALKDSGTIYFEA 89

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 62.0 bits (151), Expect = 8e-12
 Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 1/89 (1%)

Query: 543 SLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMA 602
           S +  G     I+++E+V  + G+SA   C++    +   ++W+  +  + A++   I A
Sbjct: 6   SGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYE-PVHWFLDKTPLHANELNEIDA 64

Query: 603 DGLGGYSIEINYLEAVDDGEWKCVATSSS 631
              G + + +  L   D G     A    
Sbjct: 65  QPGGYHVLTLRQLALKDSGTIYFEAGDQR 93

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 22/132 (16%), Positives = 37/132 (28%), Gaps = 23/132 (17%)

Query: 121 TAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFR 180
           ++     V+ +       I  L D+ V+ G+ A     I         + L+        
Sbjct: 2   SSGSSGLVQGR---RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLD-------- 50

Query: 181 AQGDHPIF-GNRFRAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 238
                P+          + G    L +R++   D G     A    G   A   L V  +
Sbjct: 51  ---KTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEK 103

Query: 239 VPDAPAFIRRLH 250
                 F R   
Sbjct: 104 ---PSVFSRSGP 112

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 22/132 (16%), Positives = 37/132 (28%), Gaps = 23/132 (17%)

Query: 228 TAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFR 287
           ++     V+ +       I  L D+ V+ G+ A     I         + L+        
Sbjct: 2   SSGSSGLVQGR---RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLD-------- 50

Query: 288 AQGDHPIF-GNRFRAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
                P+          + G    L +R++   D G     A    G   A   L V  +
Sbjct: 51  ---KTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEK 103

Query: 346 VPDAPAFIRRLH 357
                 F R   
Sbjct: 104 ---PSVFSRSGP 112

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 10/51 (19%)

Query: 2  GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEA 42
                + W+ D   + A ++  + A P     L          GT   EA
Sbjct: 39 PANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA 89

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 86.8 bits (214), Expect = 1e-18
 Identities = 52/323 (16%), Positives = 89/323 (27%), Gaps = 76/323 (23%)

Query: 447 APFFTKE-LEAILTEQGTVSLECKVMGI-PTPQLI---WYKDNKKIKAGDIFALTANPKD 501
           A   + +  +         +L   V G  P P  +   W KD++     +   LT     
Sbjct: 2   AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPH-ENNTATLTVADAT 60

Query: 502 PSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVK 561
             + G+Y     +        S V                  LM      + I E ++  
Sbjct: 61  SENAGSYKVTVQDTDTMTSVESEVF-----------------LMEEAELIVNITEPQHFY 103

Query: 562 AKIGTSAILECQVLV-------PPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINY 614
               T   L   V           +     W   E V++                I I  
Sbjct: 104 VSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVID------------TTQDITIQE 151

Query: 615 LEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKV 674
             A  +G +       S     SA+   +L   N  +   VES    + ++  +S    V
Sbjct: 152 FTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQD-VVESKTVALGNE--ISLNYVV 208

Query: 675 --------VGFPTPTL--QWFKDNE-ELKP----------GDVYQLTGTSSL-------- 705
                    G P  T+   W+   E +L P           + + +T    L        
Sbjct: 209 SEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYD 268

Query: 706 --GSYCCVAKNVMGKAESSTQLT 726
               + CVAK      + + ++ 
Sbjct: 269 DTAKFWCVAKLYQQIEDETVEVA 291

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 83.0 bits (204), Expect = 2e-17
 Identities = 46/299 (15%), Positives = 84/299 (28%), Gaps = 35/299 (11%)

Query: 61  QSFLDNDDVPFN-RAQGDHPIFGNRFRAINRDGR------TELNIRRVRRDDGGRYSVTA 113
           + FL  D         GD P+  N      +D +        L +     ++ G Y VT 
Sbjct: 12  RCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLTVADATSENAGSYKVTV 71

Query: 114 SNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNN 173
            +    ++ + E+ +  +       I       V   T   L   ++         +   
Sbjct: 72  QDTDTMTSVESEVFLMEEAE-LIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYEL 130

Query: 174 TIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFEL 233
              +S    G+  I          D   ++ I+    D  G Y+V    ES  S A    
Sbjct: 131 HYSWSK---GEDVI----------DTTQDITIQEFTADKNGVYTVKVWGESEDSAASAST 177

Query: 234 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHP 293
            +   +         +    V +G    L   +            N TI +++  Q +  
Sbjct: 178 KI--MLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQ 235

Query: 294 IF----------GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
           +                +I  DG   L       DD  ++   A           E++ 
Sbjct: 236 LSPTLIGSEVGEALEGFSITPDGH--LFKESATYDDTAKFWCVAKLYQQIEDETVEVAA 292

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 82.6 bits (203), Expect = 4e-17
 Identities = 43/301 (14%), Positives = 87/301 (28%), Gaps = 46/301 (15%)

Query: 173 NTIPFSFRAQGDHPIFGNRFRAINRDGR------TELNIRRVRRDDGGRYSVTASNESGY 226
           +    +    GD P+  N      +D +        L +     ++ G Y VT  +    
Sbjct: 18  DGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLTVADATSENAGSYKVTVQDTDTM 77

Query: 227 STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSF 286
           ++ + E+ +  +       I       V   T   L   ++         +      +S 
Sbjct: 78  TSVESEVFLMEEAE-LIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSK 136

Query: 287 RAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV 346
              G+  I          D   ++ I+    D  G Y+V    ES  S A     +   +
Sbjct: 137 ---GEDVI----------DTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKI--ML 181

Query: 347 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTE----------IKIHWYRN---------- 386
                    +    V +G    L   +               IK +WY            
Sbjct: 182 ATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLI 241

Query: 387 -DRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAY 445
                E  + +    DG+ +     S +  D+ ++ C+A+        + E++    +  
Sbjct: 242 GSEVGEALEGFSITPDGHLF---KESATYDDTAKFWCVAKLYQQIEDETVEVAASTSRKC 298

Query: 446 K 446
            
Sbjct: 299 S 299

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 79.5 bits (195), Expect = 4e-16
 Identities = 37/292 (12%), Positives = 75/292 (25%), Gaps = 61/292 (20%)

Query: 280 NTIPFSFRAQGDHPIFGNRFRAINRDGR------TELNIRRVRRDDGGRYSVTASNESGY 333
           +    +    GD P+  N      +D +        L +     ++ G Y VT  +    
Sbjct: 18  DGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLTVADATSENAGSYKVTVQDTDTM 77

Query: 334 STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR--------SPTEIKIHWYR 385
           ++ + E+ +  +       I       V   T   L   ++           E+   W +
Sbjct: 78  TSVESEVFLMEEAE-LIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSK 136

Query: 386 NDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAY 445
            +  ++  +              +   +   +G +T         S  S    +++    
Sbjct: 137 GEDVIDTTQDIT-----------IQEFTADKNGVYTVKVWGESEDSAASASTKIMLATM- 184

Query: 446 KAPFFTKELEAILTEQGTVSLECKV----------MGIPTPQLIWYKDNKKIKA------ 489
                       +     +SL   V          M   T +  WY   +   +      
Sbjct: 185 -NVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGS 243

Query: 490 --------------GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIA 527
                         G +F  +A   D      + C A         T  V A
Sbjct: 244 EVGEALEGFSITPDGHLFKESATYDDT---AKFWCVAKLYQQIEDETVEVAA 292

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 76.0 bits (186), Expect = 5e-15
 Identities = 40/269 (14%), Positives = 70/269 (26%), Gaps = 40/269 (14%)

Query: 2   GIPTPQLI---WYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIAR 58
             P P  +   W KD++     +   LT       + G+Y     +        S V   
Sbjct: 29  DEPLPSNLTYTWTKDDQPH-ENNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLM 87

Query: 59  GQQSFLDNDDVPFN----------------RAQGDHPIFGNRFR------AINRDGRTEL 96
            +   + N   P +                 + G  P                 D   ++
Sbjct: 88  EEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDI 147

Query: 97  NIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLL 156
            I+    D  G Y+V    ES  S A     +   +         +    V +G    L 
Sbjct: 148 TIQEFTADKNGVYTVKVWGESEDSAASASTKI--MLATMNVDQDVVESKTVALGNEISLN 205

Query: 157 VEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF----------GNRFRAINRDGRTELNIR 206
             +            N TI +++  Q +  +                +I  DG   L   
Sbjct: 206 YVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGH--LFKE 263

Query: 207 RVRRDDGGRYSVTASNESGYSTAKFELSV 235
               DD  ++   A           E++ 
Sbjct: 264 SATYDDTAKFWCVAKLYQQIEDETVEVAA 292

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 75.2 bits (184), Expect = 1e-14
 Identities = 39/302 (12%), Positives = 83/302 (27%), Gaps = 71/302 (23%)

Query: 668 VSFECKVVG-FPTP---TLQWFKDNEELKP-GDVYQLTGTSSL--GSYCCVAKNVMGKAE 720
            +    V G  P P   T  W KD++  +       +   +S   GSY    ++      
Sbjct: 20  FTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLTVADATSENAGSYKVTVQDTDTMTS 79

Query: 721 SSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSIS----- 775
             +               ++ L+   +    I   +    +   + +    V  S     
Sbjct: 80  VES---------------EVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTP 124

Query: 776 ---PEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSI 832
               E   SW + +  +  + +            + I          +      +   S 
Sbjct: 125 ADNYELHYSWSKGEDVIDTTQD------------ITIQEFTADKNGVYTVKVWGESEDSA 172

Query: 833 TSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVI--------GVPQPTLK--WF- 881
            S   K+ +         +E      + G  ++L   V         G+P  T+K  W+ 
Sbjct: 173 ASASTKIMLATMNVDQDVVESKTV--ALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYL 230

Query: 882 -KDGR---ELKAGDIHKIISG----EDGTCCL--------GIYTCEAHNCMGTTSSSAAL 925
            ++G+    L   ++ + + G     DG              + C A         +  +
Sbjct: 231 QREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEV 290

Query: 926 LG 927
             
Sbjct: 291 AA 292

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 74.5 bits (182), Expect = 2e-14
 Identities = 37/339 (10%), Positives = 81/339 (23%), Gaps = 69/339 (20%)

Query: 550 APIFIKEVENVKAKIGTSAILECQV---LVPPWPRSIYWYNKEGVVEASDKYHIMADGLG 606
           A     +        G    L   V      P   +  W  K+     +           
Sbjct: 2   AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWT-KDDQPHEN----------N 50

Query: 607 GYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG 666
             ++ +    + + G +K     +  +    +    +           +   +       
Sbjct: 51  TATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEA---ELIVNITEPQHFYVSSQ 107

Query: 667 L-VSFECKVV---GFPTP-----TLQWFKDNEELKPGDVYQLTGTSSL--GSYCCVAKNV 715
             V     V    G            W K  + +       +   ++   G Y       
Sbjct: 108 TDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGE 167

Query: 716 MGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIE--GLKSCQATVNEEFKFTVQVS 773
              + +S    I                    A   ++   ++S    +  E      VS
Sbjct: 168 SEDSAASASTKI------------------MLATMNVDQDVVESKTVALGNEISLNYVVS 209

Query: 774 I----------SPEPKVSWF--RDDQQVVESDNVKILKETLGVC-----HLKIHALEVAD 816
                      +   K +W+  R+ Q        ++ +   G       HL   +    D
Sbjct: 210 EDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDD 269

Query: 817 QAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK 855
            A++ C+A         +    + V     +   +E +K
Sbjct: 270 TAKFWCVAKLYQQIEDET----VEVAASTSRKCSMEVVK 304

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 71.8 bits (175), Expect = 1e-13
 Identities = 26/193 (13%), Positives = 49/193 (25%), Gaps = 30/193 (15%)

Query: 748 APKFIEGLKSCQATVNEEFKFTVQVS-ISPEPK---VSWFRDDQQVVESDNVKILKETLG 803
           A               + F  T  V+   P P     +W +DDQ    +           
Sbjct: 2   AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTA--------- 52

Query: 804 VCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGA 863
              L +      +   +K    +    +     +   + +        E     +S    
Sbjct: 53  --TLTVADATSENAGSYKVTVQDTDTMTSVESEV-FLMEEAELIVNITEPQHFYVSSQTD 109

Query: 864 VNLECKVI---GVPQP-----TLKWFKDGRELKAGDIHKI--ISGEDGTCCLGIYTCEAH 913
           V L   V    G            W K    +       I   + +      G+YT +  
Sbjct: 110 VELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITIQEFTADKN----GVYTVKVW 165

Query: 914 NCMGTTSSSAALL 926
                +++SA+  
Sbjct: 166 GESEDSAASASTK 178

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 80.4 bits (199), Expect = 2e-18
 Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
                 ++     + G   + + +I       ++ WY   R+LE ++ Y   ++     +
Sbjct: 1   GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAIL 60

Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
            +  ++  D G + C   N  G      EL V
Sbjct: 61  YVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 80.4 bits (199), Expect = 2e-18
 Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 13/91 (14%)

Query: 848 PKFLEELK-AVLSEGGAVNLECKVIGVPQPT-LKWFKDGRELKAGDIHKIISGEDGTCCL 905
                ++  AV  EGG V   CK+    Q T + W+   R+L+  + ++I   EDG   L
Sbjct: 2   AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITY-EDGVAIL 60

Query: 906 ----------GIYTCEAHNCMGTTSSSAALL 926
                     G Y C+  N  G  SS A L 
Sbjct: 61  YVKDITKLDDGTYRCKVVNDYGEDSSYAELF 91

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 76.2 bits (188), Expect = 5e-17
 Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 2/92 (2%)

Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEP-KVSWFRDDQQVVESDNVKILKETLGVCH 806
                  +           K+  ++    +  +V+W+   +Q+  S+  +I  E  GV  
Sbjct: 1   GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYED-GVAI 59

Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
           L +  +   D   ++C   ND+G+  +   L 
Sbjct: 60  LYVKDITKLDDGTYRCKVVNDYGEDSSYAELF 91

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 75.0 bits (185), Expect = 1e-16
 Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 15/95 (15%)

Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPT-LQWFKDNEELKPGDVYQLT---GTSSL- 705
                 +   + ++G  V + CK+  +   T + W+    +L+  + Y++T   G + L 
Sbjct: 2   AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILY 61

Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIEDIR 731
                    G+Y C   N  G+  S  +L ++ +R
Sbjct: 62  VKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVR 96

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 67.3 bits (165), Expect = 7e-14
 Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 1/89 (1%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
             +   ++ +   + G      C++        + WY     +E S+KY I  +  G   
Sbjct: 1   GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYED-GVAI 59

Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSA 638
           + +  +  +DDG ++C   +  G     A
Sbjct: 60  LYVKDITKLDDGTYRCKVVNDYGEDSSYA 88

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 67.0 bits (164), Expect = 1e-13
 Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 13/97 (13%)

Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIPTP-QLIWYKDNKKIKAGDIFALTANPKDPSS 504
               + ++   + E+G  V   CK+       Q+ WY   ++++  + + +T      + 
Sbjct: 1   GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYED-GVAI 59

Query: 505 L----------GTYTCEAVNCMGAAFSTSRVIARGQQ 531
           L          GTY C+ VN  G   S + +  +G +
Sbjct: 60  LYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVR 96

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 15/106 (14%), Positives = 34/106 (32%), Gaps = 17/106 (16%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR---SPTEIKCQFDLNNTIPFSFRAQGDHPIF-GN 190
                 ++     + G   + + +I      T++   F                 +    
Sbjct: 1   GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFG-------------VRQLENSE 47

Query: 191 RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
           ++     DG   L ++ + + D G Y     N+ G  ++  EL V+
Sbjct: 48  KYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVK 93

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 15/106 (14%), Positives = 34/106 (32%), Gaps = 17/106 (16%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR---SPTEIKCQFDLNNTIPFSFRAQGDHPIF-GN 297
                 ++     + G   + + +I      T++   F                 +    
Sbjct: 1   GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFG-------------VRQLENSE 47

Query: 298 RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
           ++     DG   L ++ + + D G Y     N+ G  ++  EL V+
Sbjct: 48  KYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVK 93

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 76  GDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
           G   +    ++     DG   L ++ + + D G Y     N+ G  ++  EL V+
Sbjct: 39  GVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVK 93

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 12/71 (16%)

Query: 2  GIPTP-QLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAF 50
                Q+ WY   ++++  + + +T      + L          GTY C+ VN  G   
Sbjct: 27 NYDQSTQVTWYFGVRQLENSEKYEITYED-GVAILYVKDITKLDDGTYRCKVVNDYGEDS 85

Query: 51 STSRVIARGQQ 61
          S + +  +G +
Sbjct: 86 SYAELFVKGVR 96

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 80.2 bits (198), Expect = 3e-18
 Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 15/93 (16%)

Query: 848 PKFLEELKAVLS-----EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGT 902
           P +    K             V   C   G P PT++W K+G+E K           +  
Sbjct: 5   PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 64

Query: 903 CCL----------GIYTCEAHNCMGTTSSSAAL 925
             L          G YTC   N  G+ + +  L
Sbjct: 65  WSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 97

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 73.2 bits (180), Expect = 7e-16
 Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 19/99 (19%)

Query: 648 NYRKPRFVESLKAVMTDDGL-----VSFECKVVGFPTPTLQWFKDNEELKPGDVYQ---- 698
           N R P +  + K       +     V F C   G P PT++W K+ +E K          
Sbjct: 1   NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKV 60

Query: 699 LTGTSSL----------GSYCCVAKNVMGKAESSTQLTI 727
                SL          G+Y CV +N  G    +  L +
Sbjct: 61  RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 69.4 bits (170), Expect = 1e-14
 Identities = 22/96 (22%), Positives = 31/96 (32%), Gaps = 15/96 (15%)

Query: 446 KAPFFTKELEAILTEQ-----GTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPK 500
           +AP++T   +            TV   C   G P P + W K+ K+ K            
Sbjct: 3   RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62

Query: 501 DPSSL----------GTYTCEAVNCMGAAFSTSRVI 526
              SL          G YTC   N  G+   T  + 
Sbjct: 63  QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 69.0 bits (169), Expect = 2e-14
 Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 745 NNKAPKFIEGLK----SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKE 800
           N +AP +    K              KF      +P P + W ++ ++  +   +   K 
Sbjct: 1   NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKV 60

Query: 801 TLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
                 L + ++  +D+  + C+  N++G    +  L 
Sbjct: 61  RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 68.2 bits (167), Expect = 4e-14
 Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 7/98 (7%)

Query: 349 APAFIR----RLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEEN-KIYRTQHDG 402
           AP +           AV      +       +P    + W +N ++ ++  +I   +   
Sbjct: 4   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPM-PTMRWLKNGKEFKQEHRIGGYKVRN 62

Query: 403 NFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
             + + + SV   D G +TC+ EN  G  + +  L V+
Sbjct: 63  QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 53.2 bits (128), Expect = 8e-09
 Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 8/100 (8%)

Query: 550 APIFIKEVENVKAKI----GTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADG 604
           AP +    +  K         +    C     P P ++ W  K G   +   +       
Sbjct: 4   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMP-TMRWL-KNGKEFKQEHRIGGYKVR 61

Query: 605 LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL 644
              +S+ +  +   D G + CV  +  G    +  ++ V+
Sbjct: 62  NQHWSLIMESVVPSDKGNYTCVVENEYGSINHT-YHLDVV 100

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 50.1 bits (120), Expect = 8e-08
 Identities = 16/65 (24%), Positives = 21/65 (32%), Gaps = 10/65 (15%)

Query: 2  GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
          G P P + W K+ K+ K               SL          G YTC   N  G+   
Sbjct: 34 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 93

Query: 52 TSRVI 56
          T  + 
Sbjct: 94 TYHLD 98

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 18/107 (16%), Positives = 28/107 (26%), Gaps = 17/107 (15%)

Query: 135 APAFIR----RLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF 188
           AP +           AV      +       +P   ++   +         R  G     
Sbjct: 4   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKN-GKEFKQEHRIGGYK--- 59

Query: 189 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
                   R+    L +  V   D G Y+    NE G     + L V
Sbjct: 60  -------VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 18/107 (16%), Positives = 28/107 (26%), Gaps = 17/107 (15%)

Query: 242 APAFIR----RLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF 295
           AP +           AV      +       +P   ++   +         R  G     
Sbjct: 4   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKN-GKEFKQEHRIGGYK--- 59

Query: 296 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
                   R+    L +  V   D G Y+    NE G     + L V
Sbjct: 60  -------VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 11/47 (23%), Positives = 15/47 (31%)

Query: 82  GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
                   R+    L +  V   D G Y+    NE G     + L V
Sbjct: 53  HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 77.4 bits (190), Expect = 4e-16
 Identities = 30/185 (16%), Positives = 54/185 (29%), Gaps = 28/185 (15%)

Query: 760 ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDN------VKILKETL--GVCHLKIHA 811
             V                ++   R   Q VE+D         +L+E L  G     I +
Sbjct: 14  VDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPS 73

Query: 812 LEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVI 871
           ++V D  +++C+             +K+         + LE     +   G V L C+  
Sbjct: 74  VQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILE-----VPGTGEVQLTCQAR 128

Query: 872 GVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL-----------GIYTCEAHNCMGTTS 920
           G P   + W               I   +G   +             ++C   N      
Sbjct: 129 GYPLAEVSWQNVSVPAN----TSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKEL 184

Query: 921 SSAAL 925
           +SA +
Sbjct: 185 TSAII 189

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 70.8 bits (173), Expect = 6e-14
 Identities = 29/185 (15%), Positives = 57/185 (30%), Gaps = 23/185 (12%)

Query: 359 IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIY----RTQ------HDGNFYFID 408
             V VG+   L  +       ++   R   +  EN       R          G   F  
Sbjct: 12  YTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFH- 70

Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLEC 468
           + SV + DSG++ CL        +    +     K   +          +   G V L C
Sbjct: 71  IPSVQVRDSGQYRCLVICGAAWDYKYLTV-----KVKASYMRIDTRILEVPGTGEVQLTC 125

Query: 469 KVMGIPTPQLIWYKDNKKIK------AGDIFALTANPK-DPSSLGTYTCEAVNCMGAAFS 521
           +  G P  ++ W   +             ++ +T+  +  P     ++C   N      +
Sbjct: 126 QARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELT 185

Query: 522 TSRVI 526
           ++ + 
Sbjct: 186 SAIID 190

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 56.2 bits (135), Expect = 6e-09
 Identities = 24/190 (12%), Positives = 46/190 (24%), Gaps = 46/190 (24%)

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQ------------LTGTSSL---------- 705
           VS EC         L+  + + +    D                 G +            
Sbjct: 20  VSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDS 79

Query: 706 GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEE 765
           G Y C+             + ++     +                        +     E
Sbjct: 80  GQYRCLVICGAAWDYKYLTVKVKASYMRIDTR-------------------ILEVPGTGE 120

Query: 766 FKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIH-ALEVADQAEWKCIA 824
            + T Q    P  +VSW         S     ++   G+  +     L+      + C+ 
Sbjct: 121 VQLTCQARGYPLAEVSWQNVSVPANTS----HIRTPEGLYQVTSVLRLKPQPSRNFSCMF 176

Query: 825 TNDFGQSITS 834
            N   + +TS
Sbjct: 177 WNAHMKELTS 186

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 41.2 bits (96), Expect = 6e-04
 Identities = 13/99 (13%), Positives = 22/99 (22%), Gaps = 28/99 (28%)

Query: 860 EGGAVNLECKVIGVPQPTLKWFKDGRELKAGD-----------------------IHKII 896
            G +V+LEC         L+  +   +    D                       I   +
Sbjct: 16  VGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPS-V 74

Query: 897 SGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKSQIE 935
              D     G Y C              +       +I+
Sbjct: 75  QVRDS----GQYRCLVICGAAWDYKYLTVKVKASYMRID 109

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 86.3 bits (213), Expect = 3e-18
 Identities = 34/193 (17%), Positives = 57/193 (29%), Gaps = 26/193 (13%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLK 808
           P     + +    V ++     QV      +  W   + +   +        +LG     
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLG--LTL 216

Query: 809 IHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLEC 868
            +     ++    C A ND G++  S  + ++ P   +             E     +  
Sbjct: 217 ANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTA--------VEMHHWCIPF 268

Query: 869 KVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTC------CL----------GIYTCEA 912
            V G P P+L+W  +G  L           E          CL          G YT  A
Sbjct: 269 SVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLA 328

Query: 913 HNCMGTTSSSAAL 925
            N  G  S+S   
Sbjct: 329 ANPFGQASASIMA 341

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 85.9 bits (212), Expect = 5e-18
 Identities = 32/193 (16%), Positives = 57/193 (29%), Gaps = 25/193 (12%)

Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL 409
           P    ++ + +V VG    L  ++      +  W   + +     +           +  
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL-A 217

Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECK 469
           +  S  +    TC AEN VGR+  S +++V  P + +             E     +   
Sbjct: 218 NVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTA--------VEMHHWCIPFS 269

Query: 470 VMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------------GTYTCEAV 513
           V G P P L W  +   +               +                  G YT  A 
Sbjct: 270 VDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA 329

Query: 514 NCMGAAFSTSRVI 526
           N  G A ++    
Sbjct: 330 NPFGQASASIMAA 342

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 85.9 bits (212), Expect = 6e-18
 Identities = 36/203 (17%), Positives = 57/203 (28%), Gaps = 36/203 (17%)

Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY--NKEGVVEASDKYHIMADGLG 606
             P    +V N    +G   +L CQV          W     E          + + GL 
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLE-QAGWILTELEQSATVMKSGGLPSLGL- 214

Query: 607 GYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG 666
                 N    ++     C A +  G  + S   V+V  P + +             +  
Sbjct: 215 ---TLANVTSDLNRKNVTCWAENDVGRAEVSV-QVNVSFPASVQLH--------TAVEMH 262

Query: 667 LVSFECKVVGFPTPTLQWFKDNEELKPGD----------VYQLTGTSSL----------G 706
                  V G P P+L+W  +   L                +      L          G
Sbjct: 263 HWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG 322

Query: 707 SYCCVAKNVMGKAESSTQLTIED 729
           +Y  +A N  G+A +S      D
Sbjct: 323 NYTLLAANPFGQASASIMAAFMD 345

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 82.1 bits (202), Expect = 9e-17
 Identities = 29/193 (15%), Positives = 53/193 (27%), Gaps = 40/193 (20%)

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGD------------VYQLTGTSSLGSYCCVAKNV 715
           V   C+V G       W     E                 +  +T   +  +  C A+N 
Sbjct: 176 VLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAEND 235

Query: 716 MGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSIS 775
           +G+AE S Q+                         F   ++   A     +     V   
Sbjct: 236 VGRAEVSVQVN----------------------VSFPASVQLHTAVEMHHWCIPFSVDGQ 273

Query: 776 PEPKVSWFRDDQQVVESDNVKILKETLGVCH------LKIHALEVADQAEWKCIATNDFG 829
           P P + W  +   + E+  +                 L+++     +   +  +A N FG
Sbjct: 274 PAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG 333

Query: 830 QSITSCFLKLNVP 842
           Q+  S        
Sbjct: 334 QASASIMAAFMDN 346

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 73.6 bits (180), Expect = 6e-14
 Identities = 41/288 (14%), Positives = 72/288 (25%), Gaps = 59/288 (20%)

Query: 390 LEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTC--------------LAENAVGRSHCSC 435
           L  N +  +        + L  + L  +    C              L      +  C  
Sbjct: 87  LSFNAL-ESLSWKTVQGLSLQELVLSGN-PLHCSCALRWLQRWEEEGLGGVPEQKLQCHG 144

Query: 436 ELSVLVPKAYKA--PFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKA--- 489
           +  +          P    ++     + G  V L C+V G    Q  W     +  A   
Sbjct: 145 QGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM 204

Query: 490 -----GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSL 544
                  +    AN     +    TC A N +G A  + +V                   
Sbjct: 205 KSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVN------------------ 246

Query: 545 MPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADG 604
                   F   V+   A       +   V   P P S+ W     V+  +         
Sbjct: 247 ------VSFPASVQLHTAVEMHHWCIPFSVDGQPAP-SLRWLFNGSVLNETSFIFTEFLE 299

Query: 605 LGGY------SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
                      + +N    V++G +  +A +  G    S      +  
Sbjct: 300 PAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS-IMAAFMDN 346

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 72.1 bits (176), Expect = 2e-13
 Identities = 18/159 (11%), Positives = 44/159 (27%), Gaps = 15/159 (9%)

Query: 291 DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 350
           +        ++                 +    +  A N+ G +    +++V        
Sbjct: 196 ELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV-------- 247

Query: 351 AFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYF---- 406
           +F   +            +   +       + W  N   L E     T+           
Sbjct: 248 SFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVR 307

Query: 407 ---IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
              + L+  +  ++G +T LA N  G++  S   + +  
Sbjct: 308 HGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 346

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.4 bits (138), Expect = 1e-08
 Identities = 17/159 (10%), Positives = 43/159 (27%), Gaps = 11/159 (6%)

Query: 77  DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 136
           +        ++                 +    +  A N+ G +    +++V        
Sbjct: 196 ELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQL 255

Query: 137 AFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAIN 196
                +H   +      +          ++  F+ +     SF                 
Sbjct: 256 HTAVEMHHWCIPFSVDGQ------PAPSLRWLFNGSVLNETSFIFT---EFLEPAANETV 306

Query: 197 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
           R G   L + +    + G Y++ A+N  G ++A    + 
Sbjct: 307 RHG--CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 343

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.4 bits (138), Expect = 1e-08
 Identities = 17/159 (10%), Positives = 43/159 (27%), Gaps = 11/159 (6%)

Query: 184 DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 243
           +        ++                 +    +  A N+ G +    +++V        
Sbjct: 196 ELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQL 255

Query: 244 AFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAIN 303
                +H   +            +    ++  F+ +     SF                 
Sbjct: 256 HTAVEMHHWCIPFSVDG------QPAPSLRWLFNGSVLNETSFIFT---EFLEPAANETV 306

Query: 304 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
           R G   L + +    + G Y++ A+N  G ++A    + 
Sbjct: 307 RHG--CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 343

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 56.3 bits (135), Expect = 2e-08
 Identities = 24/160 (15%), Positives = 42/160 (26%), Gaps = 33/160 (20%)

Query: 2   GIPTPQLIWYKDNKKIKA--------GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTS 53
           G    Q  W     +  A          +    AN     +    TC A N +G A  + 
Sbjct: 184 GRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSV 243

Query: 54  RVIARGQQSFLDNDDVPFN------RAQG-----------DHPIFGNRFRAINRDGRTE- 95
           +V      S   +  V  +         G              +    F           
Sbjct: 244 QVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAAN 303

Query: 96  -------LNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
                  L + +    + G Y++ A+N  G ++A    + 
Sbjct: 304 ETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 343

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 79.7 bits (197), Expect = 4e-18
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 3/104 (2%)

Query: 343 ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDG 402
            S        ++ + D+ VK   +A    E+    ++   WY+N  ++  +K     H G
Sbjct: 2   SSGSSGQLEVLQDIADLTVKAAEQAVFKCEVSDE-KVTGKWYKNGVEVRPSKRITISHVG 60

Query: 403 NFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYK 446
            F+ + +  V   D G +T + +        S +L+ L  K   
Sbjct: 61  RFHKLVIDDVRPEDEGDYTFVPDG--YALSLSAKLNFLEIKVSG 102

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 77.0 bits (190), Expect = 4e-17
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 6/94 (6%)

Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
             + ++ +        E+  F  +VS   +    W+++  +V  S  + I         L
Sbjct: 8   QLEVLQDIADLTVKAAEQAVFKCEVS-DEKVTGKWYKNGVEVRPSKRITISHVG-RFHKL 65

Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
            I  +   D+ ++  +          S   KLN 
Sbjct: 66  VIDDVRPEDEGDYTFVPDG----YALSLSAKLNF 95

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 69.7 bits (171), Expect = 1e-14
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 15/90 (16%)

Query: 847 KPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL 905
           + + L+++  + +        +C+V    + T KW+K+G E++      I         L
Sbjct: 8   QLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISH-VGRFHKL 65

Query: 906 ----------GIYTCEAHNCMGTTSSSAAL 925
                     G YT          S SA L
Sbjct: 66  VIDDVRPEDEGDYTFVPDG--YALSLSAKL 93

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 17/95 (17%)

Query: 651 KPRFVESLKAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL- 705
           +   ++ +  +         F+C+V      T +W+K+  E++P     ++       L 
Sbjct: 8   QLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVGRFHKLV 66

Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIEDIR 731
                    G Y  V          S +L   +I+
Sbjct: 67  IDDVRPEDEGDYTFVPDG--YALSLSAKLNFLEIK 99

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 60.9 bits (148), Expect = 2e-11
 Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 8/99 (8%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGGY 608
               ++++ ++  K    A+ +C+V          WY K GV V  S +  I   G   +
Sbjct: 8   QLEVLQDIADLTVKAAEQAVFKCEVSDEKVT--GKWY-KNGVEVRPSKRITISHVG-RFH 63

Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPK 647
            + I+ +   D+G++  V    +      +A ++ L  K
Sbjct: 64  KLVIDDVRPEDEGDYTFVPDGYAL---SLSAKLNFLEIK 99

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 53.9 bits (130), Expect = 5e-09
 Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 17/118 (14%)

Query: 129 ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPI 187
            S        ++ + D+ VK   +A    E+       K   +                +
Sbjct: 2   SSGSSGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVTGKWYKN-------------GVEV 48

Query: 188 F-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA 244
               R    +     +L I  VR +D G Y+      +   +AK  L+        P+
Sbjct: 49  RPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAK--LNFLEIKVSGPS 104

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 53.9 bits (130), Expect = 5e-09
 Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 17/118 (14%)

Query: 236 ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPI 294
            S        ++ + D+ VK   +A    E+       K   +                +
Sbjct: 2   SSGSSGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVTGKWYKN-------------GVEV 48

Query: 295 F-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA 351
               R    +     +L I  VR +D G Y+      +   +AK  L+        P+
Sbjct: 49  RPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAK--LNFLEIKVSGPS 104

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 9/95 (9%), Positives = 26/95 (27%), Gaps = 13/95 (13%)

Query: 443 KAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD 501
            +       +++  +  +       +C+V         WYK+  +++      ++     
Sbjct: 4   GSSGQLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHV-GR 61

Query: 502 PSSL----------GTYTCEAVNCMGAAFSTSRVI 526
              L          G YT        +  +    +
Sbjct: 62  FHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFL 96

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 3/63 (4%)

Query: 76  GDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 134
               +    R    +     +L I  VR +D G Y+      +   +AK  L+       
Sbjct: 44  NGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAK--LNFLEIKVS 101

Query: 135 APA 137
            P+
Sbjct: 102 GPS 104

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 79.7 bits (197), Expect = 5e-18
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 10/107 (9%)

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
              F + L       G  A L  E+     ++  W +    L +   Y  + DG    + 
Sbjct: 8   PARFTQDLKTKEASEGATATLQCELSKVAPVE--WKKGPETLRDGGRYSLKQDGTRCELQ 65

Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELE 455
           +  +S+ D+G ++C+     G+   S  L+V          FT+   
Sbjct: 66  IHDLSVADAGEYSCMC----GQERTSATLTVRAL----PARFTEGSG 104

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 74.7 bits (184), Expect = 3e-16
 Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 11/109 (10%)

Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH 806
              +F + LK+ +A+         ++S      V W +  + + +     + ++    C 
Sbjct: 7   GPARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQD-GTRCE 63

Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK 855
           L+IH L VAD  E+ C+     GQ  TS  L +         +F E   
Sbjct: 64  LQIHDLSVADAGEYSCMC----GQERTSATLTVRAL----PARFTEGSG 104

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 18/89 (20%)

Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL- 905
            +F ++LK    SEG    L+C++       ++W K    L+ G  + +   +   C L 
Sbjct: 9   ARFTQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQ-DGTRCELQ 65

Query: 906 ---------GIYTCEAHNCMGTTSSSAAL 925
                    G Y+C      G   +SA L
Sbjct: 66  IHDLSVADAGEYSCMC----GQERTSATL 90

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 63.2 bits (154), Expect = 3e-12
 Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 15/112 (13%)

Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGG 607
               F ++++  +A  G +A L+C++        + W  K    +    +Y +  DG   
Sbjct: 7   GPARFTQDLKTKEASEGATATLQCELSKVA---PVEWK-KGPETLRDGGRYSLKQDG-TR 61

Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLK 659
             ++I+ L   D GE+ C+          ++A + V         RF E   
Sbjct: 62  CELQIHDLSVADAGEYSCMCGQER-----TSATLTVRAL----PARFTEGSG 104

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 20/92 (21%)

Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL-- 705
            RF + LK     +G   + +C++       ++W K  E L+ G  Y L        L  
Sbjct: 9   ARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRCELQI 66

Query: 706 --------GSYCCVAKNVMGKAESSTQLTIED 729
                   G Y C+     G+  +S  LT+  
Sbjct: 67  HDLSVADAGEYSCMC----GQERTSATLTVRA 94

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 21/118 (17%), Positives = 32/118 (27%), Gaps = 21/118 (17%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF-GNRFR 193
              F + L       G  A L  E+     ++ +                  +  G R+ 
Sbjct: 8   PARFTQDLKTKEASEGATATLQCELSKVAPVEWKKG-------------PETLRDGGRYS 54

Query: 194 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 251
                 R EL I  +   D G YS     E   ++A   L+V         F      
Sbjct: 55  LKQDGTRCELQIHDLSVADAGEYSCMCGQER--TSA--TLTVR---ALPARFTEGSGP 105

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 21/118 (17%), Positives = 32/118 (27%), Gaps = 21/118 (17%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF-GNRFR 300
              F + L       G  A L  E+     ++ +                  +  G R+ 
Sbjct: 8   PARFTQDLKTKEASEGATATLQCELSKVAPVEWKKG-------------PETLRDGGRYS 54

Query: 301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHD 358
                 R EL I  +   D G YS     E   ++A   L+V         F      
Sbjct: 55  LKQDGTRCELQIHDLSVADAGEYSCMCGQER--TSA--TLTVR---ALPARFTEGSGP 105

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 12/84 (14%)

Query: 446 KAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPK---- 500
               FT++L+     +G T +L+C++       + W K  + ++ G  ++L  +      
Sbjct: 7   GPARFTQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCEL 64

Query: 501 -----DPSSLGTYTCEAVNCMGAA 519
                  +  G Y+C       +A
Sbjct: 65  QIHDLSVADAGEYSCMCGQERTSA 88

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 8/70 (11%)

Query: 76  GDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 134
           G   +  G R+       R EL I  +   D G YS     E   ++A   L+V      
Sbjct: 43  GPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQER--TSA--TLTVR---AL 95

Query: 135 APAFIRRLHD 144
              F      
Sbjct: 96  PARFTEGSGP 105

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 78.1 bits (193), Expect = 1e-17
 Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 12/90 (13%)

Query: 847 KPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL 905
           KPK L   + + +  G   NLE   IG P PT  W              + + +  T  +
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDA-KSSTTSI 60

Query: 906 ----------GIYTCEAHNCMGTTSSSAAL 925
                     G Y  +  N +G   +   +
Sbjct: 61  FFPSAKRADSGNYKLKVKNELGEDEAIFEV 90

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 73.5 bits (181), Expect = 5e-16
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 14/92 (15%)

Query: 651 KPRFVESLKAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL- 705
           KP+ + + + +    G   + E   +G P PT  W   +          +     T+S+ 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIE 728
                    G+Y    KN +G+ E+  ++ ++
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 73.1 bits (180), Expect = 6e-16
 Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 1/91 (1%)

Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
            PK +   +  +          V    +P+P  +W   D     +  + +         +
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLV-DAKSSTTSI 60

Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLK 838
              + + AD   +K    N+ G+      + 
Sbjct: 61  FFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 72.0 bits (177), Expect = 2e-15
 Identities = 18/92 (19%), Positives = 27/92 (29%), Gaps = 2/92 (2%)

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
            P  +     I +K G    L V+   +P      W   D               +   I
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPD-PTATWTVGDSGAALAPELLVDAKSSTTSI 60

Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
              S    DSG +    +N +G      E+ V
Sbjct: 61  FFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 67.3 bits (165), Expect = 6e-14
 Identities = 20/105 (19%), Positives = 30/105 (28%), Gaps = 16/105 (15%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNR 191
            P  +     I +K G    L V+   +P                      D        
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVG-------------DSGAALAPE 48

Query: 192 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
                +   T +     +R D G Y +   NE G   A FE+ V+
Sbjct: 49  LLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 67.3 bits (165), Expect = 6e-14
 Identities = 20/105 (19%), Positives = 30/105 (28%), Gaps = 16/105 (15%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNR 298
            P  +     I +K G    L V+   +P                      D        
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVG-------------DSGAALAPE 48

Query: 299 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
                +   T +     +R D G Y +   NE G   A FE+ V+
Sbjct: 49  LLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 65.0 bits (159), Expect = 5e-13
 Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 12/91 (13%)

Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL 505
            P        I  + G T +LE   +G P P   W   +          + A     +S+
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSST-TSI 60

Query: 506 ----------GTYTCEAVNCMGAAFSTSRVI 526
                     G Y  +  N +G   +   VI
Sbjct: 61  FFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 56.2 bits (136), Expect = 6e-10
 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 76  GDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
           GD             +   T +     +R D G Y +   NE G   A FE+ V+
Sbjct: 39  GDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 53.5 bits (129), Expect = 5e-09
 Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 2/89 (2%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
            P  +     +K K G +  LE   +  P P    W   +     + +  + A      S
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPT-ATWTVGDSGAALAPELLVDAKS-STTS 59

Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSA 638
           I     +  D G +K    +  G  +   
Sbjct: 60  IFFPSAKRADSGNYKLKVKNELGEDEAIF 88

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 11/65 (16%)

Query: 2  GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
          G P P   W   +          + A     +S+          G Y  +  N +G   +
Sbjct: 28 GAPDPTATWTVGDSGAALAPELLVDAKSST-TSIFFPSAKRADSGNYKLKVKNELGEDEA 86

Query: 52 TSRVI 56
             VI
Sbjct: 87 IFEVI 91

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 78.9 bits (195), Expect = 1e-17
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 11/116 (9%)

Query: 327 ASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN 386
           +S  SG ++A   L+V +       F   L +     G  A L  E+     ++  W++ 
Sbjct: 2   SSGSSGRTSA--MLTVRAL---PIKFTEGLRNEEATEGATAVLRCELSKMAPVE--WWKG 54

Query: 387 DRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
              L +   +  + DG    + +  +   D+G + C+     G+   S  L+V   
Sbjct: 55  HETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAM 106

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 72.4 bits (178), Expect = 2e-15
 Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 24/126 (19%)

Query: 717 GKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISP 776
               +S  LT+  +                   KF EGL++ +AT         ++S   
Sbjct: 5   SSGRTSAMLTVRAL-----------------PIKFTEGLRNEEATEGATAVLRCELS--K 45

Query: 777 EPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCF 836
              V W++  + + + D   + ++    C L+I  L   D  E+ C+     G+  TS  
Sbjct: 46  MAPVEWWKGHETLRDGDRHSLRQDG-ARCELQIRGLVAEDAGEYLCMC----GKERTSAM 100

Query: 837 LKLNVP 842
           L +   
Sbjct: 101 LTVRAM 106

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 67.4 bits (165), Expect = 1e-13
 Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 22/111 (19%)

Query: 826 NDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDG 884
           +      TS  L +         KF E L+    +EG    L C++       ++W+K  
Sbjct: 2   SSGSSGRTSAMLTVRALP----IKFTEGLRNEEATEGATAVLRCEL--SKMAPVEWWKGH 55

Query: 885 RELKAGDIHKIISGEDGTCCL----------GIYTCEAHNCMGTTSSSAAL 925
             L+ GD H +   +   C L          G Y C      G   +SA L
Sbjct: 56  ETLRDGDRHSLRQ-DGARCELQIRGLVAEDAGEYLCMC----GKERTSAML 101

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 62.4 bits (152), Expect = 6e-12
 Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 26/117 (22%)

Query: 627 ATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWF 685
            +S S  +  ++A + V         +F E L+     +G      C++         W+
Sbjct: 1   GSSGSSGR--TSAMLTVRALP----IKFTEGLRNEEATEGATAVLRCELSKMAPVE--WW 52

Query: 686 KDNEELKPGDVYQLT---GTSSL----------GSYCCVAKNVMGKAESSTQLTIED 729
           K +E L+ GD + L        L          G Y C+     GK  +S  LT+  
Sbjct: 53  KGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRA 105

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 20/111 (18%)

Query: 426 NAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDN 484
           ++      S  L+V          FT+ L      +G T  L C++  +   +  W+K +
Sbjct: 2   SSGSSGRTSAMLTVRAL----PIKFTEGLRNEEATEGATAVLRCELSKMAPVE--WWKGH 55

Query: 485 KKIKAGDIFALTANPKD---------PSSLGTYTCEAVNCMGAAFSTSRVI 526
           + ++ GD  +L  +                G Y C      G   +++ + 
Sbjct: 56  ETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLT 102

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 57.0 bits (138), Expect = 5e-10
 Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 24/132 (18%)

Query: 113 ASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLN 172
           +S  SG ++A   L+V +       F   L +     G  A L  E+     ++      
Sbjct: 2   SSGSSGRTSA--MLTVRAL---PIKFTEGLRNEEATEGATAVLRCELSKMAPVEWWKG-- 54

Query: 173 NTIPFSFRAQGDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKF 231
                         +  G+R        R EL IR +  +D G Y      E   ++A  
Sbjct: 55  -----------HETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKER--TSA-- 99

Query: 232 ELSVESQVPDAP 243
            L+V +  P  P
Sbjct: 100 MLTVRAM-PSGP 110

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 57.0 bits (138), Expect = 5e-10
 Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 24/132 (18%)

Query: 220 ASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLN 279
           +S  SG ++A   L+V +       F   L +     G  A L  E+     ++      
Sbjct: 2   SSGSSGRTSA--MLTVRAL---PIKFTEGLRNEEATEGATAVLRCELSKMAPVEWWKG-- 54

Query: 280 NTIPFSFRAQGDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKF 338
                         +  G+R        R EL IR +  +D G Y      E   ++A  
Sbjct: 55  -----------HETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKER--TSA-- 99

Query: 339 ELSVESQVPDAP 350
            L+V +  P  P
Sbjct: 100 MLTVRAM-PSGP 110

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 56.6 bits (137), Expect = 7e-10
 Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 9/99 (9%)

Query: 548 GPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGG 607
                F + + N +A  G +A+L C++        + W+     +   D++ +  DG   
Sbjct: 17  ALPIKFTEGLRNEEATEGATAVLRCELSKMA---PVEWWKGHETLRDGDRHSLRQDG-AR 72

Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
             ++I  L A D GE+ C+          ++A + V   
Sbjct: 73  CELQIRGLVAEDAGEYLCMCGKER-----TSAMLTVRAM 106

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 80.8 bits (199), Expect = 1e-17
 Identities = 23/192 (11%), Positives = 52/192 (27%), Gaps = 39/192 (20%)

Query: 760 ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESD----------------NVKILKETLG 803
               +  + T   S     +  W   +Q  +  +                + +      G
Sbjct: 7   GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 66

Query: 804 VCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGA 863
              L I  L++ D   + C   +   +       +L V                L +G +
Sbjct: 67  NFPLIIKNLKIEDSDTYICEVEDQKEEV------QLLVFGLTANSD------THLLQGQS 114

Query: 864 VNLECKVIGVPQPTLKWFKDGRELKAGD----IHKIISGEDGTCCLGIYTCEAHNCMGTT 919
           + L  +      P+++      +   G     + + +  +D     G +TC         
Sbjct: 115 LTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQ-LELQDS----GTWTCTVLQNQKKV 169

Query: 920 SSSAAL--LGFE 929
                +  L F+
Sbjct: 170 EFKIDIVVLAFQ 181

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 80.8 bits (199), Expect = 1e-17
 Identities = 27/194 (13%), Positives = 54/194 (27%), Gaps = 37/194 (19%)

Query: 554 IKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGL-------- 605
           +K+V  V  K G +  L C        +  +W N   +    ++   +  G         
Sbjct: 1   MKKV--VLGKKGDTVELTCTASQKKSIQ-FHWKNSNQIKILGNQGSFLTKGPSKLNDRAD 57

Query: 606 --------GGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVES 657
                   G + + I  L+  D   + C         Q     +      +  +      
Sbjct: 58  SRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQ------ 111

Query: 658 LKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD----VYQLTGTSSLGSYCCVAK 713
                     ++   +     +P++Q      +   G     V QL    S G++ C   
Sbjct: 112 -------GQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDS-GTWTCTVL 163

Query: 714 NVMGKAESSTQLTI 727
               K E    + +
Sbjct: 164 QNQKKVEFKIDIVV 177

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 66.9 bits (163), Expect = 8e-13
 Identities = 22/185 (11%), Positives = 52/185 (28%), Gaps = 30/185 (16%)

Query: 359 IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKL-----------------EENKIYRTQHD 401
           +  K G    L         I+ HW  +++                   +     R+  D
Sbjct: 5   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64

Query: 402 GNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQ 461
              + + + ++ + DS  + C  E+                            +  L + 
Sbjct: 65  QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANS------------DTHLLQG 112

Query: 462 GTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFS 521
            +++L  +     +P +       K   G    L+ +  +    GT+TC  +        
Sbjct: 113 QSLTLTLESPPGSSPSVQCRSPRGKNIQGGK-TLSVSQLELQDSGTWTCTVLQNQKKVEF 171

Query: 522 TSRVI 526
              ++
Sbjct: 172 KIDIV 176

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 65.0 bits (158), Expect = 5e-12
 Identities = 20/182 (10%), Positives = 42/182 (23%), Gaps = 29/182 (15%)

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGSYCCVAKNVMGKAESSTQLTI 727
           V   C      +    W   N+    G+                        + +  L I
Sbjct: 13  VELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLII 72

Query: 728 EDIR-----------NHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISP 776
           ++++               EE +LL+                     +    T++     
Sbjct: 73  KNLKIEDSDTYICEVEDQKEEVQLLVFGLTANS-------DTHLLQGQSLTLTLESPPGS 125

Query: 777 EPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCF 836
            P V       + ++               L +  LE+ D   W C    +  +      
Sbjct: 126 SPSVQCRSPRGKNIQGGKT-----------LSVSQLELQDSGTWTCTVLQNQKKVEFKID 174

Query: 837 LK 838
           + 
Sbjct: 175 IV 176

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 62.3 bits (151), Expect = 4e-11
 Identities = 23/137 (16%), Positives = 40/137 (29%), Gaps = 24/137 (17%)

Query: 305 DGRTELNIRRVRRDDGGRYSVTASNESG-YSTAKFELSVESQVPDAPAFIRRLHDIAVKV 363
            G   L I+ ++ +D   Y     ++        F L+  S             D  +  
Sbjct: 65  QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANS-------------DTHLLQ 111

Query: 364 GTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCL 423
           G    L +E    +   +       K  +                +S + L DSG WTC 
Sbjct: 112 GQSLTLTLESPPGSSPSVQCRSPRGKNIQG-------GKTLS---VSQLELQDSGTWTCT 161

Query: 424 AENAVGRSHCSCELSVL 440
                 +     ++ VL
Sbjct: 162 VLQNQKKVEFKIDIVVL 178

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 24/178 (13%), Positives = 49/178 (27%), Gaps = 34/178 (19%)

Query: 59  GQQSFLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG 118
            Q   L N      +         +  R++   G   L I+ ++ +D   Y     ++  
Sbjct: 33  NQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKE 92

Query: 119 -YSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPF 177
                 F L+  S             D  +  G    L            +    ++   
Sbjct: 93  EVQLLVFGLTANS-------------DTHLLQGQSLTL----------TLESPPGSSPSV 129

Query: 178 SFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
             R+     I G +           L++ ++   D G ++ T          K ++ V
Sbjct: 130 QCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV 177

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 20/146 (13%), Positives = 41/146 (28%), Gaps = 34/146 (23%)

Query: 198 DGRTELNIRRVRRDDGGRYSVTASNESG-YSTAKFELSVESQVPDAPAFIRRLHDIAVKV 256
            G   L I+ ++ +D   Y     ++        F L+  S             D  +  
Sbjct: 65  QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANS-------------DTHLLQ 111

Query: 257 GTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVR 316
           G    L            +    ++     R+     I G +           L++ ++ 
Sbjct: 112 GQSLTL----------TLESPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLE 151

Query: 317 RDDGGRYSVTASNESGYSTAKFELSV 342
             D G ++ T          K ++ V
Sbjct: 152 LQDSGTWTCTVLQNQKKVEFKIDIVV 177

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 48.1 bits (114), Expect = 3e-06
 Identities = 24/157 (15%), Positives = 38/157 (24%), Gaps = 30/157 (19%)

Query: 2   GIPTPQLIWYKDN-KKIKAGDIFALTANPKDPSSL------------------------- 35
              + Q  W   N  KI       LT  P   +                           
Sbjct: 21  QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDS 80

Query: 36  GTYTCEAVNCMGAA-FSTSRVIARGQQSFLDNDDVPFN-RAQGD-HPIFG-NRFRAINRD 91
            TY CE  +           + A      L    +     +     P       R  N  
Sbjct: 81  DTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ 140

Query: 92  GRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
           G   L++ ++   D G ++ T          K ++ V
Sbjct: 141 GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV 177

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 80.4 bits (198), Expect = 1e-17
 Identities = 27/167 (16%), Positives = 57/167 (34%), Gaps = 18/167 (10%)

Query: 357 HDIAVKVGTRARLLV-EIRSPTEIK-IHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSL 414
             +   +G    L +   +   +I  + W R    + E K        +  F  L++  L
Sbjct: 4   GTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDL 63

Query: 415 F-------DSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLE 467
                   DSG +     +  G    +  L + + +    P        I  E    +L 
Sbjct: 64  KIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPM-------IYWECSNATLT 116

Query: 468 CKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVN 514
           C+V+     +L  Y+  + +++     ++    +      + C+AVN
Sbjct: 117 CEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLR--APFKCKAVN 161

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 78.8 bits (194), Expect = 6e-17
 Identities = 25/185 (13%), Positives = 58/185 (31%), Gaps = 25/185 (13%)

Query: 555 KEVENVKAKIGTSAILECQVLVPPWP-RSIYWY----------NKEGVVEASDKYHIMAD 603
           ++   V   +G    L             + W            K      S  + I+A+
Sbjct: 1   RDSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN 60

Query: 604 GLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMT 663
           G     ++I  L   D G +     S++G  +     + + + +   KP        +  
Sbjct: 61  G----DLKIKNLTRDDSGTYNVTVYSTNG-TRILNKALDLRILEMVSKPM-------IYW 108

Query: 664 DDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL--GSYCCVAKNVMGKAES 721
           +    +  C+V+      L+ ++  E L+      ++   +     + C A N + +   
Sbjct: 109 ECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESE 168

Query: 722 STQLT 726
              + 
Sbjct: 169 MEVVN 173

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 76.5 bits (188), Expect = 4e-16
 Identities = 28/175 (16%), Positives = 49/175 (28%), Gaps = 19/175 (10%)

Query: 760 ATVNEEFKFTVQVSISPEPK--VSWFRDDQQVVESDNVKILKETLGVCH------LKIHA 811
             +       +      +    V W R    V E           G         LKI  
Sbjct: 8   GALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKN 67

Query: 812 LEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVI 871
           L   D   +     +  G  I +  L L + +   KP        +  E     L C+V+
Sbjct: 68  LTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPM-------IYWECSNATLTCEVL 120

Query: 872 GVPQPTLKWFKDGRELKAGDIHKI-ISGEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
                 LK ++    L++     +     +       + C+A N +   S    +
Sbjct: 121 EGTDVELKLYQGKEHLRSLRQKTMSYQWTNLR---APFKCKAVNRVSQESEMEVV 172

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 59.2 bits (143), Expect = 3e-10
 Identities = 29/155 (18%), Positives = 51/155 (32%), Gaps = 26/155 (16%)

Query: 295 FGNRFRAINRDGRTE------LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 348
           F  + +   + G  E      L I+ + RDD G Y+VT  + +G       L +      
Sbjct: 42  FKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMV 101

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
           +   I           + A L  E+   T++++  Y+    L   +              
Sbjct: 102 SKPMI-------YWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ-----------KT 143

Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPK 443
           +S         + C A N V +   S    V  P+
Sbjct: 144 MSYQWTNLRAPFKCKAVNRVSQE--SEMEVVNCPE 176

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 19/204 (9%), Positives = 51/204 (25%), Gaps = 55/204 (26%)

Query: 660 AVMTDDGLVSFECKVVGFPTPTLQWFKDNEEL----------KPGDVYQLTGTSSL---- 705
             +     ++     +      ++W + +  +               +++     L    
Sbjct: 8   GALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKN 67

Query: 706 ------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQ 759
                 G+Y     +  G    +  L +  +                   K +   +   
Sbjct: 68  LTRDDSGTYNVTVYSTNGTRILNKALDLRIL---------------EMVSKPMIYWECSN 112

Query: 760 ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAE 819
           AT       T +V    + ++  ++  + +                   +       +A 
Sbjct: 113 AT------LTCEVLEGTDVELKLYQGKEHLRSLRQ------------KTMSYQWTNLRAP 154

Query: 820 WKCIATNDFGQSITSCFLKLNVPK 843
           +KC A N   Q        +N P+
Sbjct: 155 FKCKAVNRVSQESEM--EVVNCPE 176

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 22/161 (13%), Positives = 45/161 (27%), Gaps = 34/161 (21%)

Query: 81  FGNRFRAINRDGRTE------LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 134
           F  + +   + G  E      L I+ + RDD G Y+VT  + +G       L +      
Sbjct: 42  FKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMV 101

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRA 194
           +   I           + A L  E+   T+++ +         S                
Sbjct: 102 SKPMI-------YWECSNATLTCEVLEGTDVELKLYQGKEHLRS---------------- 138

Query: 195 INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
                  +  +     +    +   A N     +    ++ 
Sbjct: 139 -----LRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 22/161 (13%), Positives = 45/161 (27%), Gaps = 34/161 (21%)

Query: 188 FGNRFRAINRDGRTE------LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 241
           F  + +   + G  E      L I+ + RDD G Y+VT  + +G       L +      
Sbjct: 42  FKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMV 101

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRA 301
           +   I           + A L  E+   T+++ +         S                
Sbjct: 102 SKPMI-------YWECSNATLTCEVLEGTDVELKLYQGKEHLRS---------------- 138

Query: 302 INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
                  +  +     +    +   A N     +    ++ 
Sbjct: 139 -----LRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 6/43 (13%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVN 44
                +L  Y+  + +++     ++    +      + C+AVN
Sbjct: 121 EGTDVELKLYQGKEHLRSLRQKTMSYQWTNLR--APFKCKAVN 161

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 77.4 bits (191), Expect = 3e-17
 Identities = 13/96 (13%), Positives = 31/96 (32%), Gaps = 5/96 (5%)

Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH 806
              K +  L      + +E     ++S        W ++   V ESD +K++++   +  
Sbjct: 6   SGLKILTPLTDQTVNLGKEICLKCEIS--ENIPGKWTKNGLPVQESDRLKVVQKG-RIHK 62

Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
           L I      D+ ++                + +   
Sbjct: 63  LVIANALTEDEGDYVFAPDA--YNVTLPAKVHVISG 96

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 4/94 (4%)

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
               +  L D  V +G    L  EI      K  W +N   ++E+   +    G  + + 
Sbjct: 7   GLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIHKLV 64

Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
           +++    D G +    +          ++ V+  
Sbjct: 65  IANALTEDEGDYVFAPDA--YNVTLPAKVHVISG 96

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 16/91 (17%)

Query: 846 KKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC 904
              K L  L    ++ G  + L+C++        KW K+G  ++  D  K++  +     
Sbjct: 6   SGLKILTPLTDQTVNLGKEICLKCEISENIPG--KWTKNGLPVQESDRLKVVQ-KGRIHK 62

Query: 905 L----------GIYTCEAHNCMGTTSSSAAL 925
           L          G Y           +  A +
Sbjct: 63  LVIANALTEDEGDYVFAPDA--YNVTLPAKV 91

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 9/98 (9%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGGY 608
               +  + +    +G    L+C++      +   W  K G+ V+ SD+  ++  G   +
Sbjct: 7   GLKILTPLTDQTVNLGKEICLKCEISENIPGK---WT-KNGLPVQESDRLKVVQKG-RIH 61

Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
            + I      D+G++     + +       A VHV+  
Sbjct: 62  KLVIANALTEDEGDYVFAPDAYNV---TLPAKVHVISG 96

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 9/92 (9%), Positives = 24/92 (26%), Gaps = 18/92 (19%)

Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL-- 705
            + +  L     + G  +  +C++         W K+   ++  D  ++        L  
Sbjct: 8   LKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIHKLVI 65

Query: 706 --------GSYCCVAKNVMGKAESSTQLTIED 729
                   G Y               ++ +  
Sbjct: 66  ANALTEDEGDYVFAPDA--YNVTLPAKVHVIS 95

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 11/92 (11%), Positives = 22/92 (23%), Gaps = 16/92 (17%)

Query: 446 KAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSS 504
                   L       G  + L+C++      +  W K+   ++  D   +         
Sbjct: 6   SGLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQK-GRIHK 62

Query: 505 L----------GTYTCEAVNCMGAAFSTSRVI 526
           L          G Y              ++V 
Sbjct: 63  LVIANALTEDEGDYVFAPDA--YNVTLPAKVH 92

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 16/104 (15%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF-GNRFR 193
               +  L D  V +G    L  EI      K   +               P+   +R +
Sbjct: 7   GLKILTPLTDQTVNLGKEICLKCEISENIPGKWTKN-------------GLPVQESDRLK 53

Query: 194 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 237
            + +    +L I     +D G Y       +    AK  + V S
Sbjct: 54  VVQKGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAK--VHVIS 95

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 16/104 (15%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF-GNRFR 300
               +  L D  V +G    L  EI      K   +               P+   +R +
Sbjct: 7   GLKILTPLTDQTVNLGKEICLKCEISENIPGKWTKN-------------GLPVQESDRLK 53

Query: 301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
            + +    +L I     +D G Y       +    AK  + V S
Sbjct: 54  VVQKGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAK--VHVIS 95

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 77.0 bits (190), Expect = 3e-17
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL 409
            A I+ L D  V  G    L  E+       +HW ++ + + +++ Y    +G    + +
Sbjct: 9   AAIIKPLEDQWVAPGEDVELRCELSRAGT-PVHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67

Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKA 444
              SL D+G +TC  E     S  +  L V    +
Sbjct: 68  RGASLKDAGEYTCEVEA----SKSTASLHVEEKAS 98

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 70.4 bits (173), Expect = 8e-15
 Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLK 808
              I+ L+       E+ +   ++S +  P V W +D + + +S    ++ E   +  L 
Sbjct: 9   AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEG-TMAMLV 66

Query: 809 IHALEVADQAEWKCIATNDFG 829
           I    + D  E+ C       
Sbjct: 67  IRGASLKDAGEYTCEVEASKS 87

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 67.3 bits (165), Expect = 9e-14
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 13/82 (15%)

Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL- 905
              ++ L+   ++ G  V L C++     P + W KD + ++    + ++  E     L 
Sbjct: 9   AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVC-EGTMAMLV 66

Query: 906 ---------GIYTCEAHNCMGT 918
                    G YTCE      T
Sbjct: 67  IRGASLKDAGEYTCEVEASKST 88

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 61.9 bits (151), Expect = 7e-12
 Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 19/92 (20%)

Query: 652 PRFVESLKAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL-- 705
              ++ L+      G  V   C++    TP + W KD + ++    Y +      + L  
Sbjct: 9   AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67

Query: 706 --------GSYCCVAKNVMGKAESSTQLTIED 729
                   G Y C  +     A     L +E+
Sbjct: 68  RGASLKDAGEYTCEVEASKSTAS----LHVEE 95

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGG 607
                IK +E+     G    L C++     P  ++W  K+   +  S KY ++ +G   
Sbjct: 7   GPAAIIKPLEDQWVAPGEDVELRCELSRAGTP--VHWL-KDRKAIRKSQKYDVVCEG-TM 62

Query: 608 YSIEINYLEAVDDGEWKCVATSSSG 632
             + I      D GE+ C   +S  
Sbjct: 63  AMLVIRGASLKDAGEYTCEVEASKS 87

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 21/83 (25%), Positives = 28/83 (33%), Gaps = 13/83 (15%)

Query: 448 PFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL- 505
               K LE      G  V L C++    TP + W KD K I+    + +       + L 
Sbjct: 9   AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCE-GTMAMLV 66

Query: 506 ---------GTYTCEAVNCMGAA 519
                    G YTCE       A
Sbjct: 67  IRGASLKDAGEYTCEVEASKSTA 89

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 21/110 (19%), Positives = 30/110 (27%), Gaps = 20/110 (18%)

Query: 136 PAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKCQFDLNNTIPFSFRAQGDHPIF-GNRFR 193
            A I+ L D  V  G    L  E+  + T +    D                I    ++ 
Sbjct: 9   AAIIKPLEDQWVAPGEDVELRCELSRAGTPVHWLKD-------------RKAIRKSQKYD 55

Query: 194 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 243
            +       L IR     D G Y+               L VE +    P
Sbjct: 56  VVCEGTMAMLVIRGASLKDAGEYTCEVEASKS----TASLHVEEK-ASGP 100

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 21/110 (19%), Positives = 30/110 (27%), Gaps = 20/110 (18%)

Query: 243 PAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKCQFDLNNTIPFSFRAQGDHPIF-GNRFR 300
            A I+ L D  V  G    L  E+  + T +    D                I    ++ 
Sbjct: 9   AAIIKPLEDQWVAPGEDVELRCELSRAGTPVHWLKD-------------RKAIRKSQKYD 55

Query: 301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 350
            +       L IR     D G Y+               L VE +    P
Sbjct: 56  VVCEGTMAMLVIRGASLKDAGEYTCEVEASKS----TASLHVEEK-ASGP 100

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 11/62 (17%), Positives = 16/62 (25%), Gaps = 6/62 (9%)

Query: 76  GDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 134
               I    ++  +       L IR     D G Y+               L VE +   
Sbjct: 44  DRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASKS----TASLHVEEK-AS 98

Query: 135 AP 136
            P
Sbjct: 99  GP 100

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 75.9 bits (187), Expect = 9e-17
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 349 APAFIRRLHDI-AVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
             AF + L     V  G R R +VE+  P ++++ WY+N +++  +  Y  +H G    +
Sbjct: 7   GAAFAKILDPAYQVDKGGRVRFVVELADP-KLEVKWYKNGQEIRPSTKYIFEHKGCQRIL 65

Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKA 444
            +++  + D   +   A +      CS EL V    +
Sbjct: 66  FINNCQMTDDSEYYVTAGDE----KCSTELFVRSGPS 98

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 69.3 bits (170), Expect = 2e-14
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 7/97 (7%)

Query: 748 APKFIEGLKSC-QATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH 806
              F + L    Q       +F V+++  P+ +V W+++ Q++  S       +      
Sbjct: 7   GAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKG-CQRI 64

Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPK 843
           L I+  ++ D +E+   A    G    S  L +    
Sbjct: 65  LFINNCQMTDDSEYYVTA----GDEKCSTELFVRSGP 97

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 65.5 bits (160), Expect = 4e-13
 Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 18/91 (19%)

Query: 847 KPKFLEELKAVLS--EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC 904
              F + L       +GG V    ++   P+  +KW+K+G+E++    +     +     
Sbjct: 7   GAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEH-KGCQRI 64

Query: 905 L----------GIYTCEAHNCMGTTSSSAAL 925
           L            Y   A    G    S  L
Sbjct: 65  LFINNCQMTDDSEYYVTA----GDEKCSTEL 91

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 59.7 bits (145), Expect = 4e-11
 Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 20/94 (21%)

Query: 651 KPRFVESLKAVMT--DDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL 705
              F + L         G V F  ++   P   ++W+K+ +E++P   Y          L
Sbjct: 7   GAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRIL 65

Query: 706 ----------GSYCCVAKNVMGKAESSTQLTIED 729
                       Y   A    G  + ST+L +  
Sbjct: 66  FINNCQMTDDSEYYVTA----GDEKCSTELFVRS 95

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 55.9 bits (135), Expect = 9e-10
 Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 6/85 (7%)

Query: 549 PAPIFIKEVE-NVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLG 606
               F K ++   +   G       ++  P     + WY K G  +  S KY     G  
Sbjct: 6   SGAAFAKILDPAYQVDKGGRVRFVVELADPK-L-EVKWY-KNGQEIRPSTKYIFEHKG-C 61

Query: 607 GYSIEINYLEAVDDGEWKCVATSSS 631
              + IN  +  DD E+   A    
Sbjct: 62  QRILFINNCQMTDDSEYYVTAGDEK 86

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 18/92 (19%)

Query: 447 APFFTKELEAILT--EQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSS 504
              F K L+      + G V    ++   P  ++ WYK+ ++I+    +           
Sbjct: 7   GAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHK-GCQRI 64

Query: 505 L----------GTYTCEAVNCMGAAFSTSRVI 526
           L            Y   A    G    ++ + 
Sbjct: 65  LFINNCQMTDDSEYYVTA----GDEKCSTELF 92

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 20/106 (18%)

Query: 135 APAFIRRLHDI-AVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNR 191
             AF + L     V  G R R +VE+  P  E+K   +                I    +
Sbjct: 7   GAAFAKILDPAYQVDKGGRVRFVVELADPKLEVKWYKN-------------GQEIRPSTK 53

Query: 192 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 237
           +   ++  +  L I   +  D   Y VTA +E        EL V S
Sbjct: 54  YIFEHKGCQRILFINNCQMTDDSEYYVTAGDEK----CSTELFVRS 95

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 20/106 (18%)

Query: 242 APAFIRRLHDI-AVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNR 298
             AF + L     V  G R R +VE+  P  E+K   +                I    +
Sbjct: 7   GAAFAKILDPAYQVDKGGRVRFVVELADPKLEVKWYKN-------------GQEIRPSTK 53

Query: 299 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
           +   ++  +  L I   +  D   Y VTA +E        EL V S
Sbjct: 54  YIFEHKGCQRILFINNCQMTDDSEYYVTAGDEK----CSTELFVRS 95

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 75.4 bits (186), Expect = 1e-16
 Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
           A  F   L ++ V+    A    +   P    + W +   +L  +  ++   +G    + 
Sbjct: 8   ANCFTEELTNLQVEEKGTAVFTCKTEHP-AATVTWRKGLLELRASGKHQPSQEGLTLRLT 66

Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
           +S++   DS  +TC      G++    +L V
Sbjct: 67  ISALEKADSDTYTCDI----GQAQSRAQLLV 93

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 75.4 bits (186), Expect = 1e-16
 Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH 806
            A  F E L + Q        FT +    P   V+W +   ++  S   +  +E      
Sbjct: 7   GANCFTEELTNLQVEEKGTAVFTCKTE-HPAATVTWRKGLLELRASGKHQPSQEG-LTLR 64

Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFL 837
           L I ALE AD   + C      GQ+ +   L
Sbjct: 65  LTISALEKADSDTYTCDI----GQAQSRAQL 91

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 72.0 bits (177), Expect = 2e-15
 Identities = 26/89 (29%), Positives = 32/89 (35%), Gaps = 17/89 (19%)

Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL- 905
             F EEL  + + E G     CK    P  T+ W K   EL+A   H+    E  T  L 
Sbjct: 9   NCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQ-EGLTLRLT 66

Query: 906 ---------GIYTCEAHNCMGTTSSSAAL 925
                      YTC+     G   S A L
Sbjct: 67  ISALEKADSDTYTCDI----GQAQSRAQL 91

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 19/98 (19%)

Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL-- 705
             F E L  +  ++     F CK    P  T+ W K   EL+    +Q +    T  L  
Sbjct: 9   NCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTI 67

Query: 706 --------GSYCCVAKNVMGKAESSTQLTIEDIRNHLS 735
                    +Y C      G+A+S  QL ++  R+  S
Sbjct: 68  SALEKADSDTYTCDI----GQAQSRAQLLVQGRRSGPS 101

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 59.3 bits (144), Expect = 7e-11
 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGGY 608
           A  F +E+ N++ +   +A+  C+   P    ++ W  K  + + AS K+    +G    
Sbjct: 8   ANCFTEELTNLQVEEKGTAVFTCKTEHPA-A-TVTWR-KGLLELRASGKHQPSQEG-LTL 63

Query: 609 SIEINYLEAVDDGEWKCVATSSS 631
            + I+ LE  D   + C    + 
Sbjct: 64  RLTISALEKADSDTYTCDIGQAQ 86

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 17/98 (17%)

Query: 446 KAPFFTKELEAI-LTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSS 504
            A  FT+EL  + + E+GT    CK    P   + W K   +++A      +        
Sbjct: 7   GANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQE-GLTLR 64

Query: 505 L----------GTYTCEAVNCMGAAFSTSRVIARGQQS 532
           L           TYTC+     G A S ++++ +G++S
Sbjct: 65  LTISALEKADSDTYTCDI----GQAQSRAQLLVQGRRS 98

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 14/111 (12%), Positives = 32/111 (28%), Gaps = 20/111 (18%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNRF 192
           A  F   L ++ V+    A    +   P   +  +                  +    + 
Sbjct: 8   ANCFTEELTNLQVEEKGTAVFTCKTEHPAATVTWRKG-------------LLELRASGKH 54

Query: 193 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 243
           +         L I  + + D   Y+       G + ++ +L V+ +    P
Sbjct: 55  QPSQEGLTLRLTISALEKADSDTYTCDI----GQAQSRAQLLVQGR-RSGP 100

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 14/111 (12%), Positives = 32/111 (28%), Gaps = 20/111 (18%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNRF 299
           A  F   L ++ V+    A    +   P   +  +                  +    + 
Sbjct: 8   ANCFTEELTNLQVEEKGTAVFTCKTEHPAATVTWRKG-------------LLELRASGKH 54

Query: 300 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 350
           +         L I  + + D   Y+       G + ++ +L V+ +    P
Sbjct: 55  QPSQEGLTLRLTISALEKADSDTYTCDI----GQAQSRAQLLVQGR-RSGP 100

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 6/62 (9%)

Query: 76  GDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 134
           G   +    + +         L I  + + D   Y+       G + ++ +L V+ +   
Sbjct: 44  GLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCDI----GQAQSRAQLLVQGR-RS 98

Query: 135 AP 136
            P
Sbjct: 99  GP 100

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 78.1 bits (192), Expect = 1e-16
 Identities = 34/194 (17%), Positives = 52/194 (26%), Gaps = 40/194 (20%)

Query: 557 VENVKAKIGTSAILECQVL-VPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYL 615
           V      +G+  +L C +           W  K GVV       +  D L G   E    
Sbjct: 5   VFTTVEDLGSKILLTCSLNDSATEVTGHRWL-KGGVV-------LKEDALPGQKTEFKVD 56

Query: 616 EAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGL-VSFECKV 674
                GE+ CV            A + +  P     PR      +   ++G      CK 
Sbjct: 57  SDDQWGEYSCVFLPEPMGT----ANIQLHGP-----PRVKAVKSSEHINEGETAMLVCKS 107

Query: 675 VGFP-TPTLQWFKDNEELKPGDVYQLTG---------TSSL-----------GSYCCVAK 713
              P      W+K  +      +               S L           G Y C   
Sbjct: 108 ESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGT 167

Query: 714 NVMGKAESSTQLTI 727
           +  G  ++   L +
Sbjct: 168 SSKGSDQAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 77.4 bits (190), Expect = 2e-16
 Identities = 25/185 (13%), Positives = 53/185 (28%), Gaps = 35/185 (18%)

Query: 361 VKVGTRARL--LVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSG 418
             +G++  L   +   +       W +    L+E+ +   +        +    S    G
Sbjct: 10  EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQK-------TEFKVDSDDQWG 62

Query: 419 RWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIP-TP 476
            ++C+       +     + +  P     P       +    +G T  L CK   +P   
Sbjct: 63  EYSCVFLPEPMGTA---NIQLHGP-----PRVKAVKSSEHINEGETAMLVCKSESVPPVT 114

Query: 477 QLIWYKDNKKIKAGDIFALT-----ANPKDPSSL-----------GTYTCEAVNCMGAAF 520
              WYK         +         ++ +  S L           G Y C   +  G+  
Sbjct: 115 DWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQ 174

Query: 521 STSRV 525
           +   +
Sbjct: 175 AIITL 179

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 76.2 bits (187), Expect = 6e-16
 Identities = 26/186 (13%), Positives = 51/186 (27%), Gaps = 36/186 (19%)

Query: 760 ATVNEEFKFTVQVSISPEPKVS--WFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQ 817
             +  +   T  ++ S        W +    + E          L     +         
Sbjct: 10  EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKED--------ALPGQKTEFKVDSDDQW 61

Query: 818 AEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVPQP 876
            E+ C+   +   +       + +   +  P+      +  ++EG    L CK   VP  
Sbjct: 62  GEYSCVFLPEPMGTAN-----IQL---HGPPRVKAVKSSEHINEGETAMLVCKSESVPPV 113

Query: 877 T-LKWFKDG-----RELKAGDIHKIISGEDGTCCL-----------GIYTCEAHNCMGTT 919
           T   W+K         +   +    +S   G   L           G Y C   +  G+ 
Sbjct: 114 TDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSD 173

Query: 920 SSSAAL 925
            +   L
Sbjct: 174 QAIITL 179

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 75.1 bits (184), Expect = 2e-15
 Identities = 30/199 (15%), Positives = 55/199 (27%), Gaps = 36/199 (18%)

Query: 456 AILTEQGTVSLECKVMGIPTP--QLIWYKDNKKIKAGDIF--ALTANPKDPSSLGTYTCE 511
            +      + L C +    T      W K    +K   +               G Y+C 
Sbjct: 8   TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCV 67

Query: 512 AVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILE 571
            +        T+ +                         P       +     G +A+L 
Sbjct: 68  FLP---EPMGTANIQLH--------------------GPPRVKAVKSSEHINEGETAMLV 104

Query: 572 CQVLVPPWPRSIYWYNKEGVVE------ASDKYHIMADGLGGYSIEINYLEAVDD-GEWK 624
           C+    P      WY      +      +  ++ + +   G   + I  L    D G+++
Sbjct: 105 CKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ-GRSELHIENLNMEADPGQYR 163

Query: 625 CVATSSSGVKQFSAAYVHV 643
           C  TSS G  Q +   + V
Sbjct: 164 CNGTSSKGSDQ-AIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 72.8 bits (178), Expect = 9e-15
 Identities = 20/145 (13%), Positives = 42/145 (28%), Gaps = 15/145 (10%)

Query: 303 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVK 362
           +     +   +    D  G YS     E   +          Q+   P          + 
Sbjct: 44  DALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTA-------NIQLHGPPRVKAVKSSEHIN 96

Query: 363 VGTRARLLVEIRS-PTEIKIHWYRNDRKLEE------NKIYRTQHDGNFYFIDLSSVSL- 414
            G  A L+ +  S P      WY+     ++         +          + + ++++ 
Sbjct: 97  EGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNME 156

Query: 415 FDSGRWTCLAENAVGRSHCSCELSV 439
            D G++ C   ++ G       L V
Sbjct: 157 ADPGQYRCNGTSSKGSDQAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 71.2 bits (174), Expect = 3e-14
 Identities = 27/154 (17%), Positives = 50/154 (32%), Gaps = 17/154 (11%)

Query: 89  NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVK 148
           +     +   +    D  G YS     E   +          Q+   P          + 
Sbjct: 44  DALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTA-------NIQLHGPPRVKAVKSSEHIN 96

Query: 149 VGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNI 205
            G  A L+ +  S    T+    + + ++   +     +     +RF   +  GR+EL+I
Sbjct: 97  EGETAMLVCKSESVPPVTDWA-WYKITDSEDKALMNGSE-----SRFFVSSSQGRSELHI 150

Query: 206 RRVRR-DDGGRYSVTASNESGYSTAKFELSVESQ 238
             +    D G+Y    ++  G   A   L V S 
Sbjct: 151 ENLNMEADPGQYRCNGTSSKGSDQAIITLRVRSH 184

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 71.2 bits (174), Expect = 3e-14
 Identities = 27/154 (17%), Positives = 50/154 (32%), Gaps = 17/154 (11%)

Query: 196 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVK 255
           +     +   +    D  G YS     E   +          Q+   P          + 
Sbjct: 44  DALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTA-------NIQLHGPPRVKAVKSSEHIN 96

Query: 256 VGTRARLLVEIRS---PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNI 312
            G  A L+ +  S    T+    + + ++   +     +     +RF   +  GR+EL+I
Sbjct: 97  EGETAMLVCKSESVPPVTDWA-WYKITDSEDKALMNGSE-----SRFFVSSSQGRSELHI 150

Query: 313 RRVRR-DDGGRYSVTASNESGYSTAKFELSVESQ 345
             +    D G+Y    ++  G   A   L V S 
Sbjct: 151 ENLNMEADPGQYRCNGTSSKGSDQAIITLRVRSH 184

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 67.4 bits (164), Expect = 6e-13
 Identities = 31/186 (16%), Positives = 52/186 (27%), Gaps = 36/186 (19%)

Query: 668 VSFECKVVGFPTPTLQ--WFKDNEELK----PGDVYQLTGTSS--LGSYCCVAKNVMGKA 719
           +   C +    T      W K    LK    PG   +    S    G Y CV        
Sbjct: 16  ILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLP----- 70

Query: 720 ESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQV-SISPEP 778
           E      I+                 +  P+      S      E      +  S+ P  
Sbjct: 71  EPMGTANIQ----------------LHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVT 114

Query: 779 KVSWFRDDQQV-----VESDNVKILKETLGVCHLKIHALEVA-DQAEWKCIATNDFGQSI 832
             +W++            S++   +  + G   L I  L +  D  +++C  T+  G   
Sbjct: 115 DWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQ 174

Query: 833 TSCFLK 838
               L+
Sbjct: 175 AIITLR 180

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 60.4 bits (146), Expect = 2e-10
 Identities = 27/161 (16%), Positives = 42/161 (26%), Gaps = 37/161 (22%)

Query: 4   PTPQLIWYKDNKKIKAGDIF--ALTANPKDPSSLGTYTCEAVNCMGAAFS---------- 51
                 W K    +K   +               G Y+C  +       +          
Sbjct: 28  EVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVK 87

Query: 52  ---TSRVIARGQQSFL-----------------DNDDVPFNRAQGDHPIFGNRFRAINRD 91
              +S  I  G+ + L                   D        G       RF   +  
Sbjct: 88  AVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSES----RFFVSSSQ 143

Query: 92  GRTELNIRRVRR-DDGGRYSVTASNESGYSTAKFELSVESQ 131
           GR+EL+I  +    D G+Y    ++  G   A   L V S 
Sbjct: 144 GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRSH 184

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 54.3 bits (130), Expect = 2e-08
 Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 14/100 (14%)

Query: 856 AVLSEGGAVNLECKVIGVPQPTL--KWFKDGRELKAGDIH------KIISGEDGTCCLGI 907
            V   G  + L C +          +W K G  LK   +       K+ S +      G 
Sbjct: 8   TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQW----GE 63

Query: 908 YTCEAHNCMGTTSSS--AALLGFEDKSQIEKAEEGKKALI 945
           Y+C        T++         +     E   EG+ A++
Sbjct: 64  YSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAML 103

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 74.7 bits (184), Expect = 2e-16
 Identities = 30/96 (31%), Positives = 36/96 (37%), Gaps = 14/96 (14%)

Query: 841 VPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGE 899
                  P  L+      L+  G   L+CK  G P P + W K+G      D    I  E
Sbjct: 2   SSGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ-E 60

Query: 900 DGTCCL----------GIYTCEAHNCMGTTSSSAAL 925
            GT  L          G YTC A +  G TS SA L
Sbjct: 61  QGT--LQIKNLRISDTGTYTCVATSSSGETSWSAVL 94

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 69.0 bits (169), Expect = 2e-14
 Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 12/93 (12%)

Query: 649 YRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDV-YQLTGTSSL- 705
              P  ++               +CK  G P P + W K+       D    +    +L 
Sbjct: 6   SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQ 65

Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIED 729
                    G+Y CVA +  G+   S  L + +
Sbjct: 66  IKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 64.7 bits (158), Expect = 6e-13
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 8/100 (8%)

Query: 344 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR---SPTEIKIHWYRNDRKLEENKIYRTQH 400
           S     P  ++   +  + V   A L  +      P    I W +            T  
Sbjct: 3   SGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPV---ISWLKEGFTFPGRDPRATIQ 59

Query: 401 DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
           +     I   ++ + D+G +TC+A ++ G +  S  L V 
Sbjct: 60  EQGTLQI--KNLRISDTGTYTCVATSSSGETSWSAVLDVT 97

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 64.0 bits (156), Expect = 1e-12
 Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 9/102 (8%)

Query: 545 MPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG--VVEASDKYHIMA 602
                 PI ++   N    +  +A+L+C+    P P  I W  KEG        +  I  
Sbjct: 3   SGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLP-VISWL-KEGFTFPGRDPRATIQE 60

Query: 603 DGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL 644
            G    +++I  L   D G + CVATSSSG   +S A + V 
Sbjct: 61  QG----TLQIKNLRISDTGTYTCVATSSSGETSWS-AVLDVT 97

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 60.1 bits (146), Expect = 3e-11
 Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 18/103 (17%)

Query: 441 VPKAYKAPFFTKELE-AILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD-IFALTAN 498
              +   P   +      L   GT  L+CK  G P P + W K+       D    +   
Sbjct: 2   SSGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQ 61

Query: 499 PKDPSSL----------GTYTCEAVNCMGAAFSTSR--VIARG 529
                +L          GTYTC A +  G    ++   V   G
Sbjct: 62  ----GTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTESG 100

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 59.3 bits (144), Expect = 5e-11
 Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 746 NKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVC 805
           +  P  ++G  +    V+       + +  P P +SW ++       D    ++E  G  
Sbjct: 6   SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQ-GT- 63

Query: 806 HLKIHALEVADQAEWKCIATNDFGQSITSCFL 837
            L+I  L ++D   + C+AT+  G++  S  L
Sbjct: 64  -LQIKNLRISDTGTYTCVATSSSGETSWSAVL 94

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 34/118 (28%)

Query: 130 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD----- 184
           S     P  ++   +  + V   A L          KC            +A GD     
Sbjct: 3   SGSSGPPIILQGPANQTLAVDGTALL----------KC------------KATGDPLPVI 40

Query: 185 ------HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
                     G   RA  ++  T L I+ +R  D G Y+  A++ SG ++    L V 
Sbjct: 41  SWLKEGFTFPGRDPRATIQEQGT-LQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 34/118 (28%)

Query: 237 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD----- 291
           S     P  ++   +  + V   A L          KC            +A GD     
Sbjct: 3   SGSSGPPIILQGPANQTLAVDGTALL----------KC------------KATGDPLPVI 40

Query: 292 ------HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
                     G   RA  ++  T L I+ +R  D G Y+  A++ SG ++    L V 
Sbjct: 41  SWLKEGFTFPGRDPRATIQEQGT-LQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 77  DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
                G   RA  ++  T L I+ +R  D G Y+  A++ SG ++    L V 
Sbjct: 46  GFTFPGRDPRATIQEQGT-LQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 17/71 (23%)

Query: 2   GIPTPQLIWYKDNKKIKAGD-IFALTANPKDPSSL----------GTYTCEAVNCMGAAF 50
           G P P + W K+       D    +        +L          GTYTC A +  G   
Sbjct: 34  GDPLPVISWLKEGFTFPGRDPRATIQEQ----GTLQIKNLRISDTGTYTCVATSSSGETS 89

Query: 51  STSR--VIARG 59
            ++   V   G
Sbjct: 90  WSAVLDVTESG 100

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 79.2 bits (194), Expect = 2e-16
 Identities = 29/173 (16%), Positives = 42/173 (24%), Gaps = 27/173 (15%)

Query: 295 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNES-----GYSTAKFELSVESQVPDA 349
           F  R    N    T L +  V   DGGRY    +  S     G       L V    P  
Sbjct: 78  FLGRASVANLAAPT-LRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSN 136

Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID- 408
              +     + V  G    +           + WY      E  +    Q   N      
Sbjct: 137 NVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGI 196

Query: 409 --------------------LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV 441
                               + +  + D+GR  C      G        ++L 
Sbjct: 197 TWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILK 249

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 76.9 bits (188), Expect = 1e-15
 Identities = 36/250 (14%), Positives = 55/250 (22%), Gaps = 49/250 (19%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQ 61
               P + W K     ++  +F    N +                               
Sbjct: 31  DTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG-------------------------- 64

Query: 62  SFLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNES---- 117
                  V  +  +     F  R    N    T L +  V   DGGRY    +  S    
Sbjct: 65  ------FVESDSYKESFGDFLGRASVANLAAPT-LRLTHVHPQDGGRYWCQVAQWSIRTE 117

Query: 118 -GYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEI-----------RSPTEI 165
            G       L V    P     +     + V  G    +                 PT  
Sbjct: 118 FGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFF 177

Query: 166 KCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESG 225
           +           +    G            +  G   L IR  +  D GR     +   G
Sbjct: 178 ENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQG 237

Query: 226 YSTAKFELSV 235
              A    ++
Sbjct: 238 ELDADRSSTI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 75.3 bits (184), Expect = 4e-15
 Identities = 30/171 (17%), Positives = 42/171 (24%), Gaps = 17/171 (9%)

Query: 188 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNES-----GYSTAKFELSVESQVPDA 242
           F  R    N    T L +  V   DGGRY    +  S     G       L V    P  
Sbjct: 78  FLGRASVANLAAPT-LRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSN 136

Query: 243 PAFIRRLHDIAVKVGTRARLLVEI-----------RSPTEIKCQFDLNNTIPFSFRAQGD 291
              +     + V  G    +                 PT  +           +    G 
Sbjct: 137 NVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGI 196

Query: 292 HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
                      +  G   L IR  +  D GR     +   G   A    ++
Sbjct: 197 TWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 70.3 bits (171), Expect = 2e-13
 Identities = 29/241 (12%), Positives = 60/241 (24%), Gaps = 68/241 (28%)

Query: 558 ENVKAKIGTSAILECQVLVPPW--PRSIYWY--------------------------NKE 589
             V+   G +  L C   +     P  I W                             +
Sbjct: 10  TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESD 69

Query: 590 GVVEASDKYHIMA--DGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQF---SAAYVHVL 644
              E+   +   A    L   ++ + ++   D G + C     S   +F   + + V  +
Sbjct: 70  SYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKV 129

Query: 645 MPKNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDV------- 696
                     V + + V  D+G  ++  C         + W+      +  +        
Sbjct: 130 TGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLA 189

Query: 697 -----------------YQLTGTSSL----------GSYCCVAKNVMGKAESSTQLTIED 729
                               +G  +L          G   C      G+ ++    TI  
Sbjct: 190 NKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILK 249

Query: 730 I 730
           +
Sbjct: 250 V 250

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 67.2 bits (163), Expect = 2e-12
 Identities = 22/215 (10%), Positives = 44/215 (20%), Gaps = 65/215 (30%)

Query: 775 SPEPKVSWFRDDQQVVESDNVKILK----------------------------ETLGVCH 806
           +  P +SW +       +   K                                 L    
Sbjct: 32  TQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPT 91

Query: 807 LKIHALEVADQAEWKCIATN-----DFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSE 860
           L++  +   D   + C         +FG    S  LK+           +   + V + E
Sbjct: 92  LRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKV-TGHTPSNNVHVSTAEVVQVDE 150

Query: 861 GGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL--------------- 905
           G  + + C         + W+      +  +        +                    
Sbjct: 151 GNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFS 210

Query: 906 ---------------GIYTCEAHNCMGTTSSSAAL 925
                          G   CE     G   +  + 
Sbjct: 211 GARNLVIRAAKITDAGRVWCELATGQGELDADRSS 245

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 63.0 bits (152), Expect = 6e-11
 Identities = 29/238 (12%), Positives = 50/238 (21%), Gaps = 69/238 (28%)

Query: 357 HDIAVKVGTRARLLVEIRSPTEI---KIHWYRNDRKLEENKI----YRTQHDGNFYFID- 408
            ++ V  G    L    +   +     I W +        K+    Y  Q +G  +    
Sbjct: 10  TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESD 69

Query: 409 ------------------------LSSVSLFDSGRWTCLAEN-----AVGRSHCSCELSV 439
                                   L+ V   D GR+ C           G    S  L V
Sbjct: 70  SYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKV 129

Query: 440 LVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTAN 498
                          E +  ++G  +++ C         + WY      +  +       
Sbjct: 130 TGHTP-SNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPL 188

Query: 499 PKDPS--------------------SL----------GTYTCEAVNCMGAAFSTSRVI 526
                                    +L          G   CE     G   +     
Sbjct: 189 ANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSST 246

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 61.9 bits (149), Expect = 2e-10
 Identities = 33/244 (13%), Positives = 57/244 (23%), Gaps = 74/244 (30%)

Query: 462 GTVSLECKVM---GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL------------- 505
           GTV L C          P + W K     ++  +F    N +                  
Sbjct: 18  GTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGD 77

Query: 506 -------------------------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVP 540
                                    G Y C+               +   +  LD   V 
Sbjct: 78  FLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQ-----------WSIRTEFGLDAKSVV 126

Query: 541 FNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-------------- 586
                      + +   E V+   G    + C         ++ WY              
Sbjct: 127 LKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCA-NANVTWYTGPTFFENYETGTY 185

Query: 587 ------NKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAY 640
                 N+ G+   S +    A   G  ++ I   +  D G   C   +  G +  +   
Sbjct: 186 QPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQG-ELDADRS 244

Query: 641 VHVL 644
             +L
Sbjct: 245 STIL 248

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 25/240 (10%), Positives = 42/240 (17%), Gaps = 84/240 (35%)

Query: 668 VSFECKVV---GFPTPTLQWFKDNEELKPGDVYQLT------------------------ 700
           V   C          P + W K     +   V++                          
Sbjct: 20  VELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFL 79

Query: 701 --------GTSSL----------GSYCCVAKN-----VMGKAESSTQLTIEDIRNHLSEE 737
                      +L          G Y C           G    S  L +          
Sbjct: 80  GRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTG-------- 131

Query: 738 DKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQ---------- 787
                         +   +  Q     +   T   +      V+W+              
Sbjct: 132 ------HTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTY 185

Query: 788 ----------QVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFL 837
                         S  +       G  +L I A ++ D     C      G+       
Sbjct: 186 QPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSS 245

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 75.2 bits (185), Expect = 3e-16
 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 20/102 (19%)

Query: 837 LKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKII 896
           L +  P     P+ +   +  L       +E  V G P PTL W  +G+ L+   I  + 
Sbjct: 3   LTVYYP-----PRVVSLEEPELRLEHC--IEFVVRGNPPPTLHWLHNGQPLRESKIIHVE 55

Query: 897 SGEDGT---CCL----------GIYTCEAHNCMGTTSSSAAL 925
             ++G     CL          G YT  A N +GT + +   
Sbjct: 56  YYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTING 97

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 71.0 bits (174), Expect = 6e-15
 Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 24/106 (22%)

Query: 641 VHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT 700
           + V  P     PR V   +  +  +     E  V G P PTL W  + + L+   +  + 
Sbjct: 3   LTVYYP-----PRVVSLEEPELRLEH--CIEFVVRGNPPPTLHWLHNGQPLRESKIIHVE 55

Query: 701 -------GTSSL----------GSYCCVAKNVMGKAESSTQLTIED 729
                      L          G+Y  +AKN +G A  +       
Sbjct: 56  YYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLK 101

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 69.8 bits (171), Expect = 2e-14
 Identities = 27/130 (20%), Positives = 41/130 (31%), Gaps = 27/130 (20%)

Query: 436 ELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFAL 495
            L+V  P     P      E  L  +    +E  V G P P L W  + + ++   I  +
Sbjct: 2   ALTVYYP-----PRVVSLEEPELRLEHC--IEFVVRGNPPPTLHWLHNGQPLRESKIIHV 54

Query: 496 TANPKD-------------PSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFN 542
               +                + G YT  A N +G A  T          FL     P +
Sbjct: 55  EYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH------FLKEPF-PVD 107

Query: 543 SLMPPGPAPI 552
            + P  P  +
Sbjct: 108 EVSPTPPITV 117

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 64.1 bits (156), Expect = 2e-12
 Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 6/103 (5%)

Query: 743 LTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETL 802
           LT    P+ +   +     +  E      V  +P P + W  + Q + ES  + +     
Sbjct: 3   LTVYYPPRVVSLEE---PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQE 59

Query: 803 GVCH---LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
           G      L  +     +   +  IA N  G +  +        
Sbjct: 60  GEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 102

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 61.0 bits (148), Expect = 2e-11
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 380 KIHWYRNDRKLEENKIYRTQ--HDGNFYFIDL--SSVSLFDSGRWTCLAENAVGRSHCSC 435
            +HW  N + L E+KI   +   +G      L  +  + +++G +T +A+N +G ++ + 
Sbjct: 36  TLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTI 95

Query: 436 ELSVLVP 442
               L  
Sbjct: 96  NGHFLKE 102

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 13/68 (19%)

Query: 2  GIPTPQLIWYKDNKKIKAGDIFALTANPKD-------------PSSLGTYTCEAVNCMGA 48
          G P P L W  + + ++   I  +    +                + G YT  A N +G 
Sbjct: 31 GNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGT 90

Query: 49 AFSTSRVI 56
          A  T    
Sbjct: 91 ANQTINGH 98

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 8/98 (8%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGY- 608
            P  +   E     +     +E  V   P P +++W +    +  S   H+     G   
Sbjct: 8   PPRVVSLEEPE---LRLEHCIEFVVRGNPPP-TLHWLHNGQPLRESKIIHVEYYQEGEIS 63

Query: 609 --SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL 644
              +  N     ++G +  +A +  G    +    H L
Sbjct: 64  EGCLLFNKPTHYNNGNYTLIAKNPLGTANQT-INGHFL 100

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 8/58 (13%), Positives = 15/58 (25%), Gaps = 7/58 (12%)

Query: 89  NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV-------ESQVPDAPAFI 139
                  L   +    + G Y++ A N  G +               +   P  P  +
Sbjct: 60  GEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTPPITV 117

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 8/58 (13%), Positives = 15/58 (25%), Gaps = 7/58 (12%)

Query: 196 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV-------ESQVPDAPAFI 246
                  L   +    + G Y++ A N  G +               +   P  P  +
Sbjct: 60  GEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTPPITV 117

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 8/58 (13%), Positives = 15/58 (25%), Gaps = 7/58 (12%)

Query: 303 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV-------ESQVPDAPAFI 353
                  L   +    + G Y++ A N  G +               +   P  P  +
Sbjct: 60  GEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTPPITV 117

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 74.8 bits (184), Expect = 3e-16
 Identities = 22/119 (18%), Positives = 42/119 (35%), Gaps = 12/119 (10%)

Query: 341 SVESQVPDAPAFI---RRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYR 397
           S  S   D  ++I        +A     R  L  E+  P   ++ W ++  ++ E+    
Sbjct: 2   SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCELCRPW-AEVRWTKDGEEVVESPALL 60

Query: 398 TQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEA 456
            Q +     + L +V L DSG + C  ++       S  ++V  P             +
Sbjct: 61  LQKEDTVRRLVLPAVQLEDSGEYLCEIDDE----SASFTVTVTEP----PVRIIYSGPS 111

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 70.6 bits (173), Expect = 8e-15
 Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 10/110 (9%)

Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH 806
               +  G     A   E    T ++   P  +V W +D ++VVES  + + KE   V  
Sbjct: 12  SWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKED-TVRR 69

Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKA 856
           L + A+++ D  E+ C   ++      S    + V       + +    +
Sbjct: 70  LVLPAVQLEDSGEYLCEIDDE------SASFTVTV--TEPPVRIIYSGPS 111

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 69.8 bits (171), Expect = 2e-14
 Identities = 22/95 (23%), Positives = 31/95 (32%), Gaps = 18/95 (18%)

Query: 841 VPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGED 900
           V      P     + AV      V L C++   P   ++W KDG E+       +   ED
Sbjct: 10  VSSWIVYPSGKVYVAAV--RLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQK-ED 65

Query: 901 GTCCL----------GIYTCEAHNCMGTTSSSAAL 925
               L          G Y CE        S+S  +
Sbjct: 66  TVRRLVLPAVQLEDSGEYLCEI----DDESASFTV 96

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 60.2 bits (146), Expect = 5e-11
 Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 14/119 (11%)

Query: 543 SLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIM 601
           S        ++      V A      +L C++  P     + W  K+G  V  S    + 
Sbjct: 6   SGTDVSSWIVYPSGKVYVAAVRLERVVLTCELCRPW-A-EVRWT-KDGEEVVESPALLLQ 62

Query: 602 ADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKA 660
            +      + +  ++  D GE+ C     S     ++  V V  P      R + S  +
Sbjct: 63  KED-TVRRLVLPAVQLEDSGEYLCEIDDES-----ASFTVTVTEP----PVRIIYSGPS 111

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 18/97 (18%), Positives = 29/97 (29%), Gaps = 20/97 (20%)

Query: 646 PKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GT 702
                 P     + AV  +   V   C++   P   ++W KD EE+       L      
Sbjct: 11  SSWIVYPSGKVYVAAVRLER--VVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTV 67

Query: 703 SSL----------GSYCCVAKNVMGKAESSTQLTIED 729
             L          G Y C          +S  +T+ +
Sbjct: 68  RRLVLPAVQLEDSGEYLCEI----DDESASFTVTVTE 100

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 15/97 (15%), Positives = 27/97 (27%), Gaps = 15/97 (15%)

Query: 434 SCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDI 492
           S   S           +      +   +   V L C++   P  ++ W KD +++     
Sbjct: 2   SSGSSGTDVS--SWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPA 58

Query: 493 FALTANPKDPSSL----------GTYTCEAVNCMGAA 519
             L         L          G Y CE  +   + 
Sbjct: 59  LLLQKE-DTVRRLVLPAVQLEDSGEYLCEIDDESASF 94

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 22/115 (19%), Positives = 35/115 (30%), Gaps = 22/115 (19%)

Query: 127 SVESQVPDAPAFI---RRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQ 182
           S  S   D  ++I        +A     R  L  E+  P  E++   D            
Sbjct: 2   SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCELCRPWAEVRWTKD------------ 49

Query: 183 GDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
               +           D    L +  V+ +D G Y     +ES    A F ++V 
Sbjct: 50  -GEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDES----ASFTVTVT 99

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 22/115 (19%), Positives = 35/115 (30%), Gaps = 22/115 (19%)

Query: 234 SVESQVPDAPAFI---RRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQ 289
           S  S   D  ++I        +A     R  L  E+  P  E++   D            
Sbjct: 2   SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCELCRPWAEVRWTKD------------ 49

Query: 290 GDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
               +           D    L +  V+ +D G Y     +ES    A F ++V 
Sbjct: 50  -GEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDES----ASFTVTVT 99

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 77.2 bits (189), Expect = 4e-16
 Identities = 34/193 (17%), Positives = 53/193 (27%), Gaps = 20/193 (10%)

Query: 460 EQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD----IFALTANPKDPSSLGTYTCEAVNC 515
           E G+V L C         + W+KD K I         + L +N KDP   G Y C+    
Sbjct: 17  EDGSVLLTC---DAEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPR--GMYQCKGSQN 71

Query: 516 MGAAFSTSRVIARGQQSFLDN------DDVPFNSLMPPGPAPIFIKEVENVKAKI-GTSA 568
                     +     +  D                  G   +        K  I GT+ 
Sbjct: 72  KSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTV 131

Query: 569 ILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVAT 628
           IL C          I W + +  +   +    +      +     + E    G + C   
Sbjct: 132 ILTCPQYPGS---EILWQHNDKNIGGDEDDKNIGSD-EDHLSLKEFSELEQSGYYVCYPR 187

Query: 629 SSSGVKQFSAAYV 641
            S         Y+
Sbjct: 188 GSKPEDANFYLYL 200

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 74.5 bits (182), Expect = 3e-15
 Identities = 21/184 (11%), Positives = 49/184 (26%), Gaps = 42/184 (22%)

Query: 775 SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQ---- 830
           +    ++WF+D + +      K            + +     +  ++C  + +  +    
Sbjct: 27  AEAKNITWFKDGKMIGFLTEDKK--------KWNLGSNAKDPRGMYQCKGSQNKSKPLQV 78

Query: 831 ---------SITSCFLKLNVPK----------HYKKPKFLEELKAVLSEGGAVNLECKVI 871
                    +      K +  K          + +     +    V   G  V L C   
Sbjct: 79  YYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQ- 137

Query: 872 GVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL---------GIYTCEAHNCMGTTSSS 922
             P   + W  + + +   +  K I  ++    L         G Y C         ++ 
Sbjct: 138 -YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANF 196

Query: 923 AALL 926
              L
Sbjct: 197 YLYL 200

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 71.8 bits (175), Expect = 3e-14
 Identities = 28/193 (14%), Positives = 54/193 (27%), Gaps = 24/193 (12%)

Query: 665 DGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT------GTSSLGSYCCVAKNVMGK 718
           DG V   C         + WFKD + +      +             G Y C       K
Sbjct: 18  DGSVLLTC---DAEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSK 74

Query: 719 AESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKS-CQATVNEEFKFTVQVS---- 773
                Q+         +++D        K     +G     +     +  + V +S    
Sbjct: 75  P---LQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTV 131

Query: 774 -----ISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDF 828
                  P  ++ W  +D+ +   ++ K +        LK  + E+     + C      
Sbjct: 132 ILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFS-ELEQSGYYVCYPRGSK 190

Query: 829 GQSITSCFLKLNV 841
                + +L L  
Sbjct: 191 P-EDANFYLYLRA 202

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 60.7 bits (146), Expect = 2e-10
 Identities = 22/174 (12%), Positives = 48/174 (27%), Gaps = 41/174 (23%)

Query: 381 IHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS--------- 431
           I W+++ + +      + + +       L S +    G + C       +          
Sbjct: 32  ITWFKDGKMIGFLTEDKKKWN-------LGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGS 84

Query: 432 -HCSCELSVLVPKA-------------YKAPFFTKELEAILTEQGTVSLECKVMGIPTPQ 477
              + + +     A              +    T+    +     TV L C     P  +
Sbjct: 85  ADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQ--YPGSE 142

Query: 478 LIWYKDNKKIKAGDIFALTANPKDPSSL---------GTYTCEAVNCMGAAFST 522
           ++W  ++K I   +      + +D  SL         G Y C          + 
Sbjct: 143 ILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANF 196

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 60.7 bits (146), Expect = 2e-10
 Identities = 21/157 (13%), Positives = 40/157 (25%), Gaps = 22/157 (14%)

Query: 296 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ--------VP 347
           G     +  D +   N+    +D  G Y    S         +     +           
Sbjct: 38  GKMIGFLTEDKKK-WNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKD 96

Query: 348 DAPAFIRRLH----DIAVKVGTRARLLVEIRSPT---------EIKIHWYRNDRKLEENK 394
           DA     +      +  +   T+    V I   T           +I W  ND+ +  ++
Sbjct: 97  DAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDE 156

Query: 395 IYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS 431
             +       +        L  SG + C    +    
Sbjct: 157 DDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPED 193

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 57.2 bits (137), Expect = 3e-09
 Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 18/144 (12%)

Query: 857 VLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKII-----SGEDGTCCLGIYTCE 911
              E G+V L C         + WFKDG+ +      K       + +D     G+Y C+
Sbjct: 14  DYQEDGSVLLTC---DAEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPR---GMYQCK 67

Query: 912 AHNCMGTTSSSAALLGFEDKSQIEKAEEGKKALIVKDPSLSTIQEEGTSEIYDTPMASIE 971
                         +G  D ++       K A    D      +++G+    +    +  
Sbjct: 68  GSQNKSKPLQVYYRMGSADDAK-------KDAAKKDDAKKDDAKKDGSDGNEEMGGITQT 120

Query: 972 EREISFSFDGKEVSVSLYETPDLT 995
             ++S S     ++   Y   ++ 
Sbjct: 121 PYKVSISGTTVILTCPQYPGSEIL 144

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 53.7 bits (128), Expect = 5e-08
 Identities = 21/200 (10%), Positives = 49/200 (24%), Gaps = 45/200 (22%)

Query: 557 VENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLE 616
           V+    +   S +L C          I W+ K+G +            LG  + +     
Sbjct: 10  VKVYDYQEDGSVLLTCDAEAKN----ITWF-KDGKMIGFLTEDKKKWNLGSNAKD----- 59

Query: 617 AVDDGEWKCVATSSSG-----------VKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDD 665
               G ++C  + +                           K     +        M   
Sbjct: 60  --PRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGI 117

Query: 666 GLVSFECKVVG---------FPTPTLQWFKDNEELKPGDVYQLTGTSSL----------- 705
               ++  + G         +P   + W  +++ +   +  +  G+              
Sbjct: 118 TQTPYKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELE 177

Query: 706 --GSYCCVAKNVMGKAESST 723
             G Y C  +    +  +  
Sbjct: 178 QSGYYVCYPRGSKPEDANFY 197

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 48.0 bits (113), Expect = 3e-06
 Identities = 18/161 (11%), Positives = 39/161 (24%), Gaps = 12/161 (7%)

Query: 82  GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR 141
           G     +  D +   N+    +D  G Y    S         +     +      A  + 
Sbjct: 38  GKMIGFLTEDKKK-WNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKD 96

Query: 142 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTI-----PFSFRAQ-----GDHPIFGNR 191
                      +    E+   T+   +  ++ T      P    ++      D  I G+ 
Sbjct: 97  DAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDE 156

Query: 192 FRAINRDGRTELNIRRVRR-DDGGRYSVTASNESGYSTAKF 231
                      L+++     +  G Y              +
Sbjct: 157 DDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFY 197

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 48.0 bits (113), Expect = 3e-06
 Identities = 18/161 (11%), Positives = 39/161 (24%), Gaps = 12/161 (7%)

Query: 189 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRR 248
           G     +  D +   N+    +D  G Y    S         +     +      A  + 
Sbjct: 38  GKMIGFLTEDKKK-WNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKD 96

Query: 249 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTI-----PFSFRAQ-----GDHPIFGNR 298
                      +    E+   T+   +  ++ T      P    ++      D  I G+ 
Sbjct: 97  DAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDE 156

Query: 299 FRAINRDGRTELNIRRVRR-DDGGRYSVTASNESGYSTAKF 338
                      L+++     +  G Y              +
Sbjct: 157 DDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFY 197

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 45.3 bits (106), Expect = 3e-05
 Identities = 20/174 (11%), Positives = 34/174 (19%), Gaps = 53/174 (30%)

Query: 2   GIPTPQLIWYKDNKKIKAGD----IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIA 57
                 + W+KD K I         + L +N KDP   G Y C+              + 
Sbjct: 26  DAEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPR--GMYQCKGSQNKSKPLQVYYRMG 83

Query: 58  RGQQSFLDNDDVPFNRAQG----------------------------------------- 76
               +  D       +                                            
Sbjct: 84  SADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSEI 143

Query: 77  -----DHPIFGNRFRAINRDGRTELNIRRVRR-DDGGRYSVTASNESGYSTAKF 124
                D  I G+            L+++     +  G Y              +
Sbjct: 144 LWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFY 197

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 73.2 bits (180), Expect = 7e-16
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 9/84 (10%)

Query: 847 KPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHK-IISG---EDG 901
           + + + E +   ++ GG V L C+V   P P + W KDG  L        I+     +D 
Sbjct: 10  EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQ 69

Query: 902 TCCLGIYTCEAHNCMGTTSSSAAL 925
               G Y+C A +       S A+
Sbjct: 70  ----GTYSCVATHSSHGPQESRAV 89

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 68.2 bits (167), Expect = 4e-14
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELK--PGDVYQLTGTSSL-- 705
           + + V   +      G  V+  C+V   P+P + W KD   L   P  V  L        
Sbjct: 10  EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQ 69

Query: 706 GSYCCVAKNVMGKAESSTQLTI 727
           G+Y CVA +     + S  ++I
Sbjct: 70  GTYSCVATHSSHGPQESRAVSI 91

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 67.1 bits (164), Expect = 9e-14
 Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 1/83 (1%)

Query: 444 AYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDP 502
             +      E E      G TV+L C+V   P+PQ+ W KD   +       L      P
Sbjct: 7   GLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGP 66

Query: 503 SSLGTYTCEAVNCMGAAFSTSRV 525
              GTY+C A +       +  V
Sbjct: 67  QDQGTYSCVATHSSHGPQESRAV 89

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 60.1 bits (146), Expect = 3e-11
 Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 10/94 (10%)

Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
             + +   +            T +V   P P++ W +D   +    +            L
Sbjct: 10  EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPS----------PVL 59

Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
            +  +   DQ  + C+AT+       S  + +++
Sbjct: 60  ILPEIGPQDQGTYSCVATHSSHGPQESRAVSISI 93

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 9/101 (8%)

Query: 341 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQH 400
           S  S   +    +      AV  G    L  E+ +    +IHW ++   L          
Sbjct: 2   SSGSSGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPL------PP 55

Query: 401 DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV 441
                   L  +   D G ++C+A ++      S  +S+ +
Sbjct: 56  SPVLI---LPEIGPQDQGTYSCVATHSSHGPQESRAVSISI 93

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 12/98 (12%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
               + E E      G +  L C+V   P P  I+W  K+GV        +         
Sbjct: 10  EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSP-QIHWM-KDGVP-----LPLPPSP----V 58

Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSA-AYVHVLMP 646
           + +  +   D G + CVAT SS   Q S    + ++ P
Sbjct: 59  LILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 18/120 (15%), Positives = 28/120 (23%), Gaps = 31/120 (25%)

Query: 127 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD-H 185
           S  S   +    +      AV  G    L           C+                  
Sbjct: 2   SSGSSGLEEVQLVVEPEGGAVAPGGTVTL----------TCE------------VPAQPS 39

Query: 186 PIF-----GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP 240
           P       G     +       L +  +   D G YS  A++ S        +S+    P
Sbjct: 40  PQIHWMKDGVP---LPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 18/120 (15%), Positives = 28/120 (23%), Gaps = 31/120 (25%)

Query: 234 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD-H 292
           S  S   +    +      AV  G    L           C+                  
Sbjct: 2   SSGSSGLEEVQLVVEPEGGAVAPGGTVTL----------TCE------------VPAQPS 39

Query: 293 PIF-----GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP 347
           P       G     +       L +  +   D G YS  A++ S        +S+    P
Sbjct: 40  PQIHWMKDGVP---LPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 14/54 (25%), Positives = 20/54 (37%)

Query: 2  GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRV 55
            P+PQ+ W KD   +       L      P   GTY+C A +       +  V
Sbjct: 36 AQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAV 89

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 9/46 (19%), Positives = 16/46 (34%)

Query: 88  INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP 133
           +       L +  +   D G YS  A++ S        +S+    P
Sbjct: 51  LPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 76.6 bits (188), Expect = 1e-15
 Identities = 31/207 (14%), Positives = 70/207 (33%), Gaps = 43/207 (20%)

Query: 558 ENVKAKIGTSAILECQVLVPP----------WPRS-----IYWYNKEGVVEASDKY---- 598
           +    + G++  +EC+  V            W         + + +E +      Y    
Sbjct: 9   DLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRA 68

Query: 599 HIMADGL--GGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVE 656
            ++ D L  G  +++I  ++  D G ++C+   S G   +    V V  P N        
Sbjct: 69  RLLKDQLSLGNAALQITDVKLQDAGVYRCMI--SYGGADYKRITVKVNAPYNKINQ---- 122

Query: 657 SLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD-----------VYQLTGT--- 702
            +  V          C+  G+P   + W   + ++  G            ++ +T T   
Sbjct: 123 RILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRI 182

Query: 703 --SSLGSYCCVAKNVMGKAESSTQLTI 727
             ++   + C  + +  +   + +L I
Sbjct: 183 NTTTNEIFYCTFRRLDPEENHTAELVI 209

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 65.4 bits (159), Expect = 7e-12
 Identities = 26/201 (12%), Positives = 58/201 (28%), Gaps = 39/201 (19%)

Query: 759 QATVNEEFKFTVQVSISP-----EPKVSWFRDDQQVVESDNVKILKE------------- 800
                       +  +          V W  +D+ +++  + +   +             
Sbjct: 12  VVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLL 71

Query: 801 ----TLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKA 856
               +LG   L+I  +++ D   ++C+ +   G       +K+N P +         +  
Sbjct: 72  KDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQ----RILV 126

Query: 857 VLSEGGAVNLECKVIGVPQPTLKWFK-DGRELKAGDIHKIISGEDGTCCL---------- 905
           V        L C+  G P+  + W   D + L           E+    +          
Sbjct: 127 VDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTT 186

Query: 906 -GIYTCEAHNCMGTTSSSAAL 925
             I+ C         + +A L
Sbjct: 187 NEIFYCTFRRLDPEENHTAEL 207

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 58.9 bits (142), Expect = 1e-09
 Identities = 23/183 (12%), Positives = 56/183 (30%), Gaps = 37/183 (20%)

Query: 375 SPTEIKIHWYRNDRKL-----------EENKIY--RTQ------HDGNFYFIDLSSVSLF 415
               + ++W   D+ +            ++  Y  R +        GN     ++ V L 
Sbjct: 32  DLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQ-ITDVKLQ 90

Query: 416 DSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPT 475
           D+G + C+     G  +    + V  P           +  +        L C+  G P 
Sbjct: 91  DAGVYRCMISYG-GADYKRITVKVNAPYNKINQ----RILVVDPVTSEHELTCQAEGYPK 145

Query: 476 PQLIWYKDNKKIKAGDIFALTANPKD------------PSSLGTYTCEAVNCMGAAFSTS 523
            ++IW   + ++ +G      +  ++             ++   + C           T+
Sbjct: 146 AEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTA 205

Query: 524 RVI 526
            ++
Sbjct: 206 ELV 208

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 53.5 bits (128), Expect = 6e-08
 Identities = 24/158 (15%), Positives = 49/158 (31%), Gaps = 13/158 (8%)

Query: 292 HPIFGNR---FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 348
           H  +  R    +     G   L I  V+  D G Y    S   G    +  + V +    
Sbjct: 61  HSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISY-GGADYKRITVKVNAPYNK 119

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
               I     +   V +   L  +    P + ++ W  +D ++   K   T         
Sbjct: 120 INQRI----LVVDPVTSEHELTCQAEGYP-KAEVIWTSSDHQVLSGKTTTTNSKREEKLF 174

Query: 408 DLSS---VSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
           +++S   ++   +  + C         + + EL +   
Sbjct: 175 NVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPEL 212

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 73.9 bits (181), Expect = 1e-15
 Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 27/127 (21%)

Query: 632 GVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEE 690
           G       +   L+P+      FV++  +     G  V   C+ VG P P +QW+ + + 
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQG 61

Query: 691 LKPGDV----------------YQLTGTSSL----------GSYCCVAKNVMGKAESSTQ 724
                                 Y     S++          G+Y C A N   +   +  
Sbjct: 62  PNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRA 121

Query: 725 LTIEDIR 731
             ++ +R
Sbjct: 122 PRVKWVR 128

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 70.8 bits (173), Expect = 1e-14
 Identities = 24/129 (18%), Positives = 40/129 (31%), Gaps = 24/129 (18%)

Query: 428 VGRSHCSCE-LSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNK 485
           +G SH      S LVP+      F +   +     G +V L C+ +G P P++ W+ + +
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQ 60

Query: 486 KIKAGDIFALTANPKDPSSL----------------------GTYTCEAVNCMGAAFSTS 523
                          D   +                      GTY C A N       T 
Sbjct: 61  GPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTR 120

Query: 524 RVIARGQQS 532
               +  ++
Sbjct: 121 APRVKWVRA 129

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 68.9 bits (168), Expect = 6e-14
 Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 23/108 (21%)

Query: 841 VPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHK----- 894
           VP+      F++   +     GG+V L C+ +G P P ++W+ +G+              
Sbjct: 15  VPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGAR 74

Query: 895 -------IISGEDGTCCL----------GIYTCEAHNCMGTTSSSAAL 925
                      +     +          G Y C A N       + A 
Sbjct: 75  LDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAP 122

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 62.0 bits (150), Expect = 2e-11
 Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 12/103 (11%)

Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDN------------V 795
              F++   S Q  V    +   +   SP P++ W+ + Q   +  +            +
Sbjct: 21  MAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHI 80

Query: 796 KILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
                      + I  L   D   ++C A+ND  ++  +   +
Sbjct: 81  HATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPR 123

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 59.3 bits (143), Expect = 1e-10
 Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 19/111 (17%)

Query: 345 QVPDAPAFIRRLHDIAVKVGTRARLLVEIR---SPTEIKIHWYRNDRKLEENK------- 394
           +      F++        VG    L  E      P    I W+   +   +         
Sbjct: 17  RGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPE---IQWWFEGQGPNDICSQLWDGA 73

Query: 395 ------IYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
                 I+ T H      I + ++   D+G + C A N   R+H +    V
Sbjct: 74  RLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 52.3 bits (125), Expect = 4e-08
 Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 14/111 (12%)

Query: 542 NSLMPPGP-APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY------------NK 588
           + L+P G     F++   + +  +G S  L C+ +  P P  I W+              
Sbjct: 12  SGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPE-IQWWFEGQGPNDICSQLW 70

Query: 589 EGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAA 639
           +G        H         +I I+ L   D G ++C A++       + A
Sbjct: 71  DGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRA 121

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 51.9 bits (124), Expect = 5e-08
 Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 3/115 (2%)

Query: 131 QVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQ-GDHPI 187
           +      F++        VG    L  E   SP  EI+  F+         +   G    
Sbjct: 17  RGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLD 76

Query: 188 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 242
             +     ++   + ++I  +  +D G Y   ASN+   +       V+     A
Sbjct: 77  RVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQA 131

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 51.9 bits (124), Expect = 5e-08
 Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 3/115 (2%)

Query: 238 QVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPT-EIKCQFDLNNTIPFSFRAQ-GDHPI 294
           +      F++        VG    L  E   SP  EI+  F+         +   G    
Sbjct: 17  RGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLD 76

Query: 295 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 349
             +     ++   + ++I  +  +D G Y   ASN+   +       V+     A
Sbjct: 77  RVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQA 131

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 73.3 bits (180), Expect = 1e-15
 Identities = 24/89 (26%), Positives = 32/89 (35%), Gaps = 14/89 (15%)

Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL- 905
           P   +      ++  G   L C   G P PT+ W KDG  +   D       E+G   L 
Sbjct: 9   PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQL-ENGV--LQ 65

Query: 906 ---------GIYTCEAHNCMGTTSSSAAL 925
                    G YTC A    G  + SA +
Sbjct: 66  IRYAKLGDTGRYTCIASTPSGEATWSAYI 94

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 69.0 bits (169), Expect = 4e-14
 Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 12/90 (13%)

Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGD-VYQLTGTSSL---- 705
           P   +                C   G P PT+ W KD   +   D   +      L    
Sbjct: 9   PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRY 68

Query: 706 ------GSYCCVAKNVMGKAESSTQLTIED 729
                 G Y C+A    G+A  S  + +++
Sbjct: 69  AKLGDTGRYTCIASTPSGEATWSAYIEVQE 98

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 67.9 bits (166), Expect = 8e-14
 Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 2/94 (2%)

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
            P   +   +  V V     L           I W ++   +        Q +     I 
Sbjct: 8   PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQI- 66

Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
                L D+GR+TC+A    G +  S  + V   
Sbjct: 67  -RYAKLGDTGRYTCIASTPSGEATWSAYIEVQEF 99

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 65.2 bits (159), Expect = 7e-13
 Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 10/115 (8%)

Query: 545 MPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG--VVEASDKYHIMA 602
                 P+  +   N    +  + +L C     P P +I W  K+G  V     +   + 
Sbjct: 3   SGSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVP-TILWR-KDGVLVSTQDSRIKQLE 60

Query: 603 DGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKN-YRKPRFVE 656
           +G     ++I Y +  D G + C+A++ SG   +S AY+ V       + PR  +
Sbjct: 61  NG----VLQIRYAKLGDTGRYTCIASTPSGEATWS-AYIEVQEFGVPVQPPRPTD 110

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 65.2 bits (159), Expect = 7e-13
 Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 3/97 (3%)

Query: 746 NKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVC 805
           +  P   +G  +    V+  F  +   + SP P + W +D   V   D+     E  GV 
Sbjct: 6   SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLEN-GV- 63

Query: 806 HLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
            L+I   ++ D   + CIA+   G++  S ++++   
Sbjct: 64  -LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEF 99

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 60.2 bits (146), Expect = 4e-11
 Identities = 20/93 (21%), Positives = 29/93 (31%), Gaps = 8/93 (8%)

Query: 441 VPKAYKAPFFTKELE-AILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIF------ 493
              +   P   +      +   GT  L C   G P P ++W KD   +   D        
Sbjct: 2   SSGSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLEN 61

Query: 494 -ALTANPKDPSSLGTYTCEAVNCMGAAFSTSRV 525
             L          G YTC A    G A  ++ +
Sbjct: 62  GVLQIRYAKLGDTGRYTCIASTPSGEATWSAYI 94

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 47.8 bits (114), Expect = 9e-07
 Identities = 25/131 (19%), Positives = 34/131 (25%), Gaps = 36/131 (27%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD---------- 184
            P   +   +  V V     L           C             A G           
Sbjct: 8   PPVIRQGPVNQTVAVDGTFVL----------SC------------VATGSPVPTILWRKD 45

Query: 185 -HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 243
              +     R    +    L IR  +  D GRY+  AS  SG +T    + V  Q    P
Sbjct: 46  GVLVSTQDSRIKQLENGV-LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEV--QEFGVP 102

Query: 244 AFIRRLHDIAV 254
               R  D  +
Sbjct: 103 VQPPRPTDPNL 113

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 47.8 bits (114), Expect = 9e-07
 Identities = 25/131 (19%), Positives = 34/131 (25%), Gaps = 36/131 (27%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD---------- 291
            P   +   +  V V     L           C             A G           
Sbjct: 8   PPVIRQGPVNQTVAVDGTFVL----------SC------------VATGSPVPTILWRKD 45

Query: 292 -HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 350
              +     R    +    L IR  +  D GRY+  AS  SG +T    + V  Q    P
Sbjct: 46  GVLVSTQDSRIKQLENGV-LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEV--QEFGVP 102

Query: 351 AFIRRLHDIAV 361
               R  D  +
Sbjct: 103 VQPPRPTDPNL 113

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 3/71 (4%)

Query: 77  DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 136
              +     R    +    L IR  +  D GRY+  AS  SG +T    + V  Q    P
Sbjct: 46  GVLVSTQDSRIKQLENGV-LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEV--QEFGVP 102

Query: 137 AFIRRLHDIAV 147
               R  D  +
Sbjct: 103 VQPPRPTDPNL 113

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 75.9 bits (186), Expect = 1e-15
 Identities = 33/206 (16%), Positives = 55/206 (26%), Gaps = 17/206 (8%)

Query: 254 VKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGR------ 307
           V       LLV           +   NT           P     F      GR      
Sbjct: 11  VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN 70

Query: 308 TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRA 367
             L  + +   D G Y++  ++E+   T         Q         ++ +  VK     
Sbjct: 71  GSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPV--TQPFLQVTNTTVKELDSV 128

Query: 368 RLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA 427
            L           I W  N + L+  +      + +   I    +   D+G + C   N 
Sbjct: 129 TLTCLSNDI-GANIQWLFNSQSLQLTERMTLSQNNSILRI--DPIKREDAGEYQCEISNP 185

Query: 428 VGRSHC-SCELSVLVPKAYKAPFFTK 452
           V      S +L ++       P    
Sbjct: 186 VSVRRSNSIKLDIIFD-----PHHHH 206

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 66.2 bits (161), Expect = 3e-12
 Identities = 26/193 (13%), Positives = 57/193 (29%), Gaps = 31/193 (16%)

Query: 759 QATVNEEFKFTVQVSISPEPKVSWFRDD----QQVVESDNVKILKETLGVCH-------- 806
           Q   +      V          +W++ +     + +            G  +        
Sbjct: 10  QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS 69

Query: 807 ---LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGA 863
              L    + + D   +    T++  +  T   ++ +V +   +P        V  E  +
Sbjct: 70  NGSLLFQMITMKDMGVYTLDMTDENYRR-TQATVRFHVHQPVTQPFLQVTNTTV-KELDS 127

Query: 864 VNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------GIYTCEAH 913
           V L C         ++W  + + L+  +    +S  +    L          G Y CE  
Sbjct: 128 VTLTCLS-NDIGANIQWLFNSQSLQLTE-RMTLSQNNSI--LRIDPIKREDAGEYQCEIS 183

Query: 914 NCMGTTSSSAALL 926
           N +    S++  L
Sbjct: 184 NPVSVRRSNSIKL 196

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 65.5 bits (159), Expect = 5e-12
 Identities = 28/223 (12%), Positives = 60/223 (26%), Gaps = 53/223 (23%)

Query: 459 TEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIF------------------------- 493
            E   V L    + +      WYK N      +I                          
Sbjct: 12  AEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG 71

Query: 494 ALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIF 553
           +L         +G YT +  +        +                         P    
Sbjct: 72  SLLFQMITMKDMGVYTLDMTDENYRRTQATVR------------------FHVHQPVTQP 113

Query: 554 IKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEIN 613
             +V N   K   S  L C         +I W      ++ +++  +  +      + I+
Sbjct: 114 FLQVTNTTVKELDSVTLTCLSNDI--GANIQWLFNSQSLQLTERMTLSQN---NSILRID 168

Query: 614 YLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVE 656
            ++  D GE++C  ++   V++ ++  + ++       P    
Sbjct: 169 PIKREDAGEYQCEISNPVSVRRSNSIKLDIIFD-----PHHHH 206

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 64.7 bits (157), Expect = 9e-12
 Identities = 32/204 (15%), Positives = 59/204 (28%), Gaps = 24/204 (11%)

Query: 147 VKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGR------ 200
           V       LLV           +   NT           P     F      GR      
Sbjct: 11  VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN 70

Query: 201 TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRA 260
             L  + +   D G Y++  ++E+   T         Q         ++ +  VK     
Sbjct: 71  GSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPV--TQPFLQVTNTTVKELDSV 128

Query: 261 RLLVEIRSP-TEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDD 319
            L          I+  F+ + ++  + R              ++++    L I  ++R+D
Sbjct: 129 TLTCLSNDIGANIQWLFN-SQSLQLTERMT------------LSQNNSI-LRIDPIKRED 174

Query: 320 GGRYSVTASNESGYSTAK-FELSV 342
            G Y    SN      +   +L +
Sbjct: 175 AGEYQCEISNPVSVRRSNSIKLDI 198

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 64.7 bits (157), Expect = 9e-12
 Identities = 23/203 (11%), Positives = 53/203 (26%), Gaps = 50/203 (24%)

Query: 668 VSFECKVVGFPTPTLQWFKDNEELK---------------PGDVYQ----LTGTSSL--- 705
           V      +        W+K N                    G  Y     +    SL   
Sbjct: 17  VLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQ 76

Query: 706 -------GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSC 758
                  G Y     +   +   +T                +    +    +    + + 
Sbjct: 77  MITMKDMGVYTLDMTDENYRRTQAT----------------VRFHVHQPVTQPFLQVTNT 120

Query: 759 QATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQA 818
                +    T   +      + W  + Q +  ++ + + +       L+I  ++  D  
Sbjct: 121 TVKELDSVTLTCLSN-DIGANIQWLFNSQSLQLTERMTLSQNN---SILRIDPIKREDAG 176

Query: 819 EWKCIATNDFGQSITSCFLKLNV 841
           E++C  +N       S  +KL++
Sbjct: 177 EYQCEISNPVSVR-RSNSIKLDI 198

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 60.8 bits (147), Expect = 2e-10
 Identities = 22/142 (15%), Positives = 48/142 (33%), Gaps = 18/142 (12%)

Query: 96  LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 155
           L  + +   D G Y++  ++E+   T         Q         ++ +  VK      L
Sbjct: 73  LLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPV--TQPFLQVTNTTVKELDSVTL 130

Query: 156 LVEIRSP-TEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGG 214
                     I+  F+ + ++  + R              ++++    L I  ++R+D G
Sbjct: 131 TCLSNDIGANIQWLFN-SQSLQLTERMT------------LSQNNSI-LRIDPIKREDAG 176

Query: 215 RYSVTASNESGYSTAK-FELSV 235
            Y    SN      +   +L +
Sbjct: 177 EYQCEISNPVSVRRSNSIKLDI 198

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 23/176 (13%), Positives = 42/176 (23%), Gaps = 51/176 (28%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIF-------------------------ALTANPKDPSSLG 36
            +      WYK N      +I                          +L         +G
Sbjct: 25  PLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMG 84

Query: 37  TYTCEAVNCMGAAFSTSRVIARGQ-----------QSFLDNDDVPFNRAQGDHPI----- 80
            YT +  +        +      Q            +  + D V       D        
Sbjct: 85  VYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIGANIQWL 144

Query: 81  -------FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK-FELSV 128
                     R   ++++    L I  ++R+D G Y    SN      +   +L +
Sbjct: 145 FNSQSLQLTERMT-LSQNNSI-LRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDI 198

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 71.9 bits (177), Expect = 2e-15
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL 409
               + L+ + V VG  A   +E+  P ++   W    + L  +       DG  + + L
Sbjct: 6   IEVEKPLYGVEVFVGETAHFEIELSEP-DVHGQWKLKGQPLAASPDCEIIEDGKKHILIL 64

Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
            +  L  +G  +  A N       +  L V
Sbjct: 65  HNCQLGMTGEVSFQAANT----KSAANLKV 90

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 71.2 bits (175), Expect = 3e-15
 Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH 806
              +  + L   +  V E   F +++S  P+    W    Q +  S + +I+++      
Sbjct: 4   ALIEVEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDG-KKHI 61

Query: 807 LKIHALEVADQAEWKCIATND 827
           L +H  ++    E    A N 
Sbjct: 62  LILHNCQLGMTGEVSFQAANT 82

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 67.7 bits (166), Expect = 4e-14
 Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 17/91 (18%)

Query: 846 KKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC 904
              +  + L  V +  G   + E ++   P    +W   G+ L A    +II  +     
Sbjct: 4   ALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIE-DGKKHI 61

Query: 905 L----------GIYTCEAHNCMGTTSSSAAL 925
           L          G  + +A      T S+A L
Sbjct: 62  LILHNCQLGMTGEVSFQA----ANTKSAANL 88

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 66.2 bits (162), Expect = 2e-13
 Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 19/95 (20%)

Query: 650 RKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL 705
                 + L  V    G    FE ++   P    QW    + L      ++        L
Sbjct: 4   ALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHIL 62

Query: 706 ----------GSYCCVAKNVMGKAESSTQLTIEDI 730
                     G     A N     +S+  L ++++
Sbjct: 63  ILHNCQLGMTGEVSFQAAN----TKSAANLKVKEL 93

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 6/85 (7%)

Query: 549 PAPI-FIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLG 606
            A I   K +  V+  +G +A  E ++  P       W   +G  + AS    I+ DG  
Sbjct: 3   MALIEVEKPLYGVEVFVGETAHFEIELSEP--DVHGQWK-LKGQPLAASPDCEIIEDG-K 58

Query: 607 GYSIEINYLEAVDDGEWKCVATSSS 631
            + + ++  +    GE    A ++ 
Sbjct: 59  KHILILHNCQLGMTGEVSFQAANTK 83

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 13/87 (14%)

Query: 444 AYKAPFFTKELEAI-LTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDP 502
           A       K L  + +    T   E ++   P     W    + + A     +  +    
Sbjct: 2   AMALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIED-GKK 59

Query: 503 SSL----------GTYTCEAVNCMGAA 519
             L          G  + +A N   AA
Sbjct: 60  HILILHNCQLGMTGEVSFQAANTKSAA 86

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 19/103 (18%)

Query: 136 PAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPI-FGNRFR 193
               + L+ + V VG  A   +E+  P    + +                 P+       
Sbjct: 6   IEVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLK-------------GQPLAASPDCE 52

Query: 194 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
            I    +  L +   +    G  S  A+N    S A   L V+
Sbjct: 53  IIEDGKKHILILHNCQLGMTGEVSFQAANTK--SAAN--LKVK 91

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 19/103 (18%)

Query: 243 PAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPI-FGNRFR 300
               + L+ + V VG  A   +E+  P    + +                 P+       
Sbjct: 6   IEVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLK-------------GQPLAASPDCE 52

Query: 301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
            I    +  L +   +    G  S  A+N    S A   L V+
Sbjct: 53  IIEDGKKHILILHNCQLGMTGEVSFQAANTK--SAAN--LKVK 91

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 72.4 bits (178), Expect = 2e-15
 Identities = 19/100 (19%), Positives = 43/100 (43%), Gaps = 8/100 (8%)

Query: 743 LTNNKAPKFIEGLKSCQ-ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKET 801
           +   K+  F + L+     +   + + TV+++   + +V W ++ Q++  S +  I +  
Sbjct: 10  MDEKKSTAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESI 68

Query: 802 LGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
                L I    +AD A ++C+   +       C  +L V
Sbjct: 69  GAKRTLTISQCSLADDAAYQCVVGGE------KCSTELFV 102

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 71.6 bits (176), Expect = 3e-15
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 7/97 (7%)

Query: 345 QVPDAPAFIRRLHDI-AVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEE-NKIYRTQHDG 402
               + AF ++L     V  G + RL VE+    + ++ W +N ++++     Y  +  G
Sbjct: 11  DEKKSTAFQKKLEPAYQVSKGHKIRLTVELADH-DAEVKWLKNGQEIQMSGSKYIFESIG 69

Query: 403 NFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
               + +S  SL D   + C+         CS EL V
Sbjct: 70  AKRTLTISQCSLADDAAYQCVVGGE----KCSTELFV 102

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 69.3 bits (170), Expect = 2e-14
 Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 17/92 (18%)

Query: 846 KKPKFLEELKAVLS--EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTC 903
           K   F ++L+      +G  + L  ++       +KW K+G+E++      I        
Sbjct: 14  KSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKR 72

Query: 904 CL----------GIYTCEAHNCMGTTSSSAAL 925
            L            Y C      G    S  L
Sbjct: 73  TLTISQCSLADDAAYQCVV----GGEKCSTEL 100

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 21/106 (19%)

Query: 640 YVHVLMPKNYRKPRFVESLKAVMT--DDGLVSFECKVVGFPTPTLQWFKDNEELKP-GDV 696
           + H       +   F + L+          +    ++       ++W K+ +E++  G  
Sbjct: 4   HHHHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSK 62

Query: 697 YQLT---GTSSL----------GSYCCVAKNVMGKAESSTQLTIED 729
           Y         +L           +Y CV     G  + ST+L +++
Sbjct: 63  YIFESIGAKRTLTISQCSLADDAAYQCVV----GGEKCSTELFVKE 104

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 19/89 (21%)

Query: 446 KAPFFTKELEAILT--EQGTVSLECKVMGIPTPQLIWYKDNKKIKA----------GDIF 493
           K+  F K+LE      +   + L  ++      ++ W K+ ++I+           G   
Sbjct: 14  KSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKR 72

Query: 494 ALT---ANPKDPSSLGTYTCEAVNCMGAA 519
            LT    +  D      Y C       + 
Sbjct: 73  TLTISQCSLAD---DAAYQCVVGGEKCST 98

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 53.9 bits (130), Expect = 5e-09
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 7/87 (8%)

Query: 549 PAPIFIKEVE-NVKAKIGTSAILECQVLVPPWPRSIYWYNKEG--VVEASDKYHIMADGL 605
            +  F K++E   +   G    L  ++        + W  K G  +  +  KY   + G 
Sbjct: 14  KSTAFQKKLEPAYQVSKGHKIRLTVELADHD--AEVKWL-KNGQEIQMSGSKYIFESIG- 69

Query: 606 GGYSIEINYLEAVDDGEWKCVATSSSG 632
              ++ I+     DD  ++CV      
Sbjct: 70  AKRTLTISQCSLADDAAYQCVVGGEKC 96

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 17/108 (15%)

Query: 131 QVPDAPAFIRRLHDI-AVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPIF 188
               + AF ++L     V  G + RL VE+     E+K   +    I  S          
Sbjct: 11  DEKKSTAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKN-GQEIQMS---------- 59

Query: 189 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
           G+++   +   +  L I +    D   Y      E        EL V+
Sbjct: 60  GSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKC----STELFVK 103

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 17/108 (15%)

Query: 238 QVPDAPAFIRRLHDI-AVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPIF 295
               + AF ++L     V  G + RL VE+     E+K   +    I  S          
Sbjct: 11  DEKKSTAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKN-GQEIQMS---------- 59

Query: 296 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
           G+++   +   +  L I +    D   Y      E        EL V+
Sbjct: 60  GSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKC----STELFVK 103

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 11/86 (12%)

Query: 847 KPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGD-----IHKIISGED 900
           K +   E  +  L  G  + L+C  +G P P  +WFK+   L         +   +  E 
Sbjct: 3   KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPY-VDLEH 61

Query: 901 GTCCLGIYTCEAHNCMGTTSSSAALL 926
                G Y C  +N   +  S    +
Sbjct: 62  Q----GTYWCHVYNDRDSQDSKKVEI 83

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 68.9 bits (169), Expect = 2e-14
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGD--VYQLTGTSSL-- 705
           K +      +     G  +  +C  VG P P  QWFK+   L      +Y +        
Sbjct: 3   KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQ 62

Query: 706 GSYCCVAKNVMGKAESST-QLTIEDIRN 732
           G+Y C   N     +S   ++ I+++ N
Sbjct: 63  GTYWCHVYNDRDSQDSKKVEIIIDELNN 90

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 58.9 bits (143), Expect = 6e-11
 Identities = 18/80 (22%), Positives = 25/80 (31%), Gaps = 1/80 (1%)

Query: 448 PFFTKELE-AILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLG 506
                E     L    T+ L+C  +G P P   W+K+   +             D    G
Sbjct: 4   LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQG 63

Query: 507 TYTCEAVNCMGAAFSTSRVI 526
           TY C   N   +  S    I
Sbjct: 64  TYWCHVYNDRDSQDSKKVEI 83

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 11/93 (11%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLK 808
            +      S +               SP P   WF+++  +                   
Sbjct: 4   LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK----------LYM 53

Query: 809 IHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
           +  +++  Q  + C   ND   S  S  +++ +
Sbjct: 54  VPYVDLEHQGTYWCHVYNDRD-SQDSKKVEIII 85

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 12/81 (14%), Positives = 19/81 (23%), Gaps = 9/81 (11%)

Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL 409
                      +  G+   L             W++N+  L       T      Y +  
Sbjct: 4   LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL-------THETKKLYMV-- 54

Query: 410 SSVSLFDSGRWTCLAENAVGR 430
             V L   G + C   N    
Sbjct: 55  PYVDLEHQGTYWCHVYNDRDS 75

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 13/55 (23%), Positives = 17/55 (30%)

Query: 2  GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 56
          G P P   W+K+   +             D    GTY C   N   +  S    I
Sbjct: 29 GSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEI 83

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 72.0 bits (177), Expect = 2e-15
 Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 17/91 (18%)

Query: 846 KKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC 904
              +F E LK + + EGGA  L C +  V  P +KW      L+ GD + +   E     
Sbjct: 7   GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQ-EGAMLE 64

Query: 905 L----------GIYTCEAHNCMGTTSSSAAL 925
           L          G Y+C      G  ++SA L
Sbjct: 65  LVVRNLRPQDSGRYSCSF----GDQTTSATL 91

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 71.6 bits (176), Expect = 3e-15
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 5/94 (5%)

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
              F   L D+ V  G  A L   + S     + W   +  L     Y  + +G    + 
Sbjct: 8   PVRFQEALKDLEVLEGGAATLRCVLSSVAA-PVKWCYGNNVLRPGDKYSLRQEGAMLELV 66

Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
           + ++   DSGR++C      G    S  L+V   
Sbjct: 67  VRNLRPQDSGRYSCSF----GDQTTSATLTVTAL 96

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 71.2 bits (175), Expect = 4e-15
 Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 6/91 (6%)

Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH 806
              +F E LK  +            +S    P V W   +  +   D   + +E   +  
Sbjct: 7   GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEG-AMLE 64

Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFL 837
           L +  L   D   + C      G   TS  L
Sbjct: 65  LVVRNLRPQDSGRYSCSF----GDQTTSATL 91

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 19/92 (20%)

Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL-- 705
            RF E+LK +   +G   +  C +     P ++W   N  L+PGD Y L        L  
Sbjct: 9   VRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVV 67

Query: 706 --------GSYCCVAKNVMGKAESSTQLTIED 729
                   G Y C      G   +S  LT+  
Sbjct: 68  RNLRPQDSGRYSCSF----GDQTTSATLTVTA 95

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 8/95 (8%)

Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGY 608
               F + +++++   G +A L C +     P  + W     V+   DKY +  +G    
Sbjct: 7   GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP--VKWCYGNNVLRPGDKYSLRQEG-AML 63

Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
            + +  L   D G + C     +     ++A + V
Sbjct: 64  ELVVRNLRPQDSGRYSCSFGDQT-----TSATLTV 93

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 442 PKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPK 500
             +     F + L+ +   +G   +L C +  +  P + W   N  ++ GD ++L     
Sbjct: 3   SGSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQE-G 60

Query: 501 DPSSL----------GTYTCEAVNCMGAAFSTSRVI 526
               L          G Y+C      G   +++ + 
Sbjct: 61  AMLELVVRNLRPQDSGRYSCSF----GDQTTSATLT 92

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 53.9 bits (130), Expect = 5e-09
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 20/112 (17%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRS-PTEIKCQFDLNNTIPFSFRAQGDHPIF-GNRF 192
              F   L D+ V  G  A L   + S    +K  +              ++ +  G+++
Sbjct: 8   PVRFQEALKDLEVLEGGAATLRCVLSSVAAPVKWCYG-------------NNVLRPGDKY 54

Query: 193 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA 244
                    EL +R +R  D GRYS +  +++  ++A   L+V + +P  P+
Sbjct: 55  SLRQEGAMLELVVRNLRPQDSGRYSCSFGDQT--TSA--TLTVTA-LPSGPS 101

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 53.9 bits (130), Expect = 5e-09
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 20/112 (17%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIRS-PTEIKCQFDLNNTIPFSFRAQGDHPIF-GNRF 299
              F   L D+ V  G  A L   + S    +K  +              ++ +  G+++
Sbjct: 8   PVRFQEALKDLEVLEGGAATLRCVLSSVAAPVKWCYG-------------NNVLRPGDKY 54

Query: 300 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA 351
                    EL +R +R  D GRYS +  +++  ++A   L+V + +P  P+
Sbjct: 55  SLRQEGAMLELVVRNLRPQDSGRYSCSFGDQT--TSA--TLTVTA-LPSGPS 101

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 6/63 (9%)

Query: 76  GDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 134
           G++ +  G+++         EL +R +R  D GRYS +  +++  ++A   L+V + +P 
Sbjct: 44  GNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSFGDQT--TSA--TLTVTA-LPS 98

Query: 135 APA 137
            P+
Sbjct: 99  GPS 101

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 74.4 bits (182), Expect = 4e-15
 Identities = 29/215 (13%), Positives = 61/215 (28%), Gaps = 33/215 (15%)

Query: 538 DVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDK 597
             PF + +      ++I E +        + ++ C   +     S+     E        
Sbjct: 3   RSPFIASVSDQHGVVYITENK------NKTVVIPCLGSISNLNVSLCARYPEKRFVPDGN 56

Query: 598 YHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVES 657
             I  D   G++I    +     G   C A  +    Q S  Y+ V++           S
Sbjct: 57  R-ISWDSKKGFTIPSYMIS--YAGMVFCEAKINDESYQ-SIMYIVVVVGYRIYDVVLSPS 112

Query: 658 LKAVMTDDGLVSFECKVVGFPTP--TLQWFKDNEELKPGDVYQ-----------LTGTSS 704
               ++    +   C             W   + + +   +                 S+
Sbjct: 113 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 172

Query: 705 L----------GSYCCVAKNVMGKAESSTQLTIED 729
           L          G Y C A + +   ++ST + + +
Sbjct: 173 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 207

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 71.4 bits (174), Expect = 5e-14
 Identities = 31/194 (15%), Positives = 53/194 (27%), Gaps = 17/194 (8%)

Query: 262 LLVEIRSPTEIKCQF---DLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRD 318
           +         I C     +LN ++        +     +  R I+ D +    I      
Sbjct: 19  ITENKNKTVVIPCLGSISNLNVSL---CARYPEKRFVPDGNR-ISWDSKKGFTIPSYMIS 74

Query: 319 DGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL--LVEIRSP 376
             G     A        +   + V          +   H I + VG +  L         
Sbjct: 75  YAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELN 134

Query: 377 TEIKIHWYRNDRKLEENKI---YRTQHDGNFYFIDLS-----SVSLFDSGRWTCLAENAV 428
             I  +W     K +  K+         G+     LS      V+  D G +TC A + +
Sbjct: 135 VGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 194

Query: 429 GRSHCSCELSVLVP 442
                S  + V   
Sbjct: 195 MTKKNSTFVRVHED 208

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 69.8 bits (170), Expect = 2e-13
 Identities = 25/198 (12%), Positives = 55/198 (27%), Gaps = 23/198 (11%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSIS-PEPKVSWFR-DDQQVVESDNVKILKETLGVCH 806
               +       T N+     +    S     VS      ++    D  +I  ++     
Sbjct: 8   ASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKK--G 65

Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNL 866
             I +  ++      C A  +     +  ++ + V                LS G  + L
Sbjct: 66  FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVL 125

Query: 867 ECKVIGVPQP--TLKWFKDGRELKAGD-IHKIISGEDGTCCL----------------GI 907
            C             W     + +    +++ +  + G+                   G+
Sbjct: 126 NCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGL 185

Query: 908 YTCEAHNCMGTTSSSAAL 925
           YTC A + + T  +S  +
Sbjct: 186 YTCAASSGLMTKKNSTFV 203

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 67.9 bits (165), Expect = 7e-13
 Identities = 28/192 (14%), Positives = 53/192 (27%), Gaps = 7/192 (3%)

Query: 155 LLVEIRSPTEIKCQF---DLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRD 211
           +         I C     +LN ++        +     +  R I+ D +    I      
Sbjct: 19  ITENKNKTVVIPCLGSISNLNVSL---CARYPEKRFVPDGNR-ISWDSKKGFTIPSYMIS 74

Query: 212 DGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTE 271
             G     A        +   + V          +   H I + VG +  L    R+   
Sbjct: 75  YAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELN 134

Query: 272 IKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNES 331
           +   F+           +  +     +  +  +   + L I  V R D G Y+  AS+  
Sbjct: 135 VGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 194

Query: 332 GYSTAKFELSVE 343
                   + V 
Sbjct: 195 MTKKNSTFVRVH 206

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 66.7 bits (162), Expect = 2e-12
 Identities = 25/168 (14%), Positives = 46/168 (27%), Gaps = 1/168 (0%)

Query: 69  VPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
           V       +     +  R I+ D +    I        G     A        +   + V
Sbjct: 40  VSLCARYPEKRFVPDGNR-ISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVV 98

Query: 129 ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF 188
                     +   H I + VG +  L    R+   +   F+           +  +   
Sbjct: 99  VVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDL 158

Query: 189 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
             +  +  +   + L I  V R D G Y+  AS+          + V 
Sbjct: 159 KTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 206

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 62.5 bits (151), Expect = 5e-11
 Identities = 20/189 (10%), Positives = 47/189 (24%), Gaps = 22/189 (11%)

Query: 358 DIAVKVGTRARLLVEIRSP-TEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFD 416
            I         +          + +     +++   +    +      + I   S  +  
Sbjct: 18  YITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTI--PSYMISY 75

Query: 417 SGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTP 476
           +G   C A+           + V+V         +      L+    + L C        
Sbjct: 76  AGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNV 135

Query: 477 --QLIWYKDNKKIKAGDIFALTANPKDPSSL-----------------GTYTCEAVNCMG 517
                W   + K +   +       +  S +                 G YTC A + + 
Sbjct: 136 GIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLM 195

Query: 518 AAFSTSRVI 526
              +++ V 
Sbjct: 196 TKKNSTFVR 204

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 53.3 bits (127), Expect = 7e-08
 Identities = 24/208 (11%), Positives = 50/208 (24%), Gaps = 35/208 (16%)

Query: 656 ESLKAVMTDDGLVSFECKV-VGFPTPTLQWFKDNEELKP-----------GDVYQLTGTS 703
             +      +  V   C   +     +L      +   P           G        S
Sbjct: 15  GVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMIS 74

Query: 704 SLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVN 763
             G   C AK      +S   + +               +        +      + +V 
Sbjct: 75  YAGMVFCEAKINDESYQSIMYIVVV--------------VGYRIYDVVLSPSHGIELSVG 120

Query: 764 EEFKFTVQVSISPEPKV--SWFRDDQQVVESDNVKILKETLGVCH-------LKIHALEV 814
           E+              +  +W     +      V    +T            L I  +  
Sbjct: 121 EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTR 180

Query: 815 ADQAEWKCIATNDFGQSITSCFLKLNVP 842
           +DQ  + C A++       S F++++  
Sbjct: 181 SDQGLYTCAASSGLMTKKNSTFVRVHED 208

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 25/161 (15%), Positives = 39/161 (24%), Gaps = 36/161 (22%)

Query: 5   TPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFL 64
            P+  +  D  +I        T      S  G   CEA     +  S   ++        
Sbjct: 46  YPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIY 105

Query: 65  DNDDVP-------------------------------FNRAQGDHPIFGNRFRAI----- 88
           D    P                               +  ++  H    NR         
Sbjct: 106 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSE 165

Query: 89  NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
            +   + L I  V R D G Y+  AS+          + V 
Sbjct: 166 MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 206

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 70.5 bits (173), Expect = 7e-15
 Identities = 12/102 (11%), Positives = 24/102 (23%), Gaps = 5/102 (4%)

Query: 344 SQVPDAPAFIRRLHDIAVKVGTRARLLVEI-RSPTEIKIHWYRNDRKLEENKIYRTQHDG 402
           S         +RL  + V  G        +          W    + +  +  ++    G
Sbjct: 3   SGSSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQG 62

Query: 403 NFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKA 444
             Y + +   +  D+G                  L V     
Sbjct: 63  RKYILVVREAAPSDAGEVVFSVRGLT----SKASLIVRERSG 100

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 68.6 bits (168), Expect = 3e-14
 Identities = 13/95 (13%), Positives = 25/95 (26%), Gaps = 6/95 (6%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
               + LK+ +    E   F   +S  S      W    + V  S   +  ++      L
Sbjct: 9   VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQG-RKYIL 67

Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
            +     +D  E             +   L +   
Sbjct: 68  VVREAAPSDAGEVVFSV----RGLTSKASLIVRER 98

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 64.3 bits (157), Expect = 9e-13
 Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 17/90 (18%)

Query: 848 PKFLEELKAV-LSEGGAVNLECKV-IGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL 905
               + LK + + EG + + EC +          W   G+ + +    +    +     L
Sbjct: 9   VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATR-QGRKYIL 67

Query: 906 ----------GIYTCEAHNCMGTTSSSAAL 925
                     G             +S A+L
Sbjct: 68  VVREAAPSDAGEVVFSV----RGLTSKASL 93

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 19/95 (20%)

Query: 650 RKPRFVESLKAVMTDDG-LVSFECKV-VGFPTPTLQWFKDNEELKPGDVYQLT---GTSS 704
                 + LK +   +G   SFEC +     +    W    + +     +Q T       
Sbjct: 7   GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYI 66

Query: 705 L----------GSYCCVAKNVMGKAESSTQLTIED 729
           L          G      + +  KA     L + +
Sbjct: 67  LVVREAAPSDAGEVVFSVRGLTSKAS----LIVRE 97

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 4/86 (4%)

Query: 549 PAPI-FIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLG 606
              +   K ++ ++   G S   EC +          W    G  V +S ++     G  
Sbjct: 6   SGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWT-VGGKTVGSSSRFQATRQG-R 63

Query: 607 GYSIEINYLEAVDDGEWKCVATSSSG 632
            Y + +      D GE        + 
Sbjct: 64  KYILVVREAAPSDAGEVVFSVRGLTS 89

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 14/84 (16%), Positives = 23/84 (27%), Gaps = 13/84 (15%)

Query: 448 PFFTKELEAILTEQG-TVSLECKV-MGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL 505
              TK L+ +   +G + S EC +     +   +W    K + +   F  T        L
Sbjct: 9   VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQ-GRKYIL 67

Query: 506 ----------GTYTCEAVNCMGAA 519
                     G            A
Sbjct: 68  VVREAAPSDAGEVVFSVRGLTSKA 91

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 19/117 (16%)

Query: 130 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFS-FRAQGDHPI- 187
           S         +RL  + V  G        +            + + P       G   + 
Sbjct: 3   SGSSGHVGITKRLKTMEVLEGESCSFECVLSHE---------SASDPAMWTV--GGKTVG 51

Query: 188 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA 244
             +RF+A  +  +  L +R     D G    +    +  S A   L V  +    P+
Sbjct: 52  SSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLT--SKAS--LIV--RERSGPS 102

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 19/117 (16%)

Query: 237 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFS-FRAQGDHPI- 294
           S         +RL  + V  G        +            + + P       G   + 
Sbjct: 3   SGSSGHVGITKRLKTMEVLEGESCSFECVLSHE---------SASDPAMWTV--GGKTVG 51

Query: 295 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA 351
             +RF+A  +  +  L +R     D G    +    +  S A   L V  +    P+
Sbjct: 52  SSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLT--SKAS--LIV--RERSGPS 102

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 76  GDHPI-FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPD 134
           G   +   +RF+A  +  +  L +R     D G    +    +  S A   L V  +   
Sbjct: 46  GGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLT--SKAS--LIV--RERS 99

Query: 135 APA 137
            P+
Sbjct: 100 GPS 102

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 70.2 bits (172), Expect = 9e-15
 Identities = 20/102 (19%), Positives = 28/102 (27%), Gaps = 17/102 (16%)

Query: 848 PKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKI----ISGEDGTC 903
           P                 +   V G P+P L+WF +G  L             +  +   
Sbjct: 5   PTITFLESPT--SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHG 62

Query: 904 CL----------GIYTCEAHNCMGTTSSSAALLGFEDKSQIE 935
           CL          G YT  A N  G      +   F     I+
Sbjct: 63  CLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH-FMGWPGID 103

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 67.5 bits (165), Expect = 9e-14
 Identities = 19/96 (19%), Positives = 21/96 (21%), Gaps = 20/96 (20%)

Query: 652 PRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT--------GTS 703
           P                     V G P P LQWF +   L                    
Sbjct: 5   PTITFLESPTSDHH--WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHG 62

Query: 704 SL----------GSYCCVAKNVMGKAESSTQLTIED 729
            L          G Y  +AKN  GK E         
Sbjct: 63  CLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 60.9 bits (148), Expect = 1e-11
 Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 7/98 (7%)

Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQ-----HDGNF 404
              I  L            +   ++   +  + W+ N   L E+K   T+     H    
Sbjct: 4   APTITFLES--PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH 61

Query: 405 YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
             + L + +  ++G +T +A+N  G+         +  
Sbjct: 62  GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW 99

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 59.8 bits (145), Expect = 4e-11
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 6/96 (6%)

Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI----LKETL 802
                I  L+S   T +  +     V  +P+P + WF +   + ES  +         T 
Sbjct: 2   HFAPTITFLES--PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTE 59

Query: 803 GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
               L++      +  ++  IA N++G+        
Sbjct: 60  YHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH 95

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 59.0 bits (143), Expect = 8e-11
 Identities = 15/102 (14%), Positives = 22/102 (21%), Gaps = 21/102 (20%)

Query: 439 VLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTAN 498
           V        P  T              +   V G P P L W+ +   +          +
Sbjct: 1   VHFA-----PTITFLESPT--SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIH 53

Query: 499 PKDPSSL--------------GTYTCEAVNCMGAAFSTSRVI 526
             + +                G YT  A N  G         
Sbjct: 54  VTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH 95

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 44.7 bits (106), Expect = 8e-06
 Identities = 8/56 (14%), Positives = 15/56 (26%)

Query: 75  QGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 130
                I        + +    L +      + G Y++ A NE G    +       
Sbjct: 43  NESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 44.7 bits (106), Expect = 8e-06
 Identities = 8/56 (14%), Positives = 15/56 (26%)

Query: 182 QGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 237
                I        + +    L +      + G Y++ A NE G    +       
Sbjct: 43  NESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 44.7 bits (106), Expect = 8e-06
 Identities = 8/56 (14%), Positives = 15/56 (26%)

Query: 289 QGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
                I        + +    L +      + G Y++ A NE G    +       
Sbjct: 43  NESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 11/98 (11%), Positives = 33/98 (33%), Gaps = 8/98 (8%)

Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGG--- 607
              I  +E+  +       +   V   P P ++ W+    ++  S               
Sbjct: 4   APTITFLESPTS--DHHWCIPFTVKGNPKP-ALQWFYNGAILNESKYICTKIHVTNHTEY 60

Query: 608 -YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL 644
              ++++    +++G++  +A +  G  +      H +
Sbjct: 61  HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ-ISAHFM 97

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 11/69 (15%), Positives = 17/69 (24%), Gaps = 14/69 (20%)

Query: 2  GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL--------------GTYTCEAVNCMG 47
          G P P L W+ +   +          +  + +                G YT  A N  G
Sbjct: 27 GNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYG 86

Query: 48 AAFSTSRVI 56
                   
Sbjct: 87 KDEKQISAH 95

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 70.1 bits (172), Expect = 1e-14
 Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 11/107 (10%)

Query: 341 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI----Y 396
           S  S  P     +  L D  V VG R  + VE+      ++ W +N  +L         Y
Sbjct: 2   SSGSSGP--VLIVTPLEDQQVFVGDRVEMAVEVSEE-GAQVMWMKNGVELTREDSFKARY 58

Query: 397 RTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPK 443
           R + DG  + +  S V   D GR+  +         C  EL V   +
Sbjct: 59  RFKKDGKRHILIFSDVVQEDRGRYQVITNG----GQCEAELIVEEKQ 101

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 67.0 bits (164), Expect = 1e-13
 Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 12/97 (12%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDN----VKILKETLGV 804
              +  L+  Q  V +  +  V+VS     +V W ++  ++   D+     +  K+    
Sbjct: 9   VLIVTPLEDQQVFVGDRVEMAVEVS-EEGAQVMWMKNGVELTREDSFKARYRFKKDG-KR 66

Query: 805 CHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
             L    +   D+  ++ I           C  +L V
Sbjct: 67  HILIFSDVVQEDRGRYQVITNGG------QCEAELIV 97

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 62.4 bits (152), Expect = 5e-12
 Identities = 16/92 (17%), Positives = 24/92 (26%), Gaps = 19/92 (20%)

Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKI---ISGEDGTC 903
              +  L+   +  G  V +  +V       + W K+G EL   D  K       +    
Sbjct: 9   VLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67

Query: 904 CL----------GIYTCEAHNCMGTTSSSAAL 925
            L          G Y              A L
Sbjct: 68  ILIFSDVVQEDRGRYQVIT----NGGQCEAEL 95

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 15/110 (13%)

Query: 543 SLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASD----K 597
           S    GP  + +  +E+ +  +G    +  +V        + W  K GV +   D    +
Sbjct: 2   SSGSSGP-VLIVTPLEDQQVFVGDRVEMAVEVSEEGAQ--VMWM-KNGVELTREDSFKAR 57

Query: 598 YHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPK 647
           Y    DG   + +  + +   D G ++ +            A + V   +
Sbjct: 58  YRFKKDG-KRHILIFSDVVQEDRGRYQVITNGGQ-----CEAELIVEEKQ 101

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 56.6 bits (137), Expect = 5e-10
 Identities = 16/96 (16%), Positives = 26/96 (27%), Gaps = 23/96 (23%)

Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDV----YQLT---GTS 703
              V  L+      G  V    +V       + W K+  EL   D     Y+        
Sbjct: 9   VLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67

Query: 704 SL----------GSYCCVAKNVMGKAESSTQLTIED 729
            L          G Y  +        +   +L +E+
Sbjct: 68  ILIFSDVVQEDRGRYQVITNG----GQCEAELIVEE 99

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 27/111 (24%), Positives = 38/111 (34%), Gaps = 15/111 (13%)

Query: 127 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDH 185
           S  S  P     +  L D  V VG R  + VE+     ++    +    +          
Sbjct: 2   SSGSSGP--VLIVTPLEDQQVFVGDRVEMAVEVSEEGAQVMWMKN-GVELTRE------- 51

Query: 186 PIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
             F  R+R      R  L    V ++D GRY V  +       A  EL VE
Sbjct: 52  DSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGGQ--CEA--ELIVE 98

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 27/111 (24%), Positives = 38/111 (34%), Gaps = 15/111 (13%)

Query: 234 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDH 292
           S  S  P     +  L D  V VG R  + VE+     ++    +    +          
Sbjct: 2   SSGSSGP--VLIVTPLEDQQVFVGDRVEMAVEVSEEGAQVMWMKN-GVELTRE------- 51

Query: 293 PIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
             F  R+R      R  L    V ++D GRY V  +       A  EL VE
Sbjct: 52  DSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGGQ--CEA--ELIVE 98

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 14/86 (16%), Positives = 22/86 (25%), Gaps = 15/86 (17%)

Query: 448 PFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFA------------ 494
                 LE      G  V +  +V      Q++W K+  ++   D F             
Sbjct: 9   VLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67

Query: 495 -LTANPKDPSSLGTYTCEAVNCMGAA 519
            L  +       G Y          A
Sbjct: 68  ILIFSDVVQEDRGRYQVITNGGQCEA 93

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 69.3 bits (170), Expect = 1e-14
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 5/97 (5%)

Query: 343 ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDG 402
           E       AF ++   + V  G+ A    E      +K+ W R    +  +  Y    +G
Sbjct: 2   EPGKKPVSAFSKKPRSVEVAAGSPAVFEAETERA-GVKVRWQRGGSDISASNKYGLATEG 60

Query: 403 NFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
             + + +  V   D G +  +A    G S    +L V
Sbjct: 61  TRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKV 93

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 67.8 bits (166), Expect = 5e-14
 Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 10/94 (10%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH-L 807
             F +  +S +        F  +       KV W R    +  S+   +  E  G  H L
Sbjct: 9   SAFSKKPRSVEVAAGSPAVFEAETE-RAGVKVRWQRGGSDISASNKYGLATE--GTRHTL 65

Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
            +  +  ADQ  +  IA +            L V
Sbjct: 66  TVREVGPADQGSYAVIAGSS------KVKFDLKV 93

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 19/97 (19%)

Query: 842 PKHYKKPK--FLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISG 898
           P+  KKP   F ++ ++V ++ G     E +        ++W + G ++ A + + + + 
Sbjct: 1   PEPGKKPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLAT- 58

Query: 899 EDGTCCL----------GIYTCEAHNCMGTTSSSAAL 925
           E     L          G Y   A    G++     L
Sbjct: 59  EGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDL 91

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 62.7 bits (153), Expect = 3e-12
 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGG 607
           P   F K+  +V+   G+ A+ E +         + W  + G  + AS+KY +  +G   
Sbjct: 7   PVSAFSKKPRSVEVAAGSPAVFEAETERAGVK--VRWQ-RGGSDISASNKYGLATEG-TR 62

Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
           +++ +  +   D G +  +A SS          + V
Sbjct: 63  HTLTVREVGPADQGSYAVIAGSSK-----VKFDLKV 93

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 19/92 (20%)

Query: 651 KPRFVESLKAVMTDDGL-VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL- 705
              F +  ++V    G    FE +        ++W +   ++   + Y L       +L 
Sbjct: 8   VSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHTLT 66

Query: 706 ---------GSYCCVAKNVMGKAESSTQLTIE 728
                    GSY  +A    G ++    L + 
Sbjct: 67  VREVGPADQGSYAVIA----GSSKVKFDLKVI 94

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 25/110 (22%), Positives = 37/110 (33%), Gaps = 19/110 (17%)

Query: 129 ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSP-TEIKCQFDLNNTIPFSFRAQGDHPI 187
           E       AF ++   + V  G+ A    E      +++ Q                  I
Sbjct: 2   EPGKKPVSAFSKKPRSVEVAAGSPAVFEAETERAGVKVRWQRG-------------GSDI 48

Query: 188 -FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
              N++       R  L +R V   D G Y+V A    G S  KF+L V 
Sbjct: 49  SASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKVI 94

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 25/110 (22%), Positives = 37/110 (33%), Gaps = 19/110 (17%)

Query: 236 ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSP-TEIKCQFDLNNTIPFSFRAQGDHPI 294
           E       AF ++   + V  G+ A    E      +++ Q                  I
Sbjct: 2   EPGKKPVSAFSKKPRSVEVAAGSPAVFEAETERAGVKVRWQRG-------------GSDI 48

Query: 295 -FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
              N++       R  L +R V   D G Y+V A    G S  KF+L V 
Sbjct: 49  SASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKVI 94

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 15/91 (16%)

Query: 442 PKAYKAP--FFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTAN 498
           P+  K P   F+K+  ++    G     E +       ++ W +    I A + + L   
Sbjct: 1   PEPGKKPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATE 59

Query: 499 PKDPSSL----------GTYTCEAVNCMGAA 519
                +L          G+Y   A +     
Sbjct: 60  -GTRHTLTVREVGPADQGSYAVIAGSSKVKF 89

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 82  GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
            N++       R  L +R V   D G Y+V A    G S  KF+L V 
Sbjct: 51  SNKYGLATEGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKVI 94

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 76.8 bits (189), Expect = 2e-14
 Identities = 23/106 (21%), Positives = 48/106 (45%)

Query: 334 STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN 393
                  +   +    P FI + +   V  G  A     + + +   + W+++DR+L+++
Sbjct: 467 QEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQS 526

Query: 394 KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
             Y  +++GN Y + ++ V   D G +T  A+N+ G       L+V
Sbjct: 527 VKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 76.0 bits (187), Expect = 3e-14
 Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 6/129 (4%)

Query: 710 CVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFT 769
                 +    S  +   ++     +  D+     +   P+FI      +    +   F 
Sbjct: 449 LPPLGRISNYSSLRKHRPQEYSIRDAFWDR-----SEAQPRFIVKPYGTEVGEGQSANFY 503

Query: 770 VQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFG 829
            +V  S  P V+W +DD+++ +S              L I+ ++  D+ E+   A N +G
Sbjct: 504 CRVIASSPPVVTWHKDDRELKQSVKYMKRYNG-NDYGLTINRVKGDDKGEYTVRAKNSYG 562

Query: 830 QSITSCFLK 838
                 FL 
Sbjct: 563 TKEEIVFLN 571

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 72.2 bits (177), Expect = 4e-13
 Identities = 25/98 (25%), Positives = 35/98 (35%), Gaps = 12/98 (12%)

Query: 840 NVPKHYKKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISG 898
              +   +P+F+ +     + EG + N  C+VI    P + W KD RELK    +     
Sbjct: 475 FWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRY- 533

Query: 899 EDGTCCL----------GIYTCEAHNCMGTTSSSAALL 926
                 L          G YT  A N  GT      L 
Sbjct: 534 NGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 64.5 bits (157), Expect = 1e-10
 Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 14/95 (14%)

Query: 647 KNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GT 702
           ++  +PRF+         +G   +F C+V+    P + W KD+ ELK    Y        
Sbjct: 478 RSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGND 537

Query: 703 SSL----------GSYCCVAKNVMGKAESSTQLTI 727
             L          G Y   AKN  G  E    L +
Sbjct: 538 YGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 58.3 bits (141), Expect = 1e-08
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 2/93 (2%)

Query: 546 PPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGL 605
                P FI +    +   G SA   C+V+    P  + W+  +  ++ S KY    +G 
Sbjct: 478 RSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPP-VVTWHKDDRELKQSVKYMKRYNG- 535

Query: 606 GGYSIEINYLEAVDDGEWKCVATSSSGVKQFSA 638
             Y + IN ++  D GE+   A +S G K+   
Sbjct: 536 NDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIV 568

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 56.4 bits (136), Expect = 4e-08
 Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 9/102 (8%)

Query: 434 SCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK----- 488
           S   +       +  F  K     + E  + +  C+V+    P + W+KD++++K     
Sbjct: 470 SIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKY 529

Query: 489 ----AGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
                G+ + LT N       G YT  A N  G       + 
Sbjct: 530 MKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 55.2 bits (133), Expect = 9e-08
 Identities = 24/119 (20%), Positives = 36/119 (30%), Gaps = 16/119 (13%)

Query: 120 STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEI--RSPTEIKCQFDLNNTIPF 177
                  +   +    P FI + +   V  G  A     +   SP  +    D       
Sbjct: 467 QEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKD------- 519

Query: 178 SFRAQGDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
                 D  +    ++          L I RV+ DD G Y+V A N  G       L+V
Sbjct: 520 ------DRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 55.2 bits (133), Expect = 9e-08
 Identities = 24/119 (20%), Positives = 36/119 (30%), Gaps = 16/119 (13%)

Query: 227 STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEI--RSPTEIKCQFDLNNTIPF 284
                  +   +    P FI + +   V  G  A     +   SP  +    D       
Sbjct: 467 QEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKD------- 519

Query: 285 SFRAQGDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
                 D  +    ++          L I RV+ DD G Y+V A N  G       L+V
Sbjct: 520 ------DRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 76  GDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
            D  +    ++          L I RV+ DD G Y+V A N  G       L+V
Sbjct: 519 DDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 43.3 bits (102), Expect = 4e-04
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 9/64 (14%)

Query: 2   GIPTPQLIWYKDNKKIK---------AGDIFALTANPKDPSSLGTYTCEAVNCMGAAFST 52
               P + W+KD++++K          G+ + LT N       G YT  A N  G     
Sbjct: 508 ASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEI 567

Query: 53  SRVI 56
             + 
Sbjct: 568 VFLN 571

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 72.1 bits (176), Expect = 2e-14
 Identities = 24/181 (13%), Positives = 55/181 (30%), Gaps = 24/181 (13%)

Query: 760 ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAE 819
           A + +    T   +    P  SW       +       +        L ++ +   ++  
Sbjct: 13  AQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN----GKVTNEGTTSTLTMNPVSFGNEHS 68

Query: 820 WKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGV---PQP 876
           + C AT +  +      +++ +    K P+    L   L  G  + ++C V  V    + 
Sbjct: 69  YLCTATCESRKLEKG--IQVEIYSFPKDPEI--HLSGPLEAGKPITVKCSVADVYPFDRL 124

Query: 877 TLKWFKDGRELKAGDIHKII---SGEDGTCCL----------GIYTCEAHNCMGTTSSSA 923
            +   K    +K+ +  +     S E  +  +           +  C A   +    S  
Sbjct: 125 EIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVP 184

Query: 924 A 924
            
Sbjct: 185 T 185

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 66.3 bits (161), Expect = 2e-12
 Identities = 28/180 (15%), Positives = 45/180 (25%), Gaps = 34/180 (18%)

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCVAKNVMG 717
           VS  C   G  +P   W    +    G V     TS+L           SY C A     
Sbjct: 19  VSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESR 78

Query: 718 KAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVS-ISP 776
           K E   Q+ I                     PK  E   S      +       V+ + P
Sbjct: 79  KLEKGIQVEI------------------YSFPKDPEIHLSGPLEAGKPITVKCSVADVYP 120

Query: 777 EPK--VSWFRDDQQVVESDNVKILKETL---GVCHLKIHALEVADQAEWKCIATNDFGQS 831
             +  +   + D  +   + ++             +    +         C A     + 
Sbjct: 121 FDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEM 180

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 65.9 bits (160), Expect = 3e-12
 Identities = 20/183 (10%), Positives = 43/183 (23%), Gaps = 23/183 (12%)

Query: 359 IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSG 418
              ++G    L             W          K+             ++ VS  +  
Sbjct: 11  YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLT---MNPVSFGNEH 67

Query: 419 RWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMG---IPT 475
            + C A     +     ++ +              L   L     ++++C V        
Sbjct: 68  SYLCTATCESRKLEKGIQVEIYSFP----KDPEIHLSGPLEAGKPITVKCSVADVYPFDR 123

Query: 476 PQLIWYKDNKKIKAGDIF-------------ALTANPKDPSSLGTYTCEAVNCMGAAFST 522
            ++   K +  +K+ +                +T  P          C A   +    S 
Sbjct: 124 LEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSV 183

Query: 523 SRV 525
             V
Sbjct: 184 PTV 186

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 64.8 bits (157), Expect = 7e-12
 Identities = 29/203 (14%), Positives = 64/203 (31%), Gaps = 21/203 (10%)

Query: 254 VKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIR 313
           ++    +R L +I     + C      +  FS+R Q D P+ G   +  N    + L + 
Sbjct: 3   IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG---KVTNEGTTSTLTMN 59

Query: 314 RVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL---L 370
            V   +   Y  TA+ ES       ++    ++   P          ++ G    +   +
Sbjct: 60  PVSFGNEHSYLCTATCESRKLEKGIQV----EIYSFPKDPEIHLSGPLEAGKPITVKCSV 115

Query: 371 VEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYF----IDLSSVSLFDSGRWTCLAEN 426
            ++     ++I   + D  ++  +        +       +  + V         C A+ 
Sbjct: 116 ADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKL 175

Query: 427 AVGR-------SHCSCELSVLVP 442
            +              EL V + 
Sbjct: 176 HIDEMDSVPTVRQAVKELQVYIS 198

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 56.7 bits (136), Expect = 5e-09
 Identities = 31/198 (15%), Positives = 55/198 (27%), Gaps = 31/198 (15%)

Query: 453 ELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIF------ALTANPKDPSSLG 506
           E   +     +VSL C   G  +P   W         G +        LT NP    +  
Sbjct: 8   ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEH 67

Query: 507 TYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGT 566
           +Y C A           +V             +      P       ++         G 
Sbjct: 68  SYLCTATCESRKLEKGIQVE------------IYSFPKDPEIHLSGPLEA--------GK 107

Query: 567 SAILECQVL-VPPWPR-SIYWYNKEGVVEASDKYHIMADG-LGGYSIEINYLEAVDD--G 621
              ++C V  V P+ R  I     + ++++ +         L   S+E+ +   ++D   
Sbjct: 108 PITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGK 167

Query: 622 EWKCVATSSSGVKQFSAA 639
              C A            
Sbjct: 168 VLVCRAKLHIDEMDSVPT 185

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 49.4 bits (117), Expect = 1e-06
 Identities = 34/183 (18%), Positives = 53/183 (28%), Gaps = 31/183 (16%)

Query: 73  RAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV 132
           R Q D P+ G   +  N    + L +  V   +   Y  TA+ ES       ++    ++
Sbjct: 36  RTQIDSPLNG---KVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV----EI 88

Query: 133 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRA----QGDHPIF 188
              P          ++ G           P  +KC     +  PF        +GDH + 
Sbjct: 89  YSFPKDPEIHLSGPLEAG----------KPITVKCSVA--DVYPFDRLEIDLLKGDHLMK 136

Query: 189 GNRFRAINRDGRTE-----LNIRRVRRDDGGRYSVTASN---ESGYSTAKFELSVESQVP 240
              F         E     +    V  D G      A     E        +   E QV 
Sbjct: 137 SQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVY 196

Query: 241 DAP 243
            +P
Sbjct: 197 ISP 199

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 47.1 bits (111), Expect = 8e-06
 Identities = 17/108 (15%), Positives = 28/108 (25%), Gaps = 19/108 (17%)

Query: 853 ELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL------- 905
           E + +   G +V+L C   G   P   W           ++  ++ E  T  L       
Sbjct: 8   ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSP----LNGKVTNEGTTSTLTMNPVSF 63

Query: 906 ---GIYTCEAHNCMGTTSSSAAL-----LGFEDKSQIEKAEEGKKALI 945
                Y C A            +         +       E GK   +
Sbjct: 64  GNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITV 111

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 68.9 bits (169), Expect = 2e-14
 Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH- 806
                + L+   A   E  +   +VS   +  V WF++ ++++     +      G  H 
Sbjct: 7   GIMVTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI 65

Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
           L I     AD AE+  + T       +S  L +++ 
Sbjct: 66  LIIEGATKADAAEYSVMTTGGQ----SSAKLSVDLK 97

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 68.1 bits (167), Expect = 5e-14
 Identities = 16/96 (16%), Positives = 37/96 (38%), Gaps = 7/96 (7%)

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKL--EENKIYRTQHDGNFYF 406
                ++L D     G R  L  E+    +  + W++N  ++       YR + +G  + 
Sbjct: 7   GIMVTKQLEDTTAYCGERVELECEVSED-DANVKWFKNGEEIIPGPKSRYRIRVEGKKHI 65

Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
           + +   +  D+  ++ +          S +LSV + 
Sbjct: 66  LIIEGATKADAAEYSVMTTGG----QSSAKLSVDLK 97

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 64.3 bits (157), Expect = 9e-13
 Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 17/90 (18%)

Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL- 905
               ++L+      G  V LEC+V       +KWFK+G E+  G   +     +G   + 
Sbjct: 8   IMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHIL 66

Query: 906 ----------GIYTCEAHNCMGTTSSSAAL 925
                       Y+           SSA L
Sbjct: 67  IIEGATKADAAEYSVMT----TGGQSSAKL 92

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 55.8 bits (135), Expect = 9e-10
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 12/98 (12%)

Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVV---EASDKYHIMADGL 605
              +  K++E+  A  G    LEC+V       ++ W+ K G         +Y I  +G 
Sbjct: 6   SGIMVTKQLEDTTAYCGERVELECEVSEDD-A-NVKWF-KNGEEIIPGPKSRYRIRVEG- 61

Query: 606 GGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
             + + I      D  E+  + T        S+A + V
Sbjct: 62  KKHILIIEGATKADAAEYSVMTTGGQ-----SSAKLSV 94

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 21/94 (22%)

Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGD-----VYQLTGTSSL 705
               + L+      G  V  EC+V       ++WFK+ EE+ PG      +        L
Sbjct: 8   IMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHIL 66

Query: 706 ----------GSYCCVAKNVMGKAESSTQLTIED 729
                       Y  +        +SS +L+++ 
Sbjct: 67  IIEGATKADAAEYSVMTTG----GQSSAKLSVDL 96

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 15/107 (14%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 193
                ++L D     G R  L  E+      +K   +    I    ++         R+R
Sbjct: 7   GIMVTKQLEDTTAYCGERVELECEVSEDDANVKWFKN-GEEIIPGPKS---------RYR 56

Query: 194 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP 240
                 +  L I    + D   YSV  +     S+AK  LSV+ +  
Sbjct: 57  IRVEGKKHILIIEGATKADAAEYSVMTTGGQ--SSAK--LSVDLKSG 99

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 15/107 (14%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 300
                ++L D     G R  L  E+      +K   +    I    ++         R+R
Sbjct: 7   GIMVTKQLEDTTAYCGERVELECEVSEDDANVKWFKN-GEEIIPGPKS---------RYR 56

Query: 301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP 347
                 +  L I    + D   YSV  +     S+AK  LSV+ +  
Sbjct: 57  IRVEGKKHILIIEGATKADAAEYSVMTTGGQ--SSAK--LSVDLKSG 99

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 13/85 (15%)

Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKA-----------GDIFA 494
               TK+LE      G  V LEC+V       + W+K+ ++I             G    
Sbjct: 7   GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI 65

Query: 495 LTANPKDPSSLGTYTCEAVNCMGAA 519
           L       +    Y+        +A
Sbjct: 66  LIIEGATKADAAEYSVMTTGGQSSA 90

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 70.6 bits (173), Expect = 3e-14
 Identities = 32/189 (16%), Positives = 55/189 (29%), Gaps = 33/189 (17%)

Query: 748 APKFIEGLKSCQATV--NEEFKFTVQVSISPEP-KVSWFRDDQQVVESDNVKILKETLGV 804
            PK +  L+     V   +    T Q + SPE   + WF +   +               
Sbjct: 2   PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ---------- 51

Query: 805 CHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAV 864
                      D  E+ C        +  S  + L V   ++    L+       EG  +
Sbjct: 52  -PSYRFKANNNDSGEYTCQTGQ----TSLSDPVHLTV--LFE-WLVLQTPHLEFQEGETI 103

Query: 865 NLECKVI-GVPQPTLKWFKDGRELKAGD------IHKIISGEDGTCCLGIYTCEAHNCMG 917
            L C      P   + +F++G+  K         I +  +        G Y C  +    
Sbjct: 104 MLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQA-NHSHS----GDYHCTGNIGYT 158

Query: 918 TTSSSAALL 926
             SS    +
Sbjct: 159 LFSSKPVTI 167

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 67.9 bits (166), Expect = 3e-13
 Identities = 29/154 (18%), Positives = 44/154 (28%), Gaps = 25/154 (16%)

Query: 375 SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCS 434
           SP    I W+ N   +         H    Y       +  DSG +TC            
Sbjct: 31  SPESDSIQWFHNGNLIPT-------HTQPSY---RFKANNNDSGEYTCQTGQTSL--SDP 78

Query: 435 CELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVM-GIPTPQLIWYKDNKKIK---AG 490
             L+VL           +       E  T+ L C      P  ++ ++++ K  K     
Sbjct: 79  VHLTVLFE-----WLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLD 133

Query: 491 DIFALT-ANPKDPSSLGTYTCEAVNCMGAAFSTS 523
             F++  AN       G Y C          S  
Sbjct: 134 PTFSIPQANHSHS---GDYHCTGNIGYTLFSSKP 164

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 63.7 bits (155), Expect = 1e-11
 Identities = 30/186 (16%), Positives = 56/186 (30%), Gaps = 28/186 (15%)

Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMADGLGG 607
           P  +   E   +      S  L CQ    P   SI W+ N   +   +   +        
Sbjct: 3   PKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYR------- 55

Query: 608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGL 667
           +    N     D GE+ C    +S        ++ VL      +   +++      +   
Sbjct: 56  FKANNN-----DSGEYTCQTGQTSLSD---PVHLTVL-----FEWLVLQTPHLEFQEGET 102

Query: 668 VSFECKVV-GFPTPTLQWFKDNEELKP---GDVYQLTGTSSL--GSYCCVAKNVMGKAES 721
           +   C      P   + +F++ +  K       + +   +    G Y C          S
Sbjct: 103 IMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTL-FS 161

Query: 722 STQLTI 727
           S  +TI
Sbjct: 162 SKPVTI 167

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 59.8 bits (145), Expect = 2e-10
 Identities = 16/134 (11%), Positives = 37/134 (27%), Gaps = 22/134 (16%)

Query: 304 RDGR------TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 357
            +G             +   +D G Y+      +  S     L+V  +       + +  
Sbjct: 41  HNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQ-TSLSDP-VHLTVLFEWL-----VLQTP 93

Query: 358 DIAVKVGTRARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFD 416
            +  + G    L          +K+ +++N +        +  H    + I     +   
Sbjct: 94  HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQ------KFSHLDPTFSI--PQANHSH 145

Query: 417 SGRWTCLAENAVGR 430
           SG + C        
Sbjct: 146 SGDYHCTGNIGYTL 159

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 28/184 (15%), Positives = 50/184 (27%), Gaps = 38/184 (20%)

Query: 463 TVSLECKVMGIPTPQLI-WYKDNKKIKA--GDIFALTANPKDPSSLGTYTCEAVNCMGAA 519
           +V+L C+    P    I W+ +   I       +   AN  D    G YTC+       +
Sbjct: 21  SVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDS---GEYTCQTGQ---TS 74

Query: 520 FSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPW 579
            S    +            V F  L+   P   F         + G + +L C       
Sbjct: 75  LSDPVHL-----------TVLFEWLVLQTPHLEF---------QEGETIMLRCHSWKDKP 114

Query: 580 PRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAA 639
              + ++ + G                  +  I        G++ C       +      
Sbjct: 115 LVKVTFF-QNGK--------SQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPV 165

Query: 640 YVHV 643
            + V
Sbjct: 166 TITV 169

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 22/146 (15%), Positives = 46/146 (31%), Gaps = 30/146 (20%)

Query: 4   PTPQLIWYKDNKKIKA--GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTS-------- 53
            +  + W+ +   I       +   AN  D    G YTC+       + S          
Sbjct: 33  ESDSIQWFHNGNLIPTHTQPSYRFKANNNDS---GEYTCQTGQ---TSLSDPVHLTVLFE 86

Query: 54  -RVIARGQQSFLDNDDVPFN-RAQGDHPIFGNRFRAINRDGRT--------ELNIRRVRR 103
             V+      F + + +     +  D P+    F    ++G++          +I +   
Sbjct: 87  WLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFF---QNGKSQKFSHLDPTFSIPQANH 143

Query: 104 DDGGRYSVTASNESG-YSTAKFELSV 128
              G Y  T +     +S+    ++V
Sbjct: 144 SHSGDYHCTGNIGYTLFSSKPVTITV 169

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 19/154 (12%), Positives = 38/154 (24%), Gaps = 33/154 (21%)

Query: 90  RDGR------TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 143
            +G             +   +D G Y+      +  S     L+V  +       + +  
Sbjct: 41  HNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQ-TSLSDP-VHLTVLFEWL-----VLQTP 93

Query: 144 DIAVKVGTRARLLVEIRS-PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE 202
            +  + G    L          +K  F  N      F                       
Sbjct: 94  HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGK-SQKFSHLDP-----------------T 135

Query: 203 LNIRRVRRDDGGRYSVTASNESG-YSTAKFELSV 235
            +I +      G Y  T +     +S+    ++V
Sbjct: 136 FSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 19/154 (12%), Positives = 38/154 (24%), Gaps = 33/154 (21%)

Query: 197 RDGR------TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 250
            +G             +   +D G Y+      +  S     L+V  +       + +  
Sbjct: 41  HNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQ-TSLSDP-VHLTVLFEWL-----VLQTP 93

Query: 251 DIAVKVGTRARLLVEIRS-PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE 309
            +  + G    L          +K  F  N      F                       
Sbjct: 94  HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGK-SQKFSHLDP-----------------T 135

Query: 310 LNIRRVRRDDGGRYSVTASNESG-YSTAKFELSV 342
            +I +      G Y  T +     +S+    ++V
Sbjct: 136 FSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 71.8 bits (176), Expect = 4e-14
 Identities = 28/119 (23%), Positives = 41/119 (34%), Gaps = 22/119 (18%)

Query: 818 AEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPT 877
           A +   ++    +             H   PK    +     EG  VN+ C+V   P  T
Sbjct: 1   ATYAAASSALVPR-----------GSHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSAT 49

Query: 878 LKWFKDGRELKAGDIHKI-ISGEDGTCCL----------GIYTCEAHNCMGTTSSSAAL 925
           + WF+DG+ L + +   I I        L          G Y C A N +G  S    L
Sbjct: 50  ISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFIL 108

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 67.5 bits (165), Expect = 1e-12
 Identities = 25/134 (18%), Positives = 42/134 (31%), Gaps = 26/134 (19%)

Query: 706 GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEE 765
            +Y   +  ++ +                             APK  +G  +       +
Sbjct: 1   ATYAAASSALVPRGSHMY------------------------APKL-QGPVAVYTWEGNQ 35

Query: 766 FKFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETLGVCHLKIHALEVADQAEWKCIA 824
              T +V   P   +SWFRD Q +  S+   I +  T    +L++      D   + C A
Sbjct: 36  VNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTA 95

Query: 825 TNDFGQSITSCFLK 838
            N  GQ      L 
Sbjct: 96  VNRIGQESLEFILV 109

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 67.2 bits (164), Expect = 1e-12
 Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 27/124 (21%)

Query: 621 GEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTP 680
             +   +++         A            P+    +     +   V+  C+V  +P+ 
Sbjct: 1   ATYAAASSALVPRGSHMYA------------PKLQGPVAVYTWEGNQVNITCEVFAYPSA 48

Query: 681 TLQWFKDNEELKPGD-----VYQLTGTSSL----------GSYCCVAKNVMGKAESSTQL 725
           T+ WF+D + L   +     +Y     S L          G+Y C A N +G+      L
Sbjct: 49  TISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFIL 108

Query: 726 TIED 729
              D
Sbjct: 109 VQAD 112

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 62.9 bits (153), Expect = 4e-11
 Identities = 18/124 (14%), Positives = 36/124 (29%), Gaps = 13/124 (10%)

Query: 321 GRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIK 380
             Y+  +S             V          ++    +    G +  +  E+ +     
Sbjct: 1   ATYAAASSA-----------LVPRGSHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSAT 49

Query: 381 IHWYRNDRKLEENKIYRTQHDGNFYFIDL--SSVSLFDSGRWTCLAENAVGRSHCSCELS 438
           I W+R+ + L  +     +         L  +  S  D G + C A N +G+      L 
Sbjct: 50  ISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILV 109

Query: 439 VLVP 442
               
Sbjct: 110 QADT 113

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 62.5 bits (152), Expect = 5e-11
 Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 22/120 (18%)

Query: 418 GRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQ 477
             +   +   V R       S +       P     +     E   V++ C+V   P+  
Sbjct: 1   ATYAAASSALVPR------GSHMYA-----PKLQGPVAVYTWEGNQVNITCEVFAYPSAT 49

Query: 478 LIWYKDNKKIKAGDIFALT-ANPKDPSSL----------GTYTCEAVNCMGAAFSTSRVI 526
           + W++D + + + +   +   N    S L          G Y C AVN +G       ++
Sbjct: 50  ISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILV 109

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 58.7 bits (142), Expect = 9e-10
 Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 24/139 (17%)

Query: 107 GRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS--PTE 164
             Y+  +S             V          ++    +    G +  +  E+ +     
Sbjct: 1   ATYAAASSA-----------LVPRGSHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSAT 49

Query: 165 IKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNES 224
           I    D    +P S  +           +  N    + L +     +D G Y+ TA N  
Sbjct: 50  ISWFRD-GQLLPSSNYS---------NIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRI 99

Query: 225 GYSTAKFELSVESQVPDAP 243
           G  + +F L      P +P
Sbjct: 100 GQESLEFILVQAD-TPSSP 117

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 58.7 bits (142), Expect = 9e-10
 Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 24/139 (17%)

Query: 214 GRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS--PTE 271
             Y+  +S             V          ++    +    G +  +  E+ +     
Sbjct: 1   ATYAAASSA-----------LVPRGSHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSAT 49

Query: 272 IKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNES 331
           I    D    +P S  +           +  N    + L +     +D G Y+ TA N  
Sbjct: 50  ISWFRD-GQLLPSSNYS---------NIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRI 99

Query: 332 GYSTAKFELSVESQVPDAP 350
           G  + +F L      P +P
Sbjct: 100 GQESLEFILVQAD-TPSSP 117

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 52.9 bits (127), Expect = 9e-08
 Identities = 19/134 (14%), Positives = 38/134 (28%), Gaps = 29/134 (21%)

Query: 506 GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIG 565
            TY   +   +                         + +  P      ++    V    G
Sbjct: 1   ATYAAASSALVPRG----------------------SHMYAP-----KLQGPVAVYTWEG 33

Query: 566 TSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSI-EINYLEAVDDGEWK 624
               + C+V   P   +I W+    ++ +S+  +I        S  E+      D G + 
Sbjct: 34  NQVNITCEVFAYPSA-TISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYN 92

Query: 625 CVATSSSGVKQFSA 638
           C A +  G +    
Sbjct: 93  CTAVNRIGQESLEF 106

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 18/118 (15%), Positives = 31/118 (26%), Gaps = 18/118 (15%)

Query: 36  GTYTCEAVNCMGAAFSTSRVIARG--QQSFLDNDDVPFN-RAQGDHPI------------ 80
            TY   +   +           +G       + + V                        
Sbjct: 1   ATYAAASSALVPRGSHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLP 60

Query: 81  FGN--RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 136
             N    +  N    + L +     +D G Y+ TA N  G  + +F L      P +P
Sbjct: 61  SSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQAD-TPSSP 117

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 11/67 (16%)

Query: 1   MGIPTPQLIWYKDNKKIKAGDIFALT-ANPKDPSSL----------GTYTCEAVNCMGAA 49
              P+  + W++D + + + +   +   N    S L          G Y C AVN +G  
Sbjct: 43  FAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQE 102

Query: 50  FSTSRVI 56
                ++
Sbjct: 103 SLEFILV 109

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 70.4 bits (172), Expect = 7e-14
 Identities = 27/191 (14%), Positives = 58/191 (30%), Gaps = 23/191 (12%)

Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG--------------VVEASDKYHIMAD 603
             V   +G S  L  +         I W   E               +   + K     +
Sbjct: 6   LMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLN 65

Query: 604 GLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMT 663
               YS++++ L+  D G ++   ++ +  K  S     + + +  R  +     +    
Sbjct: 66  FTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSS---YTLRILRQLRNIQVTNHSQLFQN 122

Query: 664 DDGLVSFECKVV-GFPTPTLQWFKDNEELKPGDVYQL---TGTSSLGSYCCVAKNVMGKA 719
               +   C V       + +W      L       +      SS   Y C+A+N +   
Sbjct: 123 MTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRISSEQDYTCIAENAVS-- 180

Query: 720 ESSTQLTIEDI 730
             S  ++ + +
Sbjct: 181 NLSFSVSAQKL 191

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 19/117 (16%), Positives = 43/117 (36%), Gaps = 4/117 (3%)

Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNL 866
           L++  L++ D   ++   +      ++S    L + +  +  +     +   +    ++L
Sbjct: 72  LQLSNLKMEDTGSYRAQISTKTSAKLSS--YTLRILRQLRNIQVTNHSQLFQNMTCELHL 129

Query: 867 ECKVI-GVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSS 922
            C V       + +W   G  L +   +  +S +        YTC A N +   S S
Sbjct: 130 TCSVEDADDNVSFRWEALGNTLSSQP-NLTVSWDPRISSEQDYTCIAENAVSNLSFS 185

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 29/172 (16%), Positives = 53/172 (30%), Gaps = 22/172 (12%)

Query: 361 VKVGTRARLLVEIRSPTEIK-IHWYRNDRKL----------------EENKIYRTQHDGN 403
             +G    L +E  +  ++  I W  N+  L                   +  R     +
Sbjct: 10  GILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQS 69

Query: 404 FYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGT 463
            Y + LS++ + D+G +             S  L +L     +    T   +        
Sbjct: 70  -YSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQ--LRNIQVTNHSQLFQNMTCE 126

Query: 464 VSLECKVM-GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVN 514
           + L C V          W      + +     ++ +P+  SS   YTC A N
Sbjct: 127 LHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRI-SSEQDYTCIAEN 177

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 26/194 (13%), Positives = 56/194 (28%), Gaps = 19/194 (9%)

Query: 254 VKVGTRARLLVEIRSPTEIKC---QFDLNNTIPFSFRAQGDHPIF---GNRFRAINRDGR 307
             +G    L +E  +  ++      F+  +             I      + + +N    
Sbjct: 10  GILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQS 69

Query: 308 TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRA 367
             L +  ++ +D G Y    S ++    + + L +  Q+ +    +     +   +    
Sbjct: 70  YSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRN--IQVTNHSQLFQNMTCEL 127

Query: 368 RLLVEIRSPTE-IKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN 426
            L   +    + +   W      L          D            +     +TC+AEN
Sbjct: 128 HLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWD----------PRISSEQDYTCIAEN 177

Query: 427 AVGRSHCSCELSVL 440
           AV     S     L
Sbjct: 178 AVSNLSFSVSAQKL 191

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 67.4 bits (165), Expect = 9e-14
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 8/104 (7%)

Query: 344 SQVPDAPAFIRR---LHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQH 400
           S     P  I        +      R  L  E+    +    WY++ +K+EE+++   + 
Sbjct: 2   SSGSSGPVHILSPQDKVSLTFTTSERVVLTCELSRV-DFPATWYKDGQKVEESELLVVKM 60

Query: 401 DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKA 444
           DG  + + L    + DSG + C  E           ++V  P  
Sbjct: 61  DGRKHRLILPEAKVQDSGEFECRTEGV----SAFFGVTVQDPSG 100

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 65.9 bits (161), Expect = 3e-13
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 9/99 (9%)

Query: 748 APKFI---EGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGV 804
            P  I   +   S   T +E    T ++S   +   +W++D Q+V ES+ + +  +    
Sbjct: 7   GPVHILSPQDKVSLTFTTSERVVLTCELS-RVDFPATWYKDGQKVEESELLVVKMDG-RK 64

Query: 805 CHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPK 843
             L +   +V D  E++C              + +  P 
Sbjct: 65  HRLILPEAKVQDSGEFECRTEGVS----AFFGVTVQDPS 99

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 60.5 bits (147), Expect = 2e-11
 Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 24/107 (22%)

Query: 829 GQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELK 888
           G S +S       P H   P+    L         V L C++         W+KDG++++
Sbjct: 1   GSSGSSG------PVHILSPQDKVSLTFT--TSERVVLTCELSR-VDFPATWYKDGQKVE 51

Query: 889 AGDIHKIISGEDGTCCL----------GIYTCEAHNCMGTTSSSAAL 925
             ++  +   +     L          G + C         S+   +
Sbjct: 52  ESELLVVKM-DGRKHRLILPEAKVQDSGEFECRT----EGVSAFFGV 93

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 59.7 bits (145), Expect = 5e-11
 Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 13/102 (12%)

Query: 550 APIFI---KEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGL 605
            P+ I   ++  ++        +L C++    +P    WY K+G  VE S+   +  DG 
Sbjct: 7   GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP--ATWY-KDGQKVEESELLVVKMDG- 62

Query: 606 GGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPK 647
             + + +   +  D GE++C     S     +   V V  P 
Sbjct: 63  RKHRLILPEAKVQDSGEFECRTEGVS-----AFFGVTVQDPS 99

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 10/75 (13%), Positives = 26/75 (34%), Gaps = 18/75 (24%)

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL----------GSYCCVAKN 714
           V   C++         W+KD ++++  ++  +        L          G + C  + 
Sbjct: 28  VVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEG 86

Query: 715 VMGKAESSTQLTIED 729
                 +   +T++D
Sbjct: 87  ----VSAFFGVTVQD 97

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 15/85 (17%)

Query: 448 PFFTKELEAI---LTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSS 504
                  + +    T    V L C++         WYKD +K++  ++  +  +      
Sbjct: 9   VHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMD-GRKHR 66

Query: 505 L----------GTYTCEAVNCMGAA 519
           L          G + C         
Sbjct: 67  LILPEAKVQDSGEFECRTEGVSAFF 91

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 17/119 (14%), Positives = 26/119 (21%), Gaps = 24/119 (20%)

Query: 130 SQVPDAPAFIRR---LHDIAVKVGTRARLLVEIRSP-TEIKCQFDLNNTIPFSFRAQGDH 185
           S     P  I        +      R  L  E+           D               
Sbjct: 2   SSGSSGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFPATWYKD-------------GQ 48

Query: 186 PI-FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 243
            +             +  L +   +  D G +       S    A F ++V  Q P  P
Sbjct: 49  KVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVS----AFFGVTV--QDPSGP 101

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 17/119 (14%), Positives = 26/119 (21%), Gaps = 24/119 (20%)

Query: 237 SQVPDAPAFIRR---LHDIAVKVGTRARLLVEIRSP-TEIKCQFDLNNTIPFSFRAQGDH 292
           S     P  I        +      R  L  E+           D               
Sbjct: 2   SSGSSGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFPATWYKD-------------GQ 48

Query: 293 PI-FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 350
            +             +  L +   +  D G +       S    A F ++V  Q P  P
Sbjct: 49  KVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVS----AFFGVTV--QDPSGP 101

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 10/55 (18%), Positives = 16/55 (29%), Gaps = 6/55 (10%)

Query: 82  GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 136
                      +  L +   +  D G +       S    A F ++V  Q P  P
Sbjct: 53  SELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVS----AFFGVTV--QDPSGP 101

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 67.4 bits (165), Expect = 9e-14
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 8/93 (8%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLK 808
            K     +  QA        + +V+   + +V+W++D +++  S  V++         L 
Sbjct: 12  AKEQPAHREVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEAVG-CTRRLV 69

Query: 809 IHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
           +     A+  E+ C A             +L V
Sbjct: 70  VQQAGQAEAGEYSCEAGGQ------QLSFRLQV 96

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 63.6 bits (155), Expect = 2e-12
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL 409
                   ++  + G  A L  E+    + ++ WY++ +KL  +   R +  G    + +
Sbjct: 12  AKEQPAHREVQAEAGASATLSCEVAQA-QTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVV 70

Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
                 ++G ++C A    G    S  L V
Sbjct: 71  QQAGQAEAGEYSCEA----GGQQLSFRLQV 96

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 23/107 (21%)

Query: 829 GQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELK 888
           G S +S   K+   K     + ++        G +  L C+V    Q  + W+KDG++L 
Sbjct: 1   GSSGSSG--KVVFAKEQPAHREVQ-----AEAGASATLSCEV-AQAQTEVTWYKDGKKLS 52

Query: 889 AGDIHKIISGEDGTCCL----------GIYTCEAHNCMGTTSSSAAL 925
           +    ++ +    T  L          G Y+CEA    G    S  L
Sbjct: 53  SSSKVRVEA-VGCTRRLVVQQAGQAEAGEYSCEA----GGQQLSFRL 94

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 5/88 (5%)

Query: 546 PPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADG 604
                         V+A+ G SA L C+V        + WY K+G  + +S K  + A G
Sbjct: 7   GKVVFAKEQPAHREVQAEAGASATLSCEVAQAQ-T-EVTWY-KDGKKLSSSSKVRVEAVG 63

Query: 605 LGGYSIEINYLEAVDDGEWKCVATSSSG 632
                + +      + GE+ C A     
Sbjct: 64  -CTRRLVVQQAGQAEAGEYSCEAGGQQL 90

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 19/92 (20%)

Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT---GTSSL-- 705
            +   + + V  + G   +  C+V       + W+KD ++L      ++     T  L  
Sbjct: 12  AKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVV 70

Query: 706 --------GSYCCVAKNVMGKAESSTQLTIED 729
                   G Y C A    G  + S +L +  
Sbjct: 71  QQAGQAEAGEYSCEA----GGQQLSFRLQVAG 98

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 47.8 bits (114), Expect = 7e-07
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 19/101 (18%)

Query: 429 GRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKI 487
           G S  S ++                   +  E G + +L C+V      ++ WYKD KK+
Sbjct: 1   GSSGSSGKVVF--------AKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKL 51

Query: 488 KAGDIFALTANPK---------DPSSLGTYTCEAVNCMGAA 519
            +     + A              +  G Y+CEA     + 
Sbjct: 52  SSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQLSF 92

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 19/105 (18%)

Query: 136 PAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNRFR 193
                   ++  + G  A L  E+     E+    D                +   ++ R
Sbjct: 12  AKEQPAHREVQAEAGASATLSCEVAQAQTEVTWYKD-------------GKKLSSSSKVR 58

Query: 194 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 238
                    L +++  + + G YS  A  +       F L V  Q
Sbjct: 59  VEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQ----LSFRLQVAGQ 99

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 19/105 (18%)

Query: 243 PAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPIF-GNRFR 300
                   ++  + G  A L  E+     E+    D                +   ++ R
Sbjct: 12  AKEQPAHREVQAEAGASATLSCEVAQAQTEVTWYKD-------------GKKLSSSSKVR 58

Query: 301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
                    L +++  + + G YS  A  +       F L V  Q
Sbjct: 59  VEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQ----LSFRLQVAGQ 99

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 67.5 bits (165), Expect = 1e-13
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 17/97 (17%)

Query: 847 KPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGD-------------- 891
            P+ +E     ++S+G    L CK  G P PT++W+K G  ++                 
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 892 --IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALL 926
               +I+ G       G+Y C A N +G   S  A L
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASL 105

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 64.4 bits (157), Expect = 1e-12
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 17/94 (18%)

Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGD-------------- 491
            P   +    ++  +G   +L CK  G PTP + WYK  ++++                 
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 492 --IFALTANPKDPSSLGTYTCEAVNCMGAAFSTS 523
                +    K     G Y C A N +G A S  
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHD 102

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 57.5 bits (139), Expect = 4e-10
 Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 22/99 (22%)

Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDV-----YQLTGTSS 704
            PR VE    ++   G   +  CK  G PTPT++W+K  E ++           L  + S
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 705 L---------------GSYCCVAKNVMGKAESST-QLTI 727
           L               G Y CVA+N +G+A S    L +
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 10/108 (9%)

Query: 343 ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQH-- 400
           +   P  P  +    D+ V  G  A L  +        I WY+   ++E +K     H  
Sbjct: 5   QEDFP--PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM 62

Query: 401 ---DGNFYF--IDLSSVSLFDSGRWTCLAENAVGRSH-CSCELSVLVP 442
               G+ +F  I     S  D G + C+A N +G +      L V   
Sbjct: 63  LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAA 110

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 53.3 bits (128), Expect = 1e-08
 Identities = 17/113 (15%), Positives = 41/113 (36%), Gaps = 7/113 (6%)

Query: 742 LLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDN-----VK 796
           L   +  P+ +E       +  E      +    P P + W++  ++V    +       
Sbjct: 3   LRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM 62

Query: 797 ILKE-TLGVCHLKIHALEVADQAEWKCIATNDFGQSIT-SCFLKLNVPKHYKK 847
           +L   +L    +        D+  + C+A N  G++++    L++    H+  
Sbjct: 63  LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHH 115

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 46.0 bits (109), Expect = 4e-06
 Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 16/68 (23%)

Query: 2   GIPTPQLIWYKDNKKIKAGD----------------IFALTANPKDPSSLGTYTCEAVNC 45
           G PTP + WYK  ++++                      +    K     G Y C A N 
Sbjct: 35  GRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNY 94

Query: 46  MGAAFSTS 53
           +G A S  
Sbjct: 95  LGEAVSHD 102

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 25/113 (22%), Positives = 37/113 (32%), Gaps = 14/113 (12%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDK------YHIMAD 603
            P  ++   ++    G  A L C+    P P  I WY K G    +DK        ++  
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPT-IEWY-KGGERVETDKDDPRSHRMLLPS 66

Query: 604 G-LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFV 655
           G L    I        D+G + CVA +  G      A + V            
Sbjct: 67  GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAA-----AHHH 114

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 67.4 bits (165), Expect = 1e-13
 Identities = 16/93 (17%), Positives = 26/93 (27%), Gaps = 16/93 (17%)

Query: 847 KPKFLEELK----AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGT 902
            PK           +   G  +NL     G P+P + W K G  L    +H  +   D  
Sbjct: 21  PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVH--VRTSDFD 78

Query: 903 CCL----------GIYTCEAHNCMGTTSSSAAL 925
                        G Y           +++  +
Sbjct: 79  TVFFVRQAARSDSGEYELSVQIENMKDTATIRI 111

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 62.8 bits (153), Expect = 6e-12
 Identities = 24/128 (18%), Positives = 41/128 (32%), Gaps = 21/128 (16%)

Query: 113 ASNESGYSTAKFELSVESQVPDAPAFIRRLH---DIAVKVGTRARLLVEIR-SPT-EIKC 167
           +S  SG       +     + + P      H       KVG +  L+V  +  P  ++  
Sbjct: 2   SSGSSGTLAQPVTIRE---IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVW 58

Query: 168 QFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS 227
                             P+  +R      D  T   +R+  R D G Y ++   E+   
Sbjct: 59  TKG-------------GAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKD 105

Query: 228 TAKFELSV 235
           TA   + V
Sbjct: 106 TATIRIRV 113

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 62.8 bits (153), Expect = 6e-12
 Identities = 24/128 (18%), Positives = 41/128 (32%), Gaps = 21/128 (16%)

Query: 220 ASNESGYSTAKFELSVESQVPDAPAFIRRLH---DIAVKVGTRARLLVEIR-SPT-EIKC 274
           +S  SG       +     + + P      H       KVG +  L+V  +  P  ++  
Sbjct: 2   SSGSSGTLAQPVTIRE---IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVW 58

Query: 275 QFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS 334
                             P+  +R      D  T   +R+  R D G Y ++   E+   
Sbjct: 59  TKG-------------GAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKD 105

Query: 335 TAKFELSV 342
           TA   + V
Sbjct: 106 TATIRIRV 113

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 60.9 bits (148), Expect = 2e-11
 Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 12/74 (16%)

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT--GTSSL----------GSYCCVAKNV 715
           ++      G P P + W K    L    V+  T    +            G Y    +  
Sbjct: 42  LNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIE 101

Query: 716 MGKAESSTQLTIED 729
             K  ++ ++ + +
Sbjct: 102 NMKDTATIRIRVVE 115

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 59.3 bits (144), Expect = 9e-11
 Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 9/120 (7%)

Query: 327 ASNESGYSTAKFELSVESQVPDAPAFIRRLH---DIAVKVGTRARLLVEIR-SPTEIKIH 382
           +S  SG       +     + + P      H       KVG +  L+V  +  P   ++ 
Sbjct: 2   SSGSSGTLAQPVTIRE---IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPR-PQVV 57

Query: 383 WYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
           W +    L+ ++++    D +     +   +  DSG +    +    +   +  + V+  
Sbjct: 58  WTKGGAPLDTSRVHVRTSDFD-TVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEK 116

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 57.0 bits (138), Expect = 6e-10
 Identities = 14/53 (26%), Positives = 22/53 (41%)

Query: 76  GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
           G  P+  +R      D  T   +R+  R D G Y ++   E+   TA   + V
Sbjct: 61  GGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV 113

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 12/94 (12%), Positives = 32/94 (34%), Gaps = 5/94 (5%)

Query: 748 APKFI---EGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGV 804
            PK        ++    V E+    V     P P+V W +     +++  V + + +   
Sbjct: 21  PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAP-LDTSRVHV-RTSDFD 78

Query: 805 CHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
               +     +D  E++     +  +   +  ++
Sbjct: 79  TVFFVRQAARSDSGEYELSVQIENMKDTATIRIR 112

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 54.3 bits (131), Expect = 5e-09
 Identities = 15/110 (13%), Positives = 30/110 (27%), Gaps = 16/110 (14%)

Query: 431 SHCSCELSVLVPKAYKAPFFTKELE---AILTEQG-TVSLECKVMGIPTPQLIWYKDNKK 486
           S  +    V + +  + P            + + G  ++L     G P PQ++W K    
Sbjct: 5   SSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAP 64

Query: 487 IKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFSTSRVI 526
           +    +          +            G Y            +T R+ 
Sbjct: 65  LDTSRVH--VRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIR 112

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 10/65 (15%), Positives = 17/65 (26%), Gaps = 12/65 (18%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------GTYTCEAVNCMGAAFS 51
           G P PQ++W K    +    +          +            G Y            +
Sbjct: 50  GKPRPQVVWTKGGAPLDTSRVH--VRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTA 107

Query: 52  TSRVI 56
           T R+ 
Sbjct: 108 TIRIR 112

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 69.6 bits (170), Expect = 2e-13
 Identities = 38/202 (18%), Positives = 68/202 (33%), Gaps = 34/202 (16%)

Query: 557 VENVKAKIGTSAILECQVLVPPWPRS---IYWYN--------KEGVVEASDKYH--IMAD 603
           V +V  ++   A L C   V     +   IYW            G +    +Y    + D
Sbjct: 1   VIHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD 60

Query: 604 GLGGYSIEINYLEAVDDGEWKCVATS--SSGVKQFSAAYVHVLMPKNYRKPRFVESLKAV 661
                SI I  L   D+G ++CV         K+   A V + +  ++  P   +     
Sbjct: 61  ITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDF---E 117

Query: 662 MTDDGLVSFECKVVG-FPTPTLQWFKDNEELKP----------GDVYQLTGT-----SSL 705
           +    +    C   G FP P L W ++ EEL             ++Y ++       ++ 
Sbjct: 118 IPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTN 177

Query: 706 GSYCCVAKNVMGKAESSTQLTI 727
            S+ C+ K    +   +     
Sbjct: 178 HSFMCLIKYGHLRVNQTFNWNT 199

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 59.6 bits (144), Expect = 4e-10
 Identities = 24/173 (13%), Positives = 52/173 (30%), Gaps = 28/173 (16%)

Query: 767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKE----------TLGVCHLKIHALEVAD 816
              V V    + ++ W ++ + V+   +  +                   + I AL  +D
Sbjct: 17  GHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSD 76

Query: 817 QAEWKCIATNDFGQS---ITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGV 873
           +  ++C+       +        + L+V   +  P   +     +       + C   G 
Sbjct: 77  EGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDF---EIPTSNIRRIICSTSGG 133

Query: 874 -PQPTLKWFKDGRELKAGDIHKIISGEDGTCCL-----------GIYTCEAHN 914
            P+P L W ++G EL A +       E     +             + C    
Sbjct: 134 FPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKY 186

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 56.9 bits (137), Expect = 4e-09
 Identities = 24/188 (12%), Positives = 59/188 (31%), Gaps = 31/188 (16%)

Query: 356 LHDIAVKVGTRARL----LVEIRSPTEIKIHWYRNDR----------KLEENKIYRTQHD 401
           +  +  +V   A L     V +    + +I+W +  +           +      RT  D
Sbjct: 1   VIHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD 60

Query: 402 --GNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILT 459
              N   I + ++   D G + C+       +     L+ +              +  + 
Sbjct: 61  ITNNLS-IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIP 119

Query: 460 EQGTVSLECKVMGI-PTPQLIWYKDNKKIKAGDIFALTANPKD------------PSSLG 506
                 + C   G  P P L W ++ +++ A +   ++ +P+              ++  
Sbjct: 120 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINT-TVSQDPETELYAVSSKLDFNMTTNH 178

Query: 507 TYTCEAVN 514
           ++ C    
Sbjct: 179 SFMCLIKY 186

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 44.6 bits (105), Expect = 5e-05
 Identities = 31/189 (16%), Positives = 54/189 (28%), Gaps = 14/189 (7%)

Query: 249 LHDIAVKVGTRARL------LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAI 302
           +  +  +V   A L       VE  + T I  Q +    +          P + NR    
Sbjct: 1   VIHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTI-F 59

Query: 303 NRDGRTELNIRRVRRDDGGRYS-VTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAV 361
           +      + I  +R  D G Y  V    E      +    V   V         + D  +
Sbjct: 60  DITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTP-SISDFEI 118

Query: 362 KVGTRARLLVEIR--SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDS-- 417
                 R++       P E  + W  N  +L       +Q      +   S +    +  
Sbjct: 119 PTSNIRRIICSTSGGFP-EPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTN 177

Query: 418 GRWTCLAEN 426
             + CL + 
Sbjct: 178 HSFMCLIKY 186

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 66.3 bits (162), Expect = 2e-13
 Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 15/88 (17%)

Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISG-------- 898
                E+++  +  G  + L C++      ++ W +DG +L   +  +I           
Sbjct: 4   GSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSV 62

Query: 899 -EDGTCCLGIYTCEAHNCMGTTSSSAAL 925
             D     G+Y C   +  G+ ++  ++
Sbjct: 63  PADS----GLYACVTSSPSGSDTTYFSV 86

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 64.0 bits (156), Expect = 1e-12
 Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 13/89 (14%)

Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----- 705
                 +++ +   G L+   C++      ++ W +D  +L   +  ++TG   +     
Sbjct: 4   GSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITG-EEVEVQDS 61

Query: 706 -----GSYCCVAKNVMGKAESSTQLTIED 729
                G Y CV  +  G   +   + + D
Sbjct: 62  VPADSGLYACVTSSPSGSDTTYFSVNVSD 90

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
            + +    +    V  G   +L   +R      I+W R+  +L E+   RT+  G    +
Sbjct: 2   SSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESN--RTRITGEE--V 56

Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
           ++      DSG + C+  +  G       ++V
Sbjct: 57  EVQDSVPADSGLYACVTSSPSGSDTTYFSVNV 88

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 58.9 bits (143), Expect = 7e-11
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 13/89 (14%)

Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALT--------A 497
           +     E+E+ L   G  + L C++       + W +D  ++   +   +T        +
Sbjct: 3   SGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDS 61

Query: 498 NPKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
            P D    G Y C   +  G+  +   V 
Sbjct: 62  VPADS---GLYACVTSSPSGSDTTYFSVN 87

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 58.9 bits (143), Expect = 7e-11
 Identities = 15/94 (15%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
           +      ++S      +  +   ++       ++W RD  Q+ ES+  +I  E      +
Sbjct: 3   SGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEE-----V 56

Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
           ++     AD   + C+ ++  G    + +  +NV
Sbjct: 57  EVQDSVPADSGLYACVTSSPSGS--DTTYFSVNV 88

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 9/92 (9%)

Query: 548 GPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLG 606
           G +     EVE+     G    L C++       SI W  ++GV +  S++  I  + + 
Sbjct: 1   GSSGSSGVEVESFLVHPGDLLQLRCRLRDDV-Q-SINWL-RDGVQLAESNRTRITGEEV- 56

Query: 607 GYSIEINYLEAVDDGEWKCVATSSSGVKQFSA 638
               E+      D G + CV +S SG      
Sbjct: 57  ----EVQDSVPADSGLYACVTSSPSGSDTTYF 84

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 21/122 (17%), Positives = 36/122 (29%), Gaps = 37/122 (30%)

Query: 134 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF----- 188
            + +    +    V  G   +L          +C            R + D         
Sbjct: 2   SSGSSGVEVESFLVHPGDLLQL----------RC------------RLRDDVQSINWLRD 39

Query: 189 ------GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 242
                  NR R        E+ ++     D G Y+   S+ SG  T  F ++V   +P  
Sbjct: 40  GVQLAESNRTRITGE----EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSG 95

Query: 243 PA 244
           P+
Sbjct: 96  PS 97

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 21/122 (17%), Positives = 36/122 (29%), Gaps = 37/122 (30%)

Query: 241 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF----- 295
            + +    +    V  G   +L          +C            R + D         
Sbjct: 2   SSGSSGVEVESFLVHPGDLLQL----------RC------------RLRDDVQSINWLRD 39

Query: 296 ------GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 349
                  NR R        E+ ++     D G Y+   S+ SG  T  F ++V   +P  
Sbjct: 40  GVQLAESNRTRITGE----EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSG 95

Query: 350 PA 351
           P+
Sbjct: 96  PS 97

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 82  GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPA 137
            NR R        E+ ++     D G Y+   S+ SG  T  F ++V   +P  P+
Sbjct: 46  SNRTRITGE----EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSGPS 97

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 11/61 (18%)

Query: 4  PTPQLIWYKDNKKIKAGDIFALT--------ANPKDPSSLGTYTCEAVNCMGAAFSTSRV 55
              + W +D  ++   +   +T        + P D    G Y C   +  G+  +   V
Sbjct: 30 DVQSINWLRDGVQLAESNRTRITGEEVEVQDSVPADS---GLYACVTSSPSGSDTTYFSV 86

Query: 56 I 56
           
Sbjct: 87 N 87

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 68.4 bits (167), Expect = 2e-13
 Identities = 31/184 (16%), Positives = 53/184 (28%), Gaps = 26/184 (14%)

Query: 346 VPDAPAFIRRLHDIAVKVGTRARLLVEI-RSPTEIKIHWYRNDRKLEENKIYRTQHDGNF 404
           VP  P          +  G    L              W+ N    EE        + + 
Sbjct: 1   VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE-------TNSSL 53

Query: 405 YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTV 464
                 +    DSG + C  +        S  + + V   +      +    ++ E   +
Sbjct: 54  NI---VNAKFEDSGEYKCQHQQVNE----SEPVYLEV---FSDWLLLQASAEVVMEGQPL 103

Query: 465 SLECKV-MGIPTPQLIWYKDNKKIKA---GDIFALT-ANPKDPSSLGTYTCEAVNCMGAA 519
            L C         ++I+YKD + +K        ++T A  +D    GTY C         
Sbjct: 104 FLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDS---GTYYCTGKVWQLDY 160

Query: 520 FSTS 523
            S  
Sbjct: 161 ESEP 164

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 66.1 bits (161), Expect = 2e-12
 Identities = 32/167 (19%), Positives = 49/167 (29%), Gaps = 31/167 (18%)

Query: 768 FTVQVSISPEP-KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
            T   +   E     WF +     E+++            L I   +  D  E+KC    
Sbjct: 24  LTCNGNNFFEVSSTKWFHNGSLSEETNS-----------SLNIVNAKFEDSGEYKCQHQQ 72

Query: 827 DFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVI-GVPQPTLKWFKDGR 885
                  S  + L V   +     L+    V+ EG  + L C          + ++KDG 
Sbjct: 73  ----VNESEPVYLEV---FSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGE 125

Query: 886 ELKAGD------IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALL 926
            LK         I    + ED     G Y C          S    +
Sbjct: 126 ALKYWYENHNISITNA-TVEDS----GTYYCTGKVWQLDYESEPLNI 167

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 63.0 bits (153), Expect = 2e-11
 Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 26/186 (13%)

Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGY 608
             P         +   G +  L C         S  W++   + E ++            
Sbjct: 3   QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNS----------- 51

Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLV 668
           S+ I   +  D GE+KC     +     S   V++ +   +     +++   V+ +   +
Sbjct: 52  SLNIVNAKFEDSGEYKCQHQQVN----ESEP-VYLEV---FSDWLLLQASAEVVMEGQPL 103

Query: 669 SFECKV-VGFPTPTLQWFKDNEELKP---GDVYQLTGTSSL--GSYCCVAKNVMGKAESS 722
              C     +    + ++KD E LK         +T  +    G+Y C  K      ES 
Sbjct: 104 FLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESE 163

Query: 723 T-QLTI 727
              +T+
Sbjct: 164 PLNITV 169

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 60.3 bits (146), Expect = 1e-10
 Identities = 23/187 (12%), Positives = 44/187 (23%), Gaps = 38/187 (20%)

Query: 463 TVSLECKVMGIPTPQLI-WYKDNKKIK--AGDIFALTANPKDPSSLGTYTCEAVNCMGAA 519
            V+L C            W+ +    +     +  + A  +D    G Y C+        
Sbjct: 21  NVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKFEDS---GEYKCQHQQ---VN 74

Query: 520 FSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPW 579
            S                  P    +        + +        G    L C       
Sbjct: 75  ESE-----------------PVYLEVFSDW---LLLQASAEVVMEGQPLFLRCHGWRNWD 114

Query: 580 PRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAA 639
              + +Y K+G          +      ++I I      D G + C         +    
Sbjct: 115 VYKVIYY-KDGE--------ALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPL 165

Query: 640 YVHVLMP 646
            + V+  
Sbjct: 166 NITVIKA 172

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 59.1 bits (143), Expect = 4e-10
 Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 23/150 (15%)

Query: 304 RDGRT------ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 357
            +G         LNI   + +D G Y          S       V  +V      + +  
Sbjct: 41  HNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQ-VNESEP-----VYLEVFSDW-LLLQAS 93

Query: 358 DIAVKVGTRARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFD 416
              V  G    L           K+ +Y++   L      +  ++ +   I  ++ ++ D
Sbjct: 94  AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEAL------KYWYENHNISI--TNATVED 145

Query: 417 SGRWTCLAENAVGRSHCSCELSVLVPKAYK 446
           SG + C  +      + S  L++ V KA +
Sbjct: 146 SGTYYCTGKVWQL-DYESEPLNITVIKAPR 174

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 50.3 bits (120), Expect = 4e-07
 Identities = 16/142 (11%), Positives = 40/142 (28%), Gaps = 22/142 (15%)

Query: 4   PTPQLIWYKDNKKIK--AGDIFALTANPKDPSSLGTYTCEAVNCMG------AAFSTSRV 55
                 W+ +    +     +  + A  +D    G Y C+              FS   +
Sbjct: 33  EVSSTKWFHNGSLSEETNSSLNIVNAKFEDS---GEYKCQHQQVNESEPVYLEVFSDWLL 89

Query: 56  IARGQQSFLDNDDVPFN-RAQGDHPIF-------GNRFRAINRDGRTELNIRRVRRDDGG 107
           +    +  ++   +        +  ++       G   +    +    ++I     +D G
Sbjct: 90  LQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENH--NISITNATVEDSG 147

Query: 108 RYSVTASNESG-YSTAKFELSV 128
            Y  T       Y +    ++V
Sbjct: 148 TYYCTGKVWQLDYESEPLNITV 169

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 22/154 (14%), Positives = 38/154 (24%), Gaps = 33/154 (21%)

Query: 90  RDGRT------ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 143
            +G         LNI   + +D G Y          S       V  +V      + +  
Sbjct: 41  HNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQ-VNESEP-----VYLEVFSDW-LLLQAS 93

Query: 144 DIAVKVGTRARLLVEIRS-PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE 202
              V  G    L           K  +  +                G   +    +    
Sbjct: 94  AEVVMEGQPLFLRCHGWRNWDVYKVIYYKD----------------GEALKYWYENH--N 135

Query: 203 LNIRRVRRDDGGRYSVTASNESG-YSTAKFELSV 235
           ++I     +D G Y  T       Y +    ++V
Sbjct: 136 ISITNATVEDSGTYYCTGKVWQLDYESEPLNITV 169

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 22/154 (14%), Positives = 38/154 (24%), Gaps = 33/154 (21%)

Query: 197 RDGRT------ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH 250
            +G         LNI   + +D G Y          S       V  +V      + +  
Sbjct: 41  HNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQ-VNESEP-----VYLEVFSDW-LLLQAS 93

Query: 251 DIAVKVGTRARLLVEIRS-PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE 309
              V  G    L           K  +  +                G   +    +    
Sbjct: 94  AEVVMEGQPLFLRCHGWRNWDVYKVIYYKD----------------GEALKYWYENH--N 135

Query: 310 LNIRRVRRDDGGRYSVTASNESG-YSTAKFELSV 342
           ++I     +D G Y  T       Y +    ++V
Sbjct: 136 ISITNATVEDSGTYYCTGKVWQLDYESEPLNITV 169

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 10/60 (16%)

Query: 860 EGGAVNLECKVIGVPQP-TLKWFKDGRELKAGD----IHKIISGEDGTCCLGIYTCEAHN 914
           +G  V L C      +  + KWF +G   +  +    I      ED     G Y C+   
Sbjct: 18  KGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVN-AKFEDS----GEYKCQHQQ 72

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 68.0 bits (166), Expect = 3e-13
 Identities = 31/167 (18%), Positives = 54/167 (32%), Gaps = 31/167 (18%)

Query: 768 FTVQVSISPEP-KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN 826
              Q + SPE     WF ++  +    +              I A  V D  E++C    
Sbjct: 27  LKCQGAYSPEDNSTQWFHNESLISSQAS-----------SYFIDAATVNDSGEYRCQTNL 75

Query: 827 DFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVI-GVPQPTLKWFKDGR 885
               S  S  ++L V   +     L+  + V  E   ++L C          + + ++G+
Sbjct: 76  ----STLSDPVQLEV---HIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGK 128

Query: 886 ELKAGD------IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALL 926
           + K         I K  + +D     G Y C         SS    +
Sbjct: 129 DRKYFHHNSDFHIPKA-TLKDS----GSYFCRGLVGSKNVSSETVNI 170

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 66.0 bits (161), Expect = 1e-12
 Identities = 24/157 (15%), Positives = 51/157 (32%), Gaps = 25/157 (15%)

Query: 375 SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCS 434
           SP +    W+ N+  +            +++   + + ++ DSG + C    +       
Sbjct: 34  SPEDNSTQWFHNESLISSQ-------ASSYF---IDAATVNDSGEYRCQTNLSTLSD--P 81

Query: 435 CELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKV-MGIPTPQLIWYKDNKKIKA---- 489
            +L V +          +    +  E+  + L C         ++ + ++ K  K     
Sbjct: 82  VQLEVHIG-----WLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHN 136

Query: 490 GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
            D     A  KD    G+Y C  +       S +  I
Sbjct: 137 SDFHIPKATLKDS---GSYFCRGLVGSKNVSSETVNI 170

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 61.8 bits (150), Expect = 5e-11
 Identities = 29/186 (15%), Positives = 60/186 (32%), Gaps = 28/186 (15%)

Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGY 608
           P  +   E +        S  L+CQ    P   S  W++ E ++ +              
Sbjct: 6   PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS----------- 54

Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFS-AAYVHVLMPKNYRKPRFVESLKAVMTDDGL 667
           S  I+     D GE++C    S+     S    + V +         +++ + V  ++  
Sbjct: 55  SYFIDAATVNDSGEYRCQTNLST----LSDPVQLEVHIG-----WLLLQAPRWVFKEEDP 105

Query: 668 VSFECKV-VGFPTPTLQWFKDNEELKP---GDVYQLTGTSSL--GSYCCVAKNVMGKAES 721
           +   C          + + ++ ++ K       + +   +    GSY C          S
Sbjct: 106 IHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKN-VS 164

Query: 722 STQLTI 727
           S  + I
Sbjct: 165 SETVNI 170

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 52.2 bits (125), Expect = 9e-08
 Identities = 18/134 (13%), Positives = 40/134 (29%), Gaps = 17/134 (12%)

Query: 309 ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRAR 368
              I     +D G Y    +  +          V+ +V      ++    +  K      
Sbjct: 55  SYFIDAATVNDSGEYRCQTNLSTLSD------PVQLEVHIGWLLLQAPRWV-FKEEDPIH 107

Query: 369 LLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA 427
           L           K+ + +N +        +  H  + + I     +L DSG + C     
Sbjct: 108 LRCHSWKNTALHKVTYLQNGKDR------KYFHHNSDFHI--PKATLKDSGSYFCRGLVG 159

Query: 428 VGRSHCSCELSVLV 441
              +  S  +++ +
Sbjct: 160 SK-NVSSETVNITI 172

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 49.9 bits (119), Expect = 6e-07
 Identities = 22/182 (12%), Positives = 44/182 (24%), Gaps = 34/182 (18%)

Query: 463 TVSLECKVMGIPTPQLI-WYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFS 521
           +V+L+C+    P      W+ +   I      +   +    +  G Y C+      +  S
Sbjct: 24  SVTLKCQGAYSPEDNSTQWFHNESLIS-SQASSYFIDAATVNDSGEYRCQTNL---STLS 79

Query: 522 TSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPR 581
               +           +V    L+   P  +F +              L C         
Sbjct: 80  DPVQL-----------EVHIGWLLLQAPRWVFKE---------EDPIHLRCHSWKNTALH 119

Query: 582 SIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYV 641
            + +  + G                     I      D G + C     S         +
Sbjct: 120 KVTYL-QNG--------KDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNI 170

Query: 642 HV 643
            +
Sbjct: 171 TI 172

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 16/145 (11%), Positives = 42/145 (28%), Gaps = 27/145 (18%)

Query: 4   PTPQLI-WYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTS--------- 53
           P      W+ +   I      +   +    +  G Y C+      +  S           
Sbjct: 35  PEDNSTQWFHNESLIS-SQASSYFIDAATVNDSGEYRCQTNL---STLSDPVQLEVHIGW 90

Query: 54  RVIARGQQSFLDNDDVPFN-RAQGDHPIFGNRFRAINRDGRT--------ELNIRRVRRD 104
            ++   +  F + D +     +  +  +    +    ++G+         + +I +    
Sbjct: 91  LLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYL---QNGKDRKYFHHNSDFHIPKATLK 147

Query: 105 DGGRYSVTASNESG-YSTAKFELSV 128
           D G Y       S   S+    +++
Sbjct: 148 DSGSYFCRGLVGSKNVSSETVNITI 172

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 19/84 (22%)

Query: 855 KAVLS---------EGGAVNLECKVIGVPQP-TLKWFKDGRELKA-GDIHKI--ISGEDG 901
           KAV+          E  +V L+C+    P+  + +WF +   + +    + I   +  D 
Sbjct: 7   KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVNDS 66

Query: 902 TCCLGIYTCEAHNCMGTTSSSAAL 925
               G Y C+ +    T S    L
Sbjct: 67  ----GEYRCQTNL--STLSDPVQL 84

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 67.6 bits (164), Expect = 2e-12
 Identities = 37/240 (15%), Positives = 73/240 (30%), Gaps = 47/240 (19%)

Query: 243 PAFIRRLHDIAVKVGTRARL-----LVEIRSPTEI--KCQFDLNNTIPFSFRAQGDHPIF 295
           P        + V VG    +       E +    +      D ++   +      +  + 
Sbjct: 6   PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65

Query: 296 GNRFRA-INRDGRTE-----LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 349
             RF+   +  G T      L ++ V++ D G Y+     ++     K  + +   +P+ 
Sbjct: 66  TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVEL-WVLPEE 124

Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRS---PTEIKIHWYRNDRKLEENKIYRTQHDGNFYF 406
           P  +R      V+VG   ++   I+S       K++W  +     E +   +        
Sbjct: 125 PRDLR------VRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSG 178

Query: 407 ------------------------IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
                                   I L +V   D G +TC        S  +  L V+  
Sbjct: 179 KFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQD 238

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 63.7 bits (154), Expect = 4e-11
 Identities = 21/238 (8%), Positives = 49/238 (20%), Gaps = 69/238 (28%)

Query: 551 PIFIKEVENVKAKIGTSAILECQV--LVPPWPRSIYWYNKEGVVEASDKYHIMADG---- 604
           P        ++  +G S ++ C V          + W   +   +AS+            
Sbjct: 6   PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65

Query: 605 ---------------LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNY 649
                              S+ +  ++  D+G + C     +         V + +    
Sbjct: 66  TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKP-VELWVLPEE 124

Query: 650 RKPRFVESLKAVMTDDGLVSFECKVVGFPTP---TLQWFKDNEELKPGDVYQL------- 699
            +   V                C +          + W   +      +           
Sbjct: 125 PRDLRVRV-------GDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRS 177

Query: 700 --------------------TGTSSL----------GSYCCVAKNVMGKAESSTQLTI 727
                                   S+          G Y C       ++  +  L +
Sbjct: 178 GKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHV 235

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 63.7 bits (154), Expect = 5e-11
 Identities = 35/242 (14%), Positives = 75/242 (30%), Gaps = 37/242 (15%)

Query: 136 PAFIRRLHDIAVKVGTRARL-----LVEIRSPTEI--KCQFDLNNTIPFSFRAQGDHPIF 188
           P        + V VG    +       E +    +      D ++   +      +  + 
Sbjct: 6   PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65

Query: 189 GNRFRA-INRDGRTE-----LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 242
             RF+   +  G T      L ++ V++ D G Y+     ++     K  + +   +P+ 
Sbjct: 66  TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVEL-WVLPEE 124

Query: 243 PAFIRRLHDIAVKVGTRARL-----------LVEI----RSPTEIKCQFDLNNTIPFSFR 287
           P  +R      V+VG   ++           + ++     S +  + +  L+        
Sbjct: 125 PRDLR------VRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSG 178

Query: 288 AQGDHPIFGNRFRAINRDGRTE--LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 345
                  F NR        R +  + ++ V+  D G Y+ +       S     L V   
Sbjct: 179 KFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQD 238

Query: 346 VP 347
             
Sbjct: 239 EF 240

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 60.3 bits (145), Expect = 7e-10
 Identities = 33/195 (16%), Positives = 66/195 (33%), Gaps = 29/195 (14%)

Query: 63  FLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTA 122
           +  N  VP  R Q    + G+     + DG   L ++ V++ D G Y+     ++     
Sbjct: 58  YYSNLSVPTGRFQNRSHLVGD---TFHNDG--SLLLQDVQKADEGIYTCEIRLKNESMVM 112

Query: 123 KFELSVESQVPDAPAFIRRLHDIAVKVGTRARL-----------LVEI----RSPTEIKC 167
           K  + +   +P+ P  +R      V+VG   ++           + ++     S +  + 
Sbjct: 113 KKPVEL-WVLPEEPRDLR------VRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEE 165

Query: 168 QFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE--LNIRRVRRDDGGRYSVTASNESG 225
           +  L+               F NR        R +  + ++ V+  D G Y+ +      
Sbjct: 166 ETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKL 225

Query: 226 YSTAKFELSVESQVP 240
            S     L V     
Sbjct: 226 ESRKTIVLHVVQDEF 240

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 58.0 bits (139), Expect = 4e-09
 Identities = 24/235 (10%), Positives = 51/235 (21%), Gaps = 66/235 (28%)

Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPT---EIKIHWYRNDRKLEENKIYRTQHDGNFYF 406
           P        + V VG    +   ++        ++ W  +  K + ++     +      
Sbjct: 6   PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65

Query: 407 --------------------IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYK 446
                               + L  V   D G +TC              + + V     
Sbjct: 66  TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL---- 121

Query: 447 APFFTKELEAILTEQGTVSLECKVMGIPTPQLI---WYKDNKKIKAGDIFALTANPKDPS 503
            P   ++L        T  + C +      ++    W   +      +      +     
Sbjct: 122 -PEEPRDLRV--RVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSG 178

Query: 504 -----------------------SL----------GTYTCEAVNCMGAAFSTSRV 525
                                  S+          G YTC        +  T  +
Sbjct: 179 KFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVL 233

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 55.6 bits (133), Expect = 2e-08
 Identities = 24/206 (11%), Positives = 47/206 (22%), Gaps = 62/206 (30%)

Query: 775 SPEPKVSWFRDDQQVVESDNVKILKE-------------------TLGVCHLKIHALEVA 815
               +V W     +   S+ V                              L +  ++ A
Sbjct: 35  KHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKA 94

Query: 816 DQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQ 875
           D+  + C         +    ++L V     +   +         G    + C +    +
Sbjct: 95  DEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVR-------VGDTTQMRCSIQSTEE 147

Query: 876 P---TLKWFKDGRELKAGD-------------------------IHKIISGEDGTCCL-- 905
                + W          +                         +   IS  DG+  L  
Sbjct: 148 KRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQT 207

Query: 906 ------GIYTCEAHNCMGTTSSSAAL 925
                 GIYTC  +     +  +  L
Sbjct: 208 VKESDQGIYTCSIYVGKLESRKTIVL 233

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 34/262 (12%), Positives = 69/262 (26%), Gaps = 82/262 (31%)

Query: 443 KAYKAPFFTKELEAILTEQG-TVSLECKVM---GIPTPQLIWYKDNKKIKAGD-IFALTA 497
           ++   P  T     +    G +V + C V         ++ W     K  A + +    +
Sbjct: 1   RSQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYS 60

Query: 498 NPKDPS------------------SL----------GTYTCEAVNCMGAAFSTSRVIARG 529
           N   P+                  SL          G YTCE      +      V    
Sbjct: 61  NLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW- 119

Query: 530 QQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPR--SIYWYN 587
                         ++P  P         +++ ++G +  + C +      R   + W  
Sbjct: 120 --------------VLPEEP--------RDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMF 157

Query: 588 KEG----------------------VVEASDKYHIMADGLGG-YSIEINYLEAVDDGEWK 624
             G                      +    ++  +  D      SI++  ++  D G + 
Sbjct: 158 SSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYT 217

Query: 625 CVATSSSGVKQFSAAYVHVLMP 646
           C         +     +HV+  
Sbjct: 218 CSIYVGKLESR-KTIVLHVVQD 238

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 62.1 bits (151), Expect = 4e-12
 Identities = 15/95 (15%), Positives = 39/95 (41%), Gaps = 15/95 (15%)

Query: 841 VPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISG- 898
           +P+  +      E++++ +  G  + L C++      ++ W +DG +L   +  +I    
Sbjct: 3   LPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITGEE 61

Query: 899 --------EDGTCCLGIYTCEAHNCMGTTSSSAAL 925
                    D     G+Y C   +  G+ ++  ++
Sbjct: 62  VEVRDSIPADS----GLYACVTSSPSGSDTTYFSV 92

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 59.0 bits (143), Expect = 5e-11
 Identities = 14/93 (15%), Positives = 36/93 (38%), Gaps = 13/93 (13%)

Query: 646 PKNYRKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSS 704
           P+  +       +++++   G L+   C++      ++ W +D  +L   +  ++TG   
Sbjct: 4   PEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITG-EE 61

Query: 705 L----------GSYCCVAKNVMGKAESSTQLTI 727
           +          G Y CV  +  G   +   + +
Sbjct: 62  VEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 58.3 bits (141), Expect = 1e-10
 Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 345 QVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNF 404
           +          +  + V  G   +L   +R   +  I+W R+  +L E+   R   +   
Sbjct: 5   EQAQPWGVPVEVESLLVHPGDLLQLRCRLRDDVQ-SINWLRDGVQLVESNRTRITGE--- 60

Query: 405 YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
             +++      DSG + C+  +  G       ++V
Sbjct: 61  -EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 56.0 bits (135), Expect = 7e-10
 Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 8/93 (8%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLK 808
                 ++S      +  +   ++       ++W RD  Q+VES+  +I  E      ++
Sbjct: 10  WGVPVEVESLLVHPGDLLQLRCRLR-DDVQSINWLRDGVQLVESNRTRITGEE-----VE 63

Query: 809 IHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
           +     AD   + C+ ++  G   T     +NV
Sbjct: 64  VRDSIPADSGLYACVTSSPSGSDTTYF--SVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 56.0 bits (135), Expect = 8e-10
 Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 13/94 (13%)

Query: 441 VPKAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALT--- 496
           +P+  +      E+E++L   G  + L C++       + W +D  ++   +   +T   
Sbjct: 3   LPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITGEE 61

Query: 497 -----ANPKDPSSLGTYTCEAVNCMGAAFSTSRV 525
                + P D    G Y C   +  G+  +   V
Sbjct: 62  VEVRDSIPADS---GLYACVTSSPSGSDTTYFSV 92

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 10/94 (10%)

Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV-VEASDKYHIMADGLGGYS 609
                EVE++    G    L C++       SI W  ++GV +  S++  I  + +    
Sbjct: 10  WGVPVEVESLLVHPGDLLQLRCRLRDDV-Q-SINWL-RDGVQLVESNRTRITGEEV---- 62

Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
            E+      D G + CV +S SG        V+V
Sbjct: 63  -EVRDSIPADSGLYACVTSSPSGSDTTY-FSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 82  GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
            NR R        E+ +R     D G Y+   S+ SG  T  F ++V
Sbjct: 52  SNRTRITGE----EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 189 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
            NR R        E+ +R     D G Y+   S+ SG  T  F ++V
Sbjct: 52  SNRTRITGE----EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 296 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
            NR R        E+ +R     D G Y+   S+ SG  T  F ++V
Sbjct: 52  SNRTRITGE----EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 63.0 bits (153), Expect = 6e-12
 Identities = 20/98 (20%), Positives = 30/98 (30%), Gaps = 22/98 (22%)

Query: 652 PRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD----------VYQLTG 701
           P  V+   AV  +         V G P P+L+W  +   L                +   
Sbjct: 4   PASVQLHTAV--EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVR 61

Query: 702 TSSL----------GSYCCVAKNVMGKAESSTQLTIED 729
              L          G+Y  +A N  G+A +S      D
Sbjct: 62  HGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD 99

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 62.3 bits (151), Expect = 1e-11
 Identities = 23/94 (24%), Positives = 30/94 (31%), Gaps = 18/94 (19%)

Query: 848 PKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGT----- 902
           P  ++   AV  E     +   V G P P+L+W  +G  L           E        
Sbjct: 4   PASVQLHTAV--EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVR 61

Query: 903 -CCL----------GIYTCEAHNCMGTTSSSAAL 925
             CL          G YT  A N  G  S+S   
Sbjct: 62  HGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA 95

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 56.9 bits (137), Expect = 9e-10
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 7/76 (9%)

Query: 380 KIHWYRNDRKLEENKIYRTQHDGNFYFID-------LSSVSLFDSGRWTCLAENAVGRSH 432
            + W  N   L E     T+                L+  +  ++G +T LA N  G++ 
Sbjct: 31  SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQAS 90

Query: 433 CSCELSVLVPKAYKAP 448
            S   + +       P
Sbjct: 91  ASIMAAFMDNPFEFNP 106

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 54.6 bits (131), Expect = 6e-09
 Identities = 22/129 (17%), Positives = 33/129 (25%), Gaps = 28/129 (21%)

Query: 448 PFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL-- 505
           P   +   A+  E     +   V G P P L W  +   +               +    
Sbjct: 4   PASVQLHTAV--EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVR 61

Query: 506 --------------GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAP 551
                         G YT  A N  G A ++         +F+DN         P  P P
Sbjct: 62  HGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA------AFMDNPFEF----NPEDPIP 111

Query: 552 IFIKEVENV 560
                  + 
Sbjct: 112 DTNSTSGDP 120

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 51.9 bits (124), Expect = 5e-08
 Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 6/80 (7%)

Query: 776 PEPKVSWFRDDQQVVESDNVKI------LKETLGVCHLKIHALEVADQAEWKCIATNDFG 829
           P P + W  +   + E+  +          ET+    L+++     +   +  +A N FG
Sbjct: 28  PAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG 87

Query: 830 QSITSCFLKLNVPKHYKKPK 849
           Q+  S             P+
Sbjct: 88  QASASIMAAFMDNPFEFNPE 107

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 12/70 (17%), Positives = 17/70 (24%), Gaps = 16/70 (22%)

Query: 2  GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL----------------GTYTCEAVNC 45
          G P P L W  +   +               +                  G YT  A N 
Sbjct: 26 GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 85

Query: 46 MGAAFSTSRV 55
           G A ++   
Sbjct: 86 FGQASASIMA 95

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 65.5 bits (159), Expect = 6e-12
 Identities = 37/209 (17%), Positives = 71/209 (33%), Gaps = 44/209 (21%)

Query: 558 ENVKAKIGTSAILECQV--LVPPWPRSIYWYNK--EGVV---------------EASDKY 598
             + A +G  A L C +   +      + W +     VV                   + 
Sbjct: 12  GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRT 71

Query: 599 HIMADGL--GGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVE 656
            I+ DG+  G  ++ I+ + A D G++ C        ++   A V + +           
Sbjct: 72  SILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEK---ALVELKVAALGSDL---- 124

Query: 657 SLKAVMTDDGLVSFECKVVG-FPTPTLQWFKDNEELKP----------GDVYQLTGT--- 702
            +      DG +  EC+  G +P P +QW  +  E  P            +Y +  +   
Sbjct: 125 HVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIM 184

Query: 703 --SSLGSYCCVAKNVMGKAESSTQLTIED 729
             SS     C  ++ +   E +  ++I D
Sbjct: 185 RGSSGEGVSCTIRSSLLGLEKTASISIAD 213

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 47.8 bits (113), Expect = 6e-06
 Identities = 28/175 (16%), Positives = 59/175 (33%), Gaps = 29/175 (16%)

Query: 374 RSPTEIKIHWYRNDRKLEENKIY----RTQ------HDGNFYFIDLSSVSLFDSGRWTCL 423
            S     ++ Y + +++E+ +      RT         G    + + +V+  DSG++ C 
Sbjct: 43  SSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAA-LRIHNVTASDSGKYLCY 101

Query: 424 AENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGI-PTPQLIWYK 482
            ++         EL         A      ++    + G + LEC+  G  P PQ+ W  
Sbjct: 102 FQDGDFYEKALVELK------VAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSN 155

Query: 483 DNKKIKAGDIFALTANPKD-----------PSSLGTYTCEAVNCMGAAFSTSRVI 526
           +  +        + A+               SS    +C   + +     T+ + 
Sbjct: 156 NKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASIS 210

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 28/171 (16%), Positives = 63/171 (36%), Gaps = 26/171 (15%)

Query: 775 SPEPKVSWFRDDQQVVESDN------VKILKETL--GVCHLKIHALEVADQAEWKCIATN 826
           S    V+ + D ++V +  +        IL++ +  G   L+IH +  +D  ++ C   +
Sbjct: 45  SLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQD 104

Query: 827 DFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIG-VPQPTLKWFKDGR 885
             G       ++L V            +     + G ++LEC+  G  PQP ++W  +  
Sbjct: 105 --GDFYEKALVELKVAALGSDL----HVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKG 158

Query: 886 ELKAGDIHKIISGEDGTCCL-----------GIYTCEAHNCMGTTSSSAAL 925
           E        +++   G   +              +C   + +     +A++
Sbjct: 159 ENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASI 209

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 25/163 (15%), Positives = 43/163 (26%), Gaps = 14/163 (8%)

Query: 287 RAQGDHPIFGNR---FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
                   +  R    R     G+  L I  V   D G+Y     +   Y  A  EL   
Sbjct: 59  VEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVEL--- 115

Query: 344 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR--SPTEIKIHWYRND-RKLEENKIYRTQH 400
                A        D+         L        P + +I W  N    +   +      
Sbjct: 116 ---KVAALGSDLHVDVKGYKDGGIHLECRSTGWYP-QPQIQWSNNKGENIPTVEAPVVAD 171

Query: 401 DGNFYFIDLS-SVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
               Y +  S  +        +C   +++     +  +S+  P
Sbjct: 172 GVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP 214

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 64.5 bits (157), Expect = 1e-11
 Identities = 32/164 (19%), Positives = 53/164 (32%), Gaps = 31/164 (18%)

Query: 771 QVSISPEP-KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFG 829
           Q + SPE     WF ++  +    +              I A  V D  E++C       
Sbjct: 30  QGAYSPEDQSTQWFHNESLISSQAS-----------SYFIDAATVDDSGEYRCQTQL--- 75

Query: 830 QSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKV-IGVPQPTLKWFKDGRELK 888
            S  S  ++L V  H      L+  + V  E   ++L C          + + ++G+  K
Sbjct: 76  -STLSDPVQLEV--HIG-WLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRK 131

Query: 889 AGD------IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALL 926
                    I K  + +D     G Y C         SS    +
Sbjct: 132 YFHHNSDFYIPKA-TLKDS----GSYFCRGLVGSKNVSSETVQI 170

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 64.5 bits (157), Expect = 1e-11
 Identities = 25/157 (15%), Positives = 54/157 (34%), Gaps = 25/157 (15%)

Query: 375 SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCS 434
           SP +    W+ N+  +            +++   + + ++ DSG + C  + +   S   
Sbjct: 34  SPEDQSTQWFHNESLISS-------QASSYF---IDAATVDDSGEYRCQTQLST-LS-DP 81

Query: 435 CELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKV-MGIPTPQLIWYKDNKKIKA---- 489
            +L V +          +    +  E+  + L C         ++ + ++ K  K     
Sbjct: 82  VQLEVHIG-----WLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHN 136

Query: 490 GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
            D +   A  KD    G+Y C  +       S +  I
Sbjct: 137 SDFYIPKATLKDS---GSYFCRGLVGSKNVSSETVQI 170

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 57.6 bits (139), Expect = 2e-09
 Identities = 28/182 (15%), Positives = 59/182 (32%), Gaps = 27/182 (14%)

Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGY 608
           P  +   E +  +     S  L+CQ    P  +S  W++ E ++ +              
Sbjct: 6   PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQAS----------- 54

Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFS-AAYVHVLMPKNYRKPRFVESLKAVMTDDGL 667
           S  I+     D GE++C    S+     S    + V +         +++ + V  ++  
Sbjct: 55  SYFIDAATVDDSGEYRCQTQLST----LSDPVQLEVHIG-----WLLLQAPRWVFKEEDP 105

Query: 668 VSFECKV-VGFPTPTLQWFKDNEELKP---GDVYQLTGTSSL--GSYCCVAKNVMGKAES 721
           +   C          + + ++ +  K       + +   +    GSY C          S
Sbjct: 106 IHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSS 165

Query: 722 ST 723
            T
Sbjct: 166 ET 167

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 19/141 (13%), Positives = 37/141 (26%), Gaps = 17/141 (12%)

Query: 309 ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRAR 368
              I     DD G Y           +   +L V          + +      K      
Sbjct: 55  SYFIDAATVDDSGEYRCQTQL--STLSDPVQLEVHI-----GWLLLQAPRWVFKEEDPIH 107

Query: 369 LLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA 427
           L           K+ + +N +        +  H  + ++I     +L DSG + C     
Sbjct: 108 LRCHSWKNTALHKVTYLQNGKGR------KYFHHNSDFYI--PKATLKDSGSYFCRGLVG 159

Query: 428 VGRSHCSCELSVLVPKAYKAP 448
                 S  + + + +     
Sbjct: 160 SKNVS-SETVQITITQGLAVS 179

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 23/182 (12%), Positives = 45/182 (24%), Gaps = 34/182 (18%)

Query: 463 TVSLECKVMGIPTPQLI-WYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFS 521
           +V+L+C+    P  Q   W+ +   I +    +   +       G Y C+      +  S
Sbjct: 24  SVTLKCQGAYSPEDQSTQWFHNESLISSQA-SSYFIDAATVDDSGEYRCQTQL---STLS 79

Query: 522 TSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPR 581
               +           +V    L+   P  +F +              L C         
Sbjct: 80  DPVQL-----------EVHIGWLLLQAPRWVFKE---------EDPIHLRCHSWKNTALH 119

Query: 582 SIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYV 641
            + +  + G                     I      D G + C     S         +
Sbjct: 120 KVTYL-QNG--------KGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQI 170

Query: 642 HV 643
            +
Sbjct: 171 TI 172

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 19/84 (22%)

Query: 855 KAVLS---------EGGAVNLECKVIGVPQP-TLKWFKDGRELKAGDIHKIISG---EDG 901
           KAV+          E  +V L+C+    P+  + +WF +   + +      I     +D 
Sbjct: 7   KAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFIDAATVDDS 66

Query: 902 TCCLGIYTCEAHNCMGTTSSSAAL 925
               G Y C+      T S    L
Sbjct: 67  ----GEYRCQTQL--STLSDPVQL 84

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 15/143 (10%), Positives = 42/143 (29%), Gaps = 26/143 (18%)

Query: 10  WYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTS---------RVIARGQ 60
           W+ +   I +    +   +       G Y C+      +  S            ++   +
Sbjct: 42  WFHNESLISSQA-SSYFIDAATVDDSGEYRCQTQL---STLSDPVQLEVHIGWLLLQAPR 97

Query: 61  QSFLDNDDVPFN-RAQGDHPIFGNRFRAINRDGRT--------ELNIRRVRRDDGGRYSV 111
             F + D +     +  +  +    +    ++G+         +  I +    D G Y  
Sbjct: 98  WVFKEEDPIHLRCHSWKNTALHKVTYL---QNGKGRKYFHHNSDFYIPKATLKDSGSYFC 154

Query: 112 TASNESG-YSTAKFELSVESQVP 133
                S   S+   ++++   + 
Sbjct: 155 RGLVGSKNVSSETVQITITQGLA 177

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 63.0 bits (153), Expect = 2e-11
 Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 24/167 (14%)

Query: 358 DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNF---YFIDLSSVSL 414
            I   V       V    P + ++ W +   K+ E +    +   +F    ++D  S SL
Sbjct: 4   QIYGVVYGNVTFHVPSNVPLK-EVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62

Query: 415 -------FDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLE 467
                   D   +   + N          +  +V K    P        I  E    +L 
Sbjct: 63  TIYNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSK----PM-------IYWECSNATLT 111

Query: 468 CKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVN 514
           C+V+     +L  Y+  + +++     ++    +      + C+AVN
Sbjct: 112 CEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLR--APFKCKAVN 156

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 60.3 bits (146), Expect = 1e-10
 Identities = 33/179 (18%), Positives = 62/179 (34%), Gaps = 23/179 (12%)

Query: 756 KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI---------LKETLGVCH 806
           +     V     F V  ++ P  +V W +   +V E +N +          +        
Sbjct: 3   QQIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS 61

Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNL 866
           L I+ L  +D+ E++  + N    + T  F  L V +   KP        +  E     L
Sbjct: 62  LTIYNLTSSDEDEYEMESPN---ITDTMKF-FLYVLEMVSKPM-------IYWECSNATL 110

Query: 867 ECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
            C+V+      LK ++    L++     +      T     + C+A N +   S    +
Sbjct: 111 TCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQW--TNLRAPFKCKAVNRVSQESEMEVV 167

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 58.0 bits (140), Expect = 7e-10
 Identities = 25/180 (13%), Positives = 60/180 (33%), Gaps = 25/180 (13%)

Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWY-NKEGVVEASDKYHIMADGLGG--------Y 608
           + +   +  +        VP   + + W   K+ V E  +                    
Sbjct: 3   QQIYGVVYGNVTFHVPSNVPL--KEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60

Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLV 668
           S+ I  L + D+ E++  + + +   +F    ++VL      KP        +  +    
Sbjct: 61  SLTIYNLTSSDEDEYEMESPNITDTMKFF---LYVLEM--VSKPM-------IYWECSNA 108

Query: 669 SFECKVVGFPTPTLQWFKDNEELKPGDVYQLT--GTSSLGSYCCVAKNVMGKAESSTQLT 726
           +  C+V+      L+ ++  E L+      ++   T+    + C A N + +      + 
Sbjct: 109 TLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN 168

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 57.6 bits (139), Expect = 1e-09
 Identities = 31/190 (16%), Positives = 51/190 (26%), Gaps = 25/190 (13%)

Query: 251 DIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE 309
            I   V       V    P  E+  +   +               F NR       G   
Sbjct: 4   QIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS-- 61

Query: 310 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 369
           L I  +   D   Y + + N +   T KF L V   V   P       +          L
Sbjct: 62  LTIYNLTSSDEDEYEMESPNITD--TMKFFLYVLEMVS-KPMIYWECSNA--------TL 110

Query: 370 LVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG 429
             E+   T++++  Y+    L   +              +S         + C A N V 
Sbjct: 111 TCEVLEGTDVELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVS 159

Query: 430 RSHCSCELSV 439
           +      ++ 
Sbjct: 160 QESEMEVVNC 169

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 28/200 (14%), Positives = 48/200 (24%), Gaps = 35/200 (17%)

Query: 144 DIAVKVGTRARLLVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE 202
            I   V       V    P  E+  +   +               F NR       G   
Sbjct: 4   QIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS-- 61

Query: 203 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 262
           L I  +   D   Y + + N +   T KF L V   V   P       +          L
Sbjct: 62  LTIYNLTSSDEDEYEMESPNITD--TMKFFLYVLEMVS-KPMIYWECSNA--------TL 110

Query: 263 LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGR 322
             E+   T+++ +         S R                     +  +     +    
Sbjct: 111 TCEVLEGTDVELKLYQGKEHLRSLR---------------------QKTMSYQWTNLRAP 149

Query: 323 YSVTASNESGYSTAKFELSV 342
           +   A N     +    ++ 
Sbjct: 150 FKCKAVNRVSQESEMEVVNC 169

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 24/164 (14%), Positives = 41/164 (25%), Gaps = 34/164 (20%)

Query: 72  NRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ 131
           N        F NR       G   L I  +   D   Y + + N +   T KF L V   
Sbjct: 40  NSEFRAFSSFKNRVYLDTVSGS--LTIYNLTSSDEDEYEMESPNITD--TMKFFLYVLEM 95

Query: 132 VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNR 191
           V   P       +          L  E+   T+++ +         S R           
Sbjct: 96  VS-KPMIYWECSNA--------TLTCEVLEGTDVELKLYQGKEHLRSLR----------- 135

Query: 192 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
                     +  +     +    +   A N     +    ++ 
Sbjct: 136 ----------QKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 169

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 63.0 bits (153), Expect = 2e-11
 Identities = 23/172 (13%), Positives = 54/172 (31%), Gaps = 26/172 (15%)

Query: 357 HDIAVKVGTRARLLVEIRSPTEIK------------IHWYRNDRKLEENKIY--RTQHDG 402
            ++    G+   L +        +            + ++ N +K     ++  R   D 
Sbjct: 7   PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDK 66

Query: 403 NFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG 462
               + + +VS  D G +     +          + V        P        I  E  
Sbjct: 67  TNGALRIYNVSKEDRGDYYMRMLHETEDQW-KITMEVYEM--VSKPM-------IYWECS 116

Query: 463 TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVN 514
             +L C+V+     +L  Y+  + +++     ++    +      + C+AVN
Sbjct: 117 NATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLR--APFKCKAVN 166

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 61.4 bits (149), Expect = 7e-11
 Identities = 30/196 (15%), Positives = 57/196 (29%), Gaps = 29/196 (14%)

Query: 250 HDIAVKVGTRARLLVEIRSPTEIKC---QFDLNNTIPFSFRAQGD---HPIFGNRFRAIN 303
            ++    G+   L +        +        N  I   F          +F +R     
Sbjct: 7   PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDK 66

Query: 304 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKV 363
            +G   L I  V ++D G Y +   +E+     K  + V   V   P             
Sbjct: 67  TNG--ALRIYNVSKEDRGDYYMRMLHETE-DQWKITMEVYEMVSK-PMIYWE-------- 114

Query: 364 GTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCL 423
            + A L  E+   T++++  Y+    L   +              +S         + C 
Sbjct: 115 CSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCK 163

Query: 424 AENAVGRSHCSCELSV 439
           A N V +      ++ 
Sbjct: 164 AVNRVSQESEMEVVNC 179

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 60.3 bits (146), Expect = 2e-10
 Identities = 22/185 (11%), Positives = 58/185 (31%), Gaps = 25/185 (13%)

Query: 556 EVENVKAKIGTSAILECQVLVPPWPRSIYWY---NKEGVVEASDKYHIMADG-------- 604
            V NV A  G++  L          + + W    N++ +    +    + +         
Sbjct: 5   SVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL 64

Query: 605 -LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMT 663
                ++ I  +   D G++       +  +      V+ ++ K    P        +  
Sbjct: 65  DKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSK----PM-------IYW 113

Query: 664 DDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL--GSYCCVAKNVMGKAES 721
           +    +  C+V+      L+ ++  E L+      ++   +     + C A N + +   
Sbjct: 114 ECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESE 173

Query: 722 STQLT 726
              + 
Sbjct: 174 MEVVN 178

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 57.6 bits (139), Expect = 1e-09
 Identities = 25/189 (13%), Positives = 60/189 (31%), Gaps = 37/189 (19%)

Query: 753 EGLKSCQATVNEEFKFTVQVSISPEPK-VSWFR-DDQQVVE--------------SDNVK 796
           + + +  A        T+        + ++W    +Q+++E               D V 
Sbjct: 4   QSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVD 63

Query: 797 ILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKA 856
           + K       L+I+ +   D+ ++     ++         + + V +   KP        
Sbjct: 64  LDKTN---GALRIYNVSKEDRGDYYMRMLHETEDQWK---ITMEVYEMVSKPM------- 110

Query: 857 VLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAG---DIHKIISGEDGTCCLGIYTCEAH 913
           +  E     L C+V+      LK ++    L++     +    +          + C+A 
Sbjct: 111 IYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAP-----FKCKAV 165

Query: 914 NCMGTTSSS 922
           N +   S  
Sbjct: 166 NRVSQESEM 174

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 27/206 (13%), Positives = 54/206 (26%), Gaps = 39/206 (18%)

Query: 143 HDIAVKVGTRARLLVEIRSPTEIKC---QFDLNNTIPFSFRAQGD---HPIFGNRFRAIN 196
            ++    G+   L +        +        N  I   F          +F +R     
Sbjct: 7   PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDK 66

Query: 197 RDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKV 256
            +G   L I  V ++D G Y +   +E+     K  + V   V   P             
Sbjct: 67  TNG--ALRIYNVSKEDRGDYYMRMLHETE-DQWKITMEVYEMVSK-PMIYWE-------- 114

Query: 257 GTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVR 316
            + A L  E+   T+++ +         S R                     +  +    
Sbjct: 115 CSNATLTCEVLEGTDVELKLYQGKEHLRSLR---------------------QKTMSYQW 153

Query: 317 RDDGGRYSVTASNESGYSTAKFELSV 342
            +    +   A N     +    ++ 
Sbjct: 154 TNLRAPFKCKAVNRVSQESEMEVVNC 179

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 61.2 bits (148), Expect = 3e-11
 Identities = 17/112 (15%), Positives = 32/112 (28%), Gaps = 12/112 (10%)

Query: 344 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIK--IHWYRNDRKLEENKI----- 395
           S       FI +     VKVG     + +++      K  I W++       +K      
Sbjct: 2   SSGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQ 61

Query: 396 ----YRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPK 443
               +        + + +       +G + C          CS +L V    
Sbjct: 62  LKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 113

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 60.8 bits (147), Expect = 4e-11
 Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 26/104 (25%)

Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFP---TPTLQWFKDNEELKP------------GD 695
             F+E  +      G  ++F  KV        PT++WFK                    +
Sbjct: 8   ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFE 67

Query: 696 VYQLTGTSSL----------GSYCCVAKNVMGKAESSTQLTIED 729
            +    T  +          G+Y C           S  L + +
Sbjct: 68  RHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHE 111

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 59.6 bits (144), Expect = 7e-11
 Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 2/116 (1%)

Query: 130 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKCQFD-LNNTIPFSFRAQGDHPI 187
           S       FI +     VKVG     + +++      K                 G H  
Sbjct: 2   SSGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQ 61

Query: 188 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 243
               F   +R    E+ I + + +  G Y    + +  + +  F+L V       P
Sbjct: 62  LKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTP 117

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 59.6 bits (144), Expect = 7e-11
 Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 2/116 (1%)

Query: 237 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKCQFD-LNNTIPFSFRAQGDHPI 294
           S       FI +     VKVG     + +++      K                 G H  
Sbjct: 2   SSGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQ 61

Query: 295 FGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 350
               F   +R    E+ I + + +  G Y    + +  + +  F+L V       P
Sbjct: 62  LKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTP 117

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 58.9 bits (142), Expect = 2e-10
 Identities = 23/118 (19%), Positives = 36/118 (30%), Gaps = 22/118 (18%)

Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVP---QPTLKWFKDG-RELKAGDIHKIISGEDG- 901
             F+E+ +   +  G  +    KV       +PT+KWFK    +L +     +   E   
Sbjct: 8   ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFE 67

Query: 902 ------TCCL----------GIYTCEAHNCMGTTSSSAALLGFEDKSQIEKAEEGKKA 943
                 T  +          G Y CE        S S  L   E        + G  +
Sbjct: 68  RHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNIDSGPSS 125

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 56.5 bits (136), Expect = 1e-09
 Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 13/109 (11%)

Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFTVQVSISP---EPKVSWFRDDQQVVESDNVKILK- 799
           + +    FIE  +     V E+  F  +V       +P + WF+     + S   K L+ 
Sbjct: 3   SGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQL 62

Query: 800 -------ETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
                    +    ++I   +      ++C  T        SC   L V
Sbjct: 63  KETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFD--SCSFDLEV 109

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 52.7 bits (126), Expect = 3e-08
 Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 10/100 (10%)

Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPR--SIYWY-NKEGVVEASDKYHI----- 600
              +FI++ +    K+G       +V      R  +I W+  K   + +    H+     
Sbjct: 6   SGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKET 65

Query: 601 --MADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSA 638
                 +  + ++I   +    G ++C  T        S 
Sbjct: 66  FERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSF 105

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 48.5 bits (115), Expect = 6e-07
 Identities = 16/98 (16%), Positives = 27/98 (27%), Gaps = 22/98 (22%)

Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIP---TPQLIWYKDNKK---IKAGDIFALTANP 499
              F ++ +    + G  ++   KV        P + W+K        KAG    L    
Sbjct: 7   GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF 66

Query: 500 KDPSSL---------------GTYTCEAVNCMGAAFST 522
           +  S +               G Y CE          +
Sbjct: 67  ERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCS 104

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 48.1 bits (114), Expect = 9e-07
 Identities = 12/61 (19%), Positives = 22/61 (36%)

Query: 76  GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDA 135
           G H      F   +R    E+ I + + +  G Y    + +  + +  F+L V       
Sbjct: 57  GKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 116

Query: 136 P 136
           P
Sbjct: 117 P 117

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 59.9 bits (145), Expect = 5e-11
 Identities = 25/114 (21%), Positives = 37/114 (32%), Gaps = 22/114 (19%)

Query: 829 GQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQP-TLKWFKDGREL 887
           G S +S  L +N P     P            G    ++C +   P P  + W      L
Sbjct: 1   GSSGSSGTLTVNGP-----PIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVL 55

Query: 888 KAGDIHKI----ISGEDGTCCL------------GIYTCEAHNCMGTTSSSAAL 925
           ++G   +     IS E+G                 IY C A N  G+ +    L
Sbjct: 56  ESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRL 109

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 59.5 bits (144), Expect = 1e-10
 Identities = 22/118 (18%), Positives = 37/118 (31%), Gaps = 22/118 (18%)

Query: 429 GRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLI-WYKDNKKI 487
           G S  S  L+V  P     P  +              ++C +   P P  I W      +
Sbjct: 1   GSSGSSGTLTVNGP-----PIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVL 55

Query: 488 KAGD-----IFALTANPKDPSSL-----------GTYTCEAVNCMGAAFSTSRVIARG 529
           ++G      +  ++      S+L             Y C A N  G+     R+  +G
Sbjct: 56  ESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQG 113

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 58.4 bits (141), Expect = 2e-10
 Identities = 25/116 (21%), Positives = 35/116 (30%), Gaps = 13/116 (11%)

Query: 332 GYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS-PTEIKIHWYRNDRKL 390
           G S +   L+V       P  I          G + ++   IRS P   +I W   +  L
Sbjct: 1   GSSGSSGTLTVN-----GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVL 55

Query: 391 EENKIYR----TQHDGNFYFIDL--SSVSLFDSGRW-TCLAENAVGRSHCSCELSV 439
           E     R    T          L  S++   D      C A N+ G       L  
Sbjct: 56  ESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 56.8 bits (137), Expect = 6e-10
 Identities = 26/131 (19%), Positives = 40/131 (30%), Gaps = 15/131 (11%)

Query: 118 GYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS---PTEIKCQFDLNNT 174
           G S +   L+V       P  I          G + ++   IRS   P  I   +   N 
Sbjct: 1   GSSGSSGTLTVN-----GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWK-ENV 54

Query: 175 IPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRR-DDGGRYSVTASNESGYSTAKFEL 233
           +       G    +     +      + L I  + R D    Y+ TA N  G  T    L
Sbjct: 55  LE-----SGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRL 109

Query: 234 SVESQVPDAPA 244
             +      P+
Sbjct: 110 KEQGSEMSGPS 120

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 56.8 bits (137), Expect = 6e-10
 Identities = 26/131 (19%), Positives = 40/131 (30%), Gaps = 15/131 (11%)

Query: 225 GYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS---PTEIKCQFDLNNT 281
           G S +   L+V       P  I          G + ++   IRS   P  I   +   N 
Sbjct: 1   GSSGSSGTLTVN-----GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWK-ENV 54

Query: 282 IPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRR-DDGGRYSVTASNESGYSTAKFEL 340
           +       G    +     +      + L I  + R D    Y+ TA N  G  T    L
Sbjct: 55  LE-----SGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRL 109

Query: 341 SVESQVPDAPA 351
             +      P+
Sbjct: 110 KEQGSEMSGPS 120

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 51.8 bits (124), Expect = 5e-08
 Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 22/99 (22%)

Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTP-TLQWFKDNEELKPGDVYQLTG-------- 701
           P  + S +      G     +C +   P P  + W      L+ G   + T         
Sbjct: 14  PPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEG 73

Query: 702 -TSSL-----------GSYCCVAKNVMGKAESSTQLTIE 728
             S+L             Y C A N  G      +L  +
Sbjct: 74  VISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ 112

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 28/129 (21%), Positives = 46/129 (35%), Gaps = 26/129 (20%)

Query: 717 GKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISP 776
           G + SS  LT+                     P  I   ++  A   E+ +    +  +P
Sbjct: 1   GSSGSSGTLTV-------------------NGPPIISSTQTQHALHGEKGQIKCFIRSTP 41

Query: 777 EP-KVSWFRDDQQVVESDNVKILKETL----GVCH-LKIHALEVAD-QAEWKCIATNDFG 829
            P +++W   +  +    + +   ET+    GV   L I  +  AD Q  + C A N FG
Sbjct: 42  PPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFG 101

Query: 830 QSITSCFLK 838
                  LK
Sbjct: 102 SDTEIIRLK 110

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 6/89 (6%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEAS--DKYHIMADGLGG 607
            P  I   +   A  G    ++C +   P P  I W  KE V+E+    +Y +       
Sbjct: 13  GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 72

Query: 608 YSI---EINYLEAVDDG-EWKCVATSSSG 632
             I    I+ +   D    + C A +S G
Sbjct: 73  GVISTLTISNIVRADFQTIYNCTAWNSFG 101

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 1/63 (1%)

Query: 76  GDHPIFGNRFRAINRDGRTELNIRRVRR-DDGGRYSVTASNESGYSTAKFELSVESQVPD 134
           G    +     +      + L I  + R D    Y+ TA N  G  T    L  +     
Sbjct: 58  GTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMS 117

Query: 135 APA 137
            P+
Sbjct: 118 GPS 120

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 59.1 bits (143), Expect = 6e-11
 Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 9/70 (12%)

Query: 668 VSFECKVV-GFPTPTLQWFKDNEELKPGDVYQLTGT--------SSLGSYCCVAKNVMGK 718
           V+F C      P  TL W + +    P       G         S  G+Y C   N+   
Sbjct: 28  VTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAM 87

Query: 719 AESSTQLTIE 728
            + +  L ++
Sbjct: 88  DQGTATLHVQ 97

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 56.4 bits (136), Expect = 5e-10
 Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 10/100 (10%)

Query: 346 VPDAPAFI--RRLHDIAVKVGTRARL--LVEIRSPTEIKIHWYRNDRKLEENKIYRTQHD 401
            P  P  +        +V+ G         + +SP    + W R       ++      +
Sbjct: 5   APSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPA-YTLVWTRLHNGKLPSR--AMDFN 61

Query: 402 GNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV 441
           G      + +V   D+G + C   N       +  L V V
Sbjct: 62  GILT---IRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQV 98

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 14/78 (17%), Positives = 18/78 (23%), Gaps = 13/78 (16%)

Query: 857 VLSEGGAVNLECKVI-GVPQPTLKWFKDGRELKAGDIHKI--------ISGEDGTCCLGI 907
            +  G  V   C      P  TL W +                     +   D     G 
Sbjct: 21  SVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDA----GT 76

Query: 908 YTCEAHNCMGTTSSSAAL 925
           Y C   N       +A L
Sbjct: 77  YVCTGSNMFAMDQGTATL 94

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 22/110 (20%)

Query: 132 VPDAPAFI--RRLHDIAVKVGTRARL--LVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHP 186
            P  P  +        +V+ G         + +SP   +      N  +P          
Sbjct: 5   APSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS--------- 55

Query: 187 IFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
                 RA++ +G   L IR V+  D G Y  T SN          L V+
Sbjct: 56  ------RAMDFNG--ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 22/110 (20%)

Query: 239 VPDAPAFI--RRLHDIAVKVGTRARL--LVEIRSPT-EIKCQFDLNNTIPFSFRAQGDHP 293
            P  P  +        +V+ G         + +SP   +      N  +P          
Sbjct: 5   APSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS--------- 55

Query: 294 IFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
                 RA++ +G   L IR V+  D G Y  T SN          L V+
Sbjct: 56  ------RAMDFNG--ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 9/100 (9%)

Query: 546 PPGPAPIFIKEVENVKAKIGTSAILECQVLV-PPWPRSIYWYNKEGVVEASDKYHIMADG 604
           P  P  + ++E  +   + G      C      P    + W         S    +  +G
Sbjct: 6   PSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYT-LVWTRLHNGKLPSR--AMDFNG 62

Query: 605 LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAA-YVHV 643
                + I  ++  D G + C  ++   + Q +A  +V V
Sbjct: 63  ----ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQV 98

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 86  RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
           RA++ +G   L IR V+  D G Y  T SN          L V+
Sbjct: 56  RAMDFNG--ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 18/88 (20%), Positives = 26/88 (29%), Gaps = 7/88 (7%)

Query: 446 KAPFFTKELEAILT--EQGTVSLECKVM-GIPTPQLIWYKDNKKIKAGDIF----ALTAN 498
           K    T E +   +      V+  C      P   L+W + +              LT  
Sbjct: 8   KPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIR 67

Query: 499 PKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
              PS  GTY C   N       T+ + 
Sbjct: 68  NVQPSDAGTYVCTGSNMFAMDQGTATLH 95

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 775 SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITS 834
           SP   + W R     + S  +    +  G+  L I  ++ +D   + C  +N F     +
Sbjct: 38  SPAYTLVWTRLHNGKLPSRAM----DFNGI--LTIRNVQPSDAGTYVCTGSNMFAMDQGT 91

Query: 835 CFLKLNV 841
             L + V
Sbjct: 92  ATLHVQV 98

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 62.1 bits (150), Expect = 9e-11
 Identities = 27/215 (12%), Positives = 60/215 (27%), Gaps = 46/215 (21%)

Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWY-------------------NKEGVVEASDKY 598
             V+   G S IL+C          + W+                     +  +  +   
Sbjct: 8   PLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGR 67

Query: 599 HIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESL 658
                      + +   +  D+ ++ CV  + +     + A ++V       +    +  
Sbjct: 68  SPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGT 127

Query: 659 KAVMTDDGLVSFECKVVGF-PTPTLQWFKDNEELKPGDVYQ----------------LTG 701
            +VM D       C      P P + W+++ + L+                      L+ 
Sbjct: 128 LSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSL 187

Query: 702 TSSL----------GSYCCVAKNVMGKAESSTQLT 726
           TS+L           S+ C A   + +       +
Sbjct: 188 TSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDS 222

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 48.7 bits (115), Expect = 3e-06
 Identities = 24/206 (11%), Positives = 56/206 (27%), Gaps = 45/206 (21%)

Query: 358 DIAVKVGTRARLLVEIRSPTEIK-IHWYRNDRKLEENKIYRTQHDGNF------------ 404
            + V  G    L        +   + W+  DR     ++   +  G+             
Sbjct: 9   LVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRS 68

Query: 405 --------YFIDLSSVSLFDSGRWTCLAE-NAVGRSHCSCELSVLVPKAYKAPFFTKELE 455
                     + L+   + D   + C+    A G +  +  L+V            K   
Sbjct: 69  PPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTL 128

Query: 456 AILTEQGTVSLECKVM-GIPTPQLIWYKDNKKIKAGDIFA-------------------- 494
           +++ +       C    G P P++ WY++ ++++                          
Sbjct: 129 SVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLT 188

Query: 495 --LTANPKDPSSLGTYTCEAVNCMGA 518
             L    +      ++ C A   +  
Sbjct: 189 STLYLRLRKDDRDASFHCAAHYSLPE 214

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 47.5 bits (112), Expect = 7e-06
 Identities = 23/139 (16%), Positives = 47/139 (33%), Gaps = 32/139 (23%)

Query: 806 HLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLE-----ELKAVLSE 860
            L +   +V D+ ++ C+       +  +   +LNV   + KP+  E        +V+ +
Sbjct: 78  RLVLAEAQVGDERDYVCVVRAGAAGTAEA-TARLNV---FAKPEATEVSPNKGTLSVMED 133

Query: 861 GGAVNLECKVI-GVPQPTLKWFKDGRELKAGD--------IHKIISGEDGTCCL------ 905
                  C    G P P + W+++G+ L+             + +    G   L      
Sbjct: 134 SAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYL 193

Query: 906 --------GIYTCEAHNCM 916
                     + C AH  +
Sbjct: 194 RLRKDDRDASFHCAAHYSL 212

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 10/136 (7%)

Query: 382 HWYRND--RKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
              +N   R++     +  + D  F       +    +GR+ C       R   S  L +
Sbjct: 42  MIIKNSTYREIGRRLKFWNETDPEFVI---DHMDANKAGRYQCQYRIGHYRFRYSDTLEL 98

Query: 440 LVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNK-----KIKAGDIFA 494
           +V   Y  PF + +   +L     +SL C    IP  +    K+ +              
Sbjct: 99  VVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPAN 158

Query: 495 LTANPKDPSSLGTYTC 510
            +  P D +  G Y C
Sbjct: 159 FSLGPVDLNVSGIYRC 174

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 23/151 (15%), Positives = 40/151 (26%), Gaps = 4/151 (2%)

Query: 272 IKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNES 331
           I+CQ      +      +        R      +   E  I  +  +  GRY        
Sbjct: 28  IQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGH 87

Query: 332 GYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLE 391
                   L +         F+     + +  G    L          +    + + +L 
Sbjct: 88  YRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLAK-EGELS 146

Query: 392 ENKIYRTQHDGNFYFIDLSSVSLFDSGRWTC 422
             +    +H  NF    L  V L  SG + C
Sbjct: 147 LPQHQSGEHPANFS---LGPVDLNVSGIYRC 174

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 19/129 (14%), Positives = 41/129 (31%), Gaps = 3/129 (2%)

Query: 565 GTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWK 624
             S  ++CQ +   +   +    K        +  +           I++++A   G ++
Sbjct: 23  DGSVKIQCQAIREAYLTQLMII-KNSTYREIGR-RLKFWNETDPEFVIDHMDANKAGRYQ 80

Query: 625 CVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQW 684
           C         ++S   + +++   Y KP        V+     +S  C     P      
Sbjct: 81  CQYRIGHYRFRYSDT-LELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSL 139

Query: 685 FKDNEELKP 693
            K+ E   P
Sbjct: 140 AKEGELSLP 148

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 55.0 bits (132), Expect = 2e-09
 Identities = 19/104 (18%), Positives = 28/104 (26%), Gaps = 26/104 (25%)

Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFP---TPTLQWFKDNEELKP------------GD 695
             FV   +      G  ++F  +V G      P ++WFK                    D
Sbjct: 5   GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYD 64

Query: 696 VYQLTGTSSL----------GSYCCVAKNVMGKAESSTQLTIED 729
                    L          GSY C          S+  LT+ +
Sbjct: 65  RASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 54.2 bits (130), Expect = 4e-09
 Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 2/103 (1%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKCQFD-LNNTIPFSFRAQGDHPIFGNRF 192
              F+ R  D  V VG        +  +                      G H    + +
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 193 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
              ++    EL+I   +    G Y    S +  +  + F L+V
Sbjct: 64  DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 54.2 bits (130), Expect = 4e-09
 Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 2/103 (1%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKCQFD-LNNTIPFSFRAQGDHPIFGNRF 299
              F+ R  D  V VG        +  +                      G H    + +
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 300 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
              ++    EL+I   +    G Y    S +  +  + F L+V
Sbjct: 64  DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 54.2 bits (130), Expect = 4e-09
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 22/98 (22%)

Query: 850 FLEELKAV-LSEGGAVNLECKVIGVP---QPTLKWFKDGRELKAGDIHKIIS-------- 897
           F+   +   ++ GG++    +V G      P +KWFK      +  + + +         
Sbjct: 7   FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRA 66

Query: 898 GEDGTCCL----------GIYTCEAHNCMGTTSSSAAL 925
            +     L          G Y CE         S+  L
Sbjct: 67  SKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNL 104

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 53.5 bits (128), Expect = 9e-09
 Identities = 12/100 (12%), Positives = 34/100 (34%), Gaps = 10/100 (10%)

Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPR--SIYWY-NKEGVVEASDKYHI----- 600
           P  +F+   ++ +  +G S     +V      +   + W+  K   + +    H+     
Sbjct: 3   PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62

Query: 601 --MADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSA 638
              A  +  + + I   +    G ++C  ++       + 
Sbjct: 63  YDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNF 102

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 52.3 bits (125), Expect = 2e-08
 Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 13/105 (12%)

Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISP---EPKVSWFRDDQQVVESDNVKILK----- 799
              F+   +  + TV     F+ +V+ +     P V WF+     + S   + L+     
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 800 ---ETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
                + +  L I   + A    ++C  +             L V
Sbjct: 64  DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFD--CSNFNLTV 106

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 50.8 bits (121), Expect = 7e-08
 Identities = 13/103 (12%), Positives = 29/103 (28%), Gaps = 12/103 (11%)

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIR-SPTEIK--IHWYRNDRKLEENKI---------Y 396
              F+ R  D  V VG        +  +       + W++       +K+         Y
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 397 RTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
                   + + ++      +G + C           +  L+V
Sbjct: 64  DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 46.1 bits (109), Expect = 3e-06
 Identities = 11/53 (20%), Positives = 21/53 (39%)

Query: 76  GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
           G H    + +   ++    EL+I   +    G Y    S +  +  + F L+V
Sbjct: 54  GQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 44.6 bits (105), Expect = 9e-06
 Identities = 16/98 (16%), Positives = 26/98 (26%), Gaps = 22/98 (22%)

Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIP---TPQLIWYKDNK---KIKAGDIFALTANP 499
              F    +      G +++   +V G      P + W+K        K G    L  + 
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 500 KDPSSL---------------GTYTCEAVNCMGAAFST 522
              S +               G+Y CE         S 
Sbjct: 64  DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSN 101

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 54.2 bits (130), Expect = 6e-09
 Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 11/104 (10%)

Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG--------VVEASDKYHIMA 602
                  E +  + G +  L+C   +     S+ W    G         V  + KY ++ 
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRK-NSSLQWLTPSGFTIFLNEYPVLKNSKYQLLH 60

Query: 603 DGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
                 SI +  +   D+G +KC+  S S   +     V VL  
Sbjct: 61  HSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKE--VKVIVLAT 102

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 10/102 (9%)

Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRK---------LEENKIYRTQH 400
            +       I V+ G    L           + W               L+ +K     H
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61

Query: 401 DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
             N   I + +V+L D G + CL  +    +    ++ VL  
Sbjct: 62  SANQLSITVPNVTLQDEGVYKCLHYSDSVSTK-EVKVIVLAT 102

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 26/126 (20%)

Query: 136 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAI 195
            +       I V+ G    L          KC   L       +       IF N +  +
Sbjct: 2   GSLTNHTETITVEEGQTLTL----------KCVTSLRKNSSLQWLTPSGFTIFLNEYPVL 51

Query: 196 NRDGRTE----------LNIRRVRRDDGGRYSVTASNESGYSTAKFELSV----ESQVPD 241
            ++ + +          + +  V   D G Y     ++S  ST + ++ V    + +   
Sbjct: 52  -KNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSV-STKEVKVIVLATMKGEFCR 109

Query: 242 APAFIR 247
            P+  R
Sbjct: 110 YPSHWR 115

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 26/126 (20%)

Query: 243 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAI 302
            +       I V+ G    L          KC   L       +       IF N +  +
Sbjct: 2   GSLTNHTETITVEEGQTLTL----------KCVTSLRKNSSLQWLTPSGFTIFLNEYPVL 51

Query: 303 NRDGRTE----------LNIRRVRRDDGGRYSVTASNESGYSTAKFELSV----ESQVPD 348
            ++ + +          + +  V   D G Y     ++S  ST + ++ V    + +   
Sbjct: 52  -KNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSV-STKEVKVIVLATMKGEFCR 109

Query: 349 APAFIR 354
            P+  R
Sbjct: 110 YPSHWR 115

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 8e-09
 Identities = 79/544 (14%), Positives = 167/544 (30%), Gaps = 132/544 (24%)

Query: 581  RSIYWYNKEGVVEASDKYHIMADGLGGY--SIEINYLEAVDDGE-------WKCVATSSS 631
            + I    ++  V+  D   +  D         EI+++    D         W  ++    
Sbjct: 19   KDILSVFEDAFVDNFDCKDVQ-DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77

Query: 632  GVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEEL 691
             V++F    V  ++  NY     +  +K       +++       +     + + DN+  
Sbjct: 78   MVQKF----VEEVLRINY--KFLMSPIKTEQRQPSMMTRM-----YIEQRDRLYNDNQVF 126

Query: 692  KPGDVY------QL-TGTSSLGSYCCVAKNV----M---GKAESSTQLTIEDIRNHLSEE 737
               +V       +L      L      AKNV    +   GK    T + ++   ++   +
Sbjct: 127  AKYNVSRLQPYLKLRQALLELRP----AKNVLIDGVLGSGK----TWVALDVCLSY-KVQ 177

Query: 738  DKL------LLLTNNKAPK-FIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVV 790
             K+      L L N  +P+  +E L+     ++  +  T +   S   K+          
Sbjct: 178  CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW--TSRSDHSSNIKL---------- 225

Query: 791  ESDNVKILKETLGVCHLKIHAL----EVADQAEWK-----C---IATNDFGQSITSCFLK 838
               +++     L       + L     V +   W      C   + T    + +T  FL 
Sbjct: 226  RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF--KQVTD-FLS 282

Query: 839  LNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGD--IHKII 896
                 H      L+     L+     +L  K +      L      RE+   +     II
Sbjct: 283  AATTTHI----SLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-----REVLTTNPRRLSII 333

Query: 897  SGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKSQIE--KAEEGKKALIVKDPSLSTI 954
                                      A  +  +  +  +  K     K   + + SL+ +
Sbjct: 334  --------------------------AESIR-DGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 955  QEEGTSEIYDTPMASIEEREISFSFDGKEVSVSLYET--PDLTEEEAIKVV-EMYADELS 1011
            +     +++D    S+      F      +   L      D+ + + + VV +++   L 
Sbjct: 367  EPAEYRKMFD--RLSV------FPPSAH-IPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 1012 EHISDKNMIELPPLRFTKESSRSQNIQMEAVVIDVDHKGTTEDDDLRTDAGLDE-ISEDL 1070
            E    ++ I +P +    +        +   ++D  +   T D D      LD+     +
Sbjct: 418  EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477

Query: 1071 MLHH 1074
              HH
Sbjct: 478  G-HH 480

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 8e-05
 Identities = 58/456 (12%), Positives = 126/456 (27%), Gaps = 127/456 (27%)

Query: 96  LNIRRVRRDDG------GRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKV 149
           LN++     +               N +  S +    +++ ++    A +RRL  +  K 
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWT--SRSDHSSNIKLRIHSIQAELRRL--LKSKP 242

Query: 150 GTRARLLV--EIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRR 207
                LLV   +++       F+L+  I           +   RF+ +  D  +      
Sbjct: 243 YENC-LLVLLNVQNAKAWN-AFNLSCKI-----------LLTTRFKQVT-DFLSAATTTH 288

Query: 208 VRRDDGGRYSVTASNESGYSTAK----FELSVESQVPDAPAFIRRLHDIAVK-VGTRARL 262
           +  D          +    +  +        ++ +  D P  +   +   +  +    R 
Sbjct: 289 ISLDH---------HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR- 338

Query: 263 LVEIRSPTEIKCQFD---------LNNTIPFSFRAQGDHPIFGNRFR--AINRDGRTELN 311
                   +    +D         L   I  S     +   +   F   ++        +
Sbjct: 339 --------DGLATWDNWKHVNCDKLTTIIESSLNVL-EPAEYRKMFDRLSVFPPS---AH 386

Query: 312 I-RRVRRDDGGRYSVTASNESGYSTAKF--ELSVESQVP-DAPAFIRRLHDIAVKVGTRA 367
           I   +        S+   +           +L   S V          +  I        
Sbjct: 387 IPTIL-------LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY------- 432

Query: 368 RLLVEIRSPTEIKIH-----WYRNDRKLEENKIYRTQHDGNFYF--------------ID 408
            L ++++   E  +H      Y   +  + + +     D  FY               + 
Sbjct: 433 -LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491

Query: 409 LSSVSLFDSGRW-------TCLAENAVGRSHCSCELSVLVP-KAYKA------PFFTKEL 454
           L  +   D  R+          A NA G       L+ L   K YK       P + + +
Sbjct: 492 LFRMVFLDF-RFLEQKIRHDSTAWNASGSI-----LNTLQQLKFYKPYICDNDPKYERLV 545

Query: 455 EAI---LTEQGTVSLECKVMGIPTPQLIWYKDNKKI 487
            AI   L +     +  K   +   ++    +++ I
Sbjct: 546 NAILDFLPKIEENLICSKYTDL--LRIALMAEDEAI 579

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A Length = 323

 Score = 56.6 bits (136), Expect = 2e-08
 Identities = 44/286 (15%), Positives = 79/286 (27%), Gaps = 50/286 (17%)

Query: 455 EAILTEQGTVSLECKVMG-IPTP-QLIWYKDNKKIKAGDIFA--------------LTAN 498
           +       T+ L C V G  P   Q+ W +D + +      A              LT +
Sbjct: 18  DGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLS 77

Query: 499 PKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVE 558
            K   S  TYTC+        +         ++    N       L  P P  +F     
Sbjct: 78  QKHWLSDRTYTCQ------VTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLF----- 126

Query: 559 NVKAKIGTSAILECQV--LVPPWPR-SIYWYNKEGVVEASDKYHIMADGLGGYSIE---- 611
                I  S  + C V  L P      + W    G               G  ++     
Sbjct: 127 -----IRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLP 181

Query: 612 INYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFE 671
           +   + ++   ++C  T     +    +      P+      +  +           +  
Sbjct: 182 VGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRA-APEVYAFATPEWPGSRDKRTLA 240

Query: 672 CKVVGF-PTP-TLQWFKDNEELKPGDVYQLT-------GTSSLGSY 708
           C +  F P   ++QW  +  +L P   +  T           + S 
Sbjct: 241 CLIQNFMPEDISVQWLHNEVQL-PDARHSTTQPRKTKGSGFFVFSR 285

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 54.1 bits (129), Expect = 3e-08
 Identities = 27/205 (13%), Positives = 55/205 (26%), Gaps = 38/205 (18%)

Query: 558 ENVKAKIGTSAILECQVLVPPW------PRSIYWYNKEGVV-----------------EA 594
           ++V  + G   ++ C    P        P  +YW+    +                  E 
Sbjct: 8   KSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPET 67

Query: 595 SDKYHIMAD-GLGGYSIEINYLEAVDDGEWKCVATSSSGVKQ-FSAAYVHVLMPKNYRKP 652
             ++ ++ D      S+ I      D G +         VK  +    +++ +     KP
Sbjct: 68  QGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKP 127

Query: 653 RFVESLKAVMTDDGLVSFECKVVGF----PTPTLQWFKDNEELKPGDVY---QLTGTSSL 705
                    +         C + G     P  T  W  +       +     +LT T   
Sbjct: 128 DI--HFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPRP 185

Query: 706 ----GSYCCVAKNVMGKAESSTQLT 726
                +  C  K    +  +   + 
Sbjct: 186 EDHGTNLTCQMKRQGAQVTTERTVQ 210

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 52.1 bits (124), Expect = 2e-07
 Identities = 30/214 (14%), Positives = 54/214 (25%), Gaps = 44/214 (20%)

Query: 747 KAPKFIEGLK------SCQATVNEEFKFTVQVSISPEPKVSWFRD------DQQVVESDN 794
           +  K +   +       C  +      ++     SP   V WFRD       + V  ++ 
Sbjct: 5   QVQKSVTVQEGLCVLVPCSFSYPWRSWYS-----SPPLYVYWFRDGEIPYYAEVVATNNP 59

Query: 795 VKILKE------------TLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
            + +K                 C L I    + D   +            +    KLN+ 
Sbjct: 60  DRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLE 119

Query: 843 KHYKKPKFLEELKAVLSEGGAVNLECKVIGV----PQPTLKWFKDGRELKAGDIHKI--- 895
                 K        L  G    L C + G     P  T  W  +       +  +    
Sbjct: 120 VTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSEL 179

Query: 896 ----ISGEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
                  + G       TC+        ++   +
Sbjct: 180 TLTPRPEDHG----TNLTCQMKRQGAQVTTERTV 209

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 23/202 (11%), Positives = 50/202 (24%), Gaps = 34/202 (16%)

Query: 358 DIAVKVGTRARL-------LVEIRSPTEIKIHWYRNDRKLEENKIYRTQHD--------- 401
            + V+ G    +            S   + ++W+R+       ++  T +          
Sbjct: 9   SVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQ 68

Query: 402 GNFYF----------IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFT 451
           G F            + +    + D+G +    E      +   +  + +          
Sbjct: 69  GRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPD 128

Query: 452 KELEAILTEQGTVSLECKVM----GIPTPQLIWYKDNKKIKAGDIFA---LTANPKDPSS 504
                 L       L C +       P     W  +       +      LT  P+    
Sbjct: 129 IHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPRPEDH 188

Query: 505 LGTYTCEAVNCMGAAFSTSRVI 526
               TC+         +T R +
Sbjct: 189 GTNLTCQMKRQGAQV-TTERTV 209

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 56.3 bits (135), Expect = 4e-08
 Identities = 36/229 (15%), Positives = 69/229 (30%), Gaps = 20/229 (8%)

Query: 257 GTRARLLVEIRSPTEIKC-QF-------------DLNNTIPFSFRAQGDHPIFGNRFRAI 302
           G RA LL+      +  C  F              LN  +  +    G+ PI+       
Sbjct: 59  GQRAHLLLPQLKENDTHCIDFHYFVSSKSNSPPGLLNVYVKVNNGPLGN-PIWNISGDPT 117

Query: 303 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVK 362
               R EL I     +         ++      A  E+ V            R+ ++ V 
Sbjct: 118 RTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVN 177

Query: 363 VGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI---DLSSVSLFDSGR 419
            G  A         T      +     + +  +   +   +  FI   ++ + +  D+G+
Sbjct: 178 AGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGK 237

Query: 420 WTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLEC 468
           + C+     G    +   + LV K    P    +L ++      + L  
Sbjct: 238 YRCMIRTEGGVGISN--YAELVVKEPPVPIAPPQLASVGATYLWIQLNA 284

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 54.4 bits (130), Expect = 2e-07
 Identities = 26/170 (15%), Positives = 44/170 (25%), Gaps = 22/170 (12%)

Query: 769 TVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDF 828
            V+V+  P     W                  T     L I             + T+  
Sbjct: 97  YVKVNNGPLGNPIWNISGDP----------TRTWNRAELAISTFWPNFYQVIFEVITSGH 146

Query: 829 GQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELK 888
              +    +K+      + P FL      ++ G     +C  IG      + +  G +++
Sbjct: 147 QGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVR 206

Query: 889 --AGDIHKIISGEDGTCCL----------GIYTCEAHNCMGTTSSSAALL 926
                  K+ S                  G Y C      G   S+ A L
Sbjct: 207 DAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAEL 256

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 54.4 bits (130), Expect = 2e-07
 Identities = 23/223 (10%), Positives = 58/223 (26%), Gaps = 21/223 (9%)

Query: 619 DDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAV-MTDDGLVSFECKVVGF 677
             G +  V  S     Q +   +  L   +     F   + +   +  GL++   KV   
Sbjct: 44  PSGSFMLVNASGRPEGQRAHLLLPQLKENDTHCIDFHYFVSSKSNSPPGLLNVYVKVNNG 103

Query: 678 PTPTLQWFKD----NEELKPGDVYQLTGTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNH 733
           P     W           +          +       V  +          L I++++  
Sbjct: 104 PLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITS-----GHQGYLAIDEVK-- 156

Query: 734 LSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQQVVE 791
                  +L            +++ +    +   F              +    D +   
Sbjct: 157 -------VLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAP 209

Query: 792 SDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITS 834
              +K+      +    +      D  +++C+   + G  I++
Sbjct: 210 LKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISN 252

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 50.2 bits (119), Expect = 3e-06
 Identities = 54/439 (12%), Positives = 98/439 (22%), Gaps = 114/439 (25%)

Query: 2   GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL------------GTYTCEAVNCMGAA 49
             P    IW       +  +   L  +   P+              G    + V  +G  
Sbjct: 102 NGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHP 161

Query: 50  FSTSRVIAR-GQQSFLDNDDVPFN-RAQGDHPI---------------FGNRFRAINRDG 92
            + +    R             F   A G                           +R  
Sbjct: 162 CTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRF 221

Query: 93  RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTR 152
               N+    + D G+Y      E G   + +   V  + P   A  +            
Sbjct: 222 IASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQ------------ 269

Query: 153 ARLLVEIRSPTEIKCQFDLNNTIPFSFRAQ-GDHPIFG---------NRFRAINRDGRTE 202
               +     T +         I  +  +  GD PI             +        T 
Sbjct: 270 ----LASVGATYL--------WIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTS 317

Query: 203 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARL 262
             I  +  D     SV  +      T     ++ ++   A             +    +L
Sbjct: 318 YKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADP-----------MRGPRKL 366

Query: 263 LVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGG- 321
            V      +I  +++     PF          +        + G  E     V  D    
Sbjct: 367 EVVEVKSRQITIRWE-----PFG-YNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENS 420

Query: 322 -------------RYS--VTASNESGYSTAKFELSVESQ--VPDAPAFIRRLHDIAVKVG 364
                          S  +   N  G   ++ EL V++   +P A               
Sbjct: 421 HPQHTITNLSPYTNVSVKLILMNPEGRKESQ-ELIVQTDEDLPGAV-------------- 465

Query: 365 TRARLLVEIRSPTEIKIHW 383
                +       +I + W
Sbjct: 466 -PTESIQGSTFEEKIFLQW 483

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 44.4 bits (104), Expect = 2e-04
 Identities = 19/187 (10%), Positives = 44/187 (23%), Gaps = 21/187 (11%)

Query: 352 FIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSS 411
           F   +   +        + V++ +       W  +          RT +      + +S+
Sbjct: 79  FHYFVSSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPT------RTWNRAE---LAIST 129

Query: 412 VSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVM 471
                      +  +         E+ VL     + P F +     +      + +C  +
Sbjct: 130 FWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAI 189

Query: 472 GIPTPQLIWYKDNKKIK------------AGDIFALTANPKDPSSLGTYTCEAVNCMGAA 519
           G        +     ++               I +           G Y C      G  
Sbjct: 190 GRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVG 249

Query: 520 FSTSRVI 526
            S    +
Sbjct: 250 ISNYAEL 256

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 51.2 bits (122), Expect = 5e-08
 Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 8/103 (7%)

Query: 549 PAPIFIKEVENVKAKIGTSAILECQVL-VPPWPRSIYW-YNKEGVVEASDKYHIMADGLG 606
           P P    + E   A  G+     C        P +  W  + E + +A  + +      G
Sbjct: 9   PXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQG 68

Query: 607 GYSIE------INYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
           G  +E      +  +E   +G ++CV ++  G      A + +
Sbjct: 69  GELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 17/99 (17%), Positives = 26/99 (26%), Gaps = 20/99 (20%)

Query: 848 PKFLEELKAVL-SEGGAVNLECKVIGVPQP--TLKWFKDGRELKAGDIHKIISGEDGTCC 904
           P+   + +      G  V+  C          T  W  D   L+  ++            
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70

Query: 905 L-----------------GIYTCEAHNCMGTTSSSAALL 926
           L                 G Y C   N  G++ S  A L
Sbjct: 71  LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXL 109

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 24/101 (23%), Positives = 32/101 (31%), Gaps = 25/101 (24%)

Query: 652 PRFVESLKAVMTDDGL-VSFECKVVGFPTP--TLQWFKDNEELKPGDVYQ---------- 698
           P+     +      G  VSF C          T  W  DNE L+  ++            
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70

Query: 699 -LTGTSSL----------GSYCCVAKNVMGKAESST-QLTI 727
            +  T+ L          G Y CV  N  G + S    LTI
Sbjct: 71  LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 43.1 bits (101), Expect = 4e-05
 Identities = 15/102 (14%), Positives = 39/102 (38%), Gaps = 10/102 (9%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVS--WFRDDQQVVESDNVKILKE------ 800
           P+     ++  A    +  FT   + S +  ++  W  D++ + +++             
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70

Query: 801 -TLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
                  L++  +E   +  ++C+ +N FG S +     L +
Sbjct: 71  LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXA-XLTI 111

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 42.8 bits (100), Expect = 5e-05
 Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 20/95 (21%)

Query: 448 PFFTKELEAILTEQG-TVSLECKVMGIPTPQL--IWYKDNKKIKAGDIF----------- 493
           P  T + E      G  VS  C         +   W  DN+ ++  ++            
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70

Query: 494 ------ALTANPKDPSSLGTYTCEAVNCMGAAFST 522
                  L     + +S G Y C   N  G+++S 
Sbjct: 71  LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSV 105

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 11/101 (10%)

Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRS--PTEIKIHWYRNDRKLEENKIYRTQH---DGNF 404
           P    +    +   G+         S   + +   W  ++  L++ ++    H    G  
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70

Query: 405 YFID-----LSSVSLFDSGRWTCLAENAVGRSHCSC-ELSV 439
                    L +V     G + C+  N  G S+     L++
Sbjct: 71  LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 54.5 bits (130), Expect = 7e-08
 Identities = 33/301 (10%), Positives = 74/301 (24%), Gaps = 44/301 (14%)

Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEA 617
             V    G S ++ C       P+ +             K  ++  G      E++ ++ 
Sbjct: 7   SKVILPRGGSVLVTCSTSCDQ-PKLLGIETPLP------KKELLLPGNNRKVYELSNVQ- 58

Query: 618 VDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVG- 676
            +D +  C +    G             P+       +  L +       ++  C+V G 
Sbjct: 59  -EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVE----LAPLPSWQPVGKNLTLRCQVEGG 113

Query: 677 --FPTPTLQWFKDNEELKPGDVYQLTGTSSL----------GSYCCVAKNVMGKAESSTQ 724
                 T+   +  +ELK           +            ++ C  +  +        
Sbjct: 114 APRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELF 173

Query: 725 LTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQ-ATVNEEFKFTVQVSISP---EPKV 780
                             L     P     L S +   V+ +      +       E +V
Sbjct: 174 ENTSAPYQ----------LQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQV 223

Query: 781 SWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLN 840
                DQ++    N  +             ++   D+   +       G         + 
Sbjct: 224 HLALGDQRL----NPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVT 279

Query: 841 V 841
           +
Sbjct: 280 I 280

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 52.6 bits (125), Expect = 3e-07
 Identities = 38/298 (12%), Positives = 85/298 (28%), Gaps = 35/298 (11%)

Query: 154 RLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDG 213
           ++++       + C    +                  +   +  + R    +  V+ D  
Sbjct: 8   KVILPRGGSVLVTCSTSCDQPKLLGIETP-----LPKKELLLPGNNRKVYELSNVQED-- 60

Query: 214 GRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIK 273
            +    ++   G STAK  L+V    P+              VG              ++
Sbjct: 61  SQPMCYSNCPDGQSTAKTFLTVY-WTPERV--ELAPLPSWQPVGK----------NLTLR 107

Query: 274 CQFDLNNTIPFSFRA--QGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNES 331
           CQ +             +G+  +       +         +   R   G  +S     + 
Sbjct: 108 CQVEGGAPRANLTVVLLRGEKELKREPA--VGEPAEVTTTVLVRRDHHGANFSCRTELDL 165

Query: 332 GYSTAKFELSVES----QVPDAPAFIRRL-HDIAVKVGTRARLLVEIRS---PTEIKIHW 383
                +   +  +    Q    PA   +L     ++V T+  ++  +      +E ++H 
Sbjct: 166 RPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHL 225

Query: 384 YRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV 441
              D++L       T  + +F      SV+  D G         +G        +V +
Sbjct: 226 ALGDQRLNPT---VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI 280

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 52.2 bits (124), Expect = 3e-07
 Identities = 39/295 (13%), Positives = 73/295 (24%), Gaps = 46/295 (15%)

Query: 455 EAILTEQGTVSLECKVMGIPTPQLIWYK--DNKKIKAGDIFALTANPKDPSSLGTYTCEA 512
           + IL   G+V + C         L        K++             +        C +
Sbjct: 8   KVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYS 67

Query: 513 VNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILEC 572
            NC     +                         P    +           +G +  L C
Sbjct: 68  -NCPDGQSTAK---------------TFLTVYWTPERVEL---APLPSWQPVGKNLTLRC 108

Query: 573 QVL-VPPWPR-SIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVAT-- 628
           QV    P    ++     E  ++        A+     +  +          + C     
Sbjct: 109 QVEGGAPRANLTVVLLRGEKELKREPAVGEPAEV----TTTVLVRRDHHGANFSCRTELD 164

Query: 629 -SSSGVKQFSAAYVHVLMPKNYRKPRFVESL--KAVMTDDGLVSFECKVVG-FPTPTLQ- 683
               G++ F        +      P     L    V+  D   +  C + G FP    Q 
Sbjct: 165 LRPQGLELFENTSAPYQLQTFV-LPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQV 223

Query: 684 -WFKDNEELKP-----GDVYQLTGTSSL-----GSYCCVAKNVMGKAESSTQLTI 727
                ++ L P      D +    + S+     G+       ++G     T  T+
Sbjct: 224 HLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTV 278

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 47.9 bits (113), Expect = 8e-06
 Identities = 30/175 (17%), Positives = 55/175 (31%), Gaps = 35/175 (20%)

Query: 771 QVSISPEPKVSWFRDDQQV---VESDNVK--ILKETLG-------VCHLKIHALE-VADQ 817
           Q S+SP   +        V      D  K   ++  L          + K++ L  V + 
Sbjct: 1   QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQED 60

Query: 818 AEWKCIATNDFGQSITSCFLKLNVPKHYKKPKF--LEELKAVLSEGGAVNLECKVIGV-- 873
           ++  C +    GQS    FL +        P+   L  L +    G  + L C+V G   
Sbjct: 61  SQPMCYSNCPDGQSTAKTFLTVYWT-----PERVELAPLPSWQPVGKNLTLRCQVEGGAP 115

Query: 874 -PQPTLKWFKDGRELKAGDIHK---------IISGEDGTCCLGIYTCEAHNCMGT 918
               T+   +  +ELK               ++  +        ++C     +  
Sbjct: 116 RANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHH---GANFSCRTELDLRP 167

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 11/97 (11%)

Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG--------VVEASDKYHIMADGLGGYS 609
           +NV    G +AIL C+V       S+ W N                ++  ++       S
Sbjct: 14  QNVTVVEGGTAILTCRVDQND-NTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELS 72

Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
           I ++ +   D+G++ C   +         AY+ VL  
Sbjct: 73  ISVSDVSLSDEGQYTCSLFTMPVKTSK--AYLTVLGV 107

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 10/108 (9%)

Query: 344 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKL---------EENK 394
           S+V  +        ++ V  G  A L   +       + W    ++           +N+
Sbjct: 1   SKVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNR 60

Query: 395 IYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
           I   +   +   I +S VSL D G++TC       ++     L+VL  
Sbjct: 61  IELVRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTS-KAYLTVLGV 107

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.0 bits (130), Expect = 2e-07
 Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 9/77 (11%)

Query: 858 LSEGGAVNLECKVIGVPQPTLKWFKD-GRELKAGDIHKIISGEDGTCCL--------GIY 908
           + EG  V   C+  G P P + W       + A    ++    DGT  +        G Y
Sbjct: 397 VDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTY 456

Query: 909 TCEAHNCMGTTSSSAAL 925
            C A N  G  S  A L
Sbjct: 457 LCIAANAGGNDSMPAHL 473

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 13/73 (17%)

Query: 668 VSFECKVVGFPTPTLQWFKDNEEL---KPGDVYQLTGTSSL----------GSYCCVAKN 714
           V F C+  G P P + W    + L   K      +    +L          G+Y C+A N
Sbjct: 403 VQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAAN 462

Query: 715 VMGKAESSTQLTI 727
             G       L +
Sbjct: 463 AGGNDSMPAHLHV 475

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 9/116 (7%)

Query: 531 QSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG 590
           + F D  DV   +      A I  ++ + V    G +    C+    P P +I W +   
Sbjct: 366 KEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPP-AILWLSPRK 424

Query: 591 VV---EASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
            +   +++ +  +  DG    ++E+ Y +  D+G + C+A ++ G      A++HV
Sbjct: 425 HLVSAKSNGRLTVFPDG----TLEVRYAQVQDNGTYLCIAANAGGNDSMP-AHLHV 475

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 6/100 (6%)

Query: 343 ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI---YRTQ 399
                 A    R+   + V  G   + +          I W    + L   K        
Sbjct: 379 YFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVF 438

Query: 400 HDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
            DG    +++    + D+G + C+A NA G       L V
Sbjct: 439 PDG---TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 10/91 (10%)

Query: 445 YKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD-- 501
            +A    ++ + +  ++G TV   C+  G P P ++W    K + +           D  
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT 442

Query: 502 -------PSSLGTYTCEAVNCMGAAFSTSRV 525
                      GTY C A N  G     + +
Sbjct: 443 LEVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 6e-04
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 9/87 (10%)

Query: 758 CQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESD---NVKILKETLGVCHLKIHALEV 814
                    +F  +    P P + W    + +V +     + +  +  G   L++   +V
Sbjct: 395 VFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPD--GT--LEVRYAQV 450

Query: 815 ADQAEWKCIATNDFGQSITSCFLKLNV 841
            D   + CIA N  G    S    L+V
Sbjct: 451 QDNGTYLCIAANAGGN--DSMPAHLHV 475

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 48.8 bits (116), Expect = 4e-07
 Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 17/112 (15%)

Query: 341 SVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI----- 395
           S  S        +  L D+ V  G  A   +++   T I+  W+ N  +L+ N+      
Sbjct: 2   SSGSSGT--ARLVAGLEDVQVYDGEDAVFSLDL--STIIQGTWFLNGEELKSNEPEGQVE 57

Query: 396 -----YRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
                YR +  G  + + L +V   DSG        +      S  L++   
Sbjct: 58  PGALRYRIEQKGLQHRLILHAVKHQDSGALVGF---SCPGVQDSAALTIQES 106

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 12/89 (13%)

Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETL----- 802
             + + GL+  Q    E+  F++ +S     + +WF + +++  ++    ++        
Sbjct: 8   TARLVAGLEDVQVYDGEDAVFSLDLS--TIIQGTWFLNGEELKSNEPEGQVEPGALRYRI 65

Query: 803 ---GVCH-LKIHALEVADQ-AEWKCIATN 826
              G+ H L +HA++  D  A        
Sbjct: 66  EQKGLQHRLILHAVKHQDSGALVGFSCPG 94

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.1 bits (125), Expect = 8e-07
 Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 9/106 (8%)

Query: 338 FELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYR 397
            E+   S    AP  +    D+ +  G  A L  + R+P    + W   +  +  +    
Sbjct: 341 VEVDQASFQCSAPFIMDAPRDLNISEGRMAEL--KCRTPPMSSVKWLLPNGTVLSHASRH 398

Query: 398 TQ----HDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
            +    +DG    ++ S V L D+G +TC+  N  G S+ S  L+V
Sbjct: 399 PRISVLNDGT---LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 12/78 (15%)

Query: 858 LSEGGAVNLECKVIGVPQPTLKWFKDGREL--KAGDIHKIISGEDGTCCL--------GI 907
           +SEG    L+C+    P  ++KW      +   A    +I    DGT           G+
Sbjct: 364 ISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGV 421

Query: 908 YTCEAHNCMGTTSSSAAL 925
           YTC   N  G +++SA L
Sbjct: 422 YTCMVTNVAGNSNASAYL 439

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.3 bits (110), Expect = 5e-05
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGY 608
            AP  +    ++    G  A L+C+   PP   S+ W    G V +    H     L   
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRT--PPMS-SVKWLLPNGTVLSHASRHPRISVLNDG 407

Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
           ++  +++   D G + C+ T+ +G    ++AY++V
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAG-NSNASAYLNV 441

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 26/120 (21%), Positives = 39/120 (32%), Gaps = 11/120 (9%)

Query: 124 FELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG 183
            E+   S    AP  +    D+ +  G  A L       + +K        +        
Sbjct: 341 VEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCRTPPMSSVKWLLPNGTVL-------- 392

Query: 184 DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 243
            H     R   +  DG T LN   V   D G Y+   +N +G S A   L+V +      
Sbjct: 393 SHASRHPRIS-VLNDG-T-LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHH 449

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 26/120 (21%), Positives = 39/120 (32%), Gaps = 11/120 (9%)

Query: 231 FELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG 290
            E+   S    AP  +    D+ +  G  A L       + +K        +        
Sbjct: 341 VEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCRTPPMSSVKWLLPNGTVL-------- 392

Query: 291 DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 350
            H     R   +  DG T LN   V   D G Y+   +N +G S A   L+V +      
Sbjct: 393 SHASRHPRIS-VLNDG-T-LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHH 449

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 51.7 bits (124), Expect = 8e-07
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 8/107 (7%)

Query: 338 FELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIY- 396
            EL        AP  +    D+ V  G  A L     +     + W   +  +  +  Y 
Sbjct: 330 GELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRASTS-LTSVSWITPNGTVMTHGAYK 388

Query: 397 ---RTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
                  DG    ++ ++V++ D+G +TC+  N+VG +  S  L+V 
Sbjct: 389 VRIAVLSDGT---LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVT 432

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 3/96 (3%)

Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGY 608
            AP+ ++   ++    G +A L+C+        S+ W    G V     Y +    L   
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRASTSLT--SVSWITPNGTVMTHGAYKVRIAVLSDG 397

Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL 644
           ++    +   D G + C+ ++S G    ++A ++V 
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVG-NTTASATLNVT 432

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.5 bits (108), Expect = 6e-05
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 11/78 (14%)

Query: 858 LSEGGAVNLECKVIGVPQPTLKWFKDGREL--KAGDIHKIISGEDGTCCL--------GI 907
           ++EG A  L+C+       ++ W      +        +I    DGT           G+
Sbjct: 353 VTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGM 411

Query: 908 YTCEAHNCMGTTSSSAAL 925
           YTC   N +G T++SA L
Sbjct: 412 YTCMVSNSVGNTTASATL 429

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.0 bits (99), Expect = 9e-04
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 7/95 (7%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVV--ESDNVKILKETLGVCH 806
           P  +E       T     +   + S +    VSW   +  V+   +  V+I   + G   
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRAS-TSLTSVSWITPNGTVMTHGAYKVRIAVLSDGT-- 398

Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
           L    + V D   + C+ +N  G   T+    LNV
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGN--TTASATLNV 431

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 8/75 (10%)

Query: 859 SEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL--------GIYTC 910
             G  + + C         +       ++ +   +  +S  +G            G+YTC
Sbjct: 259 HLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTC 318

Query: 911 EAHNCMGTTSSSAAL 925
            A       + S  L
Sbjct: 319 YAMGETFNETLSVEL 333

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 16/108 (14%)

Query: 459 TEQGTVSLECKVMGIPTPQLIWYKDNKKIKA-----------GDIFALTANPKDPSSLGT 507
               T+++ C        ++     N+++ +           GD+F      +D    G 
Sbjct: 259 HLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDG---GV 315

Query: 508 YTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIK 555
           YTC A+        T  V  +     L       N+   P   P F K
Sbjct: 316 YTCYAMGETFNE--TLSVELKVYNFTLHGHHDTLNAAADPWSHPQFEK 361

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 10/72 (13%), Positives = 18/72 (25%), Gaps = 12/72 (16%)

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPG--DVYQLTGTSSL----------GSYCCVAKNV 715
           ++  C         +     NE++     +         L          G Y C A   
Sbjct: 264 LTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGE 323

Query: 716 MGKAESSTQLTI 727
                 S +L +
Sbjct: 324 TFNETLSVELKV 335

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.7 bits (103), Expect = 3e-04
 Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 355 RLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKL--EENKIYRTQHDGNFYFIDLSSV 412
           +       +G    +  + +     K+    ++ ++  + +    +  +G+   +    V
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGD---LFFKKV 308

Query: 413 SLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
            + D G +TC A         S EL V   
Sbjct: 309 QVEDGGVYTCYAMGETFNETLSVELKVYNF 338

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 49.1 bits (116), Expect = 1e-06
 Identities = 33/172 (19%), Positives = 54/172 (31%), Gaps = 42/172 (24%)

Query: 371 VEIRSPTE--IKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVS-LFDSGRWTCLAENA 427
           VE+  P +    + W +N ++L            +   + L   S + DSG + C    +
Sbjct: 17  VELTCPLDSDENLKWEKNGQEL---------PQKHDKHLVLQDFSEVEDSGYYVCYTPAS 67

Query: 428 VGRSHCSCELSVLVPKAYKAPFFTKELEA---------------------ILTEQGTVSL 466
              ++   +  V      K     K+                             G+V L
Sbjct: 68  NKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLL 127

Query: 467 ECKVMGIPTPQLIWYKDNKKIKAGD----IFALTANPKDPSSLGTYTCEAVN 514
            C   G+    + W KD   I   +     + L  N KDP   GTY C+   
Sbjct: 128 TC---GLTDKTIKWLKDGSIISPLNATKNTWNLGNNAKDPR--GTYQCQGAK 174

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 32/184 (17%), Positives = 56/184 (30%), Gaps = 46/184 (25%)

Query: 764 EEFKFTVQVS---------ISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHAL-E 813
           E  ++ V +S         +  +  + W ++ Q++ +  +           HL +    E
Sbjct: 4   ENIEYKVSISGTSVELTCPLDSDENLKWEKNGQELPQKHD----------KHLVLQDFSE 53

Query: 814 VADQAEWKCIATN--------------DFGQSITSCFLKLNVPKHYKKPKFLEELKAVL- 858
           V D   + C                      +      K +  K   K    +  KA   
Sbjct: 54  VEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNL 113

Query: 859 ------SEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKII--SGEDGTCCLGIYTC 910
                    G+V L C   G+   T+KW KDG  +   +  K     G +     G Y C
Sbjct: 114 VQVDGSRGDGSVLLTC---GLTDKTIKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQC 170

Query: 911 EAHN 914
           +   
Sbjct: 171 QGAK 174

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 47.4 bits (112), Expect = 1e-06
 Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 9/104 (8%)

Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPR-SIYWY-------NKEGVVEASDKYHIMA 602
            + +     ++  +G   +L C             W        +K+ V           
Sbjct: 9   DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSE 68

Query: 603 DGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
                 ++ I+ +   D G + C A+S    K+ S  +V V   
Sbjct: 69  MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNS-TFVRVHEK 111

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 46.7 bits (110), Expect = 3e-06
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 5/105 (4%)

Query: 143 HDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE 202
           H I + VG +  L    R+   +   F+           +  +     +  +  +   + 
Sbjct: 16  HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 75

Query: 203 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 247
           L I  V R D G Y+  AS+          + V         F+ 
Sbjct: 76  LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH-----EKPFVA 115

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 46.7 bits (110), Expect = 3e-06
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 5/105 (4%)

Query: 250 HDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE 309
           H I + VG +  L    R+   +   F+           +  +     +  +  +   + 
Sbjct: 16  HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 75

Query: 310 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 354
           L I  V R D G Y+  AS+          + V         F+ 
Sbjct: 76  LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH-----EKPFVA 115

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 46.7 bits (110), Expect = 3e-06
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 10/96 (10%)

Query: 357 HDIAVKVGTRARL--LVEIRSPTEIKIHWYRNDRKLEENKIYR--------TQHDGNFYF 406
           H I + VG +  L           I  +W     K +  K+          ++       
Sbjct: 16  HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 75

Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
           + +  V+  D G +TC A + +     S  + V   
Sbjct: 76  LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK 111

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 43.2 bits (101), Expect = 4e-05
 Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 5/52 (9%)

Query: 89  NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR 140
            +   + L I  V R D G Y+  AS+          + V         F+ 
Sbjct: 69  MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH-----EKPFVA 115

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 42.8 bits (100), Expect = 6e-05
 Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 19/87 (21%)

Query: 858 LSEGGAVNLECKVIGVPQP--TLKWFKDGRELKAGDIHKIIS-------GEDGTCCL--- 905
           LS G  + L C             W     + +   +             +     L   
Sbjct: 20  LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTID 79

Query: 906 -------GIYTCEAHNCMGTTSSSAAL 925
                  G+YTC A + + T  +S  +
Sbjct: 80  GVTRSDQGLYTCAASSGLMTKKNSTFV 106

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 10/85 (11%), Positives = 24/85 (28%), Gaps = 23/85 (27%)

Query: 668 VSFECKVVGFPTPTLQ--WFKDNEELKPGDV-----------YQLTGTSSL--------- 705
           +   C         +   W   + + +   +                 S+L         
Sbjct: 26  LVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSD 85

Query: 706 -GSYCCVAKNVMGKAESSTQLTIED 729
            G Y C A + +   ++ST + + +
Sbjct: 86  QGLYTCAASSGLMTKKNSTFVRVHE 110

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 40.1 bits (93), Expect = 5e-04
 Identities = 10/93 (10%), Positives = 28/93 (30%), Gaps = 9/93 (9%)

Query: 759 QATVNEEFKFTVQVSISPEPKVSWFRD---------DQQVVESDNVKILKETLGVCHLKI 809
           + +V E+              + +  +              +       +    +  L I
Sbjct: 19  ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTI 78

Query: 810 HALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
             +  +DQ  + C A++       S F++++  
Sbjct: 79  DGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK 111

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 39.3 bits (91), Expect = 8e-04
 Identities = 13/83 (15%), Positives = 23/83 (27%), Gaps = 19/83 (22%)

Query: 463 TVSLECKVMGIPTP--QLIWYKDNKKIKAGDIFALTANP-------KDPSSL-------- 505
            + L C             W   + K +   +              K  S+L        
Sbjct: 25  KLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS 84

Query: 506 --GTYTCEAVNCMGAAFSTSRVI 526
             G YTC A + +    +++ V 
Sbjct: 85  DQGLYTCAASSGLMTKKNSTFVR 107

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 24/141 (17%), Positives = 46/141 (32%), Gaps = 16/141 (11%)

Query: 382 HWYRNDR--KLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
              + +     +       ++   F      S++   +GR+ C   + VG S  S  L +
Sbjct: 36  RLDKEESPAPWDRQNPLEPKNKARFSI---PSMTEDYAGRYRCYYRSPVGWSQPSDPLEL 92

Query: 440 LVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKI----------KA 489
           ++  AY  P  +     ++T   +V+L C+    P    +  K+                
Sbjct: 93  VMTGAYSKPTLSALPSPLVTSGKSVTLLCQS-RSPMDTFLLCKERAAHPLLCLRSEHGAQ 151

Query: 490 GDIFALTANPKDPSSLGTYTC 510
                   +P      GTY C
Sbjct: 152 QHQAEFPMSPVTSVHGGTYRC 172

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 49.5 bits (117), Expect = 3e-06
 Identities = 26/200 (13%), Positives = 47/200 (23%), Gaps = 33/200 (16%)

Query: 545 MPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADG 604
           + P   P        + +  G S  L C  + P    +++W         S         
Sbjct: 1   LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWV-LRKPAAGSHPSRWAGM- 58

Query: 605 LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTD 664
             G  + +  ++  D G + C              ++ V +P     P   +      + 
Sbjct: 59  --GRRLLLRSVQLHDSGNYSCYRAGRP----AGTVHLLVDVP-----PEEPQLSCFRKSP 107

Query: 665 DGLVSFECKVV---GFPTP-TLQWFKDNEELKPGDVYQLTGTSSLGSYCC---------- 710
              V  E          T   L   K               +     + C          
Sbjct: 108 LSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSS 167

Query: 711 ------VAKNVMGKAESSTQ 724
                    + +G   S TQ
Sbjct: 168 FYIVSMCVASSVGSKFSKTQ 187

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 43.3 bits (101), Expect = 3e-04
 Identities = 27/169 (15%), Positives = 45/169 (26%), Gaps = 18/169 (10%)

Query: 346 VPDAPAFIRRLHDIAVKVGTRARLL-VEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNF 404
               PA       +    G    L    +       +HW         +           
Sbjct: 3   PRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRR- 61

Query: 405 YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTV 464
             + L SV L DSG ++C      GR   +  L V VP     P   +      +    V
Sbjct: 62  --LLLRSVQLHDSGNYSCYRA---GRPAGTVHLLVDVP-----PEEPQLSCFRKSPLSNV 111

Query: 465 SLECKVM---GIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTC 510
             E        + T  ++  +  +   A D        +       ++C
Sbjct: 112 VCEWGPRSTPSLTTKAVLLVRKFQNSPAEDF---QEPCQYSQESQKFSC 157

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 45/268 (16%), Positives = 79/268 (29%), Gaps = 43/268 (16%)

Query: 668 VSFECKVVGF-PTPTLQWFKDNEELKPGDVYQLTGTSSLGSYCCVAKNVMGKAESSTQLT 726
               C V    P   +QWF+       G   +L      G +  V          +   +
Sbjct: 21  AILHCTVTSLIPVGPIQWFRG-----AGPARELIYNQKEGHFPRVTTVSESTKRENMDFS 75

Query: 727 IEDIRNHLSEED----------------------KLLLLTNNKAPKFIEGLKSCQATVNE 764
           I  I N ++  D                         L    K    +    + +AT   
Sbjct: 76  IS-ISN-ITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQH 133

Query: 765 EFKFTVQVS-ISPEP-KVSWFRDDQQVVESDNVKILKETL------GVCHLKIHALEVAD 816
              FT +    SP    + WF++  ++  SD    +               K+       
Sbjct: 134 TVSFTCESHGFSPRDITLKWFKNGNEL--SDFQTNVDPVGESVSYSIHSTAKVVLTREDV 191

Query: 817 QAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGV-PQ 875
            ++  C   +   Q         N+ +  + P  LE  +  +     VN+ C+V    PQ
Sbjct: 192 HSQVICEVAHVTLQG-DPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQ 250

Query: 876 P-TLKWFKDGRELKAGDIHKIISGEDGT 902
              L W ++G   +      +   +DGT
Sbjct: 251 RLQLTWLENGNVSRTETASTVTENKDGT 278

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 31/237 (13%), Positives = 64/237 (27%), Gaps = 40/237 (16%)

Query: 310 LNIRRVRRDDGGRYSVTASNESGYSTAKF----ELSVESQVPDAPAFIRRLHDIAVKVGT 365
           ++I  +   D G Y        G    +F       +  +   +   +      A    T
Sbjct: 76  ISISNITPADAGTYYC-VKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHT 134

Query: 366 RARL--LVEIRSPTEIKIHWYRNDRKLEENKI-YRTQHDGNFYFIDLSSVSLFDSGRW-- 420
                      SP +I + W++N  +L + +       +   Y   + S +     R   
Sbjct: 135 -VSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYS--IHSTAKVVLTREDV 191

Query: 421 ----TCLAENAVGRS---HCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMG- 472
                C   +   +      +  LS  +          + +      +  V++ C+V   
Sbjct: 192 HSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVR----AENQVNVTCQVRKF 247

Query: 473 IPTP-QLIWYKDNKKIKAGDIFA--------------LTANPKDPSSLGTYTCEAVN 514
            P   QL W ++    +                    L  N          TC+  +
Sbjct: 248 YPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEH 304

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 37/237 (15%), Positives = 60/237 (25%), Gaps = 26/237 (10%)

Query: 196 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELS--VESQVPDA--PAFIRRLHD 251
            R  +   N+  V     G Y+   S+     T     S  V   V        +     
Sbjct: 69  GRIFQESFNMSPVTTAHAGNYTCRGSH-PHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPG 127

Query: 252 IAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELN 311
             VK G R    V ++      C  D+     F  +            +  +   +   +
Sbjct: 128 PLVKSGER----VILQ------CWSDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFS 177

Query: 312 IRRVRRDDGGRYSVTASNE------SGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGT 365
           I  +     G Y    S        S  S    ++ V    P     +       V+ G 
Sbjct: 178 IGPMMLALAGTYRCYGSVTHTPYQLSAPS-DPLDIVV--TGPYEKPSLSAQPGPKVQAGE 234

Query: 366 RARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTC 422
              L    RS      H  R      E ++   +     +  D         G + C
Sbjct: 235 SVTLSCSSRSSY-DMYHLSREGGA-HERRLPAVRKVNRTFQADFPLGPATHGGTYRC 289

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 39/229 (17%), Positives = 65/229 (28%), Gaps = 29/229 (12%)

Query: 303 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELS--VESQVPDA--PAFIRRLHD 358
            R  +   N+  V     G Y+   S+     T     S  V   V        +     
Sbjct: 69  GRIFQESFNMSPVTTAHAGNYTCRGSH-PHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPG 127

Query: 359 IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDG----NFYFIDLSSVSL 414
             VK G R  L        E     ++     + +++    HDG    NF    +  + L
Sbjct: 128 PLVKSGERVILQCWSDIMFE-HFFLHKEGISKDPSRLVGQIHDGVSKANFS---IGPMML 183

Query: 415 FDSGRWTCLAENA---VGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVM 471
             +G + C           S  S  L ++V   Y+ P  + +    +    +V+L C   
Sbjct: 184 ALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSC-SS 242

Query: 472 GIPTPQLIWYKDNK---------KIKAGDIFAL-TANPKDPSSLGTYTC 510
                     ++           +       A     P      GTY C
Sbjct: 243 RSSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPATHG--GTYRC 289

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 24/180 (13%), Positives = 47/180 (26%), Gaps = 8/180 (4%)

Query: 303 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVK 362
            R  + +  I  +     G+YS        +S     L +          +       V 
Sbjct: 55  ERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVI 114

Query: 363 VGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTC 422
            G +      + + T +     +  R     + Y  +    F    L  V+    G + C
Sbjct: 115 SGEKVTFYCRLDTATSM-FLLLKEGRSSHVQRGYG-KVQAEFP---LGPVTTAHRGTYRC 169

Query: 423 LAENAVGR-SHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVM-GIPTPQLIW 480
                    S  S  + +LV    +      E +         +       G+     +W
Sbjct: 170 FGSYNNHAWSFPSEPVKLLVTGDIENTSLAPE-DPTFPADTWGTYLLTTETGLQKDHALW 228

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 10/149 (6%)

Query: 374 RSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHC 433
           +   E + +    +   E           N     + S++   +GR+ C   +  G S  
Sbjct: 27  QGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEP 86

Query: 434 SCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIP---------TPQLIWYKDN 484
           S  L ++V   Y  P  +     ++T    V+L+C                 +L W  D+
Sbjct: 87  SDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRFDRFILTEEGDHKLSWTLDS 146

Query: 485 KKIKAGDIFA-LTANPKDPSSLGTYTCEA 512
           +   +G   A     P  PS      C  
Sbjct: 147 QLTPSGQFQALFPVGPVTPSHRWMLRCYG 175

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 16/134 (11%)

Query: 382 HWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV 441
              +      +++          +     ++    +GR+ C  +N    S  S +L ++ 
Sbjct: 39  RLEKLSSSRYQDQ-------AVLFI---PAMKRSLAGRYRCSYQNGSLWSLPSDQLELVA 88

Query: 442 PKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK-----AGDIFALT 496
              +  P  + +    ++  G V+L+C+       Q   YK+               +  
Sbjct: 89  TGVFAKPSLSAQPGPAVSSGGDVTLQCQ-TRYGFDQFALYKEGDPAPYKNPERWYRASFP 147

Query: 497 ANPKDPSSLGTYTC 510
                 +  GTY C
Sbjct: 148 IITVTAAHSGTYRC 161

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 44.7 bits (105), Expect = 5e-05
 Identities = 24/151 (15%), Positives = 44/151 (29%), Gaps = 20/151 (13%)

Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEA 617
                + G S  L C    P  P            E S + +    GL   + ++  +  
Sbjct: 10  RVAFVERGGSLWLNCSTNCPR-PERGGL-------ETSLRRNGTQRGLRWLARQLVDIRE 61

Query: 618 VDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVE--SLKAVMTDDGLVSFECKVV 675
             + +  C    +    Q   A   +     +++P  VE   L          +  C+V 
Sbjct: 62  -PETQPVCFFRCARRTLQ---ARGLIRT---FQRPDRVELMPLPPWQPVGENFTLSCRVP 114

Query: 676 G---FPTPTLQWFKDNEELKPGDVYQLTGTS 703
           G     + TL   +  +EL           +
Sbjct: 115 GAGPRASLTLTLLRGAQELIRRSFAGEPPRA 145

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 44.5 bits (104), Expect = 5e-05
 Identities = 21/144 (14%), Positives = 36/144 (25%), Gaps = 18/144 (12%)

Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEA 617
             V   +G S  L C++       S+ W   +  + A           G   + +     
Sbjct: 15  PVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQ------SDTGRSVLTVRNASL 68

Query: 618 VDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGF 677
              G   CV +      Q     + V     Y  P  +    A +   G     C     
Sbjct: 69  SAAGTRVCVGSCGGRTFQ-HTVQLLV-----YAFPNQLTVSPAALV-PGDPEVACTAHKV 121

Query: 678 P-----TPTLQWFKDNEELKPGDV 696
                   +       +EL+    
Sbjct: 122 TPVDPNALSFSLLVGGQELEGAQA 145

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 43.2 bits (101), Expect = 6e-05
 Identities = 20/121 (16%), Positives = 34/121 (28%), Gaps = 11/121 (9%)

Query: 534 LDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG--- 590
           L  DD                    +     G + +L+CQV          W N      
Sbjct: 22  LGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQ-WSNPAQQTL 80

Query: 591 -----VVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLM 645
                     ++  ++       SI I+ +   D+GE+ C   +         + V VL 
Sbjct: 81  YFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTMPVRTAK--SLVTVLG 138

Query: 646 P 646
            
Sbjct: 139 I 139

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 40.2 bits (93), Expect = 7e-04
 Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 10/132 (7%)

Query: 320 GGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEI 379
             ++     +     T   + ++               D  V  G    L  +++   + 
Sbjct: 9   AAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDS 68

Query: 380 KIHWYRNDRKL---------EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGR 430
            + W    ++           +N+I       +   I +S+V+L D G +TC       R
Sbjct: 69  SLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTMPVR 128

Query: 431 SHCSCELSVLVP 442
           +     ++VL  
Sbjct: 129 TA-KSLVTVLGI 139

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 45.8 bits (108), Expect = 7e-05
 Identities = 32/248 (12%), Positives = 66/248 (26%), Gaps = 54/248 (21%)

Query: 358 DIAVKVGTRARL-------LVEIRSPTEIKIHWYRNDRKLEENKIYRTQ-HDGNFYFIDL 409
              V++ +            ++        I W  N   + + +         +  F D+
Sbjct: 12  SPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDI 71

Query: 410 SSVSLFDSGRWTC--LAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLE 467
           +S     + + TC  L    + ++     +   +P     P   K L  I+ E   +  E
Sbjct: 72  AS----LNIQLTCNILTFGQLEQNVYGITIISGLP-----PEKPKNLSCIVNEGKKMRCE 122

Query: 468 CKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL-----------GTYTCEAVNCM 516
               G  T     +    +          A    P+S                 EA N +
Sbjct: 123 WDG-GRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENAL 181

Query: 517 GAAFSTSRVIARGQQSFLDNDDVPFNSLMPPG-PAPIFIKEVENVKAKI---------GT 566
           G   S         +             + P  P  + +   E + + +          +
Sbjct: 182 GKVTSDHINFDPVYK-------------VKPNPPHNLSVINSEELSSILKLTWTNPSIKS 228

Query: 567 SAILECQV 574
             IL+  +
Sbjct: 229 VIILKYNI 236

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 42.6 bits (100), Expect = 7e-05
 Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 13/112 (11%)

Query: 554 IKEVENVKAKIGTSAILECQVLVPP-------W---PRSIYWYNKEGVVEASDKYHIMAD 603
           I+   N+ A+ G S IL+C +           W    + +   N +     S  +     
Sbjct: 7   IETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVA 66

Query: 604 GLGGYSIEINYLEAVDDGEWKC-VATSSSGVKQFSAAYVHVL-MPKNYRKPR 653
              G  + +  L   D GE+ C   T   G       ++ VL         R
Sbjct: 67  PGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYT-GRIFLEVLESSVAEHGAR 117

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 20/106 (18%), Positives = 29/106 (27%), Gaps = 26/106 (24%)

Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFP---TPTLQWFKDN---EELKPGDVYQL----- 699
             F++   +V  + G       KV G      PT++WFK        K G  +       
Sbjct: 13  GVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHN 72

Query: 700 ----TGTSSL----------GSYCCVAKNVMGKAESSTQLTIEDIR 731
                 T  L          G Y    K           + +E  R
Sbjct: 73  SASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 40.9 bits (95), Expect = 3e-04
 Identities = 15/109 (13%), Positives = 35/109 (32%), Gaps = 13/109 (11%)

Query: 744 TNNKAPKFIEGLKSCQATVNEEFKFTVQV---SISPEPKVSWFRDDQQVVESDNVK--IL 798
                  F++   S      ++     +V    +  +P + WF+     + S +      
Sbjct: 8   AEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSF 67

Query: 799 KET------LGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
           KE+      +    L I  + + D+  ++            SC   ++V
Sbjct: 68  KESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCD--SCGFNIDV 114

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192

 Score = 41.7 bits (97), Expect = 4e-04
 Identities = 25/151 (16%), Positives = 47/151 (31%), Gaps = 21/151 (13%)

Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEA 617
           + +  +   S  + C       P            E S    ++ +        ++ +  
Sbjct: 10  KKLAVEPKGSLEVNCSTTCNQ-PEVGGL-------ETSLNKILLDEQAQWKHYLVSNIS- 60

Query: 618 VDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVE--SLKAVMTDDGLVSFECKVV 675
             D   +C  T S G ++   + V V     Y+ PR V       ++      + EC+V 
Sbjct: 61  -HDTVLQCHFTCS-GKQESMNSNVSV-----YQPPRQVILTLQPTLVAVGKSFTIECRVP 113

Query: 676 G---FPTPTLQWFKDNEELKPGDVYQLTGTS 703
                 + TL  F+ NE L      +     
Sbjct: 114 TVEPLDSLTLFLFRGNETLHYETFGKAAPAP 144

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A* Length = 109

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)

Query: 557 VENVKAKIGTSAILECQVLVP--PWPRSIYWY-----------------NKEGVVEASDK 597
           ++  K ++G +A L C   +P       + W                   +    + S +
Sbjct: 1   MDGYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSR 60

Query: 598 YHIMAD-GLGGYSIEINYLEAVDDGEWKC 625
           Y +  D   G  S+ I  +   D G + C
Sbjct: 61  YQLKGDLNKGDVSLIIKNVTLDDHGTYCC 89

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A 2l7u_A* 2e5e_A Length = 581

 Score = 42.6 bits (100), Expect = 6e-04
 Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 15/155 (9%)

Query: 552 IFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEAS--------DKYHIMAD 603
                 +N+ A+IG   +L+C+      P+ + W    G  EA           +  +A 
Sbjct: 368 AAAASAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVAR 427

Query: 604 GLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMT 663
            L   S+ +  +   D+G ++C A + +G +  S   V V       KP  V+S   +  
Sbjct: 428 VLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPG--KPEIVDSASELTA 485

Query: 664 DDGLVSFECKVV---GFPTPTLQWFKDNEELKPGD 695
             G+ +     V    +P  TL W  D + L P +
Sbjct: 486 --GVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNE 518

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 21/154 (13%), Positives = 41/154 (26%), Gaps = 5/154 (3%)

Query: 272 IKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYS---VTAS 328
           ++C  D+        R    +          +   +   +I R+ +D  G Y        
Sbjct: 27  LQCWSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTH 86

Query: 329 NESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDR 388
           +    S     L +          +       V  G    L    RS  ++  H  R + 
Sbjct: 87  SPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSRSSYDM-YHLSR-EG 144

Query: 389 KLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTC 422
           +  E ++         +  D         G + C
Sbjct: 145 EAHERRLPAGPKVNGTFQADFPLGPATHGGTYRC 178

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1075
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	100.0
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	100.0
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	100.0
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	100.0
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	100.0
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	100.0
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	100.0
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	100.0
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	100.0
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.98
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.98
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.97
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.97
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.97
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.97
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.97
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.97
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.97
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.97
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.97
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.97
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.96
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.96
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.96
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.96
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.96
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.96
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.96
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.96
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.96
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.96
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.96
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.96
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.95
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.95
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.95
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.95
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.95
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.95
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.95
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.95
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.95
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.95
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.95
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.95
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.95
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.95
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.95
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.95
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.95
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.95
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.95
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.95
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.95
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.94
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.94
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.94
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.94
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.94
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.94
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.94
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.94
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.94
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.93
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.93
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.92
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.92
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.92
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.91
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.91
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.91
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.9
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.9
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.9
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.9
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.9
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.9
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.9
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.9
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.89
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.89
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.89
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.89
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.89
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.89
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.89
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.89
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.89
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.89
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.88
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.88
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.88
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.88
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.87
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.87
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.87
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.87
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.87
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.86
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.86
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.86
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.86
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.85
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.85
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.85
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.85
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.85
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.85
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.85
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.85
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.85
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.85
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.84
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.84
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.84
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.84
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.84
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.84
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.84
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.84
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.83
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.83
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.83
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.83
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.83
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.83
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.83
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.83
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.83
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.83
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.82
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.82
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.82
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.82
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.82
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.82
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.82
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.82
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.82
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.82
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.81
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.81
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.81
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.81
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.81
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.81
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.81
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.8
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.8
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.8
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.8
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.8
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.8
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.79
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.79
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.79
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.79
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.79
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.79
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.79
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.79
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.79
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.79
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.78
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.78
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.78
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.78
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.78
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.78
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.78
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.78
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.77
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.77
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.77
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.77
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.77
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.76
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.76
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.76
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.76
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.76
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.75
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.75
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.75
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.75
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.75
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.75
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.75
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.75
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.75
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.75
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.74
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.74
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.74
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.74
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.74
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.74
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.74
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.74
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.74
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.74
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.74
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.74
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.74
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.74
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.73
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.73
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.73
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.73
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.72
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.72
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.72
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.72
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.72
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.72
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.72
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.72
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.72
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.72
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.71
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.71
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.71
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.71
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.71
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.71
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.71
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.71
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.71
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.71
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.7
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.7
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.7
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.7
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.7
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.7
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.7
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.7
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.7
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.7
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.7
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.7
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.7
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.7
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.7
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.7
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.69
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.69
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.69
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.69
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.69
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.69
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.69
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.69
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.69
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.69
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.69
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.68
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.68
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.68
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.68
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.68
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.68
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.68
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.68
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.68
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.67
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.67
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.67
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.67
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.67
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.67
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.67
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.67
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.67
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.66
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.66
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.66
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.66
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.66
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.66
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.66
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.66
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.66
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.66
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.66
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.65
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.65
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.65
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.65
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.65
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.65
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.65
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.64
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.64
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.64
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.64
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.64
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.64
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.63
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.63
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.63
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.63
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.63
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.63
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.63
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.63
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.63
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.62
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.62
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.62
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.62
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.62
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.62
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.62
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.62
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.62
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.61
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.61
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.61
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.61
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.6
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.59
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.58
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.58
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.58
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.58
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.58
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.58
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.58
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.58
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.58
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.57
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.57
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.57
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.57
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.57
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.57
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.56
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.56
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.56
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.56
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.56
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.56
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.55
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.55
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.54
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.54
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.54
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.54
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.54
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.54
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.53
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.53
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.53
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.53
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.53
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.53
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.53
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.52
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.52
1he7_A	126	High affinity nerve growth factor receptor; transf	99.52
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.51
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.51
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.51
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.5
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.49
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.48
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.48
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.48
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.48
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.48
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.48
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.48
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.47
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.47
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.47
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.47
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.47
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.46
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.46
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.46
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.46
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.46
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.46
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.45
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.45
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.44
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.44
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.44
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.44
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.44
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.44
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.44
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.44
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.44
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.43
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.43
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.43
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.43
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.43
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.43
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.43
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.42
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.42
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.42
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.41
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.41
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.41
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.41
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.41
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.41
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.41
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.41
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.4
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.4
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.4
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.4
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.39
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.39
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.39
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.38
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.38
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.38
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.38
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.38
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.37
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.37
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.37
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.37
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.36
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.36
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.36
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.36
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.36
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.36
1he7_A	126	High affinity nerve growth factor receptor; transf	99.36
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.36
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.36
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.35
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.35
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.35
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.34
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.34
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.34
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.34
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.34
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.34
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.34
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.33
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.33
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.33
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.33
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.33
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.33
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.33
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.33
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.32
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.32
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.31
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.31
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.31
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.3
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.3
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.29
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.29
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.29
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.29

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=1.8e-73  Score=716.33  Aligned_cols=713  Identities=21%  Similarity=0.312  Sum_probs=539.2

Q ss_pred             cccceeecce-eEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEee-CCCceeccCcEEEEecCCeEEEEEceeccCC
Q psy16863        135 APAFIRRLHD-IAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRA-QGDHPIFGNRFRAINRDGRTELNIRRVRRDD  212 (1075)
Q Consensus       135 ~p~~~~~~~~-~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D  212 (1075)
                      +|.|+..+.+ +.+.+|++++|.|.+.          |.|.+.+.|++ +|..+....+......++  +|.|.+++.+|
T Consensus        38 ~P~~~~~p~~~~~~~~g~~~~l~C~a~----------g~p~p~~~W~k~~g~~~~~~~~~~~~~~~g--~l~i~~~~~~~  105 (816)
T 3dmk_A           38 GPVFLKEPTNRIDFSNSTGAEIECKAS----------GNPMPEIIWIRSDGTAVGDVPGLRQISSDG--KLVFPPFRAED  105 (816)
T ss_dssp             EEEEEECCCSEEEEETTTCEEEECEEE----------EESCCEEEEEETTSCBCCCBTTTBEECSTT--EEEECCCCGGG
T ss_pred             CCcEEeCCCCeEEEECCCCeEEEeeec----------CCCCCEEEEEeCCCCCccCCCceEEEeeCC--cEEEcCCChHH
Confidence            4677776665 5688899998777664          45678999999 565443333333445555  69999998887


Q ss_pred             ------CeEEEEEEEcCceeE-EEEEEEeeeccCCCCCccccccccceeeccceeEEEEEecCCCceEEEEecCCCeeeE
Q psy16863        213 ------GGRYSVTASNESGYS-TAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFS  285 (1075)
Q Consensus       213 ------~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~  285 (1075)
                            +|.|+|.|.|..|.. +..+.|.+.    .++.+...+.+..+.+|+.++|.|.+.+..       ......+.
T Consensus       106 ~~~~~d~G~Y~C~a~n~~G~~~S~~~~v~~~----~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~-------~~~~~~v~  174 (816)
T 3dmk_A          106 YRQEVHAQVYACLARNQFGSIISRDVHVRAV----VAQYYEADVNKEHVIRGNSAVIKCLIPSFV-------ADFVEVVS  174 (816)
T ss_dssp             CCHHHHEEEEEEEEEETTEEEEEEEEEEEEE----CCCCCCCBCCCEEEETTSCEEECCBCCHHH-------HTTEEEEE
T ss_pred             ccccccceEEEEEEecCcceEEccceEEEEE----EccccEEEEecceEecCceEEEEECCCccc-------cccEEEEE
Confidence                  899999999999986 455555543    235566677778899999999999764211       01125677


Q ss_pred             EecCCCccc-----cCCCeEEEeeCCeEEEEEcccCCCCC-EEEEEEEEeCCee-EE---EEEEEEEecC-CCCCCeeee
Q psy16863        286 FRAQGDHPI-----FGNRFRAINRDGRTELNIRRVRRDDG-GRYSVTASNESGY-ST---AKFELSVESQ-VPDAPAFIR  354 (1075)
Q Consensus       286 w~~~~~~~~-----~~~~~~~~~~~~~~~L~I~~~~~~d~-G~Y~C~a~n~~g~-~~---~~~~l~V~~~-~~~~p~~~~  354 (1075)
                      |++++....     ...++.+..++   .|.|.+++.+|+ |.|+|.|.|..+. ..   ....+.|... ...+|.+..
T Consensus       175 W~~~~~~~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~g~Y~C~~~~~~~~~~~~s~~~~~l~v~~~~~~~~P~i~~  251 (816)
T 3dmk_A          175 WHTDEEENYFPGAEYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVS  251 (816)
T ss_dssp             EEETTSCEECBSSCBTTTEEECTTS---CEEESSCCGGGSSCEEEEEEEETTTCCEEECSBCEEEEEECCCSCCCCBCCG
T ss_pred             EEecCceEeccccCCCceEEEecCc---eEEEecCChhhccceeEEEEeeeeeeeeeecccccceEEeCCCCCCCCcccc
Confidence            887776543     24566554443   699999999998 9999999985432 11   1234555432 123455543


Q ss_pred             ec--CceeeccCCeEEEEEEEecCCCcEEEEEECCEec------CCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEe
Q psy16863        355 RL--HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKL------EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       355 ~~--~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l------~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      ..  ....+.+|+.+.|.|.+.|.|.+.|+|+|++...      ....+..  ..+.  .|.|.+++.+|+|.|+|.|.|
T Consensus       252 ~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~--~~~~--~L~i~~v~~~D~G~Y~C~a~n  327 (816)
T 3dmk_A          252 LAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVK--QVSG--TLIIKDAVVEDSGKYLCVVNN  327 (816)
T ss_dssp             GGGEEEEEECTTSCEEECCCCBCSSCCEEEEEEECTTSSCEEECCCSSSEE--EETT--EEEECSCCGGGCEEEEEEEEC
T ss_pred             ccCccceEEeCCCeEEEEEEeeecCCCeEEEEeCCCCCccCcceecCCceE--eccc--eEEECCCCHhHCEEEEEEEEc
Confidence            22  4567899999999999999999999999965322      2223322  1222  589999999999999999999


Q ss_pred             CCCceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccCCCEEEEEeCCCCCCCcE
Q psy16863        427 AVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLG  506 (1075)
Q Consensus       427 ~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~~~~l~i~~~~~~d~G  506 (1075)
                      ..|.....+.|.|..++.    ....+....+.+|+++.|.|.+.|.|.+.++|+|+|..+..+. ..|.|..+..+|+|
T Consensus       328 ~~g~~~~~~~l~V~~~~~----~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~-~~L~i~~v~~~d~G  402 (816)
T 3dmk_A          328 SVGGESVETVLTVTAPLS----AKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE-SVLRIESVKKEDKG  402 (816)
T ss_dssp             SSCEEEEEEEEEECEEEE----EEEESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCCS-SEEEESSCCGGGCE
T ss_pred             CCCceEEEEEEEEcCCCc----eeeCCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCCC-CEEEEcCCCHHHCE
Confidence            999888788888875432    1222333447899999999999999999999999999997654 46999999999999


Q ss_pred             EEEEEEEecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEecCCCCceEEEE
Q psy16863        507 TYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWY  586 (1075)
Q Consensus       507 ~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~  586 (1075)
                      .|+|.|.|..|....+..+.|..                 ...+|.+...+....+.+|+.++|.|.+.+.|.| .+.|+
T Consensus       403 ~Y~C~a~n~~g~~~~~~~l~v~~-----------------~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p-~v~W~  464 (816)
T 3dmk_A          403 MYQCFVRNDRESAEASAELKLGG-----------------RFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTP-EISWE  464 (816)
T ss_dssp             EEEEEEECSSCEEEECCEEECCC-----------------SSCCCEEEEECCCEEECSSSCEEEEEEEECSSCC-EEEEE
T ss_pred             EEEEEEECCCCcEEEEEEEEEcc-----------------ccCCCceEecCcceEEcCCCCEEEEEEEecCCCC-EEEEE
Confidence            99999999999887777776642                 1246677777788889999999999999999987 89999


Q ss_pred             eCCeEEecCCcEEEE----EcCCceEEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEEeCCCCcCCCceeeccceee
Q psy16863        587 NKEGVVEASDKYHIM----ADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVM  662 (1075)
Q Consensus       587 ~~~~~i~~~~~~~~~----~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~~  662 (1075)
                      +++..+..+.++...    .++.....|.|.++..+|+|.|+|.|.|..|... ....+.|..++     .+.......+
T Consensus       465 ~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~~~p-----~~~~~~~~~v  538 (816)
T 3dmk_A          465 LDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAE-HSAKLNVYGLP-----YIRQMEKKAI  538 (816)
T ss_dssp             ETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEE-EEEEEEECSSC-----EECCCCCEEE
T ss_pred             ECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEE-EEEEEEEecCC-----eeEccCCeEE
Confidence            999998877776542    2333445799999999999999999999998865 34567776553     2222233456


Q ss_pred             ecCCeEEEEEEEecCCCCeEEEEECCEEcCCCCe--------EEEee---cCCCceEEEEEEecCceE-EEEEEEEEEec
Q psy16863        663 TDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDV--------YQLTG---TSSLGSYCCVAKNVMGKA-ESSTQLTIEDI  730 (1075)
Q Consensus       663 ~~g~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~--------~~~~~---~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~~  730 (1075)
                      ..|+.+.|.|.+.|.|.+.+.|+|+|..+..+.+        +.+..   .+|+|.|+|.|.|..|.. ...+.+.|.. 
T Consensus       539 ~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~-  617 (816)
T 3dmk_A          539 VAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMV-  617 (816)
T ss_dssp             ETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEEC-
T ss_pred             ecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEEecCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEec-
Confidence            7899999999999999999999999998865443        33433   258999999999999954 3456666653 


Q ss_pred             cccCchhhhhhhccCCCCCeEEe-ccceeeeecCCeEEEEEEEecCCCC-eEEEEECCEEeecCCcEEEEEeeCcEEEEE
Q psy16863        731 RNHLSEEDKLLLLTNNKAPKFIE-GLKSCQATVNEEFKFTVQVSISPEP-KVSWFRDDQQVVESDNVKILKETLGVCHLK  808 (1075)
Q Consensus       731 ~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~v~g~p~p-~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~  808 (1075)
                                       +|.+.. ......+..|+.+.|.|.+.+.|.| .|+|+|+|+++..+.++.+.........|.
T Consensus       618 -----------------~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~  680 (816)
T 3dmk_A          618 -----------------LPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLT  680 (816)
T ss_dssp             -----------------CCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTEEEEE
T ss_pred             -----------------CCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEEE
Confidence                             343332 2345568899999999999876654 999999999998777776665555678999


Q ss_pred             EccccCCCCeEEEEEEEeCCceEEEEEEEEEEecCCCCCCeeeeecc-eeecCCCeEEEEEEEEccCCCeeEEEECCEEc
Q psy16863        809 IHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGREL  887 (1075)
Q Consensus       809 I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~-~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l  887 (1075)
                      |.+++.+|+|.|+|.|.|..|....++.|.|..||.     +...+. ..+.+|+.++|.|.+.|.|.|.|+|+|+|..+
T Consensus       681 i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~-----~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~~~~~  755 (816)
T 3dmk_A          681 IEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPR-----WILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDT  755 (816)
T ss_dssp             EESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEE-----EEECCCCEEEETTCCEEEECEEEEESCCEEECCEECSSS
T ss_pred             EccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCc-----eeeecccceecCCCcEEEEEEEecCCCCeEEEEecCCCC
Confidence            999999999999999999999999999999987653     333333 34778999999999999999999999987544


Q ss_pred             CC-------CCe-----eEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEec
Q psy16863        888 KA-------GDI-----HKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFE  929 (1075)
Q Consensus       888 ~~-------~~~-----~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~  929 (1075)
                      ..       +..     ..|.+......|+|.|+|.|.|.+|++.+++.+..+.
T Consensus       756 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~v~~~~~~  809 (816)
T 3dmk_A          756 PGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQ  809 (816)
T ss_dssp             TTCCBCCCCBTTEEEETTEEEECSCCGGGCEEEEEEEECSSSSCEEEEEEEEEE
T ss_pred             CccccccccCCCEEecCCEEEECcCChhhCeEEEEEEEeCCCCCcEEEEEEEee
Confidence            32       111     1467777888999999999999999999999887654

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=3.6e-70  Score=654.15  Aligned_cols=531  Identities=26%  Similarity=0.495  Sum_probs=451.4

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      .||.|+.++.++.+.+|+.++|.|.+.|.|.+.|+|||||..|..+.++.+...+....|.|.++..+|+|.|+|.|.|.
T Consensus         4 ~pP~f~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   83 (570)
T 3b43_A            4 EPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENS   83 (570)
T ss_dssp             CCCEEEECCCCEEECTTSCEEEEEEEESSSSCEEEEECSSSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCcceEECCceEEcCCCEEEEEEEEccCCCCEEEEEECCEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEEEeC
Confidence            58999999999999999999999999999999999999999998888888887788889999999999999999999999


Q ss_pred             CCceeeEEEEEeecCCCCCCCeeeeecceE-EecCCeEEEEEEEECCCCCeEEEEeCCEeccCCC---------EEEEEe
Q psy16863        428 VGRSHCSCELSVLVPKAYKAPFFTKELEAI-LTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD---------IFALTA  497 (1075)
Q Consensus       428 ~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~-~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~---------~~~l~i  497 (1075)
                      .|....++.|.|...  ..+|.+...+... +.+|+++.|.|.+.|.|++.|+|+|||+.+..+.         ...|.|
T Consensus        84 ~g~~~~~~~l~v~~~--~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i  161 (570)
T 3b43_A           84 VGAVASSAVLVIKER--KLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQI  161 (570)
T ss_dssp             TEEEEEEEEEEECCC--CCCCEESSCCCCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEEEEEETTEEEEEE
T ss_pred             CceEEEEEEEEECCC--CCCCcccccCCCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEEEEEECCEEEEEE
Confidence            998887777777543  2345565554443 6789999999999999999999999999987543         246889


Q ss_pred             CCCCCCCcEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEecC
Q psy16863        498 NPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVP  577 (1075)
Q Consensus       498 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~  577 (1075)
                      ..+..+|+|.|+|.|.|..|....++.+.|...                 ..||.+...+....+.+|+.++|.|.+.|.
T Consensus       162 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~-----------------~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~  224 (570)
T 3b43_A          162 LQTDQSHVGQYNCSASNPLGTASSSAKLTLSEH-----------------EVPPFFDLKPVSVDLALGESGTFKCHVTGT  224 (570)
T ss_dssp             SSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC-----------------CCCCEEEECCCCBCCBSBSCEEEEEEEESS
T ss_pred             CcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCC-----------------CCCCccccCCceeEecCCCeEEEEEEEEEC
Confidence            999999999999999999999988888888631                 245677777778889999999999999999


Q ss_pred             CCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEEeCCCCcCCCceeec
Q psy16863        578 PWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVES  657 (1075)
Q Consensus       578 p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~  657 (1075)
                      |.| .++|++++..+..+.++.+...+ +...|.|.+++.+|+|.|+|.|.|..|... ....|.|..|     |.+...
T Consensus       225 p~p-~i~W~k~g~~i~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~-~~~~l~V~~~-----p~~~~~  296 (570)
T 3b43_A          225 API-KITWAKDNREIRPGGNYKMTLVE-NTATLTVLKVTKGDAGQYTCYASNVAGKDS-CSAQLGVQEP-----PRFIKK  296 (570)
T ss_dssp             SCC-EEEEEETTEECCTTSSEEEEEET-TEEEEEESSBCGGGCEEEEEEEEETTEEEE-EEEEECCBCC-----CEEEEC
T ss_pred             CCC-EEEEEECCEECcCCCcEEEEEEC-CEEEEEEcccCcccCEEEEEEEECCCCcEE-EEEEEEeecC-----Cccccc
Confidence            877 89999999999888777765443 346899999999999999999999999865 3345666554     445443


Q ss_pred             cc--eeeecCCeEEEEEEEecCCCCeEEEEECCEEcCCCCeEEEe-------------ecCCCceEEEEEEecCceEEEE
Q psy16863        658 LK--AVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT-------------GTSSLGSYCCVAKNVMGKAESS  722 (1075)
Q Consensus       658 ~~--~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~-------------~~~d~G~Y~C~a~N~~g~~~~~  722 (1075)
                      +.  ..+.+|+.+.|.|.+.|.|.|.++|+|+|..+..+.++.+.             ..+|+|.|+|.|.|..|....+
T Consensus       297 ~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~  376 (570)
T 3b43_A          297 LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSS  376 (570)
T ss_dssp             CCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEE
T ss_pred             CCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEE
Confidence            32  24678999999999999999999999999999877655432             2368999999999999999999


Q ss_pred             EEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeC
Q psy16863        723 TQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETL  802 (1075)
Q Consensus       723 ~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~  802 (1075)
                      +.|.|.                  .+|.|...+....+..|+.+.|.|.+.|.|.|.|+|+|+|.++..+.++.+... +
T Consensus       377 ~~l~V~------------------~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~-~  437 (570)
T 3b43_A          377 TSLKVK------------------EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSE-N  437 (570)
T ss_dssp             EEECEE------------------CCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEE-T
T ss_pred             EEEEec------------------CCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEc-C
Confidence            999997                  588888888888889999999999999999999999999999998888887654 3


Q ss_pred             cEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEecCCCCCCeeeeeccee-ecCCCeEEEEEEEEccCCCeeEEE
Q psy16863        803 GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWF  881 (1075)
Q Consensus       803 ~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~~-~~~g~~~~L~C~v~g~p~p~v~W~  881 (1075)
                      ....|.|.+++.+|+|.|+|.|.|.+|.+..++.|.|..|     |.|...+... +.+|+.+.|.|.+.|.|.|.|+|+
T Consensus       438 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~-----P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~  512 (570)
T 3b43_A          438 FLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAP-----PRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWF  512 (570)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCC-----CEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEE
T ss_pred             CEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccC-----CcccccCCCceecCCCeEEEEEEEecCCCCEEEEE
Confidence            4678999999999999999999999999998888888754     5566555544 678999999999999999999999


Q ss_pred             ECCEEcC-CC---------CeeEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEec
Q psy16863        882 KDGRELK-AG---------DIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFE  929 (1075)
Q Consensus       882 k~g~~l~-~~---------~~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~  929 (1075)
                      |||.++. .+         ....|.+......|+|.|+|.|.|.+|.+++++.|.|+|
T Consensus       513 k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~L~V~e  570 (570)
T 3b43_A          513 KDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE  570 (570)
T ss_dssp             ETTEECCCCTTTEEECCCSSEEEEEESSCCTTCCEEEEEEEECSSCEEEEEEEECCBC
T ss_pred             eCCeEeccCCCeEEEEECCCEEEEEECcCCHHHCEEEEEEEEECCcEEEEEEEEEEeC
Confidence            9986653 22         235677777788899999999999999999999998864

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=5.7e-70  Score=684.59  Aligned_cols=651  Identities=20%  Similarity=0.329  Sum_probs=500.0

Q ss_pred             EEEEcccccCC------CeEEEEEEEcCCeeE-EEEEEEEEeecCCCcccceeecceeEEeeCCeEEEEEEecCCCeeEE
Q psy16863         95 ELNIRRVRRDD------GGRYSVTASNESGYS-TAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKC  167 (1075)
Q Consensus        95 ~L~I~~~~~~d------~G~Y~c~a~n~~g~~-~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~~~l~c~~~~~~~~~c  167 (1075)
                      +|.|.++..+|      +|.|+|.|.|..|.. +..+.|.+..    ++.+...+.+..+.+|++++|.|.+.+..    
T Consensus        95 ~l~i~~~~~~~~~~~~d~G~Y~C~a~n~~G~~~S~~~~v~~~~----~~~~~~~~~~~~v~~G~~v~L~C~~~~~~----  166 (816)
T 3dmk_A           95 KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVV----AQYYEADVNKEHVIRGNSAVIKCLIPSFV----  166 (816)
T ss_dssp             EEEECCCCGGGCCHHHHEEEEEEEEEETTEEEEEEEEEEEEEC----CCCCCCBCCCEEEETTSCEEECCBCCHHH----
T ss_pred             cEEEcCCChHHccccccceEEEEEEecCcceEEccceEEEEEE----ccccEEEEecceEecCceEEEEECCCccc----
Confidence            58899988886      999999999999976 4455554432    23455566678899999999999764321    


Q ss_pred             EEccCCCeeEEEeeCCCcee-----ccCcEEEEecCCeEEEEEceeccCCC-eEEEEEEEcCcee-EE---EEEEEeeec
Q psy16863        168 QFDLNNTIPFSFRAQGDHPI-----FGNRFRAINRDGRTELNIRRVRRDDG-GRYSVTASNESGY-ST---AKFELSVES  237 (1075)
Q Consensus       168 ~~~~~~~~~~~W~~~~~~~~-----~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~n~~g~-~~---~~~~l~V~~  237 (1075)
                         ..+.+.+.|++++....     ..+|+.+. .++  .|.|.+++.+|+ |.|+|.|.|..+. ..   ....|.|..
T Consensus       167 ---~~~~~~v~W~~~~~~~~~~~~~~~~r~~~~-~~g--~L~I~~v~~~D~~g~Y~C~~~~~~~~~~~~s~~~~~l~v~~  240 (816)
T 3dmk_A          167 ---ADFVEVVSWHTDEEENYFPGAEYDGKYLVL-PSG--ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITE  240 (816)
T ss_dssp             ---HTTEEEEEEEETTSCEECBSSCBTTTEEEC-TTS--CEEESSCCGGGSSCEEEEEEEETTTCCEEECSBCEEEEEEC
T ss_pred             ---cccEEEEEEEecCceEeccccCCCceEEEe-cCc--eEEEecCChhhccceeEEEEeeeeeeeeeecccccceEEeC
Confidence               11226789999887654     35566553 344  699999999999 9999999975432 21   223455543


Q ss_pred             cCC-CCCccccc--cccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCccc------cCCCeEEEeeCCeE
Q psy16863        238 QVP-DAPAFIRR--LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPI------FGNRFRAINRDGRT  308 (1075)
Q Consensus       238 ~~~-~~p~~~~~--~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~~------~~~~~~~~~~~~~~  308 (1075)
                      ... .+|.+...  +....+.+|+.++|.|.+.+          .+.+.+.|++++....      ...++.  ...  .
T Consensus       241 ~~~~~~P~i~~~~~~~~~~v~~g~~v~L~C~~~g----------~p~p~v~W~k~~~~~~~~~~~~~~~~~~--~~~--~  306 (816)
T 3dmk_A          241 PISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQG----------YPVPVFRWYKFIEGTTRKQAVVLNDRVK--QVS--G  306 (816)
T ss_dssp             CCSCCCCBCCGGGGEEEEEECTTSCEEECCCCBC----------SSCCEEEEEEECTTSSCEEECCCSSSEE--EET--T
T ss_pred             CCCCCCCccccccCccceEEeCCCeEEEEEEeee----------cCCCeEEEEeCCCCCccCcceecCCceE--ecc--c
Confidence            221 23444322  24567889999999887654          4556777876432211      122222  122  2


Q ss_pred             EEEEcccCCCCCEEEEEEEEeCCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCE
Q psy16863        309 ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDR  388 (1075)
Q Consensus       309 ~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~  388 (1075)
                      +|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..    +|.+...+....+.+|++++|.|.+.|.|.+.++|+|||.
T Consensus       307 ~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~----~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~  382 (816)
T 3dmk_A          307 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA----PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGK  382 (816)
T ss_dssp             EEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECE----EEEEEEESSEEECCTTSCEEEEEEEEEECCCEEEEEETTE
T ss_pred             eEEECCCCHhHCEEEEEEEEcCCCceEEEEEEEEcC----CCceeeCCCceEecCCCCEEEEEEEeccCCCEEEEEECCE
Confidence            799999999999999999999999888888888874    6666667788899999999999999999999999999999


Q ss_pred             ecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeecCCCCCCCeeeeecc-eEEecCCeEEEE
Q psy16863        389 KLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELE-AILTEQGTVSLE  467 (1075)
Q Consensus       389 ~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~-~~~~~g~~v~l~  467 (1075)
                      .+..+..          .|.|.+++.+|+|.|+|.|.|..|....+..+.|...  ..+|.+...+. ..+.+|+.+.|.
T Consensus       383 ~~~~~~~----------~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~--~~~p~i~~~~~~~~v~~G~~v~L~  450 (816)
T 3dmk_A          383 AIGHSES----------VLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGR--FDPPVIRQAFQEETMEPGPSVFLK  450 (816)
T ss_dssp             ECSCCSS----------EEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCCS--SCCCEEEEECCCEEECSSSCEEEE
T ss_pred             ECCCCCC----------EEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEccc--cCCCceEecCcceEEcCCCCEEEE
Confidence            9865432          4899999999999999999999998777777766542  34556655444 347899999999


Q ss_pred             EEEECCCCCeEEEEeCCEeccCCCE--------------EEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEeccccc
Q psy16863        468 CKVMGIPTPQLIWYKDNKKIKAGDI--------------FALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSF  533 (1075)
Q Consensus       468 C~~~g~p~~~v~W~~~g~~l~~~~~--------------~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~  533 (1075)
                      |.+.|.|.+.++|+++|..+..+.+              ..|.|..+..+|+|.|+|.|.|..|....++.|.|...   
T Consensus       451 C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~---  527 (816)
T 3dmk_A          451 CVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGL---  527 (816)
T ss_dssp             EEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSS---
T ss_pred             EEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecC---
Confidence            9999999999999999999876543              25889999999999999999999999999999988632   


Q ss_pred             cCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEe
Q psy16863        534 LDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEIN  613 (1075)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~  613 (1075)
                                       | +...+....+.+|+.++|.|.+.+.|.+ .+.|++++..+....+..+..++    +|.|.
T Consensus       528 -----------------p-~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~i~W~k~~~~l~~~~~~~~~~~~----~l~i~  584 (816)
T 3dmk_A          528 -----------------P-YIRQMEKKAIVAGETLIVTCPVAGYPID-SIVWERDNRALPINRKQKVFPNG----TLIIE  584 (816)
T ss_dssp             -----------------C-EECCCCCEEEETTCCEEEECCEECSSEE-EEEEEETTEESCCSTTEEECTTS----EEEES
T ss_pred             -----------------C-eeEccCCeEEecCCeEEEEEEecCCCCC-EEEEEECCeEcccCCceEEecCC----eEEEE
Confidence                             2 2233455678899999999999998866 89999999998877776665444    79999


Q ss_pred             eee-ecCCceEEEEEECCCCceeeeeEEEEEeCCCCcCCCceeeccceeeecCCeEEEEEEEecCCCC-eEEEEECCEEc
Q psy16863        614 YLE-AVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTP-TLQWFKDNEEL  691 (1075)
Q Consensus       614 ~~~-~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~l~C~v~g~p~p-~v~W~k~g~~l  691 (1075)
                      ++. .+|+|.|+|.|.|..|........+.|..++......   .....+..|+.++|.|.+.+.|.+ .++|+|+|..+
T Consensus       585 ~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~---~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l  661 (816)
T 3dmk_A          585 NVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFA---FEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAI  661 (816)
T ss_dssp             SCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCC---CCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCC
T ss_pred             ecCccccCEEEEEEEEECCCceeeeeEEEEEecCCcccccc---ccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEc
Confidence            998 6999999999999999765555667777665432211   112246689999999999876554 89999999887


Q ss_pred             CCCC------------eEEEe--ecCCCceEEEEEEecCceEEEEEEEEEEeccccCchhhhhhhccCCCCCeEEeccce
Q psy16863        692 KPGD------------VYQLT--GTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKS  757 (1075)
Q Consensus       692 ~~~~------------~~~~~--~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  757 (1075)
                      ..+.            .+.+.  ..+|+|.|+|.|.|..|....++.|.|.                  .+|.|...+.+
T Consensus       662 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~------------------~~P~~~~~~~~  723 (816)
T 3dmk_A          662 SEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY------------------VPPRWILEPTD  723 (816)
T ss_dssp             CGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEE------------------EEEEEEECCCC
T ss_pred             CCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEE------------------eCCceeeeccc
Confidence            5332            22332  3478999999999999999999999987                  47888888888


Q ss_pred             eeeecCCeEEEEEEEecCCCCeEEEEECCEEee-------cCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCce
Q psy16863        758 CQATVNEEFKFTVQVSISPEPKVSWFRDDQQVV-------ESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQ  830 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~-------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~  830 (1075)
                      ..+..|+.+.|.|.+.|.|.|.|+|+|++..+.       .+.++.+   ..+  .|.|.+++.+|+|.|+|.|.|.+|.
T Consensus       724 ~~v~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~---~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~  798 (816)
T 3dmk_A          724 KAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRV---EEG--TLHVDNIQKTNEGYYLCEAINGIGS  798 (816)
T ss_dssp             EEEETTCCEEEECEEEEESCCEEECCEECSSSTTCCBCCCCBTTEEE---ETT--EEEECSCCGGGCEEEEEEEECSSSS
T ss_pred             ceecCCCcEEEEEEEecCCCCeEEEEecCCCCCccccccccCCCEEe---cCC--EEEECcCChhhCeEEEEEEEeCCCC
Confidence            889999999999999999999999999875442       2233332   223  6999999999999999999999999


Q ss_pred             EEEEEEEEEEe
Q psy16863        831 SITSCFLKLNV  841 (1075)
Q Consensus       831 ~~~s~~l~V~~  841 (1075)
                      +.+++.+..+-
T Consensus       799 ~~~~v~~~~~~  809 (816)
T 3dmk_A          799 GLSAVIMISVQ  809 (816)
T ss_dssp             CEEEEEEEEEE
T ss_pred             CcEEEEEEEee
Confidence            98887776653

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=5.6e-68  Score=635.17  Aligned_cols=540  Identities=23%  Similarity=0.422  Sum_probs=455.7

Q ss_pred             CCCccccccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCccccCCCeEEEeeCCeEEEEEcccCCCCC
Q psy16863        241 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDG  320 (1075)
Q Consensus       241 ~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~  320 (1075)
                      .||.|+..+.++.+.+|+.++|.|.+.+          .+.+.+.|++++..+....++++...++..+|.|.+++.+|+
T Consensus         4 ~pP~f~~~~~~~~v~~G~~v~L~C~~~g----------~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~   73 (570)
T 3b43_A            4 EPPYFIEPLEHVEAAIGEPITLQCKVDG----------TPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDV   73 (570)
T ss_dssp             CCCEEEECCCCEEECTTSCEEEEEEEES----------SSSCEEEEECSSSBCCCCSSEEEECCTTEEEEEESSCCGGGC
T ss_pred             CCCcceEECCceEEcCCCEEEEEEEEcc----------CCCCEEEEEECCEEccCCCCEEEEEECCEEEEEEccCChhhC
Confidence            5788999999999999999999887764          456788999888776667788888777888999999999999


Q ss_pred             EEEEEEEEeCCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEE
Q psy16863        321 GRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQH  400 (1075)
Q Consensus       321 G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~  400 (1075)
                      |.|+|.|.|..|.....+.+.|.. ...+|.|...+.+..+.+|+++.|.|.+.|.|++.|+|||||..+..+.++....
T Consensus        74 G~Y~C~a~N~~g~~~~~~~l~v~~-~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~  152 (570)
T 3b43_A           74 GEYTCKAENSVGAVASSAVLVIKE-RKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSF  152 (570)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEECC-CCCCCEESSCCCCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEEEEE
T ss_pred             EEEEEEEEeCCceEEEEEEEEECC-CCCCCcccccCCCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEEEEE
Confidence            999999999999888777777763 3357888888888999999999999999999999999999999998887776666


Q ss_pred             cCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeecCCCCCCCeeeeecce-EEecCCeEEEEEEEECCCCCeEE
Q psy16863        401 DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEA-ILTEQGTVSLECKVMGIPTPQLI  479 (1075)
Q Consensus       401 ~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~-~~~~g~~v~l~C~~~g~p~~~v~  479 (1075)
                      ......|.|.++..+|+|.|+|.|.|..|....++.|.|....  .+|.+...+.. .+.+|+.+.|.|.+.|.|++.|+
T Consensus       153 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~--~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~  230 (570)
T 3b43_A          153 IHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHE--VPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKIT  230 (570)
T ss_dssp             ETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC--CCCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEE
T ss_pred             ECCEEEEEECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCCC--CCCccccCCceeEecCCCeEEEEEEEEECCCCEEE
Confidence            6677789999999999999999999999998888888886542  34555544433 37789999999999999999999


Q ss_pred             EEeCCEeccCCC---------EEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCC
Q psy16863        480 WYKDNKKIKAGD---------IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPA  550 (1075)
Q Consensus       480 W~~~g~~l~~~~---------~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~  550 (1075)
                      |+|+|.++..+.         ...|.|..+..+|+|.|+|.|.|..|....++.|.|..                    +
T Consensus       231 W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~--------------------~  290 (570)
T 3b43_A          231 WAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE--------------------P  290 (570)
T ss_dssp             EEETTEECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBC--------------------C
T ss_pred             EEECCEECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeec--------------------C
Confidence            999999987653         34688999999999999999999999998888887762                    3


Q ss_pred             Ceeeeec-cceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEEC
Q psy16863        551 PIFIKEV-ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATS  629 (1075)
Q Consensus       551 ~~~~~~~-~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  629 (1075)
                      |.+...+ ....+.+|+.+.|.|.+.|.|.| .+.|+|++..+..+.++.+...+ ....|.|.+++.+|+|.|+|.|.|
T Consensus       291 p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p-~v~W~k~~~~l~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~N  368 (570)
T 3b43_A          291 PRFIKKLEPSRIVKQDEHTRYECKIGGSPEI-KVLWYKDETEIQESSKFRMSFVE-SVAVLEMYNLSVEDSGDYTCEAHN  368 (570)
T ss_dssp             CEEEECCCSBCCEESSCEEEEEEEEESSSSC-EEEEEETTEECCCSSSEEEEEET-TEEEEEEESCCGGGCEEEEEEEEB
T ss_pred             CcccccCCCccEEcCCCcEEEEEEEeeCCCC-EEEEeECCEECCCCCcEEEEEEC-CEEEEEECCCCcccCEEEEEEEEe
Confidence            4444433 33457899999999999999987 89999999999888887765544 345899999999999999999999


Q ss_pred             CCCceeeeeEEEEEeCCCCcCCCceeeccce-eeecCCeEEEEEEEecCCCCeEEEEECCEEcCCCCeEEEe--------
Q psy16863        630 SSGVKQFSAAYVHVLMPKNYRKPRFVESLKA-VMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT--------  700 (1075)
Q Consensus       630 ~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~-~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~--------  700 (1075)
                      ..|.... ...|.|..|+     .|...... .+.+|+.+.|.|.+.|.|.|.++|+|+|..+..+.++.+.        
T Consensus       369 ~~g~~~~-~~~l~V~~~P-----~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L  442 (570)
T 3b43_A          369 AAGSASS-STSLKVKEPP-----VFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSI  442 (570)
T ss_dssp             TTBCCEE-EEEECEECCC-----EECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEE
T ss_pred             CCCEEEE-EEEEEecCCC-----eeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEE
Confidence            9998764 4577777664     33332222 3567889999999999999999999999999887766543        


Q ss_pred             -----ecCCCceEEEEEEecCceEEEEEEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecC
Q psy16863        701 -----GTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSIS  775 (1075)
Q Consensus       701 -----~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~  775 (1075)
                           ..+|+|.|+|.|.|..|.....+.|.|.                  .||.|...+.+..+..|+.+.|.|.+.|.
T Consensus       443 ~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~------------------~~P~~~~~~~~~~~~~g~~~~l~c~~~g~  504 (570)
T 3b43_A          443 HILNVDSADIGEYQCKASNDVGSDTCVGSITLK------------------APPRFVKKLSDISTVVGEEVQLQATIEGA  504 (570)
T ss_dssp             EECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC------------------CCCEEEECCCCBCCBTTCCEEEEEEEESC
T ss_pred             EECCCChhhCEEEEEEEEECCCeEEEEEEEEec------------------cCCcccccCCCceecCCCeEEEEEEEecC
Confidence                 2368999999999999999999999887                  58999999999999999999999999999


Q ss_pred             CCCeEEEEECCEEe-ecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy16863        776 PEPKVSWFRDDQQV-VESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLN  840 (1075)
Q Consensus       776 p~p~v~W~k~g~~i-~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~  840 (1075)
                      |.|.|+|+|||..+ ..+.++.+... .+...|.|.+++.+|+|.|+|.|.|.+|.+.+++.|.|.
T Consensus       505 p~~~v~W~k~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~L~V~  569 (570)
T 3b43_A          505 EPISVAWFKDKGEIVRESDNIWISYS-ENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL  569 (570)
T ss_dssp             SSCCCEEEETTEECCCCTTTEEECCC-SSEEEEEESSCCTTCCEEEEEEEECSSCEEEEEEEECCB
T ss_pred             CCCEEEEEeCCeEeccCCCeEEEEEC-CCEEEEEECcCCHHHCEEEEEEEEECCcEEEEEEEEEEe
Confidence            99999999998665 45566665433 356799999999999999999999999999999998774

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=5.1e-66  Score=630.27  Aligned_cols=608  Identities=16%  Similarity=0.243  Sum_probs=461.5

Q ss_pred             cccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCcc---------------cc----CCCeEEEeeCCe
Q psy16863        247 RRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHP---------------IF----GNRFRAINRDGR  307 (1075)
Q Consensus       247 ~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~---------------~~----~~~~~~~~~~~~  307 (1075)
                      .++.+..+.+|+.++|.|...+.          +...+.|++++...               ..    ..+..+..   .
T Consensus         4 ~~p~~~~v~~G~~v~L~C~~~~~----------~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~gr~~~~~---~   70 (642)
T 1e07_A            4 IESTPFNVAEGKEVLLLVHNLPQ----------HLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYP---N   70 (642)
T ss_pred             EeccCCcccccccEEEEEccCCC----------CceEEEEECCcccCCcceEEEEEccccccccCccccCceeecc---C
Confidence            34556778999999999975432          23345565522111               00    11222211   2


Q ss_pred             EEEEEcccCCCCCEEEEEEEEeC-CeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEEC
Q psy16863        308 TELNIRRVRRDDGGRYSVTASNE-SGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN  386 (1075)
Q Consensus       308 ~~L~I~~~~~~d~G~Y~C~a~n~-~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~  386 (1075)
                      .+|.|.+++.+|+|.|+|.+.|. .+.....+.|.|... +.+|.+.. .....+.+|+.+.|.|.+.+ |.+.|+|+|+
T Consensus        71 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~-~~~p~i~~-~~~~~v~~g~~v~l~C~~~~-p~~~v~W~~~  147 (642)
T 1e07_A           71 ASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPE-LPKPSISS-NNSKPVEDKDAVAFTCEPET-QDATYLWWVN  147 (642)
T ss_pred             CcEEECCCCcccCcEEEEEEEcCCCeEEEEEEEEEeccc-CCCCcEEc-cCceeEecCCcEEEEEECCC-CCeeEEEEEC
Confidence            37999999999999999999985 344566777888752 23455443 34567889999999999988 8899999999


Q ss_pred             CEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCce-eeEEEEEeecCCCCCCCeeeeecceEEecCCeEE
Q psy16863        387 DRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS-HCSCELSVLVPKAYKAPFFTKELEAILTEQGTVS  465 (1075)
Q Consensus       387 g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~-~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~  465 (1075)
                      |..+..+.++.+..++.  .|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|.  .+.+ .+....+.+|+.+.
T Consensus       148 g~~l~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~--~~~~-~~~~~~~~~G~~~~  222 (642)
T 1e07_A          148 NQSLPVSPRLQLSNGNR--TLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPD--APTI-SPLNTSYRSGENLN  222 (642)
T ss_pred             CeECCCCCceEEcCCCC--EEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCCC--CcEE-ecCCcccccCCEEE
Confidence            99998887776655443  68999999999999999999998864 3456777775542  2222 22233478999999


Q ss_pred             EEEEEECCCCCeEEEEeCCEeccCCCEEEEEeCCCCCCCcEEEEEEEEecceeeEEEE--EEEEeccccccCCCCCCcCC
Q psy16863        466 LECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTS--RVIARGQQSFLDNDDVPFNS  543 (1075)
Q Consensus       466 l~C~~~g~p~~~v~W~~~g~~l~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~--~v~v~~~~~~~~~~~~~~~~  543 (1075)
                      |.|.+.|.|.+.|+|+|+|..+..+  ..|.|..+..+|+|.|+|.|.|..|....+.  .|.|...             
T Consensus       223 l~C~~~g~p~~~i~W~~~g~~i~~~--~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~-------------  287 (642)
T 1e07_A          223 LSCHAASNPPAQYSWFVNGTFQQST--QELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAE-------------  287 (642)
T ss_pred             EEEEcCCCCCcEEEEEECCeEcccC--CceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEcc-------------
Confidence            9999999999999999999998654  4588889999999999999999998765544  4444321             


Q ss_pred             CCCCCCCCeeeeeccceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceE
Q psy16863        544 LMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEW  623 (1075)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  623 (1075)
                          .++|.+ .......+..|+.+.|.|.+.+.| + .+.|++++..+..+.++.+..++   ..|.|.++..+|+|.|
T Consensus       288 ----~~~p~i-~~~~~~~~~~g~~v~l~C~~~~~p-~-~v~W~~~g~~l~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y  357 (642)
T 1e07_A          288 ----PPKPFI-TSNNSNPVEDEDAVALTCEPEIQN-T-TYLWWVNNQSLPVSPRLQLSNDN---RTLTLLSVTRNDVGPY  357 (642)
T ss_pred             ----CCCCEE-EcCCceeEecCCcEEEEEECCCCC-c-cEEEEECCccCCCcCCEEEeCCC---CEEEEeccCcccCeeE
Confidence                122332 223344566688899999999876 4 79999999988877777765443   3899999999999999


Q ss_pred             EEEEECCCCceeeeeEEEEEeCCCCcCCCceeeccceeeecCCeEEEEEEEecCCCCeEEEEECCEEcCCCCeEEEee--
Q psy16863        624 KCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTG--  701 (1075)
Q Consensus       624 ~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~--  701 (1075)
                      +|.|.|..|........+.|..++..  +.+ ......+..|+.+.|.|.+.|.|.|.++|+|+|..+..+..+.+..  
T Consensus       358 ~C~a~n~~g~~~s~~~~l~V~~~p~~--~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~~~~L~i~~~~  434 (642)
T 1e07_A          358 ECGIQNELSVDHSDPVILNVLYGPDD--PTI-SPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELFISNIT  434 (642)
T ss_pred             EEEEeCCCCCcceeeEEEEEEcCCCC--Cee-cCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCCCceEEEccCC
Confidence            99999999876545566777655421  221 2223356789999999999999999999999999998888887764  


Q ss_pred             cCCCceEEEEEEecCceEEEEEE--EEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecCCCCe
Q psy16863        702 TSSLGSYCCVAKNVMGKAESSTQ--LTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPK  779 (1075)
Q Consensus       702 ~~d~G~Y~C~a~N~~g~~~~~~~--l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~  779 (1075)
                      .+|.|.|+|.|.|..|....+..  +.|...               ..+|.+. ......+..|+++.|.|.+. .|.+.
T Consensus       435 ~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~---------------~~~p~i~-~~~~~~v~~g~~v~l~C~~~-~~~~~  497 (642)
T 1e07_A          435 EKNSGLYTCQANNSASGHSRTTVKTITVSAE---------------LPKPSIS-SNNSKPVEDKDAVAFTCEPE-AQNTT  497 (642)
T ss_pred             hhhCeEEEEEEEcCCCCCcccceEEEEEecc---------------CCCceEe-cCCceeecCCCeEEEEEECC-CCCcE
Confidence            47999999999999998776644  444321               1244443 34556788999999999999 48899


Q ss_pred             EEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEE-EEEEEEEecCCCCCCeeeeecceee
Q psy16863        780 VSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT-SCFLKLNVPKHYKKPKFLEELKAVL  858 (1075)
Q Consensus       780 v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~-s~~l~V~~~~~~~~p~~~~~~~~~~  858 (1075)
                      ++|+|+|.++..+.++.+...   ...|.|.+++.+|+|.|+|.|.|..|...+ ++.|.|..+|..  +. .......+
T Consensus       498 i~W~~~g~~l~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~--~~-~~~~~~~v  571 (642)
T 1e07_A          498 YLWWVNGQSLPVSPRLQLSNG---NRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDT--PI-ISPPDSSY  571 (642)
T ss_pred             EEEEECCEeCCCCCcEEEcCC---CcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCc--ce-ecCCceeE
Confidence            999999999988888776532   248999999999999999999999998654 688888865421  11 11122347


Q ss_pred             cCCCeEEEEEEEEccCCCeeEEEECCEEcCCCCeeEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEe
Q psy16863        859 SEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGF  928 (1075)
Q Consensus       859 ~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~  928 (1075)
                      .+|+.++|.|.+.|.|.|.|+|+|||.+|..+.  .|.+......|+|.|+|.|.|.+|.+++++.|.|.
T Consensus       572 ~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~~~--~L~i~~~~~~d~G~Y~C~a~N~~G~~~~s~~l~V~  639 (642)
T 1e07_A          572 LSGANLNLSCHSASNPSPQYSWRINGIPQQHTQ--VLFIAKITPNNNGTYACFVSNLATGRNNSIVKSIT  639 (642)
T ss_pred             EcCCcEEEEEEeccCCCCeEEEEECCEECccCc--eEEECcccccCCeEEEEEEEecccCcceeEEEEEE
Confidence            789999999999999999999999999998654  45666777889999999999999999999988875

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=8.8e-65  Score=619.35  Aligned_cols=594  Identities=15%  Similarity=0.208  Sum_probs=449.3

Q ss_pred             ecceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCCCceec--------------------cCcEEEEecCCe
Q psy16863        141 RLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF--------------------GNRFRAINRDGR  200 (1075)
Q Consensus       141 ~~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~~~~~~--------------------~~~~~~~~~~~~  200 (1075)
                      .+.++.+.+|++++|.|...+.          +...+.|++++. ...                    .+|+.+. .  .
T Consensus         5 ~p~~~~v~~G~~v~L~C~~~~~----------~~~~v~W~k~~~-~~~~~~i~~~~~~~~~~~~~~~~~gr~~~~-~--~   70 (642)
T 1e07_A            5 ESTPFNVAEGKEVLLLVHNLPQ----------HLFGYSWYKGER-VDGNRQIIGYVIGTQQATPGPAYSGREIIY-P--N   70 (642)
T ss_pred             eccCCcccccccEEEEEccCCC----------CceEEEEECCcc-cCCcceEEEEEccccccccCccccCceeec-c--C
Confidence            3456678899999999985442          335677877432 111                    1122111 1  2


Q ss_pred             EEEEEceeccCCCeEEEEEEEcC-ceeEEEEEEEeeeccCCCCCccccccccceeeccceeEEEEEecCCCceEEEEecC
Q psy16863        201 TELNIRRVRRDDGGRYSVTASNE-SGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLN  279 (1075)
Q Consensus       201 ~~L~I~~~~~~D~G~Y~C~a~n~-~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~  279 (1075)
                      ..|.|.+++.+|+|.|+|.+.|. .+.....+.|.|.... .+|.+ .......+.+|+.+.|.|.+.+           
T Consensus        71 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~-~~p~i-~~~~~~~v~~g~~v~l~C~~~~-----------  137 (642)
T 1e07_A           71 ASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPEL-PKPSI-SSNNSKPVEDKDAVAFTCEPET-----------  137 (642)
T ss_pred             CcEEECCCCcccCcEEEEEEEcCCCeEEEEEEEEEecccC-CCCcE-EccCceeEecCCcEEEEEECCC-----------
Confidence            37999999999999999999986 3555667778876422 23333 3344566888999998887653           


Q ss_pred             CCeeeEEecCCCccccCCCeEEEeeCCeEEEEEcccCCCCCEEEEEEEEeCCee-EEEEEEEEEecCCCCCCeeeeecCc
Q psy16863        280 NTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGY-STAKFELSVESQVPDAPAFIRRLHD  358 (1075)
Q Consensus       280 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~p~~~~~~~~  358 (1075)
                      +.+.+.|++++..+..+.++.+...  ...|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|...   |+.+...+.+
T Consensus       138 p~~~v~W~~~g~~l~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~---p~~~~~~~~~  212 (642)
T 1e07_A          138 QDATYLWWVNNQSLPVSPRLQLSNG--NRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYG---PDAPTISPLN  212 (642)
T ss_pred             CCeeEEEEECCeECCCCCceEEcCC--CCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeC---CCCcEEecCC
Confidence            4567888887765555666665433  348999999999999999999998875 355678888742   2222334567


Q ss_pred             eeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEE
Q psy16863        359 IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELS  438 (1075)
Q Consensus       359 ~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~  438 (1075)
                      ..+.+|+.++|.|.+.|.|.+.|+|+|||..+..+           ..|.|.+++.+|+|.|+|.|.|..|....+..+.
T Consensus       213 ~~~~~G~~~~l~C~~~g~p~~~i~W~~~g~~i~~~-----------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~  281 (642)
T 1e07_A          213 TSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQST-----------QELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTT  281 (642)
T ss_pred             cccccCCEEEEEEEcCCCCCcEEEEEECCeEcccC-----------CceEEecccccCCeEEEEEEEeCCCceEEeeeEE
Confidence            78899999999999999999999999999988432           2488999999999999999999998776555555


Q ss_pred             eecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccCCCE-------EEEEeCCCCCCCcEEEEEE
Q psy16863        439 VLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDI-------FALTANPKDPSSLGTYTCE  511 (1075)
Q Consensus       439 V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~~-------~~l~i~~~~~~d~G~Y~C~  511 (1075)
                      |.+.....+|.+.......+..|+.+.|.|.+.+.| +.++|+|+|+.+..+.+       ..|.|..+..+|+|.|+|.
T Consensus       282 v~v~~~~~~p~i~~~~~~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  360 (642)
T 1e07_A          282 ITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECG  360 (642)
T ss_pred             EEEEccCCCCEEEcCCceeEecCCcEEEEEECCCCC-ccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEE
Confidence            554333344555544444466688899999999876 69999999998865433       3688999999999999999


Q ss_pred             EEecceeeE-EEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEecCCCCceEEEEeCCe
Q psy16863        512 AVNCMGAAF-STSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG  590 (1075)
Q Consensus       512 a~n~~g~~~-~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~  590 (1075)
                      |.|..|... ..+.|.|..                   +|+.+...+....+.+|+.++|.|.+.+.|.| .+.|++++.
T Consensus       361 a~n~~g~~~s~~~~l~V~~-------------------~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~i~W~~~g~  420 (642)
T 1e07_A          361 IQNELSVDHSDPVILNVLY-------------------GPDDPTISPSYTYYRPGVNLSLSCHAASNPPA-QYSWLIDGN  420 (642)
T ss_pred             EeCCCCCcceeeEEEEEEc-------------------CCCCCeecCCceEecCCCcEEEEEEcCccCCC-eEEEEECCE
Confidence            999998753 346677652                   12222334556778999999999999999977 899999988


Q ss_pred             EEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEEeCCCCcCCCceeeccceeeecCCeEEE
Q psy16863        591 VVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSF  670 (1075)
Q Consensus       591 ~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~l  670 (1075)
                      .+..+            ..|.|.++..+|+|.|+|.|.|..|....+ ..+.|.+.....+|.+.......+.+|+.+.|
T Consensus       421 ~~~~~------------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s-~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l  487 (642)
T 1e07_A          421 IQQHT------------QELFISNITEKNSGLYTCQANNSASGHSRT-TVKTITVSAELPKPSISSNNSKPVEDKDAVAF  487 (642)
T ss_pred             EcCCC------------ceEEEccCChhhCeEEEEEEEcCCCCCccc-ceEEEEEeccCCCceEecCCceeecCCCeEEE
Confidence            76421            269999999999999999999999876533 23344333323345554433444668999999


Q ss_pred             EEEEecCCCCeEEEEECCEEcCCCCeEEEe-----------ecCCCceEEEEEEecCceEEE-EEEEEEEeccccCchhh
Q psy16863        671 ECKVVGFPTPTLQWFKDNEELKPGDVYQLT-----------GTSSLGSYCCVAKNVMGKAES-STQLTIEDIRNHLSEED  738 (1075)
Q Consensus       671 ~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~-----------~~~d~G~Y~C~a~N~~g~~~~-~~~l~V~~~~~~~~~~~  738 (1075)
                      .|.+.+ |.+.++|+|+|..+..+.++.+.           ..+|+|.|+|.|.|..|...+ .+.|.|..         
T Consensus       488 ~C~~~~-~~~~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~---------  557 (642)
T 1e07_A          488 TCEPEA-QNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLY---------  557 (642)
T ss_pred             EEECCC-CCcEEEEEECCEeCCCCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEe---------
Confidence            999984 88899999999998876654432           236899999999999998655 68888874         


Q ss_pred             hhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCe
Q psy16863        739 KLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQA  818 (1075)
Q Consensus       739 ~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G  818 (1075)
                              .|+.+...+.+..+..|+.+.|.|.+.|.|.|.|+|+|||.+|..+            ..|.|.+++.+|+|
T Consensus       558 --------~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~~------------~~L~i~~~~~~d~G  617 (642)
T 1e07_A          558 --------GPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHT------------QVLFIAKITPNNNG  617 (642)
T ss_pred             --------CCCcceecCCceeEEcCCcEEEEEEeccCCCCeEEEEECCEECccC------------ceEEECcccccCCe
Confidence                    3555666667788999999999999999999999999999988542            26999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEEe
Q psy16863        819 EWKCIATNDFGQSITSCFLKLNV  841 (1075)
Q Consensus       819 ~Y~C~A~N~~G~~~~s~~l~V~~  841 (1075)
                      .|+|.|.|.+|.+..++.|.|.+
T Consensus       618 ~Y~C~a~N~~G~~~~s~~l~V~v  640 (642)
T 1e07_A          618 TYACFVSNLATGRNNSIVKSITV  640 (642)
T ss_pred             EEEEEEEecccCcceeEEEEEEE
Confidence            99999999999999999998875

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=100.00  E-value=3e-61  Score=603.00  Aligned_cols=623  Identities=15%  Similarity=0.211  Sum_probs=117.8

Q ss_pred             CCCccccccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCccccCCCeEEEe--e-CCeEEEEEcccCC
Q psy16863        241 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAIN--R-DGRTELNIRRVRR  317 (1075)
Q Consensus       241 ~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~--~-~~~~~L~I~~~~~  317 (1075)
                      .+|.+........+.+|++++|.|....              .+.|.+.+.......++.+..  + ....+|.|.+++.
T Consensus        30 ~~p~l~~~~~~~~v~~G~~vtL~C~~~~--------------~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~~~~   95 (772)
T 3v2a_R           30 DLPRLSIQKDILTIKANTTLQITCRGQR--------------DLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIG   95 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCEECCCCCeEEEcCCCCEEEEEeccC--------------CeeeeCCCCCCccCCceeEEEcCCCcEEEEEEECCCcH
Confidence            3455555566778999999999997542              234444333222222333322  1 2245899999999


Q ss_pred             CCCEEEEEEEEeCCeeEEEEEEEEEecCCCCCCee---eeecCceeeccC--CeEEEEEEEecCCCcEEEEEEC--CEec
Q psy16863        318 DDGGRYSVTASNESGYSTAKFELSVESQVPDAPAF---IRRLHDIAVKVG--TRARLLVEIRSPTEIKIHWYRN--DRKL  390 (1075)
Q Consensus       318 ~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~---~~~~~~~~v~~G--~~v~l~C~~~g~p~~~v~W~k~--g~~l  390 (1075)
                      +|+|.|+|.+.+  +..+..+.|.|..  +.+|.+   ...+....+.+|  ++++|.|.+.+ |.+.|+|+|+  |..+
T Consensus        96 ~d~G~Y~C~~~~--~~~~~~~~v~v~~--~~~~~~~~~~~~~~~~~v~~G~~~~v~L~C~~~~-p~~~v~w~~~~~~~~~  170 (772)
T 3v2a_R           96 NDTGAYKCFYRE--TDLASVIYVYVQD--YRSPFIASVSDQHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRF  170 (772)
T ss_dssp             ----------------------------------------CEEEEEEESSCCCEEEECCCCSC-SSCCEEEEEETTTEEE
T ss_pred             hhCEeEEEEEcC--CCEEEEEEEEECC--CCCCceEcCcccceeEEEecCCCCeEEEEccCCC-CCcEEEEEecCCCccc
Confidence            999999999973  2234445555542  223332   123456778899  99999999966 6789999998  6665


Q ss_pred             CCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeE-EEEEeecCCCCCCCeeeeecc-eEEecCCeEEEEE
Q psy16863        391 EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCS-CELSVLVPKAYKAPFFTKELE-AILTEQGTVSLEC  468 (1075)
Q Consensus       391 ~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s-~~l~V~~~~~~~~p~~~~~~~-~~~~~g~~v~l~C  468 (1075)
                      .............  .|.|.+++.+|+|.|+|.+.+..+..... ..+.+...+  .+.....+.. ..+.+|+.+.|.|
T Consensus       171 ~~~~~~~~~~~~~--~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~~~v~~~~--~~~v~~~~~~~~~v~~G~~v~L~C  246 (772)
T 3v2a_R          171 VPDGNRISWDSKK--GFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYR--IYDVVLSPSHGIELSVGEKLVLNC  246 (772)
T ss_dssp             CCCSSSCEEETTT--EEEEEGGGTTTCSEEEEEEEETTEEEECCEEEEEEECCC--EEEEEEECCSCEEEETTCCEEEEE
T ss_pred             cCCCceeecCCCC--CeEecCCChhhCeEEEEEEEECCceEEEEEEEEEEecCc--cceeeeCCCCceEEecCCcEEEEE
Confidence            4433211222222  48899999999999999999864432221 233332221  1112222222 3588999999999


Q ss_pred             EEEC--CCCCeEEEEeCCEeccCC-----------------CEEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEec
Q psy16863        469 KVMG--IPTPQLIWYKDNKKIKAG-----------------DIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARG  529 (1075)
Q Consensus       469 ~~~g--~p~~~v~W~~~g~~l~~~-----------------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~  529 (1075)
                      .+.+  .|.+.+.|++++..+...                 ....|.|..+..+|+|.|+|.|.|..|.......|.|..
T Consensus       247 ~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~  326 (772)
T 3v2a_R          247 TARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE  326 (772)
T ss_dssp             EEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             EEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeC
Confidence            9997  455689999999875431                 233689999999999999999999999888888888873


Q ss_pred             cccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCCceEE
Q psy16863        530 QQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS  609 (1075)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~  609 (1075)
                      ++..                 ...........+.+|+.++|.|.+.+.|.| .+.|++++..+.....+  .    +...
T Consensus       327 ~p~~-----------------~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~g~~l~~~~~~--~----~~~~  382 (772)
T 3v2a_R          327 KPFV-----------------AFGSGMESLVEATVGERVRIPAKYLGYPPP-EIKWYKNGIPLESNHTI--K----AGHV  382 (772)
T ss_dssp             CCC-----------------------------------------------------------------------------
T ss_pred             CCee-----------------EeccCCCCcEEEcCCCcEEEEEEEeeeCCC-eEEEEECCEeCCCCceE--c----ccee
Confidence            2110                 001112245668899999999999998877 89999999887653222  1    2348


Q ss_pred             EEEeeeeecCCceEEEEEECCCCceee-eeEEEEEeCCCCcCCCceeeccceeeecCCeEEEEEEEecCCCCe-EEEEEC
Q psy16863        610 IEINYLEAVDDGEWKCVATSSSGVKQF-SAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPT-LQWFKD  687 (1075)
Q Consensus       610 L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~l~C~v~g~p~p~-v~W~k~  687 (1075)
                      |.|.++..+|+|.|+|.|.|..|.... ....+.|..|+.+....+.. ....+..|+.+.|.|.+.|.|.|. ++|+++
T Consensus       383 L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~-~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~  461 (772)
T 3v2a_R          383 LTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLIS-PVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQ  461 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCC-CccccCCCCcEEEEeEeccCCCCcEEEEEEc
Confidence            999999999999999999999886542 23345555554332211111 112366789999999999999996 999996


Q ss_pred             CEE--------------------------------cC---------CC-----CeEEEeecCCCceEEEEEEecCceEEE
Q psy16863        688 NEE--------------------------------LK---------PG-----DVYQLTGTSSLGSYCCVAKNVMGKAES  721 (1075)
Q Consensus       688 g~~--------------------------------l~---------~~-----~~~~~~~~~d~G~Y~C~a~N~~g~~~~  721 (1075)
                      +..                                +.         .+     ..+.+...+|+|.|+|.|.|..|....
T Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~~d~G~Y~C~a~N~~g~~~~  541 (772)
T 3v2a_R          462 LEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGER  541 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeecccCeEEEEEEEccccccce
Confidence            322                                11         00     122333447899999999999999988


Q ss_pred             EEEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEE---
Q psy16863        722 STQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKIL---  798 (1075)
Q Consensus       722 ~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~---  798 (1075)
                      .+.|.|..                  +|.+...+. ..+.+|+++.|.|.+.|.|.|.++|+|+|..+.........   
T Consensus       542 ~~~l~V~~------------------~p~i~~~p~-~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~  602 (772)
T 3v2a_R          542 VISFHVTR------------------GPEITLQPD-MQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPV  602 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEEEEEEC------------------CceeeccCC-cccccCCceEEEEeccCCCCCCcEEEEcCCcccccccCcccccc
Confidence            88888873                  455544333 34779999999999999999999999999876543222111   


Q ss_pred             ----------------EeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEE--EEEEEEEecCCCCCCeeeeecce-eec
Q psy16863        799 ----------------KETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT--SCFLKLNVPKHYKKPKFLEELKA-VLS  859 (1075)
Q Consensus       799 ----------------~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~--s~~l~V~~~~~~~~p~~~~~~~~-~~~  859 (1075)
                                      ....+...|.|.+++.+|+|.|+|.|.|..|....  ...|.|.+.   .+|.|...+.. .+.
T Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~---~~P~~~~~~~~~~v~  679 (772)
T 3v2a_R          603 CKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLER---VAPTITGNLENQTTS  679 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeeccccc---CCCEeecCCCceEEe
Confidence                            11223456999999999999999999997665443  344555321   24555544443 377


Q ss_pred             CCCeEEEEEEEEccCCCeeEEEECCEEcCCCC-------eeEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEecCCh
Q psy16863        860 EGGAVNLECKVIGVPQPTLKWFKDGRELKAGD-------IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKS  932 (1075)
Q Consensus       860 ~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~-------~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~~  932 (1075)
                      +|+.++|.|.+.|.|.|.|+|+|||.+|..+.       ...|.+......|+|.|+|.|.|.+|.+++++.|.|.++|.
T Consensus       680 ~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~  759 (772)
T 3v2a_R          680 IGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQE  759 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCEEEEEEeCccCCCeEEEEECCeECcCCCCeEEcCCCcEEEECcCCHHHCEEEEEEEEeCCcceeEEEEEEEECCCC
Confidence            89999999999999999999999999987654       33456666777899999999999999999999999987665


Q ss_pred             h
Q psy16863        933 Q  933 (1075)
Q Consensus       933 ~  933 (1075)
                      .
T Consensus       760 ~  760 (772)
T 3v2a_R          760 K  760 (772)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=100.00  E-value=2.9e-60  Score=594.11  Aligned_cols=629  Identities=17%  Similarity=0.235  Sum_probs=122.6

Q ss_pred             cccceeecceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCCCceeccCcEEEEe--c-CCeEEEEEceeccC
Q psy16863        135 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAIN--R-DGRTELNIRRVRRD  211 (1075)
Q Consensus       135 ~p~~~~~~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~~~~~~~~~~~~~~--~-~~~~~L~I~~~~~~  211 (1075)
                      +|.+........+.+|++++|.|...+              .+.|.+.+.......++.+..  . .....|.|.+++.+
T Consensus        31 ~p~l~~~~~~~~v~~G~~vtL~C~~~~--------------~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~   96 (772)
T 3v2a_R           31 LPRLSIQKDILTIKANTTLQITCRGQR--------------DLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGN   96 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCEECCCCCeEEEcCCCCEEEEEeccC--------------CeeeeCCCCCCccCCceeEEEcCCCcEEEEEEECCCcHh
Confidence            455555556778999999999998643              346766554333333433322  1 22458999999999


Q ss_pred             CCeEEEEEEEcCceeEEEEEEEeeeccCCCCCcc---ccccccceeecc--ceeEEEEEecCCCceEEEEecCCCeeeEE
Q psy16863        212 DGGRYSVTASNESGYSTAKFELSVESQVPDAPAF---IRRLHDIAVKVG--TRARLLVEIRSPTEIKCQFDLNNTIPFSF  286 (1075)
Q Consensus       212 D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~---~~~~~~~~v~~g--~~~~l~c~~~~~~~~~c~~~~~~~~~~~w  286 (1075)
                      |+|.|+|.+.+  +..+.++.|.|.  .+.+|.+   ...+..+.+.+|  +.++|.|.+..           +...+.|
T Consensus        97 d~G~Y~C~~~~--~~~~~~~~v~v~--~~~~~~~~~~~~~~~~~~v~~G~~~~v~L~C~~~~-----------p~~~v~w  161 (772)
T 3v2a_R           97 DTGAYKCFYRE--TDLASVIYVYVQ--DYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSI-----------SNLNVSL  161 (772)
T ss_dssp             ---------------------------------------CEEEEEEESSCCCEEEECCCCSC-----------SSCCEEE
T ss_pred             hCEeEEEEEcC--CCEEEEEEEEEC--CCCCCceEcCcccceeEEEecCCCCeEEEEccCCC-----------CCcEEEE
Confidence            99999999973  233344555554  2222322   233566778889  89999988764           3457788


Q ss_pred             ecC--CCccccCCCeEEEeeCCeEEEEEcccCCCCCEEEEEEEEeCCeeEEE-EEEEEEecCCCCCCeee-eecCceeec
Q psy16863        287 RAQ--GDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTA-KFELSVESQVPDAPAFI-RRLHDIAVK  362 (1075)
Q Consensus       287 ~~~--~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~p~~~-~~~~~~~v~  362 (1075)
                      +++  ++............  ....|.|.+++.+|+|.|+|.+.+..+.... ...+.+..  ..+|.+. ..+....+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~~~v~~--~~~~~v~~~~~~~~~v~  237 (772)
T 3v2a_R          162 CARYPEKRFVPDGNRISWD--SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVG--YRIYDVVLSPSHGIELS  237 (772)
T ss_dssp             EEETTTEEECCCSSSCEEE--TTTEEEEEGGGTTTCSEEEEEEEETTEEEECCEEEEEEEC--CCEEEEEEECCSCEEEE
T ss_pred             EecCCCccccCCCceeecC--CCCCeEecCCChhhCeEEEEEEEECCceEEEEEEEEEEec--CccceeeeCCCCceEEe
Confidence            876  55444422221111  2236999999999999999999986554322 23343432  2233333 333457899


Q ss_pred             cCCeEEEEEEEec--CCCcEEEEEECCEecCCCCcEEEE--------EcCCEEEEEEcccCCCCceeEEEEEEeCCCcee
Q psy16863        363 VGTRARLLVEIRS--PTEIKIHWYRNDRKLEENKIYRTQ--------HDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSH  432 (1075)
Q Consensus       363 ~G~~v~l~C~~~g--~p~~~v~W~k~g~~l~~~~~~~~~--------~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~  432 (1075)
                      +|++++|.|.+.+  .+.+.|.|+++|..+.........        .......|.|.+++.+|+|.|+|.|.|..|...
T Consensus       238 ~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~  317 (772)
T 3v2a_R          238 VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKK  317 (772)
T ss_dssp             TTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEE
T ss_pred             cCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCccee
Confidence            9999999999987  456799999999887654332211        112345799999999999999999999999888


Q ss_pred             eEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccCCC----EEEEEeCCCCCCCcEEE
Q psy16863        433 CSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD----IFALTANPKDPSSLGTY  508 (1075)
Q Consensus       433 ~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~----~~~l~i~~~~~~d~G~Y  508 (1075)
                      .+..|.|..+|...... .......+.+|+.+.|.|.+.|+|.+.+.|+|+|..+....    ...|.|..+..+|+|.|
T Consensus       318 ~~~~l~V~~~p~~~~~~-~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~L~i~~v~~~d~G~Y  396 (772)
T 3v2a_R          318 NSTFVRVHEKPFVAFGS-GMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNY  396 (772)
T ss_dssp             EEEEEEEECCCC--------------------------------------------------------------------
T ss_pred             EEEEEEEeCCCeeEecc-CCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCceEccceeEEEecCChhcCceE
Confidence            88888888765432111 01122347889999999999999999999999999887542    25788899999999999


Q ss_pred             EEEEEecceeeEEEE--EEEEeccccccCCCCCCcCCCCCCCCCCeeeee---ccceEeecCCeEEEEEEEecCCCCceE
Q psy16863        509 TCEAVNCMGAAFSTS--RVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKE---VENVKAKIGTSAILECQVLVPPWPRSI  583 (1075)
Q Consensus       509 ~C~a~n~~g~~~~~~--~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~G~~~~L~C~~~~~p~p~~v  583 (1075)
                      +|.|.|..|....+.  .|.|..                    +|.+...   .....+.+|+.++|.|.+.+.|.|..+
T Consensus       397 ~C~a~n~~g~~~~s~~~~l~v~~--------------------~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v  456 (772)
T 3v2a_R          397 TVILTNPISKEKQSHVVSLVVYV--------------------PPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHI  456 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEECCcCeEEEEEEEEEEec--------------------CCcccccccCCCccccCCCCcEEEEeEeccCCCCcEE
Confidence            999999998765444  344331                    2222111   111237889999999999999988449


Q ss_pred             EEEeCCeE--------------------------------EecC-CcEEEEEc-CCceEEEEEeeeeecCCceEEEEEEC
Q psy16863        584 YWYNKEGV--------------------------------VEAS-DKYHIMAD-GLGGYSIEINYLEAVDDGEWKCVATS  629 (1075)
Q Consensus       584 ~W~~~~~~--------------------------------i~~~-~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n  629 (1075)
                      .|++++..                                +... .+..+... ......|.|.++  +|+|.|+|.|.|
T Consensus       457 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N  534 (772)
T 3v2a_R          457 HWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKCEAVN  534 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEEEEEEc
Confidence            99997432                                1100 01111111 111246777776  799999999999


Q ss_pred             CCCceeeeeEEEEEeCCCCcCCCceeeccceeeecCCeEEEEEEEecCCCCeEEEEECCEEcCCCCe-------------
Q psy16863        630 SSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDV-------------  696 (1075)
Q Consensus       630 ~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~-------------  696 (1075)
                      ..|.... ...+.|..+     |.+.......+.+|+.+.|.|.+.|.|.+.++|+|+|..+.....             
T Consensus       535 ~~g~~~~-~~~l~V~~~-----p~i~~~p~~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~  608 (772)
T 3v2a_R          535 KVGRGER-VISFHVTRG-----PEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDT  608 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccce-eEEEEEECC-----ceeeccCCcccccCCceEEEEeccCCCCCCcEEEEcCCcccccccCcccccccccccc
Confidence            9997653 345555543     333333333466889999999999999999999998876542211             


Q ss_pred             ------------------EEEe--ecCCCceEEEEEEecCceEEE--EEEEEEEeccccCchhhhhhhccCCCCCeEEec
Q psy16863        697 ------------------YQLT--GTSSLGSYCCVAKNVMGKAES--STQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEG  754 (1075)
Q Consensus       697 ------------------~~~~--~~~d~G~Y~C~a~N~~g~~~~--~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~  754 (1075)
                                        +.+.  ..+|+|.|+|.|.|..|....  ...|.|..                ..+|.|...
T Consensus       609 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~----------------~~~P~~~~~  672 (772)
T 3v2a_R          609 LWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLE----------------RVAPTITGN  672 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccc----------------cCCCEeecC
Confidence                              2222  347999999999997655432  34555532                158888888


Q ss_pred             cceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEE
Q psy16863        755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITS  834 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s  834 (1075)
                      +.+..+.+|+.+.|.|.+.|.|.|.|+|+|||.+|..+.++.+..   +...|.|.+++.+|+|.|+|.|.|.+|.+.++
T Consensus       673 ~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~  749 (772)
T 3v2a_R          673 LENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD---GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVE  749 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCCCCeEEcC---CCcEEEECcCCHHHCEEEEEEEEeCCcceeEE
Confidence            888889999999999999999999999999999998877665542   23589999999999999999999999999999


Q ss_pred             EEEEEEecCC
Q psy16863        835 CFLKLNVPKH  844 (1075)
Q Consensus       835 ~~l~V~~~~~  844 (1075)
                      +.|.|..+|.
T Consensus       750 ~~l~V~~~p~  759 (772)
T 3v2a_R          750 AFFIIEGAQE  759 (772)
T ss_dssp             ----------
T ss_pred             EEEEEECCCC
Confidence            9999987653

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=4.9e-49  Score=467.75  Aligned_cols=445  Identities=15%  Similarity=0.207  Sum_probs=308.4

Q ss_pred             EEeCCCceeeEEEEEeecCCCCCCCeeeeec-ceEEecCCeEEEEEEEECCCCCeEEEEeCCEecc-CCCEEEEEeCCCC
Q psy16863        424 AENAVGRSHCSCELSVLVPKAYKAPFFTKEL-EAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK-AGDIFALTANPKD  501 (1075)
Q Consensus       424 a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~-~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~-~~~~~~l~i~~~~  501 (1075)
                      +.+..|.......|.|.++|.     +.... ...+.+|+.++|.|.+.+    .++|+|++.++. .+....|.|..+.
T Consensus        18 ~~~~~g~~~~~i~l~v~~pP~-----i~~~~~~~~v~~G~~v~l~C~~~~----~v~W~~~~~~~~~~~~~~~L~I~~~~   88 (524)
T 2ec8_A           18 LRVQTGSSQPSVSPGEPSPPS-----IHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDETNENKQNEWITEKAE   88 (524)
T ss_dssp             C--------------CCCCCE-----EESCCSEEECCTTSCEEEEEECTT----EEEEEEESSSCCEEECSSEEEESSCC
T ss_pred             hhhhcCCCCCeEEcCCCCCCc-----cCCCCceEEEeCCCeEEEEEeCCc----eEEEcCCCccccccCccceEEEcccc
Confidence            445556666677777877654     33332 334789999999999876    899999998773 2233579999999


Q ss_pred             CCCcEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEecCCCCc
Q psy16863        502 PSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPR  581 (1075)
Q Consensus       502 ~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~  581 (1075)
                      .+|+|.|+|.|.|  |. ..+..|.|..                   ++..+ ..+.+..+.+|+.++|.|.+.+.+.+ 
T Consensus        89 ~~D~G~Y~C~a~n--g~-~~~~~l~V~~-------------------p~~~~-~~~~~~~v~~G~~v~l~C~~~~~~~~-  144 (524)
T 2ec8_A           89 ATNTGKYTCTNKH--GL-SNSIYVFVRD-------------------PAKLF-LVDRSLYGKEDNDTLVRCPLTDPEVT-  144 (524)
T ss_dssp             STTCEEEEEEETT--SC-EEEEEEECCC-------------------SSCSB-CCCCCCCEETTSCEEECCCBSCCCCS-
T ss_pred             hhhCEEEEEeecC--Cc-ceEEEEEECC-------------------CCccc-ccccceEEEcCCeEEEECcCCCCccc-
Confidence            9999999999999  53 5556666542                   22222 45666788999999999999987645 


Q ss_pred             eEEEEe-CCeEEecCCcEEEEEcCCceEEEEEeeeeecCCc-eEEEEEECCCCceeeeeEEEEEeCCCCcCCCceeeccc
Q psy16863        582 SIYWYN-KEGVVEASDKYHIMADGLGGYSIEINYLEAVDDG-EWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLK  659 (1075)
Q Consensus       582 ~v~W~~-~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~  659 (1075)
                      .+.|++ ++..+..+.++.+..++    .|.|.+++.+|+| .|+|.|.|..|........|.|...+ ..+|.+.....
T Consensus       145 ~v~W~~~~g~~l~~~~~~~~~~~~----~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~-~~~p~i~~~~~  219 (524)
T 2ec8_A          145 NYSLKGCQGKPLPKDLRFIPDPKA----GIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAF-KAVPVVSVSKA  219 (524)
T ss_dssp             CEEEECSSSCCCCSSCEEEEETTT----EEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCC-CSCCEEECSCS
T ss_pred             eEEEEccCCcCcCCCCceeECCCc----cEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCC-CCCCcEEecCC
Confidence            899998 67777666666655443    7999999999999 99999999877654434566665211 23455544433


Q ss_pred             e-eeecCCeEEEEEEEecCCCCe-EEEEECCEEc--CCCC--------------eEEEe--ecCCCceEEEEEEecCceE
Q psy16863        660 A-VMTDDGLVSFECKVVGFPTPT-LQWFKDNEEL--KPGD--------------VYQLT--GTSSLGSYCCVAKNVMGKA  719 (1075)
Q Consensus       660 ~-~~~~g~~~~l~C~v~g~p~p~-v~W~k~g~~l--~~~~--------------~~~~~--~~~d~G~Y~C~a~N~~g~~  719 (1075)
                      . .+.+|+.+.|.|.+.|.|.|. ++|+|++..+  ....              .+.+.  ..+|+|.|+|.|.|..|..
T Consensus       220 ~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~  299 (524)
T 2ec8_A          220 SYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSA  299 (524)
T ss_dssp             EEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEE
T ss_pred             cceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCce
Confidence            3 477899999999999999886 9999999873  2211              12222  2379999999999999999


Q ss_pred             EEEEEEEEEeccccCchhhhhhhccCCCCCeEEecc---ceeeeecCCeEEEEEEEecCCCCe-EEEEECCEEeecCC-c
Q psy16863        720 ESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL---KSCQATVNEEFKFTVQVSISPEPK-VSWFRDDQQVVESD-N  794 (1075)
Q Consensus       720 ~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~~~g~~~~l~C~v~g~p~p~-v~W~k~g~~i~~~~-~  794 (1075)
                      ..++.|.|..                  +|.+...+   ....+..|+.+.|.|.+.|.|.|. ++|+|+|.++.... +
T Consensus       300 ~~~~~l~V~~------------------~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~  361 (524)
T 2ec8_A          300 NVTTTLEVVD------------------KGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWED  361 (524)
T ss_dssp             EEEEEEEEES------------------SCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCC
T ss_pred             EEEEEEEEec------------------cCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccc
Confidence            9999999973                  66665433   367899999999999999999999 99999999987665 3


Q ss_pred             EEEEEeeC----cEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEE
Q psy16863        795 VKILKETL----GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKV  870 (1075)
Q Consensus       795 ~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v  870 (1075)
                      +... ...    ....|.|.+++.+|+|.|+|.|.|..|....++.|.|..+|     .+.....  ..+|   +|.|.+
T Consensus       362 ~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P-----~i~~~~~--~~~g---~l~C~~  430 (524)
T 2ec8_A          362 YPKS-ENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKP-----EILTYDR--LVNG---MLQCVA  430 (524)
T ss_dssp             EESC-CSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEE-----EEEEEEC--CSSS---CEEEEE
T ss_pred             eeEE-ccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEecCC-----eEeeccc--CcCc---EEEEEE
Confidence            3322 221    35689999999999999999999999999889999987654     4443332  3455   999999


Q ss_pred             EccCCCeeEEEECCEEcC-------------------CCCeeEE--EECCCCceeeEEEEEEEEeCCeeEEEEEEEEEec
Q psy16863        871 IGVPQPTLKWFKDGRELK-------------------AGDIHKI--ISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFE  929 (1075)
Q Consensus       871 ~g~p~p~v~W~k~g~~l~-------------------~~~~~~i--~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~  929 (1075)
                      .|.|.|.|+|+|||..+.                   ......+  .+......|+|.|+|.|+|.+|.+++++.|.|.+
T Consensus       431 ~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~e  510 (524)
T 2ec8_A          431 AGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKG  510 (524)
T ss_dssp             EEESCCEEECCCC----------CCCCCCCCCCC-CCSSSCEEEEEEECCCSCCC-----CEEECSSCEEECCCCCCC--
T ss_pred             EeecCCEEEEEECCCcccccccccCCCCceeeeeccCCCCcceEEEEEEEEEccCCEEEEEEEEcCCCceEEEEEEEEec
Confidence            999999999999987651                   0111111  1333334789999999999999999999999987


Q ss_pred             CChhhh
Q psy16863        930 DKSQIE  935 (1075)
Q Consensus       930 ~~~~~~  935 (1075)
                      ++..-+
T Consensus       511 ~~~~~~  516 (524)
T 2ec8_A          511 NNKEQI  516 (524)
T ss_dssp             ------
T ss_pred             CCHHHc
Confidence            655433

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=2.3e-46  Score=438.42  Aligned_cols=424  Identities=13%  Similarity=0.173  Sum_probs=283.6

Q ss_pred             ceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEE
Q psy16863        358 DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCEL  437 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l  437 (1075)
                      .+.|.+|++++|.|.+.+.|...+.|++++..+.....+.. .+.....|.|.+++.+|+|.|+|.|.|..|.......|
T Consensus        57 ~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~~-~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~v  135 (527)
T 3qs9_E           57 AVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL-QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTV  135 (527)
T ss_dssp             EEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEE
T ss_pred             eEEEeccccEEEEEEEecCCceeEEEEecCCccCcccccCC-CcceEEEEEECcCChhhCeeEEEEEEeccccEEEEEEE
Confidence            68899999999999999888899999999998866555432 22345679999999999999999999998877655555


Q ss_pred             EeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccCCC-----EEEEEeCCCCCCCcEEEEEEE
Q psy16863        438 SVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD-----IFALTANPKDPSSLGTYTCEA  512 (1075)
Q Consensus       438 ~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~-----~~~l~i~~~~~~d~G~Y~C~a  512 (1075)
                      .|.  +..   ............++.+.|.|.+.|+|.|.|+|++++..+....     ........+...|+|.|+|.|
T Consensus       136 ~v~--~~~---~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~G~Y~C~A  210 (527)
T 3qs9_E          136 SIR--NTL---LYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCA  210 (527)
T ss_dssp             EEC----------CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------CEEECCSEECCCCSSCEEEEE
T ss_pred             EEC--Cce---eeccCCCcEEecCCceEEEEEEceecCCeEEEEECCCCCccccccCCcEEEEeeeeccccCCEEEEEEE
Confidence            554  221   1111111224567778999999999999999999988764221     112222334578999999999


Q ss_pred             EecceeeEEE-EEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEe-cCCCCceEEEEeCCe
Q psy16863        513 VNCMGAAFST-SRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVL-VPPWPRSIYWYNKEG  590 (1075)
Q Consensus       513 ~n~~g~~~~~-~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~-~~p~p~~v~W~~~~~  590 (1075)
                      .|..|..... +.|.|..                    +|.+  ++.+..+.+|+.+.|.|.+. +.|.| .|+|++++.
T Consensus       211 ~N~~G~~~~~~~~l~V~~--------------------~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p-~i~W~k~g~  267 (527)
T 3qs9_E          211 RNELGRECTRLFTIDLNQ--------------------TPQT--TLPQLFLKVGEPLWIRCKAVHVNHGF-GLTWELENK  267 (527)
T ss_dssp             ECSSCEEEEECEEEESSS--------------------CCCC--SCCEEEECTTSCEEEEEEEEESSSCC-CEEEECSSS
T ss_pred             EeCCCcccceEEEEEEec--------------------cCcc--CCCceEEeCCCeEEEEEEEccCCCCe-EEEEEECCE
Confidence            9999987664 4555431                    1112  34567889999999999997 78876 899999998


Q ss_pred             EEecCCcEEEEE--cC---CceEEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEEeCCCCcCCCceeeccceeeecC
Q psy16863        591 VVEASDKYHIMA--DG---LGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDD  665 (1075)
Q Consensus       591 ~i~~~~~~~~~~--~~---~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~~~~g  665 (1075)
                      .+.....+....  .+   .....|.|.+++.+|+|.|+|.|.|.    ......|.|..++.+....  ......+.+|
T Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~----~~~~~~L~V~~~p~i~~~~--~~~~~~v~~G  341 (527)
T 3qs9_E          268 ALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH----PSQSALVTIVEKGFINATN--SSEDYEIDQY  341 (527)
T ss_dssp             CCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE----EEEEEEEEEC--CEEECCC--SCCEECCCTT
T ss_pred             ECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC----CCceEEEEEEccCcccccc--CcccEEEcCC
Confidence            876554332211  11   11236999999999999999999998    2244566666543211100  0011235678


Q ss_pred             CeEEEEEEEecCCCCeEEEEECCEEcCCCC-------eEEEe--ecCCCceEEEEEEecCceEEEEEEEEEEeccccCch
Q psy16863        666 GLVSFECKVVGFPTPTLQWFKDNEELKPGD-------VYQLT--GTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSE  736 (1075)
Q Consensus       666 ~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~-------~~~~~--~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~~~  736 (1075)
                      +.+.|.|.+.|.|.|.++|+|+|..+..+.       .+.+.  ..+|+|.|+|.|.|..|....++.|.|.        
T Consensus       342 ~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~--------  413 (527)
T 3qs9_E          342 EEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR--------  413 (527)
T ss_dssp             CCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC----------
T ss_pred             CeEEEEEEEEecCCCEEEEEECCEECcCCcccccCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEe--------
Confidence            899999999999999999999999886543       34444  3479999999999999999999999887        


Q ss_pred             hhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCc------E----EEEEeeCcEEE
Q psy16863        737 EDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDN------V----KILKETLGVCH  806 (1075)
Q Consensus       737 ~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~------~----~~~~~~~~~~~  806 (1075)
                                .+|.|.....        ...|.|.+.|.|.|.|+|+|++........      .    ...........
T Consensus       414 ----------~~P~i~~~~~--------~~~l~C~a~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (527)
T 3qs9_E          414 ----------RKPQVLAEAS--------ASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSS  475 (527)
T ss_dssp             ----------CCCEEEECCC--------CE---EEEECSSCCEEEEECCC-----CCCCCCCCEEEC---------CEEE
T ss_pred             ----------cCCeEEEeCC--------CCEEEEEEEEEcCCeEEEEECCCCcCCCccccccccceeccccccCCceEEE
Confidence                      5888876542        235799999999999999998765421110      0    00011111223


Q ss_pred             EEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEec
Q psy16863        807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP  842 (1075)
Q Consensus       807 L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~  842 (1075)
                      +.+.-...+|+|.|+|.|.|.+|.+..++.|.|..|
T Consensus       476 s~L~i~~~~d~G~Y~C~A~N~~G~~~~~~~L~V~~p  511 (527)
T 3qs9_E          476 STLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGP  511 (527)
T ss_dssp             EECCCCCSSCSCEEEEEEECSSCEEEEEEEC-----
T ss_pred             EEEEEEEcCCCEEEEEEEEeCCCCceeEEEEecCCC
Confidence            333333456999999999999999998888876543

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=6.2e-46  Score=434.79  Aligned_cols=402  Identities=15%  Similarity=0.173  Sum_probs=281.0

Q ss_pred             eEEecCCeEEEEEEEECCCCCeEEEEeCCEeccCC--------CEEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEE
Q psy16863        456 AILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAG--------DIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIA  527 (1075)
Q Consensus       456 ~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~--------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v  527 (1075)
                      ..+.+|++++|.|.+.+.|...+.|++++..+...        ....|.|.++..+|+|.|+|.|.|..|.......+.|
T Consensus        58 ~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~v~v  137 (527)
T 3qs9_E           58 VEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSI  137 (527)
T ss_dssp             EEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEE
T ss_pred             EEEeccccEEEEEEEecCCceeEEEEecCCccCcccccCCCcceEEEEEECcCChhhCeeEEEEEEeccccEEEEEEEEE
Confidence            44889999999999998888899999999975432        2345999999999999999999999988777666666


Q ss_pred             eccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCCce
Q psy16863        528 RGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGG  607 (1075)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~  607 (1075)
                      ..                     ..+...........|+.+.|.|.+.|.|.| .|.|++++..+.....     .....
T Consensus       138 ~~---------------------~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P-~i~W~~~~~~~~~~~~-----~~~~~  190 (527)
T 3qs9_E          138 RN---------------------TLLYTLRRPYFRKMENQDALVCISESVPEP-IVEWVLCDSQGESCKE-----ESPAV  190 (527)
T ss_dssp             C--------------------------CEEEEEEEECSSSSCEEEEEEESSCC-EEEEEEC------------------C
T ss_pred             CC---------------------ceeeccCCCcEEecCCceEEEEEEceecCC-eEEEEECCCCCccccc-----cCCcE
Confidence            41                     111111222334567888999999999988 8999998876532111     11112


Q ss_pred             EEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEEeCCCCcCCCceeeccceeeecCCeEEEEEEEe-cCCCCeEEEEE
Q psy16863        608 YSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVV-GFPTPTLQWFK  686 (1075)
Q Consensus       608 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~l~C~v~-g~p~p~v~W~k  686 (1075)
                      .......+...|+|.|+|.|.|..|........+.|..++.. +|     ....+.+|+.+.|.|.+. |.|.|.|+|+|
T Consensus       191 ~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~-~p-----~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k  264 (527)
T 3qs9_E          191 VKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQT-TL-----PQLFLKVGEPLWIRCKAVHVNHGFGLTWEL  264 (527)
T ss_dssp             EEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCC-SC-----CEEEECTTSCEEEEEEEEESSSCCCEEEEC
T ss_pred             EEEeeeeccccCCEEEEEEEEeCCCcccceEEEEEEeccCcc-CC-----CceEEeCCCeEEEEEEEccCCCCeEEEEEE
Confidence            233344566889999999999999987654455666554433 11     133567899999999997 89999999999


Q ss_pred             CCEEcCCCCeE-----------------EEe--ecCCCceEEEEEEecCceEEEEEEEEEEeccccCchhhhhhhccCCC
Q psy16863        687 DNEELKPGDVY-----------------QLT--GTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNK  747 (1075)
Q Consensus       687 ~g~~l~~~~~~-----------------~~~--~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~  747 (1075)
                      +|..+..+..+                 .+.  ..+|+|.|+|.|.|.   ...++.|.|..                  
T Consensus       265 ~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~------------------  323 (527)
T 3qs9_E          265 ENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVE------------------  323 (527)
T ss_dssp             SSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC-------------------
T ss_pred             CCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEc------------------
Confidence            99877654322                 222  237999999999997   56677787763                  


Q ss_pred             CCeEEecc--ceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEE
Q psy16863        748 APKFIEGL--KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT  825 (1075)
Q Consensus       748 ~p~~~~~~--~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~  825 (1075)
                      +|.+....  ....+.+|+.+.|.|.+.|.|.|.|+|+|||++|..+.++..     ....|.|.+++.+|+|.|+|.|.
T Consensus       324 ~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~-----~~~~L~I~~v~~~D~G~YtC~A~  398 (527)
T 3qs9_E          324 KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLD-----NGYSISKFCNHKHQPGEYIFHAE  398 (527)
T ss_dssp             -CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCS-----SSSEEEEECCCTTCCSCEEEEEE
T ss_pred             cCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCccccc-----CCcEEEEecCCcccCEEEEEEEE
Confidence            44443322  346688999999999999999999999999999977655321     22479999999999999999999


Q ss_pred             eCCceEEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCCeeEEEECCEEcCC----------------
Q psy16863        826 NDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKA----------------  889 (1075)
Q Consensus       826 N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~----------------  889 (1075)
                      |..|....++.|.|..+     |.+....     .|  ..|.|.+.|.|.|.|+|+|++.....                
T Consensus       399 N~~g~~~~~~~L~V~~~-----P~i~~~~-----~~--~~l~C~a~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~  466 (527)
T 3qs9_E          399 NDDAQFTKMFTLNIRRK-----PQVLAEA-----SA--SQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANR  466 (527)
T ss_dssp             ETTEEEEEEEEEC--CC-----CEEEECC-----CC--E---EEEECSSCCEEEEECCC-----CCCCCCCCEEEC----
T ss_pred             eCCCcEEEEEEEEEecC-----CeEEEeC-----CC--CEEEEEEEEEcCCeEEEEECCCCcCCCccccccccceecccc
Confidence            99999999998888864     4444332     12  36899999999999999998654311                


Q ss_pred             ---CC-eeEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEe
Q psy16863        890 ---GD-IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGF  928 (1075)
Q Consensus       890 ---~~-~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~  928 (1075)
                         +. .....+......|+|.|+|.|.|.+|.++..+.|.|.
T Consensus       467 ~~~~~~~~~s~L~i~~~~d~G~Y~C~A~N~~G~~~~~~~L~V~  509 (527)
T 3qs9_E          467 KVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSP  509 (527)
T ss_dssp             -----CEEEEECCCCCSSCSCEEEEEEECSSCEEEEEEEC---
T ss_pred             ccCCceEEEEEEEEEEcCCCEEEEEEEEeCCCCceeEEEEecC
Confidence               00 1111222223458999999999999999998888653

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=3.5e-46  Score=434.37  Aligned_cols=408  Identities=15%  Similarity=0.175  Sum_probs=300.1

Q ss_pred             ceEEecCCeEEEEEEEECCCCCeE-----EEEeCCEeccCCCEEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEec
Q psy16863        455 EAILTEQGTVSLECKVMGIPTPQL-----IWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARG  529 (1075)
Q Consensus       455 ~~~~~~g~~v~l~C~~~g~p~~~v-----~W~~~g~~l~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~  529 (1075)
                      ...+.+|+++.|.|.+.| |.|.+     .|+|++..+.......|.|.++.. |+| |+|.|.|..+.....+.|.|..
T Consensus         8 ~~~v~~G~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~~~~~~~~~l~i~~v~~-d~g-Y~C~a~~~~~~~~~~~~l~V~~   84 (450)
T 1z7z_I            8 KVILPRGGSVLVTCSTSC-DQPMLLGIETPLPKKELLLPGNNRKVYELSNVQE-DSQ-PMCYSNCPDGQSTAKTFLTVYW   84 (450)
T ss_dssp             EEEEETTEEEEEEEECCS-SCCCEEEECSSSCEEECCSSTTTEEEEEEEEECS-CBC-CEEEEEETTEEEEEECEEEEEB
T ss_pred             ceEEecCCcEEEEEEccC-CCcccccccceeeecceEecCCCceEEEEEeccc-CCe-eEEEEeCCCCcceeEEEEEEEe
Confidence            345789999999999999 88988     999999877766777888888876 999 9999998878777788888862


Q ss_pred             cccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEecCCCCc--eEEEEeCCeEEecCCcEEEEEcCCce
Q psy16863        530 QQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPR--SIYWYNKEGVVEASDKYHIMADGLGG  607 (1075)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~--~v~W~~~~~~i~~~~~~~~~~~~~~~  607 (1075)
                                         +|..+...+.+..+.+|+.++|.|.+.+.|.|.  .|.|++++..+.......    ....
T Consensus        85 -------------------~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~----~~~~  141 (450)
T 1z7z_I           85 -------------------TPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG----EPAE  141 (450)
T ss_dssp             -------------------CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCT----TTEE
T ss_pred             -------------------CCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccc----cccc
Confidence                               344455566778899999999999999988654  799999999886443211    1223


Q ss_pred             EEEEEeeeeecCCceEEEEEECCCCceee-------eeEEEEEeCCCCcCCCceeeccceeeecCCeEEEEEEEecC-C-
Q psy16863        608 YSIEINYLEAVDDGEWKCVATSSSGVKQF-------SAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGF-P-  678 (1075)
Q Consensus       608 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-------~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~l~C~v~g~-p-  678 (1075)
                      ..|.|.++..+|+|.|+|.|.|..|....       ....+.|...+ ..+|.+...  ..+.+|+.+.|.|.+.|. | 
T Consensus       142 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~-~~~p~~~~~--~~v~~G~~v~l~C~~~g~~P~  218 (450)
T 1z7z_I          142 VTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLP-ATPPQLVSP--RVLEVDTQGTVVCSLDGLFPV  218 (450)
T ss_dssp             EEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCC-SSCCEEECC--SEEETTSEEEEEEEEESCTTG
T ss_pred             eEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccC-CCCCEecCc--eeEEeCCcEEEEEEeeCCCCC
Confidence            58999999999999999999999774321       12234444331 234444332  357789999999999998 7 


Q ss_pred             -CCeEEEEECCEEcCCC-----CeEEEe-----ecCCCc--eEEEEEEecCceEEEEEEEEEEeccccCchhhhhhhccC
Q psy16863        679 -TPTLQWFKDNEELKPG-----DVYQLT-----GTSSLG--SYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTN  745 (1075)
Q Consensus       679 -~p~v~W~k~g~~l~~~-----~~~~~~-----~~~d~G--~Y~C~a~N~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~  745 (1075)
                       .+.++|+++|..+...     +.+.+.     ..+|.|  .|+|.|.|..|....++.|.|...               
T Consensus       219 ~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~---------------  283 (450)
T 1z7z_I          219 SEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF---------------  283 (450)
T ss_dssp             GGCEEEEEETTEECCCEEEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECC---------------
T ss_pred             CceEEEEeCCCEeCCceEEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecC---------------
Confidence             7899999999987652     222221     357999  999999999999999999998853               


Q ss_pred             CCCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEE
Q psy16863        746 NKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT  825 (1075)
Q Consensus       746 ~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~  825 (1075)
                       .+|.+..  ....+.+|+.+.|.|.+.  |.|.++|  +|.++....         ....|.|.++..+|+|.|+|.|.
T Consensus       284 -~~p~i~~--~~~~v~~G~~v~l~C~~~--p~p~i~W--~g~~~~~~~---------~~~~L~i~~~~~~d~G~Y~C~a~  347 (450)
T 1z7z_I          284 -PAPNVIL--TKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG---------PRAQLLLKATPEDNGRSFSCSAT  347 (450)
T ss_dssp             -CCCEEEE--SCSEEETTCEEEEEEEC--------------------C---------CCCCEEEECCGGGTTCEEEEEEE
T ss_pred             -CCCeEec--CCeeEeCCCcEEEEEecC--CCCEeEE--CCEEcCCCC---------ceEEEEEecCcccCCceEEEEEE
Confidence             2455543  345789999999999998  9999999  888772211         12379999999999999999999


Q ss_pred             eCCc-e---EEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCCeeEEEECCEEcCC-CCeeEEEECCC
Q psy16863        826 NDFG-Q---SITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKA-GDIHKIISGED  900 (1075)
Q Consensus       826 N~~G-~---~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~-~~~~~i~~~~~  900 (1075)
                      |..| .   ...++.|.|..+|.+.....  +....+.+|+.++|.|.+.|.|.|.|+|+|||..+.. |...     ..
T Consensus       348 n~~~g~~~~~~~~~~l~V~~~P~~~~~~~--p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~g~~~-----~v  420 (450)
T 1z7z_I          348 LEVAGQLIHKNQTRELRVLYGPRLDERDC--PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESV-----TV  420 (450)
T ss_dssp             EEETTEEEEEEEEEECEEEEEEECCSTTS--CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTSCE-----EC
T ss_pred             cCCCCcccccceeEEEEEecCCceeeccC--CCceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCCCCeE-----eE
Confidence            7665 3   34678888887765433210  1122477899999999999999999999999985443 4332     24


Q ss_pred             CceeeEEEEEEEEeCCeeEEEEEEEEEec
Q psy16863        901 GTCCLGIYTCEAHNCMGTTSSSAALLGFE  929 (1075)
Q Consensus       901 ~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~  929 (1075)
                      ...|+|.|+|.|.|.+|.+++++.|.|..
T Consensus       421 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  449 (450)
T 1z7z_I          421 TRDLEGTYLCRARSTQGEVTREVTVNVLS  449 (450)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             ehhhCeEEEEEEEeCCCceeEEEEEEEEc
Confidence            55789999999999999999999998864

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=6e-45  Score=439.33  Aligned_cols=421  Identities=16%  Similarity=0.229  Sum_probs=318.2

Q ss_pred             eEEecCCeEEEEEEEECCCCC---eEEEEeCCEecc-------------------------CCCEEEEEeCCCCCCCcEE
Q psy16863        456 AILTEQGTVSLECKVMGIPTP---QLIWYKDNKKIK-------------------------AGDIFALTANPKDPSSLGT  507 (1075)
Q Consensus       456 ~~~~~g~~v~l~C~~~g~p~~---~v~W~~~g~~l~-------------------------~~~~~~l~i~~~~~~d~G~  507 (1075)
                      ..+.+|+.+.|.|.+.+.|.+   .+.|+|++..+.                         .+..+.|.|.++..+|+|.
T Consensus        10 v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~   89 (585)
T 2ocw_A           10 VNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGR   89 (585)
T ss_pred             eEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCcccCEE
Confidence            347899999999999987654   899999985321                         1223568999999999999


Q ss_pred             EEEEEEecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEecCCCCceEEEEe
Q psy16863        508 YTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYN  587 (1075)
Q Consensus       508 Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~  587 (1075)
                      |+|.|.|..|.....+.|.|..                    +|.+...+....+.+|+.++|.|.+.+.+.+..+.|++
T Consensus        90 Y~C~~~n~~~~~~~~~~l~V~~--------------------~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k  149 (585)
T 2ocw_A           90 YKCGLGINSRGLSFDVSLEVSQ--------------------GPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYK  149 (585)
T ss_pred             EEEEcccCCCCceEEEEEEEec--------------------CccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEE
Confidence            9999999998888888888862                    34555567778899999999999999766555899999


Q ss_pred             CCeEEe----c---------CCcEEEEEcCC--ceEEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEEeCCCCcCCC
Q psy16863        588 KEGVVE----A---------SDKYHIMADGL--GGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKP  652 (1075)
Q Consensus       588 ~~~~i~----~---------~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p  652 (1075)
                      ++....    .         ..++.+..++.  +.+.|.|.+++.+|+|.|+|.|.|..|... ....|.|..++    |
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-~~~~l~V~~~~----p  224 (585)
T 2ocw_A          150 QIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNK-KNADLQVLKPE----P  224 (585)
T ss_pred             CCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCcccc-ceEEEEEccCC----C
Confidence            886421    1         24555554442  346899999999999999999999988754 34566666542    2


Q ss_pred             ceeeccceeeecCCeEEEEEEEecCCC---CeEEEE-ECCEE---cC---------CCC-------------eEEEe--e
Q psy16863        653 RFVESLKAVMTDDGLVSFECKVVGFPT---PTLQWF-KDNEE---LK---------PGD-------------VYQLT--G  701 (1075)
Q Consensus       653 ~~~~~~~~~~~~g~~~~l~C~v~g~p~---p~v~W~-k~g~~---l~---------~~~-------------~~~~~--~  701 (1075)
                      .++     .+.+|+.+.|.|.+ +.|.   +.+.|+ ++|..   +.         ...             .+.+.  .
T Consensus       225 ~~~-----~~~~G~~v~l~C~~-~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~  298 (585)
T 2ocw_A          225 ELV-----YEDLRGSVTFHCAL-GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLR  298 (585)
T ss_pred             cee-----EEcCCCcEEEEEEc-CCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCC
Confidence            221     35578999999997 4444   689997 88731   11         011             22232  2


Q ss_pred             cCCCceEEEEEEecCceEE-----EEEEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecCC
Q psy16863        702 TSSLGSYCCVAKNVMGKAE-----SSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISP  776 (1075)
Q Consensus       702 ~~d~G~Y~C~a~N~~g~~~-----~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p  776 (1075)
                      .+|+|.|+|.|.|. |...     ..+.|.|.                  .+|.+...+....+.+|+.+.|.|.+.|.|
T Consensus       299 ~~d~G~Y~C~a~n~-g~~~~~~~~~~~~l~V~------------------~~p~~~~~~~~~~~~~G~~v~l~C~~~~~p  359 (585)
T 2ocw_A          299 KEDAGRYLCGAHSD-GQLQEGSPIQAWQLFVN------------------EESTIPRSPTVVKGVAGSSVAVLCPYNRKE  359 (585)
T ss_pred             hhhCEEEEEEEEcC-CCccccCceeeEEEEEe------------------cccccccCCcceEEEeCCcEEEEEecCCCC
Confidence            36899999999995 5444     67788887                  367777777788899999999999999999


Q ss_pred             CCeE----EEEE--CCE--Eeec---------CCcEEEEEe-eCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEE
Q psy16863        777 EPKV----SWFR--DDQ--QVVE---------SDNVKILKE-TLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK  838 (1075)
Q Consensus       777 ~p~v----~W~k--~g~--~i~~---------~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~  838 (1075)
                      .|.+    +|+|  ||.  .+..         ..++.+... ..+.+.|.|.+++.+|+|.|+|.| |..|....++.|.
T Consensus       360 ~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~  438 (585)
T 2ocw_A          360 SKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIK  438 (585)
T ss_pred             CccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEE
Confidence            9987    8999  887  5532         345555432 345667999999999999999999 9999988888888


Q ss_pred             EEecCCCCCCeeeeecceeecCCCeEEEEEEEE----ccCCCeeEEEECCEEcCCC----------------CeeEEEEC
Q psy16863        839 LNVPKHYKKPKFLEELKAVLSEGGAVNLECKVI----GVPQPTLKWFKDGRELKAG----------------DIHKIISG  898 (1075)
Q Consensus       839 V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~----g~p~p~v~W~k~g~~l~~~----------------~~~~i~~~  898 (1075)
                      |..++    |.+.......+.+|+.++|.|.+.    |.|.|.|+|+|||.++..+                ....|.+.
T Consensus       439 V~~~~----p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  514 (585)
T 2ocw_A          439 IIEGE----PNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLN  514 (585)
T ss_pred             EecCc----cccccCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEEC
Confidence            87642    222222333477999999999997    7788899999999877432                12467778


Q ss_pred             CCCceeeEEEEEEEEeCCeeEEEE-EEEEEecCC
Q psy16863        899 EDGTCCLGIYTCEAHNCMGTTSSS-AALLGFEDK  931 (1075)
Q Consensus       899 ~~~~~d~G~Y~C~a~N~~G~~~~~-~~l~v~~~~  931 (1075)
                      .....|+|.|+|.|.|.+|...+. +.|.|.+++
T Consensus       515 ~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p  548 (585)
T 2ocw_A          515 LVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK  548 (585)
T ss_pred             CCCcccCeEEEEEeEeCCCccEEEEEEEEEEeee
Confidence            888899999999999999977654 788888765

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=3.8e-46  Score=442.90  Aligned_cols=454  Identities=17%  Similarity=0.199  Sum_probs=317.7

Q ss_pred             EEEcCCeeEEEEEEEEEeecCCCcccceeecceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCCCceeccCc
Q psy16863        112 TASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNR  191 (1075)
Q Consensus       112 ~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~~~~~~~~~  191 (1075)
                      .+.|..|.....+.|.|.    .||.+.....+..+.+|++++|.|.+.+              .+.|++++..+    +
T Consensus        17 ~~~~~~g~~~~~i~l~v~----~pP~i~~~~~~~~v~~G~~v~l~C~~~~--------------~v~W~~~~~~~----~   74 (524)
T 2ec8_A           17 LLRVQTGSSQPSVSPGEP----SPPSIHPGKSDLIVRVGDEIRLLCTDPG--------------FVKWTFEILDE----T   74 (524)
T ss_dssp             CC--------------CC----CCCEEESCCSEEECCTTSCEEEEEECTT--------------EEEEEEESSSC----C
T ss_pred             hhhhhcCCCCCeEEcCCC----CCCccCCCCceEEEeCCCeEEEEEeCCc--------------eEEEcCCCccc----c
Confidence            345566655556666554    3577777777889999999999988753              67899988754    1


Q ss_pred             EEEEecCCeEEEEEceeccCCCeEEEEEEEcCceeEEEEEEEeeeccCCCCCccccccccceeeccceeEEEEEecCCCc
Q psy16863        192 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTE  271 (1075)
Q Consensus       192 ~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~  271 (1075)
                          ..+....|.|.+++.+|+|.|+|.|.|  |. +..+.|.|.    .+|.+...+.+..+.+|+.++|.|.+.++  
T Consensus        75 ----~~~~~~~L~I~~~~~~D~G~Y~C~a~n--g~-~~~~~l~V~----~p~~~~~~~~~~~v~~G~~v~l~C~~~~~--  141 (524)
T 2ec8_A           75 ----NENKQNEWITEKAEATNTGKYTCTNKH--GL-SNSIYVFVR----DPAKLFLVDRSLYGKEDNDTLVRCPLTDP--  141 (524)
T ss_dssp             ----EEECSSEEEESSCCSTTCEEEEEEETT--SC-EEEEEEECC----CSSCSBCCCCCCCEETTSCEEECCCBSCC--
T ss_pred             ----ccCccceEEEcccchhhCEEEEEeecC--Cc-ceEEEEEEC----CCCcccccccceEEEcCCeEEEECcCCCC--
Confidence                122335899999999999999999999  53 566777775    33444467788899999999998887642  


Q ss_pred             eEEEEecCCCeeeEEecCCCcccc-CCCeEEEeeCCeEEEEEcccCCCCCE-EEEEEEEeCCeeE-EEEEEEEEecCCCC
Q psy16863        272 IKCQFDLNNTIPFSFRAQGDHPIF-GNRFRAINRDGRTELNIRRVRRDDGG-RYSVTASNESGYS-TAKFELSVESQVPD  348 (1075)
Q Consensus       272 ~~c~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~L~I~~~~~~d~G-~Y~C~a~n~~g~~-~~~~~l~V~~~~~~  348 (1075)
                              +.+.+.|++.++..+. +.++.+...+   .|.|.+++.+|+| .|+|.|.|..|.. +..+.|.|......
T Consensus       142 --------~~~~v~W~~~~g~~l~~~~~~~~~~~~---~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~  210 (524)
T 2ec8_A          142 --------EVTNYSLKGCQGKPLPKDLRFIPDPKA---GIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKA  210 (524)
T ss_dssp             --------CCSCEEEECSSSCCCCSSCEEEEETTT---EEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCS
T ss_pred             --------ccceEEEEccCCcCcCCCCceeECCCc---cEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCC
Confidence                    3467889886666665 5555444322   7999999999999 9999999987654 34677888644456


Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcE-EEEEECCEec--CCCCcEEEEE---cCCEEEEEEcccCCCCceeEEE
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIK-IHWYRNDRKL--EENKIYRTQH---DGNFYFIDLSSVSLFDSGRWTC  422 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~-v~W~k~g~~l--~~~~~~~~~~---~g~~~~L~I~~v~~~d~G~Y~C  422 (1075)
                      +|.|...+....+.+|+++.|.|.+.+.|.+. |+|+|+|..+  ....+..+..   ......|.|.+++.+|+|.|+|
T Consensus       211 ~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C  290 (524)
T 2ec8_A          211 VPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMC  290 (524)
T ss_dssp             CCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEE
T ss_pred             CCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEE
Confidence            88998888888999999999999999988765 9999999883  3333322221   1234579999999999999999


Q ss_pred             EEEeCCCceeeEEEEEeecCCCCCCCeeeeec----ceEEecCCeEEEEEEEECCCCCe-EEEEeCCEeccCCC------
Q psy16863        423 LAENAVGRSHCSCELSVLVPKAYKAPFFTKEL----EAILTEQGTVSLECKVMGIPTPQ-LIWYKDNKKIKAGD------  491 (1075)
Q Consensus       423 ~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~----~~~~~~g~~v~l~C~~~g~p~~~-v~W~~~g~~l~~~~------  491 (1075)
                      .|.|..|....++.|.|..+|.     +...+    ...+.+|+.+.|.|.+.|.|.|. |+|+|+|.++....      
T Consensus       291 ~a~n~~g~~~~~~~l~V~~~p~-----~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~  365 (524)
T 2ec8_A          291 YANNTFGSANVTTTLEVVDKGF-----INIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKS  365 (524)
T ss_dssp             EEECSSCEEEEEEEEEEESSCE-----EEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESC
T ss_pred             EEEecCCceEEEEEEEEeccCc-----eEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEE
Confidence            9999999998888898886653     32222    23488999999999999999998 99999999886543      


Q ss_pred             --------EEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEee
Q psy16863        492 --------IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAK  563 (1075)
Q Consensus       492 --------~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  563 (1075)
                              ...|.|..+..+|+|.|+|.|.|..|....++.|.|..                    +|.+...+.   +.
T Consensus       366 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~--------------------~P~i~~~~~---~~  422 (524)
T 2ec8_A          366 ENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNT--------------------KPEILTYDR---LV  422 (524)
T ss_dssp             CSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECE--------------------EEEEEEEEC---CS
T ss_pred             ccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEec--------------------CCeEeeccc---Cc
Confidence                    35799999999999999999999999999988888863                    344433332   34


Q ss_pred             cCCeEEEEEEEecCCCCceEEEEeCCeEEec--------CCc---EEEEEcCCceEEEEEeeeeecCCceEEEEEECCCC
Q psy16863        564 IGTSAILECQVLVPPWPRSIYWYNKEGVVEA--------SDK---YHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSG  632 (1075)
Q Consensus       564 ~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~--------~~~---~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  632 (1075)
                      +|   +|.|.+.|.|.| .|.|+++++.+..        ..+   +....++.......+.....+|+|.|+|.|.|..|
T Consensus       423 ~g---~l~C~~~g~P~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G  498 (524)
T 2ec8_A          423 NG---MLQCVAAGFPEP-TIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVG  498 (524)
T ss_dssp             SS---CEEEEEEEESCC-EEECCCC----------CCCCCCCCCCC-CCSSSCEEEEEEECCCSCCC-----CEEECSSC
T ss_pred             Cc---EEEEEEEeecCC-EEEEEECCCcccccccccCCCCceeeeeccCCCCcceEEEEEEEEEccCCEEEEEEEEcCCC
Confidence            56   999999999988 8999999876521        111   11112221111122444446999999999999999


Q ss_pred             ceeeeeEEEEEe
Q psy16863        633 VKQFSAAYVHVL  644 (1075)
Q Consensus       633 ~~~~~~~~l~v~  644 (1075)
                      ..... +.|.|.
T Consensus       499 ~~~~~-~~l~V~  509 (524)
T 2ec8_A          499 KTSAY-FNFAFK  509 (524)
T ss_dssp             EEECC-CCCCC-
T ss_pred             ceEEE-EEEEEe
Confidence            87633 344444

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=5.2e-44  Score=431.13  Aligned_cols=451  Identities=17%  Similarity=0.194  Sum_probs=333.9

Q ss_pred             eecceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCCCce-----e---------ccCcEEEEe--cCCeEEE
Q psy16863        140 RRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHP-----I---------FGNRFRAIN--RDGRTEL  203 (1075)
Q Consensus       140 ~~~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~~~~-----~---------~~~~~~~~~--~~~~~~L  203 (1075)
                      ..+.++.+.+|++++|.|.+.+.+.       .....+.|++++...     .         ..+|+.+..  .++.+.|
T Consensus         5 ~~P~~v~v~~G~~v~L~C~~~~~~~-------~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L   77 (585)
T 2ocw_A            5 FGPEEVNSVEGNSVSITCYYPPTSV-------NRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVV   77 (585)
T ss_pred             cCcceeEEecCCcEEEEEeCCCCcC-------CCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEE
Confidence            3456788999999999998876421       112478899987532     1         234665544  4566789


Q ss_pred             EEceeccCCCeEEEEEEEcCceeEEEEEEEeeeccCCCCCccccccccceeeccceeEEEEEecCCCceEEEEecCCCee
Q psy16863        204 NIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIP  283 (1075)
Q Consensus       204 ~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~  283 (1075)
                      +|.+++.+|+|.|+|.|.|..|..+..+.|.|.    .+|.|...+.+..+.+|+.++|.|.+.+.         .++..
T Consensus        78 ~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~----~~p~~~~~~~~~~v~~G~~v~l~C~~~~~---------~~~~~  144 (585)
T 2ocw_A           78 NIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVS----QGPGLLNDTKVYTVDLGRTVTINCPFKTE---------NAQKR  144 (585)
T ss_pred             EECCCCcccCEEEEEEcccCCCCceEEEEEEEe----cCccccCCCccEEEEcCCCEEEEEEecCC---------CCCcc
Confidence            999999999999999999998888888888886    45778888888999999999999887642         12345


Q ss_pred             eEEecCCCccc-------------cCCCeEEEeeCC---eEEEEEcccCCCCCEEEEEEEEeCCeeEEEEEEEEEecCCC
Q psy16863        284 FSFRAQGDHPI-------------FGNRFRAINRDG---RTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP  347 (1075)
Q Consensus       284 ~~w~~~~~~~~-------------~~~~~~~~~~~~---~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~  347 (1075)
                      +.|+++++...             ...++.+...+.   ..+|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..   
T Consensus       145 v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~---  221 (585)
T 2ocw_A          145 KSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLK---  221 (585)
T ss_pred             EEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEcc---
Confidence            67777765421             134555554442   34899999999999999999999999888888888874   


Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCC---cEEEEE-ECCEe---c-C--------CCCcEEEEEc--CCEEEEEE
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTE---IKIHWY-RNDRK---L-E--------ENKIYRTQHD--GNFYFIDL  409 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~---~~v~W~-k~g~~---l-~--------~~~~~~~~~~--g~~~~L~I  409 (1075)
                      .+|      ..+.+.+|+.+.|.|.+ +.+.   +.+.|+ |||..   + .        ...++.+...  ...+.|.|
T Consensus       222 ~~p------~~~~~~~G~~v~l~C~~-~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i  294 (585)
T 2ocw_A          222 PEP------ELVYEDLRGSVTFHCAL-GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVI  294 (585)
T ss_pred             CCC------ceeEEcCCCcEEEEEEc-CCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEE
Confidence            233      23467899999999998 4443   789997 88842   1 1        1334444432  34457999


Q ss_pred             cccCCCCceeEEEEEEeCCCcee-----eEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCCeE----EE
Q psy16863        410 SSVSLFDSGRWTCLAENAVGRSH-----CSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQL----IW  480 (1075)
Q Consensus       410 ~~v~~~d~G~Y~C~a~n~~g~~~-----~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v----~W  480 (1075)
                      .+++.+|+|.|+|.|.|. |...     .++.|.|..+|.+..    .+....+.+|+.+.|.|.+.|.|.+.+    +|
T Consensus       295 ~~v~~~d~G~Y~C~a~n~-g~~~~~~~~~~~~l~V~~~p~~~~----~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W  369 (585)
T 2ocw_A          295 TGLRKEDAGRYLCGAHSD-GQLQEGSPIQAWQLFVNEESTIPR----SPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLW  369 (585)
T ss_pred             ccCChhhCEEEEEEEEcC-CCccccCceeeEEEEEeccccccc----CCcceEEEeCCcEEEEEecCCCCCccEEEEEEE
Confidence            999999999999999996 4443     677888877654321    122234779999999999999999976    79


Q ss_pred             Ee--CCE--eccC--------------------CCEEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEeccccccCC
Q psy16863        481 YK--DNK--KIKA--------------------GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDN  536 (1075)
Q Consensus       481 ~~--~g~--~l~~--------------------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~  536 (1075)
                      +|  ||.  .+..                    ...+.|.|..+..+|+|.|+|.| |..|.....+.|.|..       
T Consensus       370 ~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~-------  441 (585)
T 2ocw_A          370 EGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIE-------  441 (585)
T ss_pred             EccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEec-------
Confidence            99  887  4421                    12235899999999999999999 9999888888888863       


Q ss_pred             CCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEe----cCCCCceEEEEeCCeEEecCCc------EEEEEcCCc
Q psy16863        537 DDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVL----VPPWPRSIYWYNKEGVVEASDK------YHIMADGLG  606 (1075)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~----~~p~p~~v~W~~~~~~i~~~~~------~~~~~~~~~  606 (1075)
                                  .+|.+.. +....+.+|+.++|.|.+.    +.|.| .|.|++++..+.....      +........
T Consensus       442 ------------~~p~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~p~~-~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~  507 (585)
T 2ocw_A          442 ------------GEPNLKV-PGNVTAVLGETLKVPCHFPCKFSSYEKY-WCKWNNTGCQALPSQDEGPSKAFVNCDENSR  507 (585)
T ss_pred             ------------Ccccccc-CCceeEecCCcEEEEEEecCCCCCCccE-EEEEeecCceeeeccCCCCCcceEEecCccc
Confidence                        1233322 5677899999999999997    55655 8999999988754321      222222223


Q ss_pred             eEEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEEeCCC
Q psy16863        607 GYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPK  647 (1075)
Q Consensus       607 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~p~  647 (1075)
                      ...|.|.++..+|+|.|+|.|.|..|........|.|..++
T Consensus       508 ~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p  548 (585)
T 2ocw_A          508 LVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK  548 (585)
T ss_pred             EEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeee
Confidence            46899999999999999999999999877555778887765

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=100.00  E-value=5e-44  Score=424.53  Aligned_cols=437  Identities=15%  Similarity=0.192  Sum_probs=298.5

Q ss_pred             ecCceeeccCCeEEEEEEEecCCCcEEEEEECC--EecC------------CCCcEEEEEcCCEEEEEEcccCCCCceeE
Q psy16863        355 RLHDIAVKVGTRARLLVEIRSPTEIKIHWYRND--RKLE------------ENKIYRTQHDGNFYFIDLSSVSLFDSGRW  420 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g--~~l~------------~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y  420 (1075)
                      .+..+.+.+|++++|.|.+.+.|.+.|.|||++  ..+.            ...++.....+....|.|.+++.+|+|.|
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   85 (523)
T 2rcj_C            6 QPPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESDY   85 (523)
T ss_pred             cCCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCEEE
Confidence            456778999999999999998889999999975  2211            12456555566677899999999999999


Q ss_pred             EEEEEeCCCce---eeEEEEEeecCCCCCCCeeeee-cceEEecCCeEEEEEEEECCCCC--eEEEEeCCEeccCCCE--
Q psy16863        421 TCLAENAVGRS---HCSCELSVLVPKAYKAPFFTKE-LEAILTEQGTVSLECKVMGIPTP--QLIWYKDNKKIKAGDI--  492 (1075)
Q Consensus       421 ~C~a~n~~g~~---~~s~~l~V~~~~~~~~p~~~~~-~~~~~~~g~~v~l~C~~~g~p~~--~v~W~~~g~~l~~~~~--  492 (1075)
                      +|.|.|..|..   ...+.|.|...+. .+|.+... ....+.+|+.+.|.|.+.|.|++  .|+|+|||+++..+..  
T Consensus        86 ~C~a~n~~g~~~~~~~~~~l~V~~~~~-~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~  164 (523)
T 2rcj_C           86 YCASWNSSDNSYVFGTGTKVTVLGQPK-ANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETT  164 (523)
T ss_pred             EEEEccCCCccccccCceEEEeccCCC-cCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEec
Confidence            99999987642   2456677754332 23444332 23335678999999999998764  9999999998854321  


Q ss_pred             -------------EEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccc
Q psy16863        493 -------------FALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVEN  559 (1075)
Q Consensus       493 -------------~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (1075)
                                   ..|.|..+..+|+|.|+|.|.|..|.......+.+.               ... ..+|.+......
T Consensus       165 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~---------------~~~-~~~P~v~~~~~~  228 (523)
T 2rcj_C          165 KPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTEC---------------SAS-TKGPSVFPLAPS  228 (523)
T ss_pred             cccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeec---------------CCC-CcCCEEEecCCC
Confidence                         258899999999999999999998876555443221               011 123333333334


Q ss_pred             eEeecCCeEEEEEEEecC-CCCceEEEEeCCeEEecCCcEEEE-EcCC--ceEEEEEeeeeecCCceEEEEEECCCCcee
Q psy16863        560 VKAKIGTSAILECQVLVP-PWPRSIYWYNKEGVVEASDKYHIM-ADGL--GGYSIEINYLEAVDDGEWKCVATSSSGVKQ  635 (1075)
Q Consensus       560 ~~v~~G~~~~L~C~~~~~-p~p~~v~W~~~~~~i~~~~~~~~~-~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  635 (1075)
                      ..+.+|+.++|.|.+.+. |.|..|+|++++..+.......+. .++.  ....|.|.++..+| |.|+|.|.|..|...
T Consensus       229 ~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~  307 (523)
T 2rcj_C          229 SKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  307 (523)
T ss_pred             cccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcc
Confidence            456889999999999987 666689999999875321111111 1111  12379999999999 999999999999854


Q ss_pred             eeeEEEEEeCCCCcCCCce-eeccc-e-eeecCCeEEEEEEEecCCC----CeEEEEECCEEcCCCC----------eEE
Q psy16863        636 FSAAYVHVLMPKNYRKPRF-VESLK-A-VMTDDGLVSFECKVVGFPT----PTLQWFKDNEELKPGD----------VYQ  698 (1075)
Q Consensus       636 ~~~~~l~v~~p~~~~~p~~-~~~~~-~-~~~~g~~~~l~C~v~g~p~----p~v~W~k~g~~l~~~~----------~~~  698 (1075)
                      .. ..+.+..+     |.+ +.... . .+.+|+.+.|.|.+.|.|+    +.|+|+|+|..+..+.          .|.
T Consensus       308 ~~-~~l~v~~~-----P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~  381 (523)
T 2rcj_C          308 VD-KRVEPLSL-----PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYR  381 (523)
T ss_pred             eE-EecCCCcC-----ceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEE
Confidence            32 23333222     222 22211 1 2567999999999998653    4899999999886442          121


Q ss_pred             ------Ee--ecCCCceEEEEEEecCceEEEEEEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEE
Q psy16863        699 ------LT--GTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTV  770 (1075)
Q Consensus       699 ------~~--~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C  770 (1075)
                            +.  ..+|+|.|+|.|.|..|.......+.+..              ....+|.+...........|..+.|.|
T Consensus       382 ~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~--------------~~~~~P~v~~~~~~~~~~~~~~~~l~C  447 (523)
T 2rcj_C          382 VVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAK--------------GQPREPQVYTLPPSREEMTKNQVSLTC  447 (523)
T ss_pred             EEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEEccc--------------CCCCCCEEEEeCCChHHccCCceEEEE
Confidence                  11  12689999999999888765555454310              011466655433322223344599999


Q ss_pred             EEecCCCC--eEEEEECCEEeecCCcEEEEEeeCcE----EEEEEccccCCCCeEEEEEEEeCCc
Q psy16863        771 QVSISPEP--KVSWFRDDQQVVESDNVKILKETLGV----CHLKIHALEVADQAEWKCIATNDFG  829 (1075)
Q Consensus       771 ~v~g~p~p--~v~W~k~g~~i~~~~~~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~A~N~~G  829 (1075)
                      .+.|.|+|  .|+|+|||+++.......+....++.    ..|.|.....+|+|.|+|.|.|...
T Consensus       448 ~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~~~l~v~~~~~~~~g~Y~C~a~n~~l  512 (523)
T 2rcj_C          448 LVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  512 (523)
T ss_pred             EEEeeECCCCEEEEEECCEECCCeeeccceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEcCCc
Confidence            99998766  99999999998754433333333332    3466777777899999999999854

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=2.5e-44  Score=418.69  Aligned_cols=414  Identities=13%  Similarity=0.150  Sum_probs=291.7

Q ss_pred             eecCceeeccCCeEEEEEEEecCCCcEE-----EEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCC
Q psy16863        354 RRLHDIAVKVGTRARLLVEIRSPTEIKI-----HWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAV  428 (1075)
Q Consensus       354 ~~~~~~~v~~G~~v~l~C~~~g~p~~~v-----~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~  428 (1075)
                      ..+.+..+.+|++++|.|.+.| |.+.+     .|+|++..+..         .....|.|.+++. |+| |+|.|.|..
T Consensus         4 ~~P~~~~v~~G~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~~~~---------~~~~~l~i~~v~~-d~g-Y~C~a~~~~   71 (450)
T 1z7z_I            4 VSPSKVILPRGGSVLVTCSTSC-DQPMLLGIETPLPKKELLLPG---------NNRKVYELSNVQE-DSQ-PMCYSNCPD   71 (450)
T ss_dssp             EESSEEEEETTEEEEEEEECCS-SCCCEEEECSSSCEEECCSST---------TTEEEEEEEEECS-CBC-CEEEEEETT
T ss_pred             cCCCceEEecCCcEEEEEEccC-CCcccccccceeeecceEecC---------CCceEEEEEeccc-CCe-eEEEEeCCC
Confidence            3557788999999999999988 88888     99999876543         2233688999987 999 999998877


Q ss_pred             CceeeEEEEEeecCCCCCCCeeeeecc-eEEecCCeEEEEEEEECCCCC---eEEEEeCCEeccCC------CEEEEEeC
Q psy16863        429 GRSHCSCELSVLVPKAYKAPFFTKELE-AILTEQGTVSLECKVMGIPTP---QLIWYKDNKKIKAG------DIFALTAN  498 (1075)
Q Consensus       429 g~~~~s~~l~V~~~~~~~~p~~~~~~~-~~~~~g~~v~l~C~~~g~p~~---~v~W~~~g~~l~~~------~~~~l~i~  498 (1075)
                      +..+.++.|.|..+|.    .+...+. ..+.+|+.+.|.|.+.|.|++   .|+|+|+|+++...      ....|.|.
T Consensus        72 ~~~~~~~~l~V~~~P~----~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~~~~~~~L~i~  147 (450)
T 1z7z_I           72 GQSTAKTFLTVYWTPE----RVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVL  147 (450)
T ss_dssp             EEEEEECEEEEEBCCS----EEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEE
T ss_pred             CcceeEEEEEEEeCCC----cceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccccccceEEEEE
Confidence            7777778888887543    3323333 458899999999999998888   99999999988643      24589999


Q ss_pred             CCCCCCcEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEecC-
Q psy16863        499 PKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVP-  577 (1075)
Q Consensus       499 ~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~-  577 (1075)
                      .+..+|+|.|+|.|.|..|.......+.+.....        ......+..+|.+..   ...+.+|+.++|.|.+.+. 
T Consensus       148 ~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~--------l~v~~~~~~~p~~~~---~~~v~~G~~v~l~C~~~g~~  216 (450)
T 1z7z_I          148 VRRDHHGANFSCRTELDLRPQGLELFENTSAPYQ--------LQTFVLPATPPQLVS---PRVLEVDTQGTVVCSLDGLF  216 (450)
T ss_dssp             CCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEE--------CEECCCCSSCCEEEC---CSEEETTSEEEEEEEEESCT
T ss_pred             eeccccCceEEEEEEcccCCCCceEEeeccCccc--------eeeeccCCCCCEecC---ceeEEeCCcEEEEEEeeCCC
Confidence            9999999999999999977533211111110000        000000112233322   2678899999999999998 


Q ss_pred             C--CCceEEEEeCCeEEecCCcEEEEEcCCceEEEE-EeeeeecCCc--eEEEEEECCCCceeeeeEEEEEeCCCCcCCC
Q psy16863        578 P--WPRSIYWYNKEGVVEASDKYHIMADGLGGYSIE-INYLEAVDDG--EWKCVATSSSGVKQFSAAYVHVLMPKNYRKP  652 (1075)
Q Consensus       578 p--~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~-i~~~~~~d~G--~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p  652 (1075)
                      |  .+ .+.|++++..+..  ++..  .+. ...+. ..++..+|+|  .|+|.|.|..|.... ...+.|..++.   |
T Consensus       217 P~~~~-~~~W~~~~~~~~~--~~~~--~~~-~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~-~~~l~V~~~~~---p  286 (450)
T 1z7z_I          217 PVSEA-QVHLALGDQRLNP--TVTY--GND-SFSAKASVSVTAEDEGTQRLTCAVILGNQSQET-LQTVTIYSFPA---P  286 (450)
T ss_dssp             TGGGC-EEEEEETTEECCC--EEEE--ETT-EEEEEEEEECCGGGCEEEEEEEEEEETTEEEEE-EEEEEEECCCC---C
T ss_pred             CCCce-EEEEeCCCEeCCc--eEEe--cCC-ceeEEEEEEeEhhhCCcEEEEEEEccCCccEEE-EEEEEEecCCC---C
Confidence            5  44 8999999988754  2322  221 12221 2277999999  999999999887653 45677766432   5


Q ss_pred             ceeeccceeeecCCeEEEEEEEecCCCCeEEEEECCEEc-CCCC--eEEEe--ecCCCceEEEEEEecCc----eEEEEE
Q psy16863        653 RFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEEL-KPGD--VYQLT--GTSSLGSYCCVAKNVMG----KAESST  723 (1075)
Q Consensus       653 ~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~l-~~~~--~~~~~--~~~d~G~Y~C~a~N~~g----~~~~~~  723 (1075)
                      .+... ...+.+|+.++|.|.+.  |.|.++|  +|..+ ..+.  .+.+.  ..+|+|.|+|.|.|..|    ....++
T Consensus       287 ~i~~~-~~~v~~G~~v~l~C~~~--p~p~i~W--~g~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~  361 (450)
T 1z7z_I          287 NVILT-KPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTR  361 (450)
T ss_dssp             EEEES-CSEEETTCEEEEEEEC--------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred             eEecC-CeeEeCCCcEEEEEecC--CCCEeEE--CCEEcCCCCceEEEEEecCcccCCceEEEEEEcCCCCcccccceeE
Confidence            55433 33678899999999997  8889999  77777 2332  34443  34799999999998666    334667


Q ss_pred             EEEEEeccccCchhhhhhhccCCCCCeEEecc--ceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEee
Q psy16863        724 QLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL--KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKET  801 (1075)
Q Consensus       724 ~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~  801 (1075)
                      .|.|..                  +|.+....  .+..+.+|+.+.|.|.+.|.|.|.|+|+|+|..+..+..       
T Consensus       362 ~l~V~~------------------~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~g~-------  416 (450)
T 1z7z_I          362 ELRVLY------------------GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE-------  416 (450)
T ss_dssp             ECEEEE------------------EEECCSTTSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTS-------
T ss_pred             EEEEec------------------CCceeeccCCCceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCCCC-------
Confidence            788763                  55555543  567889999999999999999999999999985543321       


Q ss_pred             CcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEe
Q psy16863        802 LGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV  841 (1075)
Q Consensus       802 ~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~  841 (1075)
                          .|   +++.+|+|.|+|.|.|.+|.+..++.|.|+.
T Consensus       417 ----~~---~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  449 (450)
T 1z7z_I          417 ----SV---TVTRDLEGTYLCRARSTQGEVTREVTVNVLS  449 (450)
T ss_dssp             ----CE---ECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             ----eE---eEehhhCeEEEEEEEeCCCceeEEEEEEEEc
Confidence                12   5788999999999999999999999999875

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=100.00  E-value=3.2e-43  Score=417.59  Aligned_cols=454  Identities=14%  Similarity=0.134  Sum_probs=307.6

Q ss_pred             eecceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCCC--cee------------ccCcEEEEecCCeEEEEE
Q psy16863        140 RRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD--HPI------------FGNRFRAINRDGRTELNI  205 (1075)
Q Consensus       140 ~~~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~~--~~~------------~~~~~~~~~~~~~~~L~I  205 (1075)
                      ..+.++.+.+|++++|.|.+.+          .+.+.+.|++++.  .+.            ...|+.....++...|.|
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~----------~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I   74 (523)
T 2rcj_C            5 TQPPSASGTPGQRVTISCTGTS----------SGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAI   74 (523)
T ss_pred             ccCCceEEecCCcEEEEEEEec----------cCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEE
Confidence            3345678999999999888754          3456788888641  111            135666555566779999


Q ss_pred             ceeccCCCeEEEEEEEcCceeE---EEEEEEeeeccCCCCCccccccccceeeccceeEEEEEecCCCceEEEEecCCCe
Q psy16863        206 RRVRRDDGGRYSVTASNESGYS---TAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTI  282 (1075)
Q Consensus       206 ~~~~~~D~G~Y~C~a~n~~g~~---~~~~~l~V~~~~~~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~  282 (1075)
                      .+++.+|+|.|+|.|.|..|..   ...+.|.|......+|.+...+....+.+|+.++|.|.+.+.+        .+++
T Consensus        75 ~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~--------p~~~  146 (523)
T 2rcj_C           75 SGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFY--------PGAV  146 (523)
T ss_pred             CCCChhhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEecccc--------CCce
Confidence            9999999999999999987632   3456777754333556666666666777899999988776421        0124


Q ss_pred             eeEEecCCCccccCCCeEE--EeeCCe----EEEEEcccCCCCCEEEEEEEEeCCeeEEEEEEEEEecCCCCCCeeeeec
Q psy16863        283 PFSFRAQGDHPIFGNRFRA--INRDGR----TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRL  356 (1075)
Q Consensus       283 ~~~w~~~~~~~~~~~~~~~--~~~~~~----~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~  356 (1075)
                      .+.|++++..+..+.++..  ...++.    ..|.|.+++.+|+|.|+|.|.|..|.....+.+.+......+|.+....
T Consensus       147 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~  226 (523)
T 2rcj_C          147 TVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLA  226 (523)
T ss_pred             EEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEecC
Confidence            7888886654433322211  111221    3699999999999999999999988765555554333334566666444


Q ss_pred             CceeeccCCeEEEEEEEecC-CCc-EEEEEECCEecCCCCcEEEE-EcCC---EEEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863        357 HDIAVKVGTRARLLVEIRSP-TEI-KIHWYRNDRKLEENKIYRTQ-HDGN---FYFIDLSSVSLFDSGRWTCLAENAVGR  430 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~-p~~-~v~W~k~g~~l~~~~~~~~~-~~g~---~~~L~I~~v~~~d~G~Y~C~a~n~~g~  430 (1075)
                      ....+.+|+.+.|.|.+.|. |.+ .|+|+|+|..+.......+. .+|.   ...|.|.++..+| |.|+|.|.|..|.
T Consensus       227 ~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~  305 (523)
T 2rcj_C          227 PSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  305 (523)
T ss_pred             CCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCC
Confidence            45567899999999999886 766 89999999876432111111 2222   2479999999999 9999999999998


Q ss_pred             eeeEEEEEeecCCCCCCCeeeeecc-e-EEecCCeEEEEEEEECCCC----CeEEEEeCCEeccCCC----------E--
Q psy16863        431 SHCSCELSVLVPKAYKAPFFTKELE-A-ILTEQGTVSLECKVMGIPT----PQLIWYKDNKKIKAGD----------I--  492 (1075)
Q Consensus       431 ~~~s~~l~V~~~~~~~~p~~~~~~~-~-~~~~g~~v~l~C~~~g~p~----~~v~W~~~g~~l~~~~----------~--  492 (1075)
                      ......|.|...|.    .+...+. . .+.+|+.+.|.|.+.|.|+    +.|+|+|||.++....          .  
T Consensus       306 ~~~~~~l~v~~~P~----~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~  381 (523)
T 2rcj_C          306 TKVDKRVEPLSLPS----VFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYR  381 (523)
T ss_pred             cceEEecCCCcCce----EEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEE
Confidence            77666666543321    2222222 2 2678999999999998654    4999999999985432          1  


Q ss_pred             --EEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeee-eeccceEeecCCeEE
Q psy16863        493 --FALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFI-KEVENVKAKIGTSAI  569 (1075)
Q Consensus       493 --~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~G~~~~  569 (1075)
                        ..|.|..+..+|+|.|+|.|.|..|.......+.+..               .. ..+|.+. ..+....+..| .++
T Consensus       382 ~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~---------------~~-~~~P~v~~~~~~~~~~~~~-~~~  444 (523)
T 2rcj_C          382 VVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAK---------------GQ-PREPQVYTLPPSREEMTKN-QVS  444 (523)
T ss_pred             EEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEEccc---------------CC-CCCCEEEEeCCChHHccCC-ceE
Confidence              2477888888999999999999887765554444310               01 1233333 33333334444 499


Q ss_pred             EEEEEecCCCC-ceEEEEeCCeEEecCCcEEEEEcCCceE----EEEEeeeeecCCceEEEEEECCCCc
Q psy16863        570 LECQVLVPPWP-RSIYWYNKEGVVEASDKYHIMADGLGGY----SIEINYLEAVDDGEWKCVATSSSGV  633 (1075)
Q Consensus       570 L~C~~~~~p~p-~~v~W~~~~~~i~~~~~~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~g~  633 (1075)
                      |.|.+.+.|+| ..+.|+++|..+..........++.+.+    .|.|......|+|.|+|.|.|....
T Consensus       445 l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~~~l~v~~~~~~~~g~Y~C~a~n~~l~  513 (523)
T 2rcj_C          445 LTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  513 (523)
T ss_pred             EEEEEEeeECCCCEEEEEECCEECCCeeeccceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEcCCcC
Confidence            99999986544 4899999998886443333322332322    3555555567899999999998644

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=8.6e-44  Score=405.72  Aligned_cols=393  Identities=12%  Similarity=0.133  Sum_probs=240.3

Q ss_pred             CCCcEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEecCCCCc
Q psy16863        502 PSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPR  581 (1075)
Q Consensus       502 ~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~  581 (1075)
                      ..|.|.|+|.+.+..+...+.. +.+.-.  .++.....+.-...+. .+.++..+..+.+.+|+.+.|.|.+.+.|.| 
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~l~c~~~p~-~~~~~~~~~~v~V~~G~~v~L~C~v~g~P~p-   78 (423)
T 3qs7_E            4 NQDLPVIKCVLINHKNNDSSVG-KSSSYP--MVSESPEDLGCALRPQ-SSGTVYEAAAVEVDVSASITLQVLVDAPGNI-   78 (423)
T ss_dssp             --------------------------------------------------------CEEEECSSCCEEEEEECSCCSSC-
T ss_pred             cCCCCeeEEEEEeccCCCcccc-ccccch--hhhCCHHHcCCccCCC-CCcceeccccEEEecCCcEEEEEEEEcCCCC-
Confidence            3578999999998755442221 111100  0000000010011111 1223334458899999999999999998877 


Q ss_pred             eEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEEeCCCCcCCCceeecccee
Q psy16863        582 SIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAV  661 (1075)
Q Consensus       582 ~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~  661 (1075)
                      .|.|++++..+.....+  ..+......|.|.+++.+|+|.|+|.|.|..|.... ...|.|..++.     +.......
T Consensus        79 ~i~W~~~~~~l~~~~~~--~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~-~~~l~V~~~p~-----~~~~~p~~  150 (423)
T 3qs7_E           79 SCLWVFKHSSLNCQPHF--DLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTI-LFTVSIRNTLL-----YTLRRPYF  150 (423)
T ss_dssp             EEEEEETTEEECCCCBC-------CEEEEEESSCCSSSCSEEEEEEEC--CEEEE-EEEEEEC----------CEEEEEE
T ss_pred             eEEEEECCCccCcccee--ccccceEEEEEEeecCcccCEEEEEEEEcCCCcEEE-EEEEEEecCcc-----ccccCCcE
Confidence            89999999887653332  122223457999999999999999999999987653 34566654332     21111123


Q ss_pred             eecCCeEEEEEEEecCCCCeEEEEECCEEcCCC-----CeEE----EeecCCCceEEEEEEecCceEEEE-EEEEEEecc
Q psy16863        662 MTDDGLVSFECKVVGFPTPTLQWFKDNEELKPG-----DVYQ----LTGTSSLGSYCCVAKNVMGKAESS-TQLTIEDIR  731 (1075)
Q Consensus       662 ~~~g~~~~l~C~v~g~p~p~v~W~k~g~~l~~~-----~~~~----~~~~~d~G~Y~C~a~N~~g~~~~~-~~l~V~~~~  731 (1075)
                      ...|+.+.|.|.+.|.|.|.|+|+|++..+...     ..+.    +....|+|.|+|.|.|..|..... +.|.|.   
T Consensus       151 ~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~---  227 (423)
T 3qs7_E          151 RKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLN---  227 (423)
T ss_dssp             EECSSSSCEEEEEEESSCCEEEEEEC-------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESS---
T ss_pred             eccCCceEEEEEEeeecCCeEEEEECCCCCccccccccccccccceEEecccCeEEEEEEEcCCCCcceeeEEEEEe---
Confidence            445777899999999999999999988755321     0011    113478999999999999987653 555554   


Q ss_pred             ccCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEec-CCCCeEEEEECCEEeecCCcEEEEEe-----eCcEE
Q psy16863        732 NHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKE-----TLGVC  805 (1075)
Q Consensus       732 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g-~p~p~v~W~k~g~~i~~~~~~~~~~~-----~~~~~  805 (1075)
                                     .+|.+  .+.+..+.+|+.+.|.|.+.| .|.|.|+|+|+|..+.....+.....     .....
T Consensus       228 ---------------~~p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~  290 (423)
T 3qs7_E          228 ---------------QTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRIL  290 (423)
T ss_dssp             ---------------SCCCS--STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEE
T ss_pred             ---------------cCCcc--CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEE
Confidence                           23333  334677899999999999998 67799999999998866543322111     11134


Q ss_pred             EEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEecCCCCCCeeeee-cceeecCCCeEEEEEEEEccCCCeeEEEECC
Q psy16863        806 HLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEE-LKAVLSEGGAVNLECKVIGVPQPTLKWFKDG  884 (1075)
Q Consensus       806 ~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~-~~~~~~~g~~~~L~C~v~g~p~p~v~W~k~g  884 (1075)
                      .|.|.+++.+|+|.|+|.|.|.   ...++.|.|..++.+..   ... ....+.+|+.+.|.|.+.|.|.|.|+|+|||
T Consensus       291 ~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~p~i~~---~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g  364 (423)
T 3qs7_E          291 FAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINA---TNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSR  364 (423)
T ss_dssp             EEEESSCCTTTCEEEEEEETTE---EEEEEEEEEESSCEEEE---C---CEECCCTTCCCCEEEEEEEESCCEEEEEETT
T ss_pred             EEEEeecCHHHCEEEEEEEecC---CCceEEEEEEeCCcceE---cCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECC
Confidence            7999999999999999999998   66788888886543211   111 1223678999999999999999999999999


Q ss_pred             EEcCCCC-----eeEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEecCChh
Q psy16863        885 RELKAGD-----IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKSQ  933 (1075)
Q Consensus       885 ~~l~~~~-----~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~  933 (1075)
                      .+|..+.     .+.+........|+|.|+|.|+|.+|+++.++.|.|...|..
T Consensus       365 ~~l~~~~~~~~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p~~  418 (423)
T 3qs7_E          365 KSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKH  418 (423)
T ss_dssp             EEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC-------
T ss_pred             EECCCccccccCCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCCcc
Confidence            9997653     445533445667999999999999999999999998766544

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=2.8e-40  Score=374.80  Aligned_cols=350  Identities=21%  Similarity=0.335  Sum_probs=255.7

Q ss_pred             CCeeeeeccceEe---ecCCeEEEEEEEecCCCCceEEEEeCCeEEecCCcEEEE-EcCCceEEEEEeee-eecCCceEE
Q psy16863        550 APIFIKEVENVKA---KIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIM-ADGLGGYSIEINYL-EAVDDGEWK  624 (1075)
Q Consensus       550 ~~~~~~~~~~~~v---~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~-~~~~~~~~L~i~~~-~~~d~G~Y~  624 (1075)
                      +|.|...|.+..+   .+|+.+.|.|.+.|.|.| .|+|+|+|..+..+...++. .++    .|.|.+. ..+|+|.|+
T Consensus         5 ~P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~g----~l~i~~~~~~~D~G~Y~   79 (384)
T 3kld_A            5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKP-HIRWKLNGTDVDIGMDFRYSVVDG----SLLINNPNKTQDAGTYQ   79 (384)
T ss_dssp             EEEEEECCCCEEEETTCSCSEEEECCEEEEESCC-EEEEEETTEECCC----CEEEETT----EEEEESCCHHHHCEEEE
T ss_pred             CCEEEeCCcceEeecCCCCCeEEEEeEecCCCCC-EEEEEECCEECcCCCCccEEEECC----EEEEcCCCCcccCEEEE
Confidence            4666666666665   578999999999999988 89999999998654433332 333    5666665 889999999


Q ss_pred             EEEECCCCceeeeeEEEEEeCCCCcCCCceeeccceeeecCCeEEEEEEEe-cCCCCeEEEEECCEEcCCCCe-------
Q psy16863        625 CVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVV-GFPTPTLQWFKDNEELKPGDV-------  696 (1075)
Q Consensus       625 C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~l~C~v~-g~p~p~v~W~k~g~~l~~~~~-------  696 (1075)
                      |.|.|..|........+.+...+.+...   ......+.+|+.+.|.|... +.|.+.++|++++.++....+       
T Consensus        80 C~A~N~~G~~~s~~~~l~v~~~~~~~~~---~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~  156 (384)
T 3kld_A           80 CIATNSFGTIVSREAKLQFAYLENFKTR---TRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQET  156 (384)
T ss_dssp             EEEEETTEEEECCCEEEEEEEECCCSCC---CCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECTTT
T ss_pred             EEEEcCcccEEecceEEEEecccccccC---CCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEcCC
Confidence            9999999986554556666544322111   01122466789999999764 456789999999988754332       


Q ss_pred             --EEEe--ecCCCceEEEEEEecCceEEEE---EEEEEEeccccCchhhhhhhccCCCCCeEE-eccceeeeecCCeEEE
Q psy16863        697 --YQLT--GTSSLGSYCCVAKNVMGKAESS---TQLTIEDIRNHLSEEDKLLLLTNNKAPKFI-EGLKSCQATVNEEFKF  768 (1075)
Q Consensus       697 --~~~~--~~~d~G~Y~C~a~N~~g~~~~~---~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l  768 (1075)
                        +.+.  ..+|+|.|+|.|.|..|.....   ..+.+.....           ....+|.+. ..+....+..|+++.|
T Consensus       157 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~-----------~~~~~p~~~~~~~~~~~~~~G~~v~l  225 (384)
T 3kld_A          157 GNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGV-----------MGEYEPKIEVQFPETVPAEKGTTVKL  225 (384)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEE-----------CCCEEEEEEEECCSEEEEETTSCEEE
T ss_pred             CcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCc-----------ccccCCceeecCCCceEecCCCcEEE
Confidence              3333  3479999999999998865432   2233321000           001233333 3345677889999999


Q ss_pred             EEEEecCCCCeEEEEEC-CEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEecCCCCC
Q psy16863        769 TVQVSISPEPKVSWFRD-DQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKK  847 (1075)
Q Consensus       769 ~C~v~g~p~p~v~W~k~-g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~  847 (1075)
                      .|.+.|.|.|.+.|+|+ +.++....+.  . .  ....|.|.+++.+|+|.|+|.|.|..|....++.|.|..+|    
T Consensus       226 ~C~~~g~P~p~i~W~k~~~~~~~~~~~~--~-~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P----  296 (384)
T 3kld_A          226 ECFALGNPVPTILWRRADGKPIARKARR--H-K--SNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQP----  296 (384)
T ss_dssp             EEEEEEESCCEEEEEETTCCCCCTTCEE--C-T--TSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEE----
T ss_pred             EEEEeecCCCcEEEEeCCCcccccccee--c-C--CCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCC----
Confidence            99999999999999995 5555433211  1 1  12379999999999999999999999999999999998754    


Q ss_pred             Ceeeeecce-eecCCCeEEEEEEEEccCCCeeEEEECCEEcCCCCee-----EEEECCCCceeeEEEEEEEEeCCeeEEE
Q psy16863        848 PKFLEELKA-VLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIH-----KIISGEDGTCCLGIYTCEAHNCMGTTSS  921 (1075)
Q Consensus       848 p~~~~~~~~-~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~~-----~i~~~~~~~~d~G~Y~C~a~N~~G~~~~  921 (1075)
                       .+...+.. .+.+|+.+.|.|.+.|.|.|.|+|+|||.+|..+.+.     .|.+......|+|.|+|.|.|.+|.+.+
T Consensus       297 -~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~  375 (384)
T 3kld_A          297 -NWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFS  375 (384)
T ss_dssp             -EEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             -ccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEeCCEEEEeecChhhCEEEEEEEEeCCceEEe
Confidence             44444433 3778999999999999999999999999999765543     3556667778999999999999999999


Q ss_pred             EEEEEEe
Q psy16863        922 SAALLGF  928 (1075)
Q Consensus       922 ~~~l~v~  928 (1075)
                      ++.|.|+
T Consensus       376 ~a~L~V~  382 (384)
T 3kld_A          376 SAELSVI  382 (384)
T ss_dssp             EEEEEEC
T ss_pred             ceEEEEe
Confidence            9999885

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=7.2e-41  Score=381.60  Aligned_cols=377  Identities=12%  Similarity=0.146  Sum_probs=234.8

Q ss_pred             CCCCEEEEEEEEeCCeeEEEEEEEEEec-------------CCCCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEE
Q psy16863        317 RDDGGRYSVTASNESGYSTAKFELSVES-------------QVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHW  383 (1075)
Q Consensus       317 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-------------~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W  383 (1075)
                      ..|.|.|+|...+..+..++. .+++.+             ..+..+.++..+.++.|.+|+++.|.|.+.+.|.+.|.|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~c~~~p~~~~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W   82 (423)
T 3qs7_E            4 NQDLPVIKCVLINHKNNDSSV-GKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLW   82 (423)
T ss_dssp             -----------------------------------------------------CEEEECSSCCEEEEEECSCCSSCEEEE
T ss_pred             cCCCCeeEEEEEeccCCCccc-cccccchhhhCCHHHcCCccCCCCCcceeccccEEEecCCcEEEEEEEEcCCCCeEEE
Confidence            368899999998854432111 111111             011223344445588999999999999999999999999


Q ss_pred             EECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeecCCCCCCCeeeeecceEEecCCe
Q psy16863        384 YRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGT  463 (1075)
Q Consensus       384 ~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~  463 (1075)
                      +|++..+.....+.. .......|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+|.     +.......+..|+.
T Consensus        83 ~~~~~~l~~~~~~~~-~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~-----~~~~~p~~~~~~~~  156 (423)
T 3qs7_E           83 VFKHSSLNCQPHFDL-QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLL-----YTLRRPYFRKMENQ  156 (423)
T ss_dssp             EETTEEECCCCBC------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC----------CEEEEEEEECSSS
T ss_pred             EECCCccCccceecc-ccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEecCcc-----ccccCCcEeccCCc
Confidence            999988765433211 122345699999999999999999999999888888888875442     22111223556888


Q ss_pred             EEEEEEEECCCCCeEEEEeCCEeccCCCE---E-EEEeC-CCCCCCcEEEEEEEEecceeeEEE-EEEEEeccccccCCC
Q psy16863        464 VSLECKVMGIPTPQLIWYKDNKKIKAGDI---F-ALTAN-PKDPSSLGTYTCEAVNCMGAAFST-SRVIARGQQSFLDND  537 (1075)
Q Consensus       464 v~l~C~~~g~p~~~v~W~~~g~~l~~~~~---~-~l~i~-~~~~~d~G~Y~C~a~n~~g~~~~~-~~v~v~~~~~~~~~~  537 (1075)
                      +.|.|.+.|.|.|.|+|+|++..+.....   . ..... .....|+|.|+|.|.|..|..... +.|.|..        
T Consensus       157 ~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~--------  228 (423)
T 3qs7_E          157 DALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQ--------  228 (423)
T ss_dssp             SCEEEEEEESSCCEEEEEEC-------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSS--------
T ss_pred             eEEEEEEeeecCCeEEEEECCCCCccccccccccccccceEEecccCeEEEEEEEcCCCCcceeeEEEEEec--------
Confidence            89999999999999999999886532110   0 11111 115688999999999999987552 4444431        


Q ss_pred             CCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEec-CCCCceEEEEeCCeEEecCCcEEEE-EcC----CceEEEE
Q psy16863        538 DVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLV-PPWPRSIYWYNKEGVVEASDKYHIM-ADG----LGGYSIE  611 (1075)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~-~p~p~~v~W~~~~~~i~~~~~~~~~-~~~----~~~~~L~  611 (1075)
                                  +|.+  .+.+..+.+|+.+.|.|.+.+ .|.| .|.|++++..+.....+... ..+    .....|.
T Consensus       229 ------------~p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p-~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~  293 (423)
T 3qs7_E          229 ------------TPQT--TLPQLFLKVGEPLWIRCKAVHVNHGF-GLTWELENKALEEGNYFEMSTYSTNRTMIRILFAF  293 (423)
T ss_dssp             ------------CCCS--STTEEEEETTSCEEEEEEEEESSSCC-CEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEE
T ss_pred             ------------CCcc--CCCceEEeCCCeEEEEEEEEcCCCCc-EEEEEECCEEccccceeecccccCCceeEEEEEEE
Confidence                        1111  233677899999999999998 5545 89999999887654322111 101    1123799


Q ss_pred             EeeeeecCCceEEEEEECCCCceeeeeEEEEEeCCCCcCCCceeec-cceeeecCCeEEEEEEEecCCCCeEEEEECCEE
Q psy16863        612 INYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVES-LKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEE  690 (1075)
Q Consensus       612 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~-~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~  690 (1075)
                      |.+++.+|+|.|+|.|.|.    ......|.|..++.+..   ... ....+.+|+.+.|.|.+.|.|.|.++|+|+|..
T Consensus       294 I~~v~~~D~G~Y~C~A~N~----~~~~~~L~V~~~p~i~~---~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~  366 (423)
T 3qs7_E          294 VSSVARNDTGYYTCSSSKH----PSQSALVTIVEKGFINA---TNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKS  366 (423)
T ss_dssp             ESSCCTTTCEEEEEEETTE----EEEEEEEEEESSCEEEE---C---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEE
T ss_pred             EeecCHHHCEEEEEEEecC----CCceEEEEEEeCCcceE---cCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEE
Confidence            9999999999999999998    23445677766532211   011 112356789999999999999999999999999


Q ss_pred             cCCCC-----eEEE----eecCCCceEEEEEEecCceEEEEEEEEEEec
Q psy16863        691 LKPGD-----VYQL----TGTSSLGSYCCVAKNVMGKAESSTQLTIEDI  730 (1075)
Q Consensus       691 l~~~~-----~~~~----~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~  730 (1075)
                      |..+.     .+.+    ...+|+|.|+|.|.|..|.+..++.|.|.+.
T Consensus       367 l~~~~~~~~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~  415 (423)
T 3qs7_E          367 FPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG  415 (423)
T ss_dssp             EECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC----
T ss_pred             CCCccccccCCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecC
Confidence            96543     3333    2347999999999999999999999999864

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=1.1e-40  Score=378.01  Aligned_cols=348  Identities=22%  Similarity=0.406  Sum_probs=255.6

Q ss_pred             CeeeeecceEE----ecCCeEEEEEEEECCCCCeEEEEeCCEeccCCCEE-------EEEeCC-CCCCCcEEEEEEEEec
Q psy16863        448 PFFTKELEAIL----TEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIF-------ALTANP-KDPSSLGTYTCEAVNC  515 (1075)
Q Consensus       448 p~~~~~~~~~~----~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~~~-------~l~i~~-~~~~d~G~Y~C~a~n~  515 (1075)
                      |.|..++...+    .+|+.+.|.|.+.|.|.|.|+|+|||.++..+...       .|.|.. ...+|+|.|+|.|.|.
T Consensus         6 P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~g~l~i~~~~~~~D~G~Y~C~A~N~   85 (384)
T 3kld_A            6 PVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNS   85 (384)
T ss_dssp             EEEEECCCCEEEETTCSCSEEEECCEEEEESCCEEEEEETTEECCC----CEEEETTEEEEESCCHHHHCEEEEEEEEET
T ss_pred             CEEEeCCcceEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECcCCCCccEEEECCEEEEcCCCCcccCEEEEEEEEcC
Confidence            44554444432    47899999999999999999999999998654221       244433 3678999999999999


Q ss_pred             ceeeEE-EEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEec
Q psy16863        516 MGAAFS-TSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEA  594 (1075)
Q Consensus       516 ~g~~~~-~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~  594 (1075)
                      .|...+ .+.+.+...                   ++..........+.+|+.+.|.|.......+..+.|++++..+..
T Consensus        86 ~G~~~s~~~~l~v~~~-------------------~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~  146 (384)
T 3kld_A           86 FGTIVSREAKLQFAYL-------------------ENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQ  146 (384)
T ss_dssp             TEEEECCCEEEEEEEE-------------------CCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCC
T ss_pred             cccEEecceEEEEecc-------------------cccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEe
Confidence            997543 345555311                   111112234567889999999997643222348999999988765


Q ss_pred             CCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceeeee--EEEEEeCC--CCcCCCceeec-c-ceeeecCCeE
Q psy16863        595 SDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSA--AYVHVLMP--KNYRKPRFVES-L-KAVMTDDGLV  668 (1075)
Q Consensus       595 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~--~~l~v~~p--~~~~~p~~~~~-~-~~~~~~g~~~  668 (1075)
                      ..+..+....   ..|.|.+++.+|+|.|+|.|.|..|......  ..+.+...  .....|.+... . ...+.+|+.+
T Consensus       147 ~~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v  223 (384)
T 3kld_A          147 DNRRFVSQET---GNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTV  223 (384)
T ss_dssp             SSSEEECTTT---CCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCE
T ss_pred             eccEEEEcCC---CcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcE
Confidence            4443332221   2699999999999999999999987653211  11222100  00011222211 1 2235678999


Q ss_pred             EEEEEEecCCCCeEEEEEC-CEEcCC-------CCeEEEe--ecCCCceEEEEEEecCceEEEEEEEEEEeccccCchhh
Q psy16863        669 SFECKVVGFPTPTLQWFKD-NEELKP-------GDVYQLT--GTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEED  738 (1075)
Q Consensus       669 ~l~C~v~g~p~p~v~W~k~-g~~l~~-------~~~~~~~--~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~~~~~  738 (1075)
                      .|.|.+.|.|.|.+.|+|+ +..+..       +..+.+.  ..+|+|.|+|.|.|..|....++.|.|..         
T Consensus       224 ~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~---------  294 (384)
T 3kld_A          224 KLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA---------  294 (384)
T ss_dssp             EEEEEEEEESCCEEEEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE---------
T ss_pred             EEEEEEeecCCCcEEEEeCCCccccccceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEec---------
Confidence            9999999999999999995 444432       2234444  34799999999999999999999999974         


Q ss_pred             hhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCe
Q psy16863        739 KLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQA  818 (1075)
Q Consensus       739 ~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G  818 (1075)
                               +|.|...+.+..+..|+.+.|.|.+.|.|.|.|+|+|||.++..+.++.+.   .+  .|.|.+++.+|+|
T Consensus       295 ---------~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~---~~--~L~i~~v~~~D~G  360 (384)
T 3kld_A          295 ---------QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE---QG--TLNITIVNLSDAG  360 (384)
T ss_dssp             ---------EEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEE---TT--EEEESSCCGGGCE
T ss_pred             ---------CCccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEe---CC--EEEEeecChhhCE
Confidence                     788888888889999999999999999999999999999999888887653   23  7999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEE
Q psy16863        819 EWKCIATNDFGQSITSCFLKLN  840 (1075)
Q Consensus       819 ~Y~C~A~N~~G~~~~s~~l~V~  840 (1075)
                      .|+|.|.|.+|.+.+++.|.|.
T Consensus       361 ~Y~C~A~N~~G~~~~~a~L~V~  382 (384)
T 3kld_A          361 MYQCVAENKHGVIFSSAELSVI  382 (384)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEEeCCceEEeceEEEEe
Confidence            9999999999999999999885

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=6.7e-39  Score=367.40  Aligned_cols=353  Identities=23%  Similarity=0.370  Sum_probs=268.7

Q ss_pred             CCCCeeeeeccceEeecCCeEEEEEEEecC-CCCceEEEEeCCeEEecC--CcEEEEEcCCceEEEEEeee-----eecC
Q psy16863        548 GPAPIFIKEVENVKAKIGTSAILECQVLVP-PWPRSIYWYNKEGVVEAS--DKYHIMADGLGGYSIEINYL-----EAVD  619 (1075)
Q Consensus       548 ~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~-p~p~~v~W~~~~~~i~~~--~~~~~~~~~~~~~~L~i~~~-----~~~d  619 (1075)
                      .....+...|.+..+.+|+.++|.|.+.+. |.+ .+.|+|++..+...  .+.....++    .|.|.++     +.+|
T Consensus        19 ~~~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~-~v~W~k~g~~~~~~~~~~~~~~~~~----~l~i~~~~~~~~~~~D   93 (403)
T 3laf_A           19 RRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVP-VIKWKKDGLILALGMDDRKQQLPNG----SLLIQNILHSRHHKPD   93 (403)
T ss_dssp             CCSSEEEECCCCEEECTTCCEEECCEEECTTCCC-EEEEEETTEECCTTSCTTEEECTTS----CEEECSCCCBTTBCSS
T ss_pred             ceeEEEEeCCCceEEecCCcEEEEEEcCCCCCCc-eEEEEECCEECccCCcccEEEecCC----cEEEeeeeccCCCCCc
Confidence            346677888999999999999999999874 544 89999999988643  344443333    5677776     7789


Q ss_pred             CceEEEEEECCCC-ceeeeeEEEEEeCCCCcCCCceeecc-ceeeecCCeEEEEEEEecCCCCeEEEEECCEEcCC---C
Q psy16863        620 DGEWKCVATSSSG-VKQFSAAYVHVLMPKNYRKPRFVESL-KAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKP---G  694 (1075)
Q Consensus       620 ~G~Y~C~a~n~~g-~~~~~~~~l~v~~p~~~~~p~~~~~~-~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~l~~---~  694 (1075)
                      +|.|+|.|.|..+ ........+.|..|     |.+.... ...+.+|+.+.|.|.+.|.|.+.++|+|++..+..   .
T Consensus        94 ~G~Y~C~~~~~~~~~~~s~~~~l~v~~p-----~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~  168 (403)
T 3laf_A           94 EGLYQCEASLGDSGSIISRTAKVMVAGP-----LRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGD  168 (403)
T ss_dssp             CEEEEEEEECGGGCEEECCCEEEEECCC-----CEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTC
T ss_pred             ceEEEEEEEeCCCccEEEEEEEEEecCC-----CccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCc
Confidence            9999999997643 33233445555554     3333322 23467899999999999999999999999987742   1


Q ss_pred             --------CeEEEe--ecCCCceEEEEEEecCceEE-EEEEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecC
Q psy16863        695 --------DVYQLT--GTSSLGSYCCVAKNVMGKAE-SSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVN  763 (1075)
Q Consensus       695 --------~~~~~~--~~~d~G~Y~C~a~N~~g~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g  763 (1075)
                              ..+.+.  ..+|+|.|+|.|.|..|... ..+.+.|...+..            ..++.+...+....+..|
T Consensus       169 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~------------~~~~~~~~~~~~~~~~~g  236 (403)
T 3laf_A          169 SRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGL------------HRQLYFLQRPSNVIAIEG  236 (403)
T ss_dssp             CSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCC------------CEEEEEEECCCCEEEETT
T ss_pred             eEEEEcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCc------------ccCceEecCCCceEecCC
Confidence                    233333  34689999999999888644 3566777642110            012345566677788999


Q ss_pred             CeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEecC
Q psy16863        764 EEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPK  843 (1075)
Q Consensus       764 ~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~  843 (1075)
                      +.+.|.|.+.|.|.|.++|+|+|..+.......... ..  ..|.|.+++.+|+|.|+|.|.|..|....++.|.|..+|
T Consensus       237 ~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~-~~--~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  313 (403)
T 3laf_A          237 KDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLL-GG--SNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPP  313 (403)
T ss_dssp             SCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEE-TT--TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEE
T ss_pred             CcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEEC-Cc--cEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCC
Confidence            999999999999999999999999987554333222 22  379999999999999999999999999999999998764


Q ss_pred             CCCCCeeeeecce-eecCCCeEEEEEEEEccCCCeeEEEECCEEcCCCCee------EEEECCCCceeeEEEEEEEEeCC
Q psy16863        844 HYKKPKFLEELKA-VLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIH------KIISGEDGTCCLGIYTCEAHNCM  916 (1075)
Q Consensus       844 ~~~~p~~~~~~~~-~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~~------~i~~~~~~~~d~G~Y~C~a~N~~  916 (1075)
                           .+...+.. .+.+|+.++|.|.+.|.|.|.|+|+|||..+..+...      .|.+......|+|.|+|.|.|.+
T Consensus       314 -----~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  388 (403)
T 3laf_A          314 -----WFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEA  388 (403)
T ss_dssp             -----EEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEETT
T ss_pred             -----cEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEecCccEEEeccccccCEEEEEEEEcCC
Confidence                 33333332 3678999999999999999999999999998765533      35666777889999999999999


Q ss_pred             eeEEEEEEEEEecC
Q psy16863        917 GTTSSSAALLGFED  930 (1075)
Q Consensus       917 G~~~~~~~l~v~~~  930 (1075)
                      |..++++.|.|.++
T Consensus       389 G~~~~~~~l~V~~P  402 (403)
T 3laf_A          389 GNAQSSAQLIVPKP  402 (403)
T ss_dssp             EEEEEEEEEECCCC
T ss_pred             ceEEEEEEEEEeCC
Confidence            99999999998765

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=4.5e-39  Score=368.82  Aligned_cols=347  Identities=23%  Similarity=0.445  Sum_probs=270.7

Q ss_pred             eeeeecce-EEecCCeEEEEEEEEC-CCCCeEEEEeCCEeccCCC--E------EEEEeCCC-----CCCCcEEEEEEEE
Q psy16863        449 FFTKELEA-ILTEQGTVSLECKVMG-IPTPQLIWYKDNKKIKAGD--I------FALTANPK-----DPSSLGTYTCEAV  513 (1075)
Q Consensus       449 ~~~~~~~~-~~~~g~~v~l~C~~~g-~p~~~v~W~~~g~~l~~~~--~------~~l~i~~~-----~~~d~G~Y~C~a~  513 (1075)
                      .+..++.. .+.+|+.+.|.|.+.+ .|.+.|+|+|+|..+....  +      ..|.+..+     ..+|+|.|+|.|.
T Consensus        23 ~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~D~G~Y~C~~~  102 (403)
T 3laf_A           23 HFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEAS  102 (403)
T ss_dssp             EEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEECTTSCEEECSCCCBTTBCSSCEEEEEEEE
T ss_pred             EEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEEecCCcEEEeeeeccCCCCCcceEEEEEEE
Confidence            44444444 5889999999999987 6778999999999986431  1      13555554     6779999999999


Q ss_pred             ecceeeE--EEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEecCCCCceEEEEeCCeE
Q psy16863        514 NCMGAAF--STSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGV  591 (1075)
Q Consensus       514 n~~g~~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~  591 (1075)
                      |..+...  ....+.|.                    .++.+...+....+.+|+.++|.|.+.+.|.+ .+.|++++..
T Consensus       103 ~~~~~~~~s~~~~l~v~--------------------~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~-~v~W~~~~~~  161 (403)
T 3laf_A          103 LGDSGSIISRTAKVMVA--------------------GPLRFLSQTESITAFMGDTVLLKCEVIGDPMP-TIHWQKNQQD  161 (403)
T ss_dssp             CGGGCEEECCCEEEEEC--------------------CCCEECSCCCCEEEETTSCEEECCCEECSSCC-EEEEEESSSB
T ss_pred             eCCCccEEEEEEEEEec--------------------CCCccccCCCcEEEEcCCeEEEEEEEcccCCC-eEEEEECCEe
Confidence            7654333  23444443                    24556666778889999999999999999877 8999999988


Q ss_pred             Eec---CCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEEeCCCCcCC-Cceeeccc-eeeecCC
Q psy16863        592 VEA---SDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRK-PRFVESLK-AVMTDDG  666 (1075)
Q Consensus       592 i~~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~-p~~~~~~~-~~~~~g~  666 (1075)
                      +..   ..+.....++    .|.|.+++.+|+|.|+|.|.|..|........+.|..++.... +.+..... ..+.+|+
T Consensus       162 ~~~~~~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~  237 (403)
T 3laf_A          162 LNPIPGDSRVVVLPSG----ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGK  237 (403)
T ss_dssp             CCCCTTCCSEEECTTS----CEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTS
T ss_pred             ccccCCceEEEEcCCc----eEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCC
Confidence            743   2233322222    7999999999999999999998887554456677766543322 22333332 3466899


Q ss_pred             eEEEEEEEecCCCCeEEEEECCEEcCCCC---------eEEEe--ecCCCceEEEEEEecCceEEEEEEEEEEeccccCc
Q psy16863        667 LVSFECKVVGFPTPTLQWFKDNEELKPGD---------VYQLT--GTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLS  735 (1075)
Q Consensus       667 ~~~l~C~v~g~p~p~v~W~k~g~~l~~~~---------~~~~~--~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~~  735 (1075)
                      .+.|.|.+.|.|.+.++|+|++..+....         .+.+.  ..+|.|.|+|.|.|..|....++.|.|..      
T Consensus       238 ~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~------  311 (403)
T 3laf_A          238 DAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV------  311 (403)
T ss_dssp             CEEECCEEEEESCCEEEEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE------
T ss_pred             cEEEEEEcCCCCCCeEEEEECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEEC------
Confidence            99999999999999999999999886432         23333  34789999999999999999999999973      


Q ss_pred             hhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCC
Q psy16863        736 EEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVA  815 (1075)
Q Consensus       736 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~  815 (1075)
                                  +|.+...+.+..+..|+.+.|.|.+.|.|.|.++|+|+|..+..+.++.+..  .  ..|.|.+++.+
T Consensus       312 ------------~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~--~--~~L~i~~v~~~  375 (403)
T 3laf_A          312 ------------PPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVG--G--SNLRILGVVKS  375 (403)
T ss_dssp             ------------EEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEET--T--TEEEESSCCGG
T ss_pred             ------------CCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEec--C--ccEEEeccccc
Confidence                        7788888888889999999999999999999999999999998887776642  2  37999999999


Q ss_pred             CCeEEEEEEEeCCceEEEEEEEEEEec
Q psy16863        816 DQAEWKCIATNDFGQSITSCFLKLNVP  842 (1075)
Q Consensus       816 D~G~Y~C~A~N~~G~~~~s~~l~V~~~  842 (1075)
                      |+|.|+|.|.|.+|.+..++.|.|..|
T Consensus       376 d~G~Y~C~a~N~~G~~~~~~~l~V~~P  402 (403)
T 3laf_A          376 DEGFYQCVAENEAGNAQSSAQLIVPKP  402 (403)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred             cCEEEEEEEEcCCceEEEEEEEEEeCC
Confidence            999999999999999999999988765

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=100.00  E-value=2.2e-39  Score=371.64  Aligned_cols=354  Identities=18%  Similarity=0.342  Sum_probs=262.3

Q ss_pred             CCCeeeeeccceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEecCC--cEEEEEcCCceEEEEEe----eeeecCCce
Q psy16863        549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASD--KYHIMADGLGGYSIEIN----YLEAVDDGE  622 (1075)
Q Consensus       549 ~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~~~--~~~~~~~~~~~~~L~i~----~~~~~d~G~  622 (1075)
                      +|......+.+..+.+|+.++|.|.+.+.|.| .+.|++++..+....  ++.+...+   ..|.|.    +++.+|+|.
T Consensus        16 ~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~v~W~k~g~~l~~~~~~~~~~~~~~---~~l~i~~~~~~~~~~D~G~   91 (404)
T 3p3y_A           16 PPTITKQSAKDHIVDPRDNILIECEAKGNPAP-SFHWTRNSRFFNIAKDPRVSMRRRS---GTLVIDFRSGGRPEEYEGE   91 (404)
T ss_dssp             CCCEEEECCTTCEECSSSCCCCCEEECCSSCC-EEEEEETTEECCGGGCSSCBCCSSS---CCCBCCCTTTCCTTSSCEE
T ss_pred             CCcccccCCccEEEcCCCCEEEEEEecCCCCC-eEEEEECCEEeeeecCCcceEecCC---ceEEEEeccCCCCccCCEE
Confidence            34444455778899999999999999998877 899999998875432  22222111   144443    788999999


Q ss_pred             EEEEEECCCCceeeeeEEEEEeCCCCcCCCceeeccceeeecCCeEEEEEEE-ecCCCCeEEEEECCEEc-CCCCeE---
Q psy16863        623 WKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKV-VGFPTPTLQWFKDNEEL-KPGDVY---  697 (1075)
Q Consensus       623 Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~l~C~v-~g~p~p~v~W~k~g~~l-~~~~~~---  697 (1075)
                      |+|.|.|..|........+.|..++....  .. .....+.+|+.+.|.|.+ .+.|.+.++|++++..+ ..+.++   
T Consensus        92 Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~--~~-~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~  168 (404)
T 3p3y_A           92 YQCFARNKFGTALSNRIRLQVSKSPLWPK--EN-LDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQG  168 (404)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCCCCCC--CC-CCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEEC
T ss_pred             EEEEEEcCCCeEeeeeEEEEEeccCcccc--CC-CCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEc
Confidence            99999999988765556677766543211  11 112357789999999999 78899999999987443 233333   


Q ss_pred             -----EEe--ecCC-CceEEEEEEecCceEEEE---EEEEEEeccccCchhhhhhhccCCCCCeEEecc---ceeeeecC
Q psy16863        698 -----QLT--GTSS-LGSYCCVAKNVMGKAESS---TQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL---KSCQATVN  763 (1075)
Q Consensus       698 -----~~~--~~~d-~G~Y~C~a~N~~g~~~~~---~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~~~g  763 (1075)
                           .+.  ...| +|.|+|.|.|..|.....   +.+.|......           ...+|.+....   ....+..|
T Consensus       169 ~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~-----------~~~~p~~~~~~~~~~~~~~~~G  237 (404)
T 3p3y_A          169 HNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGV-----------AERTPSFMYPQGTASSQMVLRG  237 (404)
T ss_dssp             TTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCC-----------CCCCCCBSSSCSSEEEEEEETT
T ss_pred             CCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCc-----------cccCCccccccCCCCCceEecC
Confidence                 332  2256 699999999998864432   44555431110           11355555433   34668899


Q ss_pred             CeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEecC
Q psy16863        764 EEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPK  843 (1075)
Q Consensus       764 ~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~  843 (1075)
                      +.+.|.|.+.|.|.|.++|+|+|..+..... .+. ..  ...|.|.+++.+|+|.|+|.|.|..|....++.|.|..+|
T Consensus       238 ~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~-~~~-~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  313 (404)
T 3p3y_A          238 MDLLLECIASGVPTPDIAWYKKGGDLPSDKA-KFE-NF--NKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAP  313 (404)
T ss_dssp             SCEEEECCBCCSSCCEEEEEETTBCCCTTTE-EEE-GG--GTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEE
T ss_pred             CCEEEEEEECCCCCCcEEEEECCEECCCCcc-ccc-cc--CceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCC
Confidence            9999999999999999999999998876553 221 11  2379999999999999999999999999889999998754


Q ss_pred             CCCCCeeeeecc-eeecCCCeEEEEEEEEccCCCeeEEEECCEEcCCCC--------eeEEEECCCCceeeEEEEEEEEe
Q psy16863        844 HYKKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGD--------IHKIISGEDGTCCLGIYTCEAHN  914 (1075)
Q Consensus       844 ~~~~p~~~~~~~-~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~--------~~~i~~~~~~~~d~G~Y~C~a~N  914 (1075)
                           .+...+. ..+.+|+.++|.|.+.|.|.|.|+|+|||..+..+.        ...|.+......|+|.|+|.|.|
T Consensus       314 -----~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  388 (404)
T 3p3y_A          314 -----YWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSN  388 (404)
T ss_dssp             -----EEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEE
T ss_pred             -----eeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEEe
Confidence                 3443333 347789999999999999999999999999997543        12567777888899999999999


Q ss_pred             CCeeEEEEEEEEEec
Q psy16863        915 CMGTTSSSAALLGFE  929 (1075)
Q Consensus       915 ~~G~~~~~~~l~v~~  929 (1075)
                      .+|..++++.|.|++
T Consensus       389 ~~G~~~~~~~l~V~d  403 (404)
T 3p3y_A          389 EHGYLLANAFVSVLD  403 (404)
T ss_dssp             TTEEEEEEEEEEEC-
T ss_pred             CCCcEEEEEEEEEEe
Confidence            999999999998864

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=7.2e-39  Score=366.04  Aligned_cols=360  Identities=17%  Similarity=0.250  Sum_probs=263.3

Q ss_pred             CCCeeeeeccceEeecCCeEEEEEEEec-CCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEE
Q psy16863        549 PAPIFIKEVENVKAKIGTSAILECQVLV-PPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVA  627 (1075)
Q Consensus       549 ~~~~~~~~~~~~~v~~G~~~~L~C~~~~-~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  627 (1075)
                      .+|.|...+.+..+.+|+.++|.|.+.+ .|.+ .+.|++++..+....+......+  ..+|.|.+++.+|+|.|+|.|
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~-~v~W~k~g~~~~~~~~~~~~~~~--~~~L~i~~~~~~D~G~Y~C~a   81 (395)
T 1bih_A            5 KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGV-KYSWKKDGKSYNWQEHNAALRKD--EGSLVFLRPQASDEGHYQCFA   81 (395)
T ss_dssp             CCCEECCCCSEEEEETTSCEEECCCEESCCSSC-EEEEEESSSBCCTTTTTEEECTT--SCCEEESSCCGGGCEEEEEEE
T ss_pred             CCCEeecCCCceEEeCCCEEEEEEEEecCCCCc-eEEEEECCcCcccccceEEEecC--CceEEEecCCCCCCcEEEEEE
Confidence            4678888888999999999999999999 6655 89999999988766532222222  237999999999999999999


Q ss_pred             ECCCCceeeeeEEEEEeCCCCcCCCceeeccceeeecCCeEEEEEEE-ecCCCCeEEEEECC---EEc------------
Q psy16863        628 TSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKV-VGFPTPTLQWFKDN---EEL------------  691 (1075)
Q Consensus       628 ~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~l~C~v-~g~p~p~v~W~k~g---~~l------------  691 (1075)
                      .|..|........+.+...+.   |.+. .....+.+|+.+.|.|.+ .+.|.+.++|+|++   .+.            
T Consensus        82 ~n~~g~~~s~~~~l~v~~~~~---p~~~-~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~  157 (395)
T 1bih_A           82 ETPAGVASSRVISFRKTYLIA---SPAK-THEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITA  157 (395)
T ss_dssp             EETTEEEECCCEEEEEEEEEC---CCCE-EEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEE
T ss_pred             EeCCCeEEeEEEEEEEEEeec---CCcC-CcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEE
Confidence            999887654444555543221   2221 122345688999999996 78899999999975   111            


Q ss_pred             CCCCeEEEe--ecCCCc---eEEEEEEecCceEEEEEEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCeE
Q psy16863        692 KPGDVYQLT--GTSSLG---SYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEF  766 (1075)
Q Consensus       692 ~~~~~~~~~--~~~d~G---~Y~C~a~N~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~  766 (1075)
                      ..+..+.+.  ..+|.|   .|+|.|.|..|..................     .......+|.+  .+....+..|+.+
T Consensus       158 ~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~p~~--~~~~~~~~~G~~v  230 (395)
T 1bih_A          158 GPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDN-----SGYKGEPVPQY--VSKDMMAKAGDVT  230 (395)
T ss_dssp             CTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCS-----SCCCCCCEEEE--ECCSEEEETTSCE
T ss_pred             cCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEeccccccc-----ccccCCcCcee--cCCceEEECCCcE
Confidence            112233333  347889   99999999999865543332221100000     00001124444  2456778999999


Q ss_pred             EEEEEEecCCCCeEEEEECCEEeecCCcEEEEEe-eCcEEEEEEccccCCCCeEEEEEEEeCCceEEE-EEEEEEEecCC
Q psy16863        767 KFTVQVSISPEPKVSWFRDDQQVVESDNVKILKE-TLGVCHLKIHALEVADQAEWKCIATNDFGQSIT-SCFLKLNVPKH  844 (1075)
Q Consensus       767 ~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~-s~~l~V~~~~~  844 (1075)
                      .|.|.+.|.|.|.++|+|+|..+.......+... ......|.|.+++.+|+|.|+|.|.|..|.... ++.|.|..+| 
T Consensus       231 ~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P-  309 (395)
T 1bih_A          231 MIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAP-  309 (395)
T ss_dssp             EEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEE-
T ss_pred             EEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCC-
Confidence            9999999999999999999999876543322211 112237999999999999999999999999766 8899998754 


Q ss_pred             CCCCeeeeecc--eeecCCCeEEEEEEEEccCCCeeEEEECCEEcCCCCe----eEEEECCCCceeeEEEEEEEEeCCee
Q psy16863        845 YKKPKFLEELK--AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDI----HKIISGEDGTCCLGIYTCEAHNCMGT  918 (1075)
Q Consensus       845 ~~~p~~~~~~~--~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~----~~i~~~~~~~~d~G~Y~C~a~N~~G~  918 (1075)
                          .+...+.  ..+.+|+.++|.|.+.|.|.|.|+|+|||.++..+..    ..|.+......|+|.|+|.|.|.+|.
T Consensus       310 ----~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~  385 (395)
T 1bih_A          310 ----KYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGD  385 (395)
T ss_dssp             ----EEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEE
T ss_pred             ----ccccCCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCCceEEECCEEEEeeCCcccCEEEEEEEEccCCC
Confidence                4443333  3478999999999999999999999999999976521    15667777788999999999999999


Q ss_pred             EEEEEEEEE
Q psy16863        919 TSSSAALLG  927 (1075)
Q Consensus       919 ~~~~~~l~v  927 (1075)
                      .++++.|.|
T Consensus       386 ~~~~~~l~V  394 (395)
T 1bih_A          386 KYFETLVQV  394 (395)
T ss_dssp             EEEEEEEEE
T ss_pred             ceEEEEEEE
Confidence            999998876

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=2.2e-38  Score=360.00  Aligned_cols=346  Identities=19%  Similarity=0.318  Sum_probs=262.1

Q ss_pred             CCeeeeeccceEe---ecCCeEEEEEEEecCCCCceEEEEeCCeEEecC--CcEEEEEcCCceEEEEEeeeee-cCCceE
Q psy16863        550 APIFIKEVENVKA---KIGTSAILECQVLVPPWPRSIYWYNKEGVVEAS--DKYHIMADGLGGYSIEINYLEA-VDDGEW  623 (1075)
Q Consensus       550 ~~~~~~~~~~~~v---~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~~--~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y  623 (1075)
                      +|.|...+.+..+   .+|+.++|.|.+.+.|.| .+.|++++..+...  .++.+ .++    .|.|.++.. +|+|.|
T Consensus         4 ~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~-~v~W~k~g~~~~~~~~~~~~~-~~~----~L~i~~~~~~~D~G~Y   77 (382)
T 1cs6_A            4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPA-TYRWKMNGTELKMGPDSRYRL-VAG----DLVISNPVKAKDAGSY   77 (382)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCC-EEEEEETTEECCCSTTSSEEE-ETT----EEEEESCCHHHHCEEE
T ss_pred             CCEEEECCCcEEEecCCCCCcEEEEEEecCCCCC-EEEEEECCEECCcCCCccEEe-eCC----eEEEecccccccCEEE
Confidence            5777777777776   789999999999998877 89999999988654  34443 233    799999987 999999


Q ss_pred             EEEEECCCCceeeeeEEEEEeCCCCcCCCceeeccceeeecCCeEEEEEEEe-cCCCCeEEEEECCEEcC--CC------
Q psy16863        624 KCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVV-GFPTPTLQWFKDNEELK--PG------  694 (1075)
Q Consensus       624 ~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~l~C~v~-g~p~p~v~W~k~g~~l~--~~------  694 (1075)
                      +|.|.|..|........+.|..++.+...   ......+.+|+.+.|.|.+. +.|.+.++|+|++..+.  .+      
T Consensus        78 ~C~a~n~~g~~~s~~~~l~v~~~~~~~~~---~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~  154 (382)
T 1cs6_A           78 QCVATNARGTVVSREASLRFGFLQEFSAE---ERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVS  154 (382)
T ss_dssp             EEEEEETTEEEECCCEEEEEEEECCCCSS---CCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEEC
T ss_pred             EEEEEcCCcEEEecceEEEeecccccccc---CCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEe
Confidence            99999998876544456666654322111   11223467899999999964 56889999999986642  12      


Q ss_pred             ---CeEEEe--ecCCCceEEEEEEecCceEEEE-----EEEEEEeccccCchhhhhhhccCCCCCeEEec-cceeeeecC
Q psy16863        695 ---DVYQLT--GTSSLGSYCCVAKNVMGKAESS-----TQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEG-LKSCQATVN  763 (1075)
Q Consensus       695 ---~~~~~~--~~~d~G~Y~C~a~N~~g~~~~~-----~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~g  763 (1075)
                         ..+.+.  ..+|.|.|+|.|.|..|.....     +.|.|...            .....+|.+... +....+..|
T Consensus       155 ~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~------------~~~~~~P~~~~~~~~~~~~~~G  222 (382)
T 1cs6_A          155 QTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAE------------DARQYAPSIKAKFPADTYALTG  222 (382)
T ss_dssp             TTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESC------------CCCCEEEEEEECCCSEEEEETT
T ss_pred             cCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchh------------hcccCCCceeccCCCceEEeCC
Confidence               223333  2378999999999988644332     34444321            001135555543 456778999


Q ss_pred             CeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEecC
Q psy16863        764 EEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPK  843 (1075)
Q Consensus       764 ~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~  843 (1075)
                      +.+.|.|.+.|.|.|.+.|+|++..+....       ......|.|.+++.+|+|.|+|.|.|..|....++.|.|..+|
T Consensus       223 ~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~-------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  295 (382)
T 1cs6_A          223 QMVTLECFAFGNPVPQIKWRKLDGSQTSKW-------LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQP  295 (382)
T ss_dssp             CCEEEECEEEEESCCEEEEEECCSCCSCCC-------SBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEE
T ss_pred             CeEEEEEEEccCCCCEEEEEECCcccccEE-------ecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCC
Confidence            999999999999999999999987765311       1123479999999999999999999999999889999998754


Q ss_pred             CCCCCeeeeecce-eecCCCeEEEEEEEEccCCCeeEEEECCEEcCCCCee-----EEEECCCCceeeEEEEEEEEeCCe
Q psy16863        844 HYKKPKFLEELKA-VLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIH-----KIISGEDGTCCLGIYTCEAHNCMG  917 (1075)
Q Consensus       844 ~~~~p~~~~~~~~-~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~~-----~i~~~~~~~~d~G~Y~C~a~N~~G  917 (1075)
                           .+...+.. .+.+|+.++|.|.+.|.|.|.|+|+|||.++..+.+.     .|.+......|+|.|+|.|.|.+|
T Consensus       296 -----~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G  370 (382)
T 1cs6_A          296 -----DWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHG  370 (382)
T ss_dssp             -----EEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             -----CcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEECCEEEECcCCcccCEEEEEEEEeCCC
Confidence                 33333332 3778999999999999999999999999999876543     466777778899999999999999


Q ss_pred             eEEEEEEEEEe
Q psy16863        918 TTSSSAALLGF  928 (1075)
Q Consensus       918 ~~~~~~~l~v~  928 (1075)
                      ..++++.|.|.
T Consensus       371 ~~~~~~~l~V~  381 (382)
T 1cs6_A          371 TVYASAELTVQ  381 (382)
T ss_dssp             EEEEEEEEEEE
T ss_pred             eEEEEEEEEEe
Confidence            99999999875

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=100.00  E-value=2.1e-38  Score=361.11  Aligned_cols=339  Identities=23%  Similarity=0.376  Sum_probs=257.8

Q ss_pred             CCeeeeecce--EEecCCeEEEEEEEECCCCCeEEEEe-CCEeccCC-------CEEEEEeCCCCCCC------cEEEEE
Q psy16863        447 APFFTKELEA--ILTEQGTVSLECKVMGIPTPQLIWYK-DNKKIKAG-------DIFALTANPKDPSS------LGTYTC  510 (1075)
Q Consensus       447 ~p~~~~~~~~--~~~~g~~v~l~C~~~g~p~~~v~W~~-~g~~l~~~-------~~~~l~i~~~~~~d------~G~Y~C  510 (1075)
                      +|.|...+..  .+.+|+.+.|.|.+.|.|.+.|+|+| ||..+...       ....|.|..+..+|      +|.|+|
T Consensus         3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~C   82 (388)
T 2v5m_A            3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYAC   82 (388)
T ss_dssp             EEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEEEE
T ss_pred             CCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceEEcCCceEEecccChhhccccccCceEEE
Confidence            3456655543  26789999999999999999999999 78877542       12368899998887      999999


Q ss_pred             EEEecceeeE-EEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEecCCCC--ceEEEEe
Q psy16863        511 EAVNCMGAAF-STSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWP--RSIYWYN  587 (1075)
Q Consensus       511 ~a~n~~g~~~-~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p--~~v~W~~  587 (1075)
                      .|.|..|... ....+.+.                    .+|.+...+....+.+|+.++|.|.+.+.+.+  ..+.|++
T Consensus        83 ~a~n~~g~~~s~~~~v~v~--------------------~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~  142 (388)
T 2v5m_A           83 LARNQFGSIISRDVHVRAV--------------------VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHT  142 (388)
T ss_dssp             EEEETTEEEECCCEEEEEE--------------------CCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEE
T ss_pred             EEEccCCeEEecceEEEEc--------------------cccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEe
Confidence            9999998753 34455554                    12334444566789999999999999886531  4899999


Q ss_pred             CCeEEec-----CCcEEEEEcCCceEEEEEeeeeecCC-ceEEEEEECCCCceeee---eEEEEEeCCCCcCCCc---ee
Q psy16863        588 KEGVVEA-----SDKYHIMADGLGGYSIEINYLEAVDD-GEWKCVATSSSGVKQFS---AAYVHVLMPKNYRKPR---FV  655 (1075)
Q Consensus       588 ~~~~i~~-----~~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~n~~g~~~~~---~~~l~v~~p~~~~~p~---~~  655 (1075)
                      ++..+..     ..++.+..++    .|.|.+++.+|+ |.|+|.|.|..+.....   ...+.|..|.....|.   +.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~----~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~  218 (388)
T 2v5m_A          143 DEEENYFPGAEYDGKYLVLPSG----ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALV  218 (388)
T ss_dssp             TTCCEECSSSCBTTTEEECTTS----CEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSC
T ss_pred             CCCcccccccCCCCcEEEccCC----cEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCcccc
Confidence            9887643     3344444333    799999999999 99999999986543211   1245666553222222   22


Q ss_pred             eccceeeecCCeEEEEEEEecCCCCeEEEEECCEE------cCCCC-------eEEEe--ecCCCceEEEEEEecCceEE
Q psy16863        656 ESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEE------LKPGD-------VYQLT--GTSSLGSYCCVAKNVMGKAE  720 (1075)
Q Consensus       656 ~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~------l~~~~-------~~~~~--~~~d~G~Y~C~a~N~~g~~~  720 (1075)
                      .. ...+..|+.+.|.|.+.|.|.|.++|+|++..      +..+.       .+.+.  ..+|+|.|+|.|.|..|...
T Consensus       219 ~~-~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  297 (388)
T 2v5m_A          219 QK-PLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGES  297 (388)
T ss_dssp             CC-CEEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEEE
T ss_pred             CC-ceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCcee
Confidence            11 12466789999999999999999999997432      22222       23333  34789999999999999998


Q ss_pred             EEEEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEe
Q psy16863        721 SSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKE  800 (1075)
Q Consensus       721 ~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~  800 (1075)
                      ..+.|.|..                  +|.+...+....+..|+++.|.|.+.|.|.|.|+|+|+|..+..+.       
T Consensus       298 ~~~~l~V~~------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~~-------  352 (388)
T 2v5m_A          298 VETVLTVTA------------------PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE-------  352 (388)
T ss_dssp             EEEEEEEEE------------------EEEEEEESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCCS-------
T ss_pred             EEEEEEEeC------------------CCccccCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECccCC-------
Confidence            889999974                  6666666777889999999999999999999999999999986532       


Q ss_pred             eCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863        801 TLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL  839 (1075)
Q Consensus       801 ~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V  839 (1075)
                          ..|.|.+++.+|+|.|+|.|.|.+|.+..++.|.|
T Consensus       353 ----~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          353 ----SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             ----SEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             ----CEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence                27999999999999999999999999998888876

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=100.00  E-value=1.5e-38  Score=364.61  Aligned_cols=351  Identities=19%  Similarity=0.375  Sum_probs=263.4

Q ss_pred             CCCeeeee-c-ceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccCC---------CEEEEEeC----CCCCCCcEEEEE
Q psy16863        446 KAPFFTKE-L-EAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAG---------DIFALTAN----PKDPSSLGTYTC  510 (1075)
Q Consensus       446 ~~p~~~~~-~-~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~---------~~~~l~i~----~~~~~d~G~Y~C  510 (1075)
                      .+|.+... + ...+.+|+.+.|.|.+.|.|.+.|+|+|+|..+...         ....|.+.    .+..+|+|.|+|
T Consensus        15 ~~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~Y~C   94 (404)
T 3p3y_A           15 QPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQC   94 (404)
T ss_dssp             CCCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEEEEE
T ss_pred             CCCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEEEEE
Confidence            34455532 3 335889999999999999999999999999987431         11233443    677899999999


Q ss_pred             EEEecceeeE-EEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEE-ecCCCCceEEEEeC
Q psy16863        511 EAVNCMGAAF-STSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQV-LVPPWPRSIYWYNK  588 (1075)
Q Consensus       511 ~a~n~~g~~~-~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~-~~~p~p~~v~W~~~  588 (1075)
                      .|.|..|... ..+.|.|...                   |...........+.+|+.++|.|.+ .+.|.+ .+.|+++
T Consensus        95 ~a~n~~g~~~s~~~~l~V~~~-------------------p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~-~v~W~~~  154 (404)
T 3p3y_A           95 FARNKFGTALSNRIRLQVSKS-------------------PLWPKENLDPVVVQEGAPLTLQCNPPPGLPSP-VIFWMSS  154 (404)
T ss_dssp             EEECSSCEEEEEEEEEEECCC-------------------CCCCCCCCCCEEEETTSCEEECCCCCCCSSCC-EEEEECT
T ss_pred             EEEcCCCeEeeeeEEEEEecc-------------------CccccCCCCCeEEccCCcEEEEeCCCCCCCCC-eEEEeCC
Confidence            9999998874 4566776521                   2222223345778999999999999 677766 8999998


Q ss_pred             CeEEe-cCCcEEEEEcCCceEEEEEeeeeecC-CceEEEEEECCCCceeeee--EEEEEeCCCC--cCCCceeecc----
Q psy16863        589 EGVVE-ASDKYHIMADGLGGYSIEINYLEAVD-DGEWKCVATSSSGVKQFSA--AYVHVLMPKN--YRKPRFVESL----  658 (1075)
Q Consensus       589 ~~~i~-~~~~~~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~~~~~~--~~l~v~~p~~--~~~p~~~~~~----  658 (1075)
                      +.... ...++....++    .|.|.++...| +|.|+|.|.|..|......  ..+.+...+.  ...|.+....    
T Consensus       155 ~~~~~~~~~~~~~~~~~----~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~  230 (404)
T 3p3y_A          155 SMEPITQDKRVSQGHNG----DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTAS  230 (404)
T ss_dssp             TSCBCCCCSSEEECTTS----CEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEE
T ss_pred             CccccCCCCcEEEcCCC----cEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCC
Confidence            75443 34444443333    69999999999 6999999999988643222  2344432211  1223333221    


Q ss_pred             ceeeecCCeEEEEEEEecCCCCeEEEEECCEEcCCCCe--------EEEe--ecCCCceEEEEEEecCceEEEEEEEEEE
Q psy16863        659 KAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDV--------YQLT--GTSSLGSYCCVAKNVMGKAESSTQLTIE  728 (1075)
Q Consensus       659 ~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~--------~~~~--~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  728 (1075)
                      ...+.+|+.+.|.|.+.|.|.+.++|+|+|..+..+..        +.+.  ..+|+|.|+|.|.|..|.....+.|.|.
T Consensus       231 ~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  310 (404)
T 3p3y_A          231 SQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVK  310 (404)
T ss_dssp             EEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCcccccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEe
Confidence            22467899999999999999999999999998865542        3333  3478999999999999999999999997


Q ss_pred             eccccCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEE
Q psy16863        729 DIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLK  808 (1075)
Q Consensus       729 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~  808 (1075)
                      .                  +|.|...+.+..+..|+.+.|.|.+.|.|.|.++|+|+|..+..+..........+  .|.
T Consensus       311 ~------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~--~L~  370 (404)
T 3p3y_A          311 A------------------APYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGD--TII  370 (404)
T ss_dssp             E------------------EEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETT--EEE
T ss_pred             C------------------CCeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEecCC--EEE
Confidence            4                  77888888888899999999999999999999999999999976542111112223  799


Q ss_pred             EccccCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy16863        809 IHALEVADQAEWKCIATNDFGQSITSCFLKLN  840 (1075)
Q Consensus       809 I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~  840 (1075)
                      |.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus       371 i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  402 (404)
T 3p3y_A          371 FRDTQISSRAVYQCNTSNEHGYLLANAFVSVL  402 (404)
T ss_dssp             ESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EeecCHHHCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            99999999999999999999999999888875

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=1.7e-38  Score=361.03  Aligned_cols=348  Identities=22%  Similarity=0.389  Sum_probs=264.3

Q ss_pred             CCeeeeecceEE----ecCCeEEEEEEEECCCCCeEEEEeCCEeccCC--CEE-----EEEeCCCCC-CCcEEEEEEEEe
Q psy16863        447 APFFTKELEAIL----TEQGTVSLECKVMGIPTPQLIWYKDNKKIKAG--DIF-----ALTANPKDP-SSLGTYTCEAVN  514 (1075)
Q Consensus       447 ~p~~~~~~~~~~----~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~--~~~-----~l~i~~~~~-~d~G~Y~C~a~n  514 (1075)
                      +|.|...+...+    .+|+.+.|.|.+.|.|.+.|+|+|+|.++..+  .++     .|.|..+.. +|+|.|+|.|.|
T Consensus         4 ~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n   83 (382)
T 1cs6_A            4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATN   83 (382)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEE
T ss_pred             CCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEeeCCeEEEecccccccCEEEEEEEEc
Confidence            456666655543    58999999999999999999999999998653  222     577777776 999999999999


Q ss_pred             cceeeEE-EEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEe-cCCCCceEEEEeCCeEE
Q psy16863        515 CMGAAFS-TSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVL-VPPWPRSIYWYNKEGVV  592 (1075)
Q Consensus       515 ~~g~~~~-~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~-~~p~p~~v~W~~~~~~i  592 (1075)
                      ..|.... .+.+.|...+                   ...........+.+|+.++|.|.+. +.|.+ .+.|++++..+
T Consensus        84 ~~g~~~s~~~~l~v~~~~-------------------~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~-~i~W~~~~~~~  143 (382)
T 1cs6_A           84 ARGTVVSREASLRFGFLQ-------------------EFSAEERDPVKITEGWGVMFTCSPPPHYPAL-SYRWLLNEFPN  143 (382)
T ss_dssp             TTEEEECCCEEEEEEEEC-------------------CCCSSCCCCEEEETTSCEEECCCCCSEESCC-EEEEEESSTTC
T ss_pred             CCcEEEecceEEEeeccc-------------------cccccCCCceEEecCCcEEEEeCCCCCCCCc-EEEEEECCCcc
Confidence            9987643 4566664211                   1111224567789999999999964 44555 89999998764


Q ss_pred             e--cCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceeee----eEEEEEeCCC-CcCCCceeecc--ceeee
Q psy16863        593 E--ASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFS----AAYVHVLMPK-NYRKPRFVESL--KAVMT  663 (1075)
Q Consensus       593 ~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~----~~~l~v~~p~-~~~~p~~~~~~--~~~~~  663 (1075)
                      .  ...+..+. ..  ...|.|.+++.+|+|.|+|.+.|..|.....    ...+.+.... ...+|.+....  ...+.
T Consensus       144 ~~~~~~~~~~~-~~--~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~  220 (382)
T 1cs6_A          144 FIPADGRRFVS-QT--TGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYAL  220 (382)
T ss_dssp             BCCCCSSEEEC-TT--TCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEE
T ss_pred             ccccCceEEEe-cC--ceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEe
Confidence            3  22333222 21  2379999999999999999999987543221    2234433211 11134333221  23467


Q ss_pred             cCCeEEEEEEEecCCCCeEEEEECCEEcCC-----CCeEEEe--ecCCCceEEEEEEecCceEEEEEEEEEEeccccCch
Q psy16863        664 DDGLVSFECKVVGFPTPTLQWFKDNEELKP-----GDVYQLT--GTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSE  736 (1075)
Q Consensus       664 ~g~~~~l~C~v~g~p~p~v~W~k~g~~l~~-----~~~~~~~--~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~~~  736 (1075)
                      .|+.+.|.|.+.|.|.|.+.|+|++..+..     +..+.+.  ..+|.|.|+|.|.|..|.....+.|.|..       
T Consensus       221 ~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-------  293 (382)
T 1cs6_A          221 TGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA-------  293 (382)
T ss_dssp             TTCCEEEECEEEEESCCEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE-------
T ss_pred             CCCeEEEEEEEccCCCCEEEEEECCcccccEEecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEec-------
Confidence            899999999999999999999998877642     3345554  34789999999999999998899999874       


Q ss_pred             hhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCC
Q psy16863        737 EDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVAD  816 (1075)
Q Consensus       737 ~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D  816 (1075)
                                 +|.|...+....+..|+.+.|.|.+.|.|.|.++|+|+|.++..+.++.+.   .+  .|.|.+++.+|
T Consensus       294 -----------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~---~~--~L~i~~v~~~d  357 (382)
T 1cs6_A          294 -----------QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS---GG--ELRFSKLVLED  357 (382)
T ss_dssp             -----------EEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE---TT--EEEESSCCGGG
T ss_pred             -----------CCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEE---CC--EEEECcCCccc
Confidence                       778888888888999999999999999999999999999999888777653   22  79999999999


Q ss_pred             CeEEEEEEEeCCceEEEEEEEEEE
Q psy16863        817 QAEWKCIATNDFGQSITSCFLKLN  840 (1075)
Q Consensus       817 ~G~Y~C~A~N~~G~~~~s~~l~V~  840 (1075)
                      +|.|+|.|.|.+|....++.|.|.
T Consensus       358 ~G~Y~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          358 SGMYQCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CEEEEEEEEeCCCeEEEEEEEEEe
Confidence            999999999999999999998885

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=2.5e-38  Score=361.50  Aligned_cols=343  Identities=19%  Similarity=0.285  Sum_probs=261.4

Q ss_pred             CCeeeeecceE-EecCCeEEEEEEEEC-CCCCeEEEEeCCEeccCCC--------EEEEEeCCCCCCCcEEEEEEEEecc
Q psy16863        447 APFFTKELEAI-LTEQGTVSLECKVMG-IPTPQLIWYKDNKKIKAGD--------IFALTANPKDPSSLGTYTCEAVNCM  516 (1075)
Q Consensus       447 ~p~~~~~~~~~-~~~g~~v~l~C~~~g-~p~~~v~W~~~g~~l~~~~--------~~~l~i~~~~~~d~G~Y~C~a~n~~  516 (1075)
                      +|.|...+... +.+|+.+.|.|.+.+ .|.+.|+|+|+|..+....        ...|.|..+...|+|.|+|.|.|..
T Consensus         6 ~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~   85 (395)
T 1bih_A            6 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPA   85 (395)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEEEEeCC
Confidence            45666555544 789999999999998 8889999999999886543        2368999999999999999999998


Q ss_pred             eeeEE-EEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEE-ecCCCCceEEEEeCCe---E
Q psy16863        517 GAAFS-TSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQV-LVPPWPRSIYWYNKEG---V  591 (1075)
Q Consensus       517 g~~~~-~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~-~~~p~p~~v~W~~~~~---~  591 (1075)
                      |.... .+.+.|...                  +.|.+  .+.+..+.+|+.++|.|.+ .+.|.+ .+.|++++.   .
T Consensus        86 g~~~s~~~~l~v~~~------------------~~p~~--~~~~~~~~~G~~v~l~C~~~~~~p~~-~v~W~~~~~~~~~  144 (395)
T 1bih_A           86 GVASSRVISFRKTYL------------------IASPA--KTHEKTPIEGRPFQLDCVLPNAYPKP-LITWKKRLSGADP  144 (395)
T ss_dssp             EEEECCCEEEEEEEE------------------ECCCC--EEEEECCBTTEEEEECCCCCEEESCC-EEEEEEEETTSCG
T ss_pred             CeEEeEEEEEEEEEe------------------ecCCc--CCcceeeeeCCcEEEEecCCCCCCCC-eEEEEecCCCcCc
Confidence            87653 245554321                  01111  2346678899999999996 777876 899999861   1


Q ss_pred             Eec----CCcEEEEEcCCceEEEEEeeeeecCCc---eEEEEEECCCCceeeeeEEEEEeC--CCC-----cCCCceeec
Q psy16863        592 VEA----SDKYHIMADGLGGYSIEINYLEAVDDG---EWKCVATSSSGVKQFSAAYVHVLM--PKN-----YRKPRFVES  657 (1075)
Q Consensus       592 i~~----~~~~~~~~~~~~~~~L~i~~~~~~d~G---~Y~C~a~n~~g~~~~~~~~l~v~~--p~~-----~~~p~~~~~  657 (1075)
                      ...    ..++....++    .|.|.+++.+|+|   .|+|.|.|..|..........+..  +..     ...|.+. .
T Consensus       145 ~~~~~~~~~~~~~~~~~----~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~  219 (395)
T 1bih_A          145 NADVTDFDRRITAGPDG----NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYV-S  219 (395)
T ss_dssp             GGCCCCCCTTEEECTTS----CEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEE-C
T ss_pred             ccccccccccEEEcCCC----cEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCceec-C
Confidence            111    3344443333    6999999999999   999999999988543322222211  110     0123331 2


Q ss_pred             cceeeecCCeEEEEEEEecCCCCeEEEEECCEEcCCCC-------------eEEEe--ecCCCceEEEEEEecCceEEE-
Q psy16863        658 LKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD-------------VYQLT--GTSSLGSYCCVAKNVMGKAES-  721 (1075)
Q Consensus       658 ~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~-------------~~~~~--~~~d~G~Y~C~a~N~~g~~~~-  721 (1075)
                      ....+.+|+.+.|.|.+.|.|.+.++|+|+|..+....             .+.+.  ..+|+|.|+|.|.|..|.... 
T Consensus       220 ~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  299 (395)
T 1bih_A          220 KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKH  299 (395)
T ss_dssp             CSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEE
T ss_pred             CceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEE
Confidence            23357789999999999999999999999999886431             34443  337899999999999999766 


Q ss_pred             EEEEEEEeccccCchhhhhhhccCCCCCeEEeccce-eeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEe
Q psy16863        722 STQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKS-CQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKE  800 (1075)
Q Consensus       722 ~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~  800 (1075)
                      ++.|.|..                  +|.|...+.. ..+..|+.+.|.|.+.|.|.|.++|+|+|.++..+ ++.+.  
T Consensus       300 ~~~l~V~~------------------~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~--  358 (395)
T 1bih_A          300 SLKLTVVS------------------APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVT--  358 (395)
T ss_dssp             EEEEEEEE------------------EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEE--
T ss_pred             EEEEEEEc------------------CCccccCCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCC-ceEEE--
Confidence            88999874                  7788877766 77899999999999999999999999999998765 55542  


Q ss_pred             eCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863        801 TLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL  839 (1075)
Q Consensus       801 ~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V  839 (1075)
                       .+  .|.|.+++.+|+|.|+|.|.|.+|....++.|.|
T Consensus       359 -~~--~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          359 -DS--GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             -TT--EEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             -CC--EEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence             23  7999999999999999999999999988888876

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=100.00  E-value=7.8e-38  Score=356.44  Aligned_cols=346  Identities=22%  Similarity=0.345  Sum_probs=254.1

Q ss_pred             CCeeeeeccc-eEeecCCeEEEEEEEecCCCCceEEEEe-CCeEEecCCcEEEEEcCCceEEEEEeeeeecC------Cc
Q psy16863        550 APIFIKEVEN-VKAKIGTSAILECQVLVPPWPRSIYWYN-KEGVVEASDKYHIMADGLGGYSIEINYLEAVD------DG  621 (1075)
Q Consensus       550 ~~~~~~~~~~-~~v~~G~~~~L~C~~~~~p~p~~v~W~~-~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d------~G  621 (1075)
                      +|.|...+.+ ..+.+|+.++|.|.+.|.|.| .|.|++ ++..+....++.....+ +  .|.|.+++.+|      +|
T Consensus         3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p-~v~W~k~~g~~~~~~~~~~~~~~~-~--~L~i~~~~~~d~~~~~d~G   78 (388)
T 2v5m_A            3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMP-EIIWIRSDGTAVGDVPGLRQISSD-G--KLVFPPFRAEDYRQEVHAQ   78 (388)
T ss_dssp             EEEEEECCCSEEEEETTTCEEEECEEEEESCC-EEEEEETTSCBCCCBTTTBEECST-T--EEEECCCCGGGCCHHHHEE
T ss_pred             CCchhhCCCceEEEEcCccEEEEEECCCCCCC-EEEEEcCCCCccccCCCceEEcCC-c--eEEecccChhhccccccCc
Confidence            4556655554 567899999999999999877 899999 66666544443333222 1  79999999987      99


Q ss_pred             eEEEEEECCCCceeeeeEEEEEeCCCCcCCCceeeccceeeecCCeEEEEEEEecCCC---CeEEEEECCEEcCC-----
Q psy16863        622 EWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPT---PTLQWFKDNEELKP-----  693 (1075)
Q Consensus       622 ~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~l~C~v~g~p~---p~v~W~k~g~~l~~-----  693 (1075)
                      .|+|.|.|..|........+.+..++.+..+    .....+.+|+.+.|.|.+.+.|.   +.++|++++..+..     
T Consensus        79 ~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~----~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~  154 (388)
T 2v5m_A           79 VYACLARNQFGSIISRDVHVRAVVAQYYEAD----VNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEY  154 (388)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEECCCCCCCB----CCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCB
T ss_pred             eEEEEEEccCCeEEecceEEEEccccccccC----ccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCC
Confidence            9999999999876544556666665433221    12235678999999999988653   78999999876532     


Q ss_pred             --------CCeEEEe--ecCCC-ceEEEEEEecCceEEE-E---EEEEEEeccccCchhhhhhhccCCCCCeEEe-ccce
Q psy16863        694 --------GDVYQLT--GTSSL-GSYCCVAKNVMGKAES-S---TQLTIEDIRNHLSEEDKLLLLTNNKAPKFIE-GLKS  757 (1075)
Q Consensus       694 --------~~~~~~~--~~~d~-G~Y~C~a~N~~g~~~~-~---~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~  757 (1075)
                              +..+.+.  ..+|. |.|+|.|.|..+.... +   ..|.|......             .+|.+.. ....
T Consensus       155 ~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~-------------~~p~~~~~~~~~  221 (388)
T 2v5m_A          155 DGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISS-------------SAPRTPALVQKP  221 (388)
T ss_dssp             TTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSC-------------EEEECCSSCCCC
T ss_pred             CCcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcC-------------CCCcCccccCCc
Confidence                    1233343  23677 9999999998654332 2   24555531100             0122111 1223


Q ss_pred             eeeecCCeEEEEEEEecCCCCeEEEEECCEE------eecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceE
Q psy16863        758 CQATVNEEFKFTVQVSISPEPKVSWFRDDQQ------VVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQS  831 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~------i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~  831 (1075)
                      ..+.+|+.+.|.|.+.|.|.|.|+|+|++..      +....++..   ..+  .|.|.+++.+|+|.|+|.|.|..|..
T Consensus       222 ~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~---~~~--~L~i~~v~~~d~G~Y~C~a~n~~g~~  296 (388)
T 2v5m_A          222 LELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQ---VSG--TLIIKDAVVEDSGKYLCVVNNSVGGE  296 (388)
T ss_dssp             EEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEE---ETT--EEEESSCCGGGCEEEEEEEECSSCEE
T ss_pred             eEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceec---ccC--EEEECcCCHHHCeEEEEEEecCCCce
Confidence            4578899999999999999999999998532      223334332   122  79999999999999999999999999


Q ss_pred             EEEEEEEEEecCCCCCCeeeeec-ceeecCCCeEEEEEEEEccCCCeeEEEECCEEcCCCCeeEEEECCCCceeeEEEEE
Q psy16863        832 ITSCFLKLNVPKHYKKPKFLEEL-KAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTC  910 (1075)
Q Consensus       832 ~~s~~l~V~~~~~~~~p~~~~~~-~~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~~~i~~~~~~~~d~G~Y~C  910 (1075)
                      ..++.|.|..|+.     +...+ ...+.+|+.++|.|.+.|.|.|.|+|+|||.+|..+. ..|.+......|+|.|+|
T Consensus       297 ~~~~~l~V~~~p~-----~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~~-~~L~i~~v~~~d~G~Y~C  370 (388)
T 2v5m_A          297 SVETVLTVTAPLS-----AKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE-SVLRIESVKKEDKGMYQC  370 (388)
T ss_dssp             EEEEEEEEEEEEE-----EEEESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCCS-SEEEESSCCGGGCEEEEE
T ss_pred             eEEEEEEEeCCCc-----cccCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECccCC-CEEEEecCChhhCEEEEE
Confidence            8899999987643     22222 2347799999999999999999999999999997654 467778888899999999


Q ss_pred             EEEeCCeeEEEEEEEEE
Q psy16863        911 EAHNCMGTTSSSAALLG  927 (1075)
Q Consensus       911 ~a~N~~G~~~~~~~l~v  927 (1075)
                      .|.|.+|++++++.|.|
T Consensus       371 ~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          371 FVRNDRESAEASAELKL  387 (388)
T ss_dssp             EEECSSCEEEEEEEEEE
T ss_pred             EEEcCCCcEEEEEEEEe
Confidence            99999999999998876

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=100.00  E-value=1.6e-35  Score=343.26  Aligned_cols=350  Identities=16%  Similarity=0.258  Sum_probs=241.0

Q ss_pred             eeeeccceEeecCCeEEEEEEEecCCCC---ceEEEEeCC--eEEe------------cCCcEEEEEcCCceEEEEEeee
Q psy16863        553 FIKEVENVKAKIGTSAILECQVLVPPWP---RSIYWYNKE--GVVE------------ASDKYHIMADGLGGYSIEINYL  615 (1075)
Q Consensus       553 ~~~~~~~~~v~~G~~~~L~C~~~~~p~p---~~v~W~~~~--~~i~------------~~~~~~~~~~~~~~~~L~i~~~  615 (1075)
                      +...+..+.+.+|+.++|.|.+.+.+.+   ..+.|++++  ..+.            ...++.+..++ +...|.|.++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v   82 (438)
T 1qgc_4            4 LTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSR-TDFTLTIDPV   82 (438)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEET-TEEEEEESSC
T ss_pred             eEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccC-CcEEEEeCCC
Confidence            3445677889999999999999887753   479999963  2210            13466555433 4568999999


Q ss_pred             eecCCceEEEEEECCCCceeeeeEEEEEeCCCCcCCCceee-ccceeeecCCeEEEEEEEec-CCCC-eEEEEECCEEcC
Q psy16863        616 EAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVE-SLKAVMTDDGLVSFECKVVG-FPTP-TLQWFKDNEELK  692 (1075)
Q Consensus       616 ~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~-~~~~~~~~g~~~~l~C~v~g-~p~p-~v~W~k~g~~l~  692 (1075)
                      +.+|+|.|+|.|.|..+........+.|..+.  .+|.+.. .......+|+.+.|.|.+.| .|.+ .++|+|+|..+.
T Consensus        83 ~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~--~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~  160 (438)
T 1qgc_4           83 EADDVATYYCQQSNEVPLTFGAGTKLDLKRAD--AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ  160 (438)
T ss_dssp             CGGGCEEEEEEECSSTTCCBCCCEEEEECCCC--BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             cCcCCeeEEEEEecCCCccccCceeEEecCCC--CCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcC
Confidence            99999999999999887533333456664322  2354433 12222345789999999987 6777 899999999886


Q ss_pred             CC------------Ce------EEEe--ecCCCceEEEEEEecCceEEEEEEEEEEeccccCchhhhhhhccCCCCCeEE
Q psy16863        693 PG------------DV------YQLT--GTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFI  752 (1075)
Q Consensus       693 ~~------------~~------~~~~--~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~  752 (1075)
                      .+            ..      +.+.  ..+|+|.|+|.|.|..|.....  +.+...                .++.++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~--~~~~~~----------------~~~~~~  222 (438)
T 1qgc_4          161 NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIV--KSFNRN----------------ECEVML  222 (438)
T ss_dssp             TTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEE--EEEETT----------------C-CCEE
T ss_pred             CCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCcee--cccccc----------------cceeEE
Confidence            55            12      2222  2368999999999998875332  233210                123334


Q ss_pred             eccceeeeecCCeEEEEEEEecCC--CCeEEEEEC--CEEee-----------------cCCcEEEEEee-CcEEEEEEc
Q psy16863        753 EGLKSCQATVNEEFKFTVQVSISP--EPKVSWFRD--DQQVV-----------------ESDNVKILKET-LGVCHLKIH  810 (1075)
Q Consensus       753 ~~~~~~~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~i~-----------------~~~~~~~~~~~-~~~~~L~I~  810 (1075)
                      ..+....+.+|+.+.|.|.+.|.|  .+.++|+|+  |+.+.                 ...++.+..+. .+...|.|.
T Consensus       223 ~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~  302 (438)
T 1qgc_4          223 VESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMS  302 (438)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             ecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEEC
Confidence            445567789999999999999998  679999997  54432                 13566665432 346789999


Q ss_pred             cccCCCCeEEEEEEEeCCc-----eEEEEEEEEEEecCCCCCCeee-eecceeecCCCeEEEEEEEEcc-CCC-eeEEEE
Q psy16863        811 ALEVADQAEWKCIATNDFG-----QSITSCFLKLNVPKHYKKPKFL-EELKAVLSEGGAVNLECKVIGV-PQP-TLKWFK  882 (1075)
Q Consensus       811 ~~~~~D~G~Y~C~A~N~~G-----~~~~s~~l~V~~~~~~~~p~~~-~~~~~~~~~g~~~~L~C~v~g~-p~p-~v~W~k  882 (1075)
                      +++.+|+|.|+|.|.|..|     .......|.|...+. .+|.+. ......+.+|+.++|.|.+.|. |.| .|+|+|
T Consensus       303 ~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~-~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~  381 (438)
T 1qgc_4          303 SLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKT-TPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNS  381 (438)
T ss_dssp             SCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCC-BCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGG
T ss_pred             CCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCC-CCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEec
Confidence            9999999999999999554     222345666654221 234432 2223335689999999999998 888 999999


Q ss_pred             CCEEcCC--------CCee----EEEECCCCceeeEEEEEEEEeCCeeEEEEEEE
Q psy16863        883 DGRELKA--------GDIH----KIISGEDGTCCLGIYTCEAHNCMGTTSSSAAL  925 (1075)
Q Consensus       883 ~g~~l~~--------~~~~----~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l  925 (1075)
                      ||.++..        +..+    .|.+......| |.|+|.|.|.+|.......+
T Consensus       382 ~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i  435 (438)
T 1qgc_4          382 GSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI  435 (438)
T ss_dssp             GTCCSSEEECCCEEETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEEC
T ss_pred             CCCCCceeecCccccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceeeec
Confidence            9988752        1222    23443344457 99999999999987665544

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=100.00  E-value=1.6e-36  Score=341.52  Aligned_cols=315  Identities=14%  Similarity=0.152  Sum_probs=235.6

Q ss_pred             ceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEecC--------------CcEEEEEc--CCceEEEEEeeeeecCCce
Q psy16863        559 NVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEAS--------------DKYHIMAD--GLGGYSIEINYLEAVDDGE  622 (1075)
Q Consensus       559 ~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~~--------------~~~~~~~~--~~~~~~L~i~~~~~~d~G~  622 (1075)
                      .+.+.+|+.++|.|.+.+.|.+ .+.|++++..+...              .++.+..+  ..+...|.|.+++.+|+|.
T Consensus         3 ~v~~~~G~~v~L~C~~~~~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~   81 (363)
T 1wio_A            3 VVLGKKGDTVELTCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT   81 (363)
T ss_dssp             EEEEETTSCEEECCCCTTCSSC-CEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEE
T ss_pred             eEEEeCCCeEEEEEEecCCCce-EEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEE
Confidence            3567899999999999988876 89999998642211              12222110  1124579999999999999


Q ss_pred             EEEEEECCCCceeeeeEEEEEeCCCCcCCCceeeccceeeecCCeEEEEEEEecCCCCeEEEEECCEEcC-CCCeEEEe-
Q psy16863        623 WKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELK-PGDVYQLT-  700 (1075)
Q Consensus       623 Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~l~-~~~~~~~~-  700 (1075)
                      |+|.|.|..+.     ..+.|...        .......+.+|+.+.|.|.+.+.|.|.++|+|+|..+. .+..+.+. 
T Consensus        82 Y~C~~~n~~~~-----~~l~V~~~--------~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~L~i~~  148 (363)
T 1wio_A           82 YICEVEDQKEE-----VQLLVFGL--------TANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQ  148 (363)
T ss_dssp             EEEEETTEEEE-----EEEEEEEE--------EESSCSSEESBSCEEEEEECCTTCCCCEEEECSSSCEEEESSEEEECS
T ss_pred             EEEEEEECCCc-----EEEEEEeC--------CCCCceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcccccceEEEEee
Confidence            99999987542     23333321        01112246689999999999999999999999876543 23445554 


Q ss_pred             -ecCCCceEEEEEEecCceEEEEEEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEec-----
Q psy16863        701 -GTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSI-----  774 (1075)
Q Consensus       701 -~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g-----  774 (1075)
                       ..+|+|.|+|.|.|..+.....+.|.|..                  +|..   +....+.+|+.+.|.|.+.+     
T Consensus       149 v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~------------------~p~~---~~~~~~~~G~~v~l~C~~~~~~~~~  207 (363)
T 1wio_A          149 LELQDSGTWTCTVLQNQKKVEFKIDIVVLA------------------FQKA---SSIVYKKEGEQVEFSFPLAFTVEKL  207 (363)
T ss_dssp             BCGGGCEECEEEEEETTEEEEECCEECEEC------------------CSCS---EEEEEEETBCCEEEECCCCCCCCSS
T ss_pred             CChhcCCEEEEEEecCCCeEEEEEEEEEec------------------CCCC---CCceEEecCCEEEEEEEEecccccC
Confidence             34799999999999887777777777763                  2221   14566889999999999888     


Q ss_pred             CCCCeEEEEECCEEeec--------CCcEEEEEe---------eCcEEEEEEccccCCCCeEEEEEEEeC--CceEEEEE
Q psy16863        775 SPEPKVSWFRDDQQVVE--------SDNVKILKE---------TLGVCHLKIHALEVADQAEWKCIATND--FGQSITSC  835 (1075)
Q Consensus       775 ~p~p~v~W~k~g~~i~~--------~~~~~~~~~---------~~~~~~L~I~~~~~~D~G~Y~C~A~N~--~G~~~~s~  835 (1075)
                      .|.|.|+|+|+|..+..        +.++.+...         ..+...|.|.+++.+|+|.|+|.|.|.  .|....++
T Consensus       208 ~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~  287 (363)
T 1wio_A          208 TGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEV  287 (363)
T ss_dssp             CEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEE
T ss_pred             CCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEE
Confidence            78899999999998876        455555331         222448999999999999999999999  99988888


Q ss_pred             EEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCCe--eEEEECCEEcCCCCeeEEEECCCCceeeEEEEEEEE
Q psy16863        836 FLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPT--LKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAH  913 (1075)
Q Consensus       836 ~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~--v~W~k~g~~l~~~~~~~i~~~~~~~~d~G~Y~C~a~  913 (1075)
                      .|.|...                 .|+.++|.|.+.|.|.|.  |+|+|||..+..+....|  ......|+|.|+|.|+
T Consensus       288 ~l~V~~v-----------------~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~~~~l~i--~~v~~~d~G~Y~C~a~  348 (363)
T 1wio_A          288 NLVVMRA-----------------TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKA--VWVLNPEAGMWQCLLS  348 (363)
T ss_dssp             EEEEEEE-----------------CCCSSSEEEEEESSCCTTCCEEEECSSSSCSEEESSSE--EEESSCCSEEEEEEEC
T ss_pred             eEEEEEe-----------------cCCCeeEEEEEccccCCCccEEEEeCCCceeeeeeeee--eeeccccceeEEEEEe
Confidence            8887621                 278899999999999998  999999998876555444  3455678999999999


Q ss_pred             eCCeeEEEEEEEEEe
Q psy16863        914 NCMGTTSSSAALLGF  928 (1075)
Q Consensus       914 N~~G~~~~~~~l~v~  928 (1075)
                      |. |....++.|.|+
T Consensus       349 ~~-~~~~~~~~~~V~  362 (363)
T 1wio_A          349 DS-GQVLLESNIKVL  362 (363)
T ss_dssp             SS-SSCCEEEEEEEC
T ss_pred             cC-CeEEEecceEec
Confidence            75 666666777664

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=3.8e-33  Score=302.47  Aligned_cols=268  Identities=26%  Similarity=0.490  Sum_probs=230.7

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      .||.|...+.+..+.+|+.++|.|.+.|.|.+.|+|+|+|..+..+.++.+...+....|.|.+++.+|+|.|+|.|.|.
T Consensus         4 ~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~   83 (284)
T 2rik_A            4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNV   83 (284)
T ss_dssp             CCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEEC
Confidence            58889888899999999999999999999999999999999999888888877777788999999999999999999999


Q ss_pred             CCceeeEEEEEeecCCCCCCCeeeeec--ceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccCCC---------EEEEE
Q psy16863        428 VGRSHCSCELSVLVPKAYKAPFFTKEL--EAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD---------IFALT  496 (1075)
Q Consensus       428 ~g~~~~s~~l~V~~~~~~~~p~~~~~~--~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~---------~~~l~  496 (1075)
                      .|....++.|.|..+|.     +....  ...+.+|+.+.|.|.+.|.|.+.+.|++++..+..+.         ...|.
T Consensus        84 ~g~~~~~~~l~V~~~p~-----~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~  158 (284)
T 2rik_A           84 AGKDSCSAQLGVQEPPR-----FIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLE  158 (284)
T ss_dssp             TEEEEEEEEEEEECCCE-----EEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEE
T ss_pred             CceEEEEEEEEccCCCc-----ccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEE
Confidence            99888888888887653     33322  2347899999999999999999999999999987654         34688


Q ss_pred             eCCCCCCCcEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEec
Q psy16863        497 ANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLV  576 (1075)
Q Consensus       497 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~  576 (1075)
                      |..+..+|+|.|+|.|.|..|....++.|.|..                    +|.+...+....+.+|+.++|.|.+.+
T Consensus       159 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~--------------------~p~~~~~~~~~~~~~g~~v~l~C~~~g  218 (284)
T 2rik_A          159 MYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE--------------------PPVFRKKPHPVETLKGADVHLECELQG  218 (284)
T ss_dssp             ECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC--------------------CCBCCSCCCCEEECTTCCEEEEEECBS
T ss_pred             ECCCCcccCEEEEEEEEcCCCceeEEEEEEEec--------------------CCcceeCCCcceecCCCeEEEEEEEEe
Confidence            999999999999999999999998888888873                    344455566678899999999999999


Q ss_pred             CCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEE
Q psy16863        577 PPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV  643 (1075)
Q Consensus       577 ~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v  643 (1075)
                      .|.| .+.|++++..+..+.++.+..++ ....|.|.++..+|+|.|+|.|.|..|.... ...|.|
T Consensus       219 ~p~~-~v~W~~~~~~~~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~-~~~l~V  282 (284)
T 2rik_A          219 TPPF-QVSWHKDKRELRSGKKYKIMSEN-FLTSIHILNVDSADIGEYQCKASNDVGSYTC-VGSITL  282 (284)
T ss_dssp             SSCC-EEEEEETTEEECBTTTEEEEEET-TEEEEEECSCCGGGCEEEEEEEEETTEEEEE-EEEEEE
T ss_pred             cCCC-EEEEEECCEECcCCCCEEEEEcC-CEEEEEEcCCCcccCEEEEEEEEeCCCceeE-EEEEEE
Confidence            9877 89999999999988888877665 3568999999999999999999999998763 334544

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=7.8e-33  Score=300.00  Aligned_cols=279  Identities=20%  Similarity=0.385  Sum_probs=240.5

Q ss_pred             CcccceeecceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCCCceeccCcEEEEecCCeEEEEEceeccCCC
Q psy16863        134 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDG  213 (1075)
Q Consensus       134 ~~p~~~~~~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~  213 (1075)
                      .||.|...+.+..+.+|++++|.|.+.+          .|.+.+.|++++..+....++.+...++...|.|.+++.+|+
T Consensus         4 ~pP~~~~~p~~~~~~~G~~v~l~C~~~g----------~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~   73 (284)
T 2rik_A            4 APPFFDLKPVSVDLALGESGTFKCHVTG----------TAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDA   73 (284)
T ss_dssp             CCCEEEECCCCEEEETTCCEEEEEEEES----------SSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCCEEEccccceEecCCCcEEEEEEEEc----------CCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccC
Confidence            3677888888999999999998887764          456789999999877777788777677778999999999999


Q ss_pred             eEEEEEEEcCceeEEEEEEEeeeccCCCCCccccccc-cceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCc
Q psy16863        214 GRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLH-DIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDH  292 (1075)
Q Consensus       214 G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~-~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~  292 (1075)
                      |.|+|.|.|..|..+..+.|.|.    .+|.+...+. ...+.+|+.+.|.|.+.+          .+.+.+.|++++..
T Consensus        74 G~Y~C~~~n~~g~~~~~~~l~V~----~~p~~~~~~~~~~~v~~g~~~~l~C~~~g----------~p~~~v~W~~~~~~  139 (284)
T 2rik_A           74 GQYTCYASNVAGKDSCSAQLGVQ----EPPRFIKKLEPSRIVKQDEHTRYECKIGG----------SPEIKVLWYKDETE  139 (284)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEE----CCCEEEECCCSEEEEETTCCEEEEEEEES----------SSCCEEEEEETTEE
T ss_pred             EEEEEEEEECCceEEEEEEEEcc----CCCcccccCCCceEecCCceEEEEEEEee----------eCCCEEEEEECCEE
Confidence            99999999999999888899887    3455555443 456889999998877653          45667889888776


Q ss_pred             cccCCCeEEEeeCCeEEEEEcccCCCCCEEEEEEEEeCCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEE
Q psy16863        293 PIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVE  372 (1075)
Q Consensus       293 ~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~  372 (1075)
                      .....++++...+....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..    +|.+...+....+.+|+.+.|.|.
T Consensus       140 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~----~p~~~~~~~~~~~~~g~~v~l~C~  215 (284)
T 2rik_A          140 IQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE----PPVFRKKPHPVETLKGADVHLECE  215 (284)
T ss_dssp             CCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC----CCBCCSCCCCEEECTTCCEEEEEE
T ss_pred             CcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEec----CCcceeCCCcceecCCCeEEEEEE
Confidence            6667778877778888999999999999999999999999988899999984    788877778888999999999999


Q ss_pred             EecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEee
Q psy16863        373 IRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL  440 (1075)
Q Consensus       373 ~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~  440 (1075)
                      +.|.|.+.|+|+|+|..+..+.++.+..++....|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus       216 ~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  283 (284)
T 2rik_A          216 LQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK  283 (284)
T ss_dssp             CBSSSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEecCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence            99999999999999999999888888888888899999999999999999999999999888888775

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=100.00  E-value=5.3e-34  Score=330.49  Aligned_cols=349  Identities=18%  Similarity=0.290  Sum_probs=245.2

Q ss_pred             eeeecCceeeccCCeEEEEEEEecCCC----cEEEEEECC--Eec------------CCCCcEEEEEcCCEEEEEEcccC
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIRSPTE----IKIHWYRND--RKL------------EENKIYRTQHDGNFYFIDLSSVS  413 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~g~p~----~~v~W~k~g--~~l------------~~~~~~~~~~~g~~~~L~I~~v~  413 (1075)
                      +...+..+.+.+|++++|.|.+.+.+.    +.|.|||++  ..+            ....++.+..++....|.|.+++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   83 (438)
T 1qgc_4            4 LTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVE   83 (438)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCc
Confidence            455677888999999999999988775    489999973  322            12357777777777889999999


Q ss_pred             CCCceeEEEEEEeCCCce-eeEEEEEeecCCCCCCCeeee-ecceEEecCCeEEEEEEEEC-CCCC-eEEEEeCCEeccC
Q psy16863        414 LFDSGRWTCLAENAVGRS-HCSCELSVLVPKAYKAPFFTK-ELEAILTEQGTVSLECKVMG-IPTP-QLIWYKDNKKIKA  489 (1075)
Q Consensus       414 ~~d~G~Y~C~a~n~~g~~-~~s~~l~V~~~~~~~~p~~~~-~~~~~~~~g~~v~l~C~~~g-~p~~-~v~W~~~g~~l~~  489 (1075)
                      .+|+|.|+|.|.|..|.. ...+.|.|....  .+|.+.. .......+|+.+.|.|.+.| .|.+ .|+|+|||.++..
T Consensus        84 ~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~--~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~  161 (438)
T 1qgc_4           84 ADDVATYYCQQSNEVPLTFGAGTKLDLKRAD--AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQN  161 (438)
T ss_dssp             GGGCEEEEEEECSSTTCCBCCCEEEEECCCC--BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred             CcCCeeEEEEEecCCCccccCceeEEecCCC--CCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCC
Confidence            999999999999987743 334667775432  2344443 22222346889999999987 6777 9999999998865


Q ss_pred             CC----------------EEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCee
Q psy16863        490 GD----------------IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIF  553 (1075)
Q Consensus       490 ~~----------------~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (1075)
                      +.                ...|.|..+..+|+|.|+|.|.|..|......  .+..                  ..++..
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~--~~~~------------------~~~~~~  221 (438)
T 1qgc_4          162 GVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVK--SFNR------------------NECEVM  221 (438)
T ss_dssp             TEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEE--EEET------------------TC-CCE
T ss_pred             CceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceec--cccc------------------ccceeE
Confidence            51                23678888888999999999999988753322  2221                  012223


Q ss_pred             eeeccceEeecCCeEEEEEEEecCC--CCceEEEEeC--CeEEe-----------------cCCcEEEEEcC-CceEEEE
Q psy16863        554 IKEVENVKAKIGTSAILECQVLVPP--WPRSIYWYNK--EGVVE-----------------ASDKYHIMADG-LGGYSIE  611 (1075)
Q Consensus       554 ~~~~~~~~v~~G~~~~L~C~~~~~p--~p~~v~W~~~--~~~i~-----------------~~~~~~~~~~~-~~~~~L~  611 (1075)
                      ...+....+.+|+.++|.|.+.+.|  .+ .+.|+++  +..+.                 ...++.+..++ .+...|.
T Consensus       222 ~~~~~~~~v~~G~~v~L~C~~~g~p~~~~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~  300 (438)
T 1qgc_4          222 LVESGGGLVKPGGSLKLSCTASGFIFNRC-AMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQ  300 (438)
T ss_dssp             EEEECCEEECTTCCEEEEEEEESSCGGGS-CEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEE
T ss_pred             EecCCceEEecCCcEEEEEEEcccccCCc-EEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEE
Confidence            3445677899999999999999987  44 8999986  43332                 13566665442 3456899


Q ss_pred             EeeeeecCCceEEEEEECCCCc----eeeeeEEEEEeCCCCcCCCceee-ccceeeecCCeEEEEEEEecC-CCC-eEEE
Q psy16863        612 INYLEAVDDGEWKCVATSSSGV----KQFSAAYVHVLMPKNYRKPRFVE-SLKAVMTDDGLVSFECKVVGF-PTP-TLQW  684 (1075)
Q Consensus       612 i~~~~~~d~G~Y~C~a~n~~g~----~~~~~~~l~v~~p~~~~~p~~~~-~~~~~~~~g~~~~l~C~v~g~-p~p-~v~W  684 (1075)
                      |.+++.+|+|.|+|.|.|..+.    .......+.|...+ ..+|.+.. .....+..|+.++|.|.+.|. |.| .++|
T Consensus       301 I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~-~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W  379 (438)
T 1qgc_4          301 MSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAK-TTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTW  379 (438)
T ss_dssp             ECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSC-CBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEE
T ss_pred             ECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCC-CCCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEE
Confidence            9999999999999999995441    11122356665422 12343332 222235578999999999997 888 9999


Q ss_pred             EECCEEcCC--------CCeE------EEeec--CCCceEEEEEEecCceEEEEEEE
Q psy16863        685 FKDNEELKP--------GDVY------QLTGT--SSLGSYCCVAKNVMGKAESSTQL  725 (1075)
Q Consensus       685 ~k~g~~l~~--------~~~~------~~~~~--~d~G~Y~C~a~N~~g~~~~~~~l  725 (1075)
                      +|+|..+..        +..|      .+...  +| |.|+|.|.|..|.......+
T Consensus       380 ~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i  435 (438)
T 1qgc_4          380 NSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI  435 (438)
T ss_dssp             GGGTCCSSEEECCCEEETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEEC
T ss_pred             ecCCCCCceeecCccccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceeeec
Confidence            999887642        1223      23332  37 99999999999987665443

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=100.00  E-value=3e-34  Score=322.91  Aligned_cols=316  Identities=17%  Similarity=0.207  Sum_probs=238.0

Q ss_pred             eeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCCCceec--------------cCcEEEEe---cCCeEEEEEc
Q psy16863        144 DIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF--------------GNRFRAIN---RDGRTELNIR  206 (1075)
Q Consensus       144 ~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~~~~~~--------------~~~~~~~~---~~~~~~L~I~  206 (1075)
                      .+.+.+|++++|.|.+.+          .+.+.+.|++++.....              ..|+.+..   .++...|.|.
T Consensus         3 ~v~~~~G~~v~L~C~~~~----------~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~   72 (363)
T 1wio_A            3 VVLGKKGDTVELTCTASQ----------KKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIK   72 (363)
T ss_dssp             EEEEETTSCEEECCCCTT----------CSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEEC
T ss_pred             eEEEeCCCeEEEEEEecC----------CCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEEC
Confidence            356788999998887653          45688999998864321              23443332   3355689999


Q ss_pred             eeccCCCeEEEEEEEcCceeEEEEEEEeeeccCCCCCccccccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEE
Q psy16863        207 RVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSF  286 (1075)
Q Consensus       207 ~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w  286 (1075)
                      +++.+|+|.|+|.|.|..+    .+.|.|.. .+       ......+.+|+.++|.|.+.+          .+.+.+.|
T Consensus        73 ~v~~~D~G~Y~C~~~n~~~----~~~l~V~~-~~-------~~~~~~v~~G~~v~l~C~~~~----------~p~~~v~W  130 (363)
T 1wio_A           73 NLKIEDSDTYICEVEDQKE----EVQLLVFG-LT-------ANSDTHLLQGQSLTLTLESPP----------GSSPSVQC  130 (363)
T ss_dssp             SCCGGGCEEEEEEETTEEE----EEEEEEEE-EE-------ESSCSSEESBSCEEEEEECCT----------TCCCCEEE
T ss_pred             CCCHHHCEEEEEEEEECCC----cEEEEEEe-CC-------CCCceEEecCCCEEEEEEcCC----------CCCCeEEE
Confidence            9999999999999998754    55666652 11       122346789999999887754          35667889


Q ss_pred             ecCCCccccCCCeEEEeeCCeEEEEEcccCCCCCEEEEEEEEeCCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCe
Q psy16863        287 RAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTR  366 (1075)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~  366 (1075)
                      +++++....          ....|.|.+++.+|+|.|+|.|.|..+.....+.+.|..    +|..   +....+.+|+.
T Consensus       131 ~~~~~~~~~----------~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~----~p~~---~~~~~~~~G~~  193 (363)
T 1wio_A          131 RSPRGKNIQ----------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA----FQKA---SSIVYKKEGEQ  193 (363)
T ss_dssp             ECSSSCEEE----------ESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEEC----CSCS---EEEEEEETBCC
T ss_pred             EcCCCcccc----------cceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEec----CCCC---CCceEEecCCE
Confidence            887654321          123799999999999999999999887777777777763    2322   14567889999


Q ss_pred             EEEEEEEec-----CCCcEEEEEECCEecCC--------CCcEEEEE----------cCCEEEEEEcccCCCCceeEEEE
Q psy16863        367 ARLLVEIRS-----PTEIKIHWYRNDRKLEE--------NKIYRTQH----------DGNFYFIDLSSVSLFDSGRWTCL  423 (1075)
Q Consensus       367 v~l~C~~~g-----~p~~~v~W~k~g~~l~~--------~~~~~~~~----------~g~~~~L~I~~v~~~d~G~Y~C~  423 (1075)
                      +.|.|.+.+     .|.+.|+|+|+|..+..        +.++.+..          .+....|.|.++..+|+|.|+|.
T Consensus       194 v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  273 (363)
T 1wio_A          194 VEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLT  273 (363)
T ss_dssp             EEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEE
T ss_pred             EEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEE
Confidence            999998877     77899999999998876        44554432          22234699999999999999999


Q ss_pred             EEeC--CCceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCCe--EEEEeCCEeccCCCEEEEEeCC
Q psy16863        424 AENA--VGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQ--LIWYKDNKKIKAGDIFALTANP  499 (1075)
Q Consensus       424 a~n~--~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~--v~W~~~g~~l~~~~~~~l~i~~  499 (1075)
                      |.|.  .|....++.|.|..                 ..|+++.|.|.+.|.|+|.  ++|+|+|+.+..+  ..|.|..
T Consensus       274 a~n~~~~g~~~~~~~l~V~~-----------------v~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~~--~~l~i~~  334 (363)
T 1wio_A          274 LALEAKTGKLHQEVNLVVMR-----------------ATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVS--KREKAVW  334 (363)
T ss_dssp             ECBTTTTCCEEEEEEEEEEE-----------------ECCCSSSEEEEEESSCCTTCCEEEECSSSSCSEE--ESSSEEE
T ss_pred             EEEhhhcCeEEEEEeEEEEE-----------------ecCCCeeEEEEEccccCCCccEEEEeCCCceeee--eeeeeee
Confidence            9999  99888777777751                 1288899999999999987  9999999988753  3456677


Q ss_pred             CCCCCcEEEEEEEEecceeeEEEEEEEEe
Q psy16863        500 KDPSSLGTYTCEAVNCMGAAFSTSRVIAR  528 (1075)
Q Consensus       500 ~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~  528 (1075)
                      +..+|+|.|+|.|.|. |....++.+.|.
T Consensus       335 v~~~d~G~Y~C~a~~~-~~~~~~~~~~V~  362 (363)
T 1wio_A          335 VLNPEAGMWQCLLSDS-GQVLLESNIKVL  362 (363)
T ss_dssp             ESSCCSEEEEEEECSS-SSCCEEEEEEEC
T ss_pred             eccccceeEEEEEecC-CeEEEecceEec
Confidence            8899999999999964 566667777663

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=100.00  E-value=7.1e-32  Score=312.56  Aligned_cols=357  Identities=17%  Similarity=0.178  Sum_probs=221.2

Q ss_pred             ccceEeecCCeEEEEEEEecCC-CCceEEEEeCC--eEEe-----------------cCCcEEEEEcC-CceEEEEEeee
Q psy16863        557 VENVKAKIGTSAILECQVLVPP-WPRSIYWYNKE--GVVE-----------------ASDKYHIMADG-LGGYSIEINYL  615 (1075)
Q Consensus       557 ~~~~~v~~G~~~~L~C~~~~~p-~p~~v~W~~~~--~~i~-----------------~~~~~~~~~~~-~~~~~L~i~~~  615 (1075)
                      +..+.+.+|+.++|.|.+.+.+ .+..+.||+++  ..+.                 ...++.+..++ .+..+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (444)
T 1igt_B            7 SGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRL   86 (444)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCC
Confidence            4556789999999999998764 12379999853  2211                 12466665442 34578999999


Q ss_pred             eecCCceEEEEEECCCCce--eeeeEEEEEeCCCCcCCCcee-eccceeeecCCeEEEEEEEecC-CCC-eEEEEECCEE
Q psy16863        616 EAVDDGEWKCVATSSSGVK--QFSAAYVHVLMPKNYRKPRFV-ESLKAVMTDDGLVSFECKVVGF-PTP-TLQWFKDNEE  690 (1075)
Q Consensus       616 ~~~d~G~Y~C~a~n~~g~~--~~~~~~l~v~~p~~~~~p~~~-~~~~~~~~~g~~~~l~C~v~g~-p~p-~v~W~k~g~~  690 (1075)
                      +.+|+|.|+|.|.|..+..  ......+.|.... ..+|.+. ......+.+|+.+.|.|.+.|. |.| .++|+|++..
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~-~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~  165 (444)
T 1igt_B           87 KSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAK-TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLS  165 (444)
T ss_dssp             CGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCC-CBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             CHHHCEEEEEEEecCCcccccccCcEEEEecCCC-CCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCCC
Confidence            9999999999999986542  1123456665321 1234333 2222234678899999999985 776 9999998875


Q ss_pred             cC--------CCCeEEE------eec--CCCceEEEEEEecCceEEEEEEEEEEeccccCchhhhhhhccCCCCCeE-Ee
Q psy16863        691 LK--------PGDVYQL------TGT--SSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKF-IE  753 (1075)
Q Consensus       691 l~--------~~~~~~~------~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~-~~  753 (1075)
                      +.        .+..|..      ...  +| |.|+|.|.|..|.......+.+.+.....-............+|.+ +.
T Consensus       166 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~  244 (444)
T 1igt_B          166 SGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIF  244 (444)
T ss_dssp             TTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEE
T ss_pred             CCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceEEec
Confidence            31        1123322      221  47 9999999999998755554433210000000000000011135654 44


Q ss_pred             ccceee-eecCCeEEEEEEEecCC----CCeEEEEECCEEeecCCcEEEEEeeC----cEEEEEEccccCCCCeEEEEEE
Q psy16863        754 GLKSCQ-ATVNEEFKFTVQVSISP----EPKVSWFRDDQQVVESDNVKILKETL----GVCHLKIHALEVADQAEWKCIA  824 (1075)
Q Consensus       754 ~~~~~~-~~~g~~~~l~C~v~g~p----~p~v~W~k~g~~i~~~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~A  824 (1075)
                      ++.... +..|+.+.|.|.+.|.|    .+.|+|+|+|..+............+    ....|.|.+++.+|+|.|+|.|
T Consensus       245 ~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a  324 (444)
T 1igt_B          245 PPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKV  324 (444)
T ss_dssp             CCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEE
T ss_pred             CCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEE
Confidence            443333 58899999999999974    36999999999886443221111111    2457999999999999999999


Q ss_pred             EeCCceEEEEEEEEEEecCCCCCCeeeeecc-eeecCCCeEEEEEEEEcc-CCC-eeEEEECCEEcCCCCe---------
Q psy16863        825 TNDFGQSITSCFLKLNVPKHYKKPKFLEELK-AVLSEGGAVNLECKVIGV-PQP-TLKWFKDGRELKAGDI---------  892 (1075)
Q Consensus       825 ~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~-~~~~~g~~~~L~C~v~g~-p~p-~v~W~k~g~~l~~~~~---------  892 (1075)
                      .|..|....+..+.+ ......+|.+..... .....++.++|.|.+.|. |.+ .|+|+|||.++.....         
T Consensus       325 ~n~~~~~~~~~~v~~-~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g  403 (444)
T 1igt_B          325 NNKDLPAPIERTISK-PKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDG  403 (444)
T ss_dssp             ECTTCSSCEEEEEEC-CCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTS
T ss_pred             EcCCCCCceEEEEec-cCCCCCCCEEEEeCCChHHccCCeEEEEEEEEeeeCCCCEEEEEECCEEccccccccceeCCCC
Confidence            999997633333322 011223454432221 112234469999999994 555 8999999998843111         


Q ss_pred             -eE----EEECCCCceeeEEEEEEEEeCC
Q psy16863        893 -HK----IISGEDGTCCLGIYTCEAHNCM  916 (1075)
Q Consensus       893 -~~----i~~~~~~~~d~G~Y~C~a~N~~  916 (1075)
                       +.    +.+......|.|.|+|.|.|..
T Consensus       404 ~~~~~s~l~i~~~~~~d~g~YtC~a~n~~  432 (444)
T 1igt_B          404 SYFMYSKLRVEKKNWVERNSYSCSVVHEG  432 (444)
T ss_dssp             CEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             CEEEEEEEEEChHHhcCCCeEEEEEECCC
Confidence             11    1111111234899999999975

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=100.00  E-value=1.2e-31  Score=296.08  Aligned_cols=292  Identities=14%  Similarity=0.254  Sum_probs=237.1

Q ss_pred             CcccceeecceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCCCceeccCcEEEEecCCeEEEEEceeccCCC
Q psy16863        134 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDG  213 (1075)
Q Consensus       134 ~~p~~~~~~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~  213 (1075)
                      .+|.|..++ +..+.+|++++|.|.+.+.         .|.+.+.|+++|..+....++.+.  ++...|.|.+++.+|+
T Consensus         6 ~~P~~~~~~-~~~v~~G~~v~l~C~~~~~---------~p~~~v~W~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~   73 (317)
T 2y25_A            6 TGPHFVEYL-SWEVTGECNVLLKCKVANI---------KKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDA   73 (317)
T ss_dssp             SCCEEEEEE-EEEEETTTEEEEEEEEESC---------CTTCEEEEEETTEEECCSCC-------CCEEEEETTCCSTTC
T ss_pred             CCCcEeeee-eEEECCCCeEEEEEEEcCC---------CCCCEEEEEECCeEcCCCCcEEEE--CCeEEEEEccCCcccC
Confidence            357777555 5899999999998887652         155789999998776656666544  4457999999999999


Q ss_pred             eEEEEEEEcCceeEEEEEEEeeeccCCCCCccccccccceeeccceeEEEEEecCCCceEEEEec-CCCeeeEEecCCCc
Q psy16863        214 GRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDL-NNTIPFSFRAQGDH  292 (1075)
Q Consensus       214 G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~-~~~~~~~w~~~~~~  292 (1075)
                      |.|+|.|.|..|.....+.|.|.    .+|.+...+....+.+|+.+.|.|...+ ..+.|.+.+ .+.+.+.|++++..
T Consensus        74 G~Y~C~~~n~~g~~~~~~~l~v~----~~~~~~~~~~~~~~~~g~~~~l~c~~~~-~~l~c~~~~~~p~~~i~W~~~~~~  148 (317)
T 2y25_A           74 GIYEVILKDDRGKDKSRLKLVDE----AFKELMMEVCKKIALSATDLKIQSTAEG-IQLYSFVTYYVEDLKVNWSHNGSA  148 (317)
T ss_dssp             SCEEEEEESSSCEEEEEECCSTH----HHHHHHHHHHHHHHTCBCCCEEEECSSE-EEEEEEBSSCCSSCEEEEEESSSB
T ss_pred             eEEEEEEECCCCcEEEEEEEEEe----cCccccccCCceecccCCCeEEEeeccc-cEEEEEeccCCCCcEEEEEECCEE
Confidence            99999999999988777666654    3455566667778889999999998754 357898876 46778889888877


Q ss_pred             cccCCCeEEEeeCCeEEEEEcccCCCCCEEEEEEEEeCCeeEEEEEEEEEec----------------CCCCCCeeeee-
Q psy16863        293 PIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES----------------QVPDAPAFIRR-  355 (1075)
Q Consensus       293 ~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~----------------~~~~~p~~~~~-  355 (1075)
                      ...+.++.+...+....|.|.+++.+|+|.|+|.|.|..|.....+.+.|..                ....+|.+... 
T Consensus       149 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  228 (317)
T 2y25_A          149 IRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGL  228 (317)
T ss_dssp             CCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBC
T ss_pred             CCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccC
Confidence            6667888888888888999999999999999999999999888887777541                12334556554 


Q ss_pred             cCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEc-CCEEEEEEcccCCCCceeEEEEEEeCCCceeeE
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHD-GNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCS  434 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~-g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s  434 (1075)
                      +....+.+|+.+.|.|.+.|.|.+.|+|+|+|..+..+.++.+... +..+.|.|.+++.+|+|.|+|.|.|..|....+
T Consensus       229 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~  308 (317)
T 2y25_A          229 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSD  308 (317)
T ss_dssp             CSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEE
T ss_pred             CccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEE
Confidence            4557899999999999999999999999999999988888887766 778899999999999999999999999999999


Q ss_pred             EEEEeecC
Q psy16863        435 CELSVLVP  442 (1075)
Q Consensus       435 ~~l~V~~~  442 (1075)
                      +.|.|.+|
T Consensus       309 ~~l~V~~P  316 (317)
T 2y25_A          309 FTVSVFIP  316 (317)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEcC
Confidence            99998865

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=4.8e-31  Score=288.84  Aligned_cols=270  Identities=25%  Similarity=0.413  Sum_probs=203.3

Q ss_pred             CCCeeeeeccceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEecCCcEEEEE-cCCceEEEEEeeeee-cCCceEEEE
Q psy16863        549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMA-DGLGGYSIEINYLEA-VDDGEWKCV  626 (1075)
Q Consensus       549 ~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~-~~~~~~~L~i~~~~~-~d~G~Y~C~  626 (1075)
                      .||.|...+.+..+.+|+.++|.|.+.+.|.| .|.|++++..+.. .++.+.. .......|.|.++.. +|+|.|+|.
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~-~i~W~k~g~~i~~-~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~   82 (304)
T 2yd9_A            5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKP-RVTWNKKGKKVNS-QRFETIEFDESAGAVLRIQPLRTPRDENVYECV   82 (304)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCC-EEEEC-------C-TTEEEEEETTTTEEEEEECSCCTTTTCSEEEEE
T ss_pred             cCCeeeecCCceEecCCCeEEEEEEEEEeCCC-eEEEEECCEECCC-CceEEEEecCCCceEEEEecccccCCCeEEEEE
Confidence            47888888999999999999999999999877 8999999988754 3444433 322347899999998 999999999


Q ss_pred             EECCCCceeeeeEEEEEeCCCCc--CCCceeeccc-eeeecCCeEEEEEEEecCCCCeEEEEECCEEcCCC---------
Q psy16863        627 ATSSSGVKQFSAAYVHVLMPKNY--RKPRFVESLK-AVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPG---------  694 (1075)
Q Consensus       627 a~n~~g~~~~~~~~l~v~~p~~~--~~p~~~~~~~-~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~l~~~---------  694 (1075)
                      |.|..|... ....|.|..++..  ..|.+..... ..+..|+.+.|.|.+.|.|.|.++|+|++..+..+         
T Consensus        83 a~n~~g~~~-~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~  161 (304)
T 2yd9_A           83 AQNSVGEIT-VHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQL  161 (304)
T ss_dssp             EECSSCEEC-CEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEEC
T ss_pred             EECCCCeEE-EEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeC
Confidence            999998854 4456777654321  1245544433 34667889999999999999999999999887543         


Q ss_pred             --CeEEEe--ecCCCceEEEEEEecCceEEEE-EEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEE
Q psy16863        695 --DVYQLT--GTSSLGSYCCVAKNVMGKAESS-TQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFT  769 (1075)
Q Consensus       695 --~~~~~~--~~~d~G~Y~C~a~N~~g~~~~~-~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~  769 (1075)
                        ..+.+.  ..+|+|.|+|.|.|..|..... +.|.|...               ..+|.|...+....+..|+.+.|.
T Consensus       162 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~---------------~~~P~~~~~~~~~~v~~G~~v~l~  226 (304)
T 2yd9_A          162 RSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQ---------------NVAPRFSILPMSHEIMPGGNVNIT  226 (304)
T ss_dssp             TTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECC---------------CEEEEEEECCCCBCCCTTCCEEEE
T ss_pred             CCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEee---------------ccCCcEEecCCceEEcCCCeEEEE
Confidence              123343  3378999999999999987654 56666531               147788877777889999999999


Q ss_pred             EEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEecC
Q psy16863        770 VQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPK  843 (1075)
Q Consensus       770 C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~  843 (1075)
                      |.+.|.|.|.|+|+|+|..+....++.     .+...|.|.++  +|+|.|+|.|.|.+|....++.|.|..++
T Consensus       227 C~~~g~p~p~v~W~~~~~~l~~~~~~~-----~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~  293 (304)
T 2yd9_A          227 CVAVGSPMPYVKWMQGAEDLTPEDDMP-----VGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLP  293 (304)
T ss_dssp             EEEEEESCCEEEEEETTEECSCSSSCC-----BSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC-----
T ss_pred             EEEeeeCCCEEEEEECCEECCCccccc-----CCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecCc
Confidence            999999999999999999997765432     34557888776  69999999999999999999999998654

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=4e-31  Score=289.47  Aligned_cols=273  Identities=22%  Similarity=0.395  Sum_probs=209.4

Q ss_pred             CCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEE--EcCCEEEEEEcccCC-CCceeEEEE
Q psy16863        347 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQ--HDGNFYFIDLSSVSL-FDSGRWTCL  423 (1075)
Q Consensus       347 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~--~~g~~~~L~I~~v~~-~d~G~Y~C~  423 (1075)
                      ..+|.|...+.+..+.+|++++|.|.+.|.|.+.|+|+|+|..+... ++.+.  .++....|.|.++.. +|+|.|+|.
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~-~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~   82 (304)
T 2yd9_A            4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDESAGAVLRIQPLRTPRDENVYECV   82 (304)
T ss_dssp             CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CT-TEEEEEETTTTEEEEEECSCCTTTTCSEEEEE
T ss_pred             ccCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCC-ceEEEEecCCCceEEEEecccccCCCeEEEEE
Confidence            35899999999999999999999999999999999999999988654 33333  345567899999998 999999999


Q ss_pred             EEeCCCceeeEEEEEeecCCCCC--CCeeeeecce-EEecCCeEEEEEEEECCCCCeEEEEeCCEeccCCC---------
Q psy16863        424 AENAVGRSHCSCELSVLVPKAYK--APFFTKELEA-ILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD---------  491 (1075)
Q Consensus       424 a~n~~g~~~~s~~l~V~~~~~~~--~p~~~~~~~~-~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~---------  491 (1075)
                      |.|..|....++.|.|..++...  .|.+...+.. .+.+|+.+.|.|.+.|.|.+.++|+|+|..+....         
T Consensus        83 a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~  162 (304)
T 2yd9_A           83 AQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLR  162 (304)
T ss_dssp             EECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEECT
T ss_pred             EECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeCC
Confidence            99999998888999998764321  2455544443 47889999999999999999999999999886431         


Q ss_pred             EEEEEeCCCCCCCcEEEEEEEEecceeeEEE-EEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEE
Q psy16863        492 IFALTANPKDPSSLGTYTCEAVNCMGAAFST-SRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAIL  570 (1075)
Q Consensus       492 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L  570 (1075)
                      ...|.|..+..+|+|.|+|.|.|..|..... +.+.|...                 ..+|.+...+....+.+|+.++|
T Consensus       163 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~-----------------~~~P~~~~~~~~~~v~~G~~v~l  225 (304)
T 2yd9_A          163 SGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQ-----------------NVAPRFSILPMSHEIMPGGNVNI  225 (304)
T ss_dssp             TSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECC-----------------CEEEEEEECCCCBCCCTTCCEEE
T ss_pred             CeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEee-----------------ccCCcEEecCCceEEcCCCeEEE
Confidence            1268999999999999999999999987644 55665411                 13466666667778999999999


Q ss_pred             EEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEEeCC
Q psy16863        571 ECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP  646 (1075)
Q Consensus       571 ~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~p  646 (1075)
                      .|.+.+.|.| .+.|++++..+....++.     .+...|.|.++  +|+|.|+|.|.|..|.... ...|.|..+
T Consensus       226 ~C~~~g~p~p-~v~W~~~~~~l~~~~~~~-----~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~-~~~l~V~~~  292 (304)
T 2yd9_A          226 TCVAVGSPMP-YVKWMQGAEDLTPEDDMP-----VGRNVLELTDV--KDSANYTCVAMSSLGVIEA-VAQITVKSL  292 (304)
T ss_dssp             EEEEEEESCC-EEEEEETTEECSCSSSCC-----BSEEEEEECSC--CSCEEEEEEEEETTEEEEE-EEEEC----
T ss_pred             EEEEeeeCCC-EEEEEECCEECCCccccc-----CCcEEEEEccc--ccCEEEEEEEEeCCCcEEE-EEEEEEecC
Confidence            9999999988 899999999887655432     23456777766  6999999999999998763 456666554

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.98  E-value=1.8e-31  Score=309.18  Aligned_cols=360  Identities=14%  Similarity=0.123  Sum_probs=232.4

Q ss_pred             ccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCC-Cc-c-----------------ccCCCeEEEee--CC
Q psy16863        248 RLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG-DH-P-----------------IFGNRFRAINR--DG  306 (1075)
Q Consensus       248 ~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~-~~-~-----------------~~~~~~~~~~~--~~  306 (1075)
                      .+..+.+.+|+.++|.|.+.+...        +...+.|++.+ +. +                 ....|+.+..+  ++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~--------~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   77 (444)
T 1igt_B            6 ESGGGLVQPGGSLKLSCATSGFTF--------SDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKN   77 (444)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCG--------GGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTT
T ss_pred             cCCCeEEcCCCCEEEEEEcCCCcc--------CCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCC
Confidence            345567899999999999864310        12234444321 11 0                 01357776654  35


Q ss_pred             eEEEEEcccCCCCCEEEEEEEEeCCee---EEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecC-CCc-EE
Q psy16863        307 RTELNIRRVRRDDGGRYSVTASNESGY---STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSP-TEI-KI  381 (1075)
Q Consensus       307 ~~~L~I~~~~~~d~G~Y~C~a~n~~g~---~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p~~-~v  381 (1075)
                      ..+|.|.+++.+|+|.|+|.|.|..+.   ....+.|.|......+|.+........+.+|+.++|.|.+.|. |.+ .|
T Consensus        78 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v  157 (444)
T 1igt_B           78 TLYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTL  157 (444)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEE
T ss_pred             eEEEEECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEE
Confidence            679999999999999999999997543   2234577776433445666544444456899999999999874 665 99


Q ss_pred             EEEECCEecCCCCcEEEEEcCC---EEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeecC-------------CCC
Q psy16863        382 HWYRNDRKLEENKIYRTQHDGN---FYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP-------------KAY  445 (1075)
Q Consensus       382 ~W~k~g~~l~~~~~~~~~~~g~---~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~-------------~~~  445 (1075)
                      +|+|+|..+...........+.   ...|.|.++..+| |.|+|.|.|..|.......+.+..+             ...
T Consensus       158 ~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  236 (444)
T 1igt_B          158 TWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLL  236 (444)
T ss_dssp             EEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCC
T ss_pred             EEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccC
Confidence            9999997642110000111122   1358999999899 9999999999998755555543210             111


Q ss_pred             CCCee-eeecceE--EecCCeEEEEEEEECCC---C-CeEEEEeCCEeccCCC--------------EEEEEeCCCCCCC
Q psy16863        446 KAPFF-TKELEAI--LTEQGTVSLECKVMGIP---T-PQLIWYKDNKKIKAGD--------------IFALTANPKDPSS  504 (1075)
Q Consensus       446 ~~p~~-~~~~~~~--~~~g~~v~l~C~~~g~p---~-~~v~W~~~g~~l~~~~--------------~~~l~i~~~~~~d  504 (1075)
                      .+|.+ ..++...  +.+|+.+.|.|.+.|.|   + +.|+|+|+|..+....              ...|.|..+..+|
T Consensus       237 ~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d  316 (444)
T 1igt_B          237 GGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMS  316 (444)
T ss_dssp             CCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHT
T ss_pred             CCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhcc
Confidence            23443 3333222  47899999999999874   3 5999999998875321              2368898889999


Q ss_pred             cEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeee-eccceEeecCCeEEEEEEEec-CCCCce
Q psy16863        505 LGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIK-EVENVKAKIGTSAILECQVLV-PPWPRS  582 (1075)
Q Consensus       505 ~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~G~~~~L~C~~~~-~p~p~~  582 (1075)
                      +|.|+|.|.|..|.......+.+..               .. ..+|.+.. .+....+..| .++|.|.+.+ .|.+..
T Consensus       317 ~G~Y~C~a~n~~~~~~~~~~v~~~~---------------~~-~~~P~v~~~~~~~~~~~~~-~~~L~C~~~g~~P~~~~  379 (444)
T 1igt_B          317 GKEFKCKVNNKDLPAPIERTISKPK---------------GS-VRAPQVYVLPPPEEEMTKK-QVTLTCMVTDFMPEDIY  379 (444)
T ss_dssp             TCEEEEEEECTTCSSCEEEEEECCC---------------CC-CBCCEEEEECCCGGGTTSS-EEEEEEEEEEEBSSCCE
T ss_pred             CCcEEEEEEcCCCCCceEEEEeccC---------------CC-CCCCEEEEeCCChHHccCC-eEEEEEEEEeeeCCCCE
Confidence            9999999999988764333332210               01 12344332 2222223344 5999999998 555558


Q ss_pred             EEEEeCCeEEecCCcEEEEEcCCceE----EEEEeeeeecCCceEEEEEECCCCc
Q psy16863        583 IYWYNKEGVVEASDKYHIMADGLGGY----SIEINYLEAVDDGEWKCVATSSSGV  633 (1075)
Q Consensus       583 v~W~~~~~~i~~~~~~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~g~  633 (1075)
                      |.|+++|..+...........+.+.+    .|.|.....+|+|.|+|.|.|....
T Consensus       380 v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~l~  434 (444)
T 1igt_B          380 VEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGLH  434 (444)
T ss_dssp             EEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTSG
T ss_pred             EEEEECCEEccccccccceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCCcC
Confidence            99999998874221111111222222    4667767777899999999998643

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.98  E-value=7.3e-32  Score=297.65  Aligned_cols=263  Identities=22%  Similarity=0.302  Sum_probs=201.7

Q ss_pred             cCCCceeeccceeeecCCeEEEEEEEecC-CCCeEEEEECCEEcCCCCeEEEe-----------ecCCCceEEEEEEecC
Q psy16863        649 YRKPRFVESLKAVMTDDGLVSFECKVVGF-PTPTLQWFKDNEELKPGDVYQLT-----------GTSSLGSYCCVAKNVM  716 (1075)
Q Consensus       649 ~~~p~~~~~~~~~~~~g~~~~l~C~v~g~-p~p~v~W~k~g~~l~~~~~~~~~-----------~~~d~G~Y~C~a~N~~  716 (1075)
                      +.+|.|.......+.+|+.+.|.|.+.+. |.+.++|+|+|..+..+.++.+.           ..+|+|.|+|.|.|..
T Consensus         5 ~~~P~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~   84 (317)
T 2y25_A            5 FTGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDR   84 (317)
T ss_dssp             SSCCEEEEEEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESSS
T ss_pred             cCCCcEeeeeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECCC
Confidence            45678887776668899999999999987 78999999999999866544322           3479999999999999


Q ss_pred             ceEEEEEEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEec----------CCCCeEEEEECC
Q psy16863        717 GKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSI----------SPEPKVSWFRDD  786 (1075)
Q Consensus       717 g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g----------~p~p~v~W~k~g  786 (1075)
                      |....++.|.|..                  +|.+...+....+..|+.+.|.|.+.+          .|.+.++|+|+|
T Consensus        85 g~~~~~~~l~v~~------------------~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~  146 (317)
T 2y25_A           85 GKDKSRLKLVDEA------------------FKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNG  146 (317)
T ss_dssp             CEEEEEECCSTHH------------------HHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESS
T ss_pred             CcEEEEEEEEEec------------------CccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECC
Confidence            9887776665543                  222222223334455666666666655          789999999999


Q ss_pred             EEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEec---------------CCCCCCeee
Q psy16863        787 QQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP---------------KHYKKPKFL  851 (1075)
Q Consensus       787 ~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~---------------~~~~~p~~~  851 (1075)
                      ..+..+.++.+... .+...|.|.+++.+|+|.|+|.|.|..|....++.|.|...               .....|.+.
T Consensus       147 ~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~  225 (317)
T 2y25_A          147 SAIRYSDRVKTGVT-GEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVL  225 (317)
T ss_dssp             SBCCCCSSEEEEEC-SSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEE
T ss_pred             EECCCCCCeEEecc-CCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCccc
Confidence            99988888877644 45678999999999999999999999999888777765420               111234454


Q ss_pred             eecc--eeecCCCeEEEEEEEEccCCCeeEEEECCEEcCCCCe----------eEEEECCCCceeeEEEEEEEEeCCeeE
Q psy16863        852 EELK--AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDI----------HKIISGEDGTCCLGIYTCEAHNCMGTT  919 (1075)
Q Consensus       852 ~~~~--~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~----------~~i~~~~~~~~d~G~Y~C~a~N~~G~~  919 (1075)
                      ..+.  ..+.+|+.++|.|.+.|.|.|.|+|+|||.++..+.+          ..|.+......|+|.|+|.|.|.+|..
T Consensus       226 ~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  305 (317)
T 2y25_A          226 GGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSE  305 (317)
T ss_dssp             EBCCSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEE
T ss_pred             ccCCccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeE
Confidence            4332  2477999999999999999999999999998875433          366667777789999999999999999


Q ss_pred             EEEEEEEEecC
Q psy16863        920 SSSAALLGFED  930 (1075)
Q Consensus       920 ~~~~~l~v~~~  930 (1075)
                      +.++.|.|..|
T Consensus       306 ~~~~~l~V~~P  316 (317)
T 2y25_A          306 TSDFTVSVFIP  316 (317)
T ss_dssp             EEEEEEEEECC
T ss_pred             EEEEEEEEEcC
Confidence            99999998744

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.97  E-value=4.8e-30  Score=279.17  Aligned_cols=266  Identities=18%  Similarity=0.316  Sum_probs=202.8

Q ss_pred             CCeeeeeccceEeecCCeEEEEEEEecCCCCceEEEEe-CCeEEec-CCcEEEEEcCCceEEEEEeeeeecCCceEEEEE
Q psy16863        550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYN-KEGVVEA-SDKYHIMADGLGGYSIEINYLEAVDDGEWKCVA  627 (1075)
Q Consensus       550 ~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~-~~~~i~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  627 (1075)
                      |+.+...+.+..+.+|+.++|.|.+.+.+.+..+.|++ ++..+.. ..++.+...+.....|.|.+++.+|+|.|+|.|
T Consensus         2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~   81 (291)
T 1qz1_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (291)
T ss_dssp             CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEE
Confidence            45566778888999999999999999887434899999 6666653 345555544445679999999999999999999


Q ss_pred             ECCCCceeeeeEEEEEeCCCCcCCCceeecc-ceeeecCCeEEEEEEEecCCCCeEEEEECCEEcCCC----------Ce
Q psy16863        628 TSSSGVKQFSAAYVHVLMPKNYRKPRFVESL-KAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPG----------DV  696 (1075)
Q Consensus       628 ~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~-~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~l~~~----------~~  696 (1075)
                      .|..|........+.|..+     |.+.... ...+.+|+.+.|.|.+.|.|.|.++|+|++..+...          ..
T Consensus        82 ~n~~g~~~~~~~~l~v~~~-----~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~  156 (291)
T 1qz1_A           82 TAEDGTQSEATVNVKIFQK-----LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY  156 (291)
T ss_dssp             ECTTSCEEEEEEEEEEECC-----SEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTSC
T ss_pred             EcCCCCeeEEEEEEEeecc-----ccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCCc
Confidence            9998765444455666544     3343333 234678999999999999999999999999877532          22


Q ss_pred             EEEe--ecCCCceEEEEEEecCceEE--EEEEEEEEeccccCchhhhhhhccCCCCCeEEecc--ceeeeecCCeEEEEE
Q psy16863        697 YQLT--GTSSLGSYCCVAKNVMGKAE--SSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGL--KSCQATVNEEFKFTV  770 (1075)
Q Consensus       697 ~~~~--~~~d~G~Y~C~a~N~~g~~~--~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~g~~~~l~C  770 (1075)
                      +.+.  ..+|.|.|+|.|.|..+...  ..+.|.|..                  +|.+....  ....+..|+.+.|.|
T Consensus       157 L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~------------------~p~~~~~~~~~~~~~~~g~~v~l~C  218 (291)
T 1qz1_A          157 LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNV------------------PPTVQARQSIVNATANLGQSVTLVC  218 (291)
T ss_dssp             EEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEE------------------EEEEEESCSEEEEETTSCCCEEEEE
T ss_pred             EEEccCccccCeEEEEEEEecCCCceeeEEEEEEEec------------------CCcccccccccccccccCceEEEEE
Confidence            3332  34789999999999875433  345666653                  55555432  356788999999999


Q ss_pred             EEecCCCCeEEEEECCEEeecCC----cEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEe
Q psy16863        771 QVSISPEPKVSWFRDDQQVVESD----NVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV  841 (1075)
Q Consensus       771 ~v~g~p~p~v~W~k~g~~i~~~~----~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~  841 (1075)
                      .+.|.|.|.++|+|+|.++..+.    ++.+.  . ....|.|.+++.+|+|.|+|.|.|.+|....++.|.|..
T Consensus       219 ~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~--~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  290 (291)
T 1qz1_A          219 DADGFPEPTMSWTKDGEPIENEEEDDEKHIFS--D-DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA  290 (291)
T ss_dssp             EEEEESCCEEEEEETTEECCCC--CCSSEEEC--T-TSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEeCCCcEEEEECCEECcCCCCCCcceEEc--C-CCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence            99999999999999999997664    34332  2 234799999999999999999999999998899888864

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.97  E-value=9.4e-31  Score=304.24  Aligned_cols=355  Identities=15%  Similarity=0.179  Sum_probs=215.2

Q ss_pred             ccceEeecCCeEEEEEEEecCC--CCceEEEEeCC--eE---Ee--------------cCCcEEEEEcC-CceEEEEEee
Q psy16863        557 VENVKAKIGTSAILECQVLVPP--WPRSIYWYNKE--GV---VE--------------ASDKYHIMADG-LGGYSIEINY  614 (1075)
Q Consensus       557 ~~~~~v~~G~~~~L~C~~~~~p--~p~~v~W~~~~--~~---i~--------------~~~~~~~~~~~-~~~~~L~i~~  614 (1075)
                      +..+.+.+|+.++|.|.+.+.+  .+ .+.||+..  ..   +.              ...++.+..++ .+...|.|.+
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (457)
T 1hzh_H            7 SGAEVKKPGASVKVSCQASGYRFSNF-VIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS   85 (457)
T ss_dssp             CCCEEECTTCCEEECEEEESSCGGGS-CEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CCceEEcCCCCEEEEEEecCccccCc-EEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECC
Confidence            4456789999999999999875  44 79999842  21   10              13466665542 2457899999


Q ss_pred             eeecCCceEEEEEECCCCc-----------eeeeeEEEEEeCCCCcCCCceee-ccceeeecCCeEEEEEEEecC-CC-C
Q psy16863        615 LEAVDDGEWKCVATSSSGV-----------KQFSAAYVHVLMPKNYRKPRFVE-SLKAVMTDDGLVSFECKVVGF-PT-P  680 (1075)
Q Consensus       615 ~~~~d~G~Y~C~a~n~~g~-----------~~~~~~~l~v~~p~~~~~p~~~~-~~~~~~~~g~~~~l~C~v~g~-p~-p  680 (1075)
                      ++.+|+|.|+|.|.|..|.           .......+.|.... ..+|.+.. .....+.+|+.+.|.|.+.|. |. +
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~-~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~  164 (457)
T 1hzh_H           86 LRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSAS-TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV  164 (457)
T ss_dssp             CCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCC-CBCCEEEEECCCSCCCTTCCEEEEEEEESBBSCCC
T ss_pred             CCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCC-CCCCeEEecCccccccCCCcEEEEEEEeEEeCCCe
Confidence            9999999999999998751           11123456665422 12344332 222335678899999999987 75 7


Q ss_pred             eEEEEECCEEcC---------CCCeE------EEee--cCCCceEEEEEEecCceEEEEEEEEEEeccccCchhhhhhhc
Q psy16863        681 TLQWFKDNEELK---------PGDVY------QLTG--TSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLL  743 (1075)
Q Consensus       681 ~v~W~k~g~~l~---------~~~~~------~~~~--~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~~~~~~~~~~  743 (1075)
                      .++|+|++..+.         .+..|      .+..  .+| |.|+|.|.|..+.......+.+........-.... ..
T Consensus       165 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~-~~  242 (457)
T 1hzh_H          165 TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCP-AP  242 (457)
T ss_dssp             EEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCC-CC
T ss_pred             EEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCCCC-Cc
Confidence            999999985432         23333      2222  256 99999999998876655554433210000000000 00


Q ss_pred             cCCCCCeE-Eeccceee-eecCCeEEEEEEEecCCCC----eEEEEECCEEeecCCcEEEEEeeCcE----EEEEEcccc
Q psy16863        744 TNNKAPKF-IEGLKSCQ-ATVNEEFKFTVQVSISPEP----KVSWFRDDQQVVESDNVKILKETLGV----CHLKIHALE  813 (1075)
Q Consensus       744 ~~~~~p~~-~~~~~~~~-~~~g~~~~l~C~v~g~p~p----~v~W~k~g~~i~~~~~~~~~~~~~~~----~~L~I~~~~  813 (1075)
                      ....+|.+ +..+.... +.+|+.+.|.|.+.|.|++    .|+|+|+|.++............++.    ..|.|....
T Consensus       243 ~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d  322 (457)
T 1hzh_H          243 ELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQD  322 (457)
T ss_dssp             CCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHH
T ss_pred             cccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECHHH
Confidence            01124554 44433322 6789999999999998653    99999999988643222222222232    123333444


Q ss_pred             CCCCeEEEEEEEeCCceEEEEEEEEEEecCCCCCCeeeeec-ce-eecCCCeEEEEEEEEccCCC--eeEEEECCEEcCC
Q psy16863        814 VADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEEL-KA-VLSEGGAVNLECKVIGVPQP--TLKWFKDGRELKA  889 (1075)
Q Consensus       814 ~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~-~~-~~~~g~~~~L~C~v~g~p~p--~v~W~k~g~~l~~  889 (1075)
                      .+|+|.|+|.|.|..+....+..+.+. .....+|.+.... .. .+..|+ ++|.|.+.|.|+|  .|+|+|||.+|..
T Consensus       323 ~~d~G~Y~C~a~n~~~~~~~~~~v~~~-~~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~  400 (457)
T 1hzh_H          323 WLNGKEYKCKVSNKALPAPIEKTISKA-KGQPREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENN  400 (457)
T ss_dssp             HHHTCCEEEEEECTTSSSCEEEEECCC-CCCCBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECCC
T ss_pred             ccCCCcEEEEEeCCCCCCcceEEEEcc-cCCCCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECcc
Confidence            455999999999987665333333221 1112345443222 11 233444 9999999997554  8999999999864


Q ss_pred             CCeeEEEECCCC--------------ceeeEEEEEEEEeCCe
Q psy16863        890 GDIHKIISGEDG--------------TCCLGIYTCEAHNCMG  917 (1075)
Q Consensus       890 ~~~~~i~~~~~~--------------~~d~G~Y~C~a~N~~G  917 (1075)
                      +....+....++              ..|.|.|+|.|.|..-
T Consensus       401 ~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l  442 (457)
T 1hzh_H          401 YKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  442 (457)
T ss_dssp             EEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             eeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECCC
Confidence            321111111111              1357999999999754

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.97  E-value=1.5e-30  Score=302.56  Aligned_cols=359  Identities=12%  Similarity=0.124  Sum_probs=226.5

Q ss_pred             cccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCC---------------Ccc----ccCCCeEEEee--CCe
Q psy16863        249 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG---------------DHP----IFGNRFRAINR--DGR  307 (1075)
Q Consensus       249 ~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~---------------~~~----~~~~~~~~~~~--~~~  307 (1075)
                      +..+.+.+|+.++|.|.+.+.+.        ....+.|++.+               ...    ....|+.+..+  ++.
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~--------~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   78 (457)
T 1hzh_H            7 SGAEVKKPGASVKVSCQASGYRF--------SNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT   78 (457)
T ss_dssp             CCCEEECTTCCEEECEEEESSCG--------GGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE
T ss_pred             CCceEEcCCCCEEEEEEecCccc--------cCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCE
Confidence            34567889999999999875320        02233443321               000    01356776654  456


Q ss_pred             EEEEEcccCCCCCEEEEEEEEeCCe------------eEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEec
Q psy16863        308 TELNIRRVRRDDGGRYSVTASNESG------------YSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS  375 (1075)
Q Consensus       308 ~~L~I~~~~~~d~G~Y~C~a~n~~g------------~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g  375 (1075)
                      .+|.|.+++.+|+|.|+|.|.|..|            .....+.|.|......+|.+........+.+|+.++|.|.+.|
T Consensus        79 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g  158 (457)
T 1hzh_H           79 AYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKD  158 (457)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEES
T ss_pred             EEEEECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeE
Confidence            7999999999999999999999765            2234567777654444676655555556789999999999988


Q ss_pred             C-CC-cEEEEEECCEecCCCCcEEEE-EcCCE---EEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeecCC------
Q psy16863        376 P-TE-IKIHWYRNDRKLEENKIYRTQ-HDGNF---YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPK------  443 (1075)
Q Consensus       376 ~-p~-~~v~W~k~g~~l~~~~~~~~~-~~g~~---~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~------  443 (1075)
                      . |. +.|+|+|+|..+......... .++..   ..|.|.++..+| |.|+|.|.|..+.......+.+...+      
T Consensus       159 ~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~  237 (457)
T 1hzh_H          159 YFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCP  237 (457)
T ss_dssp             BBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCC
T ss_pred             EeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccC
Confidence            6 64 899999999765321111111 22322   368999999999 99999999988776555555443211      


Q ss_pred             ------CCCCCee-eeecce-E-EecCCeEEEEEEEECCCCC----eEEEEeCCEeccCCC----------EEEEE-eCC
Q psy16863        444 ------AYKAPFF-TKELEA-I-LTEQGTVSLECKVMGIPTP----QLIWYKDNKKIKAGD----------IFALT-ANP  499 (1075)
Q Consensus       444 ------~~~~p~~-~~~~~~-~-~~~g~~v~l~C~~~g~p~~----~v~W~~~g~~l~~~~----------~~~l~-i~~  499 (1075)
                            ...+|.+ ..++.. . +.+|+.+.|.|.+.|.|++    .|+|+|+|.++....          .+.+. ...
T Consensus       238 ~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~  317 (457)
T 1hzh_H          238 PCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLT  317 (457)
T ss_dssp             SCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEEC
T ss_pred             CCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEE
Confidence                  1123443 332222 1 5679999999999998653    999999998875332          11111 111


Q ss_pred             CCCCC---cEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeee-eeccceEeecCCeEEEEEEEe
Q psy16863        500 KDPSS---LGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFI-KEVENVKAKIGTSAILECQVL  575 (1075)
Q Consensus       500 ~~~~d---~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~G~~~~L~C~~~  575 (1075)
                      +...|   +|.|+|.|.|..+.......+.+.               .... .+|.+. ..+....+..|+ ++|.|.+.
T Consensus       318 i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~---------------~~~~-~~P~v~~~~~~~~~~~~~~-~~l~C~~~  380 (457)
T 1hzh_H          318 VLHQDWLNGKEYKCKVSNKALPAPIEKTISKA---------------KGQP-REPQVYTLPPSRDELTKNQ-VSLTCLVK  380 (457)
T ss_dssp             CCHHHHHHTCCEEEEEECTTSSSCEEEEECCC---------------CCCC-BCCEEEEECCCGGGGGSSE-EEEEEEEE
T ss_pred             ECHHHccCCCcEEEEEeCCCCCCcceEEEEcc---------------cCCC-CCCeEEEECCCccccCCCc-EEEEEEEE
Confidence            23444   999999999876654333333221               0011 233333 333333344555 99999999


Q ss_pred             cCCCC-ceEEEEeCCeEEecCCcEEEEEcCCceE----EEEEeeeeecCCceEEEEEECCCCc
Q psy16863        576 VPPWP-RSIYWYNKEGVVEASDKYHIMADGLGGY----SIEINYLEAVDDGEWKCVATSSSGV  633 (1075)
Q Consensus       576 ~~p~p-~~v~W~~~~~~i~~~~~~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~g~  633 (1075)
                      +.++| ..|.|+++|..+..........++.+.+    .|.|.....+|+|.|+|.|.|....
T Consensus       381 g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  443 (457)
T 1hzh_H          381 GFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  443 (457)
T ss_dssp             EEBSSCCEEEEEETTEECCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             eEECCCCEEEEEECCEECcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECCCC
Confidence            86433 4899999998875332222222222222    3556666667899999999998654

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.97  E-value=7.2e-30  Score=277.74  Aligned_cols=269  Identities=17%  Similarity=0.274  Sum_probs=210.8

Q ss_pred             CCCccccccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCcccc-CCCeEEEeeCCeEEEEEcccCCCC
Q psy16863        241 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF-GNRFRAINRDGRTELNIRRVRRDD  319 (1075)
Q Consensus       241 ~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~L~I~~~~~~d  319 (1075)
                      .+|.+...+.+..+.+|+.++|.|.+.+          .+ ..+.|++.++..+. +.++.+..++...+|.|.+++.+|
T Consensus         3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~----------~p-~~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   71 (291)
T 2wim_A            3 ALLQVTISLSKVELSVGESKFFTCTAIG----------EP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIED   71 (291)
T ss_dssp             CCCEEEESCSEEEEETTCCEEEEEEEES----------CC-SEEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGG
T ss_pred             CCceEEEeccceEecCCCcEEEEEEEeC----------CC-CceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCccc
Confidence            3577788888999999999999888764          23 37889885555544 778888888888899999999999


Q ss_pred             CEEEEEEEEeCCeeE-EEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCC--CCcE
Q psy16863        320 GGRYSVTASNESGYS-TAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEE--NKIY  396 (1075)
Q Consensus       320 ~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~--~~~~  396 (1075)
                      +|.|+|.|.|..|.. +..+.|.|..    +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|+|++..+..  ..++
T Consensus        72 ~G~Y~C~~~n~~g~~~~~~~~l~v~~----~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~  147 (291)
T 2wim_A           72 AGIYRCQATDAKGQTQEATVVLEIYQ----KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRF  147 (291)
T ss_dssp             CEEEEEEEECSSSCEEEEEEEEEEEC----CCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSE
T ss_pred             CEEEEEEEecccCceEEEEEEEEecC----CcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceE
Confidence            999999999988864 4566777763    67777677788899999999999999999999999999988764  3455


Q ss_pred             EEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCcee--eEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCC
Q psy16863        397 RTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSH--CSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIP  474 (1075)
Q Consensus       397 ~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~--~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p  474 (1075)
                      .+..++   .|.|.+++.+|+|.|+|.|.|..+...  ....+.|..+|.+..+..  .....+.+|+.+.|.|.+.|.|
T Consensus       148 ~~~~~~---~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~--~~~~~~~~g~~~~l~C~~~g~p  222 (291)
T 2wim_A          148 AMLANN---NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQK--SFNATAERGEEMTFSCRASGSP  222 (291)
T ss_dssp             EECTTS---CEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCS--EEECCSSSCCEEEEECBCCCBS
T ss_pred             EEccCC---CEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcc--cccceecCCCeEEEEEEeecCC
Confidence            444444   389999999999999999999886543  345566666554322110  0122367899999999999999


Q ss_pred             CCeEEEEeCCEeccCCCE-------EEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEec
Q psy16863        475 TPQLIWYKDNKKIKAGDI-------FALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARG  529 (1075)
Q Consensus       475 ~~~v~W~~~g~~l~~~~~-------~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~  529 (1075)
                      .+.++|+++|..+..+.+       ..|.|..+..+|+|.|+|.|.|..|...+++.+.|.+
T Consensus       223 ~p~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~  284 (291)
T 2wim_A          223 EPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV  284 (291)
T ss_dssp             CCEEEEEETTEECCCTTTEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC--
T ss_pred             CCeEEEEECCEECcCCccEEEcCCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEE
Confidence            999999999999875433       3688999999999999999999999999999999874

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.97  E-value=1e-29  Score=276.48  Aligned_cols=266  Identities=18%  Similarity=0.265  Sum_probs=209.5

Q ss_pred             CCccccccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCcccc--CCCeEEEe-eCCeEEEEEcccCCC
Q psy16863        242 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF--GNRFRAIN-RDGRTELNIRRVRRD  318 (1075)
Q Consensus       242 ~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~-~~~~~~L~I~~~~~~  318 (1075)
                      ++.+...+.+..+.+|+.++|.|.+.+.+         +...+.|++.++..+.  ..++.+.. .+....|.|.+++.+
T Consensus         2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~---------~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   72 (291)
T 1qz1_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDA---------KDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANID   72 (291)
T ss_dssp             CCCEEEESSSEEEETTCCEEEEEEESSCC---------SCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGG
T ss_pred             CcceEecCCCceEeCCCeEEEEEEeCCCC---------CCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCC
Confidence            45667778888899999999998876421         2467889885555554  34555543 456779999999999


Q ss_pred             CCEEEEEEEEeCCe-eEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCC--Cc
Q psy16863        319 DGGRYSVTASNESG-YSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN--KI  395 (1075)
Q Consensus       319 d~G~Y~C~a~n~~g-~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~--~~  395 (1075)
                      |+|.|+|.|.|..| ..+..+.|.|..    +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|+|+|..+...  .+
T Consensus        73 D~G~Y~C~~~n~~g~~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~  148 (291)
T 1qz1_A           73 DAGIYKCVVTAEDGTQSEATVNVKIFQ----KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVR  148 (291)
T ss_dssp             GCEEEEEEEECTTSCEEEEEEEEEEEC----CSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTT
T ss_pred             CCEEEEEEEEcCCCCeeEEEEEEEeec----cccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCce
Confidence            99999999999885 456677777773    788888888889999999999999999999999999999887543  34


Q ss_pred             EEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCcee--eEEEEEeecCCCCCCCeeeeec---ceEEecCCeEEEEEEE
Q psy16863        396 YRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSH--CSCELSVLVPKAYKAPFFTKEL---EAILTEQGTVSLECKV  470 (1075)
Q Consensus       396 ~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~--~s~~l~V~~~~~~~~p~~~~~~---~~~~~~g~~v~l~C~~  470 (1075)
                      +....++   .|.|.++..+|+|.|+|.|.|..+...  ....|.|..+|.     +....   ...+.+|+.+.|.|.+
T Consensus       149 ~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~-----~~~~~~~~~~~~~~g~~v~l~C~~  220 (291)
T 1qz1_A          149 FIVLSNN---YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPT-----VQARQSIVNATANLGQSVTLVCDA  220 (291)
T ss_dssp             EEECTTS---CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEE-----EEESCSEEEEETTSCCCEEEEEEE
T ss_pred             EEEccCC---cEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCc-----ccccccccccccccCceEEEEEEE
Confidence            4333333   489999999999999999999765443  345566655443     22211   2246789999999999


Q ss_pred             ECCCCCeEEEEeCCEeccCCC-----------EEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEe
Q psy16863        471 MGIPTPQLIWYKDNKKIKAGD-----------IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIAR  528 (1075)
Q Consensus       471 ~g~p~~~v~W~~~g~~l~~~~-----------~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~  528 (1075)
                      .|.|.|.+.|+++|..+..+.           ...|.|..+..+|+|.|+|.|.|..|....++.|.|.
T Consensus       221 ~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  289 (291)
T 1qz1_A          221 DGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF  289 (291)
T ss_dssp             EEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEeCCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEE
Confidence            999999999999999987653           2369999999999999999999999999999988886

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.97  E-value=1.3e-29  Score=275.69  Aligned_cols=275  Identities=20%  Similarity=0.288  Sum_probs=211.9

Q ss_pred             cccceeecceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEee-CCCceeccCcEEEEecCCeEEEEEceeccCCC
Q psy16863        135 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRA-QGDHPIFGNRFRAINRDGRTELNIRRVRRDDG  213 (1075)
Q Consensus       135 ~p~~~~~~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~  213 (1075)
                      +|.+...+.+..+.+|+.++|.|.+.+.          | ..+.|++ +|..+....++.+...+....|.|.+++.+|+
T Consensus         4 ~p~v~~~~~~~~v~~G~~v~l~C~~~~~----------p-~~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~   72 (291)
T 2wim_A            4 LLQVTISLSKVELSVGESKFFTCTAIGE----------P-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDA   72 (291)
T ss_dssp             CCEEEESCSEEEEETTCCEEEEEEEESC----------C-SEEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             CceEEEeccceEecCCCcEEEEEEEeCC----------C-CceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccC
Confidence            4667778888999999999988887653          3 3789999 55555567788777777788999999999999


Q ss_pred             eEEEEEEEcCceeE-EEEEEEeeeccCCCCCccccccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCc
Q psy16863        214 GRYSVTASNESGYS-TAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDH  292 (1075)
Q Consensus       214 G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~  292 (1075)
                      |.|+|.|.|..|.. +..+.|.|.    .+|.+...+....+.+|+.+.|.|.+.+          .+.+.+.|++++..
T Consensus        73 G~Y~C~~~n~~g~~~~~~~~l~v~----~~~~~~~~~~~~~v~~G~~v~l~C~~~~----------~p~~~v~W~~~~~~  138 (291)
T 2wim_A           73 GIYRCQATDAKGQTQEATVVLEIY----QKLTFREVVSPQEFKQGEDAEVVCRVSS----------SPAPAVSWLYHNEE  138 (291)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEEEE----CCCBCCSCCCSEEEETTSCEEECCCCBC----------SSCCEEEEECC---
T ss_pred             EEEEEEEecccCceEEEEEEEEec----CCcceEeCCCChhhcCCCCEEEEEEEcc----------CCCCEEEEEECCcc
Confidence            99999999998876 456666665    4566677777888999999999887654          34567888887765


Q ss_pred             ccc--CCCeEEEeeCCeEEEEEcccCCCCCEEEEEEEEeCCee--EEEEEEEEEecCCCCCCeeeeecC--ceeeccCCe
Q psy16863        293 PIF--GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGY--STAKFELSVESQVPDAPAFIRRLH--DIAVKVGTR  366 (1075)
Q Consensus       293 ~~~--~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l~V~~~~~~~p~~~~~~~--~~~v~~G~~  366 (1075)
                      ...  ..++.+...+   .|.|.+++.+|+|.|+|.|.|..+.  ....+.+.|..    +|.+.....  ...+.+|+.
T Consensus       139 ~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~----~p~~~~~~~~~~~~~~~g~~  211 (291)
T 2wim_A          139 VTTISDNRFAMLANN---NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV----PPAISMPQKSFNATAERGEE  211 (291)
T ss_dssp             -CBCCCSSEEECTTS---CEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEB----CCCCBCSCSEEECCSSSCCE
T ss_pred             ccccCCceEEEccCC---CEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEecc----CCccccCcccccceecCCCe
Confidence            543  3444433222   6999999999999999999997643  34555666664    555544333  457889999


Q ss_pred             EEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeecCC
Q psy16863        367 ARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPK  443 (1075)
Q Consensus       367 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~  443 (1075)
                      +.|.|.+.|.|.+.|.|+|+|..+..+.++.+...+  ..|.|.++..+|+|.|+|.|.|..|....++.|.|..++
T Consensus       212 ~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~  286 (291)
T 2wim_A          212 MTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN--TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQH  286 (291)
T ss_dssp             EEEECBCCCBSCCEEEEEETTEECCCTTTEEECSTT--CEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC----
T ss_pred             EEEEEEeecCCCCeEEEEECCEECcCCccEEEcCCc--cEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEec
Confidence            999999999999999999999999888777654433  358999999999999999999999999999999988764

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.97  E-value=2.6e-29  Score=293.27  Aligned_cols=355  Identities=14%  Similarity=0.165  Sum_probs=216.8

Q ss_pred             ccceEeecCCeEEEEEEEecCC-CCceEEEEeCC--eE---Ee--------------cCCcEEEEEcC-CceEEEEEeee
Q psy16863        557 VENVKAKIGTSAILECQVLVPP-WPRSIYWYNKE--GV---VE--------------ASDKYHIMADG-LGGYSIEINYL  615 (1075)
Q Consensus       557 ~~~~~v~~G~~~~L~C~~~~~p-~p~~v~W~~~~--~~---i~--------------~~~~~~~~~~~-~~~~~L~i~~~  615 (1075)
                      +..+.+.+|+.++|.|.+.+.+ ....+.||+..  +.   +.              ...++.+..+. .+...|.|.++
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   87 (475)
T 1iga_A            8 SGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSL   87 (475)
T ss_pred             CCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEECCC
Confidence            4567889999999999998764 12379999853  11   10              12455554432 24568999999


Q ss_pred             eecCCceEEEEEECCCCc-----eeeeeEEEEEeCCCCcCCCceeeccceeeecCCeEEEEEEEecC-CC-C-eEEEEEC
Q psy16863        616 EAVDDGEWKCVATSSSGV-----KQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGF-PT-P-TLQWFKD  687 (1075)
Q Consensus       616 ~~~d~G~Y~C~a~n~~g~-----~~~~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~l~C~v~g~-p~-p-~v~W~k~  687 (1075)
                      +.+|+|.|.|.+.|..|.     .......|.|.... ..+|.+.......+.+|+.+.|.|.+.|. |. | .|+|+++
T Consensus        88 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~-~~~P~i~~~~~~~~~~g~~v~L~C~~~g~~P~~p~~v~W~~~  166 (475)
T 1iga_A           88 RPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSAS-PTSPKVFPLSLCSTQPDGNVVIACLVQGFFPQEPLSVTWSES  166 (475)
T ss_pred             ChhhCEEEEEEEeccCCCccceeeecCceEEEeccCC-CcCCeEEecCccccCCCCeEEEEEEEeeecCCCceEEEEcCC
Confidence            999999999999998762     11123355554311 12344332222223578899999999987 66 5 9999998


Q ss_pred             CEEcC----------CCCeEEEe------e--cCCCceEEEEEEecCceE-EEEEEEEEEeccccCchhhhhhh--ccCC
Q psy16863        688 NEELK----------PGDVYQLT------G--TSSLGSYCCVAKNVMGKA-ESSTQLTIEDIRNHLSEEDKLLL--LTNN  746 (1075)
Q Consensus       688 g~~l~----------~~~~~~~~------~--~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~~~~~~~~~~~~~~--~~~~  746 (1075)
                      +....          .+..|.+.      .  .+|.|.|+|.|.|..|.. ...+.|.|...+.  ........  ....
T Consensus       167 ~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~--~~~~~~~~~~~~~~  244 (475)
T 1iga_A          167 GQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPP--TPSPSTPPTPSPSC  244 (475)
T ss_pred             CcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcc--cccccccccCCCCC
Confidence            75321          22233322      1  257899999999998742 1222322311000  00000000  0000


Q ss_pred             CCCeE-EeccceeeeecCCeEEEEEEEecCCC---CeEEEEECCEEeecCCcEEEEEeeC----cEEEEEEccccCCCCe
Q psy16863        747 KAPKF-IEGLKSCQATVNEEFKFTVQVSISPE---PKVSWFRDDQQVVESDNVKILKETL----GVCHLKIHALEVADQA  818 (1075)
Q Consensus       747 ~~p~~-~~~~~~~~~~~g~~~~l~C~v~g~p~---p~v~W~k~g~~i~~~~~~~~~~~~~----~~~~L~I~~~~~~D~G  818 (1075)
                      .+|.+ +..+....+.+|+.+.|.|.+.|.++   +.|+|  ++..+.............    ....|.|.+++.+|+|
T Consensus       245 ~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G  322 (475)
T 1iga_A          245 CHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGK  322 (475)
T ss_pred             CCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEchHHhccCC
Confidence            24443 44444444689999999999998754   69999  444443221111110001    2347999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEEecCCCCCCeeeeecc--eeecCCCeEEEEEEEEccCC--CeeEEEECCEEcCCCCe--
Q psy16863        819 EWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK--AVLSEGGAVNLECKVIGVPQ--PTLKWFKDGRELKAGDI--  892 (1075)
Q Consensus       819 ~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~--~~~~~g~~~~L~C~v~g~p~--p~v~W~k~g~~l~~~~~--  892 (1075)
                      .|+|.|.|..|.......|.+.  ....+|.+.....  ..+.+|+.++|.|.+.|.++  +.|+|+|||.+|..+..  
T Consensus       323 ~Y~C~a~n~~~~~~~~~~v~~~--~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~  400 (475)
T 1iga_A          323 TFTCTAAYPESKTPLTATLSKS--GNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLT  400 (475)
T ss_pred             cEEEEEEcCCCCCceEEEeecC--CCCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCceee
Confidence            9999999999986544444331  1123444432221  12568899999999999743  58999999999865421  


Q ss_pred             -------------e----EEEECCCCceeeEEEEEEEEeCCee
Q psy16863        893 -------------H----KIISGEDGTCCLGIYTCEAHNCMGT  918 (1075)
Q Consensus       893 -------------~----~i~~~~~~~~d~G~Y~C~a~N~~G~  918 (1075)
                                   +    .|.+......|.|.|+|.|.|....
T Consensus       401 ~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~  443 (475)
T 1iga_A          401 WASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  443 (475)
T ss_pred             cccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence                         1    1222222234689999999998654

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.97  E-value=3.8e-32  Score=313.64  Aligned_cols=359  Identities=13%  Similarity=0.136  Sum_probs=230.1

Q ss_pred             cccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCC-Ccc------------------ccCCCeEEEee--CCe
Q psy16863        249 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG-DHP------------------IFGNRFRAINR--DGR  307 (1075)
Q Consensus       249 ~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~-~~~------------------~~~~~~~~~~~--~~~  307 (1075)
                      +..+.+.+|+.++|.|.+.+...        +...+.|++++ +..                  ....|+.+..+  ++.
T Consensus         6 ~~~~~v~~G~~v~L~C~~~~~~~--------~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   77 (434)
T 1igy_B            6 SGAELARPGASVKMSCKASGYTF--------TTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNT   77 (434)
T ss_dssp             CCCCEECTBCCEEECCEECSSCG--------GGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCB
T ss_pred             CCCeEecCCCCEEEEEEccCCcc--------cCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCE
Confidence            45567899999999999875310        12234444432 110                  01345555433  345


Q ss_pred             EEEEEcccCCCCCEEEEEEEEeCCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecC-CCc-EEEEEE
Q psy16863        308 TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSP-TEI-KIHWYR  385 (1075)
Q Consensus       308 ~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p~~-~v~W~k  385 (1075)
                      .+|.|.+++.+|+|.|+|.|.|..+.....+.|.|....+.+|.+........+.+|+.++|.|.+.|. |.+ .|.|+|
T Consensus        78 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k  157 (434)
T 1igy_B           78 ANIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS  157 (434)
T ss_dssp             BCEEECSBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETT
T ss_pred             EEEEECCCChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEee
Confidence            589999999999999999999965544455677776433445655543444456899999999999885 665 999999


Q ss_pred             CCEecCCCCcEEEEEcCCE---EEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeec---------CCCCCCCeeeee
Q psy16863        386 NDRKLEENKIYRTQHDGNF---YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV---------PKAYKAPFFTKE  453 (1075)
Q Consensus       386 ~g~~l~~~~~~~~~~~g~~---~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~---------~~~~~~p~~~~~  453 (1075)
                      +|..+...........+..   ..|.|.++..+| |.|+|.|.|..|.......+.+..         .+.. +..+..+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~-p~v~~~~  235 (434)
T 1igy_B          158 GSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEV-SSVFIFP  235 (434)
T ss_dssp             TTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSS-CCEEEEC
T ss_pred             CCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcC-cEEEEeC
Confidence            9975421000001111221   358999999889 999999999999865555554321         1111 2233333


Q ss_pred             cceE--EecCCeEEEEEEEECCC----CCeEEEEeCCEeccCCC--------------EEEEEeCCCCCCCcEEEEEEEE
Q psy16863        454 LEAI--LTEQGTVSLECKVMGIP----TPQLIWYKDNKKIKAGD--------------IFALTANPKDPSSLGTYTCEAV  513 (1075)
Q Consensus       454 ~~~~--~~~g~~v~l~C~~~g~p----~~~v~W~~~g~~l~~~~--------------~~~l~i~~~~~~d~G~Y~C~a~  513 (1075)
                      +...  +.+|+.+.|.|.+.|.|    .+.|+|+|+|..+....              ...|.|..+..+|+|.|+|.|.
T Consensus       236 p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  315 (434)
T 1igy_B          236 PKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVN  315 (434)
T ss_dssp             CCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBC
T ss_pred             CChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEE
Confidence            3222  77899999999999884    35899999998874321              1257788888889999999999


Q ss_pred             ecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEecC-CCCceEEEEeCCeEE
Q psy16863        514 NCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVP-PWPRSIYWYNKEGVV  592 (1075)
Q Consensus       514 n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~-p~p~~v~W~~~~~~i  592 (1075)
                      |..|.......+.+.               +... .+|.+...+.......|+.++|.|.+.+. |.+..|+|+++|..+
T Consensus       316 n~~~~~~~~~~v~~~---------------~~~~-~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l  379 (434)
T 1igy_B          316 SAAFPAPIEKTISKT---------------KGKP-RAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAP  379 (434)
T ss_dssp             CSSCSSCCCCCCCCC---------------CSCC-BCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCC
T ss_pred             CCCCCCceeEEEecc---------------CCCC-cCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEec
Confidence            988864222221110               0111 23333332222223457789999999984 444589999999887


Q ss_pred             ecCCcEEEEEcCCce----EEEEEeeeeecCCceEEEEEECCCCc
Q psy16863        593 EASDKYHIMADGLGG----YSIEINYLEAVDDGEWKCVATSSSGV  633 (1075)
Q Consensus       593 ~~~~~~~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~a~n~~g~  633 (1075)
                      ..........++.+.    ..|.|.....+|+|.|+|.|.|....
T Consensus       380 ~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  424 (434)
T 1igy_B          380 ENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  424 (434)
T ss_dssp             SCCEECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTSG
T ss_pred             CCceeccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcCCCC
Confidence            432111111122222    24677777778899999999998754

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.97  E-value=1.8e-28  Score=286.22  Aligned_cols=359  Identities=11%  Similarity=0.136  Sum_probs=228.9

Q ss_pred             cccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCC--Ccc-----------------ccCCCeEEEee--C
Q psy16863        247 RRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG--DHP-----------------IFGNRFRAINR--D  305 (1075)
Q Consensus       247 ~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~--~~~-----------------~~~~~~~~~~~--~  305 (1075)
                      ..+..+.+.+|+.++|.|.+.+..        .....+.|++.+  ..+                 ....|+.+..+  +
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~--------~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~   77 (475)
T 1iga_A            6 EQSGAEVKKPGASVKVSCKASGYS--------FTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSA   77 (475)
T ss_pred             ccCCcEEEeCCCCEEEEEEecCCC--------CCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCC
Confidence            345667889999999999987431        012233444321  100                 01346665543  3


Q ss_pred             CeEEEEEcccCCCCCEEEEEEEEeCCe------eEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecC-CC
Q psy16863        306 GRTELNIRRVRRDDGGRYSVTASNESG------YSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSP-TE  378 (1075)
Q Consensus       306 ~~~~L~I~~~~~~d~G~Y~C~a~n~~g------~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p~  378 (1075)
                      +..+|.|.+++.+|+|.|.|.+.|..|      .....+.|.|....+.+|.+.... ...+.+|+.++|.|.+.|. |.
T Consensus        78 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~-~~~~~~g~~v~L~C~~~g~~P~  156 (475)
T 1iga_A           78 TTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLS-LCSTQPDGNVVIACLVQGFFPQ  156 (475)
T ss_pred             CeEEEEECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecC-ccccCCCCeEEEEEEEeeecCC
Confidence            456899999999999999999999765      223456777764333456554332 2234799999999999886 55


Q ss_pred             -c-EEEEEECCEecCCCCcEEE--EEcCCE---EEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeecCC--------
Q psy16863        379 -I-KIHWYRNDRKLEENKIYRT--QHDGNF---YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPK--------  443 (1075)
Q Consensus       379 -~-~v~W~k~g~~l~~~~~~~~--~~~g~~---~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~--------  443 (1075)
                       + .|.|+|++..+........  ..+|..   ..|.|..+..+|+|.|+|.|.|..+.. .+..+.+.++.        
T Consensus       157 ~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~-~~~~v~l~V~~~~~~~~~~  235 (475)
T 1iga_A          157 EPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS-QDVTVPCPVPSTPPTPSPS  235 (475)
T ss_pred             CceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCc-eeeeEecccccCccccccc
Confidence             4 9999999854321100001  122322   358898988899999999999998742 23334432211        


Q ss_pred             -------CCCCCee-eeecce-EEecCCeEEEEEEEECCCC---CeEEEEeCCEeccC-----------C---CEEEEEe
Q psy16863        444 -------AYKAPFF-TKELEA-ILTEQGTVSLECKVMGIPT---PQLIWYKDNKKIKA-----------G---DIFALTA  497 (1075)
Q Consensus       444 -------~~~~p~~-~~~~~~-~~~~g~~v~l~C~~~g~p~---~~v~W~~~g~~l~~-----------~---~~~~l~i  497 (1075)
                             ...+|.+ ..++.. .+.+|+.+.|.|.+.|.++   +.|+|  ++..+..           +   ....|.|
T Consensus       236 ~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I  313 (475)
T 1iga_A          236 TPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPG  313 (475)
T ss_pred             ccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEE
Confidence                   1113333 222222 2578999999999998754   59999  4444321           1   1235889


Q ss_pred             CCCCCCCcEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEecC
Q psy16863        498 NPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVP  577 (1075)
Q Consensus       498 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~  577 (1075)
                      ..+..+|+|.|+|.|.|..|.......+.+..                ...+|......+....+.+|+.++|.|.+.+.
T Consensus       314 ~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~----------------~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~  377 (475)
T 1iga_A          314 CAEPWNHGKTFTCTAAYPESKTPLTATLSKSG----------------NTFRPEVHLLPPPSEELALNELVTLTCLARGF  377 (475)
T ss_pred             chHHhccCCcEEEEEEcCCCCCceEEEeecCC----------------CCCCCeEEEECCChHHhccCCceEEEEEEeee
Confidence            99999999999999999998765444443210                01123333333333346789999999999986


Q ss_pred             C-CCceEEEEeCCeEEecCCcEE--EEEc---CCce----EEEEEeeeeecCCceEEEEEECCCCc
Q psy16863        578 P-WPRSIYWYNKEGVVEASDKYH--IMAD---GLGG----YSIEINYLEAVDDGEWKCVATSSSGV  633 (1075)
Q Consensus       578 p-~p~~v~W~~~~~~i~~~~~~~--~~~~---~~~~----~~L~i~~~~~~d~G~Y~C~a~n~~g~  633 (1075)
                      + .+..|.|+++|..+.......  ...+   +.+.    ..|.|.....+|+|.|+|.|.|....
T Consensus       378 ~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~  443 (475)
T 1iga_A          378 SPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  443 (475)
T ss_pred             ECCCCEEEEEECCEECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence            3 334899999998876543111  1111   2222    24777777788899999999998754

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.97  E-value=2.8e-31  Score=295.21  Aligned_cols=273  Identities=19%  Similarity=0.335  Sum_probs=143.2

Q ss_pred             ceeeecCCeEEEEEEEecC-CCCeEEEEECCEEcCCCCeEEEe---------ecCCCceEEEEEEecCceEEEEEEEEEE
Q psy16863        659 KAVMTDDGLVSFECKVVGF-PTPTLQWFKDNEELKPGDVYQLT---------GTSSLGSYCCVAKNVMGKAESSTQLTIE  728 (1075)
Q Consensus       659 ~~~~~~g~~~~l~C~v~g~-p~p~v~W~k~g~~l~~~~~~~~~---------~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  728 (1075)
                      ...+.+|+.+.|.|.+.+. |.+.++|+|+|..+..+.++.+.         ..+|+|.|+|.|.|. |.....+.|.|.
T Consensus        17 ~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~~~l~V~   95 (334)
T 1ry7_B           17 QLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLT-QRVLCHFSVRVT   95 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEeccceEEEeecccccCEEEEEEEEeC-CeEEEEEEEEEe
Confidence            3457789999999999986 67899999999988766554332         347999999999998 877777888887


Q ss_pred             eccccCchh----hhhhhccCCCCCeEEecc----ceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEe
Q psy16863        729 DIRNHLSEE----DKLLLLTNNKAPKFIEGL----KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKE  800 (1075)
Q Consensus       729 ~~~~~~~~~----~~~~~~~~~~~p~~~~~~----~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~  800 (1075)
                      ..+......    ..........+|.|..+.    ....+..|+.+.|.|.+.|.|.|.++|+|+|..+....++.....
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~  175 (334)
T 1ry7_B           96 DAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKL  175 (334)
T ss_dssp             -----------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCCC
T ss_pred             ccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccceec
Confidence            532111000    000000111355555432    235688999999999999999999999999998876554321112


Q ss_pred             eCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEecCCCCCCeeee--ecceeecCCCeEEEEEEEEccCCCee
Q psy16863        801 TLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLE--ELKAVLSEGGAVNLECKVIGVPQPTL  878 (1075)
Q Consensus       801 ~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~--~~~~~~~~g~~~~L~C~v~g~p~p~v  878 (1075)
                      ..+...|.|.+++.+|+|.|+|.|.|..|....++.|.|...+. .+|.+..  +....+.+|+.++|.|.+.|.|.|.|
T Consensus       176 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~-~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v  254 (334)
T 1ry7_B          176 RHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP-HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHI  254 (334)
T ss_dssp             CTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCC-SSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEE
T ss_pred             ccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCC-CCCceEecCCCceEEeCCCCEEEEEEEecCCCCeE
Confidence            22345799999999999999999999999998888898886432 1233322  12234778999999999999999999


Q ss_pred             EEEE----CCEEcCCCCe------------------eEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEecCChh
Q psy16863        879 KWFK----DGRELKAGDI------------------HKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKSQ  933 (1075)
Q Consensus       879 ~W~k----~g~~l~~~~~------------------~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~  933 (1075)
                      +|+|    ||..+..+..                  ..|.+......|+|.|+|.|.|.+|..++++.|.|.+.+.+
T Consensus       255 ~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~  331 (334)
T 1ry7_B          255 QWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEE  331 (334)
T ss_dssp             EEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSCCC
T ss_pred             EEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECCCC
Confidence            9999    7777654321                  25777777788999999999999999999999999866543

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.96  E-value=2.1e-28  Score=269.15  Aligned_cols=271  Identities=17%  Similarity=0.220  Sum_probs=199.3

Q ss_pred             ceeeccCCeEEEEEEEe-cCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEE
Q psy16863        358 DIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCE  436 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~~-g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~  436 (1075)
                      .+.+.+|+.+.|.|... +.|.+.|+|+|+|..+..+.++.+..++....|.|.+++.+|+|.|+|.|.|..|... +..
T Consensus        10 ~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~   88 (312)
T 2y23_A           10 VVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYL   88 (312)
T ss_dssp             EEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EEE
T ss_pred             eEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EEE
Confidence            46788999999999884 5788999999999999988899998889888999999999999999999999988554 566


Q ss_pred             EEeecCCCC-------CCCeee-eec-ceEEecCCeEEEEEEEE-CCCCCeEEEEeCCEeccCCC-----------EEEE
Q psy16863        437 LSVLVPKAY-------KAPFFT-KEL-EAILTEQGTVSLECKVM-GIPTPQLIWYKDNKKIKAGD-----------IFAL  495 (1075)
Q Consensus       437 l~V~~~~~~-------~~p~~~-~~~-~~~~~~g~~v~l~C~~~-g~p~~~v~W~~~g~~l~~~~-----------~~~l  495 (1075)
                      +.|......       .+|.+. ... ...+.+|+.+.|.|.+. +.|.+.++|+++|.++..+.           ...|
T Consensus        89 l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L  168 (312)
T 2y23_A           89 IDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEM  168 (312)
T ss_dssp             ECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEE
T ss_pred             EEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEE
Confidence            666421000       011222 222 34588999999999999 89999999999999987644           2349


Q ss_pred             EeCCCCCCCcEEEEEEEEecceeeEEEEEEEEeccccccCC--CCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEE
Q psy16863        496 TANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDN--DDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQ  573 (1075)
Q Consensus       496 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~  573 (1075)
                      .|..+..+|+|.|+|.|.|..+..  ...+.+.+.......  ......... ...+|.+...+. ..+.+|+.+.|.|.
T Consensus       169 ~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~-~~v~~G~~~~l~C~  244 (312)
T 2y23_A          169 FMEKLQDEDEGTYTFQLQDGKATN--HSTVVLVGDVFKKLQKEAEFQRQEWI-RKQGPHFVEYLS-WEVTGECNVLLKCK  244 (312)
T ss_dssp             EESCCCGGGCEEEEEEEESSSCEE--EEEEEECTHHHHHHHHHHHHHHHHHH-HHHSSEEEEEEE-EEEETTTEEEEEEE
T ss_pred             EEccCCcccCEeEEEEEEeCCceE--EEEEEEcchhhhhhcccccccccchh-hccCCceeecce-EEEeCCCEEEEEEE
Confidence            999999999999999998754433  333443211000000  000000000 012355554433 78899999999999


Q ss_pred             EecCCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceee
Q psy16863        574 VLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQF  636 (1075)
Q Consensus       574 ~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  636 (1075)
                      +.+.|.|..+.|++++..+..+.++.+. .  +...|.|.+++.+|+|.|+|.|.|..|....
T Consensus       245 ~~~~p~~~~v~W~~~g~~~~~~~~~~~~-~--~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~  304 (312)
T 2y23_A          245 VANIKKETHIVWYKDEREISVDEKHDFK-D--GICTLLITEFSKKDAGIYEVILKDDRGKDKS  304 (312)
T ss_dssp             EESCCSSCEEEEEETTEEEEEECCC-------CEEEEEECSCSGGGCEEEEEEEESTTCCEEE
T ss_pred             EcCCCCCCEEEEeeCCEECCCCCcEEEE-C--CEEEEEECcCCHHHCEEEEEEEEcCCCceee
Confidence            9999877689999999999877776655 2  2469999999999999999999999998763

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.96  E-value=1.6e-28  Score=270.12  Aligned_cols=273  Identities=14%  Similarity=0.237  Sum_probs=208.9

Q ss_pred             eeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCCCceeccCcEEEEecCCeEEEEEceeccCCCeEEEEEEEcC
Q psy16863        144 DIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNE  223 (1075)
Q Consensus       144 ~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~  223 (1075)
                      .+.|.+|+.++|.|+...         +.|.+.+.|++++..+....++.+...++...|.|.+++.+|+|.|+|.|.|.
T Consensus        10 ~~~v~eg~~v~l~~~~~~---------~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~   80 (312)
T 2y23_A           10 VVNVDDDGVISLNFECDK---------MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDT   80 (312)
T ss_dssp             EEEECTTCCEEEEEECSS---------CCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSS
T ss_pred             eEEEecCCeEEEEEEEeC---------CCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeC
Confidence            456889999999887652         45778999999998777788888888888889999999999999999999999


Q ss_pred             ceeEEEEEEEeeeccC--C------CCCccccccc-cceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCccc
Q psy16863        224 SGYSTAKFELSVESQV--P------DAPAFIRRLH-DIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPI  294 (1075)
Q Consensus       224 ~g~~~~~~~l~V~~~~--~------~~p~~~~~~~-~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~~  294 (1075)
                      .|... ++.+.|....  .      .+|.+..... ...+.+|+.+.|.|.+..         +.+.+.+.|++++..+.
T Consensus        81 ~g~~~-s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~---------~~p~~~v~W~~~~~~i~  150 (312)
T 2y23_A           81 DGIAS-SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEK---------LSGNAKVNYIFNEKEIF  150 (312)
T ss_dssp             CCCCE-EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESC---------CCSSCEEEEEETTEEEC
T ss_pred             CCcEE-EEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEe---------CCCCCEEEEEECCEECe
Confidence            88554 5666664100  0      0344444333 788899999999887762         23567788888877666


Q ss_pred             cCCCeEEEee--CCeEEEEEcccCCCCCEEEEEEEEeCCeeEEEEEEEEEec-----------------CCCCCCeeeee
Q psy16863        295 FGNRFRAINR--DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES-----------------QVPDAPAFIRR  355 (1075)
Q Consensus       295 ~~~~~~~~~~--~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-----------------~~~~~p~~~~~  355 (1075)
                      .+.++.+...  ++..+|.|.+++.+|+|.|+|.|.|..+.....  +.+..                 ....+|.|...
T Consensus       151 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  228 (312)
T 2y23_A          151 EGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHST--VVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY  228 (312)
T ss_dssp             SSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCEEEEE--EEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEE
T ss_pred             eCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCceEEEE--EEEcchhhhhhcccccccccchhhccCCceeec
Confidence            6777777654  566789999999999999999998865544333  33310                 00134777655


Q ss_pred             cCceeeccCCeEEEEEEEecCCCc-EEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeE
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPTEI-KIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCS  434 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p~~-~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s  434 (1075)
                      +. ..+.+|+.+.|.|.+.+.|.+ .|+|+|+|..+..+.++.+.  +....|.|.+++.+|+|.|+|.|.|..|....+
T Consensus       229 ~~-~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~--~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~  305 (312)
T 2y23_A          229 LS-WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSR  305 (312)
T ss_dssp             EE-EEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC------CEEEEEECSCSGGGCEEEEEEEESTTCCEEEE
T ss_pred             ce-EEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEE--CCEEEEEECcCCHHHCEEEEEEEEcCCCceeee
Confidence            44 788999999999999998887 99999999999866665554  445689999999999999999999999999988


Q ss_pred             EEEEee
Q psy16863        435 CELSVL  440 (1075)
Q Consensus       435 ~~l~V~  440 (1075)
                      +.|.|.
T Consensus       306 ~~l~i~  311 (312)
T 2y23_A          306 LKLVDE  311 (312)
T ss_dssp             EEECSC
T ss_pred             eEEEec
Confidence            888764

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.96  E-value=1.1e-28  Score=268.20  Aligned_cols=268  Identities=15%  Similarity=0.203  Sum_probs=201.9

Q ss_pred             CCcccceeecceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCCCceeccCcEEEEecCCeEEEEEceeccCC
Q psy16863        133 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDD  212 (1075)
Q Consensus       133 ~~~p~~~~~~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D  212 (1075)
                      +.+|.|...+.+..+.+|++++|.|.+.+              .+.|++++..+    ..  ....+ ..|.|.+++.+|
T Consensus        10 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~~--------------~i~W~~~~~~~----~~--~~~~~-~~L~i~~~~~~d   68 (290)
T 2o26_X           10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD--------------FVRWTFKTYFN----EM--VENKK-NEWIQEKAEATR   68 (290)
T ss_dssp             --CCEESSCSSEEEEETTSCEEEEEECTT--------------EEEEEEECSSS----CE--EEECS-SEEEETTCCGGG
T ss_pred             CCCCEEeCCCCeEEEcCCCcEEEEECCCC--------------cEEEecCCcce----ee--ecCCC-ceEEEeccCHHh
Confidence            34677777788889999999999888754              67899988765    11  12222 589999999999


Q ss_pred             CeEEEEEEEcCceeEEEEEEEeeeccCCCCCccccccccceeeccceeEEEEEecCCCceEEEEecCCC-eeeEEecCCC
Q psy16863        213 GGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNT-IPFSFRAQGD  291 (1075)
Q Consensus       213 ~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~-~~~~w~~~~~  291 (1075)
                      +|.|+|.|.|  |. +..+.|.|..    +|.+...+.+..+.+|+.+.|.|.+.+           +. +.+.|++.++
T Consensus        69 ~G~Y~C~~~n--g~-~~~~~l~V~~----~~~~~~~~~~~~~~~g~~v~l~C~~~~-----------p~~~~v~W~~~~g  130 (290)
T 2o26_X           69 TGTYTCSNSN--GL-TSSIYVFVRD----PAKLFLVGLPLFGKEDSDALVRCPLTD-----------PQVSQYSLIECDG  130 (290)
T ss_dssp             CEEEEEEESS--SC-EEEEEEEEEC----SSCCBCCCCCEEEETTSCEEECCCBSC-----------CSCEEEEEEETTS
T ss_pred             CeEEEEEeeC--Cc-cEEEEEEEeC----CCcccccccceEEecCCeEEEeCcCCC-----------CCCceEEEEeCCC
Confidence            9999999999  54 6677777763    333335667788899999999887653           34 6788976666


Q ss_pred             cccc-CCCeEEEeeCCeEEEEEcccCCCCCE-EEEEEEEeCCeeE-EEEEEEEEecCCCCCCeeeeecCceeeccCCeEE
Q psy16863        292 HPIF-GNRFRAINRDGRTELNIRRVRRDDGG-RYSVTASNESGYS-TAKFELSVESQVPDAPAFIRRLHDIAVKVGTRAR  368 (1075)
Q Consensus       292 ~~~~-~~~~~~~~~~~~~~L~I~~~~~~d~G-~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~  368 (1075)
                      ..+. +.++.....   ..|.|.+++.+|+| .|+|.|.|..+.. +..+.|.|......+|.+...+....+.+|+.++
T Consensus       131 ~~l~~~~~~~~~~~---~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~  207 (290)
T 2o26_X          131 KSLPTDLTFVPNPK---AGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFT  207 (290)
T ss_dssp             CCCCTTCEEEEETT---TEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEE
T ss_pred             cCCCCCCceeeCCC---CCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEE
Confidence            6665 444433322   27999999999999 9999999986653 3457788875455688888777778999999999


Q ss_pred             EEEEEecCCCcE-EEEEECCEec----CCCCcEEEE---EcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEee
Q psy16863        369 LLVEIRSPTEIK-IHWYRNDRKL----EENKIYRTQ---HDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL  440 (1075)
Q Consensus       369 l~C~~~g~p~~~-v~W~k~g~~l----~~~~~~~~~---~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~  440 (1075)
                      |.|.+.|.|.+. |+|+|+|..+    .........   .......|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus       208 l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  287 (290)
T 2o26_X          208 VVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV  287 (290)
T ss_dssp             EEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC-
T ss_pred             EEEEEecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEE
Confidence            999999998885 9999999873    333222222   12234579999999999999999999999999888888876


Q ss_pred             cC
Q psy16863        441 VP  442 (1075)
Q Consensus       441 ~~  442 (1075)
                      .+
T Consensus       288 ~~  289 (290)
T 2o26_X          288 EK  289 (290)
T ss_dssp             --
T ss_pred             eC
Confidence            54

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.96  E-value=3.2e-31  Score=305.93  Aligned_cols=352  Identities=11%  Similarity=0.163  Sum_probs=224.1

Q ss_pred             cceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCC--Cce-----------------eccCcEEEEec--CCe
Q psy16863        142 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG--DHP-----------------IFGNRFRAINR--DGR  200 (1075)
Q Consensus       142 ~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~--~~~-----------------~~~~~~~~~~~--~~~  200 (1075)
                      +..+.+.+|++++|.|.+.+..        .+.+.+.|++++  ..+                 ...+|+.+...  ++.
T Consensus         6 ~~~~~v~~G~~v~L~C~~~~~~--------~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   77 (434)
T 1igy_B            6 SGAELARPGASVKMSCKASGYT--------FTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNT   77 (434)
T ss_dssp             CCCCEECTBCCEEECCEECSSC--------GGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCB
T ss_pred             CCCeEecCCCCEEEEEEccCCc--------ccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCE
Confidence            3456788999999999887532        023567787753  111                 01346655432  345


Q ss_pred             EEEEEceeccCCCeEEEEEEEcCceeEEEEEEEeeeccCCCCCccccccccceeeccceeEEEEEecCCCceEEEEecCC
Q psy16863        201 TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNN  280 (1075)
Q Consensus       201 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~  280 (1075)
                      ..|.|.+++.+|+|.|+|.|.|..+.....+.|.|....+.+|.+........+.+|+.++|.|.+.+.         .+
T Consensus        78 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~---------~P  148 (434)
T 1igy_B           78 ANIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGY---------FP  148 (434)
T ss_dssp             BCEEECSBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEE---------BS
T ss_pred             EEEEECCCChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeee---------cC
Confidence            689999999999999999999965544455677776433344544433334456799999998887642         12


Q ss_pred             C-eeeEEecCCCcccc--------CCCeEEEeeCCeEEEEEcccCCCCCEEEEEEEEeCCeeEEEEEEEEEecC------
Q psy16863        281 T-IPFSFRAQGDHPIF--------GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQ------  345 (1075)
Q Consensus       281 ~-~~~~w~~~~~~~~~--------~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~------  345 (1075)
                      . +.+.|++++.....        ...+..     ...|+|.++..+| |.|+|.|.|..|.......+.+...      
T Consensus       149 ~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~-----~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~  222 (434)
T 1igy_B          149 EPVTVTWNSGSLSSGVHTFPAVLQSDLYTL-----SSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCI  222 (434)
T ss_dssp             SCCEEEETTTTBCSSEEECCCEECSSCEEE-----EEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCC
T ss_pred             CCeEEEEeeCCcCCCeEecCceecCCcEEE-----EEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCcccc
Confidence            2 36788776643110        111111     1369999999989 9999999998886444444433200      


Q ss_pred             --CCC-CCeeeeecCcee-eccCCeEEEEEEEecCC----CcEEEEEECCEecCCCCcEEE--EEcC---CEEEEEEccc
Q psy16863        346 --VPD-APAFIRRLHDIA-VKVGTRARLLVEIRSPT----EIKIHWYRNDRKLEENKIYRT--QHDG---NFYFIDLSSV  412 (1075)
Q Consensus       346 --~~~-~p~~~~~~~~~~-v~~G~~v~l~C~~~g~p----~~~v~W~k~g~~l~~~~~~~~--~~~g---~~~~L~I~~v  412 (1075)
                        ... |..++.++.... +.+|+.++|.|.+.|.+    .+.|+|+|+|..+........  ..++   ....|.|.++
T Consensus       223 ~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  302 (434)
T 1igy_B          223 CTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQ  302 (434)
T ss_dssp             CCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHH
T ss_pred             CCCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHH
Confidence              011 233343333222 88999999999998873    468999999987754321111  1122   1235889999


Q ss_pred             CCCCceeEEEEEEeCCCceeeEEEEEeecCCCCCCCeeeeec-ceEEecCCeEEEEEEEECC-CCC-eEEEEeCCEeccC
Q psy16863        413 SLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKEL-EAILTEQGTVSLECKVMGI-PTP-QLIWYKDNKKIKA  489 (1075)
Q Consensus       413 ~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~-~~~~~~g~~v~l~C~~~g~-p~~-~v~W~~~g~~l~~  489 (1075)
                      ..+|+|.|+|.|.|..|.......+.+... ...+|.+.... .....+|+.+.|.|.+.|. |++ .|+|+|||+++..
T Consensus       303 ~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~-~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~  381 (434)
T 1igy_B          303 DWLNGKEFKCRVNSAAFPAPIEKTISKTKG-KPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPEN  381 (434)
T ss_dssp             HHHHTCCCBCCBCCSSCSSCCCCCCCCCCS-CCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSC
T ss_pred             HccCCCcEEEEEECCCCCCceeEEEeccCC-CCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCC
Confidence            999999999999999887533333322111 11233333222 1123357789999999985 433 8999999998743


Q ss_pred             C----------CEE----EEEeCCCCCCCcEEEEEEEEecce
Q psy16863        490 G----------DIF----ALTANPKDPSSLGTYTCEAVNCMG  517 (1075)
Q Consensus       490 ~----------~~~----~l~i~~~~~~d~G~Y~C~a~n~~g  517 (1075)
                      .          ..+    .|.+...+.+|+|.|+|.|.|...
T Consensus       382 ~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l  423 (434)
T 1igy_B          382 YKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  423 (434)
T ss_dssp             CEECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTS
T ss_pred             ceeccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcCCC
Confidence            2          111    355555556678999999999754

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.96  E-value=1.7e-29  Score=278.24  Aligned_cols=247  Identities=15%  Similarity=0.228  Sum_probs=190.3

Q ss_pred             eeecCCeEEEEEEEecCC-CCeEEEEECCEEcC----CCC-------eEEEe--ecCCCceEEEEEEecCceEEEEEEEE
Q psy16863        661 VMTDDGLVSFECKVVGFP-TPTLQWFKDNEELK----PGD-------VYQLT--GTSSLGSYCCVAKNVMGKAESSTQLT  726 (1075)
Q Consensus       661 ~~~~g~~~~l~C~v~g~p-~p~v~W~k~g~~l~----~~~-------~~~~~--~~~d~G~Y~C~a~N~~g~~~~~~~l~  726 (1075)
                      .+.+|+.+.|.|.+.+.| .+.++|+|+|..+.    .+.       .+.+.  ..+|+|.|+|.|.|..|.......+.
T Consensus        16 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~   95 (315)
T 1itb_B           16 VSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAK   95 (315)
T ss_dssp             EEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSCCCCEECCCE
T ss_pred             EEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCceEEEEEEEEE
Confidence            567899999999999887 78999999986432    122       23332  34799999999999998877766666


Q ss_pred             EEeccccCchhhhhhhccCCCCCeEEec---cceeeeecCCeEEEEEEE------ecCCCCeEEEEECCEEeecCCcEEE
Q psy16863        727 IEDIRNHLSEEDKLLLLTNNKAPKFIEG---LKSCQATVNEEFKFTVQV------SISPEPKVSWFRDDQQVVESDNVKI  797 (1075)
Q Consensus       727 V~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~g~~~~l~C~v------~g~p~p~v~W~k~g~~i~~~~~~~~  797 (1075)
                      +..                 .+|.+...   .....+..|+++.|.|.+      .|.|.|.++|+|+|.++..+.... 
T Consensus        96 v~~-----------------~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~-  157 (315)
T 1itb_B           96 FVE-----------------NEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHF-  157 (315)
T ss_dssp             EEC-----------------CCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSE-
T ss_pred             EeC-----------------CCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceE-
Confidence            543                 34444322   223568899999999998      889999999999999996543322 


Q ss_pred             EEeeCcEEEEEEccccCCCCeEEEEEEE-eCCceEE---EEEEEEEEecCCCCCCeeeeecce--eecCCCeEEEEEEEE
Q psy16863        798 LKETLGVCHLKIHALEVADQAEWKCIAT-NDFGQSI---TSCFLKLNVPKHYKKPKFLEELKA--VLSEGGAVNLECKVI  871 (1075)
Q Consensus       798 ~~~~~~~~~L~I~~~~~~D~G~Y~C~A~-N~~G~~~---~s~~l~V~~~~~~~~p~~~~~~~~--~~~~g~~~~L~C~v~  871 (1075)
                      .. ..+  .|.|.+++.+|+|.|+|.|. |..|...   ....+.+..+....+|.+...+..  .+.+|+.++|.|.+.
T Consensus       158 ~~-~~~--~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~  234 (315)
T 1itb_B          158 SG-VKD--RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVT  234 (315)
T ss_dssp             EE-ETT--EEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEE
T ss_pred             ee-cCc--eEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEe
Confidence            22 222  79999999999999999999 8989873   344444554444456777655542  477999999999999


Q ss_pred             ccCCCeeEEEECCEEcCCCCe---------------------eEEEECCCCcee-eEEEEEEEEeCCeeEEEEEEEEEe
Q psy16863        872 GVPQPTLKWFKDGRELKAGDI---------------------HKIISGEDGTCC-LGIYTCEAHNCMGTTSSSAALLGF  928 (1075)
Q Consensus       872 g~p~p~v~W~k~g~~l~~~~~---------------------~~i~~~~~~~~d-~G~Y~C~a~N~~G~~~~~~~l~v~  928 (1075)
                      |.|.|.|+|+|||.++..+..                     ..|.+......| +|.|+|.|.|.+|..++++.|.|.
T Consensus       235 g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~  313 (315)
T 1itb_B          235 GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP  313 (315)
T ss_dssp             ECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred             cCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence            999999999999999986541                     256777788889 999999999999999999988874

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.96  E-value=3.8e-28  Score=263.81  Aligned_cols=258  Identities=17%  Similarity=0.180  Sum_probs=194.0

Q ss_pred             CCCeeeeeccceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEE
Q psy16863        549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVAT  628 (1075)
Q Consensus       549 ~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  628 (1075)
                      .+|.+...+....+.+|+.++|.|.+.+     .+.|++++..+     +.....+   ..|.|.+++.+|+|.|+|.|.
T Consensus        11 ~~P~i~~~~~~~~v~~G~~v~l~C~~~~-----~i~W~~~~~~~-----~~~~~~~---~~L~i~~~~~~d~G~Y~C~~~   77 (290)
T 2o26_X           11 SPPSIHPAQSELIVEAGDTLSLTCIDPD-----FVRWTFKTYFN-----EMVENKK---NEWIQEKAEATRTGTYTCSNS   77 (290)
T ss_dssp             -CCEESSCSSEEEEETTSCEEEEEECTT-----EEEEEEECSSS-----CEEEECS---SEEEETTCCGGGCEEEEEEES
T ss_pred             CCCEEeCCCCeEEEcCCCcEEEEECCCC-----cEEEecCCcce-----eeecCCC---ceEEEeccCHHhCeEEEEEee
Confidence            4677777788889999999999999876     69999998866     1122222   489999999999999999999


Q ss_pred             CCCCceeeeeEEEEEeCCCCcCCCceeeccceeeecCCeEEEEEEEecCCC-CeEEEE-ECCEEcCCCCeEEEe------
Q psy16863        629 SSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPT-PTLQWF-KDNEELKPGDVYQLT------  700 (1075)
Q Consensus       629 n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~l~C~v~g~p~-p~v~W~-k~g~~l~~~~~~~~~------  700 (1075)
                      |  |.  .....+.|..++...    .......+.+|+.+.|.|.+.+ |. +.++|+ ++|..+..+.++.+.      
T Consensus        78 n--g~--~~~~~l~V~~~~~~~----~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~  148 (290)
T 2o26_X           78 N--GL--TSSIYVFVRDPAKLF----LVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNPKAGIT  148 (290)
T ss_dssp             S--SC--EEEEEEEEECSSCCB----CCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEETTTEEE
T ss_pred             C--Cc--cEEEEEEEeCCCccc----ccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCCCCCEE
Confidence            9  54  344667777654321    2222334668999999999986 77 899995 688887665554432      


Q ss_pred             ----ecCCCc-eEEEEEEecCceEEE-EEEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEec
Q psy16863        701 ----GTSSLG-SYCCVAKNVMGKAES-STQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSI  774 (1075)
Q Consensus       701 ----~~~d~G-~Y~C~a~N~~g~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g  774 (1075)
                          ..+|.| .|+|.|.|..|...+ .+.|.|....              ..+|.|...+....+..|+.+.|.|.+.|
T Consensus       149 i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~--------------~~~P~i~~~~~~~~v~~G~~v~l~C~~~g  214 (290)
T 2o26_X          149 IKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAI--------------KAIPVVSVPETSHLLKKGDTFTVVCTIKD  214 (290)
T ss_dssp             EESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCC--------------CSCCEEECSCSBCCCCTTCCEEEEEEEEE
T ss_pred             EecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCC--------------CCCCccccCCCcceEecCCcEEEEEEEec
Confidence                237899 999999998665443 4777776311              25888887777778999999999999999


Q ss_pred             CCCCe-EEEEECCEEe----ecCCcEEEEE--eeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEec
Q psy16863        775 SPEPK-VSWFRDDQQV----VESDNVKILK--ETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP  842 (1075)
Q Consensus       775 ~p~p~-v~W~k~g~~i----~~~~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~  842 (1075)
                      .|.|. ++|+|+|..+    .......+..  .......|.|.+++.+|+|.|+|.|.|.+|....++.|.|..+
T Consensus       215 ~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~  289 (290)
T 2o26_X          215 VSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEK  289 (290)
T ss_dssp             SSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC---
T ss_pred             CCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEeC
Confidence            99996 9999999873    3333322221  1122458999999999999999999999999988888888754

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.96  E-value=5.1e-28  Score=258.73  Aligned_cols=232  Identities=20%  Similarity=0.269  Sum_probs=178.9

Q ss_pred             eeecCCeEEEEEEEec-CCCC--eEEEEECCEEcCC-----CCeEEEeec-----CCCce--EEEEEEecCceEEEEEEE
Q psy16863        661 VMTDDGLVSFECKVVG-FPTP--TLQWFKDNEELKP-----GDVYQLTGT-----SSLGS--YCCVAKNVMGKAESSTQL  725 (1075)
Q Consensus       661 ~~~~g~~~~l~C~v~g-~p~p--~v~W~k~g~~l~~-----~~~~~~~~~-----~d~G~--Y~C~a~N~~g~~~~~~~l  725 (1075)
                      .+.+|+.++|.|.+.| .|.|  .++|+|+|..+..     +..+.+...     .|.|.  |+|.|.|..|....++.|
T Consensus        14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~~~l   93 (265)
T 2oz4_A           14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTV   93 (265)
T ss_dssp             EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCCEEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEEEEE
T ss_pred             eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCceEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCcEEEEEE
Confidence            6778999999999998 7877  9999999998753     334444332     67774  999999999998888999


Q ss_pred             EEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEE
Q psy16863        726 TIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVC  805 (1075)
Q Consensus       726 ~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~  805 (1075)
                      .|...                .+|.+.  +....+.+|+.+.|.|.+.  |.|.++|  +|.++....         ...
T Consensus        94 ~V~~~----------------p~p~~~--~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~---------~~~  142 (265)
T 2oz4_A           94 TIYSF----------------PAPNVI--LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG---------PRA  142 (265)
T ss_dssp             EEECC----------------CCCEEE--ESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCS---------SEE
T ss_pred             EEeCC----------------CCceee--cCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCC---------CcE
Confidence            98742                134444  3456688999999999998  9999999  888774322         235


Q ss_pred             EEEEccccCCCCeEEEEEEEeCC-ceEE---EEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCCeeEEE
Q psy16863        806 HLKIHALEVADQAEWKCIATNDF-GQSI---TSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWF  881 (1075)
Q Consensus       806 ~L~I~~~~~~D~G~Y~C~A~N~~-G~~~---~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~v~W~  881 (1075)
                      .|.|..+..+|+|.|+|.|.|.. |...   .++.|.|..+|.+....  .+....+.+|+.++|.|.+.|.|.|.++|+
T Consensus       143 ~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~--~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~  220 (265)
T 2oz4_A          143 QLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERD--CPGNWTWPENSQQTPMCQAWGNPLPELKCL  220 (265)
T ss_dssp             CCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGG--SCSEEEEETTCEECCCCCCEEESCCEEEEE
T ss_pred             EEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCcccccc--CCCccEEcCCCeEEEEeECccCCCCeEEEE
Confidence            78999999999999999998644 7765   67788888766542211  111234778999999999999999999999


Q ss_pred             ECCEEcCCCCeeEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEec
Q psy16863        882 KDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFE  929 (1075)
Q Consensus       882 k~g~~l~~~~~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~  929 (1075)
                      |+|..+.......  .  ....|+|.|+|.|.|.+|.++.++.|.|..
T Consensus       221 ~~~~~~~~~g~~~--~--v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  264 (265)
T 2oz4_A          221 KDGTFPLPIGESV--T--VTRDLEGTYLCRARSTQGEVTREVTVNVLS  264 (265)
T ss_dssp             ETTTEECCTTSCE--E--CCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             ECCcccCCCCcEE--E--eehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence            9997443332221  1  445789999999999999999999998864

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.96  E-value=1.5e-28  Score=271.86  Aligned_cols=244  Identities=13%  Similarity=0.196  Sum_probs=185.1

Q ss_pred             eeecCCeEEEEEEEecC---------CCCeEEEEECCEEcCC------CCeEEEe--ecCCCc-eEEEEEEecCceEEEE
Q psy16863        661 VMTDDGLVSFECKVVGF---------PTPTLQWFKDNEELKP------GDVYQLT--GTSSLG-SYCCVAKNVMGKAESS  722 (1075)
Q Consensus       661 ~~~~g~~~~l~C~v~g~---------p~p~v~W~k~g~~l~~------~~~~~~~--~~~d~G-~Y~C~a~N~~g~~~~~  722 (1075)
                      ++.+|+.+.|.|.+.+.         |.+.++|+|++..+..      +..+.+.  ..+|+| .|+|.|.|..|.....
T Consensus        40 ~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~  119 (329)
T 3oq3_B           40 MAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQG  119 (329)
T ss_dssp             EECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTTEETTEEEESSCCGGGGGCCEEEEEECTTSCEEEE
T ss_pred             EEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCceeecceEEEcCCChHhCCCcEEEEEEeCCCceeeE
Confidence            46789999999999884         5579999999876543      2344443  346999 9999999999875554


Q ss_pred             EEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecCC-CCeEEEEECCEEeec-CCcEEEEEe
Q psy16863        723 TQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISP-EPKVSWFRDDQQVVE-SDNVKILKE  800 (1075)
Q Consensus       723 ~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p-~p~v~W~k~g~~i~~-~~~~~~~~~  800 (1075)
                      ..+.|..                 .+|.+........+.+|+.+.|.|.+.|.| .|.++|+|+|..+.. ..++...  
T Consensus       120 ~~~~v~~-----------------~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~--  180 (329)
T 3oq3_B          120 IVRSHIR-----------------KPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS--  180 (329)
T ss_dssp             EEEEEEC-----------------CCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEE--
T ss_pred             EEEEEEc-----------------CCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecC--
Confidence            4334432                 355555544445577899999999999999 999999999999863 3344432  


Q ss_pred             eCcEEEEEEccccCCCCeEEEEEEEeC--CceEEEE----EEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccC
Q psy16863        801 TLGVCHLKIHALEVADQAEWKCIATND--FGQSITS----CFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVP  874 (1075)
Q Consensus       801 ~~~~~~L~I~~~~~~D~G~Y~C~A~N~--~G~~~~s----~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p  874 (1075)
                       .  ..|.|.+++.+|+|.|+|.|.|.  .|.....    +.|.|..++....|.+ .+....+.+|+.++|.|.+.|.|
T Consensus       181 -~--~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~~~~~v~~G~~~~l~C~~~g~p  256 (329)
T 3oq3_B          181 -G--QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-LDPKINVTIGEPANITCTAVSTS  256 (329)
T ss_dssp             -T--TEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-CCSEEEECTTSCEEEEEEEEETT
T ss_pred             -C--CEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-cCCeeEEecCCCEEEEEEEEECC
Confidence             2  37999999999999999999997  6654333    6677776553333333 33334578999999999999998


Q ss_pred             ---CC-eeEEEECCEEc-CCCC-------------eeEEEECCCCceeeE-EEEEEEEeCCeeEEEEEEEEE
Q psy16863        875 ---QP-TLKWFKDGREL-KAGD-------------IHKIISGEDGTCCLG-IYTCEAHNCMGTTSSSAALLG  927 (1075)
Q Consensus       875 ---~p-~v~W~k~g~~l-~~~~-------------~~~i~~~~~~~~d~G-~Y~C~a~N~~G~~~~~~~l~v  927 (1075)
                         .| .|+|+|||.++ ..+.             ...|.+......|+| .|+|.|.|.+|..+.++.|.|
T Consensus       257 ~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          257 LLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             CCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred             CCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence               67 88999999885 3332             345777888889999 999999999999999888775

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.96  E-value=1e-27  Score=260.48  Aligned_cols=274  Identities=18%  Similarity=0.234  Sum_probs=205.5

Q ss_pred             cccceeecceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCCCceeccCcEEEEecCCeEEEEEceeccCCCe
Q psy16863        135 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGG  214 (1075)
Q Consensus       135 ~p~~~~~~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G  214 (1075)
                      +|.+...+.+..+.+|++++|.|.+.+              .+.|++++...     .......+...|.|.+++.+|+|
T Consensus         4 ~p~i~~~~~~~~v~~G~~v~L~C~~~~--------------~v~W~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G   64 (289)
T 3ejj_X            4 APVIEPSGPELVVEPGETVTLRCVSNG--------------SVEWDGPISPY-----WTLDPESPGSTLTTRNATFKNTG   64 (289)
T ss_dssp             CCEEESCSSEEEECTTCCEEEEEECSS--------------CCEEECSCSSS-----SEECCCSSCCEEEESSCCGGGCE
T ss_pred             CcEecCCCceEEECCCCCEEEEEEeCC--------------cEEEccCCCce-----EEEeccCCccEEEEeeeccccCE
Confidence            455656667888999999999998754              36888766432     12223344568999999999999


Q ss_pred             EEEEEEEcCceeEEEEEEEeeeccCCCCCccccccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCccc
Q psy16863        215 RYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPI  294 (1075)
Q Consensus       215 ~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~~  294 (1075)
                      .|+|.|.|..|..+..+.|.|..  + +..+...+....+.+|+.+.|.|.+.+..         .+..+.|++.++..+
T Consensus        65 ~Y~C~~~~~~~~~~~~~~l~V~~--~-~~~~~~~~~~~~v~~g~~v~L~C~~~~~~---------~~~~v~W~~~~~~~~  132 (289)
T 3ejj_X           65 TYRCTELEDPMAGSTTIHLYVKD--P-AHSWNLLAQEVTVVEGQEAVLPCLITDPA---------LKDSVSLMREGGRQV  132 (289)
T ss_dssp             EEEEECCC-----CEEEEEEECC--S-SCSEEESCSEEEEETTSCEEECEEESCGG---------GGGSEEEEEGGGEEC
T ss_pred             EEEEEEeccCCcceeEEEEEEeC--C-CcceecccceEEEecCCceEeEEEccCCC---------cceEEEEEecCCeec
Confidence            99999999988888888888863  1 12256666888899999999988876432         122388987666665


Q ss_pred             c-CCCeEEEeeCCeEEEEEcccCCCCCEEEEEEEE-eCCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEE
Q psy16863        295 F-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTAS-NESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVE  372 (1075)
Q Consensus       295 ~-~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~-n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~  372 (1075)
                      . ..++.+...+   .|.|.+++.+|+|.|+|.|. |..+..+..+.|.|......+|.+...+....+.+|+++.|.|.
T Consensus       133 ~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~  209 (289)
T 3ejj_X          133 LRKTVYFFSPWR---GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCS  209 (289)
T ss_dssp             CTTCCEEEETTT---EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEE
T ss_pred             CCCccEEECCCC---CEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEE
Confidence            5 5555554332   69999999999999999999 55566777888888865556888888888888899999999999


Q ss_pred             Eec-CCCcEEEEEECCEecCCCCcEEEEEc--CCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeecC
Q psy16863        373 IRS-PTEIKIHWYRNDRKLEENKIYRTQHD--GNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP  442 (1075)
Q Consensus       373 ~~g-~p~~~v~W~k~g~~l~~~~~~~~~~~--g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~  442 (1075)
                      +.+ .|.+.|.|+|+|..+...........  .....|.|.+++.+|+|.|+|.|.|..|....++.|.+...
T Consensus       210 ~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~  282 (289)
T 3ejj_X          210 ATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVES  282 (289)
T ss_dssp             EEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC--
T ss_pred             eCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEec
Confidence            988 78999999999998876533222111  11357999999999999999999999999999988877654

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.96  E-value=1.4e-29  Score=281.48  Aligned_cols=271  Identities=20%  Similarity=0.332  Sum_probs=135.3

Q ss_pred             eeecCceeeccCCeEEEEEEEecC-CCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCce
Q psy16863        353 IRRLHDIAVKVGTRARLLVEIRSP-TEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS  431 (1075)
Q Consensus       353 ~~~~~~~~v~~G~~v~l~C~~~g~-p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~  431 (1075)
                      +..+.+..+.+|++++|.|.+.+. |.+.|+|+|+|..+..+.++.+.    ...|.|.+++.+|+|.|+|.|.|. |..
T Consensus        12 ~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~n~-~~~   86 (334)
T 1ry7_B           12 PGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVG----PQRLQVLNASHEDSGAYSCRQRLT-QRV   86 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEec----cceEEEeecccccCEEEEEEEEeC-CeE
Confidence            334778899999999999999876 57899999999998776665542    236899999999999999999999 777


Q ss_pred             eeEEEEEeecCCCC-----------------CCCeeeeec-----ceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccC
Q psy16863        432 HCSCELSVLVPKAY-----------------KAPFFTKEL-----EAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA  489 (1075)
Q Consensus       432 ~~s~~l~V~~~~~~-----------------~~p~~~~~~-----~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~  489 (1075)
                      ...+.|.|...+..                 .+|.+..+.     ...+.+|+.+.|.|.+.|.|.+.|.|+|+|..+..
T Consensus        87 ~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~  166 (334)
T 1ry7_B           87 LCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRG  166 (334)
T ss_dssp             --------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCT
T ss_pred             EEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcc
Confidence            77777777654321                 133333221     13477899999999999999999999999998865


Q ss_pred             CC----------EEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeee-eecc
Q psy16863        490 GD----------IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFI-KEVE  558 (1075)
Q Consensus       490 ~~----------~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  558 (1075)
                      ..          ...|.|..+...|+|.|+|.|.|..|.....+.|.|.....                .+|.+. ..+.
T Consensus       167 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~----------------~~p~~~~~~~~  230 (334)
T 1ry7_B          167 EHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP----------------HRPILQAGLPA  230 (334)
T ss_dssp             TSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCC----------------SSCBCCTTCSC
T ss_pred             cccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCC----------------CCCceEecCCC
Confidence            43          23799999999999999999999999998888888874211                122222 2346


Q ss_pred             ceEeecCCeEEEEEEEecCCCCceEEEEe----CCeEEecCCcE--EEEEcC------CceEEEEEeeeeecCCceEEEE
Q psy16863        559 NVKAKIGTSAILECQVLVPPWPRSIYWYN----KEGVVEASDKY--HIMADG------LGGYSIEINYLEAVDDGEWKCV  626 (1075)
Q Consensus       559 ~~~v~~G~~~~L~C~~~~~p~p~~v~W~~----~~~~i~~~~~~--~~~~~~------~~~~~L~i~~~~~~d~G~Y~C~  626 (1075)
                      ...+.+|+.++|.|.+.+.|.| .+.|++    ++..+......  .+...+      .....|.|.+++.+|+|.|+|.
T Consensus       231 ~~~~~~G~~v~l~C~~~g~p~p-~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  309 (334)
T 1ry7_B          231 NQTAVLGSDVEFHCKVYSDAQP-HIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCL  309 (334)
T ss_dssp             CEEEESSCCEEECCCCBCSSCE-EEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEE
T ss_pred             ceEEeCCCCEEEEEEEecCCCC-eEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEE
Confidence            6788999999999999999877 899999    56555433321  111111      0123799999999999999999


Q ss_pred             EECCCCceeeeeEEEEEeCC
Q psy16863        627 ATSSSGVKQFSAAYVHVLMP  646 (1075)
Q Consensus       627 a~n~~g~~~~~~~~l~v~~p  646 (1075)
                      |.|..|.... ...|.|...
T Consensus       310 a~N~~G~~~~-~~~l~V~~~  328 (334)
T 1ry7_B          310 AGNSIGFSHH-SAWLVVLPA  328 (334)
T ss_dssp             EEESSCCEEE-EEEEEEECS
T ss_pred             EeCCCCeEEE-EEEEEEEEC
Confidence            9999998764 456666543

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.96  E-value=1.8e-27  Score=254.31  Aligned_cols=251  Identities=17%  Similarity=0.210  Sum_probs=196.3

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCc-EEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEI-KIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      .|.|...+.+..+.+|+.+.|.|.+.+.|.+ .|+|+|+|..+....          ..|.|.+++.+|+|.|+|.|.|.
T Consensus         1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~~----------~~l~i~~~~~~d~G~Y~C~~~~~   70 (262)
T 3rjd_A            1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST----------PSYRITSASVNDSGEYRCQRGLS   70 (262)
T ss_dssp             CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCCS----------SEEEESSCCGGGCEEEEEEESSS
T ss_pred             CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeeccC----------CeEEEecCCcccCeEEEEEEecC
Confidence            3667777788899999999999999888877 999999999886542          24889999999999999999987


Q ss_pred             CCceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEE-ECCCCCeEEEEeCCEeccCCC-EEEEEeCCCCCCCc
Q psy16863        428 VGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKV-MGIPTPQLIWYKDNKKIKAGD-IFALTANPKDPSSL  505 (1075)
Q Consensus       428 ~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~v~W~~~g~~l~~~~-~~~l~i~~~~~~d~  505 (1075)
                      .+..  .+.|.|..++     .........+.+|+.+.|.|.+ .+.|.+.+.|+++|..+.... ...|.|..+..+|+
T Consensus        71 ~~s~--~~~l~v~~~~-----~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~~~~~l~i~~~~~~d~  143 (262)
T 3rjd_A           71 GRSD--PIQLEIHRGW-----LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHN  143 (262)
T ss_dssp             CCCC--CEEEEEECSS-----EEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGC
T ss_pred             Cccc--cEEEEEeccc-----eEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccccCCCCeEEEEECChhhC
Confidence            6544  4566666432     3344444557899999999999 677888999999999986533 34689999999999


Q ss_pred             EEEEEEEEecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEecCCC-Cc---
Q psy16863        506 GTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPW-PR---  581 (1075)
Q Consensus       506 G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~-p~---  581 (1075)
                      |.|+|.|.|..+.......|.|...                 .++|.+...+ ...+.+|+.++|.|.+.+.|. |.   
T Consensus       144 G~Y~C~~~n~~~~~~~~~~l~V~~~-----------------~~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~  205 (262)
T 3rjd_A          144 GTYHCSGMGKHRYTSAGISVTVKEL-----------------FPAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQL  205 (262)
T ss_dssp             EEEEEEEESSSEEEEECEEEEEECS-----------------SCCCEEEESS-CSSEETTCCEEEEEECCCCCC-----E
T ss_pred             EEEEEEEeCCCCccccceEEEeccC-----------------CCCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCccE
Confidence            9999999999988888888888731                 1244444433 566889999999999999875 32   


Q ss_pred             eEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEE
Q psy16863        582 SIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV  643 (1075)
Q Consensus       582 ~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v  643 (1075)
                      .+.|++++..+...       .  ....|.|.++..+|+|.|+|.|.|..|.....+..+.+
T Consensus       206 ~~~w~~~~~~~~~~-------~--~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~~~s~~~~l  258 (262)
T 3rjd_A          206 YFSFYMGSKTLRGR-------N--TSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELEL  258 (262)
T ss_dssp             EEEEEETTEEEEEE-------E--SCCEEEESSCCGGGCEEEEEEEEETTSSCEEECCCEEE
T ss_pred             EEEEEeCCcEeccc-------C--CCceEEEEEechhhCeEEEEEEEcccCceEEecCCeEE
Confidence            47899999877532       1  22489999999999999999999999976444434444

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.96  E-value=1.5e-27  Score=258.96  Aligned_cols=262  Identities=13%  Similarity=0.159  Sum_probs=182.2

Q ss_pred             ccceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceee
Q psy16863        557 VENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQF  636 (1075)
Q Consensus       557 ~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  636 (1075)
                      .....+.+|+.++|.|.+.+.     +.|++++..+.  .+.....++.....|.|.+++.+|+|.|+|.|.|..|....
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~-----v~W~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~   79 (289)
T 3mjg_X            7 GPELVLNVSSTFVLTCSGSAP-----VVWERMSQEPP--QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETD   79 (289)
T ss_dssp             CSEEECCTTCCEEEEEEESSC-----CEEEBTTBCCS--EEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------C
T ss_pred             CCeEEEeCCCcEEEEEeccce-----EEEECCCCCcc--cceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcC
Confidence            445778899999999998763     99999998763  22222223322468999999999999999999998876332


Q ss_pred             eeEEEEEeCCCCcCCCceeeccc---eeeecCCeEEEEEEEecCCCCeEEEEECC--EEcCC--CCeEEEeecCCCceEE
Q psy16863        637 SAAYVHVLMPKNYRKPRFVESLK---AVMTDDGLVSFECKVVGFPTPTLQWFKDN--EELKP--GDVYQLTGTSSLGSYC  709 (1075)
Q Consensus       637 ~~~~l~v~~p~~~~~p~~~~~~~---~~~~~g~~~~l~C~v~g~p~p~v~W~k~g--~~l~~--~~~~~~~~~~d~G~Y~  709 (1075)
                      ....+.|.+... ..|.+.....   ..+.+|+.+.|.|.+. .|.|.++|++++  ..+..  .....+....|+|.|+
T Consensus        80 ~~~~~~v~v~~p-~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~~~~~~~~~~~~d~G~Y~  157 (289)
T 3mjg_X           80 ERKRLYIFVPDP-TVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYI  157 (289)
T ss_dssp             CCEEEEEECCCT-TCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCCEETTTEEEECCCSSEEE
T ss_pred             cEEeEEEEEECC-CcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccceeecCCcCeeeeccCcEEE
Confidence            334455544321 1122111111   3467889999999998 688899999864  33221  1111223457999999


Q ss_pred             EEEEecCceEEEE-EEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEE
Q psy16863        710 CVAKNVMGKAESS-TQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQ  788 (1075)
Q Consensus       710 C~a~N~~g~~~~~-~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~  788 (1075)
                      |.|.|..+...+. +.|.|...                .+|.+...+....+.+|+++.|.|.+.|.|.|.++|+|+++.
T Consensus       158 C~a~n~~~~~~s~~~~l~v~~~----------------~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~  221 (289)
T 3mjg_X          158 CKTTIGDREVDSDAYYVYRLQV----------------SSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKE  221 (289)
T ss_dssp             EEEEETTEEEECCCEEEEECCC----------------CCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSS
T ss_pred             EEEEeCCceeeeeeEEEEecCC----------------CCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCcc
Confidence            9999987765543 45555421                366666666667799999999999999999999999998765


Q ss_pred             eecCCcEEEEEe----eCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEecC
Q psy16863        789 VVESDNVKILKE----TLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPK  843 (1075)
Q Consensus       789 i~~~~~~~~~~~----~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~  843 (1075)
                      +...........    ......|.|.+++.+|+|.|+|.|.|.+|....++.|.|...+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~  280 (289)
T 3mjg_X          222 SGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVE  280 (289)
T ss_dssp             SSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC
T ss_pred             CCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEe
Confidence            433222111111    1135689999999999999999999999999999999998754

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.95  E-value=3.1e-27  Score=261.43  Aligned_cols=259  Identities=15%  Similarity=0.201  Sum_probs=187.4

Q ss_pred             eeccceEeecCCeEEEEEEEecCCC--------CceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCc-eEEE
Q psy16863        555 KEVENVKAKIGTSAILECQVLVPPW--------PRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDG-EWKC  625 (1075)
Q Consensus       555 ~~~~~~~v~~G~~~~L~C~~~~~p~--------p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C  625 (1075)
                      ....++.+.+|+.+.|.|.+.+.+.        +..+.|++++..+....+.  ...+    .|.|.+++.+|+| .|+|
T Consensus        34 ~~~~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~--~~~~----~L~i~~v~~~D~Gs~Y~C  107 (329)
T 3oq3_B           34 GGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR--VKNG----DLWIANYTSNDSHRRYLC  107 (329)
T ss_dssp             EEEEEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT--EETT----EEEESSCCGGGGGCCEEE
T ss_pred             CCcceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce--eecc----eEEEcCCChHhCCCcEEE
Confidence            3346777999999999999988532        2389999999877654443  2233    8999999999999 9999


Q ss_pred             EEECCCCceeeeeEEEEEeCCCCcCCCceeecc-ceeeecCCeEEEEEEEecCC-CCeEEEEECCEEcCC-CCeE-----
Q psy16863        626 VATSSSGVKQFSAAYVHVLMPKNYRKPRFVESL-KAVMTDDGLVSFECKVVGFP-TPTLQWFKDNEELKP-GDVY-----  697 (1075)
Q Consensus       626 ~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~-~~~~~~g~~~~l~C~v~g~p-~p~v~W~k~g~~l~~-~~~~-----  697 (1075)
                      .|.|..|........+.+..|+     .+.... ...+.+|+.+.|.|.+.|.| .|.++|+|++..+.. +.++     
T Consensus       108 ~a~n~~g~~~~~~~~~v~~~~p-----~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~~~  182 (329)
T 3oq3_B          108 TVTTKNGDCVQGIVRSHIRKPP-----SCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQ  182 (329)
T ss_dssp             EEECTTSCEEEEEEEEEECCCC-----SCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEETT
T ss_pred             EEEeCCCceeeEEEEEEEcCCC-----cEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecCCC
Confidence            9999998755433333444342     222211 12245688999999999999 899999999999853 2233     


Q ss_pred             --EEe--ecCCCceEEEEEEec--CceEEEE----EEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCeEE
Q psy16863        698 --QLT--GTSSLGSYCCVAKNV--MGKAESS----TQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFK  767 (1075)
Q Consensus       698 --~~~--~~~d~G~Y~C~a~N~--~g~~~~~----~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  767 (1075)
                        .+.  ..+|+|.|+|.|.|.  .|.....    +.|.|...+..             ..| ++ .+....+..|+.+.
T Consensus       183 ~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~-------------~~~-~~-~~~~~~v~~G~~~~  247 (329)
T 3oq3_B          183 NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDH-------------RFK-LI-LDPKINVTIGEPAN  247 (329)
T ss_dssp             EEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCC-------------CEE-EE-CCSEEEECTTSCEE
T ss_pred             EEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCC-------------CCc-ee-cCCeeEEecCCCEE
Confidence              332  237999999999997  6544333    66777642100             002 22 55567899999999


Q ss_pred             EEEEEecCC---CC-eEEEEECCEEe-ecCCcEEEEE-eeC--cEEEEEEccccCCCCe-EEEEEEEeCCceEEEEEEEE
Q psy16863        768 FTVQVSISP---EP-KVSWFRDDQQV-VESDNVKILK-ETL--GVCHLKIHALEVADQA-EWKCIATNDFGQSITSCFLK  838 (1075)
Q Consensus       768 l~C~v~g~p---~p-~v~W~k~g~~i-~~~~~~~~~~-~~~--~~~~L~I~~~~~~D~G-~Y~C~A~N~~G~~~~s~~l~  838 (1075)
                      |.|.+.|.|   .| .+.|+|+|..+ ..+.+..... ...  ....|.|.+++.+|+| .|+|.|.|.+|....++.|.
T Consensus       248 l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~  327 (329)
T 3oq3_B          248 ITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVV  327 (329)
T ss_dssp             EEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEE
T ss_pred             EEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEE
Confidence            999999998   77 89999999985 3333332221 111  3568999999999999 99999999999998888776


Q ss_pred             E
Q psy16863        839 L  839 (1075)
Q Consensus       839 V  839 (1075)
                      |
T Consensus       328 v  328 (329)
T 3oq3_B          328 L  328 (329)
T ss_dssp             E
T ss_pred             e
Confidence            6

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.95  E-value=4.3e-29  Score=273.96  Aligned_cols=260  Identities=20%  Similarity=0.249  Sum_probs=182.8

Q ss_pred             ceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEec-----------------CCcEEEEEcCCceEEEEEeeeeecCCc
Q psy16863        559 NVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEA-----------------SDKYHIMADGLGGYSIEINYLEAVDDG  621 (1075)
Q Consensus       559 ~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~-----------------~~~~~~~~~~~~~~~L~i~~~~~~d~G  621 (1075)
                      ++.+.+|++++|.|.+.+.+.+..++|+|++.....                 ..++.+.....+..+|.|.+++.+|+|
T Consensus         8 ~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G   87 (308)
T 4fom_A            8 HVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSG   87 (308)
T ss_dssp             SCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCE
T ss_pred             EeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCE
Confidence            467889999999999876655557999986543211                 112222222223457999999999999


Q ss_pred             eEEEEEECCCCceeeeeEEEEEeCCCCcCCCceeeccceeeecCCeEEEEEEE-ecCCCCeEEEEECCEEcCCCC-----
Q psy16863        622 EWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKV-VGFPTPTLQWFKDNEELKPGD-----  695 (1075)
Q Consensus       622 ~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~l~C~v-~g~p~p~v~W~k~g~~l~~~~-----  695 (1075)
                      .|+|.|.|..+........+.+..++..  +.+..........++.+.|.|.+ .|.|.|.++|+|++..+....     
T Consensus        88 ~Y~C~a~n~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~  165 (308)
T 4fom_A           88 KYICKAVTFPLGNAQSSTTVTVLVEPTV--SLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPN  165 (308)
T ss_dssp             EEEEEEEETTTEEEEEEEEEEEEBCCEE--EEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTT
T ss_pred             EEEEEEeeCCCcceeeeeEEEeeecccc--ccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeee
Confidence            9999999875444434455666554321  11222222234456789999975 588999999999988775321     


Q ss_pred             -e------EEEe--ecCCCceEEEEEEecCceEEEE--EEEEEEeccccCchhhhhhhccCCCCCeEEec-cceeeeecC
Q psy16863        696 -V------YQLT--GTSSLGSYCCVAKNVMGKAESS--TQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEG-LKSCQATVN  763 (1075)
Q Consensus       696 -~------~~~~--~~~d~G~Y~C~a~N~~g~~~~~--~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~g  763 (1075)
                       .      +.+.  ...|.|.|+|.|.|..|....+  +.|.|.                  .+|.+... .....+..|
T Consensus       166 ~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~------------------~~P~~~~~~~~~~~~~~g  227 (308)
T 4fom_A          166 ETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQ------------------YAPEVSVTGYDGNWFVGR  227 (308)
T ss_dssp             SCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCC------------------EEEEECCBCCCSCEETTC
T ss_pred             ecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEe------------------cCCeeEEcccceeeeecc
Confidence             1      2222  2368999999999988775544  444443                  35555433 334556778


Q ss_pred             CeEEEEEEEecCCCC-eEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEec
Q psy16863        764 EEFKFTVQVSISPEP-KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP  842 (1075)
Q Consensus       764 ~~~~l~C~v~g~p~p-~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~  842 (1075)
                      +.++|.|.+.|.|.| .++|+|+|..+......     . +...|.|.+++.+|+|.|+|.|.|.+|.+++++.|.|..|
T Consensus       228 ~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~~-----~-~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~  301 (308)
T 4fom_A          228 KGVNLKCNADANPPPFKSVWSRLDGQWPDGLLA-----S-DNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDP  301 (308)
T ss_dssp             CSCEEECCEEEESCEEEEECCBSSSCCCSSCBC-----S-TTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECC
T ss_pred             ccEEEEEEEecCCCCcEEEEEECCeECCCcEEE-----c-CCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcC
Confidence            999999999999988 69999999888654321     1 2346789999999999999999999999999999999987


Q ss_pred             CC
Q psy16863        843 KH  844 (1075)
Q Consensus       843 ~~  844 (1075)
                      |.
T Consensus       302 P~  303 (308)
T 4fom_A          302 PH  303 (308)
T ss_dssp             C-
T ss_pred             CC
Confidence            64

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.95  E-value=4.4e-26  Score=267.29  Aligned_cols=358  Identities=15%  Similarity=0.161  Sum_probs=213.9

Q ss_pred             ccceEeecCCeEEEEEEEecCCCC---ceEEEEeCC--eE---Ee-------------cCCcEEEEEcC-CceEEEEEee
Q psy16863        557 VENVKAKIGTSAILECQVLVPPWP---RSIYWYNKE--GV---VE-------------ASDKYHIMADG-LGGYSIEINY  614 (1075)
Q Consensus       557 ~~~~~v~~G~~~~L~C~~~~~p~p---~~v~W~~~~--~~---i~-------------~~~~~~~~~~~-~~~~~L~i~~  614 (1075)
                      +..+.+.+|+.++|.|.+.+.+..   ..+.||+..  ..   +.             ...++.+..+. .+.++|+|.+
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   86 (512)
T 1zvo_C            7 SGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLRS   86 (512)
T ss_pred             CCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEECc
Confidence            456778899999999999875431   379999852  21   10             12456655432 2357999999


Q ss_pred             eeecCCceEEEEEECCCC----------ce--eeeeEEEEEeCCCCcCCCceee-cc-ceeeecCCeEEEEEEEecC-CC
Q psy16863        615 LEAVDDGEWKCVATSSSG----------VK--QFSAAYVHVLMPKNYRKPRFVE-SL-KAVMTDDGLVSFECKVVGF-PT  679 (1075)
Q Consensus       615 ~~~~d~G~Y~C~a~n~~g----------~~--~~~~~~l~v~~p~~~~~p~~~~-~~-~~~~~~g~~~~l~C~v~g~-p~  679 (1075)
                      ++.+|+|.|.|.+.+..+          ..  ......|.|...+ ..+|.+.. .. ......++.+.|.|.+.|. |.
T Consensus        87 v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~-~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P~  165 (512)
T 1zvo_C           87 MSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAP-TKAPDVFPIISGCRHPKDNSPVVLACLITGYHPT  165 (512)
T ss_pred             CCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccC-CcCCeEEeccCCcccccCCCeEEEEEEEEeeecC
Confidence            999999999999998743          10  1122355565322 12344331 11 1102245789999999987 76


Q ss_pred             C-eEEEEECCEEcC---------CCCeEEE------eec-CCCceEEEEEEecCceEEEEE-----------EEEEEecc
Q psy16863        680 P-TLQWFKDNEELK---------PGDVYQL------TGT-SSLGSYCCVAKNVMGKAESST-----------QLTIEDIR  731 (1075)
Q Consensus       680 p-~v~W~k~g~~l~---------~~~~~~~------~~~-~d~G~Y~C~a~N~~g~~~~~~-----------~l~V~~~~  731 (1075)
                      | .++|++++....         .+..|.+      ... .+.|.|+|.|.|..|.....+           .+.+...+
T Consensus       166 p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~~pp  245 (512)
T 1zvo_C          166 SVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWRQGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQP  245 (512)
T ss_pred             ceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcCCceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEeCCC
Confidence            5 899999764321         1223322      111 127999999999998766544           22332111


Q ss_pred             ccCchh---------------------------hh------h-hhccCCCCCeE-EeccceeeeecCCeEEEEEEEecCC
Q psy16863        732 NHLSEE---------------------------DK------L-LLLTNNKAPKF-IEGLKSCQATVNEEFKFTVQVSISP  776 (1075)
Q Consensus       732 ~~~~~~---------------------------~~------~-~~~~~~~~p~~-~~~~~~~~~~~g~~~~l~C~v~g~p  776 (1075)
                      .....-                           ..      + .......+|.+ +..+....+..|+.+.|.|.+.|.+
T Consensus       246 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~v~g~~  325 (512)
T 1zvo_C          246 QAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGSD  325 (512)
T ss_pred             chhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEEEeceE
Confidence            000000                           00      0 00001234444 4444445567899999999999863


Q ss_pred             C--CeEEEEECCEEeecCCc-EEEEEeeCc----EEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEE-ecCCCCCC
Q psy16863        777 E--PKVSWFRDDQQVVESDN-VKILKETLG----VCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLN-VPKHYKKP  848 (1075)
Q Consensus       777 ~--p~v~W~k~g~~i~~~~~-~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~-~~~~~~~p  848 (1075)
                      +  ..|+|+|+|+.+..... -......++    ...|.|..+..+|.|.|+|.|.|..+... ...+... ......+|
T Consensus       326 P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~~~~~~~~~~~~~~p  404 (512)
T 1zvo_C          326 LKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RLMALREPAAQAPVKL  404 (512)
T ss_pred             CCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC-ceeEEeecCCCCCCCC
Confidence            3  49999999998652111 011111222    24699999999999999999999988653 3223221 10001234


Q ss_pred             eeeeecceeecCCCeEE-EEEEEEccCCC--eeEEEECCEEcCCCCe-------------e----EEEECCCCceeeEEE
Q psy16863        849 KFLEELKAVLSEGGAVN-LECKVIGVPQP--TLKWFKDGRELKAGDI-------------H----KIISGEDGTCCLGIY  908 (1075)
Q Consensus       849 ~~~~~~~~~~~~g~~~~-L~C~v~g~p~p--~v~W~k~g~~l~~~~~-------------~----~i~~~~~~~~d~G~Y  908 (1075)
                      .+.......  .|+.+. |.|.+.|.+++  .|+|+|||.++..+..             +    .|.+......|.|.|
T Consensus       405 ~v~~~~~~~--~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g~Y  482 (512)
T 1zvo_C          405 SLNLLASSD--PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPATY  482 (512)
T ss_pred             EEEEEccCc--CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCCCEEEEEEEEEECchhcCCCCeE
Confidence            432211111  688899 99999996554  5899999999864321             1    112222222358999


Q ss_pred             EEEEEeCCee
Q psy16863        909 TCEAHNCMGT  918 (1075)
Q Consensus       909 ~C~a~N~~G~  918 (1075)
                      +|.|.|....
T Consensus       483 tC~v~h~~l~  492 (512)
T 1zvo_C          483 TCVVSHEDSR  492 (512)
T ss_pred             EEEEEecCCC
Confidence            9999998754

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.95  E-value=1.6e-27  Score=263.88  Aligned_cols=268  Identities=17%  Similarity=0.198  Sum_probs=182.9

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecC-CCcEEEEEECCEecC---------CCCcEEEEEc-----CCEEEEEEcccC
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSP-TEIKIHWYRNDRKLE---------ENKIYRTQHD-----GNFYFIDLSSVS  413 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p~~~v~W~k~g~~l~---------~~~~~~~~~~-----g~~~~L~I~~v~  413 (1075)
                      ...|...+.++.+.+|+++.|.|.+.+. |.+.|+|||++..+.         ...++....+     +....|.|.+++
T Consensus         3 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~   82 (327)
T 2wng_A            3 ELQVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNIT   82 (327)
T ss_dssp             CCCEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCC
T ss_pred             eeEEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCc
Confidence            3456667788999999999999999887 888999999986431         1124333222     334469999999


Q ss_pred             CCCceeEEEEEEeCCCce-----eeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCC--eEEEEeCCEe
Q psy16863        414 LFDSGRWTCLAENAVGRS-----HCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTP--QLIWYKDNKK  486 (1075)
Q Consensus       414 ~~d~G~Y~C~a~n~~g~~-----~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~--~v~W~~~g~~  486 (1075)
                      .+|+|.|+|.|.|..+..     ...+.|.|..++.  +|.+. .+...+.+|+.+.|.|.+.|.|++  .++|+|+|++
T Consensus        83 ~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~--~p~i~-~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~  159 (327)
T 2wng_A           83 PADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPS--APVVS-GPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNE  159 (327)
T ss_dssp             GGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCC--CCEEE-CCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             cccCeEEEEEeecCCCcceeEeecCcEEEEEEecCC--Cceee-ccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEE
Confidence            999999999999987642     2346777776653  34444 333457889999999999998776  8999999999


Q ss_pred             ccCCC----------EE----EEEeCCCCCCCcEEEEEEEEecceee-EEEEEEEEeccccccCCCCCCcCCCCCCCCCC
Q psy16863        487 IKAGD----------IF----ALTANPKDPSSLGTYTCEAVNCMGAA-FSTSRVIARGQQSFLDNDDVPFNSLMPPGPAP  551 (1075)
Q Consensus       487 l~~~~----------~~----~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~  551 (1075)
                      +..+.          .+    .|.+.....+|+|.|+|.|.|..|.. .......+.               +.. ..+|
T Consensus       160 l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~---------------~~v-~~~P  223 (327)
T 2wng_A          160 LSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLS---------------ETI-RVPP  223 (327)
T ss_dssp             CCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGG---------------GTB-CBCC
T ss_pred             ccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEec---------------ccc-CCCC
Confidence            86432          12    35666666777899999999988763 112222211               001 1234


Q ss_pred             eeeeeccceEeecCCeEEEEEEEecCC-CCceEEEEeCCeEEecCCcEEEEEcCCce----EEEEEeeeeecCCceEEEE
Q psy16863        552 IFIKEVENVKAKIGTSAILECQVLVPP-WPRSIYWYNKEGVVEASDKYHIMADGLGG----YSIEINYLEAVDDGEWKCV  626 (1075)
Q Consensus       552 ~~~~~~~~~~v~~G~~~~L~C~~~~~p-~p~~v~W~~~~~~i~~~~~~~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~  626 (1075)
                      .+...+..  +.+|+.++|.|.+.+.+ .+..|.|+++|..+.......+..++.+.    ..|.|..+..+|+|.|+|.
T Consensus       224 ~i~~~~~~--~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~  301 (327)
T 2wng_A          224 TLEVTQQP--VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQ  301 (327)
T ss_dssp             EEEEEEEC--CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEE
T ss_pred             EEEEecCC--cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEE
Confidence            44443333  78999999999999954 33489999999988654322233333333    3588999999999999999


Q ss_pred             EECCCCceeee
Q psy16863        627 ATSSSGVKQFS  637 (1075)
Q Consensus       627 a~n~~g~~~~~  637 (1075)
                      |.|..|.....
T Consensus       302 a~N~~~~~~s~  312 (327)
T 2wng_A          302 VEHDGQPAVSK  312 (327)
T ss_dssp             EEETTCCCEEE
T ss_pred             EEeCCCCCchh
Confidence            99999876543

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.95  E-value=4.4e-28  Score=271.16  Aligned_cols=268  Identities=15%  Similarity=0.229  Sum_probs=164.3

Q ss_pred             ccceEeecCCeEEEEEEEecCCC-----------CceEEEEeCCeE----EecC---CcEEEEEcCCceEEEEEeeeeec
Q psy16863        557 VENVKAKIGTSAILECQVLVPPW-----------PRSIYWYNKEGV----VEAS---DKYHIMADGLGGYSIEINYLEAV  618 (1075)
Q Consensus       557 ~~~~~v~~G~~~~L~C~~~~~p~-----------p~~v~W~~~~~~----i~~~---~~~~~~~~~~~~~~L~i~~~~~~  618 (1075)
                      ..++.+.+|+.+.|.|.+.+.|.           + .+.|++++..    ....   ...++...+   ..|.|.+++.+
T Consensus        14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~-~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~   89 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGL-TLIWYWTRQDRDLEEPINFRLPENRISKEK---DVLWFRPTLLN   89 (349)
T ss_dssp             CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTC-EEEEEEEESSCCCEEECCCCCGGGCEEEET---TEEEESSCCGG
T ss_pred             eeeEEEecCCeEEEEccccccccccccccccCCCc-eEEEEECCCCCcccccccccccCceEeecC---CEEEEccCChh
Confidence            46678999999999999997653           5 8999998742    1111   122222222   17999999999


Q ss_pred             CCceEEEEEECCCCceeeeeEEEEEeCCCCcCCCceeeccceeeecCCeEEEEEEE-----ecCCCCeEEEEECCEEcCC
Q psy16863        619 DDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKV-----VGFPTPTLQWFKDNEELKP  693 (1075)
Q Consensus       619 d~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~l~C~v-----~g~p~p~v~W~k~g~~l~~  693 (1075)
                      |+|.|+|.|.|..|.... ...+.|..++....+.+.......+..|+.+.|.|.+     .|.|.|.++|+|++..+..
T Consensus        90 D~G~Y~C~a~n~~~~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~  168 (349)
T 4dep_C           90 DTGNYTCMLRNTTYCSKV-AFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQN  168 (349)
T ss_dssp             GCEEEEEEEECSSCEEEE-EEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCS
T ss_pred             hCEEEEEEEecCCceEEE-EEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCC
Confidence            999999999999887653 4567777665433333322223356678899999985     7789999999999999865


Q ss_pred             CC-------eEEEe--ecCCCceEEEEEEecC-ceE---EEEEEEEEEeccccCchhhhhhhccCCCCCeEEecccee--
Q psy16863        694 GD-------VYQLT--GTSSLGSYCCVAKNVM-GKA---ESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSC--  758 (1075)
Q Consensus       694 ~~-------~~~~~--~~~d~G~Y~C~a~N~~-g~~---~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--  758 (1075)
                      ..       .+.+.  ..+|+|.|+|.|.|.. |..   ...+.|.|...+..            ..+|.+.......  
T Consensus       169 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~------------~~~p~i~~~~~~~~~  236 (349)
T 4dep_C          169 FNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKN------------AVPPVIHSPNDHVVY  236 (349)
T ss_dssp             CSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGG------------CCSCEEC--------
T ss_pred             ccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCC------------CCCCeEecCCCceeE
Confidence            33       34443  3479999999999987 554   45566666532100            1267776665443  


Q ss_pred             eeecCCeEEEEEEEe----cCCCCeEEEEECCEEeec-CCcEEEEE-------e-eCcEEEEEEccccCCCC-eEEEEEE
Q psy16863        759 QATVNEEFKFTVQVS----ISPEPKVSWFRDDQQVVE-SDNVKILK-------E-TLGVCHLKIHALEVADQ-AEWKCIA  824 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~----g~p~p~v~W~k~g~~i~~-~~~~~~~~-------~-~~~~~~L~I~~~~~~D~-G~Y~C~A  824 (1075)
                      .+..|+.+.|.|.+.    |.|.|.+.|+|+|..+.. +.++.+..       . ......|.|.+++.+|+ |.|+|.|
T Consensus       237 ~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a  316 (349)
T 4dep_C          237 EKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHA  316 (349)
T ss_dssp             --------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEE
T ss_pred             EEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEE
Confidence            788999999999999    678999999999998876 33332211       0 01134599999999999 9999999


Q ss_pred             EeCCceEEEEEEEEEEe
Q psy16863        825 TNDFGQSITSCFLKLNV  841 (1075)
Q Consensus       825 ~N~~G~~~~s~~l~V~~  841 (1075)
                      .|.+|....++.|.|..
T Consensus       317 ~N~~G~~~~~~~l~v~~  333 (349)
T 4dep_C          317 RSAKGEVAKAAKVKQKV  333 (349)
T ss_dssp             ECSSCEEEEECC-----
T ss_pred             EcCCCcEEEEEEEeeec
Confidence            99999999998888875

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.95  E-value=7.8e-28  Score=269.15  Aligned_cols=271  Identities=18%  Similarity=0.260  Sum_probs=171.4

Q ss_pred             ecCceeeccCCeEEEEEEEecCCC-----------cEEEEEECCEe------cC---CCCcEEEEEcCCEEEEEEcccCC
Q psy16863        355 RLHDIAVKVGTRARLLVEIRSPTE-----------IKIHWYRNDRK------LE---ENKIYRTQHDGNFYFIDLSSVSL  414 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~~g~p~-----------~~v~W~k~g~~------l~---~~~~~~~~~~g~~~~L~I~~v~~  414 (1075)
                      .+.++.+.+|+++.|.|.+.+.|.           +.|+|+|+|..      +.   ...+  +...+.  .|.|.+++.
T Consensus        13 ~~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~--~~~~~~--~L~i~~~~~   88 (349)
T 4dep_C           13 TMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENR--ISKEKD--VLWFRPTLL   88 (349)
T ss_dssp             CCCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGC--EEEETT--EEEESSCCG
T ss_pred             eeeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCce--EeecCC--EEEEccCCh
Confidence            356788999999999999987654           89999999842      22   1222  223333  589999999


Q ss_pred             CCceeEEEEEEeCCCceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEE-----ECCCCCeEEEEeCCEeccC
Q psy16863        415 FDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKV-----MGIPTPQLIWYKDNKKIKA  489 (1075)
Q Consensus       415 ~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~-----~g~p~~~v~W~~~g~~l~~  489 (1075)
                      +|+|.|+|.|.|..|....++.|.|..++....+.+..+....+.+|+.+.|.|.+     .|.|.+.|+|+|+|.++..
T Consensus        89 ~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~  168 (349)
T 4dep_C           89 NDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQN  168 (349)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCS
T ss_pred             hhCEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCC
Confidence            99999999999999988888999998876544443333333457889999999985     7789999999999999976


Q ss_pred             CCE-----EEEEeCCCCCCCcEEEEEEEEecc-eee---EEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccce
Q psy16863        490 GDI-----FALTANPKDPSSLGTYTCEAVNCM-GAA---FSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENV  560 (1075)
Q Consensus       490 ~~~-----~~l~i~~~~~~d~G~Y~C~a~n~~-g~~---~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (1075)
                      ...     ..|.|..+..+|+|.|+|.|.|.. |..   .....|.|..+...              ..+|.+..++...
T Consensus       169 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~--------------~~~p~i~~~~~~~  234 (349)
T 4dep_C          169 FNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKN--------------AVPPVIHSPNDHV  234 (349)
T ss_dssp             CSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGG--------------CCSCEEC------
T ss_pred             ccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCC--------------CCCCeEecCCCce
Confidence            332     258899999999999999999987 554   45556666532110              1245554444332


Q ss_pred             --EeecCCeEEEEEEEe----cCCCCceEEEEeCCeEEec-CCcEEEEE-------cC-CceEEEEEeeeeecCC-ceEE
Q psy16863        561 --KAKIGTSAILECQVL----VPPWPRSIYWYNKEGVVEA-SDKYHIMA-------DG-LGGYSIEINYLEAVDD-GEWK  624 (1075)
Q Consensus       561 --~v~~G~~~~L~C~~~----~~p~p~~v~W~~~~~~i~~-~~~~~~~~-------~~-~~~~~L~i~~~~~~d~-G~Y~  624 (1075)
                        .+.+|+.++|.|.+.    +.|.| .+.|++++..+.. ..++.+..       .+ .....|.|.++..+|+ |.|+
T Consensus       235 ~~~v~~G~~v~l~C~~~~~~~g~p~p-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~  313 (349)
T 4dep_C          235 VYEKEPGEELLIPCTVYFSFLMDSRN-EVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYV  313 (349)
T ss_dssp             ----------CCCEEEEECCCTTCCC-EEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CE
T ss_pred             eEEEecCCcEEEEEEEEEccCCCCCC-EEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEE
Confidence              788999999999999    45666 8999999988765 22322211       11 0123599999999999 9999


Q ss_pred             EEEECCCCceeeeeEEEEEeC
Q psy16863        625 CVATSSSGVKQFSAAYVHVLM  645 (1075)
Q Consensus       625 C~a~n~~g~~~~~~~~l~v~~  645 (1075)
                      |.|.|..|..... ..|.|..
T Consensus       314 C~a~N~~G~~~~~-~~l~v~~  333 (349)
T 4dep_C          314 CHARSAKGEVAKA-AKVKQKV  333 (349)
T ss_dssp             EEEECSSCEEEEE-CC-----
T ss_pred             EEEEcCCCcEEEE-EEEeeec
Confidence            9999999987643 4555554

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.95  E-value=1.5e-27  Score=264.10  Aligned_cols=262  Identities=19%  Similarity=0.310  Sum_probs=176.9

Q ss_pred             CeeeeeccceEeecCCeEEEEEEEecC-CCCceEEEEeCCeEE----ec-----CCcEEEEEcC----CceEEEEEeeee
Q psy16863        551 PIFIKEVENVKAKIGTSAILECQVLVP-PWPRSIYWYNKEGVV----EA-----SDKYHIMADG----LGGYSIEINYLE  616 (1075)
Q Consensus       551 ~~~~~~~~~~~v~~G~~~~L~C~~~~~-p~p~~v~W~~~~~~i----~~-----~~~~~~~~~~----~~~~~L~i~~~~  616 (1075)
                      ..+...+.++.+.+|+.++|.|.+.+. |.| .|.|++++...    ..     ..++....+.    .....|.|.+++
T Consensus         4 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~-~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~   82 (327)
T 2wng_A            4 LQVIQPDKSVSVAAGESAILHCTVTSLIPVG-PIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNIT   82 (327)
T ss_dssp             CCEECCCSEEEEETTSCEEECCEESCCCSCC-CEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCC
T ss_pred             eEEEcCCCceEEecCCcEEEEEEccCcCCCc-eEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCc
Confidence            345566778899999999999999987 666 89999987532    11     1133332221    234579999999


Q ss_pred             ecCCceEEEEEECCCCcee----eeeEEEEEeCCCCcCCCceeeccceeeecCCeEEEEEEEecCCCC--eEEEEECCEE
Q psy16863        617 AVDDGEWKCVATSSSGVKQ----FSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKVVGFPTP--TLQWFKDNEE  690 (1075)
Q Consensus       617 ~~d~G~Y~C~a~n~~g~~~----~~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~l~C~v~g~p~p--~v~W~k~g~~  690 (1075)
                      .+|+|.|+|.|.|..+...    .....|.|..++  ..|.+.. ....+.+|+.+.|.|.+.|.|.+  .++|+|+|..
T Consensus        83 ~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p--~~p~i~~-~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~  159 (327)
T 2wng_A           83 PADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKP--SAPVVSG-PAARATPQHTVSFTCESHGFSPRDITLKWFKNGNE  159 (327)
T ss_dssp             GGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCC--CCCEEEC-CSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             cccCeEEEEEeecCCCcceeEeecCcEEEEEEecC--CCceeec-cccccCCCCEEEEEEEEeCccCCCcEEEEEECCEE
Confidence            9999999999999876421    123466666553  2344432 23346788999999999998765  8999999998


Q ss_pred             cCCCC----------eEEEe--------ecCCCceEEEEEEecCceE---EEEEEEEEEeccccCchhhhhhhccCCCCC
Q psy16863        691 LKPGD----------VYQLT--------GTSSLGSYCCVAKNVMGKA---ESSTQLTIEDIRNHLSEEDKLLLLTNNKAP  749 (1075)
Q Consensus       691 l~~~~----------~~~~~--------~~~d~G~Y~C~a~N~~g~~---~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p  749 (1075)
                      +..+.          .|.+.        ..+|.|.|+|.|.|..|..   ..++.+.+.                ...+|
T Consensus       160 l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~----------------v~~~P  223 (327)
T 2wng_A          160 LSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSET----------------IRVPP  223 (327)
T ss_dssp             CCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGT----------------BCBCC
T ss_pred             ccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccc----------------cCCCC
Confidence            86432          23321        1235699999999988763   233333211                12577


Q ss_pred             eEEeccceeeeecCCeEEEEEEEecCC-CC-eEEEEECCEEeecCCcEEEEEeeCcE----EEEEEccccCCCCeEEEEE
Q psy16863        750 KFIEGLKSCQATVNEEFKFTVQVSISP-EP-KVSWFRDDQQVVESDNVKILKETLGV----CHLKIHALEVADQAEWKCI  823 (1075)
Q Consensus       750 ~~~~~~~~~~~~~g~~~~l~C~v~g~p-~p-~v~W~k~g~~i~~~~~~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~  823 (1075)
                      .+......  +.+|+.+.|.|.+.|.| ++ .|+|+|||+++..+....+....++.    ..|.|.++..+|+|.|+|.
T Consensus       224 ~i~~~~~~--~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~  301 (327)
T 2wng_A          224 TLEVTQQP--VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQ  301 (327)
T ss_dssp             EEEEEEEC--CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEE
T ss_pred             EEEEecCC--cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEE
Confidence            77655444  77999999999999954 44 89999999998754322233333332    4699999999999999999


Q ss_pred             EEeCCceEEEE
Q psy16863        824 ATNDFGQSITS  834 (1075)
Q Consensus       824 A~N~~G~~~~s  834 (1075)
                      |.|..|.+.+.
T Consensus       302 a~N~~~~~~s~  312 (327)
T 2wng_A          302 VEHDGQPAVSK  312 (327)
T ss_dssp             EEETTCCCEEE
T ss_pred             EEeCCCCCchh
Confidence            99999986543

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.95  E-value=9.5e-29  Score=275.37  Aligned_cols=269  Identities=17%  Similarity=0.256  Sum_probs=208.5

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEe-------cCCCcEEEEEECCEe--cCCCCcEEEEEcCCEEEEEEcccCCCCce
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIR-------SPTEIKIHWYRNDRK--LEENKIYRTQHDGNFYFIDLSSVSLFDSG  418 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~-------g~p~~~v~W~k~g~~--l~~~~~~~~~~~g~~~~L~I~~v~~~d~G  418 (1075)
                      ..|.|...+.+..+.+|+++.|.|.+.       +.|.+.|.|+|+|..  +......++...+.  .|.|.+++.+|+|
T Consensus        17 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G   94 (339)
T 3o4o_C           17 SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDG--ALWLLPALQEDSG   94 (339)
T ss_dssp             -CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETT--EEEESSBCTTCCE
T ss_pred             hhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCC--eEEECCCCcccCE
Confidence            467888888999999999999999997       888999999999987  43332222323333  4899999999999


Q ss_pred             eEEEEEEeCCCceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEE-----EECCCCCeEEEEeCCEeccCC-C-
Q psy16863        419 RWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECK-----VMGIPTPQLIWYKDNKKIKAG-D-  491 (1075)
Q Consensus       419 ~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~-----~~g~p~~~v~W~~~g~~l~~~-~-  491 (1075)
                      .|+|.|.|..|....++.|.|..++....+.+..  ...+.+|+.+.|.|.     +.|.|.+.+.|+|+|..+... . 
T Consensus        95 ~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~--~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~  172 (339)
T 3o4o_C           95 TYVCTTRNASYCDKMSIELRVFENTDAFLPFISY--PQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEK  172 (339)
T ss_dssp             EEECCEEETTEEEEEEEEEEEECSCGGGHHHHCE--EEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSS
T ss_pred             EEEEEEECCcceEEEEEEEEEEcCCCcccccccc--ceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCce
Confidence            9999999999988888888888765432222221  125789999999999     788999999999999998654 1 


Q ss_pred             ------EEEEEeCCCCCCCcEEEEEEEEecce----eeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceE
Q psy16863        492 ------IFALTANPKDPSSLGTYTCEAVNCMG----AAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVK  561 (1075)
Q Consensus       492 ------~~~l~i~~~~~~d~G~Y~C~a~n~~g----~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  561 (1075)
                            ...|.|..+...|+|.|+|.|.|..|    .....+.|.|....               ...+|.+...+....
T Consensus       173 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~---------------~~~~P~i~~~~~~~~  237 (339)
T 3o4o_C          173 FLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKK---------------EETIPVIISPLKTIS  237 (339)
T ss_dssp             EEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCC---------------CCCCCEECCCSCCCC
T ss_pred             eEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCC---------------CCCCCEEecCCceeE
Confidence                  13699999999999999999999887    45667777776321               123566666677778


Q ss_pred             eecCCeEEEEEEE---ecCCCCceEEEEeCCeEEe---------cCCcEEEEEcCCceE--EEEEeeeeecCC-ceEEEE
Q psy16863        562 AKIGTSAILECQV---LVPPWPRSIYWYNKEGVVE---------ASDKYHIMADGLGGY--SIEINYLEAVDD-GEWKCV  626 (1075)
Q Consensus       562 v~~G~~~~L~C~~---~~~p~p~~v~W~~~~~~i~---------~~~~~~~~~~~~~~~--~L~i~~~~~~d~-G~Y~C~  626 (1075)
                      +.+|+.++|.|.+   .+.|.+..+.|++++..+.         ...++.+..++....  .|.|.+++.+|+ |.|+|.
T Consensus       238 v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~  317 (339)
T 3o4o_C          238 ASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCV  317 (339)
T ss_dssp             CCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEE
T ss_pred             eccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEE
Confidence            9999999999999   8888444899999887643         333444433443222  699999999997 999999


Q ss_pred             EECCCCcee
Q psy16863        627 ATSSSGVKQ  635 (1075)
Q Consensus       627 a~n~~g~~~  635 (1075)
                      |.|..|...
T Consensus       318 a~N~~G~~~  326 (339)
T 3o4o_C          318 VHNTLSFQT  326 (339)
T ss_dssp             EEETTEEEC
T ss_pred             EEeccCceE
Confidence            999999865

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.95  E-value=5.3e-27  Score=250.67  Aligned_cols=245  Identities=15%  Similarity=0.230  Sum_probs=188.3

Q ss_pred             CeeeeeccceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECC
Q psy16863        551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSS  630 (1075)
Q Consensus       551 ~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  630 (1075)
                      |.+...+....+.+|+.++|.|.+.+.|.+..+.|++++..+...           ...|.|.+++.+|+|.|+|.+.|.
T Consensus         2 P~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~-----------~~~l~i~~~~~~d~G~Y~C~~~~~   70 (262)
T 3rjd_A            2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS-----------TPSYRITSASVNDSGEYRCQRGLS   70 (262)
T ss_dssp             CEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC-----------SSEEEESSCCGGGCEEEEEEESSS
T ss_pred             CeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc-----------CCeEEEecCCcccCeEEEEEEecC
Confidence            455666777889999999999999988876689999999887543           127999999999999999999987


Q ss_pred             CCceeeeeEEEEEeCCCCcCCCceeeccceeeecCCeEEEEEEE-ecCCCCeEEEEECCEEcCC---CCeEEEe--ecCC
Q psy16863        631 SGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKV-VGFPTPTLQWFKDNEELKP---GDVYQLT--GTSS  704 (1075)
Q Consensus       631 ~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~l~C~v-~g~p~p~v~W~k~g~~l~~---~~~~~~~--~~~d  704 (1075)
                      .+..   ...+.|..+     +.........+.+|+.+.|.|.+ .+.|.+.+.|+++|..+..   +..+.+.  ..+|
T Consensus        71 ~~s~---~~~l~v~~~-----~~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~~~~~l~i~~~~~~d  142 (262)
T 3rjd_A           71 GRSD---PIQLEIHRG-----WLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISH  142 (262)
T ss_dssp             CCCC---CEEEEEECS-----SEEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEEECCCEEESSCCGGG
T ss_pred             Cccc---cEEEEEecc-----ceEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccccCCCCeEEEEECChhh
Confidence            7653   345666543     23333334457789999999999 6788889999999998754   3345554  3478


Q ss_pred             CceEEEEEEecCceEEEEEEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecCCC-Ce----
Q psy16863        705 LGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPE-PK----  779 (1075)
Q Consensus       705 ~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~-p~----  779 (1075)
                      .|.|+|.|.|..+.....+.|.|.+..               .+|.+.... ...+..|+.+.|.|.+.+.|. |.    
T Consensus       143 ~G~Y~C~~~n~~~~~~~~~~l~V~~~~---------------~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~  206 (262)
T 3rjd_A          143 NGTYHCSGMGKHRYTSAGISVTVKELF---------------PAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLY  206 (262)
T ss_dssp             CEEEEEEEESSSEEEEECEEEEEECSS---------------CCCEEEESS-CSSEETTCCEEEEEECCCCCC-----EE
T ss_pred             CEEEEEEEeCCCCccccceEEEeccCC---------------CCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCccEE
Confidence            999999999999888888888887531               255555444 566889999999999999886 53    


Q ss_pred             EEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceE-EEEEEEEE
Q psy16863        780 VSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQS-ITSCFLKL  839 (1075)
Q Consensus       780 v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~s~~l~V  839 (1075)
                      +.|+|+|..+...         .....|.|.+++.+|+|.|+|.|.|..|.. ..+..+.|
T Consensus       207 ~~w~~~~~~~~~~---------~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~~~s~~~~l  258 (262)
T 3rjd_A          207 FSFYMGSKTLRGR---------NTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELEL  258 (262)
T ss_dssp             EEEEETTEEEEEE---------ESCCEEEESSCCGGGCEEEEEEEEETTSSCEEECCCEEE
T ss_pred             EEEEeCCcEeccc---------CCCceEEEEEechhhCeEEEEEEEcccCceEEecCCeEE
Confidence            7899999987532         123479999999999999999999999975 33444444

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.95  E-value=1.4e-28  Score=269.95  Aligned_cols=253  Identities=18%  Similarity=0.210  Sum_probs=176.7

Q ss_pred             eeecCCeEEEEEEEecC-CCCeEEEEECCEEcC---------------C--------------CCeEEEe--ecCCCceE
Q psy16863        661 VMTDDGLVSFECKVVGF-PTPTLQWFKDNEELK---------------P--------------GDVYQLT--GTSSLGSY  708 (1075)
Q Consensus       661 ~~~~g~~~~l~C~v~g~-p~p~v~W~k~g~~l~---------------~--------------~~~~~~~--~~~d~G~Y  708 (1075)
                      .+..|+.++|.|.+.+. |.+.|+|+|++....               .              +..+.+.  ..+|+|.|
T Consensus        10 tv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y   89 (308)
T 4fom_A           10 TAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSGKY   89 (308)
T ss_dssp             EEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCEEE
T ss_pred             EEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCEEE
Confidence            45679999999998754 445799998543210               0              0123333  34799999


Q ss_pred             EEEEEec-CceEEEEEEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEE-ecCCCCeEEEEECC
Q psy16863        709 CCVAKNV-MGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQV-SISPEPKVSWFRDD  786 (1075)
Q Consensus       709 ~C~a~N~-~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v-~g~p~p~v~W~k~g  786 (1075)
                      +|.|.|. .|.....+.+.+...                .++.+...+.......|+.+.|.|.+ .|.|.|.|+|+|++
T Consensus        90 ~C~a~n~~~~~~~~~~~~~v~~~----------------~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~  153 (308)
T 4fom_A           90 ICKAVTFPLGNAQSSTTVTVLVE----------------PTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDL  153 (308)
T ss_dssp             EEEEEETTTEEEEEEEEEEEEBC----------------CEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCS
T ss_pred             EEEEeeCCCcceeeeeEEEeeec----------------cccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECC
Confidence            9999996 566666777777642                11223334445556678999999985 68999999999999


Q ss_pred             EEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEE--EEEEEEEecCCCCCCeeeeecceeecCCCeE
Q psy16863        787 QQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT--SCFLKLNVPKHYKKPKFLEELKAVLSEGGAV  864 (1075)
Q Consensus       787 ~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~--s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~  864 (1075)
                      .++.................|.|..+..+|+|.|+|.|.|..|....  ++.|.|..+|.+..   .......+..|+.+
T Consensus       154 ~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~---~~~~~~~~~~g~~v  230 (308)
T 4fom_A          154 GEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSV---TGYDGNWFVGRKGV  230 (308)
T ss_dssp             SBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECC---BCCCSCEETTCCSC
T ss_pred             cccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEE---cccceeeeeccccE
Confidence            88754321110000111347999999999999999999999876544  44455554432211   01112235678899


Q ss_pred             EEEEEEEccCCC-eeEEEECCEEcCCC----CeeEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEecCCh
Q psy16863        865 NLECKVIGVPQP-TLKWFKDGRELKAG----DIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKS  932 (1075)
Q Consensus       865 ~L~C~v~g~p~p-~v~W~k~g~~l~~~----~~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~~  932 (1075)
                      +|.|.+.|.|.| .|+|+|+|.++..+    +...+++......|+|.|+|.|+|.+|++++++.|.|.++|-
T Consensus       231 ~l~C~~~g~P~p~~v~W~k~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P~  303 (308)
T 4fom_A          231 NLKCNADANPPPFKSVWSRLDGQWPDGLLASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPPH  303 (308)
T ss_dssp             EEECCEEEESCEEEEECCBSSSCCCSSCBCSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC-
T ss_pred             EEEEEEecCCCCcEEEEEECCeECCCcEEEcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCCC
Confidence            999999999998 69999999887643    233445566677899999999999999999999999987763

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.95  E-value=3.8e-27  Score=258.95  Aligned_cols=265  Identities=18%  Similarity=0.179  Sum_probs=189.3

Q ss_pred             eeeecCceeeccCCeEEEEEEEecCCCc-----EEEEEECCEec-------------CCCCcEEEEEc-----CCEEEEE
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIRSPTEI-----KIHWYRNDRKL-------------EENKIYRTQHD-----GNFYFID  408 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~-----~v~W~k~g~~l-------------~~~~~~~~~~~-----g~~~~L~  408 (1075)
                      ++..|..+.+..|++++|.|.+.+.+.+     .|+|+|+|...             ....++.+...     .....|.
T Consensus         3 vv~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~   82 (313)
T 4fqp_A            3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR   82 (313)
T ss_dssp             EEECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEE
T ss_pred             EEcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEE
Confidence            3455667788999999999999886654     59999998532             22233333211     1123599


Q ss_pred             EcccCCCCceeEEEEEEe-CCCceeeEEEEEeecCCCCCCCeeeeecc-eEEecCCeEEEEEEEE-CCCCCeEEEEeCCE
Q psy16863        409 LSSVSLFDSGRWTCLAEN-AVGRSHCSCELSVLVPKAYKAPFFTKELE-AILTEQGTVSLECKVM-GIPTPQLIWYKDNK  485 (1075)
Q Consensus       409 I~~v~~~d~G~Y~C~a~n-~~g~~~~s~~l~V~~~~~~~~p~~~~~~~-~~~~~g~~v~l~C~~~-g~p~~~v~W~~~g~  485 (1075)
                      |.+++.+|+|.|+|.|.+ ..|.....+.|.|..+|     .+..... ..+..++.+.|.|.+. +.|.+.++|++++.
T Consensus        83 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P-----~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~  157 (313)
T 4fqp_A           83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP-----QNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLG  157 (313)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCC-----EEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTC
T ss_pred             ECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCC-----cceecccceEeecCceEEEEEEccCccCCcEEEeecCCc
Confidence            999999999999999864 44555556666665543     3333332 3356778899999865 78999999999998


Q ss_pred             eccCCC--------E----EEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCee
Q psy16863        486 KIKAGD--------I----FALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIF  553 (1075)
Q Consensus       486 ~l~~~~--------~----~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (1075)
                      .+....        .    ..|.+......|+|.|+|.|.|..+.......+.+..                 . .+|.+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V-----------------~-~~P~v  219 (313)
T 4fqp_A          158 GMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTV-----------------Y-YPPEV  219 (313)
T ss_dssp             CEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCB-----------------C-EEEEE
T ss_pred             cccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeeccc-----------------c-cCCcc
Confidence            764321        1    2478888888999999999999887665554443321                 0 13333


Q ss_pred             -eeeccceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCC
Q psy16863        554 -IKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSG  632 (1075)
Q Consensus       554 -~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  632 (1075)
                       ........+..|+.++|.|.+.|.|.|..|+|+++++.+....   ....+    +|.|.+++.+|+|.|+|.|.|..|
T Consensus       220 ~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~---~~~~~----~L~i~~v~~~d~G~Y~C~a~N~~G  292 (313)
T 4fqp_A          220 SISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFA---VAQGA----QLLIRPVDKPINTTLICNVTNALG  292 (313)
T ss_dssp             EEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE---EEETT----EEEECCCSSCCEEEEEEEEECSSC
T ss_pred             ccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCce---EEeCC----EEEECcCChhhCEEEEEEEEeCCC
Confidence             3444555677889999999999999886799999999875432   22222    799999999999999999999999


Q ss_pred             ceeeeeEEEEEeCCC
Q psy16863        633 VKQFSAAYVHVLMPK  647 (1075)
Q Consensus       633 ~~~~~~~~l~v~~p~  647 (1075)
                      .... ...|.|..+|
T Consensus       293 ~~~~-~~~l~V~~~P  306 (313)
T 4fqp_A          293 ARQA-ELTVQVKEGP  306 (313)
T ss_dssp             EEEE-EEEEEEECCC
T ss_pred             cEEE-EEEEEEEeCC
Confidence            8763 4567776543

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.95  E-value=2.1e-25  Score=261.60  Aligned_cols=366  Identities=12%  Similarity=0.056  Sum_probs=222.7

Q ss_pred             cccceeeccceeEEEEEecCCC------ceEEEEec-CCCeee-EEecCCCc--cc--cCCCeEEEee--CCeEEEEEcc
Q psy16863        249 LHDIAVKVGTRARLLVEIRSPT------EIKCQFDL-NNTIPF-SFRAQGDH--PI--FGNRFRAINR--DGRTELNIRR  314 (1075)
Q Consensus       249 ~~~~~v~~g~~~~l~c~~~~~~------~~~c~~~~-~~~~~~-~w~~~~~~--~~--~~~~~~~~~~--~~~~~L~I~~  314 (1075)
                      +..+.+.+|+.++|.|.+.+..      .+.|.... +....+ .+...++.  ..  ...|+.+..+  .+..+|+|.+
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   86 (512)
T 1zvo_C            7 SGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLRS   86 (512)
T ss_pred             CCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEECc
Confidence            4566788999999999987421      22221111 111111 11111111  00  1356666543  3457999999


Q ss_pred             cCCCCCEEEEEEEEeCCe-----------e--EEEEEEEEEecCCCCCCeeee-ecCceeeccCCeEEEEEEEecC-CCc
Q psy16863        315 VRRDDGGRYSVTASNESG-----------Y--STAKFELSVESQVPDAPAFIR-RLHDIAVKVGTRARLLVEIRSP-TEI  379 (1075)
Q Consensus       315 ~~~~d~G~Y~C~a~n~~g-----------~--~~~~~~l~V~~~~~~~p~~~~-~~~~~~v~~G~~v~l~C~~~g~-p~~  379 (1075)
                      ++.+|+|.|.|.+.+..+           .  ....+.|.|....+.+|.+.. .+.......|+.++|.|.+.|. |.+
T Consensus        87 v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P~p  166 (512)
T 1zvo_C           87 MSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPTS  166 (512)
T ss_pred             CCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeeecCc
Confidence            999999999999998642           0  123457777643334565542 2211102357899999999886 654


Q ss_pred             -EEEEEECCEecC-CCCcEEEEEcCCE---EEEEEcccCCCCceeEEEEEEeCCCceeeEE-----------EEEeecCC
Q psy16863        380 -KIHWYRNDRKLE-ENKIYRTQHDGNF---YFIDLSSVSLFDSGRWTCLAENAVGRSHCSC-----------ELSVLVPK  443 (1075)
Q Consensus       380 -~v~W~k~g~~l~-~~~~~~~~~~g~~---~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~-----------~l~V~~~~  443 (1075)
                       .|+|++++.... .........+|..   ..|.|.....+ .|.|+|.|.|..|......           .+.|.++|
T Consensus       167 ~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~~pp  245 (512)
T 1zvo_C          167 VTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQP  245 (512)
T ss_pred             eEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEeCCC
Confidence             999999764321 0111111223332   35888887777 8999999999988765544           34454443


Q ss_pred             C-----------------------------------------------CCCCee-eeecc-eEEecCCeEEEEEEEECCC
Q psy16863        444 A-----------------------------------------------YKAPFF-TKELE-AILTEQGTVSLECKVMGIP  474 (1075)
Q Consensus       444 ~-----------------------------------------------~~~p~~-~~~~~-~~~~~g~~v~l~C~~~g~p  474 (1075)
                      .                                               ..+|.+ ...+. ..+.+|+.+.|.|.+.|.+
T Consensus       246 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~v~g~~  325 (512)
T 1zvo_C          246 QAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGSD  325 (512)
T ss_pred             chhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEEEeceE
Confidence            2                                               112332 22222 1256799999999999864


Q ss_pred             C--CeEEEEeCCEeccCC-----------CE----EEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEeccccccCCC
Q psy16863        475 T--PQLIWYKDNKKIKAG-----------DI----FALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDND  537 (1075)
Q Consensus       475 ~--~~v~W~~~g~~l~~~-----------~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~  537 (1075)
                      +  ..|+|+|+|+.+..+           ..    ..|.|.....+|.|.|+|.|.|..+... ...+.....       
T Consensus       326 P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~~~~~~~~-------  397 (512)
T 1zvo_C          326 LKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RLMALREPA-------  397 (512)
T ss_pred             CCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC-ceeEEeecC-------
Confidence            4  399999999886521           11    2478888888899999999999887653 332322100       


Q ss_pred             CCCcCCCCCCCCCCeeeeeccceEeecCCeEE-EEEEEecCC-CCceEEEEeCCeEEecCCcE--EEEEcCCce-----E
Q psy16863        538 DVPFNSLMPPGPAPIFIKEVENVKAKIGTSAI-LECQVLVPP-WPRSIYWYNKEGVVEASDKY--HIMADGLGG-----Y  608 (1075)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~-L~C~~~~~p-~p~~v~W~~~~~~i~~~~~~--~~~~~~~~~-----~  608 (1075)
                            .....+|......+..    .|+.+. |.|.+.|.+ .+..+.|+++|..+......  ....++.+.     .
T Consensus       398 ------~~~~~~p~v~~~~~~~----~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s  467 (512)
T 1zvo_C          398 ------AQAPVKLSLNLLASSD----PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWS  467 (512)
T ss_pred             ------CCCCCCCEEEEEccCc----CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCCCEEEEEE
Confidence                  0000122222222222    799999 999999854 34478999999988654211  122232222     2


Q ss_pred             EEEEeeeeecCCceEEEEEECCCCc
Q psy16863        609 SIEINYLEAVDDGEWKCVATSSSGV  633 (1075)
Q Consensus       609 ~L~i~~~~~~d~G~Y~C~a~n~~g~  633 (1075)
                      .|.|.....+|.|.|+|.|.|....
T Consensus       468 ~L~v~~~~~~~~g~YtC~v~h~~l~  492 (512)
T 1zvo_C          468 VLRVPAPPSPQPATYTCVVSHEDSR  492 (512)
T ss_pred             EEEECchhcCCCCeEEEEEEecCCC
Confidence            4667777777799999999998755

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.95  E-value=7.2e-27  Score=253.70  Aligned_cols=261  Identities=16%  Similarity=0.186  Sum_probs=198.3

Q ss_pred             CCccccccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCccccCCCeEEEeeCCeEEEEEcccCCCCCE
Q psy16863        242 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGG  321 (1075)
Q Consensus       242 ~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G  321 (1075)
                      +|.+...+.+..+.+|+.++|.|.+.+              .+.|++++...     ...........|.|.+++.+|+|
T Consensus         4 ~p~i~~~~~~~~v~~G~~v~L~C~~~~--------------~v~W~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G   64 (289)
T 3ejj_X            4 APVIEPSGPELVVEPGETVTLRCVSNG--------------SVEWDGPISPY-----WTLDPESPGSTLTTRNATFKNTG   64 (289)
T ss_dssp             CCEEESCSSEEEECTTCCEEEEEECSS--------------CCEEECSCSSS-----SEECCCSSCCEEEESSCCGGGCE
T ss_pred             CcEecCCCceEEECCCCCEEEEEEeCC--------------cEEEccCCCce-----EEEeccCCccEEEEeeeccccCE
Confidence            455556667788999999999998754              36677544321     12223344568999999999999


Q ss_pred             EEEEEEEeCCeeEEEEEEEEEecCCCCCCe-eeeecCceeeccCCeEEEEEEEecCCCcE-EEEEE-CCEecCCCCcEEE
Q psy16863        322 RYSVTASNESGYSTAKFELSVESQVPDAPA-FIRRLHDIAVKVGTRARLLVEIRSPTEIK-IHWYR-NDRKLEENKIYRT  398 (1075)
Q Consensus       322 ~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~-~~~~~~~~~v~~G~~v~l~C~~~g~p~~~-v~W~k-~g~~l~~~~~~~~  398 (1075)
                      .|+|.|.|..|..+..+.|.|..    +|. +...+....+.+|+++.|.|.+.+.+.+. +.|++ ++..+..+.++.+
T Consensus        65 ~Y~C~~~~~~~~~~~~~~l~V~~----~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~  140 (289)
T 3ejj_X           65 TYRCTELEDPMAGSTTIHLYVKD----PAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFF  140 (289)
T ss_dssp             EEEEECCC-----CEEEEEEECC----SSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEE
T ss_pred             EEEEEEeccCCcceeEEEEEEeC----CCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEE
Confidence            99999999888888888888875    222 55666788999999999999998876554 99986 7777777777766


Q ss_pred             EEcCCEEEEEEcccCCCCceeEEEEEE-eCCCceeeEEEEEeecCCCCCCCeeeeecceE-EecCCeEEEEEEEEC-CCC
Q psy16863        399 QHDGNFYFIDLSSVSLFDSGRWTCLAE-NAVGRSHCSCELSVLVPKAYKAPFFTKELEAI-LTEQGTVSLECKVMG-IPT  475 (1075)
Q Consensus       399 ~~~g~~~~L~I~~v~~~d~G~Y~C~a~-n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~-~~~g~~v~l~C~~~g-~p~  475 (1075)
                      ..++   .|.|.+++.+|+|.|+|.|. |..+.....+.|.|...+. .+|.+...+... +.+|+.+.|.|.+.+ .|.
T Consensus       141 ~~~~---~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~-~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~  216 (289)
T 3ejj_X          141 SPWR---GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHP-EPPQIKLEPSKLVRIRGEAAQIVCSATNAEVG  216 (289)
T ss_dssp             ETTT---EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCC-CCCEEEEESSSEECCSSSCEEEEEEEEESSSC
T ss_pred             CCCC---CEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCC-CCCeEEecCCceEEEeCCcEEEEEEeCCCCCc
Confidence            5554   38899999999999999999 4445556667777764321 345555554443 578999999999998 789


Q ss_pred             CeEEEEeCCEeccCCC-----------EEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEec
Q psy16863        476 PQLIWYKDNKKIKAGD-----------IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARG  529 (1075)
Q Consensus       476 ~~v~W~~~g~~l~~~~-----------~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~  529 (1075)
                      +.+.|++++..+....           ...|.|..+..+|+|.|+|.|.|..|...+++.|.+..
T Consensus       217 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~  281 (289)
T 3ejj_X          217 FNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVE  281 (289)
T ss_dssp             CEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC-
T ss_pred             eEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEe
Confidence            9999999999886532           34799999999999999999999999999999888763

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.95  E-value=1.3e-26  Score=254.65  Aligned_cols=270  Identities=15%  Similarity=0.184  Sum_probs=195.8

Q ss_pred             ccccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCcc------------c-cCCCeEEEee-----CCe
Q psy16863        246 IRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHP------------I-FGNRFRAINR-----DGR  307 (1075)
Q Consensus       246 ~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~------------~-~~~~~~~~~~-----~~~  307 (1075)
                      +..+.++.+..|+.++|.|.+..+....     .....+.|++++...            . ...+++....     .+.
T Consensus         4 v~~P~~v~~~~G~~v~L~C~v~~~~~~~-----~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~   78 (313)
T 4fqp_A            4 VQAPTQVPGFLGDSVTLPCYLQVPNMEV-----THVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRN   78 (313)
T ss_dssp             EECCSEECCBTTSCEEECCEEECCTTSC-----CCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCB
T ss_pred             EcCCCEEEEecCCCEEEEEEEECCCCCc-----cceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccc
Confidence            3445667788999999999887543100     001124566554321            1 1223333211     123


Q ss_pred             EEEEEcccCCCCCEEEEEEEEe-CCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEE-ecCCCcEEEEEE
Q psy16863        308 TELNIRRVRRDDGGRYSVTASN-ESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEI-RSPTEIKIHWYR  385 (1075)
Q Consensus       308 ~~L~I~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~-~g~p~~~v~W~k  385 (1075)
                      .+|.|.+++.+|+|.|+|.|.+ ..|..+..+.|.|..    +|.+...+....+..|+.+.|.|.+ .+.|.+.+.|++
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~----~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~  154 (313)
T 4fqp_A           79 ASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLA----KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHS  154 (313)
T ss_dssp             CCEEECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBB----CCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEE
T ss_pred             eEEEECcCChhhCEEEEEEEeeccCcceeeeeeeeecc----CCcceecccceEeecCceEEEEEEccCccCCcEEEeec
Confidence            4799999999999999999865 566677777777764    6777777777788899999999987 478899999999


Q ss_pred             CCEecCCCCcEEEEEcCCE---EEEEEcccCCCCceeEEEEEEeCCCceeeEE--EEEeecCCCCCCCeee-ee-cceEE
Q psy16863        386 NDRKLEENKIYRTQHDGNF---YFIDLSSVSLFDSGRWTCLAENAVGRSHCSC--ELSVLVPKAYKAPFFT-KE-LEAIL  458 (1075)
Q Consensus       386 ~g~~l~~~~~~~~~~~g~~---~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~--~l~V~~~~~~~~p~~~-~~-~~~~~  458 (1075)
                      ++..+..........++..   ..|.|..+..+|+|.|+|.|.|..+....+.  .|.|..+|     .+. .. ....+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P-----~v~~~~~~~~~~  229 (313)
T 4fqp_A          155 DLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPP-----EVSISGYDNNWY  229 (313)
T ss_dssp             TTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEE-----EEEEECCCSCEE
T ss_pred             CCccccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCC-----ccccccccceee
Confidence            9988765444333334433   3588999999999999999999887765444  44444433     332 22 22346


Q ss_pred             ecCCeEEEEEEEECCCCC-eEEEEeCCEeccCCCEE---EEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEec
Q psy16863        459 TEQGTVSLECKVMGIPTP-QLIWYKDNKKIKAGDIF---ALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARG  529 (1075)
Q Consensus       459 ~~g~~v~l~C~~~g~p~~-~v~W~~~g~~l~~~~~~---~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~  529 (1075)
                      .+|+.++|.|.+.|+|.| .|+|+|+|+++......   .|.|..+..+|+|.|+|.|.|..|....++.|.|..
T Consensus       230 ~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  304 (313)
T 4fqp_A          230 LGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKE  304 (313)
T ss_dssp             TTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEEEETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             cCCCeEEEEEEecCCCCCcEEEEEECCEECCCceEEeCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            678899999999999999 79999999998654332   699999999999999999999999999999999873

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.95  E-value=2.4e-25  Score=253.19  Aligned_cols=353  Identities=20%  Similarity=0.240  Sum_probs=245.3

Q ss_pred             CccccccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCC-Ccccc------CCCeEEEeeCCeEEEEEccc
Q psy16863        243 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG-DHPIF------GNRFRAINRDGRTELNIRRV  315 (1075)
Q Consensus       243 p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~-~~~~~------~~~~~~~~~~~~~~L~I~~~  315 (1075)
                      |.+.. +.+..+.+|+.++|.|.+.+          .+.+.+.|++++ +..+.      ..++.+........|.|.++
T Consensus         2 P~i~~-~~~~~~~~G~~v~l~C~~~g----------~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v   70 (389)
T 2jll_A            2 PHIIQ-LKNETTYENGQVTLVCDAEG----------EPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDV   70 (389)
T ss_dssp             CEEEE-CCCEEEETTSEEEEEEEEEC----------SSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESC
T ss_pred             CeEEe-cCceEEeCCCeEEEEEEeec----------ccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEccc
Confidence            44443 66778899999999887754          455678888872 33332      35677766667789999999


Q ss_pred             CCCCCEEEEEEEEeCCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCC-
Q psy16863        316 RRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENK-  394 (1075)
Q Consensus       316 ~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~-  394 (1075)
                      +.+|+|.|+|.|.|..|..+..+.|.|..    +|.+...+....+.+|+.+.|.|.+.|.|.+.|+|+|+|..+.... 
T Consensus        71 ~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~----~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~  146 (389)
T 2jll_A           71 KLSDSGRYDCEAASRIGGHQKSMYLDIEY----APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNT  146 (389)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEEEEEE----EEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTC
T ss_pred             ChhhCEEEEEEEEeCCCCcceEEEEEEEe----CCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccC
Confidence            99999999999999999999999999985    7777766666678999999999999999999999999999997654 


Q ss_pred             -cEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEE--
Q psy16863        395 -IYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVM--  471 (1075)
Q Consensus       395 -~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~--  471 (1075)
                       ++.+..++....|.|.++..+|+|.|+|.|.|..|....++.+.+...|.  +|...   ......+..+.|.|...  
T Consensus       147 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~--~P~~~---~~~~~~~~~~~l~w~~p~~  221 (389)
T 2jll_A          147 TNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPS--SPYGV---KIIELSQTTAKVSFNKPDS  221 (389)
T ss_dssp             TTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCC--CCEEE---EEEEECSSCEEEEEECCSC
T ss_pred             ceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCC--CCcce---EEeeccCCEEEEEEeCCCC
Confidence             67777777778899999999999999999999999988777777755442  23211   11223456788999743  


Q ss_pred             --CCCCC--eEEEEeCCEec-----cCCCEEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCcC
Q psy16863        472 --GIPTP--QLIWYKDNKKI-----KAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFN  542 (1075)
Q Consensus       472 --g~p~~--~v~W~~~g~~l-----~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~  542 (1075)
                        |.|..  .+.|.+++...     .......+.|..+...+.|.|+|.|.|..|....+..+.+...+           
T Consensus       222 ~~g~pi~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~-----------  290 (389)
T 2jll_A          222 HGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLP-----------  290 (389)
T ss_dssp             CTTSCEEEEEEEEEETTCSCCEEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC-----------
T ss_pred             CCCcceEEEEEEEEECCCcccEEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecC-----------
Confidence              22332  57788877532     12334578899999999999999999999977655544443110           


Q ss_pred             CCCCCCCCCeeeeeccceEeecCCeEEEEEEEecCCC-C---ceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeec
Q psy16863        543 SLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPW-P---RSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAV  618 (1075)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~-p---~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~  618 (1075)
                       ..++.+ |.+.     .....+..+.|.|....... +   +.+.|...+..-   ........+ ....+.|.++...
T Consensus       291 -~~~p~~-p~~~-----~~~~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~~---~~~~~~~~~-~~~~~~i~~L~~~  359 (389)
T 2jll_A          291 -VREPSP-PSIH-----GQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKED---QWLEKKVQG-NKDHIILEHLQWT  359 (389)
T ss_dssp             -CCCCCC-CCEE-----EEEETTTEEEEEECCCCCCSSCCCEEEEEEEC--------CCBCCEECT-TCCEEEECSCCTT
T ss_pred             -CCCCCC-Cccc-----cccCcCCEEEEEEECCCCCCCcccEEEEEEEeCCCCc---ceeEeeccC-CcceEEeCCcCCC
Confidence             111222 2221     11235678899887532111 1   123332211100   000111122 2336788999999


Q ss_pred             CCceEEEEEECCCCceeee
Q psy16863        619 DDGEWKCVATSSSGVKQFS  637 (1075)
Q Consensus       619 d~G~Y~C~a~n~~g~~~~~  637 (1075)
                      ..+.|++.|.|..|....+
T Consensus       360 t~Y~~~V~A~n~~G~s~~s  378 (389)
T 2jll_A          360 MGYEVQITAANRLGYSEPT  378 (389)
T ss_dssp             CEEEEEEEEEC-CCBCCCE
T ss_pred             CEEEEEEEEEcCCcCCCce
Confidence            9999999999999987654

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.95  E-value=8.3e-28  Score=264.72  Aligned_cols=261  Identities=15%  Similarity=0.197  Sum_probs=196.2

Q ss_pred             cccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCccc-c---CCCeEEEeeCCeEEEEEcccCCCCCEEEE
Q psy16863        249 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPI-F---GNRFRAINRDGRTELNIRRVRRDDGGRYS  324 (1075)
Q Consensus       249 ~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~~-~---~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~  324 (1075)
                      ...+.+.+|+.+.|.|.+.+.+         +...+.|++++.... .   ..++..  .++  .|.|.+++.+|+|.|+
T Consensus        12 ~~~~~v~~G~~v~L~C~~~~~~---------~~~~v~W~k~~~~~~~~~~~~~~~~~--~~~--~L~i~~v~~~D~G~Y~   78 (315)
T 1itb_B           12 KIILVSSANEIDVRPCPLNPNE---------HKGTITWYKDDSKTPVSTEQASRIHQ--HKE--KLWFVPAKVEDSGHYY   78 (315)
T ss_dssp             CCCCEEETTSCCCCBCCCCSCC---------CSSCCCEECTTSCSCSCCCTTSSSEE--CSS--BEECTTCCGGGCSCCE
T ss_pred             ceEEEEcCCCcEEEEeeccCcC---------CCceEEEEeCCCcCccccccCCcEec--cCC--eEEECCCChhhCEEEE
Confidence            3456788999999988776432         245788988775421 1   233332  232  7999999999999999


Q ss_pred             EEEEeCCeeEEEEEEEEEecCCCCCCeeeee---cCceeeccCCeEEEEEEE------ecCCCcEEEEEECCEecCCCCc
Q psy16863        325 VTASNESGYSTAKFELSVESQVPDAPAFIRR---LHDIAVKVGTRARLLVEI------RSPTEIKIHWYRNDRKLEENKI  395 (1075)
Q Consensus       325 C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~---~~~~~v~~G~~v~l~C~~------~g~p~~~v~W~k~g~~l~~~~~  395 (1075)
                      |.|.|..|.....+.+.+..   .+|.+...   .....+.+|+++.|.|.+      .|.|.+.++|+|+|..+..+..
T Consensus        79 C~a~n~~g~~~~~~~v~v~~---~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~  155 (315)
T 1itb_B           79 CVVRNSSYCLRIKISAKFVE---NEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNI  155 (315)
T ss_dssp             ECCCSSSCCCCEECCCEEEC---CCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSS
T ss_pred             EEEeCCceEEEEEEEEEEeC---CCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccc
Confidence            99999988766666666543   23433222   234578899999999998      7889999999999999865433


Q ss_pred             EEEEEcCCEEEEEEcccCCCCceeEEEEEE-eCCCce---eeEEEEEeecCCCCCCCeeeeecce--EEecCCeEEEEEE
Q psy16863        396 YRTQHDGNFYFIDLSSVSLFDSGRWTCLAE-NAVGRS---HCSCELSVLVPKAYKAPFFTKELEA--ILTEQGTVSLECK  469 (1075)
Q Consensus       396 ~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~-n~~g~~---~~s~~l~V~~~~~~~~p~~~~~~~~--~~~~g~~v~l~C~  469 (1075)
                      ..... +.  .|.|.+++.+|+|.|+|.|. |..|..   .....+.+..+....+|.+...+..  .+.+|+.+.|.|.
T Consensus       156 ~~~~~-~~--~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~  232 (315)
T 1itb_B          156 HFSGV-KD--RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICN  232 (315)
T ss_dssp             SEEEE-TT--EEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEE
T ss_pred             eEeec-Cc--eEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEE
Confidence            22222 33  58999999999999999999 788876   3334444444443456666655542  4789999999999


Q ss_pred             EECCCCCeEEEEeCCEeccCCC---------------------EEEEEeCCCCCCC-cEEEEEEEEecceeeEEEEEEEE
Q psy16863        470 VMGIPTPQLIWYKDNKKIKAGD---------------------IFALTANPKDPSS-LGTYTCEAVNCMGAAFSTSRVIA  527 (1075)
Q Consensus       470 ~~g~p~~~v~W~~~g~~l~~~~---------------------~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~~~~~v~v  527 (1075)
                      +.|.|.|.+.|+++|..+..+.                     ...|.|..+..+| +|.|+|.|.|..|....++.|.|
T Consensus       233 ~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v  312 (315)
T 1itb_B          233 VTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY  312 (315)
T ss_dssp             EEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEEC
T ss_pred             EecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEe
Confidence            9999999999999999987643                     2379999999999 99999999999999998888876


Q ss_pred             e
Q psy16863        528 R  528 (1075)
Q Consensus       528 ~  528 (1075)
                      .
T Consensus       313 ~  313 (315)
T 1itb_B          313 P  313 (315)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.95  E-value=3.2e-25  Score=252.17  Aligned_cols=338  Identities=17%  Similarity=0.214  Sum_probs=230.1

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEEC--CEecCC-----CCcEEEEEcCCEEEEEEcccCCCCceeEE
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DRKLEE-----NKIYRTQHDGNFYFIDLSSVSLFDSGRWT  421 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~l~~-----~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~  421 (1075)
                      +|.|.. +.+..+.+|+++.|.|.+.|.|.+.|+|+|+  |..+..     ..++.+..++....|.|.+++.+|+|.|+
T Consensus         1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~   79 (389)
T 2jll_A            1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD   79 (389)
T ss_dssp             CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEE
T ss_pred             CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEE
Confidence            466665 6677888999999999999999999999999  888865     46777776667788999999999999999


Q ss_pred             EEEEeCCCceeeEEEEEeecCCCCCCCeeeeecce-EEecCCeEEEEEEEECCCCCeEEEEeCCEeccCCC---------
Q psy16863        422 CLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEA-ILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD---------  491 (1075)
Q Consensus       422 C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~-~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~---------  491 (1075)
                      |.|.|..|....++.|.|..+|.     +...... .+.+|+.+.|.|.+.|.|.+.++|+|+|..+....         
T Consensus        80 C~a~n~~g~~~~~~~l~V~~~P~-----~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~  154 (389)
T 2jll_A           80 CEAASRIGGHQKSMYLDIEYAPK-----FISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYST  154 (389)
T ss_dssp             EEEECSSCEEEEEEEEEEEEEEE-----ECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEEC
T ss_pred             EEEEeCCCCcceEEEEEEEeCCE-----EecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEecc
Confidence            99999999998899999987654     3333333 36789999999999999999999999999986543         


Q ss_pred             --EEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEE
Q psy16863        492 --IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAI  569 (1075)
Q Consensus       492 --~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~  569 (1075)
                        ...|.|..+...|+|.|+|.|.|..|.....+.+.+...                +.+|..+.     .....+..+.
T Consensus       155 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~----------------P~~P~~~~-----~~~~~~~~~~  213 (389)
T 2jll_A          155 GRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADV----------------PSSPYGVK-----IIELSQTTAK  213 (389)
T ss_dssp             SSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCC----------------CCCCEEEE-----EEEECSSCEE
T ss_pred             CCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCC----------------CCCCcceE-----EeeccCCEEE
Confidence              346899999999999999999999999888877776421                11111111     1123367899


Q ss_pred             EEEEEecCC--CC---ceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEEe
Q psy16863        570 LECQVLVPP--WP---RSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL  644 (1075)
Q Consensus       570 L~C~~~~~p--~p---~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~  644 (1075)
                      |.|......  .|   ..+.|.+++..     .+...........|.|.++...+.|.|+|.|.|..|....+.......
T Consensus       214 l~w~~p~~~~g~pi~~y~v~~~~~~~~-----~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t  288 (389)
T 2jll_A          214 VSFNKPDSHGGVPIHHYQVDVKEVASE-----IWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQT  288 (389)
T ss_dssp             EEEECCSCCTTSCEEEEEEEEEETTCS-----CCEEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEEC
T ss_pred             EEEeCCCCCCCcceEEEEEEEEECCCc-----ccEEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEe
Confidence            999853221  12   24678776542     222233322345799999999999999999999999866443222222


Q ss_pred             CCC-CcCCCceeeccceeeecCCeEEEEEEEec---CCCCeEE--EEECCE-------Ec-CCCCeEEEeecCC--CceE
Q psy16863        645 MPK-NYRKPRFVESLKAVMTDDGLVSFECKVVG---FPTPTLQ--WFKDNE-------EL-KPGDVYQLTGTSS--LGSY  708 (1075)
Q Consensus       645 ~p~-~~~~p~~~~~~~~~~~~g~~~~l~C~v~g---~p~p~v~--W~k~g~-------~l-~~~~~~~~~~~~d--~G~Y  708 (1075)
                      .+. ...+|.+.    ........+.|....-.   .|.-.|.  |...+.       .+ .....+.+.+...  ...|
T Consensus       289 ~~~~~p~~p~~~----~~~~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~  364 (389)
T 2jll_A          289 LPVREPSPPSIH----GQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEV  364 (389)
T ss_dssp             CCCCCCCCCCEE----EEEETTTEEEEEECCCCCCSSCCCEEEEEEEC-----CCBCCEECTTCCEEEECSCCTTCEEEE
T ss_pred             cCCCCCCCCccc----cccCcCCEEEEEEECCCCCCCcccEEEEEEEeCCCCcceeEeeccCCcceEEeCCcCCCCEEEE
Confidence            221 12233321    12224556777775321   1222232  222111       11 1123455555443  3556


Q ss_pred             EEEEEecCceEEEE
Q psy16863        709 CCVAKNVMGKAESS  722 (1075)
Q Consensus       709 ~C~a~N~~g~~~~~  722 (1075)
                      ++.|.|..|....+
T Consensus       365 ~V~A~n~~G~s~~s  378 (389)
T 2jll_A          365 QITAANRLGYSEPT  378 (389)
T ss_dssp             EEEEEC-CCBCCCE
T ss_pred             EEEEEcCCcCCCce
Confidence            88999999975544

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.95  E-value=7.1e-26  Score=247.99  Aligned_cols=270  Identities=19%  Similarity=0.245  Sum_probs=199.5

Q ss_pred             CCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCC-CcEEEE-EcCCEEEEEEcccCCCCceeEEEEE
Q psy16863        347 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN-KIYRTQ-HDGNFYFIDLSSVSLFDSGRWTCLA  424 (1075)
Q Consensus       347 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~-~~g~~~~L~I~~v~~~d~G~Y~C~a  424 (1075)
                      +.+|.|+..+.+..+.+|++++|.|.+.|.|.+.|+|+|+|..+... .++.+. ..+..+.|.|.+++.+|+|.|+|.|
T Consensus         2 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a   81 (305)
T 2nzi_A            2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRA   81 (305)
T ss_dssp             CCCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEE
T ss_pred             CCCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEE
Confidence            35899999999999999999999999999999999999999998754 455554 3566778999999999999999999


Q ss_pred             EeCCCceeeEEEEEeecCCCCCCCeeeeec-ceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccCCC---------EEE
Q psy16863        425 ENAVGRSHCSCELSVLVPKAYKAPFFTKEL-EAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD---------IFA  494 (1075)
Q Consensus       425 ~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~-~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~---------~~~  494 (1075)
                      .|..|....++.|.|..++.+..|.+...+ ...+.+|+.+.|.|.+.|.|.+.+.|++++..+..+.         ...
T Consensus        82 ~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~  161 (305)
T 2nzi_A           82 TNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTS  161 (305)
T ss_dssp             EETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECSSEEE
T ss_pred             EcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcCCceE
Confidence            999999888889999877654444332222 2347789999999999999999999999999886543         346


Q ss_pred             EEeCC-CCCCCcEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEE
Q psy16863        495 LTANP-KDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQ  573 (1075)
Q Consensus       495 l~i~~-~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~  573 (1075)
                      |.+.. +...|+|.|+|.|.|..|....+..|.|.+.+                . +|....    .....+..+.|.|.
T Consensus       162 l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P----------------~-~p~~~~----~~~~~~~~v~l~w~  220 (305)
T 2nzi_A          162 LVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVP----------------D-PPRGVK----VSDVSRDSVNLTWT  220 (305)
T ss_dssp             EEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCC----------------C-CCEEEE----EESCCSSCEEEEEE
T ss_pred             EEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCC----------------C-CCCCce----eeeccCCEEEEEEc
Confidence            88888 99999999999999999999999999887421                1 121111    11234566777776


Q ss_pred             EecCCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceeeee
Q psy16863        574 VLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSA  638 (1075)
Q Consensus       574 ~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  638 (1075)
                      .........+.+|.-.........+....... ...|.|.++...+.|.|+|.|.|..|....+.
T Consensus       221 ~p~~~g~~~i~~y~v~~~~~~~~~w~~~~~~~-~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S~  284 (305)
T 2nzi_A          221 EPASDGGSKITNYIVEKCATTAERWLRVGQAR-ETRYTVINLFGKTSYQFRVIAENKFGLSKPSE  284 (305)
T ss_dssp             CCSCCSBSCEEEEEEEEEETTSCCEEEEEEES-SSEEEECSCCSSCEEEEEEEEEETTEECCCCC
T ss_pred             CCccCCCCceeEEEEEEecCCCCccEECcccc-CceEEecCCCCCCeEEEEEEEEeCCcccCCcC
Confidence            53221111233332222211222332222211 23789999999999999999999999876543

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.95  E-value=2.6e-27  Score=257.64  Aligned_cols=276  Identities=16%  Similarity=0.221  Sum_probs=204.3

Q ss_pred             CcccceeecceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCCCceeccCcEEEEecCCeEEEEEceeccCCC
Q psy16863        134 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDG  213 (1075)
Q Consensus       134 ~~p~~~~~~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~  213 (1075)
                      .+|.|...+.+..+.+|++++|.|.+.+.              +.|++++..     ++..........|.|.+++.+|+
T Consensus         3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~~--------------v~W~~~~~~-----~~~~~~~~~~~~L~i~~~~~~d~   63 (292)
T 4dkd_C            3 SIPVIEPSVPELVVKPGATVTLRCVGNGS--------------VEWDGPPSP-----HWTLYSDGSSSILSTNNATFQNT   63 (292)
T ss_dssp             -CCEEESCCSSCEECTTCCEEEEEECSSC--------------CCBCCCCCS-----SCEECCBTTEEEEEESSCCGGGC
T ss_pred             CCceecCCCCeEEEcCCCcEEEEEcCCCc--------------eEEccCCCC-----ceEEeccCceEEEEEcccccccC
Confidence            35777777888899999999999987652              678765432     23344445567999999999999


Q ss_pred             eEEEEEEEcCceeEEEEEEEeeeccCCCCCccccccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCcc
Q psy16863        214 GRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHP  293 (1075)
Q Consensus       214 G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~  293 (1075)
                      |.|+|.|.|..|..+..+.|.|..   .+..+...+.+..+.+|+.++|.|.+.++.         ....+.|+++++..
T Consensus        64 G~Y~C~~~n~~~~~~~~~~l~V~~---~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~---------~~~~v~W~~~~~~~  131 (292)
T 4dkd_C           64 GTYRCTEPGDPLGGSAAIHLYVKD---PARPWNVLAQEVVVFEDQDALLPCLLTDPV---------LEAGVSLVRVRGRP  131 (292)
T ss_dssp             SCEEECCCC----CCEEECCEECC---SSCCEEESCSEEEEETTSCEECCEEESSGG---------GGSSEEEEEGGGCC
T ss_pred             EEEEEEEccCCCCcceEEEEEEcC---ccccccccCCeEEEcCCCcEEEeeeCCCCC---------cceeEEEEecCCCc
Confidence            999999999888888888888863   122345566778899999999988877531         12568898876666


Q ss_pred             cc-CCCeEEEeeCCeEEEEEcccCCCCCEEEEEEEEeCCeeE-EEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEE
Q psy16863        294 IF-GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYS-TAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLV  371 (1075)
Q Consensus       294 ~~-~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C  371 (1075)
                      +. ..++.....+   .|.|.+++.+|+|.|+|.|.|..+.. +..+.|.|....+.+|.+...+....+.+|+.+.|.|
T Consensus       132 ~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C  208 (292)
T 4dkd_C          132 LMRHTNYSFSPWH---GFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVC  208 (292)
T ss_dssp             CCSSCCEECCSSS---CCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEE
T ss_pred             cccCCcccccCCc---eEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEE
Confidence            55 4444433222   39999999999999999999987754 4478888886555588888888888888999999999


Q ss_pred             EEecCC-CcEEEEEECCEecCCCCcEEEEEc--CCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeecCC
Q psy16863        372 EIRSPT-EIKIHWYRNDRKLEENKIYRTQHD--GNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPK  443 (1075)
Q Consensus       372 ~~~g~p-~~~v~W~k~g~~l~~~~~~~~~~~--g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~  443 (1075)
                      .+.+.| ++.+.|++++..+...........  .....|.|.+++.+|+|.|+|.|.|..|....++.|.|....
T Consensus       209 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~  283 (292)
T 4dkd_C          209 SASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESA  283 (292)
T ss_dssp             EEEESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred             EecCCCCceEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeCC
Confidence            998865 468999999987765443322211  123479999999999999999999999998888888877543

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.95  E-value=2.3e-27  Score=261.01  Aligned_cols=256  Identities=14%  Similarity=0.128  Sum_probs=178.9

Q ss_pred             CCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEe
Q psy16863        347 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       347 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      ..+|.|...+. ..+.+|++++|.|.+.+. .+.+.|+|+|..+.....    .......|.|.+++.+|+|.|+|.|.|
T Consensus        22 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~~   95 (316)
T 3vh8_G           22 QDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFH----GRIFQESFNMSPVTTAHAGNYTCRGSH   95 (316)
T ss_dssp             --CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHH----HCCBSSCEEECSCCGGGCEEEEEEEBC
T ss_pred             CCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceeec----CCcceEEEEECCCCcccCeEEEEEEEc
Confidence            35788877766 678899999999999877 689999999987643211    011122488999999999999999987


Q ss_pred             CCC-----ceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccC----------CC
Q psy16863        427 AVG-----RSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA----------GD  491 (1075)
Q Consensus       427 ~~g-----~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~----------~~  491 (1075)
                      ..+     ..+....|.|...  ..+|.+...+...+.+|+.++|.|.+. .+.+.+.|+|+|..+..          ..
T Consensus        96 ~~~~~~~~~~s~~~~l~V~~~--~~~p~~~~~~~~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~  172 (316)
T 3vh8_G           96 PHSPTGWSAPSNPVVIMVTGN--HRKPSLLAHPGPLVKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQIHDGVS  172 (316)
T ss_dssp             SSSSSSBCCCCCCEEEEEECS--SCCCEEEEESCSEEETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECEEETTEE
T ss_pred             CCCCcceecCCCcEEEEEecC--CCCCeEEecCCCccCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeeeecCCCc
Confidence            432     2233455555543  345666666555688999999999995 46679999999988743          13


Q ss_pred             EEEEEeCCCCCCCcEEEEEEEEecceee-----EEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCC
Q psy16863        492 IFALTANPKDPSSLGTYTCEAVNCMGAA-----FSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGT  566 (1075)
Q Consensus       492 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-----~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~  566 (1075)
                      ...|.|..+..+|+|.|+|.|.|..|..     .....|.|...                 .++|.+...+. ..+.+|+
T Consensus       173 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~-----------------~~~p~i~~~~~-~~v~~G~  234 (316)
T 3vh8_G          173 KANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGP-----------------YEKPSLSAQPG-PKVQAGE  234 (316)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECS-----------------SCCCEEEEESC-SCCCTTS
T ss_pred             eEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCC-----------------CCCCeEEeCCC-CeecCCC
Confidence            4579999999999999999999988742     33455655421                 13445544433 3678999


Q ss_pred             eEEEEEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCc
Q psy16863        567 SAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGV  633 (1075)
Q Consensus       567 ~~~L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  633 (1075)
                      .++|.|.+.. |.+ .+.|++++..+...........+.....|.|.+++  |+|.|+|.|.|..+.
T Consensus       235 ~v~L~C~~~~-~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~  297 (316)
T 3vh8_G          235 SVTLSCSSRS-SYD-MYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSP  297 (316)
T ss_dssp             CCEEEEEESS-CCS-EEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBT
T ss_pred             cEEEEEECCC-CCc-EEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCc
Confidence            9999999974 445 89999999876532222222223233589999999  999999999998764

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.95  E-value=2.2e-28  Score=272.39  Aligned_cols=272  Identities=15%  Similarity=0.250  Sum_probs=202.7

Q ss_pred             CCCeeeeeccceEeecCCeEEEEEEEe-------cCCCCceEEEEeCCeEE--ecCCcEEEEEcCCceEEEEEeeeeecC
Q psy16863        549 PAPIFIKEVENVKAKIGTSAILECQVL-------VPPWPRSIYWYNKEGVV--EASDKYHIMADGLGGYSIEINYLEAVD  619 (1075)
Q Consensus       549 ~~~~~~~~~~~~~v~~G~~~~L~C~~~-------~~p~p~~v~W~~~~~~i--~~~~~~~~~~~~~~~~~L~i~~~~~~d  619 (1075)
                      ..|.+...+.+..+.+|+.+.|.|.+.       +.|.+ .|.|++++..+  ....+.++...+   ..|.|.+++.+|
T Consensus        17 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~---~~L~i~~v~~~D   92 (339)
T 3o4o_C           17 SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRI-NLTWHKNDSARTVPGEEETRMWAQD---GALWLLPALQED   92 (339)
T ss_dssp             -CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCC-BCCCEESSCCSCCSCCSSSCEEEET---TEEEESSBCTTC
T ss_pred             hhHhhCcCceEEEEECCccEEEEeccccccccccCCCCc-eEEEEECCCCcccCccccccEEeeC---CeEEECCCCccc
Confidence            457788888999999999999999998       77766 89999999873  332223332222   179999999999


Q ss_pred             CceEEEEEECCCCceeeeeEEEEEeCCCCcCCCceeeccceeeecCCeEEEEEE-----EecCCCCeEEEEECCEEcCCC
Q psy16863        620 DGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECK-----VVGFPTPTLQWFKDNEELKPG  694 (1075)
Q Consensus       620 ~G~Y~C~a~n~~g~~~~~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~l~C~-----v~g~p~p~v~W~k~g~~l~~~  694 (1075)
                      +|.|+|.+.|..|... ....|.|..++....+.+.  ....+..|+.+.|.|.     +.|.|.+.++|+|+|..+..+
T Consensus        93 ~G~Y~C~~~n~~g~~~-~~~~l~V~~~~~~~~~~~~--~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~  169 (339)
T 3o4o_C           93 SGTYVCTTRNASYCDK-MSIELRVFENTDAFLPFIS--YPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKD  169 (339)
T ss_dssp             CEEEECCEEETTEEEE-EEEEEEEECSCGGGHHHHC--EEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTT
T ss_pred             CEEEEEEEECCcceEE-EEEEEEEEcCCCccccccc--cceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCC
Confidence            9999999999988654 3456667665432211111  1235678999999999     788999999999999988654


Q ss_pred             -C---------eEEEe--ecCCCceEEEEEEecCc----eEEEEEEEEEEeccccCchhhhhhhccCCCCCeEEecccee
Q psy16863        695 -D---------VYQLT--GTSSLGSYCCVAKNVMG----KAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSC  758 (1075)
Q Consensus       695 -~---------~~~~~--~~~d~G~Y~C~a~N~~g----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  758 (1075)
                       .         .+.+.  ..+|.|.|+|.|.|..|    .....+.|.|.....             ..+|.+...+...
T Consensus       170 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~-------------~~~P~i~~~~~~~  236 (339)
T 3o4o_C          170 NEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKE-------------ETIPVIISPLKTI  236 (339)
T ss_dssp             CSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCC-------------CCCCEECCCSCCC
T ss_pred             CceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCC-------------CCCCEEecCCcee
Confidence             2         34443  23789999999999988    456677888875321             1477888777778


Q ss_pred             eeecCCeEEEEEEE---ecCC-CCeEEEEECCEEeec---------CCcEEEEEeeCc--EEEEEEccccCCCC-eEEEE
Q psy16863        759 QATVNEEFKFTVQV---SISP-EPKVSWFRDDQQVVE---------SDNVKILKETLG--VCHLKIHALEVADQ-AEWKC  822 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v---~g~p-~p~v~W~k~g~~i~~---------~~~~~~~~~~~~--~~~L~I~~~~~~D~-G~Y~C  822 (1075)
                      .+..|+.+.|.|.+   .|.| .+.+.|+++|.++..         +.++.+...+..  ...|.|.+++.+|+ |.|+|
T Consensus       237 ~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C  316 (339)
T 3o4o_C          237 SASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKC  316 (339)
T ss_dssp             CCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEE
T ss_pred             EeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEE
Confidence            89999999999999   8999 889999999987642         233322222211  22699999999997 99999


Q ss_pred             EEEeCCceEEEEEEEEEE
Q psy16863        823 IATNDFGQSITSCFLKLN  840 (1075)
Q Consensus       823 ~A~N~~G~~~~s~~l~V~  840 (1075)
                      .|.|.+|.+...+.+.+.
T Consensus       317 ~a~N~~G~~~~~~~~~~~  334 (339)
T 3o4o_C          317 VVHNTLSFQTLRTTVKEH  334 (339)
T ss_dssp             EEEETTEEECCBCCCCC-
T ss_pred             EEEeccCceEEEEEhhHh
Confidence            999999998777665543

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.94  E-value=1.1e-26  Score=252.14  Aligned_cols=264  Identities=15%  Similarity=0.169  Sum_probs=177.5

Q ss_pred             eeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCC-EEEEEEcccCCCCceeEEEEEEeCCC
Q psy16863        351 AFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGN-FYFIDLSSVSLFDSGRWTCLAENAVG  429 (1075)
Q Consensus       351 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~-~~~L~I~~v~~~d~G~Y~C~a~n~~g  429 (1075)
                      .|.....+..+.+|++++|.|.+.+.    |+|+|+|..+.  .+.....++. ...|.|.+++.+|+|.|+|.|.|..|
T Consensus         2 ~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g   75 (289)
T 3mjg_X            2 VVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPP--QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRG   75 (289)
T ss_dssp             CBCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCS--EEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC---
T ss_pred             eecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCcc--cceeccCCCceeEEEEEccCChhhCEEEEEEEcccCC
Confidence            34444566789999999999999764    99999998874  2233333332 36899999999999999999999887


Q ss_pred             c-eeeEEEEEeecCCCCCCCeeeeecc---eEEecCCeEEEEEEEECCCCCeEEEEeCC--EeccCC--CEEEEEeCCCC
Q psy16863        430 R-SHCSCELSVLVPKAYKAPFFTKELE---AILTEQGTVSLECKVMGIPTPQLIWYKDN--KKIKAG--DIFALTANPKD  501 (1075)
Q Consensus       430 ~-~~~s~~l~V~~~~~~~~p~~~~~~~---~~~~~g~~v~l~C~~~g~p~~~v~W~~~g--~~l~~~--~~~~l~i~~~~  501 (1075)
                      . ...+..+.|.+... ..|.+.....   ..+.+|+.+.|.|.+. .|.+.++|++++  ..+...  ....+.    .
T Consensus        76 ~~~~~~~~~~v~v~~p-~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~~~~~~~~~----~  149 (289)
T 3mjg_X           76 LETDERKRLYIFVPDP-TVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVPYDHQRGFS----G  149 (289)
T ss_dssp             ---CCCEEEEEECCCT-TCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCCEETTTEEE----E
T ss_pred             CCcCcEEeEEEEEECC-CcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccceeecCCcCee----e
Confidence            6 22344455554321 1122222222   3478999999999998 688889998865  333211  001111    3


Q ss_pred             CCCcEEEEEEEEecceeeEEE-EEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEecCCCC
Q psy16863        502 PSSLGTYTCEAVNCMGAAFST-SRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWP  580 (1075)
Q Consensus       502 ~~d~G~Y~C~a~n~~g~~~~~-~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p  580 (1075)
                      ..|+|.|+|.|.|..+...+. ..+.|..                  ..+|.+...+....+.+|+.++|.|.+.+.|.|
T Consensus       150 ~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~------------------~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p  211 (289)
T 3mjg_X          150 IFEDRSYICKTTIGDREVDSDAYYVYRLQ------------------VSSINVSVNAVQTVVRQGENITLMCIVIGNEVV  211 (289)
T ss_dssp             CCCSSEEEEEEEETTEEEECCCEEEEECC------------------CCCCCCEEEESCSEEETTSCEEEEEEEESCSSB
T ss_pred             eccCcEEEEEEEeCCceeeeeeEEEEecC------------------CCCCCcEEeCCcceeEcCCCEEEEEEECCCCCc
Confidence            568999999999887765443 3455431                  134555555566789999999999999998877


Q ss_pred             ceEEEEeCCeEEecCCcEEEEEc----CCceEEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEEeCC
Q psy16863        581 RSIYWYNKEGVVEASDKYHIMAD----GLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP  646 (1075)
Q Consensus       581 ~~v~W~~~~~~i~~~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~p  646 (1075)
                       .+.|+++++.............    ......|.|.+++.+|+|.|+|.|.|..|.... ...|.|...
T Consensus       212 -~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~-~~~l~v~~~  279 (289)
T 3mjg_X          212 -NFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQD-EKAINITVV  279 (289)
T ss_dssp             -EEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEE-EEEEEEEEE
T ss_pred             -ceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCcee-EEEEEEEEE
Confidence             8999987764332211111111    123468999999999999999999999999774 456666543

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.94  E-value=1.4e-26  Score=254.80  Aligned_cols=282  Identities=14%  Similarity=0.097  Sum_probs=176.9

Q ss_pred             cCCeeEEEEEEEEEeecCCCcccceeecceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCCCceeccCcEEE
Q psy16863        115 NESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRA  194 (1075)
Q Consensus       115 n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~~~~~~~~~~~~  194 (1075)
                      +.+|.+.......++....++|.|...+. ..|.+|++++|.|.+.+.           .+.+.|+++|..+....    
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-----------~~~~~W~k~g~~~~~~~----   67 (316)
T 3vh8_G            4 HHHGSGSDDDDKGSHMGGQDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-----------FNNFMLYKEDRIHIPIF----   67 (316)
T ss_dssp             --------------------CCEEEEESC-SEEETTSCEEEEEEBTTB-----------CCSEEEEESSCSSSCHH----
T ss_pred             ccCCCCCCCcccccccCCCCCCEeeccCC-CccCCCCCEEEEEEccCC-----------CceEEEEeCCCccceee----
Confidence            34444433333334433345677766665 678899999999988653           36889999986543211    


Q ss_pred             EecCCeEEEEEceeccCCCeEEEEEEEcCc-----eeEEEEEEEeeeccCCCCCccccccccceeeccceeEEEEEecCC
Q psy16863        195 INRDGRTELNIRRVRRDDGGRYSVTASNES-----GYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSP  269 (1075)
Q Consensus       195 ~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~-----g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~g~~~~l~c~~~~~  269 (1075)
                      ........|.|.+++.+|+|.|+|.|.|..     +..+..+.|.|... +.+|.+...+. ..+.+|+.++|.|.+.. 
T Consensus        68 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~-~~~p~~~~~~~-~~v~~G~~v~L~C~~~~-  144 (316)
T 3vh8_G           68 HGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGN-HRKPSLLAHPG-PLVKSGERVILQCWSDI-  144 (316)
T ss_dssp             HHCCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECS-SCCCEEEEESC-SEEETTCCEEEEEEESS-
T ss_pred             cCCcceEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecC-CCCCeEEecCC-CccCCCCeEEEEEcCCC-
Confidence            011223479999999999999999998632     23345567777532 23455544433 34889999999998753 


Q ss_pred             CceEEEEecCCCeeeEEecCCCccccCCC-eEEEeeCCeEEEEEcccCCCCCEEEEEEEEeCCee-----EEEEEEEEEe
Q psy16863        270 TEIKCQFDLNNTIPFSFRAQGDHPIFGNR-FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGY-----STAKFELSVE  343 (1075)
Q Consensus       270 ~~~~c~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~-----~~~~~~l~V~  343 (1075)
                                ++..+.||+++........ ...........|.|.+++.+|+|.|+|.|.|..|.     .+..+.|.|.
T Consensus       145 ----------~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~  214 (316)
T 3vh8_G          145 ----------MFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVT  214 (316)
T ss_dssp             ----------CCSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEE
T ss_pred             ----------CCcEEEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEec
Confidence                      3457888887765433211 11111223458999999999999999999998763     2555677776


Q ss_pred             cCCCCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcC-CEEEEEEcccCCCCceeEEE
Q psy16863        344 SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDG-NFYFIDLSSVSLFDSGRWTC  422 (1075)
Q Consensus       344 ~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g-~~~~L~I~~v~~~d~G~Y~C  422 (1075)
                      . ...+|.+...+ ...+.+|++++|.|.+. .|.+.+.|+|+|..+...........+ ....|.|.+++  |+|.|+|
T Consensus       215 ~-~~~~p~i~~~~-~~~v~~G~~v~L~C~~~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C  289 (316)
T 3vh8_G          215 G-PYEKPSLSAQP-GPKVQAGESVTLSCSSR-SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRC  289 (316)
T ss_dssp             C-SSCCCEEEEES-CSCCCTTSCCEEEEEES-SCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEE
T ss_pred             C-CCCCCeEEeCC-CCeecCCCcEEEEEECC-CCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEE
Confidence            4 23456665544 34789999999999996 467899999999877532221112222 23579999999  9999999


Q ss_pred             EEEeCCCc
Q psy16863        423 LAENAVGR  430 (1075)
Q Consensus       423 ~a~n~~g~  430 (1075)
                      .|.|..+.
T Consensus       290 ~a~n~~~~  297 (316)
T 3vh8_G          290 FGSFRHSP  297 (316)
T ss_dssp             EEEBTTBT
T ss_pred             EeecCCCc
Confidence            99997664

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.94  E-value=1.7e-26  Score=251.25  Aligned_cols=264  Identities=15%  Similarity=0.180  Sum_probs=197.6

Q ss_pred             CCCccccccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCccccCCCeEEEeeCCeEEEEEcccCCCCC
Q psy16863        241 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDG  320 (1075)
Q Consensus       241 ~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~  320 (1075)
                      .+|.|...+.+..+.+|+.++|.|.+.+.              +.|++.+.     .++.+...+....|.|.+++.+|+
T Consensus         3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~~--------------v~W~~~~~-----~~~~~~~~~~~~~L~i~~~~~~d~   63 (292)
T 4dkd_C            3 SIPVIEPSVPELVVKPGATVTLRCVGNGS--------------VEWDGPPS-----PHWTLYSDGSSSILSTNNATFQNT   63 (292)
T ss_dssp             -CCEEESCCSSCEECTTCCEEEEEECSSC--------------CCBCCCCC-----SSCEECCBTTEEEEEESSCCGGGC
T ss_pred             CCceecCCCCeEEEcCCCcEEEEEcCCCc--------------eEEccCCC-----CceEEeccCceEEEEEcccccccC
Confidence            46777788888999999999999987642              56664332     233444456677999999999999


Q ss_pred             EEEEEEEEeCCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecCCC-cEEEEEEC-CEecCCCCcEEE
Q psy16863        321 GRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTE-IKIHWYRN-DRKLEENKIYRT  398 (1075)
Q Consensus       321 G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~-~~v~W~k~-g~~l~~~~~~~~  398 (1075)
                      |.|+|.|.|..|..+..+.|.|..   .+..+...+....+.+|+++.|.|.+.+.+. +.|+|+++ +..+....++..
T Consensus        64 G~Y~C~~~n~~~~~~~~~~l~V~~---~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~  140 (292)
T 4dkd_C           64 GTYRCTEPGDPLGGSAAIHLYVKD---PARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSF  140 (292)
T ss_dssp             SCEEECCCC----CCEEECCEECC---SSCCEEESCSEEEEETTSCEECCEEESSGGGGSSEEEEEGGGCCCCSSCCEEC
T ss_pred             EEEEEEEccCCCCcceEEEEEEcC---ccccccccCCeEEEcCCCcEEEeeeCCCCCcceeEEEEecCCCccccCCcccc
Confidence            999999999888778888888874   1223455567788999999999999987322 78999998 566666666555


Q ss_pred             EEcCCEEEEEEcccCCCCceeEEEEEEeCCCcee-eEEEEEeecCCCCCCCeeeeecceE-EecCCeEEEEEEEECCCC-
Q psy16863        399 QHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSH-CSCELSVLVPKAYKAPFFTKELEAI-LTEQGTVSLECKVMGIPT-  475 (1075)
Q Consensus       399 ~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~-~s~~l~V~~~~~~~~p~~~~~~~~~-~~~g~~v~l~C~~~g~p~-  475 (1075)
                      ..++.   |.|.+++.+|+|.|+|.|.|..|... ..+.|.|..... .+|.+...+... +.+|+.+.|.|.+.+.|+ 
T Consensus       141 ~~~~~---L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~-~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~  216 (292)
T 4dkd_C          141 SPWHG---FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIP-GPPALTLVPAELVRIRGEAAQIVCSASSVDVN  216 (292)
T ss_dssp             CSSSC---CEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCC-SSCEEEEESSCBCCCSSSCEEEEEEEEESSSC
T ss_pred             cCCce---EEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCC-CCCeEEccCCceeEecCCCEEEEEEecCCCCc
Confidence            44444   88999999999999999999877553 367777775321 245555554443 578999999999998775 


Q ss_pred             CeEEEEeCCEeccCCC-----------EEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEecc
Q psy16863        476 PQLIWYKDNKKIKAGD-----------IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQ  530 (1075)
Q Consensus       476 ~~v~W~~~g~~l~~~~-----------~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~  530 (1075)
                      +.+.|++++..+....           ...|.|..+..+|+|.|+|.|.|..|....++.|.|.+.
T Consensus       217 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~  282 (292)
T 4dkd_C          217 FDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVES  282 (292)
T ss_dssp             CEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC---
T ss_pred             eEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeC
Confidence            4789999998765322           237999999999999999999999999999998888743

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.94  E-value=3.8e-26  Score=232.36  Aligned_cols=177  Identities=20%  Similarity=0.329  Sum_probs=143.7

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEec-CCCCeEEEEECCEEeecCCcEEEEEee-CcEEEEEEccccCCCCeEEEEEEE
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKET-LGVCHLKIHALEVADQAEWKCIAT  825 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g-~p~p~v~W~k~g~~i~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~A~  825 (1075)
                      +|.|..++ +..+.+|+.+.|.|.+.+ .|.|.|+|+|||++|..+.++.+..+. .+.+.|.|.+++.+|+|.|+|.|.
T Consensus         3 ~p~~~~~~-~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~   81 (207)
T 3rbs_A            3 DPFTKSEL-AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQ   81 (207)
T ss_dssp             ---CCEEE-EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEE
T ss_pred             CCeeecCC-ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEE
Confidence            67777766 577899999999999974 799999999999999988888877643 467889999999999999999999


Q ss_pred             eCCceEEEEEEEEEEecC----------------CCCCCeeeeecceeecCCCeEEEEEEEEcc-CCCeeEEEECCEEcC
Q psy16863        826 NDFGQSITSCFLKLNVPK----------------HYKKPKFLEELKAVLSEGGAVNLECKVIGV-PQPTLKWFKDGRELK  888 (1075)
Q Consensus       826 N~~G~~~~s~~l~V~~~~----------------~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~-p~p~v~W~k~g~~l~  888 (1075)
                      |  |.+...+.+.+....                ...+|.|...+...+.+|+.+.|.|.+.|. |.|.|+|+|||.+|.
T Consensus        82 N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~  159 (207)
T 3rbs_A           82 D--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREIS  159 (207)
T ss_dssp             E--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEEC
T ss_pred             C--CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecCCcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECC
Confidence            9  666555554321100                012678877776568899999999999999 999999999999996


Q ss_pred             CCC-------eeEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEE
Q psy16863        889 AGD-------IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLG  927 (1075)
Q Consensus       889 ~~~-------~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v  927 (1075)
                      .+.       ...|.+......|+|.|+|.|.|.+|.+++++.|.+
T Consensus       160 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~  205 (207)
T 3rbs_A          160 VDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  205 (207)
T ss_dssp             CCCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             CCCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence            542       345888888899999999999999999999998865

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.94  E-value=1e-25  Score=240.81  Aligned_cols=250  Identities=16%  Similarity=0.175  Sum_probs=183.4

Q ss_pred             CCCCeeeeecCceeeccCCeEEEEEEEec-CCCc--EEEEEECCEecCCCCcEEEEEcCCEEE-EEEcccCCCCce--eE
Q psy16863        347 PDAPAFIRRLHDIAVKVGTRARLLVEIRS-PTEI--KIHWYRNDRKLEENKIYRTQHDGNFYF-IDLSSVSLFDSG--RW  420 (1075)
Q Consensus       347 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g-~p~~--~v~W~k~g~~l~~~~~~~~~~~g~~~~-L~I~~v~~~d~G--~Y  420 (1075)
                      +.+|.+..   +..+.+|++++|.|.+.| .|.+  .|+|+|+|..+..    .+..++.... ..+..++.+|+|  .|
T Consensus         4 ~~~p~~~~---~~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~----~~~~~~~~~~~~~~~~~~~~d~g~g~Y   76 (265)
T 2oz4_A            4 ATPPQLVS---PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTYGNDSFSAKASVSVTAEDEGTQRL   76 (265)
T ss_dssp             SSCCEEEC---CSEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC----EEEECSSEEEEEEEEEECGGGCEEEEE
T ss_pred             CCCCcccc---CceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc----eEeeCCCeEEEEeecccccccCCcceE
Confidence            34555543   347899999999999998 7766  9999999998865    2334444322 222233777887  59


Q ss_pred             EEEEEeCCCceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccC-CCEEEEEeCC
Q psy16863        421 TCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA-GDIFALTANP  499 (1075)
Q Consensus       421 ~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~-~~~~~l~i~~  499 (1075)
                      +|.|.|..|....++.|.|...|.   |.+... ...+.+|+.+.|.|.+.  |.+.++|  +|..+.. +....|.+..
T Consensus        77 ~C~a~n~~~~~~~~~~l~V~~~p~---p~~~~~-~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~~~~~l~i~~  148 (265)
T 2oz4_A           77 TCAVILGNQSQETLQTVTIYSFPA---PNVILT-KPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLGPRAQLLLKA  148 (265)
T ss_dssp             EEEEEETTEEEEEEEEEEEECCCC---CEEEES-CSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCSSEECCEEEC
T ss_pred             EEEEecCCCCcEEEEEEEEeCCCC---ceeecC-CceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCCCcEEEEEcc
Confidence            999999999988888999876543   344432 34578899999999998  8899999  8888753 4566788888


Q ss_pred             CCCCCcEEEEEEEEecc-eeeE---EEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEe
Q psy16863        500 KDPSSLGTYTCEAVNCM-GAAF---STSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVL  575 (1075)
Q Consensus       500 ~~~~d~G~Y~C~a~n~~-g~~~---~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~  575 (1075)
                      ...+|+|.|+|.|.|.. |...   ....|.|..++.                  ......+.+..+.+|+.++|.|.+.
T Consensus       149 ~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~------------------~~~~~~p~~~~v~~g~~~~l~C~~~  210 (265)
T 2oz4_A          149 TPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPR------------------LDERDCPGNWTWPENSQQTPMCQAW  210 (265)
T ss_dssp             CGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEE------------------CCGGGSCSEEEEETTCEECCCCCCE
T ss_pred             ccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCc------------------cccccCCCccEEcCCCeEEEEeECc
Confidence            99999999999999655 6655   556677763211                  1111224567889999999999999


Q ss_pred             cCCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEEeC
Q psy16863        576 VPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLM  645 (1075)
Q Consensus       576 ~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~  645 (1075)
                      |.|.| .+.|++++..+.        ..+    .|  ..++.+|+|.|+|.|.|..|... ....|.|..
T Consensus       211 g~P~p-~i~W~~~~~~~~--------~~g----~~--~~v~~~d~G~Y~C~a~N~~G~~~-~~~~l~V~~  264 (265)
T 2oz4_A          211 GNPLP-ELKCLKDGTFPL--------PIG----ES--VTVTRDLEGTYLCRARSTQGEVT-REVTVNVLS  264 (265)
T ss_dssp             EESCC-EEEEEETTTEEC--------CTT----SC--EECCGGGCEEEEEEEEETTEEEE-EEEEEEEEC
T ss_pred             cCCCC-eEEEEECCcccC--------CCC----cE--EEeehhhCeEEEEEEECCCCcEE-EEEEEEEec
Confidence            99988 899999988322        122    11  24788999999999999998865 345666654

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.94  E-value=3.6e-26  Score=253.65  Aligned_cols=267  Identities=14%  Similarity=0.179  Sum_probs=189.6

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecC----CCcEEEEEECCE--e-------------c--CCCCcEEEE-EcCCEEE
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSP----TEIKIHWYRNDR--K-------------L--EENKIYRTQ-HDGNFYF  406 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~----p~~~v~W~k~g~--~-------------l--~~~~~~~~~-~~g~~~~  406 (1075)
                      ++.++..+..+.+.+|++++|.|.+.+.    +.+.|.|+|++.  .             +  ....++.+. .......
T Consensus        14 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   93 (331)
T 3u83_A           14 PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGT   93 (331)
T ss_dssp             -------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCC
T ss_pred             CcceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCce
Confidence            4455666778899999999999999776    456899999651  1             1  122344332 1122345


Q ss_pred             EEEcccCCCCceeEEEE-EEeCCCceeeEEEEEeecCCCCCCCeee-eecceEEecC---CeEEEEEE-EECCCCCeEEE
Q psy16863        407 IDLSSVSLFDSGRWTCL-AENAVGRSHCSCELSVLVPKAYKAPFFT-KELEAILTEQ---GTVSLECK-VMGIPTPQLIW  480 (1075)
Q Consensus       407 L~I~~v~~~d~G~Y~C~-a~n~~g~~~~s~~l~V~~~~~~~~p~~~-~~~~~~~~~g---~~v~l~C~-~~g~p~~~v~W  480 (1075)
                      |.|.+++.+|+|.|+|. +.|..|.....+.|.|..+|..   .+. ......+.+|   +.+.|.|. +.+.|.+.++|
T Consensus        94 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~---~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W  170 (331)
T 3u83_A           94 IRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTN---WIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSW  170 (331)
T ss_dssp             EEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEE---EEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEE
T ss_pred             EEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcc---eeecCCCceeecCCCccceEEEEEEecCCcCCceEEE
Confidence            99999999999999998 5666777778888888876532   111 1222336777   78999998 88999999999


Q ss_pred             EeCCE--ec-----cCCCE----EEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCC
Q psy16863        481 YKDNK--KI-----KAGDI----FALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGP  549 (1075)
Q Consensus       481 ~~~g~--~l-----~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~  549 (1075)
                      ++++.  ..     .....    ..|.+..+...|+|.|+|.|.|..|....++.|.|..+                   
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~-------------------  231 (331)
T 3u83_A          171 ETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYE-------------------  231 (331)
T ss_dssp             EESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEE-------------------
T ss_pred             EcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecC-------------------
Confidence            99532  21     11221    35888888999999999999999999888888877632                   


Q ss_pred             CCeeeeeccceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEe-eeeecCCceEEEEEE
Q psy16863        550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEIN-YLEAVDDGEWKCVAT  628 (1075)
Q Consensus       550 ~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~-~~~~~d~G~Y~C~a~  628 (1075)
                      |......+....+.+|+.++|.|.+.+.|.|..+.|+++++.+....  . ..++    .|.|. ++..+|+|.|+|.|.
T Consensus       232 P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~--~-~~~~----~L~i~~~v~~~d~G~Y~C~a~  304 (331)
T 3u83_A          232 PEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGV--E-AQNR----TLFFKGPINYSLAGTYICEAT  304 (331)
T ss_dssp             EEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE--E-EETT----EEEECSCCCGGGCEEEEEEEE
T ss_pred             CeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccc--e-ecCc----EEEEeCCCccccCeEEEEEEE
Confidence            22223344555688899999999999999884499999998875442  1 2222    79999 999999999999999


Q ss_pred             CCCCceeeeeEEEEEeC
Q psy16863        629 SSSGVKQFSAAYVHVLM  645 (1075)
Q Consensus       629 n~~g~~~~~~~~l~v~~  645 (1075)
                      |..|... ....|.|..
T Consensus       305 N~~G~~~-~~~~l~V~~  320 (331)
T 3u83_A          305 NPIGTRS-GQVEVNITE  320 (331)
T ss_dssp             ETTEEEE-EEEEECCBC
T ss_pred             eccccce-EEEEEEEec
Confidence            9999864 334454443

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.94  E-value=6.7e-26  Score=251.46  Aligned_cols=273  Identities=16%  Similarity=0.190  Sum_probs=195.5

Q ss_pred             CccccccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCc---------------c--ccCCCeEEE-ee
Q psy16863        243 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDH---------------P--IFGNRFRAI-NR  304 (1075)
Q Consensus       243 p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~---------------~--~~~~~~~~~-~~  304 (1075)
                      +.++..+.++.+.+|+.++|.|.+..+..      ..+...+.|++++..               .  ....++.+. ..
T Consensus        15 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~------~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~   88 (331)
T 3u83_A           15 SQVVQVNDSMYGFIGTDVVLHCSFANPLP------SVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPS   88 (331)
T ss_dssp             ------CEEEEEETTCCEEECCBCSSCCS------SCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCS
T ss_pred             cceEEcCCcEEEEecCCEEEeeecCCCCC------CCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccC
Confidence            44566677789999999999998775410      012334566663211               1  013444443 12


Q ss_pred             CCeEEEEEcccCCCCCEEEEEE-EEeCCeeEEEEEEEEEecCCCCCCeee--eecCceeeccC---CeEEEEEE-EecCC
Q psy16863        305 DGRTELNIRRVRRDDGGRYSVT-ASNESGYSTAKFELSVESQVPDAPAFI--RRLHDIAVKVG---TRARLLVE-IRSPT  377 (1075)
Q Consensus       305 ~~~~~L~I~~~~~~d~G~Y~C~-a~n~~g~~~~~~~l~V~~~~~~~p~~~--~~~~~~~v~~G---~~v~l~C~-~~g~p  377 (1075)
                      .+..+|.|.+++.+|+|.|+|. +.|..|..+..+.|.|..    +|.+.  .......+.+|   +.+.|.|. ..+.|
T Consensus        89 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~----~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p  164 (331)
T 3u83_A           89 FTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMA----KPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKP  164 (331)
T ss_dssp             SSBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEB----CCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBS
T ss_pred             CCCceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEec----CCcceeecCCCceeecCCCccceEEEEEEecCCcC
Confidence            2345799999999999999998 566778888888999985    55552  34566788888   78999998 78899


Q ss_pred             CcEEEEEECCEecCCCCcEEEEEcCCE---EEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeecCCCCCCCeeeeec
Q psy16863        378 EIKIHWYRNDRKLEENKIYRTQHDGNF---YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKEL  454 (1075)
Q Consensus       378 ~~~v~W~k~g~~l~~~~~~~~~~~g~~---~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~  454 (1075)
                      .+.++|+|++....... .....++..   ..|.|.++..+|+|.|+|.|.|..|....++.|.|..+|.    ......
T Consensus       165 ~~~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~----~~~~~~  239 (331)
T 3u83_A          165 PSVVSWETRLKGEAEYQ-EIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPE----VTIEGF  239 (331)
T ss_dssp             CCEEEEEESSCCEEEEE-EEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEE----EEEECC
T ss_pred             CceEEEEcCCCCccccc-eeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCe----EEEecC
Confidence            99999999642221100 011112222   3688999999999999999999999888888888876653    122222


Q ss_pred             -ceEEecCCeEEEEEEEECCCCCe-EEEEeCCEeccCCCE---EEEEeC-CCCCCCcEEEEEEEEecceeeEEEEEEEEe
Q psy16863        455 -EAILTEQGTVSLECKVMGIPTPQ-LIWYKDNKKIKAGDI---FALTAN-PKDPSSLGTYTCEAVNCMGAAFSTSRVIAR  528 (1075)
Q Consensus       455 -~~~~~~g~~v~l~C~~~g~p~~~-v~W~~~g~~l~~~~~---~~l~i~-~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~  528 (1075)
                       ...+.+|+.+.|.|.+.|.|.+. |.|++++..+.....   ..|.|. .+..+|+|.|+|.|.|..|....++.|.|.
T Consensus       240 ~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  319 (331)
T 3u83_A          240 DGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT  319 (331)
T ss_dssp             CSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEEEETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCB
T ss_pred             CCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccceecCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEe
Confidence             23377899999999999999997 999999998876532   268898 899999999999999999999998888887


Q ss_pred             cc
Q psy16863        529 GQ  530 (1075)
Q Consensus       529 ~~  530 (1075)
                      ..
T Consensus       320 ~~  321 (331)
T 3u83_A          320 EA  321 (331)
T ss_dssp             C-
T ss_pred             cc
Confidence            43

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.94  E-value=2.2e-25  Score=226.42  Aligned_cols=183  Identities=22%  Similarity=0.344  Sum_probs=157.8

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecC-CcEEEEEeeCcEEEEEEccccCCCCeEEEEEEE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVES-DNVKILKETLGVCHLKIHALEVADQAEWKCIAT  825 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~  825 (1075)
                      .||.|...+.+..+.+|+.+.|.|.+.+.|.+.++|+|+|.++... .++.+.....+.+.|.|.+++.+|+|.|+|.|.
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEE
Confidence            5899999999999999999999999999999999999999998754 567776666677899999999999999999999


Q ss_pred             eCCceEEEEEEEEEEecCCCCCCeeeeecce-eecCCCeEEEEEEEEccCCCeeEEEECCEEcCCCCe---------eEE
Q psy16863        826 NDFGQSITSCFLKLNVPKHYKKPKFLEELKA-VLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDI---------HKI  895 (1075)
Q Consensus       826 N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~-~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~---------~~i  895 (1075)
                      |..|....++.|.|..++.+..|.+...+.. .+.+|+.++|.|.+.|.|.|.|+|+|+|..+..+.+         ..|
T Consensus        83 n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L  162 (197)
T 2j8h_A           83 NQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSL  162 (197)
T ss_dssp             ETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSEEEE
T ss_pred             ECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCceEE
Confidence            9999998899999998877666655443332 367899999999999999999999999999875543         355


Q ss_pred             EECC-CCceeeEEEEEEEEeCCeeEEEEEEEEEec
Q psy16863        896 ISGE-DGTCCLGIYTCEAHNCMGTTSSSAALLGFE  929 (1075)
Q Consensus       896 ~~~~-~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~  929 (1075)
                      .+.. ....|+|.|+|.|.|.+|..+.++.|.|.+
T Consensus       163 ~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~d  197 (197)
T 2j8h_A          163 VFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD  197 (197)
T ss_dssp             ECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEeC
Confidence            6666 778899999999999999999999998863

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.94  E-value=5.3e-25  Score=241.05  Aligned_cols=262  Identities=20%  Similarity=0.261  Sum_probs=205.6

Q ss_pred             CCCccccccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCcccc-CCCeEEEe-eCCeEEEEEcccCCC
Q psy16863        241 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF-GNRFRAIN-RDGRTELNIRRVRRD  318 (1075)
Q Consensus       241 ~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~-~~~~~~L~I~~~~~~  318 (1075)
                      .+|.|...+.+..+.+|+.++|.|.+.+          .+...+.|++++..+.. +.++.+.. .++...|.|.+++.+
T Consensus         3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g----------~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~   72 (305)
T 2nzi_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTG----------HPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDD   72 (305)
T ss_dssp             CCCEEEECCCCEEECTTCCEEEEEEEEC----------SSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGG
T ss_pred             CCCeeeecccceEEeCCCcEEEEEEEeC----------CCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChh
Confidence            4688888899999999999999887754          44567889887766554 45666554 456679999999999


Q ss_pred             CCEEEEEEEEeCCeeEEEEEEEEEecCCCCCCee-----eeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCC
Q psy16863        319 DGGRYSVTASNESGYSTAKFELSVESQVPDAPAF-----IRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN  393 (1075)
Q Consensus       319 d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~-----~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~  393 (1075)
                      |+|.|+|.|.|..|..+..+.|.|..    +|.+     +..+....+.+|+.+.|.|.+.|.|.+.|.|+|+|..+..+
T Consensus        73 d~G~Y~C~a~n~~g~~~~~~~l~V~~----~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~  148 (305)
T 2nzi_A           73 DATVYQVRATNQGGSVSGTASLEVEV----PAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN  148 (305)
T ss_dssp             GCSEEEEEEEETTEEEEEEEEEEECE----EEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSS
T ss_pred             hCeEEEEEEEcCCCCccceEEEEEec----CCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCC
Confidence            99999999999999988888888875    3333     22335678899999999999999999999999999999888


Q ss_pred             CcEEEEEcCCEEEEEEcc-cCCCCceeEEEEEEeCCCceeeEEEEEeecCCCCCCCeeeeec----ceE-E------ecC
Q psy16863        394 KIYRTQHDGNFYFIDLSS-VSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKEL----EAI-L------TEQ  461 (1075)
Q Consensus       394 ~~~~~~~~g~~~~L~I~~-v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~----~~~-~------~~g  461 (1075)
                      .++.+...+....|.|.+ +..+|+|.|+|.|.|..|....++.|.|..+|.  +|....-.    ..+ +      ..|
T Consensus       149 ~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~--~p~~~~~~~~~~~~v~l~w~~p~~~g  226 (305)
T 2nzi_A          149 GHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPD--PPRGVKVSDVSRDSVNLTWTEPASDG  226 (305)
T ss_dssp             SSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCC--CCEEEEEESCCSSCEEEEEECCSCCS
T ss_pred             CcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCC--CCCCceeeeccCCEEEEEEcCCccCC
Confidence            888887777778899999 999999999999999999998888888886653  23221100    000 1      224


Q ss_pred             CeEEEEEEEECCCCCeEEEEeCCEeccCCCEEEEEeCCCCCCCcEEEEEEEEecceeeEEE
Q psy16863        462 GTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFST  522 (1075)
Q Consensus       462 ~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  522 (1075)
                      +...+.|.+...|.+...|.+.+...    ...+.+.++...+.|.|+|.|.|..|....+
T Consensus       227 ~~~i~~y~v~~~~~~~~~w~~~~~~~----~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S  283 (305)
T 2nzi_A          227 GSKITNYIVEKCATTAERWLRVGQAR----ETRYTVINLFGKTSYQFRVIAENKFGLSKPS  283 (305)
T ss_dssp             BSCEEEEEEEEEETTSCCEEEEEEES----SSEEEECSCCSSCEEEEEEEEEETTEECCCC
T ss_pred             CCceeEEEEEEecCCCCccEECcccc----CceEEecCCCCCCeEEEEEEEEeCCcccCCc
Confidence            44566777776677777888766554    3367889999999999999999999977544

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.93  E-value=1.8e-24  Score=222.51  Aligned_cols=184  Identities=22%  Similarity=0.390  Sum_probs=155.3

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEee-cCCcEEEEEeeCcEEEEEEccccC-CCCeEEEEEE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVV-ESDNVKILKETLGVCHLKIHALEV-ADQAEWKCIA  824 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~-~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~A  824 (1075)
                      .||.|...+.+..+.+|+++.|.|.+.|.|.+.|+|+|+|..+. ...++.+.....+...|.|.+++. +|+|.|+|.|
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~   84 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVA   84 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEE
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEE
Confidence            68999999999999999999999999999999999999999997 567788776667778999999999 9999999999


Q ss_pred             EeCCce-EEEEEEEEEEecCCCC--CCeeeeecce-eecCCCeEEEEEEEEccCCCeeEEEECCEEcCCCCe------eE
Q psy16863        825 TNDFGQ-SITSCFLKLNVPKHYK--KPKFLEELKA-VLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDI------HK  894 (1075)
Q Consensus       825 ~N~~G~-~~~s~~l~V~~~~~~~--~p~~~~~~~~-~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~------~~  894 (1075)
                      .|..|. ...++.|.|..++...  .|.+...+.. .+.+|+.++|.|.+.|.|.|.|+|+|+|..+..+..      ..
T Consensus        85 ~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~  164 (212)
T 2yd1_A           85 ENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGF  164 (212)
T ss_dssp             ECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEETTE
T ss_pred             EeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEccCCe
Confidence            999998 6778888888754322  2566554433 467899999999999999999999999999875321      14


Q ss_pred             EEECCCCceeeEEEEEEEEeCCeeEEEE-EEEEEecC
Q psy16863        895 IISGEDGTCCLGIYTCEAHNCMGTTSSS-AALLGFED  930 (1075)
Q Consensus       895 i~~~~~~~~d~G~Y~C~a~N~~G~~~~~-~~l~v~~~  930 (1075)
                      |.+......|+|.|+|.|.|.+|...+. +.|.|...
T Consensus       165 L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~  201 (212)
T 2yd1_A          165 LQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVR  201 (212)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred             EEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEec
Confidence            6667777889999999999999999875 78888654

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.93  E-value=3e-24  Score=220.69  Aligned_cols=182  Identities=23%  Similarity=0.343  Sum_probs=147.4

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccc-cCCCCeEEEEEEE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHAL-EVADQAEWKCIAT  825 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~A~  825 (1075)
                      .||.|...+.+..+.+|+.+.|.|.+.|.|.+.|+|+|+|..+..+....+.........|.|.++ +.+|+|.|+|.|.
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~   84 (212)
T 2yd6_A            5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVAS   84 (212)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEE
T ss_pred             CCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEE
Confidence            588999999999999999999999999999999999999999976654444444345678999999 4999999999999


Q ss_pred             eCCceEEEEEEEEEEecCCC--CCCeeeeecce-eecCCCeEEEEEEEEccCCCeeEEEECCEEcCCCC-----------
Q psy16863        826 NDFGQSITSCFLKLNVPKHY--KKPKFLEELKA-VLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGD-----------  891 (1075)
Q Consensus       826 N~~G~~~~s~~l~V~~~~~~--~~p~~~~~~~~-~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~-----------  891 (1075)
                      |..|....++.|.|..++..  ..|.+...+.. .+.+|+.++|.|.+.|.|.|.|+|+|||.++..+.           
T Consensus        85 n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~  164 (212)
T 2yd6_A           85 NNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSE  164 (212)
T ss_dssp             ETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEET
T ss_pred             cCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecC
Confidence            99999888899999875432  23555544433 46789999999999999999999999999987541           


Q ss_pred             -eeEEEECCCCceeeEEEEEEEEeCCeeEEEE-EEEEEe
Q psy16863        892 -IHKIISGEDGTCCLGIYTCEAHNCMGTTSSS-AALLGF  928 (1075)
Q Consensus       892 -~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~-~~l~v~  928 (1075)
                       ...|.+......|+|.|+|.|.|.+|...++ +.|.+.
T Consensus       165 ~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~  203 (212)
T 2yd6_A          165 SIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR  203 (212)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEE
Confidence             2566777778889999999999999998754 555554

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.92  E-value=6.2e-24  Score=215.72  Aligned_cols=181  Identities=22%  Similarity=0.378  Sum_probs=152.1

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .+|.|...+.+..+.+|+++.|.|.+.+.|.+.+.|+|+|..+..+.++.+... .....|.|.+++.+|+|.|+|.|.|
T Consensus         6 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~n   84 (197)
T 3lcy_A            6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSD-GRTHTLTVMTEEQEDEGVYTCIATN   84 (197)
T ss_dssp             EEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEES-SSEEEEEEECCSGGGCEEEEEEEEC
T ss_pred             CCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeC-CCEEEEEEecCCccCCEEEEEEEEC
Confidence            588898888999999999999999999999999999999999988888877654 4567899999999999999999999


Q ss_pred             CCceEEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCCeeEEEECCEEcCCCCe---------eEEEE
Q psy16863        827 DFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDI---------HKIIS  897 (1075)
Q Consensus       827 ~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~---------~~i~~  897 (1075)
                      ..|....+..|.|..++.+... ........+.+|+.+.|.|.+.|.|.|.++|+|||..+..+.+         ..|.+
T Consensus        85 ~~~~~~~~~~l~v~~~p~~~~~-~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i  163 (197)
T 3lcy_A           85 EVGEVETSSKLLLQATPQFHPG-YPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVM  163 (197)
T ss_dssp             SSCEEEEEEEEEEEEEEEECTT-SCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEEEE
T ss_pred             CCCceeEEEEEEEEcCCCCCCC-ccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEE
Confidence            9999988999998876543221 1111122366899999999999999999999999999986654         34556


Q ss_pred             CCCCc-eeeEEEEEEEEeCCeeEEEEEEEEEec
Q psy16863        898 GEDGT-CCLGIYTCEAHNCMGTTSSSAALLGFE  929 (1075)
Q Consensus       898 ~~~~~-~d~G~Y~C~a~N~~G~~~~~~~l~v~~  929 (1075)
                      ..... .|+|.|+|.|.|.+|..+.++.|.|.+
T Consensus       164 ~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          164 KNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD  196 (197)
T ss_dssp             SSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             ccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence            66654 799999999999999999999998865

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.92  E-value=4.7e-24  Score=215.98  Aligned_cols=178  Identities=30%  Similarity=0.500  Sum_probs=148.1

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCC--cEEEEEeeCcEEEEEEccccCCCCeEEEEEE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESD--NVKILKETLGVCHLKIHALEVADQAEWKCIA  824 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A  824 (1075)
                      .+|.|...+.+..+.+|+++.|.|.+.|.|.+.++|+|+|..+....  ++.+.. ..+...|.|.+++.+|+|.|+|.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~   82 (194)
T 2a38_A            4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISF-SDGRAKLTIPAVTKANSGRYSLKA   82 (194)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEE-ETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEe-CCCEEEEEECCCCcccCEEEEEEE
Confidence            57889988889999999999999999999999999999999987654  555543 345789999999999999999999


Q ss_pred             EeCCceEEEEEEEEEEecCCCCCCeeeeecce-eecCCCeEEEEEEEEccCCCeeEEEECCEEcCCCCee---------E
Q psy16863        825 TNDFGQSITSCFLKLNVPKHYKKPKFLEELKA-VLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIH---------K  894 (1075)
Q Consensus       825 ~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~-~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~~---------~  894 (1075)
                      .|..|....++.|.|..+.  .+|.+...+.. .+.+|+.++|.|.+.|.|.|.++|+|||.++..+.++         .
T Consensus        83 ~n~~~~~~~~~~l~v~~~~--~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  160 (194)
T 2a38_A           83 TNGSGQATSTAELLVKAET--APPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYS  160 (194)
T ss_dssp             EETTEEEEEEEEEEEECCC--EEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTEEE
T ss_pred             EcCCceEeEEEEEEEccCC--CCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCEEE
Confidence            9999998888888887421  23445444433 4779999999999999999999999999999866543         3


Q ss_pred             EEECCCCceeeEEEEEEEEeCCeeEEEEEEEEE
Q psy16863        895 IISGEDGTCCLGIYTCEAHNCMGTTSSSAALLG  927 (1075)
Q Consensus       895 i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v  927 (1075)
                      |.+......|+|.|+|.|.|..|..++++.|.|
T Consensus       161 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          161 LLIAEAYPEDSGTYSVNATNSVGRATSTAELLV  193 (194)
T ss_dssp             EEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence            445555667899999999999999999888876

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.92  E-value=3e-24  Score=238.86  Aligned_cols=277  Identities=14%  Similarity=0.155  Sum_probs=175.2

Q ss_pred             ecCceeeccCCeEEEEEEEecC--CCcEEEEEEC--CEec-----------------CCCCcEEEEEc--CCEEEEEEcc
Q psy16863        355 RLHDIAVKVGTRARLLVEIRSP--TEIKIHWYRN--DRKL-----------------EENKIYRTQHD--GNFYFIDLSS  411 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~~g~--p~~~v~W~k~--g~~l-----------------~~~~~~~~~~~--g~~~~L~I~~  411 (1075)
                      .+..+.+.+|++++|.|.+.+.  +.+.|.|||+  |..+                 ....|+.+..+  +....|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (344)
T 1za6_B            6 QSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSS   85 (344)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECC
Confidence            3456789999999999999886  3679999997  4322                 11356666554  4567899999


Q ss_pred             cCCCCceeEEEEEEeCCCceeeEEEEEeecCCCCCCCeeee-ecceEEecCCeEEEEEEEECC-CC-CeEEEEeCCEecc
Q psy16863        412 VSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTK-ELEAILTEQGTVSLECKVMGI-PT-PQLIWYKDNKKIK  488 (1075)
Q Consensus       412 v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~-~~~~~~~~g~~v~l~C~~~g~-p~-~~v~W~~~g~~l~  488 (1075)
                      ++.+|+|.|+|.|.|..+.....+.|.|...+. .+|.+.. .+...+.+|+.++|.|.+.|. |. +.|+|+|+|..+.
T Consensus        86 v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~-~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~  164 (344)
T 1za6_B           86 LRSEDTAVYFCTRSLNMAYWGQGTLVTVSSAST-KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSG  164 (344)
T ss_dssp             CCGGGCEEEEEEETTTTCEECCCEEEEECSSCC-BCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTT
T ss_pred             CCcccCEEEEEEEecCcceecCcEEEEEecCCC-CCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCc
Confidence            999999999999999665555567788874322 2343332 222335689999999999986 65 6999999997641


Q ss_pred             ---------CCCEE----EEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEecccc----ccCCCCCCcCCCCCCCCCC
Q psy16863        489 ---------AGDIF----ALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQS----FLDNDDVPFNSLMPPGPAP  551 (1075)
Q Consensus       489 ---------~~~~~----~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~----~~~~~~~~~~~~~~~~~~~  551 (1075)
                               .+..+    .|.|..+..+| |.|+|.|.|..|.......+.+.....    .................+|
T Consensus       165 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P  243 (344)
T 1za6_B          165 VHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREP  243 (344)
T ss_dssp             EEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------CCBCC
T ss_pred             eeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCcCC
Confidence                     22222    57787777777 999999999988654444332110000    0000000000000011233


Q ss_pred             eeeeeccceEeecCCeEEEEEEEecC-CCCceEEEEeCCeEEecCCcEEEEEcCCce----EEEEEeeeeecCCceEEEE
Q psy16863        552 IFIKEVENVKAKIGTSAILECQVLVP-PWPRSIYWYNKEGVVEASDKYHIMADGLGG----YSIEINYLEAVDDGEWKCV  626 (1075)
Q Consensus       552 ~~~~~~~~~~v~~G~~~~L~C~~~~~-p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~  626 (1075)
                      .+...........|..++|.|.+.|. |....+.|+++|..+.......+..++.+.    ..|.|.....+|+|.|+|.
T Consensus       244 ~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~  323 (344)
T 1za6_B          244 QVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCS  323 (344)
T ss_dssp             EEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEEEEE
T ss_pred             EEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccCCCeEEEE
Confidence            33322222223356679999999985 433489999999877543222222222222    2466666667789999999


Q ss_pred             EECCCCc
Q psy16863        627 ATSSSGV  633 (1075)
Q Consensus       627 a~n~~g~  633 (1075)
                      |.|....
T Consensus       324 a~~~~l~  330 (344)
T 1za6_B          324 VMHEALH  330 (344)
T ss_dssp             EECTTST
T ss_pred             EEcCCCC
Confidence            9998754

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.91  E-value=2.2e-24  Score=237.71  Aligned_cols=236  Identities=13%  Similarity=0.190  Sum_probs=152.9

Q ss_pred             CeEEEEEEEecC-C-CCeEEEEECCEEcCCCC----------eEEEe------e--cCCCceEEEEEEecCceEEEEEEE
Q psy16863        666 GLVSFECKVVGF-P-TPTLQWFKDNEELKPGD----------VYQLT------G--TSSLGSYCCVAKNVMGKAESSTQL  725 (1075)
Q Consensus       666 ~~~~l~C~v~g~-p-~p~v~W~k~g~~l~~~~----------~~~~~------~--~~d~G~Y~C~a~N~~g~~~~~~~l  725 (1075)
                      +.+.|.|.+.|. | .+.|+|+|+|..+..+.          .+.+.      .  .+|.|.|+|.|.|..+....++.+
T Consensus        25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~  104 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKK  104 (323)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEECC
T ss_pred             CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceeeec
Confidence            599999999986 4 47899999999886432          22211      1  138899999999988765443321


Q ss_pred             EEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecC-CCC---eEEEEECC-EEeecCCcEEEEEe
Q psy16863        726 TIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSIS-PEP---KVSWFRDD-QQVVESDNVKILKE  800 (1075)
Q Consensus       726 ~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~-p~p---~v~W~k~g-~~i~~~~~~~~~~~  800 (1075)
                      .+...              ...++.++..+....+.+|+++.|.|.+.|. |.|   .|+|+|++ ..+........ ..
T Consensus       105 ~~~~~--------------~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~-~~  169 (323)
T 2wqr_A          105 CADSN--------------PRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEE-KQ  169 (323)
T ss_dssp             CCCSS--------------GGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEE-EC
T ss_pred             CCCCC--------------CCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCc-cC
Confidence            11100              0023344555555568899999999999985 556   99999975 54433222111 01


Q ss_pred             eC----cEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEec-CCCCCCeeee-ecceeecCCCeEEEEEEEEccC
Q psy16863        801 TL----GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP-KHYKKPKFLE-ELKAVLSEGGAVNLECKVIGVP  874 (1075)
Q Consensus       801 ~~----~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~-~~~~~p~~~~-~~~~~~~~g~~~~L~C~v~g~p  874 (1075)
                      ..    ....|.|.+++.+|+|.|+|.|.|..+....  .+.|... ....+|.+.. ........|+.++|.|.+.|.+
T Consensus       170 ~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~--~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~  247 (323)
T 2wqr_A          170 RNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRAL--MRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFM  247 (323)
T ss_dssp             TTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCE--EEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEB
T ss_pred             CCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCe--eeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeee
Confidence            11    1347999999999999999999998754322  3344221 1123444322 1111122499999999999854


Q ss_pred             C-C-eeEEEECCEEcCCCCe----------------eEEEECCCCceeeEEEEEEEEeCCee
Q psy16863        875 Q-P-TLKWFKDGRELKAGDI----------------HKIISGEDGTCCLGIYTCEAHNCMGT  918 (1075)
Q Consensus       875 ~-p-~v~W~k~g~~l~~~~~----------------~~i~~~~~~~~d~G~Y~C~a~N~~G~  918 (1075)
                      + + .|+|+|||.+|..+..                ..|.+......|+|.|+|.|.|..+.
T Consensus       248 p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          248 PEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             SSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             CCCcEEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            3 3 7999999999865421                12333333446789999999999876

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.91  E-value=1.9e-23  Score=212.34  Aligned_cols=176  Identities=19%  Similarity=0.314  Sum_probs=140.7

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEe-cCCCcEEEEEECCEecCCCCcEEEEEcC--CEEEEEEcccCCCCceeEEEEEE
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDG--NFYFIDLSSVSLFDSGRWTCLAE  425 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~-g~p~~~v~W~k~g~~l~~~~~~~~~~~g--~~~~L~I~~v~~~d~G~Y~C~a~  425 (1075)
                      +|.|...+ +..+.+|+.+.|.|.+. +.|.+.|+|+|||++|..+.++.+..++  ..+.|.|.+++.+|+|.|+|.|.
T Consensus         3 ~p~~~~~~-~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~   81 (207)
T 3rbs_A            3 DPFTKSEL-AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQ   81 (207)
T ss_dssp             ---CCEEE-EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEE
T ss_pred             CCeeecCC-ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEE
Confidence            56676655 67899999999999995 4789999999999999988887777655  67789999999999999999999


Q ss_pred             eCCCceeeEEEEEeecCC----------------CCCCCeeeeecceEEecCCeEEEEEEEECC-CCCeEEEEeCCEecc
Q psy16863        426 NAVGRSHCSCELSVLVPK----------------AYKAPFFTKELEAILTEQGTVSLECKVMGI-PTPQLIWYKDNKKIK  488 (1075)
Q Consensus       426 n~~g~~~~s~~l~V~~~~----------------~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~-p~~~v~W~~~g~~l~  488 (1075)
                      |  |.......+.+....                ...+|.|...+...+.+|+.+.|.|.+.|. |.|.|+|+|||++|.
T Consensus        82 N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~  159 (207)
T 3rbs_A           82 D--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREIS  159 (207)
T ss_dssp             E--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEEC
T ss_pred             C--CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecCCcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECC
Confidence            9  555544443321100                012567766665568899999999999998 999999999999995


Q ss_pred             CC-------CEEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEE
Q psy16863        489 AG-------DIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIA  527 (1075)
Q Consensus       489 ~~-------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v  527 (1075)
                      .+       ....|.|..+..+|+|.|+|.|.|..|.+.+++.|.+
T Consensus       160 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~  205 (207)
T 3rbs_A          160 VDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  205 (207)
T ss_dssp             CCCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             CCCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence            43       2347999999999999999999999999998887754

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.91  E-value=6.7e-24  Score=233.88  Aligned_cols=267  Identities=15%  Similarity=0.136  Sum_probs=169.5

Q ss_pred             CCCeeeeecCceeeccC--CeEEEEEEEecC-C-CcEEEEEECCEecCCCCcE--EEEEcCCE---EEEEEcccCCCCce
Q psy16863        348 DAPAFIRRLHDIAVKVG--TRARLLVEIRSP-T-EIKIHWYRNDRKLEENKIY--RTQHDGNF---YFIDLSSVSLFDSG  418 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G--~~v~l~C~~~g~-p-~~~v~W~k~g~~l~~~~~~--~~~~~g~~---~~L~I~~v~~~d~G  418 (1075)
                      .+|.+...+.......|  +.+.|.|.+.|. | .+.|+|+|||..+..+...  ....+|..   ..|.|.+...+|+|
T Consensus         6 ~~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g   85 (323)
T 2wqr_A            6 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDR   85 (323)
T ss_dssp             CCCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTC
T ss_pred             CCCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCC
Confidence            35555433333333344  699999999875 4 5799999999998755322  12223432   35788888888999


Q ss_pred             eEEEEEEeCCCceeeEEEEEeecCCCCCCC-eeeeecce-EEecCCeEEEEEEEECC-CCC---eEEEEeCC-EeccCC-
Q psy16863        419 RWTCLAENAVGRSHCSCELSVLVPKAYKAP-FFTKELEA-ILTEQGTVSLECKVMGI-PTP---QLIWYKDN-KKIKAG-  490 (1075)
Q Consensus       419 ~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~p-~~~~~~~~-~~~~g~~v~l~C~~~g~-p~~---~v~W~~~g-~~l~~~-  490 (1075)
                      .|+|.|.|..+....++.+.+..  ....| .+...+.. .+.+|+.+.|.|.+.|. |.+   .|+|+|++ ..+... 
T Consensus        86 ~Y~C~a~n~~~~~~~~~~~~~~~--~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~  163 (323)
T 2wqr_A           86 TYTCQVTYQGHTFEDSTKKCADS--NPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHST  163 (323)
T ss_dssp             CEEEEEEETTEEEEEEECCCCCS--SGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCC
T ss_pred             cEEEEEEeCCCCcceeeecCCCC--CCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCccccccc
Confidence            99999999877654333221111  11122 22332222 26789999999999985 556   89999975 444321 


Q ss_pred             --------C----EEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeecc
Q psy16863        491 --------D----IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVE  558 (1075)
Q Consensus       491 --------~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (1075)
                              .    ...|.|..+..+|+|.|+|.|.|..+....  .+.|...             ... ..+|.+...+.
T Consensus       164 ~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~--~~~v~~~-------------~~~-~~~P~v~~~~~  227 (323)
T 2wqr_A          164 RKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRAL--MRSTTKT-------------SGP-RAAPEVYAFAT  227 (323)
T ss_dssp             CEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCE--EEEECCC-------------CSC-CBCCEEEEEEC
T ss_pred             CCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCe--eeEEEcc-------------CCC-CCCCEEEEeCC
Confidence                    1    126889888999999999999998753322  3333210             001 12333332222


Q ss_pred             ceEeecCCeEEEEEEEec-CCCCceEEEEeCCeEEecCCcEEE-----EEcCC--ceEEEEEeeeeecCCceEEEEEECC
Q psy16863        559 NVKAKIGTSAILECQVLV-PPWPRSIYWYNKEGVVEASDKYHI-----MADGL--GGYSIEINYLEAVDDGEWKCVATSS  630 (1075)
Q Consensus       559 ~~~v~~G~~~~L~C~~~~-~p~p~~v~W~~~~~~i~~~~~~~~-----~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~  630 (1075)
                      ......|+.++|.|.+.+ .|.+..|.|++++..+.... +..     ..++.  ....|.|..+..+|+|.|+|.|.|.
T Consensus       228 ~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~-~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~  306 (323)
T 2wqr_A          228 PEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDAR-HSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHE  306 (323)
T ss_dssp             CCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGG-EEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECT
T ss_pred             ChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCc-eeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeC
Confidence            222223999999999998 44444899999999876432 211     11111  1236899999999999999999999


Q ss_pred             CCc
Q psy16863        631 SGV  633 (1075)
Q Consensus       631 ~g~  633 (1075)
                      .+.
T Consensus       307 ~~~  309 (323)
T 2wqr_A          307 AAS  309 (323)
T ss_dssp             TST
T ss_pred             CCC
Confidence            875

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.90  E-value=1.2e-22  Score=206.28  Aligned_cols=182  Identities=22%  Similarity=0.326  Sum_probs=154.1

Q ss_pred             CCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCC-CcEEEE-EcCCEEEEEEcccCCCCceeEEEEE
Q psy16863        347 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN-KIYRTQ-HDGNFYFIDLSSVSLFDSGRWTCLA  424 (1075)
Q Consensus       347 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~-~~g~~~~L~I~~v~~~d~G~Y~C~a  424 (1075)
                      +.+|.|...+.+..+.+|+++.|.|.+.+.|.+.+.|+|+|..+... .++.+. ..+..+.|.|.+++.+|+|.|+|.|
T Consensus         2 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (197)
T 2j8h_A            2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRA   81 (197)
T ss_dssp             -CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEE
T ss_pred             CCCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEE
Confidence            35899999899999999999999999999999999999999998754 455554 3566678999999999999999999


Q ss_pred             EeCCCceeeEEEEEeecCCCCCCCeeeeecc-eEEecCCeEEEEEEEECCCCCeEEEEeCCEeccCCC---------EEE
Q psy16863        425 ENAVGRSHCSCELSVLVPKAYKAPFFTKELE-AILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD---------IFA  494 (1075)
Q Consensus       425 ~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~-~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~---------~~~  494 (1075)
                      .|..|....++.|.|..++....|.+...+. ..+.+|+.+.|.|.+.|.|.+.+.|+|++..+..+.         ...
T Consensus        82 ~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~  161 (197)
T 2j8h_A           82 TNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTS  161 (197)
T ss_dssp             EETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSEEE
T ss_pred             EECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCceE
Confidence            9999998888999998877655444333222 347889999999999999999999999999886543         357


Q ss_pred             EEeCC-CCCCCcEEEEEEEEecceeeEEEEEEEEe
Q psy16863        495 LTANP-KDPSSLGTYTCEAVNCMGAAFSTSRVIAR  528 (1075)
Q Consensus       495 l~i~~-~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~  528 (1075)
                      |.|.. +..+|+|.|+|.|.|..|....++.|.|.
T Consensus       162 L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          162 LVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             EECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence            88888 99999999999999999999888888875

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.90  E-value=1.3e-22  Score=205.55  Aligned_cols=173  Identities=23%  Similarity=0.412  Sum_probs=140.8

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEe-cCCCCeEEEEECCEEeecCC--cEEEEEeeCc------EEEEEEccccCCCCe
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVS-ISPEPKVSWFRDDQQVVESD--NVKILKETLG------VCHLKIHALEVADQA  818 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~-g~p~p~v~W~k~g~~i~~~~--~~~~~~~~~~------~~~L~I~~~~~~D~G  818 (1075)
                      +|.|+..+.+..+.+|+++.|.|.+. |.|.+.++|+|+|..+....  ++.+.....+      ...|.|.+++.+|+|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            78899999999999999999999999 99999999999999997663  3444322211      468999999999999


Q ss_pred             EEEEEEEeCCceEEEE-EEEEEEecCCCCCCeeeeecc-eeecCCCeEEEEEEEEccCCC-eeEEEECCEEcCCC----C
Q psy16863        819 EWKCIATNDFGQSITS-CFLKLNVPKHYKKPKFLEELK-AVLSEGGAVNLECKVIGVPQP-TLKWFKDGRELKAG----D  891 (1075)
Q Consensus       819 ~Y~C~A~N~~G~~~~s-~~l~V~~~~~~~~p~~~~~~~-~~~~~g~~~~L~C~v~g~p~p-~v~W~k~g~~l~~~----~  891 (1075)
                      .|+|.|.|..|..... +.|.|..+     |.+...+. ..+.+|+.++|.|.+.|.|.| .|+|+|+|..+...    .
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~l~V~~~-----p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~  156 (195)
T 2c5d_C           82 QYQCLVFLGHQTFVSQPGYVGLEGL-----PYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGP  156 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECCS-----CEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTSSC
T ss_pred             EEEEEEEeCCCceecccEEEEEecC-----CeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCcCC
Confidence            9999999998876543 77777654     44443333 347789999999999999999 99999999998754    3


Q ss_pred             eeEEEECCCCceeeEEEEEEEEeCCeeEE-EEEEEEE
Q psy16863        892 IHKIISGEDGTCCLGIYTCEAHNCMGTTS-SSAALLG  927 (1075)
Q Consensus       892 ~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~-~~~~l~v  927 (1075)
                      ...|.+....  |+|.|+|.|.|.+|... .++.|.|
T Consensus       157 ~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          157 QRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             CEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            4566666554  79999999999999996 6888877

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.90  E-value=1.2e-23  Score=212.27  Aligned_cols=159  Identities=17%  Similarity=0.237  Sum_probs=118.4

Q ss_pred             eeeeecCCeEEEEEE---EecCCCCeEEEEECCEEeec-----------------CCcEEEEEeeCcEEEEEEccccCCC
Q psy16863        757 SCQATVNEEFKFTVQ---VSISPEPKVSWFRDDQQVVE-----------------SDNVKILKETLGVCHLKIHALEVAD  816 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~---v~g~p~p~v~W~k~g~~i~~-----------------~~~~~~~~~~~~~~~L~I~~~~~~D  816 (1075)
                      ++++..|+.+.|.|.   +.+.|.|.|+|||+|..+..                 ..++.+. ...+.+.|.|.+++.+|
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D   80 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH-RSANTFFLVVTAANISH   80 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEE-EETTEEEEEESSCCGGG
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEE-EcCCEEEEEEccCCHHH
Confidence            467899999999995   67889999999998743211                 1233333 34457899999999999


Q ss_pred             CeEEEEEEEeCCceEEEEEEEEEEecCCCCCCeeeeecce-eecCCCeEEEEEEEEccCCCeeEEEECCEEcCC------
Q psy16863        817 QAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKA-VLSEGGAVNLECKVIGVPQPTLKWFKDGRELKA------  889 (1075)
Q Consensus       817 ~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~-~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~------  889 (1075)
                      +|.|+|.|.|..|....++.|.|..|+     .+...+.. .+.+|+.++|.|.+.|.|.|.|+|+|++..+..      
T Consensus        81 ~G~Y~C~a~n~~g~~~~~~~l~V~~p~-----~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~  155 (203)
T 4fa8_A           81 DGNYLCRMKLGETEVTKQEHLSVVKPL-----TLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANG  155 (203)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEEEEE-----EEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------
T ss_pred             CeEEEEEEEcCCCcEEEEEEEEecCCc-----eeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccc
Confidence            999999999999999999999998654     33333332 377899999999999999999999987643321      


Q ss_pred             -------CCeeEEEECCCCceeeEEEEEEEEeCCeeEEE
Q psy16863        890 -------GDIHKIISGEDGTCCLGIYTCEAHNCMGTTSS  921 (1075)
Q Consensus       890 -------~~~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~  921 (1075)
                             |....+.+......|+|.|+|.|+|.+|++..
T Consensus       156 r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          156 GVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             eEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence                   11122223344557899999999999999875

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.90  E-value=7.6e-23  Score=227.55  Aligned_cols=266  Identities=12%  Similarity=0.133  Sum_probs=174.7

Q ss_pred             cceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCC--Ccee-----------------ccCcEEEEec--CCe
Q psy16863        142 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG--DHPI-----------------FGNRFRAINR--DGR  200 (1075)
Q Consensus       142 ~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~--~~~~-----------------~~~~~~~~~~--~~~  200 (1075)
                      +..+.+.+|++++|.|.+.+..        .+.+.+.|++++  ..+.                 ..+|+.+...  .+.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~--------~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   78 (344)
T 1za6_B            7 SGAEVVKPGASVKISCKASGYT--------FTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSAST   78 (344)
T ss_dssp             CCCEEECTTCCEEEEEEEESSC--------TTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTE
T ss_pred             CCCeEEeCCCcEEEEEEcCCcc--------ccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCE
Confidence            3456788999999999887531        124567888763  2221                 2457766543  456


Q ss_pred             EEEEEceeccCCCeEEEEEEEcCceeEEEEEEEeeeccCCCCCccccccccceeeccceeEEEEEecCCCceEEEEecCC
Q psy16863        201 TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNN  280 (1075)
Q Consensus       201 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~  280 (1075)
                      ..|+|.+++.+|+|.|+|.|.|..+.....+.|.|....+.+|.+........+.+|+.++|.|.+.+.         .+
T Consensus        79 ~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~---------~P  149 (344)
T 1za6_B           79 AYVELSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDY---------FP  149 (344)
T ss_dssp             EEEEECSCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEE---------BS
T ss_pred             EEEEECCCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeE---------EC
Confidence            799999999999999999999976665566778887444445554444444557799999998877532         12


Q ss_pred             -CeeeEEecCCCcccc---------CCCeEEEeeCCeEEEEEcccCCCCCEEEEEEEEeCCeeEEEEEEEEEe-------
Q psy16863        281 -TIPFSFRAQGDHPIF---------GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE-------  343 (1075)
Q Consensus       281 -~~~~~w~~~~~~~~~---------~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~-------  343 (1075)
                       ++.+.|++++.....         +.++..     ...|+|.++..+| |.|+|.|.|..+.......+.+.       
T Consensus       150 ~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~-----~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~  223 (344)
T 1za6_B          150 EPVTVSWNSGALTSGVHTFPAVLQSSGLYSL-----SSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHT  223 (344)
T ss_dssp             SCCCEEETTTTBCTTEEECCCEECTTSCEEE-----EEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC-----
T ss_pred             CCeEEEEecCCccCceeECCCeECCCCCEEE-----EEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccc
Confidence             257788776643210         112221     1379999998888 99999999988764333333211       


Q ss_pred             -------------cCCCCCCeeeeecCceeeccCCeEEEEEEEecC-C-CcEEEEEECCEecCCCCcEE--EEEcCCE--
Q psy16863        344 -------------SQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSP-T-EIKIHWYRNDRKLEENKIYR--TQHDGNF--  404 (1075)
Q Consensus       344 -------------~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p-~~~v~W~k~g~~l~~~~~~~--~~~~g~~--  404 (1075)
                                   .....+|.+..........+|..++|.|.+.|. | .+.|+|+|||..+.......  ...+|..  
T Consensus       224 ~~~~~~~~~l~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~  303 (344)
T 1za6_B          224 CPPCGGGSSGGGSGGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFL  303 (344)
T ss_dssp             ---------------CCBCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEE
T ss_pred             cCCCCCCccccccCCCCcCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEE
Confidence                         112346666544333333456679999999884 4 47999999999886432222  2334443  


Q ss_pred             -EEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863        405 -YFIDLSSVSLFDSGRWTCLAENAVGR  430 (1075)
Q Consensus       405 -~~L~I~~v~~~d~G~Y~C~a~n~~g~  430 (1075)
                       ..|.|.....+|.|.|+|.|.|....
T Consensus       304 ~s~l~i~~~~~~~~g~YtC~a~~~~l~  330 (344)
T 1za6_B          304 YSKLTVDKSRWQQGNVFSCSVMHEALH  330 (344)
T ss_dssp             EEEEEECHHHHHTTCEEEEEEECTTST
T ss_pred             EEEEEEChHHccCCCeEEEEEEcCCCC
Confidence             34666666667899999999998654

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.90  E-value=1.9e-22  Score=204.68  Aligned_cols=181  Identities=22%  Similarity=0.399  Sum_probs=155.6

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      .+|.|...+.+..+.+|+++.|.|.+.+.|.+.+.|+|+|..+..+.++.+..++....|.|.+++.+|+|.|+|.|.|.
T Consensus         6 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~   85 (197)
T 3lcy_A            6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNE   85 (197)
T ss_dssp             EEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECS
T ss_pred             CCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECC
Confidence            47888888889999999999999999999999999999999999888998988898889999999999999999999999


Q ss_pred             CCceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccCCCE---------EEEEeC
Q psy16863        428 VGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDI---------FALTAN  498 (1075)
Q Consensus       428 ~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~~---------~~l~i~  498 (1075)
                      .|....+..|.|..+|..... ........+.+|+.+.|.|.+.|.|.+.+.|++++..+..+.+         ..|.|.
T Consensus        86 ~~~~~~~~~l~v~~~p~~~~~-~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~  164 (197)
T 3lcy_A           86 VGEVETSSKLLLQATPQFHPG-YPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMK  164 (197)
T ss_dssp             SCEEEEEEEEEEEEEEEECTT-SCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEEEES
T ss_pred             CCceeEEEEEEEEcCCCCCCC-ccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEEc
Confidence            999888888888876543221 1111223467899999999999999999999999999876543         468888


Q ss_pred             CCCC-CCcEEEEEEEEecceeeEEEEEEEEec
Q psy16863        499 PKDP-SSLGTYTCEAVNCMGAAFSTSRVIARG  529 (1075)
Q Consensus       499 ~~~~-~d~G~Y~C~a~n~~g~~~~~~~v~v~~  529 (1075)
                      .+.. +|+|.|+|.|.|..|....++.|.|.+
T Consensus       165 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          165 NVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD  196 (197)
T ss_dssp             SCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             cccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence            8884 899999999999999999998888863

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.90  E-value=3.3e-22  Score=202.38  Aligned_cols=189  Identities=28%  Similarity=0.454  Sum_probs=161.9

Q ss_pred             CCCccccccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCccccC--CCeEEEeeCCeEEEEEcccCCC
Q psy16863        241 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFG--NRFRAINRDGRTELNIRRVRRD  318 (1075)
Q Consensus       241 ~~p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~L~I~~~~~~  318 (1075)
                      .+|.|...+.+..+.+|+.++|.|.+.+          .+...+.|++++......  .++++...++...|.|.+++.+
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~----------~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   73 (194)
T 2a38_A            4 QAPTFTQPLQSVVVLEGSTATFEAHISG----------FPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKA   73 (194)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEE----------ESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGG
T ss_pred             CCCeEEccCCceEEECCCEEEEEEEEEe----------cCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcc
Confidence            4677888888999999999999887653          345578898877655443  3677777788889999999999


Q ss_pred             CCEEEEEEEEeCCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEE
Q psy16863        319 DGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRT  398 (1075)
Q Consensus       319 d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~  398 (1075)
                      |+|.|+|.|.|..|.....+.|.|.. ...+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+|+|..+..+.++.+
T Consensus        74 d~G~Y~C~~~n~~~~~~~~~~l~v~~-~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~  152 (194)
T 2a38_A           74 NSGRYSLKATNGSGQATSTAELLVKA-ETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQI  152 (194)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEEEEC-CCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEE
T ss_pred             cCEEEEEEEEcCCceEeEEEEEEEcc-CCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEE
Confidence            99999999999999888888888874 23467777777888999999999999999999999999999999998888888


Q ss_pred             EEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEee
Q psy16863        399 QHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL  440 (1075)
Q Consensus       399 ~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~  440 (1075)
                      ..++..+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       153 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  194 (194)
T 2a38_A          153 SQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ  194 (194)
T ss_dssp             EEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence            888888899999999999999999999999998888777763

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.90  E-value=7e-22  Score=202.98  Aligned_cols=183  Identities=25%  Similarity=0.474  Sum_probs=153.2

Q ss_pred             CCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecC-CCCcEEEEE-cCCEEEEEEcccCC-CCceeEEEE
Q psy16863        347 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLE-ENKIYRTQH-DGNFYFIDLSSVSL-FDSGRWTCL  423 (1075)
Q Consensus       347 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~-~~~~~~~~~-~g~~~~L~I~~v~~-~d~G~Y~C~  423 (1075)
                      ..||.|...+.+..+.+|+++.|.|.+.|.|.+.|+|+|+|..+. ...++.+.. .+....|.|.+++. +|+|.|+|.
T Consensus         4 ~~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~   83 (212)
T 2yd1_A            4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECV   83 (212)
T ss_dssp             -CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEE
T ss_pred             CCCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEE
Confidence            468999999999999999999999999999999999999999997 455666543 45567899999999 999999999


Q ss_pred             EEeCCCc-eeeEEEEEeecCCCCC--CCeeeeecce-EEecCCeEEEEEEEECCCCCeEEEEeCCEeccCCC-EE-----
Q psy16863        424 AENAVGR-SHCSCELSVLVPKAYK--APFFTKELEA-ILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD-IF-----  493 (1075)
Q Consensus       424 a~n~~g~-~~~s~~l~V~~~~~~~--~p~~~~~~~~-~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~-~~-----  493 (1075)
                      |.|..|. ...++.|.|..++...  .|.+...+.. .+.+|+.+.|.|.+.|.|.+.|+|++++..+.... ++     
T Consensus        84 ~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~  163 (212)
T 2yd1_A           84 AENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG  163 (212)
T ss_dssp             EECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEETT
T ss_pred             EEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEccCC
Confidence            9999998 6778888888764322  2555555443 47789999999999999999999999999987532 21     


Q ss_pred             EEEeCCCCCCCcEEEEEEEEecceeeEEE-EEEEEec
Q psy16863        494 ALTANPKDPSSLGTYTCEAVNCMGAAFST-SRVIARG  529 (1075)
Q Consensus       494 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~v~v~~  529 (1075)
                      .|.|..+..+|+|.|+|.|.|..|...+. +.|.|..
T Consensus       164 ~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~  200 (212)
T 2yd1_A          164 FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV  200 (212)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             eEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEe
Confidence            68999999999999999999999998775 7888874

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.89  E-value=3.8e-23  Score=215.91  Aligned_cols=186  Identities=19%  Similarity=0.361  Sum_probs=146.8

Q ss_pred             CCCeEEecc----ceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEE
Q psy16863        747 KAPKFIEGL----KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKC  822 (1075)
Q Consensus       747 ~~p~~~~~~----~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C  822 (1075)
                      .+|.|...+    ....+.+|+++.|.|.+.|.|.+.++|+|+|..+....++.......+...|.|.+++.+|+|.|+|
T Consensus        14 ~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C   93 (231)
T 3ojm_B           14 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC   93 (231)
T ss_dssp             EEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred             cCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEE
Confidence            477776665    6778999999999999999999999999999999766544221122233479999999999999999


Q ss_pred             EEEeCCceEEEEEEEEEEecCCCCCCeeeee--cceeecCCCeEEEEEEEEccCCCeeEEEE----CCEEcCCCC-----
Q psy16863        823 IATNDFGQSITSCFLKLNVPKHYKKPKFLEE--LKAVLSEGGAVNLECKVIGVPQPTLKWFK----DGRELKAGD-----  891 (1075)
Q Consensus       823 ~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~--~~~~~~~g~~~~L~C~v~g~p~p~v~W~k----~g~~l~~~~-----  891 (1075)
                      .|.|..|....++.|.|..++.. +|.+...  ....+.+|+.++|.|.+.|.|.|.++|+|    +|..+..+.     
T Consensus        94 ~~~n~~~~~~~~~~l~V~~~~~~-~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~  172 (231)
T 3ojm_B           94 VVENEYGSINHTYHLDVVERSRH-RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLK  172 (231)
T ss_dssp             EEEETTEEEEEEEEEEEECCCCC-CCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEE
T ss_pred             EEecccCcccccEEEEEEcCCCC-CCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEe
Confidence            99999999988899998875533 2333221  22346789999999999999999999999    887775432     


Q ss_pred             -----------eeEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEecCChh
Q psy16863        892 -----------IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKSQ  933 (1075)
Q Consensus       892 -----------~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~  933 (1075)
                                 ...|.+......|+|.|+|.|.|..|..+.++.|.|..++..
T Consensus       173 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~  225 (231)
T 3ojm_B          173 VLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQA  225 (231)
T ss_dssp             EEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC--
T ss_pred             EecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCC
Confidence                       124667777788999999999999999999999999876544

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.89  E-value=1.5e-22  Score=203.97  Aligned_cols=175  Identities=23%  Similarity=0.440  Sum_probs=134.5

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeec--CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEE
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVE--SDNVKILKETLGVCHLKIHALEVADQAEWKCIAT  825 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~  825 (1075)
                      +|.|...+.+..+.+|+++.|.|.+.+.|.+.+.|+|++..+..  ..++.+.  ..+  .|.|.+++.+|+|.|+|.|.
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~--~~~--~L~i~~~~~~d~G~Y~C~~~   77 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAML--ANN--NLQILNINKSDEGIYRCEGR   77 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEEC--TTS--CEEETTCCGGGCEEEEEEEE
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEe--cCC--CEEEeeCCHhHCcEEEEEEE
Confidence            67888888889999999999999999999999999999988864  3444432  222  69999999999999999999


Q ss_pred             eCCceEE--EEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCCeeEEEECCEEcCCCCee-------EEE
Q psy16863        826 NDFGQSI--TSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIH-------KII  896 (1075)
Q Consensus       826 N~~G~~~--~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~~-------~i~  896 (1075)
                      |..+...  ....+.|..++.+..+..  .....+.+|+.++|.|.+.|.|.|.|+|+|||..+..+.++       .|.
T Consensus        78 ~~~~~~~~~~~~~l~v~~~p~~~~~~~--~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~L~  155 (189)
T 2v5t_A           78 VEARGEIDFRDIIVIVNVPPAISMPQK--SFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELT  155 (189)
T ss_dssp             ETTTTEEEEEEEEEEEEEEEEEECSCC--EEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETTTTEEE
T ss_pred             EcCCCceEEEEEEEEecCCCCcccccc--cccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecCCCEEE
Confidence            9986544  345566665543222111  11223678999999999999999999999999999865433       456


Q ss_pred             ECCCCceeeEEEEEEEEeCCeeEEEEEEEEEe
Q psy16863        897 SGEDGTCCLGIYTCEAHNCMGTTSSSAALLGF  928 (1075)
Q Consensus       897 ~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~  928 (1075)
                      +......|+|.|+|.|.|..|..++++.|.|+
T Consensus       156 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          156 VRNIINSDGGPYVCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EcCCChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence            66777789999999999999999999998875

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.89  E-value=1.1e-22  Score=205.58  Aligned_cols=176  Identities=24%  Similarity=0.351  Sum_probs=142.1

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeec-CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVE-SDNVKILKETLGVCHLKIHALEVADQAEWKCIAT  825 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~  825 (1075)
                      .+|.|...+....+.+|+++.|.|.+.|.|.+.++|+|+|..+.. ..++.+...+   ..|.|.+++.+|+|.|+|.|.
T Consensus         6 ~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~~~   82 (192)
T 2iep_A            6 KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG---QLLTILSVEDSDDGIYCCTAN   82 (192)
T ss_dssp             EEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGG---TEEEESSCCGGGCEEEEEEEE
T ss_pred             CCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCc---cEEEEcCCCcccCeEEEEEEE
Confidence            578888888888999999999999999999999999999999875 4555554222   279999999999999999999


Q ss_pred             eCCce-EEEEEEEEEEecCCCCCCeeeeec-ceeecCCCeEEEEEEEEccCCCeeEEEECCEEcCCCCee------EEEE
Q psy16863        826 NDFGQ-SITSCFLKLNVPKHYKKPKFLEEL-KAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIH------KIIS  897 (1075)
Q Consensus       826 N~~G~-~~~s~~l~V~~~~~~~~p~~~~~~-~~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~~------~i~~  897 (1075)
                      |..|. ......|.|..++.     +.... ...+.+|+.++|.|.+.|.|.|.|+|+|+|..+..+.++      .|.+
T Consensus        83 ~~~~~~~~~~~~l~v~~~p~-----~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i  157 (192)
T 2iep_A           83 NGVGGAVESCGALQVKMKPK-----ITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRI  157 (192)
T ss_dssp             CSSSCCEEEEEEEEEEEEEE-----EEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTSCEEE
T ss_pred             cCCCceeEeEEEEEEEeCCc-----cccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCCcEEE
Confidence            99988 45567888876543     33222 234678999999999999999999999999999766543      3566


Q ss_pred             CCCCceeeEEEEEEEEeCCeeEEE-EEEEEEecC
Q psy16863        898 GEDGTCCLGIYTCEAHNCMGTTSS-SAALLGFED  930 (1075)
Q Consensus       898 ~~~~~~d~G~Y~C~a~N~~G~~~~-~~~l~v~~~  930 (1075)
                      ......|+|.|+|.|.|..|...+ .+.|.|..+
T Consensus       158 ~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~p  191 (192)
T 2iep_A          158 HNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVF  191 (192)
T ss_dssp             SSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred             ecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeC
Confidence            677778999999999999999854 577776544

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.89  E-value=3.6e-22  Score=199.67  Aligned_cols=173  Identities=21%  Similarity=0.360  Sum_probs=136.3

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeC-cEEEEEEccccCCCCeEEEEEEEe
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETL-GVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      +|.|...+.+..+.+|+++.|.|.+.+.|.+.++|+|+|..+....+..+..... ....|.|.+++.+|+|.|+|.|.|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   81 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVED   81 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESS
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEc
Confidence            4677777888899999999999999999999999999999998776665544322 146899999999999999999999


Q ss_pred             CCceEE-EEEEEEEEecCCCCCCeeeeecc-eeecCCCeEEEEEEEEccCCC-eeEEEECCEEcCCC--CeeEEEECCCC
Q psy16863        827 DFGQSI-TSCFLKLNVPKHYKKPKFLEELK-AVLSEGGAVNLECKVIGVPQP-TLKWFKDGRELKAG--DIHKIISGEDG  901 (1075)
Q Consensus       827 ~~G~~~-~s~~l~V~~~~~~~~p~~~~~~~-~~~~~g~~~~L~C~v~g~p~p-~v~W~k~g~~l~~~--~~~~i~~~~~~  901 (1075)
                      ..|... ..+.|.|..+     |.+...+. ..+.+|+.+.|.|.+.|.|.| .|+|+|+|..+...  ....|.+... 
T Consensus        82 ~~~~~~~~~~~l~V~~~-----p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~L~i~~~-  155 (182)
T 1rhf_A           82 GGETEISQPVWLTVEGV-----PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGV-  155 (182)
T ss_dssp             CTTCEECCCEEEEEECS-----CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEESSEEEEECCC-
T ss_pred             CCCcEEEEEEEEEEecC-----CeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCCCceEEEEecc-
Confidence            987643 4778888765     34443333 347799999999999999999 99999999999754  3456666555 


Q ss_pred             ceeeEEEEEEEEeCCeeEEE-EEEEEE
Q psy16863        902 TCCLGIYTCEAHNCMGTTSS-SAALLG  927 (1075)
Q Consensus       902 ~~d~G~Y~C~a~N~~G~~~~-~~~l~v  927 (1075)
                       .|+|.|+|.|.|..|...+ ++.|.|
T Consensus       156 -~d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          156 -TQSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             -SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             -ccCeEEEEEEECCCCCcccceEEEEe
Confidence             4799999999999999864 666665

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.89  E-value=5.8e-22  Score=199.96  Aligned_cols=175  Identities=18%  Similarity=0.260  Sum_probs=139.1

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCC-CCeEEEEE-CCEEee-cCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEE
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISP-EPKVSWFR-DDQQVV-ESDNVKILKETLGVCHLKIHALEVADQAEWKCIA  824 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p-~p~v~W~k-~g~~i~-~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A  824 (1075)
                      |+.|...+.+..+.+|+++.|.|.+.+.| .+.++|+| +|..+. ...++.+.....+...|.|.+++.+|+|.|+|.|
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEE
Confidence            56677777888899999999999999987 88999999 898887 5567777665567789999999999999999999


Q ss_pred             EeCCc-eEEEEEEEEEEecCCCCCCeeeeecc-eeecCCCeEEEEEEEEccCCCeeEEEECCEEcCCCC--------eeE
Q psy16863        825 TNDFG-QSITSCFLKLNVPKHYKKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGD--------IHK  894 (1075)
Q Consensus       825 ~N~~G-~~~~s~~l~V~~~~~~~~p~~~~~~~-~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~--------~~~  894 (1075)
                      .|..| .....+.|.|..+     |.+...+. ..+.+|+.++|.|.+.|.|.|.|+|+|+|..+....        ...
T Consensus        82 ~~~~~~~~~~~~~l~v~~~-----p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~  156 (191)
T 1epf_A           82 TAEDGTQSEATVNVKIFQK-----LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY  156 (191)
T ss_dssp             EETTTEEEEEEEEEEEECC-----SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSC
T ss_pred             EcCCCcceEEEEEEEeecC-----ceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCCe
Confidence            99984 5555666666643     44433332 347799999999999999999999999999985321        114


Q ss_pred             EEECCCCceeeEEEEEEEEeCCeeEEEEEEEEE
Q psy16863        895 IISGEDGTCCLGIYTCEAHNCMGTTSSSAALLG  927 (1075)
Q Consensus       895 i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v  927 (1075)
                      |.+......|+|.|+|.|.|.+|.......+.+
T Consensus       157 L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          157 LQIRGIKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             EEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             EEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence            666777788999999999999976665555544

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.89  E-value=9.5e-22  Score=198.09  Aligned_cols=169  Identities=16%  Similarity=0.255  Sum_probs=136.7

Q ss_pred             CCCeEEeccceeeeec-CCeEEEEEEEecCCC--CeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEE
Q psy16863        747 KAPKFIEGLKSCQATV-NEEFKFTVQVSISPE--PKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCI  823 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~-g~~~~l~C~v~g~p~--p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~  823 (1075)
                      .||.+.... ...+.. |+++.|.|.+.+.|.  +.++|+|+|.++..+....      ....|.|.+++.+|+|.|+|.
T Consensus         2 ~~P~i~~~~-~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~------~~~~L~i~~~~~~d~G~Y~C~   74 (190)
T 2wv3_A            2 NEPRIVTSE-EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA------SNMEYRINKPRAEDSGEYHCV   74 (190)
T ss_dssp             -CCEEEECC-CEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC------SEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCcccccc-eEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe------ccEEEEEecCCcccCEEEEEE
Confidence            477777643 445556 999999999999887  8999999999997665332      346899999999999999999


Q ss_pred             EEeCCceEEEEEEEEEEecCCCCCCeeeeecc-eeecCCCeEEEEEEEEccCCCeeEEEE--CCEEcC---CCCe-----
Q psy16863        824 ATNDFGQSITSCFLKLNVPKHYKKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFK--DGRELK---AGDI-----  892 (1075)
Q Consensus       824 A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~-~~~~~g~~~~L~C~v~g~p~p~v~W~k--~g~~l~---~~~~-----  892 (1075)
                      |.|. |....++.|.|..+|     .+..... ..+.+|+.+.|.|.+.|.|.|.|+|+|  +|..+.   .+.+     
T Consensus        75 ~~n~-~~~~~~~~l~V~~~p-----~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~  148 (190)
T 2wv3_A           75 YHFV-SAPKANATIEVKAAP-----DITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIIN  148 (190)
T ss_dssp             EEET-TEEEEEEEEEEECCC-----EEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEE
T ss_pred             EEeC-CcccccEEEEEecCC-----cccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEec
Confidence            9999 988889999998754     4443333 247799999999999999999999999  888774   2222     


Q ss_pred             ----eEEEECCCC-ceeeEEEEEEEEeCCeeEEEEEEEEEe
Q psy16863        893 ----HKIISGEDG-TCCLGIYTCEAHNCMGTTSSSAALLGF  928 (1075)
Q Consensus       893 ----~~i~~~~~~-~~d~G~Y~C~a~N~~G~~~~~~~l~v~  928 (1075)
                          ..|.+.... ..|+|.|+|.|.|.+|..++++.|.|.
T Consensus       149 ~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          149 KENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             CSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence                256677777 689999999999999999999888774

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.89  E-value=1.1e-22  Score=213.80  Aligned_cols=186  Identities=18%  Similarity=0.332  Sum_probs=142.9

Q ss_pred             CCCeEEecc----ceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEE
Q psy16863        747 KAPKFIEGL----KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKC  822 (1075)
Q Consensus       747 ~~p~~~~~~----~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C  822 (1075)
                      .+|.|+.+.    ....+.+|+++.|.|.+.|.|.+.++|+|+|..+....++.......+...|.|.+++.+|+|.|+|
T Consensus        10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C   89 (241)
T 3grw_A           10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC   89 (241)
T ss_dssp             -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred             CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEE
Confidence            477777653    3578999999999999999999999999999999765443211112233479999999999999999


Q ss_pred             EEEeCCceEEEEEEEEEEecCCCCCCeeeee-c-ceeecCCCeEEEEEEEEccCCCeeEEEE----CCEEcCCCC-----
Q psy16863        823 IATNDFGQSITSCFLKLNVPKHYKKPKFLEE-L-KAVLSEGGAVNLECKVIGVPQPTLKWFK----DGRELKAGD-----  891 (1075)
Q Consensus       823 ~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~-~-~~~~~~g~~~~L~C~v~g~p~p~v~W~k----~g~~l~~~~-----  891 (1075)
                      .|.|..|....+..|.|...+.. .|.+... . ...+.+|+.++|.|.+.|.|.|.|+|+|    ||..+..+.     
T Consensus        90 ~~~~~~~~~~~~~~l~V~~~~~~-~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~  168 (241)
T 3grw_A           90 VVENKFGSIRQTYTLDVLERSPH-RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVT  168 (241)
T ss_dssp             EEEETTEEEEEEEEEEEECCCCC-CCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEE
T ss_pred             EEeecCCceEEEEEEEEeccCCC-CceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeee
Confidence            99999999988888888764432 2333221 2 2346789999999999999999999999    888876543     


Q ss_pred             ------------eeEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEecCChh
Q psy16863        892 ------------IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKSQ  933 (1075)
Q Consensus       892 ------------~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~  933 (1075)
                                  ...|.+......|+|.|+|.|.|..|..+.++.|.|..++..
T Consensus       169 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~  222 (241)
T 3grw_A          169 VLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAA  222 (241)
T ss_dssp             EEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC------
T ss_pred             eeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCC
Confidence                        234677777888999999999999999999999999776543

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.89  E-value=1.6e-21  Score=200.28  Aligned_cols=181  Identities=24%  Similarity=0.432  Sum_probs=147.5

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEE-EcCCEEEEEEccc-CCCCceeEEEEEE
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQ-HDGNFYFIDLSSV-SLFDSGRWTCLAE  425 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~-~~g~~~~L~I~~v-~~~d~G~Y~C~a~  425 (1075)
                      .+|.|...+.+..+.+|+++.|.|.+.|.|.+.|.|+|+|..+..+...... .++....|.|.++ +.+|+|.|+|.|.
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~   84 (212)
T 2yd6_A            5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVAS   84 (212)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEE
T ss_pred             CCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEE
Confidence            4788888888999999999999999999999999999999999766543333 3446678999999 5999999999999


Q ss_pred             eCCCceeeEEEEEeecCCCC--CCCeeeeecce-EEecCCeEEEEEEEECCCCCeEEEEeCCEeccCC------------
Q psy16863        426 NAVGRSHCSCELSVLVPKAY--KAPFFTKELEA-ILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAG------------  490 (1075)
Q Consensus       426 n~~g~~~~s~~l~V~~~~~~--~~p~~~~~~~~-~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~------------  490 (1075)
                      |..|....++.|.|...+..  ..|.+...+.. .+.+|+.+.|.|.+.|.|.+.+.|+|+|..+...            
T Consensus        85 n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~  164 (212)
T 2yd6_A           85 NNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSE  164 (212)
T ss_dssp             ETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEET
T ss_pred             cCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecC
Confidence            99999888888888765432  22455544433 4788999999999999999999999999998653            


Q ss_pred             CEEEEEeCCCCCCCcEEEEEEEEecceeeEEE-EEEEEe
Q psy16863        491 DIFALTANPKDPSSLGTYTCEAVNCMGAAFST-SRVIAR  528 (1075)
Q Consensus       491 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~v~v~  528 (1075)
                      ....|.|..+..+|+|.|+|.|.|..|...++ +.+.|.
T Consensus       165 ~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~  203 (212)
T 2yd6_A          165 SIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR  203 (212)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEE
Confidence            23678999999999999999999999987654 555554

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.89  E-value=3.5e-22  Score=206.11  Aligned_cols=177  Identities=18%  Similarity=0.237  Sum_probs=142.2

Q ss_pred             hccCCCCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEE
Q psy16863        742 LLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWK  821 (1075)
Q Consensus       742 ~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~  821 (1075)
                      +......+.|...+.+..+.+|+++.|.|.+.+.|.+.++|+|+|..+..+.          ...|.|.+++.+|+|.|+
T Consensus        12 ~~~~~~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~   81 (218)
T 3k0w_A           12 SGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN----------TSELIFNAVHVKDAGFYV   81 (218)
T ss_dssp             -------CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCC----------SSEEEETTCCGGGCEEEE
T ss_pred             CCccCCCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCC----------CCEEEEccCChhhCeEeE
Confidence            3344578899999999999999999999999999999999999999886543          237999999999999999


Q ss_pred             EEEEeCCceE-EEEEEEEEEecCCC----------CCCeeeeecc-eeecCCCeEEEEEEEEccCCCeeEEEECCEEcCC
Q psy16863        822 CIATNDFGQS-ITSCFLKLNVPKHY----------KKPKFLEELK-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKA  889 (1075)
Q Consensus       822 C~A~N~~G~~-~~s~~l~V~~~~~~----------~~p~~~~~~~-~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~  889 (1075)
                      |.|.|..|.. ...+.|.|..++..          .+|.+...+. ..+.+|+.++|.|.+.|.|.|.|+|+|||..+..
T Consensus        82 C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~  161 (218)
T 3k0w_A           82 CRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTH  161 (218)
T ss_dssp             EEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTT
T ss_pred             EEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCC
Confidence            9999998865 34577888765311          2245544443 3477999999999999999999999999999998


Q ss_pred             CCeeEEEECCCCceeeEEEEEEEEeCCeeEE-EEEEEEEe
Q psy16863        890 GDIHKIISGEDGTCCLGIYTCEAHNCMGTTS-SSAALLGF  928 (1075)
Q Consensus       890 ~~~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~-~~~~l~v~  928 (1075)
                      +....|.+......|+|.|+|.|.|..|... ..+.|.|.
T Consensus       162 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  201 (218)
T 3k0w_A          162 ETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID  201 (218)
T ss_dssp             CCSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEEC
T ss_pred             CCCCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEe
Confidence            8888898999999999999999999999844 45555554

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.89  E-value=3.8e-21  Score=193.69  Aligned_cols=171  Identities=22%  Similarity=0.375  Sum_probs=142.2

Q ss_pred             CCceeeccceeeec-CCeEEEEEEEecCCC--CeEEEEECCEEcCCCCe------EEEe--ecCCCceEEEEEEecCceE
Q psy16863        651 KPRFVESLKAVMTD-DGLVSFECKVVGFPT--PTLQWFKDNEELKPGDV------YQLT--GTSSLGSYCCVAKNVMGKA  719 (1075)
Q Consensus       651 ~p~~~~~~~~~~~~-g~~~~l~C~v~g~p~--p~v~W~k~g~~l~~~~~------~~~~--~~~d~G~Y~C~a~N~~g~~  719 (1075)
                      +|.+.......+.+ |+.+.|.|.+.+.|.  +.++|+|+|..+..+..      +.+.  ..+|+|.|+|.|.|. |..
T Consensus         3 ~P~i~~~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~   81 (190)
T 2wv3_A            3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHFV-SAP   81 (190)
T ss_dssp             CCEEEECCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCCSEEEEEESSCCGGGCEEEEEEEEET-TEE
T ss_pred             CCcccccceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEeccEEEEEecCCcccCEEEEEEEEeC-Ccc
Confidence            45555555555556 889999999998887  78999999999876543      3343  347999999999999 888


Q ss_pred             EEEEEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEE--CCEEee---cCCc
Q psy16863        720 ESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFR--DDQQVV---ESDN  794 (1075)
Q Consensus       720 ~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k--~g~~i~---~~~~  794 (1075)
                      ..++.|.|.                  .+|.+...+....+..|+.+.|.|.+.|.|.|.++|+|  +|.++.   .+.+
T Consensus        82 ~~~~~l~V~------------------~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~  143 (190)
T 2wv3_A           82 KANATIEVK------------------AAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGR  143 (190)
T ss_dssp             EEEEEEEEE------------------CCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSC
T ss_pred             cccEEEEEe------------------cCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCe
Confidence            888999987                  47888887888889999999999999999999999999  888875   4566


Q ss_pred             EEEEEeeCcEEEEEEcccc-CCCCeEEEEEEEeCCceEEEEEEEEEEe
Q psy16863        795 VKILKETLGVCHLKIHALE-VADQAEWKCIATNDFGQSITSCFLKLNV  841 (1075)
Q Consensus       795 ~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~A~N~~G~~~~s~~l~V~~  841 (1075)
                      +.+... .+...|.|.+++ .+|+|.|+|.|.|..|....++.|.|.+
T Consensus       144 ~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~V  190 (190)
T 2wv3_A          144 FFIINK-ENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVRV  190 (190)
T ss_dssp             EEEEEC-SSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             EEEecC-CCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEEC
Confidence            666543 345689999999 7999999999999999999998888863

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.88  E-value=3.8e-22  Score=205.18  Aligned_cols=168  Identities=21%  Similarity=0.265  Sum_probs=135.5

Q ss_pred             cCCeEEEEEEEecC-CCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy16863        762 VNEEFKFTVQVSIS-PEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLN  840 (1075)
Q Consensus       762 ~g~~~~l~C~v~g~-p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~  840 (1075)
                      .++.+.|.|.+.+. |.+.++|+|+|.++..+.++.+...+ +...|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus        16 ~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~   94 (212)
T 2r15_A           16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTG-EQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ   94 (212)
T ss_dssp             CSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEET-TEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHH
T ss_pred             cCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeC-CEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEe
Confidence            67889999999985 58899999999999988888876543 56789999999999999999999999988777666554


Q ss_pred             ec---------------CCCCCCeeeeec-c-eeecCCCeEEEEEEEEccCCCeeEEEECCEEcCCCCe----------e
Q psy16863        841 VP---------------KHYKKPKFLEEL-K-AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDI----------H  893 (1075)
Q Consensus       841 ~~---------------~~~~~p~~~~~~-~-~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~----------~  893 (1075)
                      ..               .....|.+.... . ..+.+|+.++|.|.+.|.|.|.|+|+|||.++..+.+          .
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~  174 (212)
T 2r15_A           95 AYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTA  174 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTTEE
T ss_pred             eccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCCEE
Confidence            20               001123333322 2 2477999999999999999999999999999986543          3


Q ss_pred             EEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEecC
Q psy16863        894 KIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFED  930 (1075)
Q Consensus       894 ~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~  930 (1075)
                      .|.+......|+|.|+|.|.|.+|..+.++.|.|+.|
T Consensus       175 ~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  211 (212)
T 2r15_A          175 YFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP  211 (212)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEcc
Confidence            5666677788999999999999999999999988754

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.88  E-value=3.2e-21  Score=195.16  Aligned_cols=172  Identities=19%  Similarity=0.358  Sum_probs=142.2

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEe-cCCCcEEEEEECCEecCCCC--cEEEEEcCC-------EEEEEEcccCCCCce
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENK--IYRTQHDGN-------FYFIDLSSVSLFDSG  418 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~-g~p~~~v~W~k~g~~l~~~~--~~~~~~~g~-------~~~L~I~~v~~~d~G  418 (1075)
                      +|.|+..+.+..+.+|+++.|.|.+. |.|.+.|.|+|+|..+....  ++.+.....       ...|.|.+++.+|+|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            78899999999999999999999998 89999999999999998763  444443332       468999999999999


Q ss_pred             eEEEEEEeCCCceee-EEEEEeecCCCCCCCeeeeecc-eEEecCCeEEEEEEEECCCCC-eEEEEeCCEeccCC----C
Q psy16863        419 RWTCLAENAVGRSHC-SCELSVLVPKAYKAPFFTKELE-AILTEQGTVSLECKVMGIPTP-QLIWYKDNKKIKAG----D  491 (1075)
Q Consensus       419 ~Y~C~a~n~~g~~~~-s~~l~V~~~~~~~~p~~~~~~~-~~~~~g~~v~l~C~~~g~p~~-~v~W~~~g~~l~~~----~  491 (1075)
                      .|+|.|.|..|.... .+.|.|..+|     .+...+. ..+.+|+.+.|.|.+.|.|.| .|.|+|++..+...    .
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~l~V~~~p-----~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~  156 (195)
T 2c5d_C           82 QYQCLVFLGHQTFVSQPGYVGLEGLP-----YFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGP  156 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECCSC-----EEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTSSC
T ss_pred             EEEEEEEeCCCceecccEEEEEecCC-----eEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCcCC
Confidence            999999998776543 3777776654     4443333 347889999999999999999 99999999998764    4


Q ss_pred             EEEEEeCCCCCCCcEEEEEEEEecceeeE-EEEEEEE
Q psy16863        492 IFALTANPKDPSSLGTYTCEAVNCMGAAF-STSRVIA  527 (1075)
Q Consensus       492 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~v~v  527 (1075)
                      ...|.|..+.  |+|.|+|.|.|..|... ..+.|.|
T Consensus       157 ~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          157 QRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             CEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            5688888876  78999999999999886 6777777

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.88  E-value=3.3e-22  Score=206.45  Aligned_cols=181  Identities=27%  Similarity=0.440  Sum_probs=139.6

Q ss_pred             CCCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCC--cEEEEEeeCc-EEEEEEccccCCCCeEEEE
Q psy16863        746 NKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESD--NVKILKETLG-VCHLKIHALEVADQAEWKC  822 (1075)
Q Consensus       746 ~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~--~~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C  822 (1075)
                      ..+|.|...+.+..+.+|+++.|.|.+.|.|.+.|+|+|+|..+....  ...+...... ...|.|.+++.+|+|.|+|
T Consensus         7 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C   86 (217)
T 2vr9_A            7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC   86 (217)
T ss_dssp             CCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEE
T ss_pred             cCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEE
Confidence            379999999999999999999999999999999999999999987642  2222222211 2234789999999999999


Q ss_pred             EEEeCCceEEE-EEEEEEEecCCCCCCeeeeec-ceeecCCCeEEEEEEE-EccCCCeeEEEECCEEcCCC--------C
Q psy16863        823 IATNDFGQSIT-SCFLKLNVPKHYKKPKFLEEL-KAVLSEGGAVNLECKV-IGVPQPTLKWFKDGRELKAG--------D  891 (1075)
Q Consensus       823 ~A~N~~G~~~~-s~~l~V~~~~~~~~p~~~~~~-~~~~~~g~~~~L~C~v-~g~p~p~v~W~k~g~~l~~~--------~  891 (1075)
                      .|.|..|.... ++.|.|...+    |.+...+ ...+.+|+.++|.|.+ .|.|.|.|+|+|+|.++...        .
T Consensus        87 ~~~n~~g~~~~~~~~l~v~~~~----~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~  162 (217)
T 2vr9_A           87 VAKNRVGQAVSRHASLQIAVLR----DDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASS  162 (217)
T ss_dssp             EEEETTEEEECCCEEEEECEEC----CSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCC
T ss_pred             EEecCCCccccccceEEEEEeC----CCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCC
Confidence            99999997643 5666666522    1222222 2347789999999999 89999999999999998732        2


Q ss_pred             e------eEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEecC
Q psy16863        892 I------HKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFED  930 (1075)
Q Consensus       892 ~------~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~  930 (1075)
                      +      ..|.+......|+|.|+|.|.|.+|...++..++++..
T Consensus       163 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~~  207 (217)
T 2vr9_A          163 RVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQV  207 (217)
T ss_dssp             SEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC-
T ss_pred             cEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEEEe
Confidence            2      24666777778999999999999999998888777643

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.87  E-value=1.6e-21  Score=196.83  Aligned_cols=172  Identities=15%  Similarity=0.091  Sum_probs=133.4

Q ss_pred             cceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCcc-------------c----cCCCeEEEeeCCeEEEEEc
Q psy16863        251 DIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHP-------------I----FGNRFRAINRDGRTELNIR  313 (1075)
Q Consensus       251 ~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~-------------~----~~~~~~~~~~~~~~~L~I~  313 (1075)
                      ++++..|+.++|.|.+...       .+++.+.+.|++++...             .    ...++.+....+...|.|.
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v-------~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~   74 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRV-------SLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVT   74 (203)
T ss_dssp             CCEEETTCCEEEEEECSST-------TCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEES
T ss_pred             CeEEEcCCCEEEEeeeecc-------CCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEc
Confidence            4578899999999965321       12334455555543211             0    1334566677788899999


Q ss_pred             ccCCCCCEEEEEEEEeCCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecC--
Q psy16863        314 RVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLE--  391 (1075)
Q Consensus       314 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~--  391 (1075)
                      +++.+|+|.|+|.|.|..|..+..+.|.|..    ||.+...+....+.+|++++|.|.+.|.|.|.|+|+|++..+.  
T Consensus        75 ~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~----p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~  150 (203)
T 4fa8_A           75 AANISHDGNYLCRMKLGETEVTKQEHLSVVK----PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAP  150 (203)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEEEE----EEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC-------
T ss_pred             cCCHHHCeEEEEEEEcCCCcEEEEEEEEecC----CceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCc
Confidence            9999999999999999999999999999984    7778777888899999999999999999999999998775542  


Q ss_pred             --CCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceee
Q psy16863        392 --ENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHC  433 (1075)
Q Consensus       392 --~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~  433 (1075)
                        .+.++.+..+|....|.|.++..+|+|.|+|.|+|..|..+.
T Consensus       151 ~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          151 TAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             -----CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             ccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence              345667777888888899999999999999999999998764

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.87  E-value=7.5e-21  Score=195.43  Aligned_cols=189  Identities=14%  Similarity=0.256  Sum_probs=154.0

Q ss_pred             eeeccceeEEEEEecCCCceEEEEecC-CCeeeEEecCCCccccCCCeEEEeeCCeEEEEEcccCCCCCEEEEEEEEeCC
Q psy16863        253 AVKVGTRARLLVEIRSPTEIKCQFDLN-NTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNES  331 (1075)
Q Consensus       253 ~v~~g~~~~l~c~~~~~~~~~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~  331 (1075)
                      .+..|++++|.|... ...+.|.+.+. +.+.+.|++++..+....++++...++...|.|.+++.+|+|.|+|.|.|..
T Consensus         4 ~~~~g~~v~l~c~~~-~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~   82 (212)
T 2r15_A            4 IALSATDLKIQSTAE-GIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGK   82 (212)
T ss_dssp             --CCBCCCEEEECSS-EEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSS
T ss_pred             cceecCcEEEEEcCc-eEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCC
Confidence            456788888888543 34678888875 4778889888766666788888888888899999999999999999999998


Q ss_pred             eeEEEEEEEEEec-----------------CCCCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCC
Q psy16863        332 GYSTAKFELSVES-----------------QVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENK  394 (1075)
Q Consensus       332 g~~~~~~~l~V~~-----------------~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~  394 (1075)
                      |.....+.|.|..                 ....|+.+...+....+.+|+.+.|.|.+.|.|.+.+.|+|+|..+..+.
T Consensus        83 ~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~  162 (212)
T 2r15_A           83 TGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTD  162 (212)
T ss_dssp             CEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCS
T ss_pred             cceEEEEEEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCC
Confidence            8877777766541                 01123333344556789999999999999999999999999999999888


Q ss_pred             cEEEEEc-CCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeecC
Q psy16863        395 IYRTQHD-GNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP  442 (1075)
Q Consensus       395 ~~~~~~~-g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~  442 (1075)
                      ++.+... +....|.|.++..+|+|.|+|.|.|..|....++.|.|.+|
T Consensus       163 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  211 (212)
T 2r15_A          163 HCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP  211 (212)
T ss_dssp             SEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEcc
Confidence            8877765 77788999999999999999999999999988888888765

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.87  E-value=7.5e-21  Score=190.01  Aligned_cols=172  Identities=23%  Similarity=0.356  Sum_probs=138.4

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCC--EEEEEEcccCCCCceeEEEEEEe
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGN--FYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~--~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      +|.|...+.+..+.+|+++.|.|.+.+.|.+.+.|+|+|..+....+..+..++.  ...|.|.+++.+|+|.|+|.+.|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   81 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVED   81 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESS
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEc
Confidence            4667777788899999999999999998999999999999998877666655543  35799999999999999999999


Q ss_pred             CCCc-eeeEEEEEeecCCCCCCCeeeeecc-eEEecCCeEEEEEEEECCCCC-eEEEEeCCEeccCC--CEEEEEeCCCC
Q psy16863        427 AVGR-SHCSCELSVLVPKAYKAPFFTKELE-AILTEQGTVSLECKVMGIPTP-QLIWYKDNKKIKAG--DIFALTANPKD  501 (1075)
Q Consensus       427 ~~g~-~~~s~~l~V~~~~~~~~p~~~~~~~-~~~~~g~~v~l~C~~~g~p~~-~v~W~~~g~~l~~~--~~~~l~i~~~~  501 (1075)
                      ..|. ....+.|.|..+|     .+...+. ..+.+|+.+.|.|.+.|.|.| .+.|++++..+...  ....|.|..+ 
T Consensus        82 ~~~~~~~~~~~l~V~~~p-----~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~L~i~~~-  155 (182)
T 1rhf_A           82 GGETEISQPVWLTVEGVP-----FFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGV-  155 (182)
T ss_dssp             CTTCEECCCEEEEEECSC-----EEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEESSEEEEECCC-
T ss_pred             CCCcEEEEEEEEEEecCC-----eEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCCCceEEEEecc-
Confidence            8775 3457788887654     4443333 347899999999999999999 99999999998665  4568888877 


Q ss_pred             CCCcEEEEEEEEecceeeEE-EEEEEE
Q psy16863        502 PSSLGTYTCEAVNCMGAAFS-TSRVIA  527 (1075)
Q Consensus       502 ~~d~G~Y~C~a~n~~g~~~~-~~~v~v  527 (1075)
                       +|+|.|+|.|.|..|...+ ++.|.|
T Consensus       156 -~d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          156 -TQSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             -SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             -ccCeEEEEEEECCCCCcccceEEEEe
Confidence             5899999999999998854 666665

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.87  E-value=2.3e-22  Score=206.78  Aligned_cols=183  Identities=21%  Similarity=0.411  Sum_probs=138.3

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCc----EEEEEeeCcE--EEEEEccccCCCCeEE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDN----VKILKETLGV--CHLKIHALEVADQAEW  820 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~----~~~~~~~~~~--~~L~I~~~~~~D~G~Y  820 (1075)
                      .||.|...+.+..+.+|+++.|.|.+.|.|.+.++|+|+|..+.....    ..........  ..|.|.+++.+|+|.|
T Consensus         8 ~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   87 (212)
T 2v9r_A            8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVY   87 (212)
T ss_dssp             EEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEE
T ss_pred             CCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEE
Confidence            588999989999999999999999999999999999999998864431    1222122221  1355677899999999


Q ss_pred             EEEEEeCCceEE-EEEEEEEEecCCCCCCeeeeec-ceeecCCCeEEEEEEE-EccCCCeeEEEECCEEcCCCCe-----
Q psy16863        821 KCIATNDFGQSI-TSCFLKLNVPKHYKKPKFLEEL-KAVLSEGGAVNLECKV-IGVPQPTLKWFKDGRELKAGDI-----  892 (1075)
Q Consensus       821 ~C~A~N~~G~~~-~s~~l~V~~~~~~~~p~~~~~~-~~~~~~g~~~~L~C~v-~g~p~p~v~W~k~g~~l~~~~~-----  892 (1075)
                      +|.|.|..|... .++.|.|..++.    .+...+ ...+.+|+.++|.|.+ .|.|.|.|+|+|||..+..+..     
T Consensus        88 ~C~~~n~~g~~~~~~~~l~V~~~~~----~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~  163 (212)
T 2v9r_A           88 VCVARNYLGEAVSHDASLEVAILRD----DFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIR  163 (212)
T ss_dssp             EEEEEETTEEEECCCEEEEECEECS----SCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEE
T ss_pred             EEEEECCCCceeecceEEEEEeccc----cceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEcc
Confidence            999999998763 367777765432    122122 2347789999999999 8999999999999999976432     


Q ss_pred             -eEEEECCCCceeeEEEEEEEEeCCeeEEEE-EEEEEecCChh
Q psy16863        893 -HKIISGEDGTCCLGIYTCEAHNCMGTTSSS-AALLGFEDKSQ  933 (1075)
Q Consensus       893 -~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~-~~l~v~~~~~~  933 (1075)
                       ..|.+......|+|.|+|.|.|..|...+. +.|.|.++|..
T Consensus       164 ~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~  206 (212)
T 2v9r_A          164 GGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSF  206 (212)
T ss_dssp             TTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC----
T ss_pred             CCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchH
Confidence             246667777889999999999999997764 78888766543

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.86  E-value=1.2e-21  Score=199.09  Aligned_cols=169  Identities=14%  Similarity=0.212  Sum_probs=130.7

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCe-EEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPK-VSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT  825 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~-v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~  825 (1075)
                      .+|.+...+.+..+.+|+++.|.|.+.+.|.+. ++|+|+|..+....           ..|.|.+++.+|+|.|+|.|.
T Consensus         6 p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~-----------~~L~i~~v~~~D~G~Y~C~a~   74 (204)
T 3sgj_C            6 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA-----------SSYFIDAATVDDSGEYRCQTQ   74 (204)
T ss_dssp             CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS-----------SEEEESSCCGGGCEEEEEEET
T ss_pred             CCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc-----------cEEEEecccccCCEEEEEEeC
Confidence            456777777777899999999999999998776 99999999886543           379999999999999999999


Q ss_pred             eCCceEEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEcc-CCCeeEEEECCEEcCC-CCeeEEEECCCCce
Q psy16863        826 NDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGV-PQPTLKWFKDGRELKA-GDIHKIISGEDGTC  903 (1075)
Q Consensus       826 N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~-p~p~v~W~k~g~~l~~-~~~~~i~~~~~~~~  903 (1075)
                      |..  ....+.|.|..++     .+.......+.+|+.++|.|.+.+. |.+.|+|+|||..+.. .....|.+......
T Consensus        75 n~~--~s~~~~l~V~~~p-----~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~L~i~~v~~~  147 (204)
T 3sgj_C           75 LST--LSDPVQLEVHIGW-----LLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLK  147 (204)
T ss_dssp             TSB--CCCCEEEEEECSS-----EEEECSCSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEEECCCEEESSCCGG
T ss_pred             CCc--ccccEEEEEecCc-----eEecCCceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecccCCceEEECcCCcc
Confidence            853  3346677777543     3344444557799999999999766 5588999999998753 22345677888889


Q ss_pred             eeEEEEEEEEe-CCeeEEEEEEEEEecCChh
Q psy16863        904 CLGIYTCEAHN-CMGTTSSSAALLGFEDKSQ  933 (1075)
Q Consensus       904 d~G~Y~C~a~N-~~G~~~~~~~l~v~~~~~~  933 (1075)
                      |+|.|+|.|.| ..|..+..+.|.|.+++..
T Consensus       148 D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~  178 (204)
T 3sgj_C          148 DSGSYFCRGLVGSKNVSSETVQITITQGLAV  178 (204)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEEEC----
T ss_pred             cCEEEEEEEEeCCCceecCcEEEEEeCcCCC
Confidence            99999999999 5566667788888766543

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.86  E-value=4.4e-21  Score=193.67  Aligned_cols=175  Identities=25%  Similarity=0.450  Sum_probs=144.7

Q ss_pred             CCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCC-CCcEEEEEcCCEEEEEEcccCCCCceeEEEEEE
Q psy16863        347 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEE-NKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAE  425 (1075)
Q Consensus       347 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~-~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~  425 (1075)
                      +.+|.|...+.+..+.+|++++|.|.+.+.|.+.+.|+|+|..+.. ..++.+..++.  .|.|.+++.+|+|.|+|.+.
T Consensus         5 ~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~~~   82 (192)
T 2iep_A            5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQ--LLTILSVEDSDDGIYCCTAN   82 (192)
T ss_dssp             CEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGT--EEEESSCCGGGCEEEEEEEE
T ss_pred             CCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCcc--EEEEcCCCcccCeEEEEEEE
Confidence            4577888888888999999999999999988899999999998865 45666666665  58999999999999999999


Q ss_pred             eCCCc-eeeEEEEEeecCCCCCCCeeeeec-ceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccCCCEE------EEEe
Q psy16863        426 NAVGR-SHCSCELSVLVPKAYKAPFFTKEL-EAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIF------ALTA  497 (1075)
Q Consensus       426 n~~g~-~~~s~~l~V~~~~~~~~p~~~~~~-~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~~~------~l~i  497 (1075)
                      |..|. ......|.|..+|.     +...+ ...+.+|+.+.|.|.+.|.|.+.++|++++..+..+.++      .|.|
T Consensus        83 ~~~~~~~~~~~~l~v~~~p~-----~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i  157 (192)
T 2iep_A           83 NGVGGAVESCGALQVKMKPK-----ITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRI  157 (192)
T ss_dssp             CSSSCCEEEEEEEEEEEEEE-----EEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTSCEEE
T ss_pred             cCCCceeEeEEEEEEEeCCc-----cccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCCcEEE
Confidence            99887 45567788876543     33333 234789999999999999999999999999998765543      5889


Q ss_pred             CCCCCCCcEEEEEEEEecceeeEE-EEEEEEe
Q psy16863        498 NPKDPSSLGTYTCEAVNCMGAAFS-TSRVIAR  528 (1075)
Q Consensus       498 ~~~~~~d~G~Y~C~a~n~~g~~~~-~~~v~v~  528 (1075)
                      ..+..+|+|.|+|.|.|..|...+ .+.|.|.
T Consensus       158 ~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  189 (192)
T 2iep_A          158 HNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE  189 (192)
T ss_dssp             SSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             ecCChhhCEEEEEEEEcCCCcEEEEEEEEEEE
Confidence            999999999999999999998843 5677775

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.86  E-value=1.8e-21  Score=192.31  Aligned_cols=155  Identities=19%  Similarity=0.228  Sum_probs=119.9

Q ss_pred             eeeecCCeEEEEEEEec--CCCCeEEEEECCEEee----------cCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEE
Q psy16863        758 CQATVNEEFKFTVQVSI--SPEPKVSWFRDDQQVV----------ESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT  825 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g--~p~p~v~W~k~g~~i~----------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~  825 (1075)
                      +.+.+|+++.|.|....  .|.+.|+|+|++..|.          ...++.+.  .++  .|.|.+++.+|+|.|+|.|.
T Consensus         6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~--~~g--sL~I~~v~~~D~G~Y~C~~~   81 (176)
T 1hng_A            6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEIL--ANG--DLKIKNLTRDDSGTYNVTVY   81 (176)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEEC--TTS--CEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEEC--CCC--cEEEcccccccCEEEEEEEE
Confidence            55789999999995433  5677999999997653          34556552  233  49999999999999999999


Q ss_pred             eCCceE--EEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCCeeEEEECCEEcCCCCeeEEEECCCCce
Q psy16863        826 NDFGQS--ITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTC  903 (1075)
Q Consensus       826 N~~G~~--~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~~~i~~~~~~~~  903 (1075)
                      |..|..  ...+.|.|..++  ..|.+..       .+..++|.|.+.|.|.|.|+|+|||.+|..+.+..|..  ....
T Consensus        82 n~~g~~~~~~~~~l~V~~~~--~~p~i~~-------~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~~~i~~--~~~~  150 (176)
T 1hng_A           82 STNGTRILNKALDLRILEMV--SKPMIYW-------ECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSY--QWTN  150 (176)
T ss_dssp             ETTCCEEEEEEEEEEEECCC--CCCEEEE-------ETTTTEEEEECSSCSSCEEEEEETTEEEEEESSSEEEE--ECSC
T ss_pred             eCCCCEEEEEEEEEEEeCCC--CCCEEEe-------cCCcEEEEEEecCCCCcEEEEEECCEECCCCCcEEEEE--EEcc
Confidence            999987  555666666532  3344321       24459999999999999999999999998776665543  3367


Q ss_pred             eeEEEEEEEEeCCeeEEEEEEEEE
Q psy16863        904 CLGIYTCEAHNCMGTTSSSAALLG  927 (1075)
Q Consensus       904 d~G~Y~C~a~N~~G~~~~~~~l~v  927 (1075)
                      |+|.|+|.|.|.+|..++.+.|.+
T Consensus       151 d~G~Y~C~a~N~~g~~~~~~~l~~  174 (176)
T 1hng_A          151 LRAPFKCKAVNRVSQESEMEVVNC  174 (176)
T ss_dssp             CSSCEEEEEEETTEEEEEEECCCC
T ss_pred             CCeEEEEEEEecCCCceecccccC
Confidence            899999999999999998877654

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.85  E-value=1.1e-20  Score=190.21  Aligned_cols=172  Identities=17%  Similarity=0.326  Sum_probs=135.2

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCC--CCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEe
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEE--NKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~--~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      +|.|...+.+..+.+|+++.|.|.+.+.|.+.+.|+|++..+..  ..++.+..++   .|.|.+++.+|+|.|+|.+.|
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~   78 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN---NLQILNINKSDEGIYRCEGRV   78 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTS---CEEETTCCGGGCEEEEEEEEE
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCC---CEEEeeCCHhHCcEEEEEEEE
Confidence            67888888999999999999999999999999999999988763  3455544444   389999999999999999999


Q ss_pred             CCCcee--eEEEEEeecCCCCCCCeeeeec---ceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccCCCEE-------E
Q psy16863        427 AVGRSH--CSCELSVLVPKAYKAPFFTKEL---EAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIF-------A  494 (1075)
Q Consensus       427 ~~g~~~--~s~~l~V~~~~~~~~p~~~~~~---~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~~~-------~  494 (1075)
                      ..+...  ....+.|..+|.     +....   ...+.+|+.+.|.|.+.|.|.+.+.|+++|..+..+..+       .
T Consensus        79 ~~~~~~~~~~~~l~v~~~p~-----~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~  153 (189)
T 2v5t_A           79 EARGEIDFRDIIVIVNVPPA-----ISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE  153 (189)
T ss_dssp             TTTTEEEEEEEEEEEEEEEE-----EECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETTTTE
T ss_pred             cCCCceEEEEEEEEecCCCC-----cccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecCCCE
Confidence            876544  344555555442     22111   223568999999999999999999999999998765433       5


Q ss_pred             EEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEe
Q psy16863        495 LTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIAR  528 (1075)
Q Consensus       495 l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~  528 (1075)
                      |.|..+..+|+|.|+|.|.|..|....++.|.|.
T Consensus       154 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          154 LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence            8899999999999999999999999988888875

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.85  E-value=3.8e-21  Score=197.63  Aligned_cols=171  Identities=25%  Similarity=0.364  Sum_probs=131.0

Q ss_pred             CeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEee------------cCCcEEEEEeeCcEEEEEEccccCCC
Q psy16863        749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVV------------ESDNVKILKETLGVCHLKIHALEVAD  816 (1075)
Q Consensus       749 p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~------------~~~~~~~~~~~~~~~~L~I~~~~~~D  816 (1075)
                      +.|...+.+..+.+|+++.|.|.+.+.|.+.+.|+|++..+.            ...++.+..     ..|.|.+++.+|
T Consensus         2 ~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~L~i~~v~~~D   76 (212)
T 1f97_A            2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS-----SGITFSSVTRKD   76 (212)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET-----TEEEESCCCGGG
T ss_pred             ceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec-----eeEEEcccCccc
Confidence            345566677889999999999999999999999999886631            234444431     479999999999


Q ss_pred             CeEEEEEEEeCCc--eEEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEE-EEccCCCeeEEEECCE-EcCCCC-
Q psy16863        817 QAEWKCIATNDFG--QSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECK-VIGVPQPTLKWFKDGR-ELKAGD-  891 (1075)
Q Consensus       817 ~G~Y~C~A~N~~G--~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~-v~g~p~p~v~W~k~g~-~l~~~~-  891 (1075)
                      +|.|+|.|.|..|  ....++.|.|..++.+  +...  ....+.+|+.++|.|. +.|.|.|.|+|+|+|. ++..+. 
T Consensus        77 ~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~--~~~~--~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~  152 (212)
T 1f97_A           77 NGEYTCMVSEEGGQNYGEVSIHLTVLVPPSK--PTIS--VPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAK  152 (212)
T ss_dssp             CEEEEEEEEETTSSSEEEEEEEEEEEBCCCC--CEEE--CCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC----
T ss_pred             CeEEEEEEEccCCCcccEEEEEEEEEcCCCC--cccC--CccccCCCCeEEEEEEcccCcCCCEEEEEeCCccccccccc
Confidence            9999999999987  5566777888776543  2221  1234678999999999 7999999999999999 776432 


Q ss_pred             ---------------eeEEEECCCCceeeEEEEEEEEeCCeeE--EEEEEEEEe
Q psy16863        892 ---------------IHKIISGEDGTCCLGIYTCEAHNCMGTT--SSSAALLGF  928 (1075)
Q Consensus       892 ---------------~~~i~~~~~~~~d~G~Y~C~a~N~~G~~--~~~~~l~v~  928 (1075)
                                     ...|.+......|+|.|+|.|.|..|..  +..+.|.|.
T Consensus       153 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~  206 (212)
T 1f97_A          153 KTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV  206 (212)
T ss_dssp             -CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred             ccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEE
Confidence                           2346667777889999999999999998  344555554

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.85  E-value=2.9e-20  Score=187.39  Aligned_cols=174  Identities=16%  Similarity=0.288  Sum_probs=137.8

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCC-CcEEEEEE-CCEecC-CCCcEEEEE-cCCEEEEEEcccCCCCceeEEEEE
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKIHWYR-NDRKLE-ENKIYRTQH-DGNFYFIDLSSVSLFDSGRWTCLA  424 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p-~~~v~W~k-~g~~l~-~~~~~~~~~-~g~~~~L~I~~v~~~d~G~Y~C~a  424 (1075)
                      |+.|...+.+..+.+|++++|.|.+.+.+ .+.+.|+| +|..+. ...++.+.. ++....|.|.+++.+|+|.|+|.+
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEE
Confidence            56677788889999999999999998876 88999999 888876 445555543 356678999999999999999999


Q ss_pred             EeCCC-ceeeEEEEEeecCCCCCCCeeeeec-ceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccCCC--E------EE
Q psy16863        425 ENAVG-RSHCSCELSVLVPKAYKAPFFTKEL-EAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGD--I------FA  494 (1075)
Q Consensus       425 ~n~~g-~~~~s~~l~V~~~~~~~~p~~~~~~-~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~--~------~~  494 (1075)
                      .|..| .....+.|.|..++     .+...+ ...+.+|+.+.|.|.+.|.|.+.+.|++++..+....  +      ..
T Consensus        82 ~~~~~~~~~~~~~l~v~~~p-----~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~  156 (191)
T 1epf_A           82 TAEDGTQSEATVNVKIFQKL-----MFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY  156 (191)
T ss_dssp             EETTTEEEEEEEEEEEECCS-----EEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSC
T ss_pred             EcCCCcceEEEEEEEeecCc-----eEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCCe
Confidence            99984 44556666665443     444333 3347899999999999999999999999999985321  1      16


Q ss_pred             EEeCCCCCCCcEEEEEEEEecceeeEEEEEEEE
Q psy16863        495 LTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIA  527 (1075)
Q Consensus       495 l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v  527 (1075)
                      |.|..+..+|+|.|+|.|.|..|.......+.|
T Consensus       157 L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          157 LQIRGIKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             EEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             EEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence            899999999999999999999976655555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.85  E-value=1.4e-21  Score=217.47  Aligned_cols=174  Identities=18%  Similarity=0.227  Sum_probs=142.9

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCe-EEEEEEE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQA-EWKCIAT  825 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~A~  825 (1075)
                      .+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+.......   .......|.|.+++.+|+| .|+|.|.
T Consensus       157 ~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~~Y~C~a~  233 (347)
T 2ifg_A          157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKS---GGLPSLGLTLANVTSDLNRKNVTCWAE  233 (347)
T ss_dssp             CCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCC---CCSSEEEEEEESCCSTTTTCCEEECCE
T ss_pred             CCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccc---eecccceEEEeeCChHHCCCeEEEEEE
Confidence            58899888888899999999999999999999999999997654322111   1234568999999999999 9999999


Q ss_pred             eCCceEEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCCeeEEEECCEEcCCCCe-------------
Q psy16863        826 NDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDI-------------  892 (1075)
Q Consensus       826 N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~-------------  892 (1075)
                      |..|....++.|.|..+|.+    +..    ...+|+.++|.|.+.|.|.|.|+|+|+|..+..+..             
T Consensus       234 n~~g~~~~~~~l~V~~~P~i----~~~----~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~  305 (347)
T 2ifg_A          234 NDVGRAEVSVQVNVSFPASV----QLH----TAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANET  305 (347)
T ss_dssp             ETTEECCEEECCCCBEEEEE----EEC----CCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCC
T ss_pred             cCCCCEEEEEEEEEcCCCee----eec----cCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCc
Confidence            99999888888888765432    121    134789999999999999999999999999986543             


Q ss_pred             ---eEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEecCC
Q psy16863        893 ---HKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDK  931 (1075)
Q Consensus       893 ---~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~  931 (1075)
                         ..|.+......|+|.|+|.|.|.+|.+++++.|.|.++|
T Consensus       306 ~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  347 (347)
T 2ifg_A          306 VRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP  347 (347)
T ss_dssp             CEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred             ccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence               236677777889999999999999999999999887654

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.85  E-value=3.5e-21  Score=194.80  Aligned_cols=165  Identities=11%  Similarity=0.064  Sum_probs=115.3

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .+|.|...+. ..+.+|++++|.|.+.+.|. .+.|+|+|..+......  .........|.|.+++.+|+|.|+|.|.|
T Consensus         4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~--~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (196)
T 2d3v_A            4 SKATLWAEPG-SVISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQN--PLEPKNKARFSIPSMTEHHAGRYRCYYYS   79 (196)
T ss_dssp             CBCEEEEESC-SEEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEEC--CCSSTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeCCC-CcccCCCeEEEEEeCCCCCc-EEEEEECCCCCCccccc--ccCCccccEEEeccCChhHCeEEEEEEeC
Confidence            4777877665 47889999999999998776 99999999877532110  00123456899999999999999999999


Q ss_pred             CCceEE--EEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCCeeEEEECCEEcCC-----------CCee
Q psy16863        827 DFGQSI--TSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKA-----------GDIH  893 (1075)
Q Consensus       827 ~~G~~~--~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~-----------~~~~  893 (1075)
                      ..|...  ..+.|.|..+  ..+|.+.......+.+|+.++|.|.+.+.| +.|+|+|||..+..           +...
T Consensus        80 ~~g~~~~s~~~~l~V~~~--~~~p~i~~~~~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~  156 (196)
T 2d3v_A           80 PAGWSEPSDPLELVVTGF--YNKPTLSALPSPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQA  156 (196)
T ss_dssp             TTEECBCCCCEEEEEECS--SCCCEEEC-----------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCEEE
T ss_pred             CCCcCCcCccEEEEecCC--CCCCeEEccCCccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCcee
Confidence            987543  3456666542  234555443334578999999999999998 89999999988742           1235


Q ss_pred             EEEECCCCceeeEEEEEEEEeCCee
Q psy16863        894 KIISGEDGTCCLGIYTCEAHNCMGT  918 (1075)
Q Consensus       894 ~i~~~~~~~~d~G~Y~C~a~N~~G~  918 (1075)
                      .|.+......|+|.|+|.|.|..+.
T Consensus       157 ~L~I~~v~~~D~G~Y~C~a~n~~~~  181 (196)
T 2d3v_A          157 LFPVGPVTPSHRWMLRCYGSRRHIL  181 (196)
T ss_dssp             EEECCCCBTTBCEEEEEEEEETTEE
T ss_pred             EEEeeecCcccCeeEEEEEEccCCC
Confidence            6777788889999999999998764

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.85  E-value=4e-21  Score=194.47  Aligned_cols=164  Identities=13%  Similarity=0.133  Sum_probs=124.5

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .+|.|...+.. .+.+|++++|.|.+.+ |.+.+.|+|+|..+.......  ........|.|.+++.+|+|.|+|.|.|
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~--~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (196)
T 3p2t_A            4 PKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNP--LEPKNKARFSIPSMTEDYAGRYRCYYRS   79 (196)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECC--CSSSSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCccccccc--ccCCceEEEEeccCCcccCceEEEEEeC
Confidence            47777776666 7899999999999998 778999999998775421111  1112356899999999999999999999


Q ss_pred             CCceE--EEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCCeeEEEECCEEcCCC----------CeeE
Q psy16863        827 DFGQS--ITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAG----------DIHK  894 (1075)
Q Consensus       827 ~~G~~--~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~----------~~~~  894 (1075)
                      ..|..  +..+.|.|..+  ..+|.+.......+.+|+.++|.|.+.+. .+.+.|+|||..+...          ....
T Consensus        80 ~~g~~~~s~~~~l~V~~~--~~~p~~~~~~~~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~  156 (196)
T 3p2t_A           80 PVGWSQPSDPLELVMTGA--YSKPTLSALPSPLVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLRSEHGAQQHQAE  156 (196)
T ss_dssp             TTEEBCCCCCEEEEEECS--SCCCEEEEESCSEECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEEEEEEEEEEEEE
T ss_pred             CCcccCCCccEEEEecCC--CCCCEEEeCCcceecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeecccccccCcceE
Confidence            99843  33455555532  34566655444467899999999999884 5689999999876432          2345


Q ss_pred             EEECCCCceeeEEEEEEEEeCCe
Q psy16863        895 IISGEDGTCCLGIYTCEAHNCMG  917 (1075)
Q Consensus       895 i~~~~~~~~d~G~Y~C~a~N~~G  917 (1075)
                      |.+......|+|.|+|.|.|..+
T Consensus       157 L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          157 FPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EEECSCCGGGCEEEEEEEECGGG
T ss_pred             EEeCCCcccCCCeEEEEEEcCCC
Confidence            77778888999999999999987

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.85  E-value=3.9e-21  Score=203.77  Aligned_cols=195  Identities=18%  Similarity=0.215  Sum_probs=120.9

Q ss_pred             ecCCCceEEEEEEecCceEEEEEEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecCC----
Q psy16863        701 GTSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISP----  776 (1075)
Q Consensus       701 ~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p----  776 (1075)
                      ..+|+|.|+|.|.   |.....+.+.+.                  .+|.+...+....+.+|++++|.|.+.+.|    
T Consensus        12 ~~~dsg~Y~C~a~---g~~~~~~~~~~~------------------~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~   70 (254)
T 2c1o_A           12 RPGTSVKLSCKAS---GYSFTNYWMNWL------------------RELVMTQSPLTLSVTIGQPASISCKSSQSLLYSN   70 (254)
T ss_dssp             -----------------------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSS
T ss_pred             cCCccEEEEEcCc---hhhhhhhhhhee------------------eceeEEeCCceEEecCCCcEEEEeeccCcccccC
Confidence            3469999999998   554444444333                  367777778888999999999999999988    


Q ss_pred             -CCeEEEEEC--CEEee------------cCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEE-EEEEEEE
Q psy16863        777 -EPKVSWFRD--DQQVV------------ESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT-SCFLKLN  840 (1075)
Q Consensus       777 -~p~v~W~k~--g~~i~------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~-s~~l~V~  840 (1075)
                       .+.|.|+|+  |..+.            ...++.+.. ..+...|.|.+++.+|+|.|+|.|.|..+.... ...|.|.
T Consensus        71 ~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~  149 (254)
T 2c1o_A           71 GKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSG-SGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELK  149 (254)
T ss_dssp             SCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEEC
T ss_pred             CCCceEEEEeCCCCCceEEEEeccccCCCccceEEEec-CCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEEC
Confidence             489999984  33221            125666654 445779999999999999999999998664322 2356664


Q ss_pred             ecCCCCCCeeeeecc-eeecCCCeEEEEEEEEccCC--CeeEEEECCEEcCCC-----------C-----eeEEEECCCC
Q psy16863        841 VPKHYKKPKFLEELK-AVLSEGGAVNLECKVIGVPQ--PTLKWFKDGRELKAG-----------D-----IHKIISGEDG  901 (1075)
Q Consensus       841 ~~~~~~~p~~~~~~~-~~~~~g~~~~L~C~v~g~p~--p~v~W~k~g~~l~~~-----------~-----~~~i~~~~~~  901 (1075)
                      .+  ..+|.+..... .....|+.++|.|.+.|.|+  +.|+|+|||.++..+           +     ...|.+....
T Consensus       150 ~~--~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~  227 (254)
T 2c1o_A          150 RA--DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDE  227 (254)
T ss_dssp             CC--CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHH
T ss_pred             CC--CCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEecccc
Confidence            32  23455443221 12335789999999998544  459999999988765           1     1234444445


Q ss_pred             ceeeEEEEEEEEeCCeeE
Q psy16863        902 TCCLGIYTCEAHNCMGTT  919 (1075)
Q Consensus       902 ~~d~G~Y~C~a~N~~G~~  919 (1075)
                      ..|+|.|+|.|.|.....
T Consensus       228 ~~d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          228 YERHNSYTCEATHKTSTS  245 (254)
T ss_dssp             HHTCCEEEEEEECTTCSS
T ss_pred             ccCCCeEEEEEEcCCCCC
Confidence            568999999999987753

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.85  E-value=4.6e-21  Score=196.69  Aligned_cols=178  Identities=15%  Similarity=0.133  Sum_probs=128.8

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEE--EEEEccccCCCCeEEEEEE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVC--HLKIHALEVADQAEWKCIA  824 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~A  824 (1075)
                      .+|.|...+. ..+.+|++++|.|.+.+ |.+.+.|+|+|..+........  ......  .|.|.+++.+|+|.|+|.|
T Consensus         8 ~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a   83 (218)
T 1uct_A            8 PMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRL--KFWNETDPEFVIDHMDANKAGRYQCQY   83 (218)
T ss_dssp             CCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEEC--C----CCCEEEECSCCGGGCEEEEEEE
T ss_pred             CCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccC--CCCcceeeEEEEcccccccCEEEEEEE
Confidence            5778877665 47899999999999987 7889999999987653322110  011123  7999999999999999999


Q ss_pred             EeCCceEEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCCeeEEEECCEEcCC-----CCeeEEEECC
Q psy16863        825 TNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKA-----GDIHKIISGE  899 (1075)
Q Consensus       825 ~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~-----~~~~~i~~~~  899 (1075)
                      .|..|....+..+.+.+.....+|.+.......+.+|+.++|.|.+.+.|.+.+.|+|||..+..     +....|.+..
T Consensus        84 ~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~  163 (218)
T 1uct_A           84 RIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGP  163 (218)
T ss_dssp             EETTTEEEECCCEEEEEECSSCCCEEEESSCSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCS
T ss_pred             EcCCCceeecCCEEEEEcCcccCCEEEeCCCCccCCCCCEEEEEeCCCCCCCEEEEEECCCcccccccCCCccCEEEEcc
Confidence            99987555443344433333345665544445678999999999777888899999999987753     2345677788


Q ss_pred             CCceeeEEEEEEEEeCCe-----eEEEEEEEEEe
Q psy16863        900 DGTCCLGIYTCEAHNCMG-----TTSSSAALLGF  928 (1075)
Q Consensus       900 ~~~~d~G~Y~C~a~N~~G-----~~~~~~~l~v~  928 (1075)
                      ....|+|.|+|.|.|..+     ..+..+.|.|.
T Consensus       164 v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  197 (218)
T 1uct_A          164 VDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVT  197 (218)
T ss_dssp             CCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC
T ss_pred             CCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEe
Confidence            888999999999999642     22334555554

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.85  E-value=1.3e-20  Score=186.56  Aligned_cols=165  Identities=15%  Similarity=0.206  Sum_probs=128.9

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCe-EEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPK-VSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT  825 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~-v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~  825 (1075)
                      .+|.+...+....+.+|+++.|.|.+.+.|.+. +.|+|+|..+...           ...|.|.+++.+|+|.|+|.|.
T Consensus         6 ~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~-----------~~~L~i~~~~~~d~G~Y~C~~~   74 (175)
T 1fnl_A            6 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ-----------ASSYFIDAATVNDSGEYRCQTN   74 (175)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS-----------CSEEEESSCCGGGCEEEEEECS
T ss_pred             CCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCC-----------ceEEEEeCCCcccCEEEEEEee
Confidence            577887777777899999999999999988776 8999999988642           2379999999999999999999


Q ss_pred             eCCceEEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCC-eeEEEECCEEcCCC-CeeEEEECCCCce
Q psy16863        826 NDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQP-TLKWFKDGRELKAG-DIHKIISGEDGTC  903 (1075)
Q Consensus       826 N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p-~v~W~k~g~~l~~~-~~~~i~~~~~~~~  903 (1075)
                      |..+.  ..+.|.|..+     +.........+.+|+.++|.|.+.+.|++ .|+|+|||.++... ....|.+......
T Consensus        75 n~~~s--~~~~l~V~~~-----~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~~~~~~L~i~~v~~~  147 (175)
T 1fnl_A           75 LSTLS--DPVQLEVHIG-----WLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLK  147 (175)
T ss_dssp             SSCCC--CCEEEEEECS-----SEEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEEECCCEEESSCCGG
T ss_pred             CCccc--ccEEEEEeCC-----CceeeCCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCCCCCCEEEEcccChh
Confidence            96664  3566666632     22333334457799999999999988765 99999999988532 2345677788889


Q ss_pred             eeEEEEEEEEeCCee-EEEEEEEEEec
Q psy16863        904 CLGIYTCEAHNCMGT-TSSSAALLGFE  929 (1075)
Q Consensus       904 d~G~Y~C~a~N~~G~-~~~~~~l~v~~  929 (1075)
                      |+|.|+|.|.|..|. .+..+.|.|.+
T Consensus       148 d~G~Y~C~a~n~~~~~~s~~~~l~V~~  174 (175)
T 1fnl_A          148 DSGSYFCRGLVGSKNVSSETVNITITQ  174 (175)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             hCeEEEEEEEcCCCCccCccEEEEEeC
Confidence            999999999997764 44566666653

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.84  E-value=1e-20  Score=194.66  Aligned_cols=172  Identities=15%  Similarity=0.255  Sum_probs=132.3

Q ss_pred             cceeeeecCCeEEEEEEEecCC----CCeEEEEE----------------CCEEeec-----CCcEEEEE--eeCcEEEE
Q psy16863        755 LKSCQATVNEEFKFTVQVSISP----EPKVSWFR----------------DDQQVVE-----SDNVKILK--ETLGVCHL  807 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p----~p~v~W~k----------------~g~~i~~-----~~~~~~~~--~~~~~~~L  807 (1075)
                      ...+.+.+|+++.|.|.+.+.|    .+.+.|+|                ++..+..     ..++.+..  ...+...|
T Consensus         7 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L   86 (214)
T 3jz7_A            7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASI   86 (214)
T ss_dssp             EEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCE
T ss_pred             CceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccE
Confidence            3456789999999999999887    46999998                4444432     33444422  11234579


Q ss_pred             EEccccCCCCeEEEEEEEeCCceEEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEE-EccCCCeeEEEEC--C
Q psy16863        808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKV-IGVPQPTLKWFKD--G  884 (1075)
Q Consensus       808 ~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v-~g~p~p~v~W~k~--g  884 (1075)
                      .|.+++.+|+|.|+|.|.|..|....++.|.|..++.+.  ....  ...+.+|+.++|.|.+ .|.|.|.|+|+|+  +
T Consensus        87 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~--~~~~--~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~  162 (214)
T 3jz7_A           87 NVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGT--RCFV--DGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDS  162 (214)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSC--EEEE--ESCCBTTCCEEEEEECSBCCSSCEEEEEECSTT
T ss_pred             EEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCc--eeee--ecceecCCcEEEEecCCCCCCCCEEEEEECCCC
Confidence            999999999999999999999998889999998765432  2211  2236789999999999 8999999999995  4


Q ss_pred             EEcCCC-----CeeEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEecC
Q psy16863        885 RELKAG-----DIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFED  930 (1075)
Q Consensus       885 ~~l~~~-----~~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~  930 (1075)
                      ..+..+     ....|.+......|+|.|+|.|.|.+|..++++.|.|.++
T Consensus       163 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  213 (214)
T 3jz7_A          163 QTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP  213 (214)
T ss_dssp             CCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBCC
T ss_pred             CccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeCC
Confidence            444321     2336777888889999999999999999999999988744

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.84  E-value=1e-20  Score=187.71  Aligned_cols=167  Identities=19%  Similarity=0.213  Sum_probs=128.7

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCC-eEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEP-KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT  825 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p-~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~  825 (1075)
                      .+|.+...+....+.+|+++.|.|.+.+.|.+ .++|+|+|..+...           ...|.|.+++.+|+|.|+|.|.
T Consensus         3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~-----------~~~L~i~~v~~~d~G~Y~C~~~   71 (176)
T 1f2q_A            3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET-----------NSSLNIVNAKFEDSGEYKCQHQ   71 (176)
T ss_dssp             -CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC-----------SSEEEECSCCGGGCEEEEEECT
T ss_pred             CCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCC-----------ceEEEEeccceecCEEEEEEcC
Confidence            47788888888889999999999999998875 69999999988642           2379999999999999999999


Q ss_pred             eCCceEEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEE-ccCCCeeEEEECCEEcCC-CCeeEEEECCCCce
Q psy16863        826 NDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVI-GVPQPTLKWFKDGRELKA-GDIHKIISGEDGTC  903 (1075)
Q Consensus       826 N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~-g~p~p~v~W~k~g~~l~~-~~~~~i~~~~~~~~  903 (1075)
                      |..+..  .+.|.|..+     +.........+.+|+.++|.|.+. +.|.+.|+|+|||..+.. .....|.+......
T Consensus        72 ~~~~s~--~~~l~V~~~-----~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~L~i~~v~~~  144 (176)
T 1f2q_A           72 QVNESE--PVYLEVFSD-----WLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVE  144 (176)
T ss_dssp             TSSCCC--CEEEEEECS-----SEEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCCSSEEEESSCCGG
T ss_pred             Cccccc--cEEEEEeCc-----ceeecCCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeecCCCeEEECCCCcc
Confidence            977654  456666632     233333444577999999999995 566679999999999853 23556777888889


Q ss_pred             eeEEEEEEEEeCCee-EEEEEEEEEecCC
Q psy16863        904 CLGIYTCEAHNCMGT-TSSSAALLGFEDK  931 (1075)
Q Consensus       904 d~G~Y~C~a~N~~G~-~~~~~~l~v~~~~  931 (1075)
                      |+|.|+|.|.|..|. .+..+.|.|..+|
T Consensus       145 d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p  173 (176)
T 1f2q_A          145 DSGTYYCTGKVWQLDYESEPLNITVIKAP  173 (176)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEEECSC
T ss_pred             cCEEEEEEEEeCCcceEecCEEEEEecCC
Confidence            999999999997554 4445777776554

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.84  E-value=1.9e-20  Score=196.76  Aligned_cols=183  Identities=21%  Similarity=0.318  Sum_probs=141.9

Q ss_pred             CCCeeeeec----CceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcE-EEEEcCCEEEEEEcccCCCCceeEEE
Q psy16863        348 DAPAFIRRL----HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIY-RTQHDGNFYFIDLSSVSLFDSGRWTC  422 (1075)
Q Consensus       348 ~~p~~~~~~----~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~-~~~~~g~~~~L~I~~v~~~d~G~Y~C  422 (1075)
                      .+|.|+.++    ....+.+|+++.|.|.+.+.|.+.|.|+|+|..+....+. ..........|.|.+++.+|+|.|+|
T Consensus        10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C   89 (241)
T 3grw_A           10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC   89 (241)
T ss_dssp             -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred             CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEE
Confidence            367776543    4678999999999999999999999999999998654332 11112222358999999999999999


Q ss_pred             EEEeCCCceeeEEEEEeecCCCCCCCeeeeec-ceEEecCCeEEEEEEEECCCCCeEEEEe----CCEeccCCC------
Q psy16863        423 LAENAVGRSHCSCELSVLVPKAYKAPFFTKEL-EAILTEQGTVSLECKVMGIPTPQLIWYK----DNKKIKAGD------  491 (1075)
Q Consensus       423 ~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~-~~~~~~g~~v~l~C~~~g~p~~~v~W~~----~g~~l~~~~------  491 (1075)
                      .|.|..|....+..|.|...+...++.+.... ...+.+|+.+.|.|.+.|.|.+.+.|++    +|..+..+.      
T Consensus        90 ~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~  169 (241)
T 3grw_A           90 VVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTV  169 (241)
T ss_dssp             EEEETTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEE
T ss_pred             EEeecCCceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeee
Confidence            99999998888888888775433222222222 2347789999999999999999999999    888775432      


Q ss_pred             -----------EEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEecc
Q psy16863        492 -----------IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQ  530 (1075)
Q Consensus       492 -----------~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~  530 (1075)
                                 ...|.|..+..+|+|.|+|.|.|..|....++.|.|..+
T Consensus       170 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~  219 (241)
T 3grw_A          170 LKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGP  219 (241)
T ss_dssp             EEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC---
T ss_pred             eeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCC
Confidence                       346999999999999999999999999999998888743

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.84  E-value=5.1e-20  Score=189.78  Aligned_cols=174  Identities=18%  Similarity=0.266  Sum_probs=141.9

Q ss_pred             CCCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEE
Q psy16863        346 VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAE  425 (1075)
Q Consensus       346 ~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~  425 (1075)
                      ....+.|...+.+..+.+|+++.|.|.+.+.|.+.|.|+|+|..+.....         ..|.|.+++.+|+|.|+|.|.
T Consensus        15 ~~~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~---------~~L~i~~v~~~d~G~Y~C~~~   85 (218)
T 3k0w_A           15 VPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNT---------SELIFNAVHVKDAGFYVCRVN   85 (218)
T ss_dssp             ----CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCCS---------SEEEETTCCGGGCEEEEEEEE
T ss_pred             cCCCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCCC---------CEEEEccCChhhCeEeEEEEE
Confidence            34577888888999999999999999999999999999999998865421         358999999999999999999


Q ss_pred             eCCCce-eeEEEEEeecCCCC----------CCCeeeeecc-eEEecCCeEEEEEEEECCCCCeEEEEeCCEeccCCCEE
Q psy16863        426 NAVGRS-HCSCELSVLVPKAY----------KAPFFTKELE-AILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIF  493 (1075)
Q Consensus       426 n~~g~~-~~s~~l~V~~~~~~----------~~p~~~~~~~-~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~~~  493 (1075)
                      |..|.. ...+.|.|...+..          .+|.+...+. ..+.+|+.+.|.|.+.|.|.+.|.|+++|..+..+...
T Consensus        86 n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~~~  165 (218)
T 3k0w_A           86 NNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK  165 (218)
T ss_dssp             CTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCCSS
T ss_pred             cCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCCCC
Confidence            998755 45577777765321          1244544444 34789999999999999999999999999999888888


Q ss_pred             EEEeCCCCCCCcEEEEEEEEeccee-eEEEEEEEEe
Q psy16863        494 ALTANPKDPSSLGTYTCEAVNCMGA-AFSTSRVIAR  528 (1075)
Q Consensus       494 ~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~v~v~  528 (1075)
                      .|.|..+..+|+|.|+|.|.|..|. ....+.|.|.
T Consensus       166 ~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  201 (218)
T 3k0w_A          166 LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID  201 (218)
T ss_dssp             EEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEEC
T ss_pred             EEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEe
Confidence            9999999999999999999998887 4455666665

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.84  E-value=9.8e-21  Score=200.63  Aligned_cols=196  Identities=18%  Similarity=0.290  Sum_probs=125.9

Q ss_pred             cCCCCCEEEEEEEEeCCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecCC-----CcEEEEEECC--
Q psy16863        315 VRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPT-----EIKIHWYRND--  387 (1075)
Q Consensus       315 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p-----~~~v~W~k~g--  387 (1075)
                      ++.+|+|.|+|.|.   |.....+.+.+.    .++.+...+..+.+.+|++++|.|.+.+.|     .+.|.|||++  
T Consensus        11 v~~~dsg~Y~C~a~---g~~~~~~~~~~~----~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g   83 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GYSFTNYWMNWL----RELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPG   83 (254)
T ss_dssp             ----------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTT
T ss_pred             ecCCccEEEEEcCc---hhhhhhhhhhee----eceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCC
Confidence            67899999999998   444444444443    267777778889999999999999998877     4899999843  


Q ss_pred             Eec------------CCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCcee-eEEEEEeecCCCCCCCeeeeec
Q psy16863        388 RKL------------EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSH-CSCELSVLVPKAYKAPFFTKEL  454 (1075)
Q Consensus       388 ~~l------------~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~-~s~~l~V~~~~~~~~p~~~~~~  454 (1075)
                      ..+            ....++.+...+....|.|.+++.+|+|.|+|.|.|..+... ....|.|....  .+|.+....
T Consensus        84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~--~~P~v~~~~  161 (254)
T 2c1o_A           84 QSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRAD--AAPTVSIFP  161 (254)
T ss_dssp             SCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCC--BCCEEEEEC
T ss_pred             CCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCC--CCCeeEeec
Confidence            222            113577777777778899999999999999999999865432 23456665322  234444322


Q ss_pred             -ceEEecCCeEEEEEEEECC-CC-CeEEEEeCCEeccCC-----------C-----EEEEEeCCCCCCCcEEEEEEEEec
Q psy16863        455 -EAILTEQGTVSLECKVMGI-PT-PQLIWYKDNKKIKAG-----------D-----IFALTANPKDPSSLGTYTCEAVNC  515 (1075)
Q Consensus       455 -~~~~~~g~~v~l~C~~~g~-p~-~~v~W~~~g~~l~~~-----------~-----~~~l~i~~~~~~d~G~Y~C~a~n~  515 (1075)
                       .....+|+.++|.|.+.|. |+ +.|+|+|+|.++..+           +     ...|.|..+..+|+|.|+|.|.|.
T Consensus       162 ~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  241 (254)
T 2c1o_A          162 PSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHK  241 (254)
T ss_dssp             CCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECT
T ss_pred             CChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcC
Confidence             2223467899999999884 44 369999999988655           1     236888888889999999999998


Q ss_pred             ceee
Q psy16863        516 MGAA  519 (1075)
Q Consensus       516 ~g~~  519 (1075)
                      ....
T Consensus       242 ~~~~  245 (254)
T 2c1o_A          242 TSTS  245 (254)
T ss_dssp             TCSS
T ss_pred             CCCC
Confidence            7543

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.84  E-value=7e-21  Score=201.39  Aligned_cols=172  Identities=12%  Similarity=0.198  Sum_probs=125.2

Q ss_pred             ccceeeeecCCeEEEEEEEec---CCCCeEEEEECCEEee------------------------------cCCcEEEEEe
Q psy16863        754 GLKSCQATVNEEFKFTVQVSI---SPEPKVSWFRDDQQVV------------------------------ESDNVKILKE  800 (1075)
Q Consensus       754 ~~~~~~~~~g~~~~l~C~v~g---~p~p~v~W~k~g~~i~------------------------------~~~~~~~~~~  800 (1075)
                      +...+.+.+|+++.|.|.+.+   .|.+.|+|+|++....                              ...++.+.. 
T Consensus         8 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-   86 (250)
T 2fbo_J            8 THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN-   86 (250)
T ss_dssp             SCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC-
T ss_pred             CCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc-
Confidence            345677999999999999998   8899999999875421                              011222211 


Q ss_pred             eCcEEEEEEccccCCCCeEEEEEEEeCCceE-----EEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCC
Q psy16863        801 TLGVCHLKIHALEVADQAEWKCIATNDFGQS-----ITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQ  875 (1075)
Q Consensus       801 ~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-----~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~  875 (1075)
                       .+...|.|.+++.+|+|.|+|.|.|..+..     ..++.|.|..++....+.........+.+|+.++|.|.+.|.|.
T Consensus        87 -~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~  165 (250)
T 2fbo_J           87 -LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCAN  165 (250)
T ss_dssp             -TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTT
T ss_pred             -CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCC
Confidence             123479999999999999999999987743     45777777665322222221111233668999999999999999


Q ss_pred             CeeEEEECCEEcCCCC------------------------------eeEEEECCCCceeeEEEEEEEEe---CCeeEEEE
Q psy16863        876 PTLKWFKDGRELKAGD------------------------------IHKIISGEDGTCCLGIYTCEAHN---CMGTTSSS  922 (1075)
Q Consensus       876 p~v~W~k~g~~l~~~~------------------------------~~~i~~~~~~~~d~G~Y~C~a~N---~~G~~~~~  922 (1075)
                      |.|+|+|+|.++....                              ...|.+......|+|.|+|.|.|   ..|....+
T Consensus       166 p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~  245 (250)
T 2fbo_J          166 ANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSS  245 (250)
T ss_dssp             CEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEE
T ss_pred             CeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCcccee
Confidence            9999999998775421                              14677778888999999999999   66666666


Q ss_pred             EEEEE
Q psy16863        923 AALLG  927 (1075)
Q Consensus       923 ~~l~v  927 (1075)
                      +.|.|
T Consensus       246 ~~l~V  250 (250)
T 2fbo_J          246 TILKV  250 (250)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            66543

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.84  E-value=3.6e-20  Score=193.22  Aligned_cols=179  Identities=19%  Similarity=0.322  Sum_probs=143.4

Q ss_pred             CCeeeeec----CceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcE---EEEEcCCEEEEEEcccCCCCceeEE
Q psy16863        349 APAFIRRL----HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIY---RTQHDGNFYFIDLSSVSLFDSGRWT  421 (1075)
Q Consensus       349 ~p~~~~~~----~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~---~~~~~g~~~~L~I~~v~~~d~G~Y~  421 (1075)
                      +|.|...+    ....+.+|+++.|.|.+.+.|.+.|.|+|+|..+....++   .....  ...|.|.+++.+|+|.|+
T Consensus        15 ~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~   92 (231)
T 3ojm_B           15 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ--HWSLIMESVVPSDKGNYT   92 (231)
T ss_dssp             EEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGG--GTEEEECSCCGGGCEEEE
T ss_pred             CCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecC--cceEEEecCCcccCEEEE
Confidence            66676555    6788999999999999999999999999999998755432   22222  235899999999999999


Q ss_pred             EEEEeCCCceeeEEEEEeecCCCCCCCeeee-ecceEEecCCeEEEEEEEECCCCCeEEEEe----CCEeccCCC-----
Q psy16863        422 CLAENAVGRSHCSCELSVLVPKAYKAPFFTK-ELEAILTEQGTVSLECKVMGIPTPQLIWYK----DNKKIKAGD-----  491 (1075)
Q Consensus       422 C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~-~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~----~g~~l~~~~-----  491 (1075)
                      |.|.|..|....+..|.|...+...++.+.. +....+.+|+.+.|.|.+.|.|.+.+.|++    +|..+..+.     
T Consensus        93 C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~  172 (231)
T 3ojm_B           93 CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLK  172 (231)
T ss_dssp             EEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEE
T ss_pred             EEEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEe
Confidence            9999999988888888888765433222222 223347899999999999999999999999    777764332     


Q ss_pred             -----------EEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEec
Q psy16863        492 -----------IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARG  529 (1075)
Q Consensus       492 -----------~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~  529 (1075)
                                 ...|.|..+...|+|.|+|.|.|..|....++.|.|..
T Consensus       173 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  221 (231)
T 3ojm_B          173 VLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLP  221 (231)
T ss_dssp             EEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEec
Confidence                       12589999999999999999999999999999999874

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.84  E-value=5.8e-21  Score=193.61  Aligned_cols=164  Identities=15%  Similarity=0.188  Sum_probs=119.2

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .+|.|...+. ..+.+|++++|.|.+.+.|. .++|+|+|..+....+......  ....|.|.+++.+|+|.|+|.|.|
T Consensus         4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~a~n   79 (198)
T 1ugn_A            4 PKPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELV--KKGQFPIPSITWEHTGRYRCYYGS   79 (198)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHH--TTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccCC--cccEEEECCCCHHHCeEEEEEEEC
Confidence            4777776665 47899999999999998876 7999999987742211100001  123799999999999999999999


Q ss_pred             CC-ce--EEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCCeeEEEECCEEcCCC-----------Ce
Q psy16863        827 DF-GQ--SITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAG-----------DI  892 (1075)
Q Consensus       827 ~~-G~--~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~-----------~~  892 (1075)
                      .. |.  ....+.|.|..+  ..+|.+.......+.+|+.++|.|.+.|. .|.|+|+|||..+...           ..
T Consensus        80 ~~~g~~~~s~~~~l~V~~~--~~~p~i~~~~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~  156 (198)
T 1ugn_A           80 DTAGRSESSDPLELVVTGA--YIKPTLSAQPSPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSSR  156 (198)
T ss_dssp             TTTEECCCCCCEEEEEECS--SCCCEEEEESCSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CCE
T ss_pred             CCCCcccCCccEEEEEccc--ccCCccccCCccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCcce
Confidence            98 63  234566666652  23455544433457899999999999988 7899999999877421           23


Q ss_pred             eEEEECCCCceeeEEEEEEEEeCCe
Q psy16863        893 HKIISGEDGTCCLGIYTCEAHNCMG  917 (1075)
Q Consensus       893 ~~i~~~~~~~~d~G~Y~C~a~N~~G  917 (1075)
                      ..|.+......|+|.|+|.|.|..+
T Consensus       157 ~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          157 AIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             EEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             eEEEecccCcccCeEEEEEEEeCCC
Confidence            6777888888999999999999876

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.83  E-value=1.9e-20  Score=190.59  Aligned_cols=173  Identities=17%  Similarity=0.201  Sum_probs=131.0

Q ss_pred             eccceeeeecCCeEEEEEE-EecCCC-CeEEEEECCEEeec--CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCC
Q psy16863        753 EGLKSCQATVNEEFKFTVQ-VSISPE-PKVSWFRDDQQVVE--SDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDF  828 (1075)
Q Consensus       753 ~~~~~~~~~~g~~~~l~C~-v~g~p~-p~v~W~k~g~~i~~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~  828 (1075)
                      ..+....+.+|+.+.|.|. +.+.|. +.++|+|++..+..  ..+.... ..  ...|.|.+++.+|+|.|+|.|.|..
T Consensus        13 ~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~-~~--~~~L~i~~v~~~d~G~Y~C~~~~~~   89 (201)
T 3s97_C           13 EERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVS-QT--NGNLYIANVEASDKGNYSCFVSSPS   89 (201)
T ss_dssp             SCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEEC-TT--TCCEEESSCCGGGCEEEEEEEEEGG
T ss_pred             CCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEE-cC--CCeEEECcCCcccCeEEEEEEEecC
Confidence            3456788999999999999 888998 99999999988752  2222222 12  2369999999999999999999987


Q ss_pred             ceEEE---EEEEEEEecC--CCCCCeeeeec-ceeecCCCeEEEEEEEEccCCCeeEEEECCEEcCCCC-----eeEEEE
Q psy16863        829 GQSIT---SCFLKLNVPK--HYKKPKFLEEL-KAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGD-----IHKIIS  897 (1075)
Q Consensus       829 G~~~~---s~~l~V~~~~--~~~~p~~~~~~-~~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~-----~~~i~~  897 (1075)
                      +....   ...+.+....  ...+|.+.... ...+.+|+.++|.|.+.|.|.|.|+|+|+|..+..+.     ...|.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~L~i  169 (201)
T 3s97_C           90 ITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKI  169 (201)
T ss_dssp             GTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEEETTTTEEEE
T ss_pred             CCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceeecCCCCEEEE
Confidence            76554   2233332211  11234444333 2347789999999999999999999999999887532     235677


Q ss_pred             CCCCceeeEEEEEEEEeCCeeEEEEEEEEEe
Q psy16863        898 GEDGTCCLGIYTCEAHNCMGTTSSSAALLGF  928 (1075)
Q Consensus       898 ~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~  928 (1075)
                      ......|+|.|+|.|.|..|..+.++.|.|.
T Consensus       170 ~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          170 FNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            7788889999999999999999999988874

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.83  E-value=2e-20  Score=192.07  Aligned_cols=169  Identities=16%  Similarity=0.122  Sum_probs=122.3

Q ss_pred             cceeeeecC--CeEEEEEEEecCCCCeEEEEEC---CEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCc
Q psy16863        755 LKSCQATVN--EEFKFTVQVSISPEPKVSWFRD---DQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFG  829 (1075)
Q Consensus       755 ~~~~~~~~g--~~~~l~C~v~g~p~p~v~W~k~---g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G  829 (1075)
                      +..+.+.+|  +++.|.|.+.+ |.+.++|+|+   |..+..+.++...  ..+  .|.|.+++.+|+|.|+|.|.|..+
T Consensus        14 p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~--~~~--~l~I~~v~~~D~G~Y~C~a~n~~~   88 (213)
T 2x1w_L           14 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWD--SKK--GFTIPSYMISYAGMVFCEAKINDE   88 (213)
T ss_dssp             CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEE--TTT--EEEEEGGGTTTCSEEEEEEC----
T ss_pred             ceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCccccc--CCc--cEEEccCChhcCceEEEEEEECCe
Confidence            467789999  99999999986 8899999884   7777665544432  222  599999999999999999999644


Q ss_pred             eEEEE-EEEEEEecCCCCCCee-eeecce-eecCCCeEEEEEEEEccCC--CeeEEEECCEEcCCC--------------
Q psy16863        830 QSITS-CFLKLNVPKHYKKPKF-LEELKA-VLSEGGAVNLECKVIGVPQ--PTLKWFKDGRELKAG--------------  890 (1075)
Q Consensus       830 ~~~~s-~~l~V~~~~~~~~p~~-~~~~~~-~~~~g~~~~L~C~v~g~p~--p~v~W~k~g~~l~~~--------------  890 (1075)
                      ...+. +.|.|..   ..+|.+ ...... .+.+|+.++|.|.+.|.|.  +.|+|+|+|..+...              
T Consensus        89 ~~~s~~~~l~v~~---~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~  165 (213)
T 2x1w_L           89 SYQSIMYIVVVVG---YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSE  165 (213)
T ss_dssp             CEECCCEEEEECB---CCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCS
T ss_pred             eEEEEEEEEEEeC---CcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCcc
Confidence            43322 4555532   122333 233333 5789999999999998664  479999998764321              


Q ss_pred             ---CeeEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEecCC
Q psy16863        891 ---DIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDK  931 (1075)
Q Consensus       891 ---~~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~  931 (1075)
                         ....|.+......|+|.|+|.|.|..|..++++.|.|.++|
T Consensus       166 ~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p  209 (213)
T 2x1w_L          166 MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP  209 (213)
T ss_dssp             CEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC--
T ss_pred             ceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccc
Confidence               02247777888899999999999999999999999998654

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.83  E-value=1.9e-19  Score=182.34  Aligned_cols=164  Identities=13%  Similarity=0.171  Sum_probs=120.2

Q ss_pred             eeecCCeEEEEEEEecCCCCeEEEEECC-EEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEE
Q psy16863        759 QATVNEEFKFTVQVSISPEPKVSWFRDD-QQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFL  837 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p~p~v~W~k~g-~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l  837 (1075)
                      .+.+|+++.|.|.+.|.|.|.|+|+|+. .++.  .+.  . .......|.|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus        12 ~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~--~~~--~-~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l   86 (202)
T 1vca_A           12 LAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN--GKV--T-NEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV   86 (202)
T ss_dssp             EEETTSCEEEEEEEESCSSCEEEEEETTCCCCS--SEE--E-EETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEE
T ss_pred             EEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc--ceE--E-EcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEE
Confidence            3559999999999999999999999943 2221  111  1 12234579999999999999999999999988888889


Q ss_pred             EEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCC---CeeEEEECCEEcCCC-----------C--eeEEEECCCC
Q psy16863        838 KLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQ---PTLKWFKDGRELKAG-----------D--IHKIISGEDG  901 (1075)
Q Consensus       838 ~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~---p~v~W~k~g~~l~~~-----------~--~~~i~~~~~~  901 (1075)
                      .|..+|..  +.+...  ..+.+|+.++|.|.+.|.|+   ++|+|+|||.+|...           .  ...+.+....
T Consensus        87 ~V~~~p~~--~~~~~~--~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~  162 (202)
T 1vca_A           87 EIYSFPKD--PEIHLS--GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVI  162 (202)
T ss_dssp             EEEBCCSC--CEEEES--SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCG
T ss_pred             EEEeCCCC--CEeCCc--eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEeee
Confidence            99876532  332222  34779999999999998754   379999999987421           1  1223345555


Q ss_pred             ceeeEEEEEEEEeCCee-------EEEEEEEEEecCC
Q psy16863        902 TCCLGIYTCEAHNCMGT-------TSSSAALLGFEDK  931 (1075)
Q Consensus       902 ~~d~G~Y~C~a~N~~G~-------~~~~~~l~v~~~~  931 (1075)
                      ..|.|.|+|+|.|.+|.       .+++..|.|.-+|
T Consensus       163 ~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P  199 (202)
T 1vca_A          163 EDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISP  199 (202)
T ss_dssp             GGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC
T ss_pred             ccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCC
Confidence            56789999999999986       3556667666443

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.83  E-value=1.7e-19  Score=180.37  Aligned_cols=158  Identities=16%  Similarity=0.315  Sum_probs=129.0

Q ss_pred             eeecCCeEEEEEEEecCCCC--eEEEEECCEEcCCCC------eEEEeecCCCceEEEEEEecCceEEEEEEEEEEeccc
Q psy16863        661 VMTDDGLVSFECKVVGFPTP--TLQWFKDNEELKPGD------VYQLTGTSSLGSYCCVAKNVMGKAESSTQLTIEDIRN  732 (1075)
Q Consensus       661 ~~~~g~~~~l~C~v~g~p~p--~v~W~k~g~~l~~~~------~~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~  732 (1075)
                      .+.+|+.+.|.|.+.+.|.|  .+.|+|+|..+..+.      .+.+...+|+|.|+|.|.|...   ..+.|.|.    
T Consensus         9 ~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~~~~~l~i~~~~d~G~Y~C~~~n~~~---~~~~l~V~----   81 (184)
T 3b5h_A            9 VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPM---GTANIQLH----   81 (184)
T ss_dssp             EEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCSEEEEEECGGGCCEEEEEEEESTTS---CEEEEEEC----
T ss_pred             EEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccCCcEEEEEechhhCeEEEEEEECCcC---cEEEEEEe----
Confidence            46689999999999988777  899999999987653      4555556899999999998332   45667775    


Q ss_pred             cCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecCC-CCeEEEEE---CCE-Eeec--CCcEEEEEeeCcEE
Q psy16863        733 HLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISP-EPKVSWFR---DDQ-QVVE--SDNVKILKETLGVC  805 (1075)
Q Consensus       733 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p-~p~v~W~k---~g~-~i~~--~~~~~~~~~~~~~~  805 (1075)
                                    .+|.+...+....+..|+.+.|.|.+.|.| .|.++|+|   ++. .+..  ..++.+... .+..
T Consensus        82 --------------~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  146 (184)
T 3b5h_A           82 --------------GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS-QGRS  146 (184)
T ss_dssp             --------------CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEE-TTEE
T ss_pred             --------------cCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEec-CCee
Confidence                          578888777777899999999999999999 79999999   444 4432  256776643 4567


Q ss_pred             EEEEcccc-CCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy16863        806 HLKIHALE-VADQAEWKCIATNDFGQSITSCFLKLN  840 (1075)
Q Consensus       806 ~L~I~~~~-~~D~G~Y~C~A~N~~G~~~~s~~l~V~  840 (1075)
                      .|.|.+++ .+|+|.|+|.|.|.+|....++.|.|.
T Consensus       147 ~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          147 ELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             EEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEeeccccccCceEEEEEEeCCCcceEEEEEEEe
Confidence            89999999 999999999999999999888888775

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.83  E-value=2.6e-20  Score=192.09  Aligned_cols=177  Identities=27%  Similarity=0.471  Sum_probs=138.4

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCC--cEEEE-EcCCE-EEEEEcccCCCCceeEEEE
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENK--IYRTQ-HDGNF-YFIDLSSVSLFDSGRWTCL  423 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~--~~~~~-~~g~~-~~L~I~~v~~~d~G~Y~C~  423 (1075)
                      .+|.|...+.+..+.+|+++.|.|.+.+.|.+.|.|+|+|..+....  ...+. .++.. ..|.|.+++.+|+|.|+|.
T Consensus         8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~   87 (217)
T 2vr9_A            8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCV   87 (217)
T ss_dssp             CCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEE
T ss_pred             CCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEE
Confidence            68999999999999999999999999999999999999999987642  11222 23332 2347889999999999999


Q ss_pred             EEeCCCce-eeEEEEEeecCCCCCCCeeeee-cceEEecCCeEEEEEEE-ECCCCCeEEEEeCCEeccC--------CCE
Q psy16863        424 AENAVGRS-HCSCELSVLVPKAYKAPFFTKE-LEAILTEQGTVSLECKV-MGIPTPQLIWYKDNKKIKA--------GDI  492 (1075)
Q Consensus       424 a~n~~g~~-~~s~~l~V~~~~~~~~p~~~~~-~~~~~~~g~~v~l~C~~-~g~p~~~v~W~~~g~~l~~--------~~~  492 (1075)
                      |.|..|.. .....|.|.+.+.    .+... ....+.+|+.+.|.|.+ .|.|.+.++|+|+|..+..        ..+
T Consensus        88 ~~n~~g~~~~~~~~l~v~~~~~----~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~  163 (217)
T 2vr9_A           88 AKNRVGQAVSRHASLQIAVLRD----DFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSR  163 (217)
T ss_dssp             EEETTEEEECCCEEEEECEECC----SCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCS
T ss_pred             EecCCCccccccceEEEEEeCC----CcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCc
Confidence            99998866 3356666665321    22222 23347899999999998 8899999999999999872        222


Q ss_pred             ------EEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEe
Q psy16863        493 ------FALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIAR  528 (1075)
Q Consensus       493 ------~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~  528 (1075)
                            ..|.|..+..+|+|.|+|.|.|..|...++..+.+.
T Consensus       164 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~  205 (217)
T 2vr9_A          164 VRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV  205 (217)
T ss_dssp             EEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEE
Confidence                  168999999999999999999999998877666554

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.83  E-value=5.2e-20  Score=186.85  Aligned_cols=165  Identities=12%  Similarity=0.162  Sum_probs=131.0

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcE-EEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEe
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIK-IHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~-v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      ..|.+...+....+.+|++++|.|.+.+.|.+. |.|+|+|..+....          ..|.|.+++.+|+|.|+|.|.|
T Consensus         6 p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~----------~~L~i~~v~~~D~G~Y~C~a~n   75 (204)
T 3sgj_C            6 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA----------SSYFIDAATVDDSGEYRCQTQL   75 (204)
T ss_dssp             CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS----------SEEEESSCCGGGCEEEEEEETT
T ss_pred             CCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc----------cEEEEecccccCCEEEEEEeCC
Confidence            456677777778999999999999998887664 99999999887543          3589999999999999999987


Q ss_pred             CCCceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECC-CCCeEEEEeCCEeccCC-CEEEEEeCCCCCCC
Q psy16863        427 AVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGI-PTPQLIWYKDNKKIKAG-DIFALTANPKDPSS  504 (1075)
Q Consensus       427 ~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~-p~~~v~W~~~g~~l~~~-~~~~l~i~~~~~~d  504 (1075)
                      .  ..+..+.|.|..++     .+...+...+.+|+.+.|.|.+.+. |.+.|+|+|||..+... ....|.|..+..+|
T Consensus        76 ~--~~s~~~~l~V~~~p-----~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~L~i~~v~~~D  148 (204)
T 3sgj_C           76 S--TLSDPVQLEVHIGW-----LLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKD  148 (204)
T ss_dssp             S--BCCCCEEEEEECSS-----EEEECSCSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEEECCCEEESSCCGGG
T ss_pred             C--cccccEEEEEecCc-----eEecCCceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecccCCceEEECcCCccc
Confidence            4  44446677776543     3444444568899999999999765 55799999999988532 23478999999999


Q ss_pred             cEEEEEEEEe-cceeeEEEEEEEEec
Q psy16863        505 LGTYTCEAVN-CMGAAFSTSRVIARG  529 (1075)
Q Consensus       505 ~G~Y~C~a~n-~~g~~~~~~~v~v~~  529 (1075)
                      +|.|+|.|.| ..+..+....|.|.+
T Consensus       149 ~G~Y~C~a~n~~~~~~s~~~~l~V~~  174 (204)
T 3sgj_C          149 SGSYFCRGLVGSKNVSSETVQITITQ  174 (204)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CEEEEEEEEeCCCceecCcEEEEEeC
Confidence            9999999999 555566667787774

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.83  E-value=7.4e-20  Score=188.05  Aligned_cols=170  Identities=14%  Similarity=0.170  Sum_probs=124.1

Q ss_pred             EEeccceeeeecCCeEEEEEEEecCCCCeEEEEEC--CEEee------------cCCcEEEEEeeCcEEEEEEccccCCC
Q psy16863        751 FIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQQVV------------ESDNVKILKETLGVCHLKIHALEVAD  816 (1075)
Q Consensus       751 ~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~~i~------------~~~~~~~~~~~~~~~~L~I~~~~~~D  816 (1075)
                      +...+ ...+.+|+++.|.|.+.+.|.+.+.|+|.  +....            ...++.+.. ..+...|.|.+++.+|
T Consensus         4 v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D   81 (213)
T 3mj8_L            4 LTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSN-SGNMATLTISKAQAGD   81 (213)
T ss_dssp             BBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-ETTEEEEEESSCCGGG
T ss_pred             EEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEe-cCCEEEEEECCCChhh
Confidence            34444 66789999999999999999999999992  22111            234666654 4567899999999999


Q ss_pred             CeEEEEEEEeCCc---eEEEEEEEEEEecCCCCCCeeeeec-ceeecCCCeEEEEEEEEccC-C-CeeEEEECCEEcCCC
Q psy16863        817 QAEWKCIATNDFG---QSITSCFLKLNVPKHYKKPKFLEEL-KAVLSEGGAVNLECKVIGVP-Q-PTLKWFKDGRELKAG  890 (1075)
Q Consensus       817 ~G~Y~C~A~N~~G---~~~~s~~l~V~~~~~~~~p~~~~~~-~~~~~~g~~~~L~C~v~g~p-~-p~v~W~k~g~~l~~~  890 (1075)
                      +|.|+|.|.|..|   .......|.|...+. .+|.+.... ...+.+|+.++|.|.+.|.+ + +.|+|+|||.+|..+
T Consensus        82 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~-~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~  160 (213)
T 3mj8_L           82 EADYYCQSWDGTNSAWVFGSGTKVTVLGQPN-AAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQG  160 (213)
T ss_dssp             CEEEEEEEEETTTTEEEEBCCEEEEEECSCC-BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTT
T ss_pred             CEEEEEEeccCCcceeEEcCceEEEEeCCCC-CCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCC
Confidence            9999999999988   334456777774322 345554333 22344899999999999863 3 489999999999753


Q ss_pred             ----------Cee----EEEECCCCceeeEEEEEEEEeCCeeEEEEE
Q psy16863        891 ----------DIH----KIISGEDGTCCLGIYTCEAHNCMGTTSSSA  923 (1075)
Q Consensus       891 ----------~~~----~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~  923 (1075)
                                ..+    .|.+......|+|.|+|.|.|..|....++
T Consensus       161 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  207 (213)
T 3mj8_L          161 VKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSL  207 (213)
T ss_dssp             EEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEE
T ss_pred             cccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeee
Confidence                      112    244455555689999999999998876654

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.83  E-value=4.9e-20  Score=186.34  Aligned_cols=165  Identities=13%  Similarity=0.118  Sum_probs=116.3

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      .+|.|...+. ..+.+|++++|.|.+.+.|. .+.|+|+|..+..... ..........|.|.+++.+|+|.|+|.|.|.
T Consensus         4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (196)
T 2d3v_A            4 SKATLWAEPG-SVISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQ-NPLEPKNKARFSIPSMTEHHAGRYRCYYYSP   80 (196)
T ss_dssp             CBCEEEEESC-SEEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEE-CCCSSTTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeCCC-CcccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccc-cccCCccccEEEeccCChhHCeEEEEEEeCC
Confidence            4677776665 48899999999999988765 9999999987753211 0112344567999999999999999999998


Q ss_pred             CCcee--eEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccC-----------CCEEE
Q psy16863        428 VGRSH--CSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA-----------GDIFA  494 (1075)
Q Consensus       428 ~g~~~--~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~-----------~~~~~  494 (1075)
                      .|...  ..+.|.|...  ..+|.+...+...+.+|+.++|.|.+.+.| +.+.|+|+|..+..           .....
T Consensus        81 ~g~~~~s~~~~l~V~~~--~~~p~i~~~~~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~  157 (196)
T 2d3v_A           81 AGWSEPSDPLELVVTGF--YNKPTLSALPSPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQAL  157 (196)
T ss_dssp             TEECBCCCCEEEEEECS--SCCCEEEC-----------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCEEEE
T ss_pred             CCcCCcCccEEEEecCC--CCCCeEEccCCccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCceeE
Confidence            77543  3456666553  234565554444588999999999999988 89999999988732           12368


Q ss_pred             EEeCCCCCCCcEEEEEEEEeccee
Q psy16863        495 LTANPKDPSSLGTYTCEAVNCMGA  518 (1075)
Q Consensus       495 l~i~~~~~~d~G~Y~C~a~n~~g~  518 (1075)
                      |.|.++..+|+|.|+|.|.|..+.
T Consensus       158 L~I~~v~~~D~G~Y~C~a~n~~~~  181 (196)
T 2d3v_A          158 FPVGPVTPSHRWMLRCYGSRRHIL  181 (196)
T ss_dssp             EECCCCBTTBCEEEEEEEEETTEE
T ss_pred             EEeeecCcccCeeEEEEEEccCCC
Confidence            999999999999999999997653

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.83  E-value=5.1e-20  Score=186.29  Aligned_cols=164  Identities=15%  Similarity=0.210  Sum_probs=126.7

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      .+|.+...+.. .+.+|++++|.|.+.+ +.+.+.|+|+|..+..... .....+....|.|.+++.+|+|.|+|.|.|.
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (196)
T 3p2t_A            4 PKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQ-NPLEPKNKARFSIPSMTEDYAGRYRCYYRSP   80 (196)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEE-CCCSSSSEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCccccc-ccccCCceEEEEeccCCcccCceEEEEEeCC
Confidence            46777766666 8999999999999987 6789999999987754211 1112245567999999999999999999999


Q ss_pred             CCce--eeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccCC----------CEEEE
Q psy16863        428 VGRS--HCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAG----------DIFAL  495 (1075)
Q Consensus       428 ~g~~--~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~----------~~~~l  495 (1075)
                      .|..  +....|.|...  ..+|.+...+...+.+|+.++|.|.+.+ +++.+.|+|+|..+...          ....|
T Consensus        81 ~g~~~~s~~~~l~V~~~--~~~p~~~~~~~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L  157 (196)
T 3p2t_A           81 VGWSQPSDPLELVMTGA--YSKPTLSALPSPLVTSGKSVTLLCQSRS-PMDTFLLCKERAAHPLLCLRSEHGAQQHQAEF  157 (196)
T ss_dssp             TEEBCCCCCEEEEEECS--SCCCEEEEESCSEECTTCCEEEEEEEEE-EEEEEEEEETTCCCGGGSEEEEEEEEEEEEEE
T ss_pred             CcccCCCccEEEEecCC--CCCCEEEeCCcceecCCCeEEEEEecCC-CCCEEEEEeCCCcccceeecccccccCcceEE
Confidence            8843  34455555533  3455666655556889999999999987 45689999999876432          23469


Q ss_pred             EeCCCCCCCcEEEEEEEEecce
Q psy16863        496 TANPKDPSSLGTYTCEAVNCMG  517 (1075)
Q Consensus       496 ~i~~~~~~d~G~Y~C~a~n~~g  517 (1075)
                      .|..+..+|+|.|+|.|.|..+
T Consensus       158 ~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          158 PMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EECSCCGGGCEEEEEEEECGGG
T ss_pred             EeCCCcccCCCeEEEEEEcCCC
Confidence            9999999999999999999876

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.83  E-value=9.1e-21  Score=189.38  Aligned_cols=155  Identities=15%  Similarity=0.125  Sum_probs=116.2

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .+|.|...+.. .+.+|++++|.|.+.+ |.+.+.|+|+|...         ...  ...|.|.+++.+|+|.|+|.|.|
T Consensus         7 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~---------~~~--~~~L~i~~v~~~D~G~Y~C~a~n   73 (184)
T 2gi7_A            7 PKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR---------YQD--QAVLFIPAMKRSLAGRYRCSYQN   73 (184)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCC---------EES--SSEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCccc---------cCc--ccEEEECcCChhhCceEEEEEEc
Confidence            57777766654 7899999999999987 88899999998751         111  23799999999999999999999


Q ss_pred             CCceEEE--EEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCCeeEEEECCEEcCCCC-----eeEEEECC
Q psy16863        827 DFGQSIT--SCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGD-----IHKIISGE  899 (1075)
Q Consensus       827 ~~G~~~~--s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~-----~~~i~~~~  899 (1075)
                      ..|....  .+.|.|..  ...+|.+.......+.+|+.++|.|.+.+. ++.++|+|||..+....     ...|.+..
T Consensus        74 ~~g~~~~s~~~~l~V~~--~~~~p~i~~~p~~~v~~G~~v~l~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~L~i~~  150 (184)
T 2gi7_A           74 GSLWSLPSDQLELVATG--VFAKPSLSAQPGPAVSSGGDVTLQCQTRYG-FDQFALYKEGDPAPYKNPERWYRASFPIIT  150 (184)
T ss_dssp             TTEEBCCCCCEEEEEES--SSCCCEEEEECCCSSCCTTCEEEEEECSSC-CCEEEEEECCCCTTSCCCCEEEEESSSEEE
T ss_pred             CCCccCCCCCEEEEecC--cCCCCEEEeCCCceecCCCcEEEEEEcCCC-CcEEEEEECCCcCcceecCCCceEEEEEcc
Confidence            8875333  34555543  334566655444457799999999998665 47999999999876422     22233444


Q ss_pred             CCceeeEEEEEEEEeCCe
Q psy16863        900 DGTCCLGIYTCEAHNCMG  917 (1075)
Q Consensus       900 ~~~~d~G~Y~C~a~N~~G  917 (1075)
                      ....|+|.|+|.|.|..+
T Consensus       151 v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          151 VTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             ETTCCSEEEEEEEECTTS
T ss_pred             CCccCCeEEEEEEEeCCC
Confidence            566789999999999865

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.82  E-value=5.1e-20  Score=189.19  Aligned_cols=178  Identities=23%  Similarity=0.401  Sum_probs=139.8

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCC-----cEEEEEcCCEEE--EEEcccCCCCceeE
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENK-----IYRTQHDGNFYF--IDLSSVSLFDSGRW  420 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~-----~~~~~~~g~~~~--L~I~~v~~~d~G~Y  420 (1075)
                      .||.|...+.+..+.+|+++.|.|.+.+.|.+.+.|+|+|..+....     ......++....  |.|.+++.+|+|.|
T Consensus         8 ~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   87 (212)
T 2v9r_A            8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVY   87 (212)
T ss_dssp             EEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEE
T ss_pred             CCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEE
Confidence            47888888889999999999999999999999999999999886432     222334444432  44567899999999


Q ss_pred             EEEEEeCCCce-eeEEEEEeecCCCCCCCeeee-ecceEEecCCeEEEEEEE-ECCCCCeEEEEeCCEeccCCCE-----
Q psy16863        421 TCLAENAVGRS-HCSCELSVLVPKAYKAPFFTK-ELEAILTEQGTVSLECKV-MGIPTPQLIWYKDNKKIKAGDI-----  492 (1075)
Q Consensus       421 ~C~a~n~~g~~-~~s~~l~V~~~~~~~~p~~~~-~~~~~~~~g~~v~l~C~~-~g~p~~~v~W~~~g~~l~~~~~-----  492 (1075)
                      +|.|.|..|.. ..+..|.|...+.    .+.. +....+.+|+.+.|.|.+ .|.|.+.++|+++|..+.....     
T Consensus        88 ~C~~~n~~g~~~~~~~~l~V~~~~~----~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~  163 (212)
T 2v9r_A           88 VCVARNYLGEAVSHDASLEVAILRD----DFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIR  163 (212)
T ss_dssp             EEEEEETTEEEECCCEEEEECEECS----SCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEE
T ss_pred             EEEEECCCCceeecceEEEEEeccc----cceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEcc
Confidence            99999998865 4466777765432    2222 223347899999999998 8899999999999999875432     


Q ss_pred             -EEEEeCCCCCCCcEEEEEEEEecceeeEEE-EEEEEec
Q psy16863        493 -FALTANPKDPSSLGTYTCEAVNCMGAAFST-SRVIARG  529 (1075)
Q Consensus       493 -~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~v~v~~  529 (1075)
                       ..|.|..+..+|+|.|+|.|.|..|...+. +.|.|..
T Consensus       164 ~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~  202 (212)
T 2v9r_A          164 GGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLE  202 (212)
T ss_dssp             TTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEe
Confidence             268899999999999999999999987664 7888874

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.82  E-value=1.4e-19  Score=187.80  Aligned_cols=169  Identities=17%  Similarity=0.254  Sum_probs=113.6

Q ss_pred             ceeeeecCCeEEEEEEEecCCCC---eEEEEECCEE-----------eec------CCcEEEEEe--eCcEEEEEEcccc
Q psy16863        756 KSCQATVNEEFKFTVQVSISPEP---KVSWFRDDQQ-----------VVE------SDNVKILKE--TLGVCHLKIHALE  813 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g~p~p---~v~W~k~g~~-----------i~~------~~~~~~~~~--~~~~~~L~I~~~~  813 (1075)
                      ..+.+.+|++++|.|.+.+.|.+   .|+|+|++..           +..      ..++.....  ..+...|.|.+++
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   91 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT   91 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence            44678999999999999987655   7999997632           111      112222211  2346789999999


Q ss_pred             CCCCeEEEEEEEeCCceEEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEcc-CCCeeEEEECCE-EcCCCC
Q psy16863        814 VADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGV-PQPTLKWFKDGR-ELKAGD  891 (1075)
Q Consensus       814 ~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~-p~p~v~W~k~g~-~l~~~~  891 (1075)
                      .+|+|.|+|.|.|..|.......+  ..++....+.    ....+.+|+.+.|.|.+.|. |.|+|+|+|++. .+....
T Consensus        92 ~~D~G~Y~C~a~n~~~~~~~~v~~--~~~~~~~~~~----~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~  165 (226)
T 4f80_A           92 ASDSGKYLCYFQDGDFYEKALVEL--KVAALGSDLH----VDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVE  165 (226)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEE--EEEBCCCCCE----EEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEE
T ss_pred             hHHCeeEEEEEECCCcEEEEEEEE--eeccceeccc----ceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCc
Confidence            999999999999998887655444  4433222222    12235689999999999984 999999999654 333211


Q ss_pred             ---------eeE-EEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEecC
Q psy16863        892 ---------IHK-IISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFED  930 (1075)
Q Consensus       892 ---------~~~-i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~  930 (1075)
                               .+. +.+......|+|.|+|.|+|.+|..+.++.|.|.++
T Consensus       166 ~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~ep  214 (226)
T 4f80_A          166 APVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP  214 (226)
T ss_dssp             CCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCTT
T ss_pred             eEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECCC
Confidence                     111 111122346899999999999999999998887543

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.82  E-value=8.9e-20  Score=187.34  Aligned_cols=171  Identities=23%  Similarity=0.320  Sum_probs=132.3

Q ss_pred             CeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEec------------CCCCcEEEEEcCCEEEEEEcccCCCCc
Q psy16863        350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKL------------EENKIYRTQHDGNFYFIDLSSVSLFDS  417 (1075)
Q Consensus       350 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l------------~~~~~~~~~~~g~~~~L~I~~v~~~d~  417 (1075)
                      +.|...+.+..+.+|+++.|.|.+.+.|.+.|.|+|++..+            ....++.+..    ..|.|.+++.+|+
T Consensus         2 ~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~v~~~D~   77 (212)
T 1f97_A            2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS----SGITFSSVTRKDN   77 (212)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET----TEEEESCCCGGGC
T ss_pred             ceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec----eeEEEcccCcccC
Confidence            45566677889999999999999999899999999988653            1234443332    4689999999999


Q ss_pred             eeEEEEEEeCCC--ceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEE-EECCCCCeEEEEeCCE-eccCCC--
Q psy16863        418 GRWTCLAENAVG--RSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECK-VMGIPTPQLIWYKDNK-KIKAGD--  491 (1075)
Q Consensus       418 G~Y~C~a~n~~g--~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~-~~g~p~~~v~W~~~g~-~l~~~~--  491 (1075)
                      |.|+|.|.|..|  ....++.|.|..+|..  +..  .....+.+|+.+.|.|. +.+.|.+.+.|++++. .+....  
T Consensus        78 G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~--~~~--~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~  153 (212)
T 1f97_A           78 GEYTCMVSEEGGQNYGEVSIHLTVLVPPSK--PTI--SVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKK  153 (212)
T ss_dssp             EEEEEEEEETTSSSEEEEEEEEEEEBCCCC--CEE--ECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----
T ss_pred             eEEEEEEEccCCCcccEEEEEEEEEcCCCC--ccc--CCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccc
Confidence            999999999977  4456677777766542  122  22235789999999999 7899999999999999 776422  


Q ss_pred             --------------EEEEEeCCCCCCCcEEEEEEEEecceee--EEEEEEEEe
Q psy16863        492 --------------IFALTANPKDPSSLGTYTCEAVNCMGAA--FSTSRVIAR  528 (1075)
Q Consensus       492 --------------~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~v~v~  528 (1075)
                                    ...|.|..+..+|+|.|+|.|.|..|..  .....|.|.
T Consensus       154 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~  206 (212)
T 1f97_A          154 TRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV  206 (212)
T ss_dssp             CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred             cccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEE
Confidence                          2368899999999999999999999988  444555554

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.82  E-value=2e-19  Score=186.20  Aligned_cols=171  Identities=16%  Similarity=0.265  Sum_probs=123.5

Q ss_pred             ceeeeecCCeEEEEEEEecCCC-----CeEEEEECCEEeec---------------CCcEEEEEe--eCcEEEEEEcccc
Q psy16863        756 KSCQATVNEEFKFTVQVSISPE-----PKVSWFRDDQQVVE---------------SDNVKILKE--TLGVCHLKIHALE  813 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g~p~-----p~v~W~k~g~~i~~---------------~~~~~~~~~--~~~~~~L~I~~~~  813 (1075)
                      ..+.+..|+++.|.|.+.+.|.     +.+.|+|++..+..               ..+..+...  ..+...|.|.+++
T Consensus         9 ~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   88 (222)
T 3sbw_C            9 DLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVK   88 (222)
T ss_dssp             SEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCC
T ss_pred             ccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCcc
Confidence            4456889999999999988774     48999998754421               133333221  2245789999999


Q ss_pred             CCCCeEEEEEEEeCCceEEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCCeeEEEEC-CEEcCCCCe
Q psy16863        814 VADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKD-GRELKAGDI  892 (1075)
Q Consensus       814 ~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k~-g~~l~~~~~  892 (1075)
                      .+|+|.|+|.|.| .|.....+.|.|..++..  |...  ....+.+|+.++|.|.+.|.|.|.|+|+|+ |..+.....
T Consensus        89 ~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~--~~~~--~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~  163 (222)
T 3sbw_C           89 LQDAGVYRCMISY-GGADYKRITVKVNAPYNK--INQR--ILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTT  163 (222)
T ss_dssp             GGGCEEEEEEEES-SSEEEEEEEEEEEBCCCC--CEEE--EEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEE
T ss_pred             cccCeEEEEEEEe-CCCceeEEEEEEECCCCC--CCce--eeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCccc
Confidence            9999999999999 677777888888866432  2211  112466899999999999999999999999 666543221


Q ss_pred             eEEEE-----------CCCCceeeEEEEEEEEeCCeeEEEEEEEEEecCC
Q psy16863        893 HKIIS-----------GEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDK  931 (1075)
Q Consensus       893 ~~i~~-----------~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~  931 (1075)
                      ..+..           ......|.|.|+|.|.|.+|....++.|.|.++|
T Consensus       164 ~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p  213 (222)
T 3sbw_C          164 TTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELP  213 (222)
T ss_dssp             EEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC-
T ss_pred             eEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCc
Confidence            11100           0112356899999999999999999999886544

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.82  E-value=1.7e-20  Score=187.73  Aligned_cols=161  Identities=12%  Similarity=0.116  Sum_probs=124.2

Q ss_pred             eeeecCCeEEEEEEEecCCCCeEEEEECCEE--eec------------CCcEEEEEe--eCcEEEEEEccccCCCCeEEE
Q psy16863        758 CQATVNEEFKFTVQVSISPEPKVSWFRDDQQ--VVE------------SDNVKILKE--TLGVCHLKIHALEVADQAEWK  821 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~--i~~------------~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~  821 (1075)
                      +.+.+|+++.|.|.+.+.|.+.+.|+|++..  +..            ..++.+...  ..+...|.|.+++.+|+|.|+
T Consensus         5 v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~   84 (184)
T 2ny1_B            5 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   84 (184)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEEE
Confidence            4688999999999999999999999999863  221            112222111  223456999999999999999


Q ss_pred             EEEEeCCceEEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCCeeEEEECCEEcCCCCeeEEEECCCC
Q psy16863        822 CIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDG  901 (1075)
Q Consensus       822 C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~~~i~~~~~~  901 (1075)
                      |.|.|..|    .+.|.|....        ......+.+|+.++|.|.+.+.|.|.++|+|+|..+.. ....|.+....
T Consensus        85 C~~~~~~~----~~~l~V~~~~--------~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~L~i~~v~  151 (184)
T 2ny1_B           85 CEVEDQKE----EVQLLVFGLT--------ANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ-GGKTLSVSQLE  151 (184)
T ss_dssp             EEETTEEE----EEEEEEEEEE--------ESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEEE-ESSEEEESSCC
T ss_pred             EEEEcCCC----cEEEEEEEec--------CCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcccc-CceEEEEecCC
Confidence            99998755    3455555321        11122467899999999999999999999999876643 34567778888


Q ss_pred             ceeeEEEEEEEEeCCeeEEEEEEEEEecCC
Q psy16863        902 TCCLGIYTCEAHNCMGTTSSSAALLGFEDK  931 (1075)
Q Consensus       902 ~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~  931 (1075)
                      ..|+|.|+|.|.|..|..+.++.|.|...|
T Consensus       152 ~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p  181 (184)
T 2ny1_B          152 LQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ  181 (184)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             cCCCeEEEEEEEECCceEEEEEEEEEEecC
Confidence            899999999999999999999999987654

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.82  E-value=2.1e-19  Score=179.78  Aligned_cols=155  Identities=16%  Similarity=0.255  Sum_probs=121.0

Q ss_pred             eeeecCCeEEEEEEEecCCCC--eEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEE
Q psy16863        758 CQATVNEEFKFTVQVSISPEP--KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSC  835 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p~p--~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~  835 (1075)
                      ..+.+|+++.|.|.+.+.|.|  .+.|+|+|..+..+....      ....|.|.  +.+|+|.|+|.|.|...   .++
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~------~~~~l~i~--~~~d~G~Y~C~~~n~~~---~~~   76 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG------QKTEFKVD--SDDQWGEYSCVFLPEPM---GTA   76 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC------SEEEEEEC--GGGCCEEEEEEEESTTS---CEE
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccC------CcEEEEEe--chhhCeEEEEEEECCcC---cEE
Confidence            457899999999999998877  999999999997665321      24467777  69999999999999433   466


Q ss_pred             EEEEEecCCCCCCeeeeecc-eeecCCCeEEEEEEEEccC-CCeeEEEE---CC-EEcCCC-----------CeeEEEEC
Q psy16863        836 FLKLNVPKHYKKPKFLEELK-AVLSEGGAVNLECKVIGVP-QPTLKWFK---DG-RELKAG-----------DIHKIISG  898 (1075)
Q Consensus       836 ~l~V~~~~~~~~p~~~~~~~-~~~~~g~~~~L~C~v~g~p-~p~v~W~k---~g-~~l~~~-----------~~~~i~~~  898 (1075)
                      .|.|..+|.+     ..... ..+.+|+.++|.|.+.|.| .|.|+|+|   +| ..+..+           ....|.+.
T Consensus        77 ~l~V~~~P~~-----~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  151 (184)
T 3b5h_A           77 NIQLHGPPRV-----KAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIE  151 (184)
T ss_dssp             EEEECCSCCC-----EESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEEC
T ss_pred             EEEEecCCce-----eecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEe
Confidence            7888765533     22222 2477899999999999999 79999999   44 444332           12367777


Q ss_pred             CCC-ceeeEEEEEEEEeCCeeEEEEEEEEEe
Q psy16863        899 EDG-TCCLGIYTCEAHNCMGTTSSSAALLGF  928 (1075)
Q Consensus       899 ~~~-~~d~G~Y~C~a~N~~G~~~~~~~l~v~  928 (1075)
                      ... ..|+|.|+|.|.|.+|...+++.|.|.
T Consensus       152 ~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          152 NLNMEADPGQYRCNGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             SCCTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccccccCceEEEEEEeCCCcceEEEEEEEe
Confidence            787 789999999999999999999888875

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.82  E-value=1.2e-19  Score=178.78  Aligned_cols=162  Identities=14%  Similarity=0.180  Sum_probs=124.3

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCC-CCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISP-EPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p-~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      +|.+...+....+.+|+++.|.|.+.+.| .+.++|+|+|..+.....           .+.|.+++.+|+|.|+|.|.|
T Consensus         4 ~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~~-----------~~~~~~~~~~d~G~Y~C~~~~   72 (170)
T 3ry4_A            4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ-----------PSYRFKANNNDSGEYTCQTGQ   72 (170)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCCS-----------SEEEEECCGGGCEEEEEEETT
T ss_pred             CCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCcc-----------ceEEEecccccCeEEEEEEeC
Confidence            55666666667799999999999999987 679999999999875421           366779999999999999998


Q ss_pred             CCceEEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEE-ccCCCeeEEEECCEEcCC-CCeeEEEECCCCcee
Q psy16863        827 DFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVI-GVPQPTLKWFKDGRELKA-GDIHKIISGEDGTCC  904 (1075)
Q Consensus       827 ~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~-g~p~p~v~W~k~g~~l~~-~~~~~i~~~~~~~~d  904 (1075)
                      ..+..  .+.|.|..++     .........+.+|+.++|.|.+. +.|.+.++|+|||..+.. .....|.+......|
T Consensus        73 ~~~s~--~~~l~v~~~~-----~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~L~i~~v~~~d  145 (170)
T 3ry4_A           73 TSLSD--PVHLTVLFEW-----LVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSH  145 (170)
T ss_dssp             SBCCC--CEEEEEECCS-----EEEECSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEESSCCEEEESSCCGGG
T ss_pred             CCceE--eEEEEEECCc-----eEecCCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccccCCCCeEEEEeccccC
Confidence            65543  5666776532     33333344577899999999995 456689999999998753 234567778888899


Q ss_pred             eEEEEEEEEeCCeeE-EEEEEEEE
Q psy16863        905 LGIYTCEAHNCMGTT-SSSAALLG  927 (1075)
Q Consensus       905 ~G~Y~C~a~N~~G~~-~~~~~l~v  927 (1075)
                      +|.|+|.|.|..|.. +..+.|.|
T Consensus       146 ~G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          146 SGDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CEEEEEEEEeCcCccccccEEEEE
Confidence            999999999999973 33444443

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.82  E-value=5.1e-20  Score=184.62  Aligned_cols=163  Identities=13%  Similarity=0.104  Sum_probs=120.6

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .+|.|...+.. .+.+|++++|.|.+.+ +.+.+.|+|+|..+.......  ........|.|.+++.+|+|.|+|.|.|
T Consensus         3 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   78 (188)
T 1oll_A            3 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKP--PERINKVKFYIPDMNSRMAGQYSCIYRV   78 (188)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSS--CTTCCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCccccccccc--CCCcceeEEEeCcCCcccCeEEEEEecC
Confidence            46777766665 7899999999999985 457999999998875311100  0112345899999999999999999999


Q ss_pred             CCceEE--EEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCCeeEEEECCEEcC-----CCCeeEEEECC
Q psy16863        827 DFGQSI--TSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELK-----AGDIHKIISGE  899 (1075)
Q Consensus       827 ~~G~~~--~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~-----~~~~~~i~~~~  899 (1075)
                      ..|...  ..+.|.|..  .+.+|.+.......+.+|+.++|.|.+.+ +.+.+.|+|||..+.     ......|.+..
T Consensus        79 ~~~~~~~s~~~~l~V~~--~~~~p~i~~~p~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~L~I~~  155 (188)
T 1oll_A           79 GELWSEPSNLLDLVVTE--MYDTPTLSVHPGPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQRGYGKVQAEFPLGP  155 (188)
T ss_dssp             TTEECCCCCCEEEEEES--CSCCCEEEEESCSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEEEEECSSEEEEEEEE
T ss_pred             CCCCCCCCCceEEEecc--cCCCCeEEECCCCccccCCEEEEEEEcCC-CCCEEEEEECCccccccccCCCceeEEEECC
Confidence            876443  345555543  23456665544456789999999999865 567999999997664     34456677777


Q ss_pred             CCceeeEEEEEEEEeCC
Q psy16863        900 DGTCCLGIYTCEAHNCM  916 (1075)
Q Consensus       900 ~~~~d~G~Y~C~a~N~~  916 (1075)
                      ....|+|.|+|.|.|..
T Consensus       156 v~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          156 VTTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             CCGGGCEEEEEECEEET
T ss_pred             CCcCCCcEEEEEEEcCC
Confidence            88899999999999964

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.82  E-value=5.8e-21  Score=195.73  Aligned_cols=169  Identities=21%  Similarity=0.329  Sum_probs=130.5

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEee------------cCCcEEEEEeeCcEEEEEEccccC
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVV------------ESDNVKILKETLGVCHLKIHALEV  814 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~------------~~~~~~~~~~~~~~~~L~I~~~~~  814 (1075)
                      .++.|...+....+.+|+++.|.|.+.+.|.+.++|+|++..+.            ...++.+..     ..|.|.+++.
T Consensus         3 ~~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~L~i~~~~~   77 (209)
T 1nbq_A            3 GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP-----TGITFKSVTR   77 (209)
T ss_dssp             CCCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET-----TEEECSCCCT
T ss_pred             ceEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec-----cEEEEeeCCH
Confidence            35667777778889999999999999999999999999886531            123444321     4799999999


Q ss_pred             CCCeEEEEEEEeCCce--EEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEE-EccCCCeeEEEECCEEcCCCC
Q psy16863        815 ADQAEWKCIATNDFGQ--SITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKV-IGVPQPTLKWFKDGRELKAGD  891 (1075)
Q Consensus       815 ~D~G~Y~C~A~N~~G~--~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v-~g~p~p~v~W~k~g~~l~~~~  891 (1075)
                      +|+|.|+|.|.|..|.  ....+.|.|..+|.+..  ...  ...+.+|+.++|.|.+ .|.|.|.|+|+|+|..+..+.
T Consensus        78 ~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~--~~~--~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~  153 (209)
T 1nbq_A           78 EDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPT--VNI--PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNP  153 (209)
T ss_dssp             TSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCC--CCC--BSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCS
T ss_pred             HHCcEEEEEEecCCCCccceEEEEEEEecCCcCCC--ccc--ccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCcc
Confidence            9999999999999763  34466777776654322  111  2236789999999997 899999999999999887532


Q ss_pred             ----------------eeEEEECCCCceeeEEEEEEEEeCCeeEEEEEE
Q psy16863        892 ----------------IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAA  924 (1075)
Q Consensus       892 ----------------~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~  924 (1075)
                                      ...|.+......|+|.|+|.|.|..|....++.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~  202 (209)
T 1nbq_A          154 KSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNA  202 (209)
T ss_dssp             SSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCC
T ss_pred             ccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCccccccc
Confidence                            235677777888999999999999999844443

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.82  E-value=2e-19  Score=178.06  Aligned_cols=165  Identities=12%  Similarity=0.152  Sum_probs=128.6

Q ss_pred             CCCCeeeeecCceeeccCCeEEEEEEEecCCCcE-EEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEE
Q psy16863        347 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIK-IHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAE  425 (1075)
Q Consensus       347 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~-v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~  425 (1075)
                      ..+|.+...+....+.+|++++|.|.+.+.|.+. +.|+|+|..+...          ...|.|.+++.+|+|.|+|.+.
T Consensus         5 ~~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~----------~~~L~i~~~~~~d~G~Y~C~~~   74 (175)
T 1fnl_A            5 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ----------ASSYFIDAATVNDSGEYRCQTN   74 (175)
T ss_dssp             CCCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS----------CSEEEESSCCGGGCEEEEEECS
T ss_pred             CCCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCC----------ceEEEEeCCCcccCEEEEEEee
Confidence            3577777777778999999999999998887665 8999999887532          1258999999999999999999


Q ss_pred             eCCCceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCC-eEEEEeCCEeccCC-CEEEEEeCCCCCC
Q psy16863        426 NAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTP-QLIWYKDNKKIKAG-DIFALTANPKDPS  503 (1075)
Q Consensus       426 n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~v~W~~~g~~l~~~-~~~~l~i~~~~~~  503 (1075)
                      |..+  .....|.|..++     .........+.+|+.+.|.|.+.+.|++ .|.|+|+|..+... ....|.|..+..+
T Consensus        75 n~~~--s~~~~l~V~~~~-----~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~~~~~~L~i~~v~~~  147 (175)
T 1fnl_A           75 LSTL--SDPVQLEVHIGW-----LLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLK  147 (175)
T ss_dssp             SSCC--CCCEEEEEECSS-----EEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEEECCCEEESSCCGG
T ss_pred             CCcc--cccEEEEEeCCC-----ceeeCCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCCCCCCEEEEcccChh
Confidence            8655  345666666322     3333344557899999999999987665 99999999998533 2347899999999


Q ss_pred             CcEEEEEEEEeccee-eEEEEEEEEe
Q psy16863        504 SLGTYTCEAVNCMGA-AFSTSRVIAR  528 (1075)
Q Consensus       504 d~G~Y~C~a~n~~g~-~~~~~~v~v~  528 (1075)
                      |+|.|+|.|.|..|. ......|.|.
T Consensus       148 d~G~Y~C~a~n~~~~~~s~~~~l~V~  173 (175)
T 1fnl_A          148 DSGSYFCRGLVGSKNVSSETVNITIT  173 (175)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             hCeEEEEEEEcCCCCccCccEEEEEe
Confidence            999999999997654 4445566665

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.81  E-value=2e-20  Score=187.00  Aligned_cols=145  Identities=18%  Similarity=0.282  Sum_probs=107.8

Q ss_pred             eecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEcc-ccCCCCeEEEEEEEeCCceEEEEEEEE
Q psy16863        760 ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHA-LEVADQAEWKCIATNDFGQSITSCFLK  838 (1075)
Q Consensus       760 ~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~-~~~~D~G~Y~C~A~N~~G~~~~s~~l~  838 (1075)
                      ...|+++.|.|.+.+ |. .|+|+|||.+|..+.        ++  .|.|.+ ++.+|+|.|+|.|.|..|....+..+.
T Consensus        11 ~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~~--------~~--~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~   78 (186)
T 1jbj_A           11 SISGTSVELTCPLDS-DE-NLKWEKNGQELPQKH--------DK--HLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKAR   78 (186)
T ss_dssp             EEETTEEEEECSSCC-CT-TCEEEETTEEECSCC--------CS--EEEEESCCTTTSCEEEEEECSSCCCCCCEEECCC
T ss_pred             EeCCcEEEEEEeCCC-CC-ceEEEECCEECCCCC--------CC--EEEECCCCccccCEEEEEEEEeCCCcEEEEEEEE
Confidence            468999999999987 54 499999999987642        12  699999 999999999999999999865555554


Q ss_pred             EEecCCCC-------------CCe-----eeeecc---eeecCCCeEEEEEEEEccCCCeeEEEECCEEcCCC--CeeEE
Q psy16863        839 LNVPKHYK-------------KPK-----FLEELK---AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAG--DIHKI  895 (1075)
Q Consensus       839 V~~~~~~~-------------~p~-----~~~~~~---~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~--~~~~i  895 (1075)
                      |.......             +|.     +.....   ..+.+|++++|.|.+   |.|.|+|+|||.+|...  ....|
T Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~~~~~L  155 (186)
T 1jbj_A           79 VGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNATKNTW  155 (186)
T ss_dssp             CCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSCCSSCC
T ss_pred             EecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCCCcceE
Confidence            43211100             000     000000   124489999999998   88999999999999733  33445


Q ss_pred             EECCCCceeeEEEEEEEEeCCeeE
Q psy16863        896 ISGEDGTCCLGIYTCEAHNCMGTT  919 (1075)
Q Consensus       896 ~~~~~~~~d~G~Y~C~a~N~~G~~  919 (1075)
                      .+......|+|.|+|.|.|..|+.
T Consensus       156 ~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          156 NLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             EEEETTSCCEEEEEEEESSCEEEE
T ss_pred             EECCCCcCcCEEEEEEEEcCcCCc
Confidence            556677889999999999999986

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.81  E-value=9.2e-20  Score=179.88  Aligned_cols=156  Identities=22%  Similarity=0.319  Sum_probs=117.6

Q ss_pred             ceeeeecCCeEEEEEEEe--cCCCCeEEEEE--CCEEe----------ecCCcEEEEEeeCcEEEEEEccccCCCCeEEE
Q psy16863        756 KSCQATVNEEFKFTVQVS--ISPEPKVSWFR--DDQQV----------VESDNVKILKETLGVCHLKIHALEVADQAEWK  821 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~--g~p~p~v~W~k--~g~~i----------~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~  821 (1075)
                      ..+....|+++.|.|...  +.|.+.|.|+|  ++..|          ..+.++.+.  .++  .|.|.+++.+|+|.|+
T Consensus         7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~--~ng--sL~I~~v~~~DsG~Y~   82 (182)
T 1hnf_A            7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLF--KNG--TLKIKHLKTDDQDIYK   82 (182)
T ss_dssp             EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEEC--TTS--CEEECSCCGGGCEEEE
T ss_pred             cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEEC--CCC--CEEECCCChhhCEEEE
Confidence            446688999999999543  24577999999  99887          345666664  334  7999999999999999


Q ss_pred             EEEEeCCceEEE--EEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCCeeEEEECCEEcCCCCeeEEEECC
Q psy16863        822 CIATNDFGQSIT--SCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGE  899 (1075)
Q Consensus       822 C~A~N~~G~~~~--s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~~~i~~~~  899 (1075)
                      |.|.|..|....  .+.|.|..+  ..+|.+..       .+..++|.|.+.+.|.|.|+|+|||..| .+....|.+..
T Consensus        83 c~~~n~~g~~~~~~~~~L~V~~~--~~~P~i~~-------~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~~~~~i~~~~  152 (182)
T 1hnf_A           83 VSIYDTKGKNVLEKIFDLKIQER--VSKPKISW-------TCINTTLTCEVMNGTDPELNLYQDGKHL-KLSQRVITHKW  152 (182)
T ss_dssp             EEEEETTSCEEEEEEEEEEEECC--CCCCEEEE-------ETTTTEEEEECSSCSSCEEEEEESSCEE-EEESSCEEEEC
T ss_pred             EEEEeCCCceeEEEEEEEEEcCc--CCCCEEEE-------ccCcEEEEeEccCCCCCEEEEEECCEEC-CCCCcEEEEec
Confidence            999999998654  455666543  34455432       2336899999999999999999999988 33333343322


Q ss_pred             CCceeeEEEEEEEEeCCeeEEEEEEEE
Q psy16863        900 DGTCCLGIYTCEAHNCMGTTSSSAALL  926 (1075)
Q Consensus       900 ~~~~d~G~Y~C~a~N~~G~~~~~~~l~  926 (1075)
                       ...|+|.|+|.|.|.+|..++.+.+.
T Consensus       153 -~~~d~G~Y~C~a~N~~~~~~s~~~~~  178 (182)
T 1hnf_A          153 -TTSLSAKFKCTAGNKVSKESSVEPVS  178 (182)
T ss_dssp             -CSCEEEEEEEEEECSSCEEEEEEEEE
T ss_pred             -ccCCCcEEEEEEEeCCCCcEEcceec
Confidence             35789999999999999998877663

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.81  E-value=9.9e-20  Score=186.71  Aligned_cols=164  Identities=15%  Similarity=0.138  Sum_probs=122.8

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEE--EEEEcccCCCCceeEEEEEE
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFY--FIDLSSVSLFDSGRWTCLAE  425 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~--~L~I~~v~~~d~G~Y~C~a~  425 (1075)
                      .+|.|...+. ..+.+|++++|.|.+.+ +.+.|.|+|+|..+....+. ....+...  .|.|.+++.+|+|.|+|.|.
T Consensus         8 ~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   84 (218)
T 1uct_A            8 PMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGR-RLKFWNETDPEFVIDHMDANKAGRYQCQYR   84 (218)
T ss_dssp             CCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSE-ECC----CCCEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccc-cCCCCcceeeEEEEcccccccCEEEEEEEE
Confidence            4677766555 57899999999999976 57899999999766432211 11112223  68999999999999999999


Q ss_pred             eCCCceeeE--EEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccC-----CCEEEEEeC
Q psy16863        426 NAVGRSHCS--CELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA-----GDIFALTAN  498 (1075)
Q Consensus       426 n~~g~~~~s--~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~-----~~~~~l~i~  498 (1075)
                      |..|....+  ..|.|..  .+.+|.+...+...+.+|+.++|.|...+.|.+.+.|+|+|..+..     .....|.|.
T Consensus        85 n~~~~~~~s~~~~l~V~~--~~~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~~~~~~~~~~L~I~  162 (218)
T 1uct_A           85 IGHYRFRYSDTLELVVTG--LYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLG  162 (218)
T ss_dssp             ETTTEEEECCCEEEEEEC--SSCCCEEEESSCSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECC
T ss_pred             cCCCceeecCCEEEEEcC--cccCCEEEeCCCCccCCCCCEEEEEeCCCCCCCEEEEEECCCcccccccCCCccCEEEEc
Confidence            987754433  4555543  2345666555555688999999999777778889999999988753     235689999


Q ss_pred             CCCCCCcEEEEEEEEecc
Q psy16863        499 PKDPSSLGTYTCEAVNCM  516 (1075)
Q Consensus       499 ~~~~~d~G~Y~C~a~n~~  516 (1075)
                      .+..+|+|.|+|.|.|..
T Consensus       163 ~v~~~D~G~Y~C~a~n~~  180 (218)
T 1uct_A          163 PVDLNVSGIYRCYGWYNR  180 (218)
T ss_dssp             SCCGGGCEEEEEEEECTT
T ss_pred             cCCcccCEEEEEEEEcCC
Confidence            999999999999999863

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.81  E-value=4.7e-19  Score=178.21  Aligned_cols=160  Identities=13%  Similarity=0.230  Sum_probs=117.5

Q ss_pred             cceeeeecCCeEEEEEEEec-CCCCeEEEEECCEEee---cC---------------CcEEEEEeeCcEEEEEEccccCC
Q psy16863        755 LKSCQATVNEEFKFTVQVSI-SPEPKVSWFRDDQQVV---ES---------------DNVKILKETLGVCHLKIHALEVA  815 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g-~p~p~v~W~k~g~~i~---~~---------------~~~~~~~~~~~~~~L~I~~~~~~  815 (1075)
                      +..+.+.+|+++.|.|.+.+ .+.+.|.|+|+|..+.   .+               .|+.+.  .  ...|+|.+++.+
T Consensus         5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~--~--~~sL~I~~v~~~   80 (193)
T 2if7_A            5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT--Q--SYSLQLSNLKME   80 (193)
T ss_dssp             CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC--T--TCCEEECSCCGG
T ss_pred             CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC--C--CeEEEECCCCcc
Confidence            34567889999999999986 4557999999987653   11               133332  1  247999999999


Q ss_pred             CCeEEEEEEEeCCceEEEEEEEEEEecCCCCCCeeeeecceeecCCC-eEEEEEEEEcc-CCCeeEEEECCEEcCCCCee
Q psy16863        816 DQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGG-AVNLECKVIGV-PQPTLKWFKDGRELKAGDIH  893 (1075)
Q Consensus       816 D~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~-~~~L~C~v~g~-p~p~v~W~k~g~~l~~~~~~  893 (1075)
                      |+|.|+|.|.|..|.....+.|.|..++  ..|.+.... .....|. .++|.|.+.|. |.|.|+|+|+|..+..+...
T Consensus        81 D~G~Y~C~~~~~~~~~~~~~~L~V~~~~--~~p~i~~~~-~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~~~~l  157 (193)
T 2if7_A           81 DTGSYRAQISTKTSAKLSSYTLRILRQL--RNIQVTNHS-QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNL  157 (193)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEECCC--EEEEEEECC-C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEESSSEE
T ss_pred             cCceEEEEEEecCCCeEEEEEEEEEccC--CCCeEecCc-eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCCCCeE
Confidence            9999999999999987777788886543  224443322 1223455 89999999995 47999999999998877666


Q ss_pred             EEEECCCCceeeEEEEEEEEeCCeeEEEE
Q psy16863        894 KIISGEDGTCCLGIYTCEAHNCMGTTSSS  922 (1075)
Q Consensus       894 ~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~  922 (1075)
                      .|... ....|+|.|+|.|.|.+|..+..
T Consensus       158 ~i~~~-~~~~d~G~Y~C~a~N~~g~~s~~  185 (193)
T 2if7_A          158 TVSWD-PRISSEQDYTCIAENAVSNLSFS  185 (193)
T ss_dssp             EEEEC-TTTCSCCEEEEEEEETTEEEEEE
T ss_pred             EEEec-cCcCCCCcEEEEEECCCCccccc
Confidence            55432 22247999999999999998654

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.81  E-value=4e-19  Score=181.78  Aligned_cols=164  Identities=15%  Similarity=0.206  Sum_probs=123.5

Q ss_pred             eeeeecCCeEEEEEEEecCCCCeEEEEECCEEeec-------------------CCcEEEEEeeCcEEEEEEccccCCCC
Q psy16863        757 SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVE-------------------SDNVKILKETLGVCHLKIHALEVADQ  817 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~-------------------~~~~~~~~~~~~~~~L~I~~~~~~D~  817 (1075)
                      ...+.+|+++.|.|...+.|.+.+.|+|++.....                   ..++.+.  .+  ..|.|.+++.+|+
T Consensus         8 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~--~~--~~L~i~~v~~~D~   83 (208)
T 3r4d_A            8 PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY--SN--GSLLFQMITMKDM   83 (208)
T ss_dssp             SSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEEC--TT--SCEEECSCCGGGC
T ss_pred             cceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEe--cC--CeEEEccccccCC
Confidence            35688999999999988889999999998643221                   1122221  12  2699999999999


Q ss_pred             eEEEEEEEeCC-ceEEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCCeeEEEECCEEcCCCCe----
Q psy16863        818 AEWKCIATNDF-GQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDI----  892 (1075)
Q Consensus       818 G~Y~C~A~N~~-G~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~----  892 (1075)
                      |.|+|.|.|.. +.......|.|..++  ..|.+...... +.+|+.++|.|.+.+.| |.|+|+|+|..+..+.+    
T Consensus        84 G~Y~C~~~~~~~~~~~~~~~l~V~~~~--~~p~i~~~~~~-~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~~~  159 (208)
T 3r4d_A           84 GVYTLDMTDENYRRTQATVRFHVHQPV--TQPFLQVTNTT-VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLS  159 (208)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEEECCC--CCCEEEESCSS-CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEEEE
T ss_pred             eEEEEEEEcccCceeEEEEEEEeccCC--CCCEEecCCce-EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeEEc
Confidence            99999999985 555566777776543  34555444333 77899999999998866 89999999999986543    


Q ss_pred             ---eEEEECCCCceeeEEEEEEEEeCCeeEEE-EEEEEEe
Q psy16863        893 ---HKIISGEDGTCCLGIYTCEAHNCMGTTSS-SAALLGF  928 (1075)
Q Consensus       893 ---~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~-~~~l~v~  928 (1075)
                         ..|.+......|+|.|+|.|.|.+|+..+ .++|.|.
T Consensus       160 ~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~  199 (208)
T 3r4d_A          160 QNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII  199 (208)
T ss_dssp             TTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC
T ss_pred             CCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEE
Confidence               34666677788999999999999998775 3444444

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.81  E-value=2.9e-19  Score=181.69  Aligned_cols=175  Identities=18%  Similarity=0.233  Sum_probs=132.8

Q ss_pred             eeeecCceeeccCCeEEEEEE-EecCCC-cEEEEEECCEecCC--CCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        352 FIRRLHDIAVKVGTRARLLVE-IRSPTE-IKIHWYRNDRKLEE--NKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~-~~g~p~-~~v~W~k~g~~l~~--~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      ....+..+.+.+|+.+.|.|. +.+.|. +.++|+|++..+..  ..+......+  ..|.|.+++.+|+|.|+|.+.|.
T Consensus        11 ~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~--~~L~i~~v~~~d~G~Y~C~~~~~   88 (201)
T 3s97_C           11 PPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTN--GNLYIANVEASDKGNYSCFVSSP   88 (201)
T ss_dssp             CSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTT--CCEEESSCCGGGCEEEEEEEEEG
T ss_pred             CcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCC--CeEEECcCCcccCeEEEEEEEec
Confidence            344557789999999999999 788887 99999999987742  2333232222  24899999999999999999997


Q ss_pred             CCceee---EEEEEeecCC--CCCCCeeeeec-ceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccCCCE-----EEEE
Q psy16863        428 VGRSHC---SCELSVLVPK--AYKAPFFTKEL-EAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDI-----FALT  496 (1075)
Q Consensus       428 ~g~~~~---s~~l~V~~~~--~~~~p~~~~~~-~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~~-----~~l~  496 (1075)
                      .+....   ...+.+....  ...+|.+.... ...+.+|+.+.|.|.+.|.|.+.+.|++++..+.....     ..|.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~L~  168 (201)
T 3s97_C           89 SITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLK  168 (201)
T ss_dssp             GGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEEETTTTEEE
T ss_pred             CCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceeecCCCCEEE
Confidence            665543   2233332211  11233344333 33478999999999999999999999999998875433     3789


Q ss_pred             eCCCCCCCcEEEEEEEEecceeeEEEEEEEEe
Q psy16863        497 ANPKDPSSLGTYTCEAVNCMGAAFSTSRVIAR  528 (1075)
Q Consensus       497 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~  528 (1075)
                      |..+..+|+|.|+|.|.|..|....++.|.|+
T Consensus       169 i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          169 IFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            99999999999999999999999998888875

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.80  E-value=3.9e-19  Score=183.40  Aligned_cols=171  Identities=13%  Similarity=0.166  Sum_probs=118.0

Q ss_pred             eEEeccceeeeecCCeEEEEEEEecC-CCCeEEEEECC---EE------------ee---cCCcEEEEEeeCcEEEEEEc
Q psy16863        750 KFIEGLKSCQATVNEEFKFTVQVSIS-PEPKVSWFRDD---QQ------------VV---ESDNVKILKETLGVCHLKIH  810 (1075)
Q Consensus       750 ~~~~~~~~~~~~~g~~~~l~C~v~g~-p~p~v~W~k~g---~~------------i~---~~~~~~~~~~~~~~~~L~I~  810 (1075)
                      .+...+ ...+.+|+++.|.|.+.+. |.+.+.|||..   .+            ..   ...++.+.. ..+...|.|.
T Consensus         3 ~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~   80 (218)
T 3s96_B            3 VLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS-SGADRYLSIS   80 (218)
T ss_dssp             SEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE-ETTEEEEEES
T ss_pred             eEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec-CCceEEEEEc
Confidence            344445 6779999999999999999 89999999931   11            11   113666654 4567889999


Q ss_pred             cccCCCCeEEEEEEEeCCc-----eEEEEEEEEEEecCCCCCCeeee-ecceeecCCCeEEEEEEEEc-cCCC-eeEEEE
Q psy16863        811 ALEVADQAEWKCIATNDFG-----QSITSCFLKLNVPKHYKKPKFLE-ELKAVLSEGGAVNLECKVIG-VPQP-TLKWFK  882 (1075)
Q Consensus       811 ~~~~~D~G~Y~C~A~N~~G-----~~~~s~~l~V~~~~~~~~p~~~~-~~~~~~~~g~~~~L~C~v~g-~p~p-~v~W~k  882 (1075)
                      +++.+|+|.|+|.|.|..|     .......|.|...+. .+|.+.. ........|+.++|.|.+.| .|.| .|+|+|
T Consensus        81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~-~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k  159 (218)
T 3s96_B           81 NIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPK-STPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKA  159 (218)
T ss_dssp             SCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCC-BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             cCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCC-CCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEE
Confidence            9999999999999999887     222345677764322 3454433 22223446789999999998 5666 899999


Q ss_pred             CCEEcCCCC----------eeE----EEECCCCceeeEEEEEEEEeCCeeEEEEE
Q psy16863        883 DGRELKAGD----------IHK----IISGEDGTCCLGIYTCEAHNCMGTTSSSA  923 (1075)
Q Consensus       883 ~g~~l~~~~----------~~~----i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~  923 (1075)
                      ||.++..+.          .+.    +.+......|+|.|+|.|.|..|....++
T Consensus       160 ~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  214 (218)
T 3s96_B          160 NGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSL  214 (218)
T ss_dssp             TTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred             CCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccccc
Confidence            999987531          111    22222233468999999999998776543

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.80  E-value=1e-19  Score=184.40  Aligned_cols=164  Identities=19%  Similarity=0.251  Sum_probs=119.7

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      .+|.|...+. ..+.+|++++|.|.+.+.|. .+.|+|+|..+....+. ....+....|.|.+++.+|+|.|+|.|.|.
T Consensus         4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (198)
T 1ugn_A            4 PKPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRI-PQELVKKGQFPIPSITWEHTGRYRCYYGSD   80 (198)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTS-CHHHHTTTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCccccccccc-cccCCcccEEEECCCCHHHCeEEEEEEECC
Confidence            4677776555 58999999999999988765 79999999877421110 000111235899999999999999999998


Q ss_pred             C-Cc--eeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccCC-----------CEE
Q psy16863        428 V-GR--SHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAG-----------DIF  493 (1075)
Q Consensus       428 ~-g~--~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~-----------~~~  493 (1075)
                      . |.  .+..+.|.|...  ..+|.+...+...+.+|+.++|.|.+.+. .+.+.|+|+|..+...           ...
T Consensus        81 ~~g~~~~s~~~~l~V~~~--~~~p~i~~~~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~  157 (198)
T 1ugn_A           81 TAGRSESSDPLELVVTGA--YIKPTLSAQPSPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRA  157 (198)
T ss_dssp             TTEECCCCCCEEEEEECS--SCCCEEEEESCSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CCEE
T ss_pred             CCCcccCCccEEEEEccc--ccCCccccCCccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCccee
Confidence            7 53  344566666653  23456655554568899999999999987 7799999999887321           246


Q ss_pred             EEEeCCCCCCCcEEEEEEEEecce
Q psy16863        494 ALTANPKDPSSLGTYTCEAVNCMG  517 (1075)
Q Consensus       494 ~l~i~~~~~~d~G~Y~C~a~n~~g  517 (1075)
                      .|.|..+..+|+|.|+|.|.|..+
T Consensus       158 ~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          158 IFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             EEEECCCCTTSCEEEEEEEECTTS
T ss_pred             EEEecccCcccCeEEEEEEEeCCC
Confidence            899999999999999999999865

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.80  E-value=3e-19  Score=179.01  Aligned_cols=163  Identities=12%  Similarity=0.134  Sum_probs=122.6

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      .+|.|...+.. .+.+|++++|.|.+.+. .+.+.|+|+|..+..... ..........|.|.+++.+|+|.|+|.+.|.
T Consensus         3 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   79 (188)
T 1oll_A            3 PKPFIWAEPHF-MVPKEKQVTICCQGNYG-AVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRVG   79 (188)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCTT-CCEEEEEETTEEEEEECC-SSCTTCCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeecCC-cCCCCCCEEEEEecCCC-CCEEEEEECCCccccccc-ccCCCcceeEEEeCcCCcccCeEEEEEecCC
Confidence            36777766665 89999999999998654 579999999987642100 0011234457999999999999999999987


Q ss_pred             CCce--eeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEecc-----CCCEEEEEeCCC
Q psy16863        428 VGRS--HCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK-----AGDIFALTANPK  500 (1075)
Q Consensus       428 ~g~~--~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~-----~~~~~~l~i~~~  500 (1075)
                      .|..  +..+.|.|...  +.+|.+...+...+.+|+.++|.|.+.+ +.+.+.|+|+|..+.     ......|.|..+
T Consensus        80 ~~~~~~s~~~~l~V~~~--~~~p~i~~~p~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~L~I~~v  156 (188)
T 1oll_A           80 ELWSEPSNLLDLVVTEM--YDTPTLSVHPGPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPV  156 (188)
T ss_dssp             TEECCCCCCEEEEEESC--SCCCEEEEESCSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEEEEECSSEEEEEEEEC
T ss_pred             CCCCCCCCceEEEeccc--CCCCeEEECCCCccccCCEEEEEEEcCC-CCCEEEEEECCccccccccCCCceeEEEECCC
Confidence            6543  33455655532  3356666555556889999999999876 557999999998764     345668999999


Q ss_pred             CCCCcEEEEEEEEecc
Q psy16863        501 DPSSLGTYTCEAVNCM  516 (1075)
Q Consensus       501 ~~~d~G~Y~C~a~n~~  516 (1075)
                      ..+|+|.|+|.|.|..
T Consensus       157 ~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          157 TTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             CGGGCEEEEEECEEET
T ss_pred             CcCCCcEEEEEEEcCC
Confidence            9999999999999864

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.80  E-value=3.9e-19  Score=176.17  Aligned_cols=165  Identities=16%  Similarity=0.211  Sum_probs=127.8

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCc-EEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEe
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEI-KIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      .+|.+...+....+.+|++++|.|.+.+.+.+ .++|+|+|..+....          ..|.|.+++.+|+|.|+|.+.|
T Consensus         3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~----------~~L~i~~v~~~d~G~Y~C~~~~   72 (176)
T 1f2q_A            3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN----------SSLNIVNAKFEDSGEYKCQHQQ   72 (176)
T ss_dssp             -CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCS----------SEEEECSCCGGGCEEEEEECTT
T ss_pred             CCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCCc----------eEEEEeccceecCEEEEEEcCC
Confidence            47778878888899999999999999887764 699999999886432          2589999999999999999988


Q ss_pred             CCCceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEE-CCCCCeEEEEeCCEeccCC-CEEEEEeCCCCCCC
Q psy16863        427 AVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVM-GIPTPQLIWYKDNKKIKAG-DIFALTANPKDPSS  504 (1075)
Q Consensus       427 ~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~-g~p~~~v~W~~~g~~l~~~-~~~~l~i~~~~~~d  504 (1075)
                      ..+.  ....|.|..+     +.........+.+|+.+.|.|.+. +.|.+.+.|+|+|..+... ....|.|..+..+|
T Consensus        73 ~~~s--~~~~l~V~~~-----~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~L~i~~v~~~d  145 (176)
T 1f2q_A           73 VNES--EPVYLEVFSD-----WLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVED  145 (176)
T ss_dssp             SSCC--CCEEEEEECS-----SEEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCCSSEEEESSCCGGG
T ss_pred             cccc--ccEEEEEeCc-----ceeecCCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeecCCCeEEECCCCccc
Confidence            6554  3456666632     234444445688999999999995 5667799999999998543 34589999999999


Q ss_pred             cEEEEEEEEeccee-eEEEEEEEEec
Q psy16863        505 LGTYTCEAVNCMGA-AFSTSRVIARG  529 (1075)
Q Consensus       505 ~G~Y~C~a~n~~g~-~~~~~~v~v~~  529 (1075)
                      +|.|+|.|.|..+. ....+.|.|.+
T Consensus       146 ~G~Y~C~a~n~~~~~~s~~~~l~V~~  171 (176)
T 1f2q_A          146 SGTYYCTGKVWQLDYESEPLNITVIK  171 (176)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CEEEEEEEEeCCcceEecCEEEEEec
Confidence            99999999996443 44456777763

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.80  E-value=1.1e-19  Score=179.39  Aligned_cols=156  Identities=15%  Similarity=0.239  Sum_probs=119.6

Q ss_pred             ceeeccCCeEEEEEEEec--CCCcEEEEEECCEecC----------CCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEE
Q psy16863        358 DIAVKVGTRARLLVEIRS--PTEIKIHWYRNDRKLE----------ENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAE  425 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~~g--~p~~~v~W~k~g~~l~----------~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~  425 (1075)
                      .+.+.+|++++|.|...+  .+.+.|.|+|++..+.          ...++.+..+|.   |.|.+++.+|+|.|+|.|.
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gs---L~I~~v~~~D~G~Y~C~~~   81 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD---LKIKNLTRDDSGTYNVTVY   81 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSC---EEESSCCGGGCEEEEEEEE
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCc---EEEcccccccCEEEEEEEE
Confidence            356789999999995323  5567999999997552          345666644554   8999999999999999999


Q ss_pred             eCCCce--eeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccCCCEEEEEeCCCCCC
Q psy16863        426 NAVGRS--HCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPS  503 (1075)
Q Consensus       426 n~~g~~--~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~~~~l~i~~~~~~  503 (1075)
                      |..|..  ...+.|.|..++  ..|.+.       ..+..+.|.|.+.|.|.|.|+|+|+|+.+..+.+..+.  .+..+
T Consensus        82 n~~g~~~~~~~~~l~V~~~~--~~p~i~-------~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~~~i~--~~~~~  150 (176)
T 1hng_A           82 STNGTRILNKALDLRILEMV--SKPMIY-------WECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMS--YQWTN  150 (176)
T ss_dssp             ETTCCEEEEEEEEEEEECCC--CCCEEE-------EETTTTEEEEECSSCSSCEEEEEETTEEEEEESSSEEE--EECSC
T ss_pred             eCCCCEEEEEEEEEEEeCCC--CCCEEE-------ecCCcEEEEEEecCCCCcEEEEEECCEECCCCCcEEEE--EEEcc
Confidence            999986  555667776542  233332       23456999999999999999999999999776654443  56689


Q ss_pred             CcEEEEEEEEecceeeEEEEEEEE
Q psy16863        504 SLGTYTCEAVNCMGAAFSTSRVIA  527 (1075)
Q Consensus       504 d~G~Y~C~a~n~~g~~~~~~~v~v  527 (1075)
                      |+|.|+|.|.|..|...+...|.+
T Consensus       151 d~G~Y~C~a~N~~g~~~~~~~l~~  174 (176)
T 1hng_A          151 LRAPFKCKAVNRVSQESEMEVVNC  174 (176)
T ss_dssp             CSSCEEEEEEETTEEEEEEECCCC
T ss_pred             CCeEEEEEEEecCCCceecccccC
Confidence            999999999999998887765543

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.80  E-value=4e-19  Score=187.78  Aligned_cols=172  Identities=15%  Similarity=0.156  Sum_probs=126.0

Q ss_pred             eecCceeeccCCeEEEEEEEec---CCCcEEEEEECCEecC------------------------------CCCcEEEEE
Q psy16863        354 RRLHDIAVKVGTRARLLVEIRS---PTEIKIHWYRNDRKLE------------------------------ENKIYRTQH  400 (1075)
Q Consensus       354 ~~~~~~~v~~G~~v~l~C~~~g---~p~~~v~W~k~g~~l~------------------------------~~~~~~~~~  400 (1075)
                      .++..+.+.+|++++|.|.+.+   .|.+.|.|+|++....                              ...++.+..
T Consensus         7 ~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~   86 (250)
T 2fbo_J            7 TTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN   86 (250)
T ss_dssp             CSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC
T ss_pred             cCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc
Confidence            3445678999999999999987   7789999999985431                              012222222


Q ss_pred             cCCEEEEEEcccCCCCceeEEEEEEeCCCce-----eeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCC
Q psy16863        401 DGNFYFIDLSSVSLFDSGRWTCLAENAVGRS-----HCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPT  475 (1075)
Q Consensus       401 ~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~-----~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~  475 (1075)
                      ++ ...|.|.+++.+|+|.|+|.|.|..+..     ..++.|.|..++....+.+.......+.+|+.+.|.|.+.|.|.
T Consensus        87 ~~-~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~  165 (250)
T 2fbo_J           87 LA-APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCAN  165 (250)
T ss_dssp             TT-SCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTT
T ss_pred             CC-cceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCC
Confidence            11 2359999999999999999999987753     45777888775432222322222234668999999999999999


Q ss_pred             CeEEEEeCCEeccCC-------------------------C-----EEEEEeCCCCCCCcEEEEEEEEe---cceeeEEE
Q psy16863        476 PQLIWYKDNKKIKAG-------------------------D-----IFALTANPKDPSSLGTYTCEAVN---CMGAAFST  522 (1075)
Q Consensus       476 ~~v~W~~~g~~l~~~-------------------------~-----~~~l~i~~~~~~d~G~Y~C~a~n---~~g~~~~~  522 (1075)
                      |.|+|+|++..+...                         .     ...|.|..+..+|+|.|+|.|.|   ..|....+
T Consensus       166 p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~  245 (250)
T 2fbo_J          166 ANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSS  245 (250)
T ss_dssp             CEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEE
T ss_pred             CeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCcccee
Confidence            999999999877541                         1     14799999999999999999999   55566555


Q ss_pred             EEEE
Q psy16863        523 SRVI  526 (1075)
Q Consensus       523 ~~v~  526 (1075)
                      ..|.
T Consensus       246 ~~l~  249 (250)
T 2fbo_J          246 TILK  249 (250)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5543

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.79  E-value=4e-19  Score=182.51  Aligned_cols=167  Identities=17%  Similarity=0.252  Sum_probs=120.9

Q ss_pred             EEeccceeeeecCCeEEEEEEEecCCCCeEEEEECC--EEe----------e--cCCcEEEEEeeCcEEEEEEccccCCC
Q psy16863        751 FIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDD--QQV----------V--ESDNVKILKETLGVCHLKIHALEVAD  816 (1075)
Q Consensus       751 ~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g--~~i----------~--~~~~~~~~~~~~~~~~L~I~~~~~~D  816 (1075)
                      +...+....+.+|+++.|.|.+.+.|.+.|+|+|++  ..+          .  ...++.+.. ..+...|.|.+++.+|
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D   82 (213)
T 3d9a_L            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG-SGTDFTLSINSVETED   82 (213)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-ETTEEEEEESSCCGGG
T ss_pred             EEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEc-CCCEEEEEECCCChhh
Confidence            344456677999999999999999999999999853  221          1  124666654 4457799999999999


Q ss_pred             CeEEEEEEEeCCceEEE-EEEEEEEecCCCCCCeeeee-cceeecCCCeEEEEEEEEc-cCCC-eeEEEECCEEcCCCC-
Q psy16863        817 QAEWKCIATNDFGQSIT-SCFLKLNVPKHYKKPKFLEE-LKAVLSEGGAVNLECKVIG-VPQP-TLKWFKDGRELKAGD-  891 (1075)
Q Consensus       817 ~G~Y~C~A~N~~G~~~~-s~~l~V~~~~~~~~p~~~~~-~~~~~~~g~~~~L~C~v~g-~p~p-~v~W~k~g~~l~~~~-  891 (1075)
                      +|.|+|.|.|..|.... ...|.|..+.  .+|.+... ......+|+.++|.|.+.| .|.+ .|+|+|||.++..+. 
T Consensus        83 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~--~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~  160 (213)
T 3d9a_L           83 FGMYFCQQSNSWPYTFGGGTKLEIKRAD--AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL  160 (213)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEECCCC--BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEE
T ss_pred             CEEEEEeeecCCcceeCCCEEEEEecCC--CCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceee
Confidence            99999999999876433 3466665422  24554432 2222347889999999998 5655 899999999987651 


Q ss_pred             -----------e----eEEEECCCCceeeEEEEEEEEeCCeeEE
Q psy16863        892 -----------I----HKIISGEDGTCCLGIYTCEAHNCMGTTS  920 (1075)
Q Consensus       892 -----------~----~~i~~~~~~~~d~G~Y~C~a~N~~G~~~  920 (1075)
                                 .    ..|.+......|+|.|+|.|.|......
T Consensus       161 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  204 (213)
T 3d9a_L          161 NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSP  204 (213)
T ss_dssp             EEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSC
T ss_pred             ecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCc
Confidence                       1    1455555556789999999999887643

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.79  E-value=5.2e-19  Score=179.76  Aligned_cols=160  Identities=14%  Similarity=0.302  Sum_probs=113.7

Q ss_pred             eeeeecCCeEEEEEEEe----cCCCCeEEEEECCEEeec------------CCcEEEEEeeCcEEEEEEccccCCCCeEE
Q psy16863        757 SCQATVNEEFKFTVQVS----ISPEPKVSWFRDDQQVVE------------SDNVKILKETLGVCHLKIHALEVADQAEW  820 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~----g~p~p~v~W~k~g~~i~~------------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y  820 (1075)
                      .+.+..|+++.|.|.+.    +.|.+.+.|+|++..+..            ..+..+  ...+...|.|.+++.+|+|.|
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~--~~~~~~~L~I~~v~~~D~G~Y   80 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIF--DITNNLSIVILALRPSDEGTY   80 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEE--ESTTTTEEEECSCCGGGCEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEE--ccCCCcEEEEecccchhCeEE
Confidence            45688999999999996    347789999999988731            123322  112334799999999999999


Q ss_pred             EEEEEeCCceEE-----EEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEE-ccCCCeeEEEECCEEcCCCCeeE
Q psy16863        821 KCIATNDFGQSI-----TSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVI-GVPQPTLKWFKDGRELKAGDIHK  894 (1075)
Q Consensus       821 ~C~A~N~~G~~~-----~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~-g~p~p~v~W~k~g~~l~~~~~~~  894 (1075)
                      +|.|.|..|...     ..+.|.|..+  ...|.+...   ....|+.++|.|.+. |.|.|.|+|+|||.++...... 
T Consensus        81 ~C~~~~~~g~~~~~~~~~~~~l~V~~~--~~~p~~~~~---~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~-  154 (201)
T 1dr9_A           81 ECVVLKYEKDAFKREHLAEVTLSVKAD--FPTPSISDF---EIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTT-  154 (201)
T ss_dssp             EEEEEECCTTSCEEEEEEEEEEEEECC--CCCCEEEEE---ECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEE-
T ss_pred             EEEEEcCCCCccccccccEEEEEEcCC--CCCCceEec---cCCCCCeEEEEEecCCccCCCEEEEEECCEECccccce-
Confidence            999999887643     3455555443  334443321   124688999999995 9999999999999988743221 


Q ss_pred             EEECCC------------CceeeEEEEEEEEeCCeeEEEEEE
Q psy16863        895 IISGED------------GTCCLGIYTCEAHNCMGTTSSSAA  924 (1075)
Q Consensus       895 i~~~~~------------~~~d~G~Y~C~a~N~~G~~~~~~~  924 (1075)
                      +.....            ...|.|.|+|.|.|..|..++...
T Consensus       155 ~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~  196 (201)
T 1dr9_A          155 VSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFN  196 (201)
T ss_dssp             EEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEE
T ss_pred             EEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEe
Confidence            111111            124789999999999999876554

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.79  E-value=4.3e-19  Score=184.99  Aligned_cols=168  Identities=15%  Similarity=0.290  Sum_probs=122.0

Q ss_pred             cceeeeecCCeEEEEEEEecCCC-CeEEEEECCEE-----ee----cCCcEE--EE----------EeeCcEEEEEEccc
Q psy16863        755 LKSCQATVNEEFKFTVQVSISPE-PKVSWFRDDQQ-----VV----ESDNVK--IL----------KETLGVCHLKIHAL  812 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p~-p~v~W~k~g~~-----i~----~~~~~~--~~----------~~~~~~~~L~I~~~  812 (1075)
                      +.+..+.+|+++.|.|.+.+.|. +.+.|+|++..     +.    ....+.  +.          ....+  .|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~--~L~i~~v   84 (231)
T 2pet_A            7 PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQG--RLVLAEA   84 (231)
T ss_dssp             CSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTC--CEEESSC
T ss_pred             CCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCc--eEEEccc
Confidence            34567899999999999999985 89999986543     11    111111  11          12222  4999999


Q ss_pred             cCCCCeEEEEEEEeCC-ceEEEEEEEEEEecCCCCCCeeeeecce-eecCCCeE-EEEEEE-EccCCCeeEEEECCEEcC
Q psy16863        813 EVADQAEWKCIATNDF-GQSITSCFLKLNVPKHYKKPKFLEELKA-VLSEGGAV-NLECKV-IGVPQPTLKWFKDGRELK  888 (1075)
Q Consensus       813 ~~~D~G~Y~C~A~N~~-G~~~~s~~l~V~~~~~~~~p~~~~~~~~-~~~~g~~~-~L~C~v-~g~p~p~v~W~k~g~~l~  888 (1075)
                      +.+|+|.|+|.|.|.. |....++.|.|..++.  .|.+...... .+.+|+.+ +|.|.+ .|.|.|.|+|+|||.++.
T Consensus        85 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~--~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~  162 (231)
T 2pet_A           85 QVGDERDYVCVVRAGAAGTAEATARLNVFAKPE--ATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLE  162 (231)
T ss_dssp             CGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCC--CCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECC
T ss_pred             CcccCceEEEEEEecCCCceEEEEEEEEEecCC--CcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCc
Confidence            9999999999999997 8888888899987664  3555544333 25688887 999999 899999999999999997


Q ss_pred             CCC----e------------------eEEEECCCCceeeEEEEEEEEe-----CCee-EEEEEEEE
Q psy16863        889 AGD----I------------------HKIISGEDGTCCLGIYTCEAHN-----CMGT-TSSSAALL  926 (1075)
Q Consensus       889 ~~~----~------------------~~i~~~~~~~~d~G~Y~C~a~N-----~~G~-~~~~~~l~  926 (1075)
                      .+.    +                  ..|.+......|+|.|+|.|.|     ..|. .+..+.|.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~  228 (231)
T 2pet_A          163 VPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLT  228 (231)
T ss_dssp             CCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECC
T ss_pred             cccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEE
Confidence            665    1                  2344443334469999999999     5666 44444443

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.79  E-value=4.7e-19  Score=182.73  Aligned_cols=170  Identities=14%  Similarity=0.134  Sum_probs=121.3

Q ss_pred             cceeeeecCCeEEEEEEEecCCCC---eEEEEECCEEeecCC------------------cEEEEE--eeCcEEEEEEcc
Q psy16863        755 LKSCQATVNEEFKFTVQVSISPEP---KVSWFRDDQQVVESD------------------NVKILK--ETLGVCHLKIHA  811 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p~p---~v~W~k~g~~i~~~~------------------~~~~~~--~~~~~~~L~I~~  811 (1075)
                      +..+++..|++++|.|.+.+.|.+   .|+|+|++..+....                  ++.+..  ...+.+.|.|.+
T Consensus         6 p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~   85 (218)
T 4frw_A            6 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRN   85 (218)
T ss_dssp             CSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESS
T ss_pred             CCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEee
Confidence            345778999999999999998876   489999876443211                  111110  011234699999


Q ss_pred             ccCCCCeEEEEEEEeCCceEEEEE-EEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCCeeEEEECCEEcCCC
Q psy16863        812 LEVADQAEWKCIATNDFGQSITSC-FLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAG  890 (1075)
Q Consensus       812 ~~~~D~G~Y~C~A~N~~G~~~~s~-~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~  890 (1075)
                      ++.+|+|.|.|.+.|..+...... .+.+..++   .+.........+..|+.+.|.|.+.|.|+|.|+|+|+|..+..+
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~  162 (218)
T 4frw_A           86 AVQADEGEYECRVSTFPAGSFQARLRLRVLVPP---LPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSS  162 (218)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCC---CCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEE
T ss_pred             ccHHHCCceeEEEEeccCceeeeEEEEEEeeec---cceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccC
Confidence            999999999999999777655433 33333322   12222222334668899999999999999999999999876532


Q ss_pred             C----------eeEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEE
Q psy16863        891 D----------IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLG  927 (1075)
Q Consensus       891 ~----------~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v  927 (1075)
                      .          ...|.+......|+|.|+|.|+|.+|..+..+++.+
T Consensus       163 ~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v  209 (218)
T 4frw_A          163 RSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHIL  209 (218)
T ss_dssp             EEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred             ceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEE
Confidence            1          234667777788999999999999998877777664

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.79  E-value=4.5e-19  Score=180.00  Aligned_cols=163  Identities=10%  Similarity=0.098  Sum_probs=115.9

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .+|.|...+. ..+.+|++++|.|.+. .|.+.+.|+|+|..+.................|.|.+++.+|+|.|+|.|.|
T Consensus         7 ~~P~i~~~p~-~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~   84 (201)
T 1nkr_A            7 RKPSLLAHPG-PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSV   84 (201)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEB
T ss_pred             CCCeEEEEcC-CccCCCCcEEEEEecc-CCCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEec
Confidence            4677766554 6688999999999998 4788999999998664321110001111245799999999999999999997


Q ss_pred             CCc-----eEEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCCeeEEEECCEEcCCC----------C
Q psy16863        827 DFG-----QSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAG----------D  891 (1075)
Q Consensus       827 ~~G-----~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~----------~  891 (1075)
                      ..+     ..+..+.|.|..+  ..+|.+.......+.+|+.++|.|.+.+ |.+.|.|+|||..+..+          .
T Consensus        85 ~~~~~~~~~~s~~~~l~V~~~--~~~p~i~~~p~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~  161 (201)
T 1nkr_A           85 THSPYQVSAPSDPLDIVIIGL--YEKPSLSAQPGPTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTF  161 (201)
T ss_dssp             TTBTTCCCCCCCCEEEEEECS--SCCCEEEEESCSEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEE
T ss_pred             CCCCccccCCCCCEEEEeecc--CCCCceecCCCCccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccCCce
Confidence            532     2233456666643  3456665444446789999999999976 67899999999876532          1


Q ss_pred             eeEEEECCCCceeeEEEEEEEEeCC
Q psy16863        892 IHKIISGEDGTCCLGIYTCEAHNCM  916 (1075)
Q Consensus       892 ~~~i~~~~~~~~d~G~Y~C~a~N~~  916 (1075)
                      ...|.+....  |+|.|+|.|.|..
T Consensus       162 ~~~L~i~~v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          162 QADFPLGPAT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             EEEEEEEECC--SCEEEEEEEEETT
T ss_pred             EEEEEeCCcC--CCeeEEEEEEcCC
Confidence            3345555554  9999999999864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.79  E-value=2.8e-19  Score=198.70  Aligned_cols=192  Identities=18%  Similarity=0.193  Sum_probs=151.7

Q ss_pred             CCEEEEEEEEeCCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEE
Q psy16863        319 DGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRT  398 (1075)
Q Consensus       319 d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~  398 (1075)
                      +.|.|+|.+.+....    +.+    ..-.+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.....  .
T Consensus       136 ~~~~~~C~~~~~l~~----l~~----~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~--~  205 (347)
T 2ifg_A          136 PEQKLQCHGQGPLAH----MPN----ASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM--K  205 (347)
T ss_dssp             GGGCCCCSSSSCSSC----CCC----TTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC--C
T ss_pred             cccCCCCCCChHHhc----CCc----ccCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccc--c
Confidence            468899988772211    111    223578898888899999999999999999999999999999976543211  1


Q ss_pred             EEcCCEEEEEEcccCCCCce-eEEEEEEeCCCceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCCe
Q psy16863        399 QHDGNFYFIDLSSVSLFDSG-RWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQ  477 (1075)
Q Consensus       399 ~~~g~~~~L~I~~v~~~d~G-~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~  477 (1075)
                      ........|.|.+++.+|+| .|+|.|.|..|....++.|.|..+|.+    +.    ....+|+.+.|.|.+.|.|.|.
T Consensus       206 ~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~i----~~----~~~~~g~~v~l~C~~~g~P~p~  277 (347)
T 2ifg_A          206 SGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASV----QL----HTAVEMHHWCIPFSVDGQPAPS  277 (347)
T ss_dssp             CCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEEEEE----EE----CCCEESSSEEEEEEEEEESCCE
T ss_pred             ceecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCCCee----ee----ccCccCceEEEEEEeeecCCCc
Confidence            12334557999999999999 999999999998887777777655431    11    1245789999999999999999


Q ss_pred             EEEEeCCEeccCCC----------------EEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEe
Q psy16863        478 LIWYKDNKKIKAGD----------------IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIAR  528 (1075)
Q Consensus       478 v~W~~~g~~l~~~~----------------~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~  528 (1075)
                      |+|+|+|..+..+.                ...|.|..+..+|+|.|+|.|.|..|....++.+.|.
T Consensus       278 i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  344 (347)
T 2ifg_A          278 LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM  344 (347)
T ss_dssp             EEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSC
T ss_pred             EEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEec
Confidence            99999999987543                2348999999999999999999999999888888775

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.79  E-value=1.4e-18  Score=171.21  Aligned_cols=154  Identities=16%  Similarity=0.166  Sum_probs=121.9

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCC-CcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEe
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p-~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      .+|.+...+....+.+|+++.|.|.+.+.| .+.+.|+|+|..+.....          .+.|.+++.+|+|.|+|.+.|
T Consensus         3 p~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~~----------~~~~~~~~~~d~G~Y~C~~~~   72 (170)
T 3ry4_A            3 PKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ----------PSYRFKANNNDSGEYTCQTGQ   72 (170)
T ss_dssp             CBCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCCS----------SEEEEECCGGGCEEEEEEETT
T ss_pred             CCCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCcc----------ceEEEecccccCeEEEEEEeC
Confidence            356666677777899999999999998876 679999999999876432          245678999999999999997


Q ss_pred             CCCceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEE-CCCCCeEEEEeCCEeccC-CCEEEEEeCCCCCCC
Q psy16863        427 AVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVM-GIPTPQLIWYKDNKKIKA-GDIFALTANPKDPSS  504 (1075)
Q Consensus       427 ~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~-g~p~~~v~W~~~g~~l~~-~~~~~l~i~~~~~~d  504 (1075)
                      ..+  .....|.|..++     .+.......+.+|+.+.|.|.+. +.|.+.+.|+|+|..+.. .....|.|..+..+|
T Consensus        73 ~~~--s~~~~l~v~~~~-----~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~L~i~~v~~~d  145 (170)
T 3ry4_A           73 TSL--SDPVHLTVLFEW-----LVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSH  145 (170)
T ss_dssp             SBC--CCCEEEEEECCS-----EEEECSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEESSCCEEEESSCCGGG
T ss_pred             CCc--eEeEEEEEECCc-----eEecCCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccccCCCCeEEEEeccccC
Confidence            544  335667776543     33444445678999999999995 556689999999998753 234579999999999


Q ss_pred             cEEEEEEEEeccee
Q psy16863        505 LGTYTCEAVNCMGA  518 (1075)
Q Consensus       505 ~G~Y~C~a~n~~g~  518 (1075)
                      +|.|+|.|.|..|.
T Consensus       146 ~G~Y~C~a~n~~g~  159 (170)
T 3ry4_A          146 SGDYHCTGNIGYTL  159 (170)
T ss_dssp             CEEEEEEEEETTEE
T ss_pred             CEEEEEEEEeCcCc
Confidence            99999999999986

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.79  E-value=5.8e-18  Score=171.38  Aligned_cols=162  Identities=12%  Similarity=0.157  Sum_probs=121.7

Q ss_pred             eeeccCCeEEEEEEEecCCCcEEEEEECC-EecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEE
Q psy16863        359 IAVKVGTRARLLVEIRSPTEIKIHWYRND-RKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCEL  437 (1075)
Q Consensus       359 ~~v~~G~~v~l~C~~~g~p~~~v~W~k~g-~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l  437 (1075)
                      ..+.+|++++|.|.+.|.|.+.|.|+++. ..+.  .+  ....+....|.|.+++.+|+|.|+|.|.|..|..+..+.|
T Consensus        11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~--~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l   86 (202)
T 1vca_A           11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN--GK--VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV   86 (202)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS--SE--EEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEE
T ss_pred             EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc--ce--EEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEE
Confidence            34559999999999999999999999943 2221  11  2234455679999999999999999999998888778888


Q ss_pred             EeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCC---CeEEEEeCCEeccCC-----------C--EEEEEeCCCC
Q psy16863        438 SVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPT---PQLIWYKDNKKIKAG-----------D--IFALTANPKD  501 (1075)
Q Consensus       438 ~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~---~~v~W~~~g~~l~~~-----------~--~~~l~i~~~~  501 (1075)
                      .|..+|..  +.+..  ...+.+|+.++|.|.+.|.|+   +.|+|+|++.+|...           .  ...|.+....
T Consensus        87 ~V~~~p~~--~~~~~--~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~  162 (202)
T 1vca_A           87 EIYSFPKD--PEIHL--SGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVI  162 (202)
T ss_dssp             EEEBCCSC--CEEEE--SSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCG
T ss_pred             EEEeCCCC--CEeCC--ceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEeee
Confidence            88876542  23332  245789999999999997543   379999999987421           1  2345788888


Q ss_pred             CCCcEEEEEEEEeccee-------eEEEEEEEEe
Q psy16863        502 PSSLGTYTCEAVNCMGA-------AFSTSRVIAR  528 (1075)
Q Consensus       502 ~~d~G~Y~C~a~n~~g~-------~~~~~~v~v~  528 (1075)
                      .+|.|.|+|.|.|..|.       ...+..|.|.
T Consensus       163 ~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~  196 (202)
T 1vca_A          163 EDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVY  196 (202)
T ss_dssp             GGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEE
T ss_pred             ccCCCeEEEEEEccccCCCCcceeEeeEEEEEEe
Confidence            88899999999998876       2345556554

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.79  E-value=2.2e-19  Score=179.29  Aligned_cols=155  Identities=15%  Similarity=0.130  Sum_probs=118.5

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      .+|.+...+. ..+.+|++++|.|.+.+ +.+.+.|+|+|...        ...+  ..|.|.+++.+|+|.|+|.|.|.
T Consensus         7 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~--------~~~~--~~L~i~~v~~~D~G~Y~C~a~n~   74 (184)
T 2gi7_A            7 PKPSLQALPS-SLVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR--------YQDQ--AVLFIPAMKRSLAGRYRCSYQNG   74 (184)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEECST-TCSEEEEEETTTCC--------EESS--SEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCeEEeCCC-ccccCCCcEEEEEeCCC-CCCEEEEEECCccc--------cCcc--cEEEECcCChhhCceEEEEEEcC
Confidence            4677766655 48999999999999977 67899999998751        1122  25899999999999999999998


Q ss_pred             CCcee--eEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccCC-----CEEEEEeCCC
Q psy16863        428 VGRSH--CSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAG-----DIFALTANPK  500 (1075)
Q Consensus       428 ~g~~~--~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~-----~~~~l~i~~~  500 (1075)
                      .|...  ....|.|...  ..+|.+...+...+.+|+.++|.|.+.+. ++.+.|+|+|..+...     ....|.|..+
T Consensus        75 ~g~~~~s~~~~l~V~~~--~~~p~i~~~p~~~v~~G~~v~l~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~L~i~~v  151 (184)
T 2gi7_A           75 SLWSLPSDQLELVATGV--FAKPSLSAQPGPAVSSGGDVTLQCQTRYG-FDQFALYKEGDPAPYKNPERWYRASFPIITV  151 (184)
T ss_dssp             TEEBCCCCCEEEEEESS--SCCCEEEEECCCSSCCTTCEEEEEECSSC-CCEEEEEECCCCTTSCCCCEEEEESSSEEEE
T ss_pred             CCccCCCCCEEEEecCc--CCCCEEEeCCCceecCCCcEEEEEEcCCC-CcEEEEEECCCcCcceecCCCceEEEEEccC
Confidence            76433  3455555432  33456665555557899999999998765 4699999999987642     2345778889


Q ss_pred             CCCCcEEEEEEEEecce
Q psy16863        501 DPSSLGTYTCEAVNCMG  517 (1075)
Q Consensus       501 ~~~d~G~Y~C~a~n~~g  517 (1075)
                      ..+|+|.|+|.|.|..+
T Consensus       152 ~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          152 TAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             TTCCSEEEEEEEECTTS
T ss_pred             CccCCeEEEEEEEeCCC
Confidence            99999999999999754

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.78  E-value=1.2e-18  Score=178.56  Aligned_cols=180  Identities=16%  Similarity=0.136  Sum_probs=124.6

Q ss_pred             ccccceeecc--ceeEEEEEecCCCceEEEEecCCCeeeEEecC--CCcccc-CCCeEEEeeCCeEEEEEcccCCCCCEE
Q psy16863        248 RLHDIAVKVG--TRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQ--GDHPIF-GNRFRAINRDGRTELNIRRVRRDDGGR  322 (1075)
Q Consensus       248 ~~~~~~v~~g--~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~--~~~~~~-~~~~~~~~~~~~~~L~I~~~~~~d~G~  322 (1075)
                      .+..+.+.+|  +.++|.|.+.+           +.+.+.|+++  ++..+. +.++....   ...|.|.+++.+|+|.
T Consensus        13 ~p~~v~v~eG~~~~v~L~C~~~~-----------p~~~v~w~~~~~~g~~~~~~~~~~~~~---~~~l~I~~v~~~D~G~   78 (213)
T 2x1w_L           13 QHGVVYITENKNKTVVIPCLGSI-----------SNLNVSLCARYPEKRFVPDGNRISWDS---KKGFTIPSYMISYAGM   78 (213)
T ss_dssp             -CEEEEECCSTTCEEEECCCBSS-----------TTCCEEEEEETTTEEECCCSSSCEEET---TTEEEEEGGGTTTCSE
T ss_pred             CceEEEEecCCCccEEEeeccCC-----------CCcEEEEEhhcCCCccccCCCcccccC---CccEEEccCChhcCce
Confidence            4478889999  99999988764           3456778775  555554 33333222   1269999999999999


Q ss_pred             EEEEEEeCCeeEE-EEEEEEEecCCCCCCeeeeec-CceeeccCCeEEEEEEEecCC--CcEEEEEECCEecCCCCc-EE
Q psy16863        323 YSVTASNESGYST-AKFELSVESQVPDAPAFIRRL-HDIAVKVGTRARLLVEIRSPT--EIKIHWYRNDRKLEENKI-YR  397 (1075)
Q Consensus       323 Y~C~a~n~~g~~~-~~~~l~V~~~~~~~p~~~~~~-~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~g~~l~~~~~-~~  397 (1075)
                      |+|.|.|..+... ..+.|.|..  ..+|.+...+ ..+.+.+|++++|.|.+.|.|  .+.+.|+|+|..+..... ..
T Consensus        79 Y~C~a~n~~~~~~s~~~~l~v~~--~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~  156 (213)
T 2x1w_L           79 VFCEAKINDESYQSIMYIVVVVG--YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNR  156 (213)
T ss_dssp             EEEEEC----CEECCCEEEEECB--CCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEE
T ss_pred             EEEEEEECCeeEEEEEEEEEEeC--CcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEecc
Confidence            9999998544322 225666643  2345444443 445899999999999998854  468999999987543211 10


Q ss_pred             EEE-------cCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeecCC
Q psy16863        398 TQH-------DGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPK  443 (1075)
Q Consensus       398 ~~~-------~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~  443 (1075)
                      ...       ......|.|.+++.+|+|.|+|.|.|..|....++.|.|..+|
T Consensus       157 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p  209 (213)
T 2x1w_L          157 DLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP  209 (213)
T ss_dssp             EECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC--
T ss_pred             ccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccc
Confidence            100       1123479999999999999999999999999999999998665

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.78  E-value=6.8e-19  Score=180.98  Aligned_cols=170  Identities=18%  Similarity=0.244  Sum_probs=130.6

Q ss_pred             ecCceeeccCCeEEEEEEEecCC----CcEEEEEE----------------CCEecCC-----CCcEEEEE---cCCEEE
Q psy16863        355 RLHDIAVKVGTRARLLVEIRSPT----EIKIHWYR----------------NDRKLEE-----NKIYRTQH---DGNFYF  406 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~~g~p----~~~v~W~k----------------~g~~l~~-----~~~~~~~~---~g~~~~  406 (1075)
                      .+..+.+.+|++++|.|.+.+.+    .+.|.|+|                ++..+..     ..++.+..   ......
T Consensus         6 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~   85 (214)
T 3jz7_A            6 PEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDAS   85 (214)
T ss_dssp             CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCC
T ss_pred             CCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCccc
Confidence            34567889999999999998876    46999998                4444432     33444322   113346


Q ss_pred             EEEcccCCCCceeEEEEEEeCCCceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEE-ECCCCCeEEEEeCC-
Q psy16863        407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKV-MGIPTPQLIWYKDN-  484 (1075)
Q Consensus       407 L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~v~W~~~g-  484 (1075)
                      |.|.+++.+|+|.|+|.|.|..|....++.|.|..+|...  ...  ....+.+|+.+.|.|.+ .|.|.+.|+|++++ 
T Consensus        86 L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~--~~~--~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~  161 (214)
T 3jz7_A           86 INVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGT--RCF--VDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSD  161 (214)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSC--EEE--EESCCBTTCCEEEEEECSBCCSSCEEEEEECST
T ss_pred             EEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCc--eee--eecceecCCcEEEEecCCCCCCCCEEEEEECCC
Confidence            9999999999999999999999988888899998776432  222  12236789999999999 89999999999954 


Q ss_pred             -EeccC-----CCEEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEe
Q psy16863        485 -KKIKA-----GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIAR  528 (1075)
Q Consensus       485 -~~l~~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~  528 (1075)
                       ..+..     .....|.|..+..+|+|.|+|.|.|..|....++.|.|.
T Consensus       162 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  211 (214)
T 3jz7_A          162 SQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV  211 (214)
T ss_dssp             TCCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCB
T ss_pred             CCccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEe
Confidence             44431     123389999999999999999999999999888888775

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.78  E-value=8.7e-19  Score=179.69  Aligned_cols=163  Identities=15%  Similarity=0.145  Sum_probs=117.7

Q ss_pred             eeeeecCCeEEEEEEEecCCCCeEEEEEC--CEEee------------cCCcEEEEEeeCcEEEEEEccccCCCCeEEEE
Q psy16863        757 SCQATVNEEFKFTVQVSISPEPKVSWFRD--DQQVV------------ESDNVKILKETLGVCHLKIHALEVADQAEWKC  822 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~~i~------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C  822 (1075)
                      ...+.+|++++|.|.+.  |.+.+.|+|+  |..+.            ...++.+.. ..+...|.|.+++.+|+|.|+|
T Consensus         9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C   85 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSK-SGNTASLTVSGLQTDDEAVYYC   85 (211)
T ss_dssp             EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-ETTEEEEEEESCCGGGCEEEEE
T ss_pred             eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEc-cCCEEEEEECCCChhHCEEEEE
Confidence            56788999999999998  8899999994  32221            235666654 4567899999999999999999


Q ss_pred             EEEeCCce--EEEEEEEEEEecCCCCCCeeeeec-ceeecCCCeEEEEEEEEccC--CCeeEEEECCEEcCCCC------
Q psy16863        823 IATNDFGQ--SITSCFLKLNVPKHYKKPKFLEEL-KAVLSEGGAVNLECKVIGVP--QPTLKWFKDGRELKAGD------  891 (1075)
Q Consensus       823 ~A~N~~G~--~~~s~~l~V~~~~~~~~p~~~~~~-~~~~~~g~~~~L~C~v~g~p--~p~v~W~k~g~~l~~~~------  891 (1075)
                      .|.|..|.  ......|.|...+ ..+|.+.... ...+.+|+.++|.|.+.|.+  .+.|+|+|||.++..+.      
T Consensus        86 ~~~~~~~~~~~~~~~~l~V~~~~-~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~  164 (211)
T 3tv3_L           86 GSLVGNWDVIFGGGTKLTVLGQP-KAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPS  164 (211)
T ss_dssp             EEEETTTEEEECCCEEEEECCSC-CBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCE
T ss_pred             EEecCCCceeECCCceEEEeCCC-CcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCce
Confidence            99999883  3345667766322 2345554333 22234799999999999863  47899999999986521      


Q ss_pred             -----e----eEEEECCCCceeeEEEEEEEEeCCeeEEEEE
Q psy16863        892 -----I----HKIISGEDGTCCLGIYTCEAHNCMGTTSSSA  923 (1075)
Q Consensus       892 -----~----~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~  923 (1075)
                           .    ..|.+......|+|.|+|.|.|..|....++
T Consensus       165 ~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~  205 (211)
T 3tv3_L          165 KQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  205 (211)
T ss_dssp             ECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEE
T ss_pred             ECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeec
Confidence                 1    1233333334579999999999998876654

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.78  E-value=1.8e-19  Score=184.52  Aligned_cols=167  Identities=20%  Similarity=0.328  Sum_probs=130.2

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEec------------CCCCcEEEEEcCCEEEEEEcccCCCC
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKL------------EENKIYRTQHDGNFYFIDLSSVSLFD  416 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l------------~~~~~~~~~~~g~~~~L~I~~v~~~d  416 (1075)
                      ++.+...+....+.+|+++.|.|.+.+.|.+.+.|+|++..+            ....++....    ..|.|.+++.+|
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~~~~~d   79 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP----TGITFKSVTRED   79 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET----TEEECSCCCTTS
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec----cEEEEeeCCHHH
Confidence            556666778889999999999999999899999999988652            1123333322    469999999999


Q ss_pred             ceeEEEEEEeCCCc--eeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEE-ECCCCCeEEEEeCCEeccCCC--
Q psy16863        417 SGRWTCLAENAVGR--SHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKV-MGIPTPQLIWYKDNKKIKAGD--  491 (1075)
Q Consensus       417 ~G~Y~C~a~n~~g~--~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~v~W~~~g~~l~~~~--  491 (1075)
                      +|.|+|.|.|..|.  ......|.|..+|...  ...  ....+.+|+.+.|.|.+ .|.|.+.+.|++++..+....  
T Consensus        80 ~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~--~~~--~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~  155 (209)
T 1nbq_A           80 TGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKP--TVN--IPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKS  155 (209)
T ss_dssp             CSEEEEEEEETTSSCEECCEEECCEEBCCCCC--CCC--CBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSS
T ss_pred             CcEEEEEEecCCCCccceEEEEEEEecCCcCC--Ccc--cccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCcccc
Confidence            99999999998663  3456677777665432  111  12347889999999997 899999999999999886532  


Q ss_pred             --------------EEEEEeCCCCCCCcEEEEEEEEecceeeEEEE
Q psy16863        492 --------------IFALTANPKDPSSLGTYTCEAVNCMGAAFSTS  523 (1075)
Q Consensus       492 --------------~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  523 (1075)
                                    ...|.|..+..+|+|.|+|.|.|..|....+.
T Consensus       156 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~  201 (209)
T 1nbq_A          156 TRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSN  201 (209)
T ss_dssp             SSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECC
T ss_pred             ceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccc
Confidence                          34789999999999999999999999874443

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.78  E-value=1.4e-18  Score=178.45  Aligned_cols=171  Identities=17%  Similarity=0.285  Sum_probs=128.6

Q ss_pred             eeeeecCceeeccCCeEEEEEEEecCCCcEEEEEEC--CEec------------CCCCcEEEEEcCCEEEEEEcccCCCC
Q psy16863        351 AFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DRKL------------EENKIYRTQHDGNFYFIDLSSVSLFD  416 (1075)
Q Consensus       351 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~l------------~~~~~~~~~~~g~~~~L~I~~v~~~d  416 (1075)
                      .+...+ .+.+.+|++++|.|.+.+.|.+.|.|||.  +..+            ....++.+...+....|.|.+++.+|
T Consensus         3 ~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   81 (213)
T 3mj8_L            3 TLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGD   81 (213)
T ss_dssp             CBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhh
Confidence            344444 77899999999999999889999999992  2211            02346776667777889999999999


Q ss_pred             ceeEEEEEEeCCC---ceeeEEEEEeecCCCCCCCeeeeec-ceEEecCCeEEEEEEEECC-CC-CeEEEEeCCEeccCC
Q psy16863        417 SGRWTCLAENAVG---RSHCSCELSVLVPKAYKAPFFTKEL-EAILTEQGTVSLECKVMGI-PT-PQLIWYKDNKKIKAG  490 (1075)
Q Consensus       417 ~G~Y~C~a~n~~g---~~~~s~~l~V~~~~~~~~p~~~~~~-~~~~~~g~~v~l~C~~~g~-p~-~~v~W~~~g~~l~~~  490 (1075)
                      +|.|+|.|.|..|   .......|.|...+. .+|.+...+ ...+.+|+.++|.|.+.|. |+ +.|+|+|||.++..+
T Consensus        82 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~-~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~  160 (213)
T 3mj8_L           82 EADYYCQSWDGTNSAWVFGSGTKVTVLGQPN-AAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQG  160 (213)
T ss_dssp             CEEEEEEEEETTTTEEEEBCCEEEEEECSCC-BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTT
T ss_pred             CEEEEEEeccCCcceeEEcCceEEEEeCCCC-CCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCC
Confidence            9999999999988   345567788874332 344444333 2234479999999999985 44 399999999998642


Q ss_pred             ----------CEE----EEEeCCCCCCCcEEEEEEEEecceeeEEEE
Q psy16863        491 ----------DIF----ALTANPKDPSSLGTYTCEAVNCMGAAFSTS  523 (1075)
Q Consensus       491 ----------~~~----~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  523 (1075)
                                ..+    .|.|..+..+|+|.|+|.|.|..+....++
T Consensus       161 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  207 (213)
T 3mj8_L          161 VKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSL  207 (213)
T ss_dssp             EEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEE
T ss_pred             cccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeee
Confidence                      222    478888888999999999999987665543

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.78  E-value=2.3e-18  Score=176.62  Aligned_cols=166  Identities=13%  Similarity=0.114  Sum_probs=115.9

Q ss_pred             cceeeeecCCeEEEEEEEecCC---CCeEEEEECC--EEe------------ecCCcEEEEEeeCcEEEEEEccccCCCC
Q psy16863        755 LKSCQATVNEEFKFTVQVSISP---EPKVSWFRDD--QQV------------VESDNVKILKETLGVCHLKIHALEVADQ  817 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p---~p~v~W~k~g--~~i------------~~~~~~~~~~~~~~~~~L~I~~~~~~D~  817 (1075)
                      +....+.+|+++.|.|.+.+.|   .+.|.|+|++  ..+            ....++.+.. ..+...|.|.+++.+|+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~   85 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL-IGDKAALTITGAQTEDE   85 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCGGGC
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEe-eCCEEEEEECCCCccCC
Confidence            5667799999999999999987   4799999963  332            1134666544 44577999999999999


Q ss_pred             eEEEEEEEeCCceEE-EEEEEEEEecCCCCCCeeeeec-ceeecCCCeEEEEEEEEccCCC--eeEEEECCEEcCCCCe-
Q psy16863        818 AEWKCIATNDFGQSI-TSCFLKLNVPKHYKKPKFLEEL-KAVLSEGGAVNLECKVIGVPQP--TLKWFKDGRELKAGDI-  892 (1075)
Q Consensus       818 G~Y~C~A~N~~G~~~-~s~~l~V~~~~~~~~p~~~~~~-~~~~~~g~~~~L~C~v~g~p~p--~v~W~k~g~~l~~~~~-  892 (1075)
                      |.|+|.|.|..|... ....|.|...+ ..+|.+.... ...+..|+.++|.|.+.|.|++  .|+|+|||.++..+.. 
T Consensus        86 G~Y~C~~~~~~~~~~~~~~~l~V~~~~-~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~  164 (212)
T 1q0x_L           86 AIYFCALWSNNKLVFGGGTKLTVLGQP-KSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMET  164 (212)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEECCSC-CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE
T ss_pred             EEEEEEEecCchhhcCCCeEEEEecCC-CCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeec
Confidence            999999999877432 23455554322 1345554322 2223478899999999986544  8999999999865421 


Q ss_pred             --------------eEEEECCCCceeeEEEEEEEEeCCeeEEEE
Q psy16863        893 --------------HKIISGEDGTCCLGIYTCEAHNCMGTTSSS  922 (1075)
Q Consensus       893 --------------~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~  922 (1075)
                                    ..|.+......|+|.|+|.|.|..+....+
T Consensus       165 ~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~  208 (212)
T 1q0x_L          165 TQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKT  208 (212)
T ss_dssp             CCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEE
T ss_pred             CCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeee
Confidence                          122233333357899999999998765443

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.78  E-value=1.8e-18  Score=177.10  Aligned_cols=162  Identities=17%  Similarity=0.227  Sum_probs=116.5

Q ss_pred             cceeeeecCCeEEEEEEEecCCCCeEEEEEC--CEEe------------ecCCcEEEEEeeCcEEEEEEccccCCCCeEE
Q psy16863        755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQQV------------VESDNVKILKETLGVCHLKIHALEVADQAEW  820 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~~i------------~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y  820 (1075)
                      +....+.+|++++|.|.+.+.|.+.|.|||+  |..+            ....++.+.. ..+.+.|.|.+++.+|+|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y   85 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG-SGTDFTLTIDPVEADDTAIY   85 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCGGGCEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEe-cCCEEEEEECCCCHHHCeEE
Confidence            5567799999999999999999999999994  2222            1125666654 44577999999999999999


Q ss_pred             EEEEEeCCceEEE-EEEEEEEecCCCCCCeeeeec-ceeecCCCeEEEEEEEEcc-CCC-eeEEEECCEEcCCC-C----
Q psy16863        821 KCIATNDFGQSIT-SCFLKLNVPKHYKKPKFLEEL-KAVLSEGGAVNLECKVIGV-PQP-TLKWFKDGRELKAG-D----  891 (1075)
Q Consensus       821 ~C~A~N~~G~~~~-s~~l~V~~~~~~~~p~~~~~~-~~~~~~g~~~~L~C~v~g~-p~p-~v~W~k~g~~l~~~-~----  891 (1075)
                      +|.|.|..|.... ...|.|..+.  .+|.+.... ...+.+|+.++|.|.+.|. |.+ .|+|+|||.++..+ .    
T Consensus        86 ~C~~~~~~~~~~~~~~~l~V~~~~--~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~  163 (210)
T 1lk3_L           86 FCQQSWNGPLTFGAGTKLELKRAD--AAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVT  163 (210)
T ss_dssp             EEEECSSSSCEECCCEEEEECCCC--BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEEC
T ss_pred             EEEEEcCCCceeCCCEEEEEcCCC--cCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccC
Confidence            9999998875432 3456665422  245544322 2223479999999999984 443 89999999998755 1    


Q ss_pred             -------ee----EEEECCCCceeeEEEEEEEEeCCeeE
Q psy16863        892 -------IH----KIISGEDGTCCLGIYTCEAHNCMGTT  919 (1075)
Q Consensus       892 -------~~----~i~~~~~~~~d~G~Y~C~a~N~~G~~  919 (1075)
                             .+    .|.+......|+|.|+|.|.|.....
T Consensus       164 ~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (210)
T 1lk3_L          164 DQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS  202 (210)
T ss_dssp             CCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             CccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence                   11    34444444568999999999987643

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.78  E-value=1.4e-18  Score=180.89  Aligned_cols=180  Identities=14%  Similarity=0.097  Sum_probs=127.7

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .+|.|...+.. .+..|++++|.|.+.+ +.+.+.|+|+|..+.......  ........|.|.+++.+|+|.|+|.|.|
T Consensus         6 ~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~--~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   81 (242)
T 1p6f_A            6 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKP--PERINKVKFYIPDMNSRMAGQYSCIYRV   81 (242)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSS--CTTCCEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccc--cCCcceeEEEecCCCcccCeEEEEEEec
Confidence            57777766665 7899999999999875 456999999998775211000  0112345899999999999999999999


Q ss_pred             CCceEE--EEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCCeeEEEECCEEcC-----CCCeeEEEECC
Q psy16863        827 DFGQSI--TSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELK-----AGDIHKIISGE  899 (1075)
Q Consensus       827 ~~G~~~--~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~-----~~~~~~i~~~~  899 (1075)
                      ..|...  ..+.|.|..  .+.+|.+.......+.+|+.++|.|.+.+. .+.+.|+|||..+.     ......|.+..
T Consensus        82 ~~~~s~~S~~~~L~V~~--~~~~P~i~~~p~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~l~I~~  158 (242)
T 1p6f_A           82 GELWSEPSNLLDLVVTE--MYDTPTLSVHPGPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQRGYGKVQAEFPLGP  158 (242)
T ss_dssp             TTEECCCCCCEEEEEEC--CSCCCEEEEESCSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEEEEEECSSEEEEEEEE
T ss_pred             CCccccCCcceEEEeec--ccCCCceEccCCCccCCCCcEEEEEecCCC-CCEEEEEECCCccCccccCCCceEEEEeCC
Confidence            766433  245555553  234566655444567899999999998764 56999999997664     34456677777


Q ss_pred             CCceeeEEEEEEEEeCC--e-eEEEEEEEEEecCChh
Q psy16863        900 DGTCCLGIYTCEAHNCM--G-TTSSSAALLGFEDKSQ  933 (1075)
Q Consensus       900 ~~~~d~G~Y~C~a~N~~--G-~~~~~~~l~v~~~~~~  933 (1075)
                      ....|+|.|+|.|.|..  + ..+....|.|.+....
T Consensus       159 v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~~~  195 (242)
T 1p6f_A          159 VTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIEN  195 (242)
T ss_dssp             CCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC----
T ss_pred             CccccCEEEEEEEECCCCcccCCCCCEEEEEeccCCC
Confidence            88889999999999974  2 3344567777665443

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.77  E-value=6.6e-19  Score=172.64  Aligned_cols=152  Identities=20%  Similarity=0.238  Sum_probs=114.5

Q ss_pred             eeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecC------------CcEEEEEeeCcEEEEEEccccCCCCeEEEEEE
Q psy16863        757 SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVES------------DNVKILKETLGVCHLKIHALEVADQAEWKCIA  824 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~------------~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A  824 (1075)
                      .+.+..|++++|.|.+. .|.+.|.|+|++..|...            .++.+.   .....|.|.+++.+|+|.|+|.|
T Consensus         4 ~v~~~~G~~VtL~c~~~-~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~---~~~~sL~I~~v~~~DsG~Y~C~~   79 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLD---TVSGSLTIYNLTSSDEDEYEMES   79 (171)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEEC---TTTCCEEECSCCGGGCEEEEEEC
T ss_pred             EEEEEcCCCEEEcCCCC-CCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEe---CCCCeEEECCCChhhCceEEEEE
Confidence            45688999999999995 488999999998755321            122221   12237999999999999999999


Q ss_pred             EeCCceEEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCCeeEEEECCEEcCCCCeeEEEECCCCcee
Q psy16863        825 TNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC  904 (1075)
Q Consensus       825 ~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~~~i~~~~~~~~d  904 (1075)
                      .|..|  ...+.|.|..++  ..|.+.....     .  .+|.|.+.|.|.|.|+|+|||..|..+....+....  ..|
T Consensus        80 ~n~~~--~~~~~L~V~~~~--~~p~i~~~~~-----~--~~L~C~~~~~p~p~i~W~~~~~~l~~~~~~~l~~~~--~~~  146 (171)
T 1ccz_A           80 PNITD--TMKFFLYVLEMV--SKPMIYWECS-----N--ATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQW--TNL  146 (171)
T ss_dssp             TTCCS--CEEEEEEEECCC--CCCEEEEETT-----T--TEEEEECSSCSSCEEEEEETTEEEEEESSSEEEEEC--SCC
T ss_pred             eCCCC--cEEEEEEEECcC--CCCEEEEecC-----C--cEEEEEeCCCCCcEEEEEECCEECcCCcceEEEEec--cCC
Confidence            99988  457778887653  3454432221     1  379999999999999999999998766555554432  456


Q ss_pred             eEEEEEEEEeCCeeEEEEEEE
Q psy16863        905 LGIYTCEAHNCMGTTSSSAAL  925 (1075)
Q Consensus       905 ~G~Y~C~a~N~~G~~~~~~~l  925 (1075)
                      +|.|+|.|.|.+|..++.+.|
T Consensus       147 ~g~Y~C~a~N~~~~~~~~~~l  167 (171)
T 1ccz_A          147 RAPFKCKAVNRVSQESEMEVV  167 (171)
T ss_dssp             SSCEEEEEEETTEEEEEEECC
T ss_pred             CceEEEEEEcccCcccceeEE
Confidence            899999999999998877655

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.77  E-value=9.2e-19  Score=185.03  Aligned_cols=248  Identities=15%  Similarity=0.164  Sum_probs=102.5

Q ss_pred             eeeecCCeEEEEEEEecCCCCe-EEEEE--CCEEc-CCCC---eEEEeecCCCceEEEEEEecCceEEEEEEEEEEeccc
Q psy16863        660 AVMTDDGLVSFECKVVGFPTPT-LQWFK--DNEEL-KPGD---VYQLTGTSSLGSYCCVAKNVMGKAESSTQLTIEDIRN  732 (1075)
Q Consensus       660 ~~~~~g~~~~l~C~v~g~p~p~-v~W~k--~g~~l-~~~~---~~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~  732 (1075)
                      ..+.+|+++.|.|.+.. +.|. +.|.-  .+..+ ..|.   .+.+....+.|.|+|.+....-..+..+.|.|...+ 
T Consensus         9 ~~V~~G~sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~~g~~~~~~~l~~v~~~~~y~C~~~~~~~~~~~~v~l~V~~~P-   86 (291)
T 1mq8_A            9 VILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTP-   86 (291)
T ss_dssp             EEECTTCEEEEEEEECC-SSCSEEEEECSSCCCCCCCSCSSEEEEEEESCCSCCCCEEEEECSSCEEEEECEEEECBCC-
T ss_pred             cEEcCCCeEEEEEeCCC-CCCccceEEecCCCcccccCCCceEEEEEEecccCCeEEEEEEcCCccEEEEEEEEEecCC-
Confidence            35778999999999964 5554 88863  22223 2333   366666666688999996433334445566665321 


Q ss_pred             cCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecCCCC---eEEEEECCEEeecCCcEEEEEeeCcEEEEEE
Q psy16863        733 HLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEP---KVSWFRDDQQVVESDNVKILKETLGVCHLKI  809 (1075)
Q Consensus       733 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p---~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I  809 (1075)
                                    ..|.+.  +....+.+|+.++|+|.+.|.+++   +|+|||+++.+......    .......|.|
T Consensus        87 --------------~~v~I~--~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~----~~~~~~~l~~  146 (291)
T 1mq8_A           87 --------------ERVELA--PLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV----GEPAEVTTTV  146 (291)
T ss_dssp             --------------SCCCBC--CCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECC----BTTEEEEEEC
T ss_pred             --------------CCCEEe--cCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCC----CCCceEEEEe
Confidence                          112211  222347889999999999986443   69999999888643211    1223456777


Q ss_pred             ccccCCCCeEEEEEEEeCCce--------EEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCC---ee
Q psy16863        810 HALEVADQAEWKCIATNDFGQ--------SITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQP---TL  878 (1075)
Q Consensus       810 ~~~~~~D~G~Y~C~A~N~~G~--------~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p---~v  878 (1075)
                      .....+|.+.|+|+|.|.++.        .+....|.|.++|.. .+.... . ..+.+|+.++|+|.+.|.|++   .|
T Consensus       147 ~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~-~~~~~~-p-~~l~eG~~v~l~C~~~g~~P~~~~~v  223 (291)
T 1mq8_A          147 LVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPAT-PPQLVS-P-RVLEVDTQGTVVCSLDGLFPVSEAQV  223 (291)
T ss_dssp             CCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC------------------------------------------
T ss_pred             eeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCC-CceecC-C-cCccCCCeEEEEEEcCCCCCCcccEE
Confidence            777788888999999998773        233467777766422 122111 1 146789999999999998665   59


Q ss_pred             EEEECCEEcCC-----CCeeEEEECC-CCc--eeeEEEEEEEEeCCeeEEEEEEEEEecCCh
Q psy16863        879 KWFKDGRELKA-----GDIHKIISGE-DGT--CCLGIYTCEAHNCMGTTSSSAALLGFEDKS  932 (1075)
Q Consensus       879 ~W~k~g~~l~~-----~~~~~i~~~~-~~~--~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~~  932 (1075)
                      .|+++|+.+..     |+...+.... ...  .+.+.|+|.|.|...+.++.-.|.|++.|.
T Consensus       224 ~w~~~g~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~~~  285 (291)
T 1mq8_A          224 HLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPA  285 (291)
T ss_dssp             --------------------------------------------------------------
T ss_pred             EEEECCEecCceeeecCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcCCC
Confidence            99999998863     2322221111 112  235777888888555566677777776443

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.77  E-value=4.3e-19  Score=179.97  Aligned_cols=143  Identities=12%  Similarity=0.201  Sum_probs=102.4

Q ss_pred             eecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863        760 ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKL  839 (1075)
Q Consensus       760 ~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V  839 (1075)
                      +..|++++|.|.+   |.|.|+|+|||.++....        .....|.|.+++.+|+|.|+|.|.|..+.   ...|.|
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~~--------~~~~~L~i~~v~~~DsG~Y~C~~~~~~s~---~~~v~v   80 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFLT--------EDKKKWNLGSNAKDPRGMYQCKGSQNKSK---PLQVYY   80 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEEEEEE--------SSCCCEEEEEGGGCCEEEEEEESSSSCCC---CEEEEE
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEECCCCC--------CCCCeEEeCCCCcCCCEEEEEEecCCCCe---eEEEEE
Confidence            4689999999998   889999999999886431        11237999999999999999998664322   233444


Q ss_pred             Ee------c-------------------C-CCCCCeeeeecceeecCCCeEEEEEEEEccCCCeeEEEECCEEcCCC---
Q psy16863        840 NV------P-------------------K-HYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAG---  890 (1075)
Q Consensus       840 ~~------~-------------------~-~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~---  890 (1075)
                      ..      +                   . ....+.+......+..+|++++|.|.  |.|.|.|+|+|||..+...   
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~  158 (204)
T 1sy6_A           81 RMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDD  158 (204)
T ss_dssp             EC------------------------------------CCCCEEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTTC
T ss_pred             EEeccccccccccccccccccccccccccccccccceecCCceeeecCCcEEEEcC--CCCCCceEEEECCEECCCccCC
Confidence            30      0                   0 00112222222222338999999999  8999999999999988643   


Q ss_pred             -----CeeEEEECCC-CceeeEEEEEEEEeCCee
Q psy16863        891 -----DIHKIISGED-GTCCLGIYTCEAHNCMGT  918 (1075)
Q Consensus       891 -----~~~~i~~~~~-~~~d~G~Y~C~a~N~~G~  918 (1075)
                           ....|.+... ...|+|.|+|.|.|..|.
T Consensus       159 ~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~  192 (204)
T 1sy6_A          159 KNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPE  192 (204)
T ss_dssp             TTEEEETTEEEETTCCHHHHCEEEEEEETTSCGG
T ss_pred             ceEecCCCEEEEeeCCccccCEEEEEEeccCCCC
Confidence                 1235777888 889999999999999996

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.77  E-value=9.4e-18  Score=176.72  Aligned_cols=165  Identities=13%  Similarity=0.255  Sum_probs=119.5

Q ss_pred             ceeeeecCCeEEEEEEEecCC--CCeEEEEECC--EEe-----------------ecCCcEEEEEe-eCcEEEEEEcccc
Q psy16863        756 KSCQATVNEEFKFTVQVSISP--EPKVSWFRDD--QQV-----------------VESDNVKILKE-TLGVCHLKIHALE  813 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g~p--~p~v~W~k~g--~~i-----------------~~~~~~~~~~~-~~~~~~L~I~~~~  813 (1075)
                      ....+.+|++++|.|.+.|.|  .+.|.|+|++  ..+                 ....++.+..+ ..+...|.|.+++
T Consensus        10 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   89 (247)
T 2ghw_B           10 GGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLR   89 (247)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCC
Confidence            346788999999999999987  6889999942  111                 01346766554 2457789999999


Q ss_pred             CCCCeEEEEEEEeCCceEE--EEEEEEEEecCC----------CCCCeeeeecce-eecCCCeEEEEEEEEccCCCeeEE
Q psy16863        814 VADQAEWKCIATNDFGQSI--TSCFLKLNVPKH----------YKKPKFLEELKA-VLSEGGAVNLECKVIGVPQPTLKW  880 (1075)
Q Consensus       814 ~~D~G~Y~C~A~N~~G~~~--~s~~l~V~~~~~----------~~~p~~~~~~~~-~~~~g~~~~L~C~v~g~p~p~v~W  880 (1075)
                      .+|+|.|+|.|.|..+...  ..+.|.|..++.          ..++.+...... .+.+|++++|.|.+.|.|.|.|+|
T Consensus        90 ~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W  169 (247)
T 2ghw_B           90 AEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNLAW  169 (247)
T ss_dssp             GGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCEEE
T ss_pred             HHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceEEE
Confidence            9999999999999844322  234666665421          223445444433 378999999999999999999999


Q ss_pred             EE--CCEEcC---------------------CCCeeEEEECCCCceeeEEEEEEEEeCCeeEE
Q psy16863        881 FK--DGRELK---------------------AGDIHKIISGEDGTCCLGIYTCEAHNCMGTTS  920 (1075)
Q Consensus       881 ~k--~g~~l~---------------------~~~~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~  920 (1075)
                      ||  +|..+.                     .+....|.+......|+|.|+|.|.|..+...
T Consensus       170 ~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~  232 (247)
T 2ghw_B          170 YQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTF  232 (247)
T ss_dssp             EEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEE
T ss_pred             EEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceE
Confidence            99  665431                     12234677888888999999999999654443

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.77  E-value=8.2e-19  Score=175.41  Aligned_cols=159  Identities=16%  Similarity=0.203  Sum_probs=124.1

Q ss_pred             ceeeccCCeEEEEEEEecCCCcEEEEEECCEe--cCC------------CCcEEEEE---cCCEEEEEEcccCCCCceeE
Q psy16863        358 DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRK--LEE------------NKIYRTQH---DGNFYFIDLSSVSLFDSGRW  420 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~--l~~------------~~~~~~~~---~g~~~~L~I~~v~~~d~G~Y  420 (1075)
                      .+.+.+|++++|.|.+.+.|.+.+.|+|++..  +..            ..++....   ......|.|.+++.+|+|.|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   83 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   83 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence            45788999999999998888899999999863  211            12232221   22234599999999999999


Q ss_pred             EEEEEeCCCceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccCCCEEEEEeCCC
Q psy16863        421 TCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPK  500 (1075)
Q Consensus       421 ~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~~~~l~i~~~  500 (1075)
                      +|.+.|..|    .+.|.|...        ..+....+.+|+.+.|.|.+.+.|.+.++|++++..+.. ....|.|..+
T Consensus        84 ~C~~~~~~~----~~~l~V~~~--------~~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~L~i~~v  150 (184)
T 2ny1_B           84 ICEVEDQKE----EVQLLVFGL--------TANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ-GGKTLSVSQL  150 (184)
T ss_dssp             EEEETTEEE----EEEEEEEEE--------EESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEEE-ESSEEEESSC
T ss_pred             EEEEEcCCC----cEEEEEEEe--------cCCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcccc-CceEEEEecC
Confidence            999987644    445655521        122233578999999999999999999999999887643 3357999999


Q ss_pred             CCCCcEEEEEEEEecceeeEEEEEEEEec
Q psy16863        501 DPSSLGTYTCEAVNCMGAAFSTSRVIARG  529 (1075)
Q Consensus       501 ~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~  529 (1075)
                      ..+|+|.|+|.|.|..|....++.|.|.+
T Consensus       151 ~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~  179 (184)
T 2ny1_B          151 ELQDSGTWTCTVLQNQKKVEFKIDIVVLA  179 (184)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CcCCCeEEEEEEEECCceEEEEEEEEEEe
Confidence            99999999999999999999999999875

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.76  E-value=1.3e-18  Score=185.96  Aligned_cols=182  Identities=15%  Similarity=0.187  Sum_probs=123.1

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEe---cCCCCeEEEEECCEEeecC------------------CcEEEEEe-eCcEE
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVS---ISPEPKVSWFRDDQQVVES------------------DNVKILKE-TLGVC  805 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~---g~p~p~v~W~k~g~~i~~~------------------~~~~~~~~-~~~~~  805 (1075)
                      .+.+...+....+.+|+++.|.|.+.   +.|.+.|.|+|++......                  .++.+... ..+..
T Consensus         5 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   84 (268)
T 3mj6_A            5 LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDG   84 (268)
T ss_dssp             -------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBC
T ss_pred             ccccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEE
Confidence            34455556677899999999999998   7788899999966422111                  22322110 11235


Q ss_pred             EEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEE---EccCCCeeEEEE
Q psy16863        806 HLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKV---IGVPQPTLKWFK  882 (1075)
Q Consensus       806 ~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v---~g~p~p~v~W~k  882 (1075)
                      .|.|.+++.+|+|.|+|.|.|..+....+..+.|.+.+.  .|.     ...+.+|+.++|.|.+   .+.|.|.|+|+|
T Consensus        85 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~--~p~-----~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~  157 (268)
T 3mj6_A           85 SLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPE--EPR-----DLRVRVGDTTQMRCSIQSTEEKRVTKVNWMF  157 (268)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECC--CCS-----EEEEETTCCEEECCBCEESSSSCCCEEEEEE
T ss_pred             EEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEecc--CCC-----ccccccCCcEEEEEEecCCCCCCccceEEEe
Confidence            799999999999999999999877655555555554322  222     2336789999999999   577999999999


Q ss_pred             C-CEEcCC--------------------------------CCeeEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEec
Q psy16863        883 D-GRELKA--------------------------------GDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFE  929 (1075)
Q Consensus       883 ~-g~~l~~--------------------------------~~~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~  929 (1075)
                      + |..+..                                .....|.+......|+|.|+|.|.|..|..+.++.|.|..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~  237 (268)
T 3mj6_A          158 SSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ  237 (268)
T ss_dssp             ECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             cCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEc
Confidence            3 321100                                1234567777888999999999999999999999999976


Q ss_pred             CChhhhh
Q psy16863        930 DKSQIEK  936 (1075)
Q Consensus       930 ~~~~~~~  936 (1075)
                      .++.+..
T Consensus       238 ~~p~~~~  244 (268)
T 3mj6_A          238 DEFQRTI  244 (268)
T ss_dssp             C------
T ss_pred             CCCeeee
Confidence            6555443

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.76  E-value=1.7e-15  Score=186.26  Aligned_cols=419  Identities=13%  Similarity=0.127  Sum_probs=241.0

Q ss_pred             ccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEccc-CCCCceeEEEEEEeCCCceeeEEEEEee
Q psy16863        362 KVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSV-SLFDSGRWTCLAENAVGRSHCSCELSVL  440 (1075)
Q Consensus       362 ~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v-~~~d~G~Y~C~a~n~~g~~~~s~~l~V~  440 (1075)
                      ..+..+.|.|.+.|.|.+.+.|.|+|..+....+         ..+.|..+ ....++.|.|.+.|..|.... ..+.+.
T Consensus        89 ~~~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~~---------~~~~i~~~~~~~~~l~~~~va~~~~G~~~~-~~v~~~  158 (731)
T 2v5y_A           89 SPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNR---------AELAISTFWPNFYQVIFEVITSGHQGYLAI-DEVKVL  158 (731)
T ss_dssp             SCSEEEEEEEEETTCCCCSEEEEECCCCCSSCEE---------EEEEECCCTTSCEEEEEEEEECSSCCEEEE-CCBEEE
T ss_pred             CCcceEEEEEecCCCCccceeEEEeCCcCCceeE---------EEEEEeecCCCceEEEEEEEecCCceEEEE-eeEEee
Confidence            3345899999999999999999999987643222         12445544 233357888888887776542 223343


Q ss_pred             cCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCCeEE-EE--eCCEeccCCC---------EEEEEeCCCCCCCcEEE
Q psy16863        441 VPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLI-WY--KDNKKIKAGD---------IFALTANPKDPSSLGTY  508 (1075)
Q Consensus       441 ~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~-W~--~~g~~l~~~~---------~~~l~i~~~~~~d~G~Y  508 (1075)
                      ..+...+|.+.......+.+|+++.|.|.+.|.|.|.+. |+  +||..+....         ...|.|..+...|+|.|
T Consensus       159 ~~~~~~~p~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y  238 (731)
T 2v5y_A          159 GHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKY  238 (731)
T ss_dssp             SSCCSSSCEECCCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEE
T ss_pred             ecccccccccccccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEE
Confidence            333345566665444558899999999999999999888 88  7887764321         34799999999999999


Q ss_pred             EEEEEeccee-eEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEecCC--CC---ce
Q psy16863        509 TCEAVNCMGA-AFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPP--WP---RS  582 (1075)
Q Consensus       509 ~C~a~n~~g~-~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p--~p---~~  582 (1075)
                      +|.|.|..|. ....+.|.|..++.                    ....+... ......+.|.|.....+  .+   ..
T Consensus       239 ~c~A~n~~G~~~s~~~~l~V~~~P~--------------------~~~~p~~~-~~~~~~v~l~w~~~~~~g~~~i~~Y~  297 (731)
T 2v5y_A          239 RCMIRTEGGVGISNYAELVVKEPPV--------------------PIAPPQLA-SVGATYLWIQLNANSINGDGPIVARE  297 (731)
T ss_dssp             EEEEEETTEEEECCCEEEEEECCCC--------------------BSSCCEEE-EECSSCEEEECCCSSBSSCSCCCEEE
T ss_pred             EEEEECCCCCcceeeEEEEEecCCC--------------------CCCCccee-ccCCceEEEEeCCcccCCCCccEEEE
Confidence            9999999998 66667788864221                    11111111 22356788888764321  12   14


Q ss_pred             EEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEE--CCCCceeeeeEEEEEeCCC--CcCCCceeecc
Q psy16863        583 IYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVAT--SSSGVKQFSAAYVHVLMPK--NYRKPRFVESL  658 (1075)
Q Consensus       583 v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~--n~~g~~~~~~~~l~v~~p~--~~~~p~~~~~~  658 (1075)
                      +.|...+.      .+...... ....+.|.++...+.+.|+|.|.  |..|....+.. +.+..+.  ...+|..+   
T Consensus       298 v~~~~~~~------~~~~~~~~-~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~-~~~~t~~~~p~~~P~~~---  366 (731)
T 2v5y_A          298 VEYCTASG------SWNDRQPV-DSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPA-LRTRTKCADPMRGPRKL---  366 (731)
T ss_dssp             EEEEESSS------SCEEEEEC-CSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCC-EEEECCCCCCSCCCEEE---
T ss_pred             EEEEECCC------CceEEecc-CcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCc-EEeeecCCCCCCCCcee---
Confidence            56655432      22222222 12478999999999999999999  99998764332 3333221  11233221   


Q ss_pred             ceeeecCCeEEEEEEEecC-----CC--CeEEEEECC--E-------Ec---CCCCeEEEeecCCC--ceEEEEEEecCc
Q psy16863        659 KAVMTDDGLVSFECKVVGF-----PT--PTLQWFKDN--E-------EL---KPGDVYQLTGTSSL--GSYCCVAKNVMG  717 (1075)
Q Consensus       659 ~~~~~~g~~~~l~C~v~g~-----p~--p~v~W~k~g--~-------~l---~~~~~~~~~~~~d~--G~Y~C~a~N~~g  717 (1075)
                      .........+.|....-..     +.  -.|.|...+  .       .+   .....+.+.+....  ..|++.|.|..|
T Consensus       367 ~~~~~~~~sv~l~W~~p~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G  446 (731)
T 2v5y_A          367 EVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEG  446 (731)
T ss_dssp             EEEEECSSCEEEEEECCCHHHHCSSSCEEEEEEEEESSSSEEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSC
T ss_pred             EEEeccCCeEEEEEECCCcccccceeeeEEEEEEEccCCCCccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCC
Confidence            1112233456666654211     11  124444321  0       01   12234566555443  455778999999


Q ss_pred             eEEEEEEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeee-cCCeEEEEEEEecCCCC-----eEEEEECCEE---
Q psy16863        718 KAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQAT-VNEEFKFTVQVSISPEP-----KVSWFRDDQQ---  788 (1075)
Q Consensus       718 ~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~g~~~~l~C~v~g~p~p-----~v~W~k~g~~---  788 (1075)
                      ... +..+.+.....               +|.-... ....+. ....+.|.-.....+..     .|.|...+..   
T Consensus       447 ~s~-S~~~~~~T~~~---------------~P~~p~~-~~~~~~~~~~si~l~W~~P~~~~g~i~~Y~V~~~~~~~~~~~  509 (731)
T 2v5y_A          447 RKE-SQELIVQTDED---------------LPGAVPT-ESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPE  509 (731)
T ss_dssp             EEE-CCCEEEECCCC---------------CCCCCCT-TTCEEEEETTEEEEECCCCSCCSSCCCEEEEEEEEEEECC--
T ss_pred             CCC-CceEEEEccCC---------------CCCCCCc-ceEEeeecCCeEEEEEcCCCCCCCCccceEEEEEECcCCCcc
Confidence            864 55555543211               1111000 011111 23455555443221111     2333332211   


Q ss_pred             eec-CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEe
Q psy16863        789 VVE-SDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV  841 (1075)
Q Consensus       789 i~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~  841 (1075)
                      +.. .....+.. ......++|.++.+.-...|+..|.|..|....+ .+.+..
T Consensus       510 ~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s-~~~~~T  561 (731)
T 2v5y_A          510 IDLSNQSGRVSK-LGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPA-TNQFTT  561 (731)
T ss_dssp             -CCCCCEEEEEE-ETTCCEEEECSCCTTEEEEEEEEEEETTEEEEEE-EEEEEC
T ss_pred             ccccCcceEEee-cCCcceEEecCCCCCCEEEEEEEEEeCCccCCCc-ccEEEc
Confidence            000 11111221 2223478999999999999999999999987665 344443

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.76  E-value=2.2e-18  Score=177.73  Aligned_cols=168  Identities=17%  Similarity=0.242  Sum_probs=117.1

Q ss_pred             ceeeeecCCeEEEEEEEecCC--CCeEEEEEC--CEEee-----------------cCCcEEEEEee-CcEEEEEEcccc
Q psy16863        756 KSCQATVNEEFKFTVQVSISP--EPKVSWFRD--DQQVV-----------------ESDNVKILKET-LGVCHLKIHALE  813 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~i~-----------------~~~~~~~~~~~-~~~~~L~I~~~~  813 (1075)
                      ....+.+|++++|.|.+.+.|  .+.+.|+|+  |..+.                 ...++.+..+. .+...|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (219)
T 1c1e_H            8 GPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLK   87 (219)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCC
T ss_pred             CCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCC
Confidence            345688999999999999876  689999997  43321                 13466665432 346789999999


Q ss_pred             CCCCeEEEEEEEeCCceE--E--EEEEEEEEecCCCCCCeeee-ecceeecCCCeEEEEEEEEc-cCCC-eeEEEECCEE
Q psy16863        814 VADQAEWKCIATNDFGQS--I--TSCFLKLNVPKHYKKPKFLE-ELKAVLSEGGAVNLECKVIG-VPQP-TLKWFKDGRE  886 (1075)
Q Consensus       814 ~~D~G~Y~C~A~N~~G~~--~--~s~~l~V~~~~~~~~p~~~~-~~~~~~~~g~~~~L~C~v~g-~p~p-~v~W~k~g~~  886 (1075)
                      .+|+|.|+|.|.|..|..  .  ..+.|.|...+ ..+|.+.. .....+.+|+.++|.|.+.| .|.| .|+|+|||..
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~-~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~  166 (219)
T 1c1e_H           88 NEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAK-TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS  166 (219)
T ss_dssp             GGGCEEEEEEEEETTTTEEEEECCCEEEEECCCC-CBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             cccCEEEEEEEeccCcccceeecCceEEEEecCC-CCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCCcc
Confidence            999999999999987422  1  24566666532 23344432 22223568999999999999 8998 9999999986


Q ss_pred             cCC--------CCe----eEEEECCCCceeeEEEEEEEEeCCeeEEEEEEE
Q psy16863        887 LKA--------GDI----HKIISGEDGTCCLGIYTCEAHNCMGTTSSSAAL  925 (1075)
Q Consensus       887 l~~--------~~~----~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l  925 (1075)
                      +..        +..    ..|.+... ..|.|.|+|.|.|..|.......|
T Consensus       167 ~~~~~~~~~~~~~~~~~~s~L~i~~~-~~d~g~Y~C~a~n~~~~~~~~~~i  216 (219)
T 1c1e_H          167 SGVHTFPAVLQSDLYTLSSSVTVPSS-PRPSETVTCNVAHPASSTKVDKKI  216 (219)
T ss_dssp             TTEEECCCEESSSCEEEEEEEEEESS-STTTSCCEEEEEEGGGTEEEEEEC
T ss_pred             cceEecCCcccCCeEEEEEEEEEecc-cCCCCEEEEEEEeCCCCccEEEec
Confidence            421        111    13444222 235699999999999987655544

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.76  E-value=3.6e-18  Score=180.85  Aligned_cols=160  Identities=19%  Similarity=0.217  Sum_probs=116.3

Q ss_pred             eeeeecCCeEEEEEEEecCC--CCeEEEEEC--CEE---ee-------------cCCcEEEEEe-eCcEEEEEEccccCC
Q psy16863        757 SCQATVNEEFKFTVQVSISP--EPKVSWFRD--DQQ---VV-------------ESDNVKILKE-TLGVCHLKIHALEVA  815 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~---i~-------------~~~~~~~~~~-~~~~~~L~I~~~~~~  815 (1075)
                      ...+.+|++++|.|.+.|.|  .+.|.|+|+  |..   +.             ...++.+..+ ..+...|+|.+++.+
T Consensus         9 ~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   88 (257)
T 1f3r_B            9 PGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTD   88 (257)
T ss_dssp             CSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTT
T ss_pred             CccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCcc
Confidence            45688999999999999985  789999996  221   11             1356776554 245779999999999


Q ss_pred             CCeEEEEEEEeCCc-------eEE--EEEEEEEEecCC----------CCCCeeeeecce-eecCCCeEEEEEEEEccCC
Q psy16863        816 DQAEWKCIATNDFG-------QSI--TSCFLKLNVPKH----------YKKPKFLEELKA-VLSEGGAVNLECKVIGVPQ  875 (1075)
Q Consensus       816 D~G~Y~C~A~N~~G-------~~~--~s~~l~V~~~~~----------~~~p~~~~~~~~-~~~~g~~~~L~C~v~g~p~  875 (1075)
                      |+|.|+|.|.|..|       ...  ..+.|.|..++.          ..++.+...+.. .+.+|++++|.|.+.+.|.
T Consensus        89 DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~  168 (257)
T 1f3r_B           89 DTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNIN  168 (257)
T ss_dssp             CCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCCB
T ss_pred             cCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcCC
Confidence            99999999999865       111  235677765431          012223333333 3779999999999999999


Q ss_pred             CeeEEEE--CCEEcC---------------------CCCeeEEEECCCCceeeEEEEEEEEeCC
Q psy16863        876 PTLKWFK--DGRELK---------------------AGDIHKIISGEDGTCCLGIYTCEAHNCM  916 (1075)
Q Consensus       876 p~v~W~k--~g~~l~---------------------~~~~~~i~~~~~~~~d~G~Y~C~a~N~~  916 (1075)
                      +.|.|||  +|..+.                     .+....|.+......|+|.|+|.|.|..
T Consensus       169 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  232 (257)
T 1f3r_B          169 NYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNG  232 (257)
T ss_dssp             TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred             CcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCC
Confidence            9999999  665431                     0223467788888899999999999975

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.76  E-value=9.4e-18  Score=172.25  Aligned_cols=167  Identities=17%  Similarity=0.224  Sum_probs=117.1

Q ss_pred             CeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECC---EE--ee---------cCCcEEEEEeeCcEEEEEEccccC
Q psy16863        749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDD---QQ--VV---------ESDNVKILKETLGVCHLKIHALEV  814 (1075)
Q Consensus       749 p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g---~~--i~---------~~~~~~~~~~~~~~~~L~I~~~~~  814 (1075)
                      |.+...+....+.+|+++.|.|.+.+.|.+.+.|||.+   .+  +.         ...++.+.. ..+...|.|.+++.
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~   80 (213)
T 3r06_A            2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSG-SGRDSSFTISSLES   80 (213)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCG
T ss_pred             CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEec-cCCEEEEEECCCCc
Confidence            34555566788999999999999999999999999832   11  11         245666653 44678999999999


Q ss_pred             CCCeEEEEEEEeCCceEE-EEEEEEEEecCCCCCCeeeeecc-eeecCCCeEEEEEEEEccCCC--eeEEEECCEEcCCC
Q psy16863        815 ADQAEWKCIATNDFGQSI-TSCFLKLNVPKHYKKPKFLEELK-AVLSEGGAVNLECKVIGVPQP--TLKWFKDGRELKAG  890 (1075)
Q Consensus       815 ~D~G~Y~C~A~N~~G~~~-~s~~l~V~~~~~~~~p~~~~~~~-~~~~~g~~~~L~C~v~g~p~p--~v~W~k~g~~l~~~  890 (1075)
                      +|+|.|+|.|.|..|... ....|.|..  ...+|.+..... ..+..|+.++|.|.+.|.|++  .|+|+|||.++..+
T Consensus        81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~--~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~  158 (213)
T 3r06_A           81 EDIGSYYCQQYYNYPWTFGPGTKLEIKR--ADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDG  158 (213)
T ss_dssp             GGCSEEEEEECSSSSCEECCCEEEEECC--CCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTT
T ss_pred             ccCEEEEEecccCCceEEcCCceEEEec--cCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCc
Confidence            999999999999865332 245566632  234555543322 234578899999999987653  89999999998754


Q ss_pred             C--e----------e----EEEECCCCceeeEEEEEEEEeCCee
Q psy16863        891 D--I----------H----KIISGEDGTCCLGIYTCEAHNCMGT  918 (1075)
Q Consensus       891 ~--~----------~----~i~~~~~~~~d~G~Y~C~a~N~~G~  918 (1075)
                      .  .          +    .+.+......|+|.|+|.|+|....
T Consensus       159 ~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~  202 (213)
T 3r06_A          159 VLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTST  202 (213)
T ss_dssp             EEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred             eEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccC
Confidence            2  0          1    1122222234689999999998754

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.75  E-value=5.2e-18  Score=174.17  Aligned_cols=166  Identities=18%  Similarity=0.300  Sum_probs=125.7

Q ss_pred             eeeecCceeeccCCeEEEEEEEecCCCcEEEEEECC--Eec------------CCCCcEEEEEcCCEEEEEEcccCCCCc
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRND--RKL------------EENKIYRTQHDGNFYFIDLSSVSLFDS  417 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g--~~l------------~~~~~~~~~~~g~~~~L~I~~v~~~d~  417 (1075)
                      +...+..+.+.+|++++|.|.+.+.|.+.|.|||++  ..+            ....++.+..++....|.|.+++.+|+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   83 (213)
T 3d9a_L            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (213)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhC
Confidence            445567788999999999999999888899999854  221            112577777777778899999999999


Q ss_pred             eeEEEEEEeCCCcee-eEEEEEeecCCCCCCCeeee-ecceEEecCCeEEEEEEEEC-CCCC-eEEEEeCCEeccCC---
Q psy16863        418 GRWTCLAENAVGRSH-CSCELSVLVPKAYKAPFFTK-ELEAILTEQGTVSLECKVMG-IPTP-QLIWYKDNKKIKAG---  490 (1075)
Q Consensus       418 G~Y~C~a~n~~g~~~-~s~~l~V~~~~~~~~p~~~~-~~~~~~~~g~~v~l~C~~~g-~p~~-~v~W~~~g~~l~~~---  490 (1075)
                      |.|+|.|.|..|... ....|.|....  .+|.+.. .......+|+.+.|.|.+.| .|.+ .|+|+|+|+++..+   
T Consensus        84 G~Y~C~~~~~~~~~~~~~~~l~V~~~~--~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~  161 (213)
T 3d9a_L           84 GMYFCQQSNSWPYTFGGGTKLEIKRAD--AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN  161 (213)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEECCCC--BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE
T ss_pred             EEEEEeeecCCcceeCCCEEEEEecCC--CCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeee
Confidence            999999999877542 23467775432  2344443 22222347889999999987 6665 89999999988655   


Q ss_pred             ---------CE----EEEEeCCCCCCCcEEEEEEEEecceee
Q psy16863        491 ---------DI----FALTANPKDPSSLGTYTCEAVNCMGAA  519 (1075)
Q Consensus       491 ---------~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~~  519 (1075)
                               ..    ..|.|..+..+|+|.|+|.|.|.....
T Consensus       162 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  203 (213)
T 3d9a_L          162 SWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  203 (213)
T ss_dssp             EECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             cCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence                     11    278888888999999999999987654

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.75  E-value=5.9e-18  Score=174.49  Aligned_cols=170  Identities=15%  Similarity=0.297  Sum_probs=122.4

Q ss_pred             eeeeecCceeeccCCeEEEEEEEecC-CCcEEEEEECC--Ee-------------c-C--CCCcEEEEEcCCEEEEEEcc
Q psy16863        351 AFIRRLHDIAVKVGTRARLLVEIRSP-TEIKIHWYRND--RK-------------L-E--ENKIYRTQHDGNFYFIDLSS  411 (1075)
Q Consensus       351 ~~~~~~~~~~v~~G~~v~l~C~~~g~-p~~~v~W~k~g--~~-------------l-~--~~~~~~~~~~g~~~~L~I~~  411 (1075)
                      .+...+ .+.+.+|++++|.|.+.+. |.+.|.|||.+  ..             . .  ...++.+...+....|.|.+
T Consensus         3 ~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   81 (218)
T 3s96_B            3 VLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISN   81 (218)
T ss_dssp             SEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESS
T ss_pred             eEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEcc
Confidence            344455 7789999999999999988 88999999932  10             0 0  11366666666777899999


Q ss_pred             cCCCCceeEEEEEEeCCC-----ceeeEEEEEeecCCCCCCCeeee-ecceEEecCCeEEEEEEEEC-CCCC-eEEEEeC
Q psy16863        412 VSLFDSGRWTCLAENAVG-----RSHCSCELSVLVPKAYKAPFFTK-ELEAILTEQGTVSLECKVMG-IPTP-QLIWYKD  483 (1075)
Q Consensus       412 v~~~d~G~Y~C~a~n~~g-----~~~~s~~l~V~~~~~~~~p~~~~-~~~~~~~~g~~v~l~C~~~g-~p~~-~v~W~~~  483 (1075)
                      ++.+|+|.|+|.|.|..|     .......|.|...+. .+|.+.. ........|+.+.|.|.+.| .|.+ .|+|+|+
T Consensus        82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~-~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~  160 (218)
T 3s96_B           82 IQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPK-STPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKAN  160 (218)
T ss_dssp             CCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCC-BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             CCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCC-CCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEEC
Confidence            999999999999999876     233456777775432 3344443 22233456789999999998 5777 8999999


Q ss_pred             CEeccCC----------CEE----EEEeCCCCCCCcEEEEEEEEecceeeEEE
Q psy16863        484 NKKIKAG----------DIF----ALTANPKDPSSLGTYTCEAVNCMGAAFST  522 (1075)
Q Consensus       484 g~~l~~~----------~~~----~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  522 (1075)
                      |.++..+          ..+    .|.+......|+|.|+|.|.|..+....+
T Consensus       161 g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~  213 (218)
T 3s96_B          161 GTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKS  213 (218)
T ss_dssp             TEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEE
T ss_pred             CEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccccc
Confidence            9998652          112    26666666778999999999998866544

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.75  E-value=9.1e-18  Score=172.97  Aligned_cols=171  Identities=18%  Similarity=0.178  Sum_probs=122.9

Q ss_pred             ecCceeeccCCeEEEEEEEecCCCc---EEEEEECCEecCCCC------------------cEEEEE---cCCEEEEEEc
Q psy16863        355 RLHDIAVKVGTRARLLVEIRSPTEI---KIHWYRNDRKLEENK------------------IYRTQH---DGNFYFIDLS  410 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~~g~p~~---~v~W~k~g~~l~~~~------------------~~~~~~---~g~~~~L~I~  410 (1075)
                      .+..+.+.+|++++|.|.+.+.|.+   .|+|+|++..+....                  ++....   ......|.|.
T Consensus         5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~   84 (218)
T 4frw_A            5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR   84 (218)
T ss_dssp             CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred             CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence            4466789999999999999887755   589999886553221                  111110   1112359999


Q ss_pred             ccCCCCceeEEEEEEeCCCceeeE-EEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccC
Q psy16863        411 SVSLFDSGRWTCLAENAVGRSHCS-CELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA  489 (1075)
Q Consensus       411 ~v~~~d~G~Y~C~a~n~~g~~~~s-~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~  489 (1075)
                      +++.+|+|.|.|.+.|..+..... ..+.+..++   .+.........+.+|+.+.|.|.+.|.|+|.|+|++++..+..
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~  161 (218)
T 4frw_A           85 NAVQADEGEYECRVSTFPAGSFQARLRLRVLVPP---LPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTS  161 (218)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCC---CCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEE
T ss_pred             eccHHHCCceeEEEEeccCceeeeEEEEEEeeec---cceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCccccc
Confidence            999999999999999876655433 333333332   1222333333466788999999999999999999999987753


Q ss_pred             CC----------EEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEe
Q psy16863        490 GD----------IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIAR  528 (1075)
Q Consensus       490 ~~----------~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~  528 (1075)
                      ..          ...|.|..+...|+|.|+|.|.|.+|.....+.+.|.
T Consensus       162 ~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~  210 (218)
T 4frw_A          162 SRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH  210 (218)
T ss_dssp             EEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred             CceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence            22          2368999999999999999999999987766665553

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.75  E-value=1.5e-18  Score=173.30  Aligned_cols=146  Identities=19%  Similarity=0.270  Sum_probs=109.3

Q ss_pred             eeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcc-cCCCCceeEEEEEEeCCCceeeEEEEE
Q psy16863        360 AVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSS-VSLFDSGRWTCLAENAVGRSHCSCELS  438 (1075)
Q Consensus       360 ~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~-v~~~d~G~Y~C~a~n~~g~~~~s~~l~  438 (1075)
                      ...+|+++.|.|.+.+ ++ .|+|+|||..|..+.       +.  .|.|.+ ++.+|+|.|+|.|.|..|.......+.
T Consensus        10 v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~~-------~~--~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~   78 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS-DE-NLKWEKNGQELPQKH-------DK--HLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKAR   78 (186)
T ss_dssp             EEEETTEEEEECSSCC-CT-TCEEEETTEEECSCC-------CS--EEEEESCCTTTSCEEEEEECSSCCCCCCEEECCC
T ss_pred             EEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCCC-------CC--EEEECCCCccccCEEEEEEEEeCCCcEEEEEEEE
Confidence            3467999999999977 43 499999999987641       11  589999 999999999999999998865555555


Q ss_pred             eecCCCCC-------------CCee-----eeecc---eEEecCCeEEEEEEEECCCCCeEEEEeCCEeccCC--CEEEE
Q psy16863        439 VLVPKAYK-------------APFF-----TKELE---AILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAG--DIFAL  495 (1075)
Q Consensus       439 V~~~~~~~-------------~p~~-----~~~~~---~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~--~~~~l  495 (1075)
                      |.......             +|.+     .....   ..+.+|+++.|.|.+   |.|.|+|+|||.++...  ....|
T Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~~~~~L  155 (186)
T 1jbj_A           79 VGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNATKNTW  155 (186)
T ss_dssp             CCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSCCSSCC
T ss_pred             EecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCCCcceE
Confidence            44322110             0000     00000   113489999999998   88899999999998743  34468


Q ss_pred             EeCCCCCCCcEEEEEEEEecceee
Q psy16863        496 TANPKDPSSLGTYTCEAVNCMGAA  519 (1075)
Q Consensus       496 ~i~~~~~~d~G~Y~C~a~n~~g~~  519 (1075)
                      .|..+..+|+|.|+|.|.|..|..
T Consensus       156 ~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          156 NLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             EEEETTSCCEEEEEEEESSCEEEE
T ss_pred             EECCCCcCcCEEEEEEEEcCcCCc
Confidence            888999999999999999999876

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.75  E-value=9.7e-18  Score=174.43  Aligned_cols=176  Identities=12%  Similarity=0.141  Sum_probs=128.4

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      .+|.+...+.. .+.+|++++|.|.+.+ +...+.|||+|..+..... ..........|.|.+++.+|+|.|+|.+.|.
T Consensus         6 ~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   82 (242)
T 1p6f_A            6 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRVG   82 (242)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC-SSCTTCCEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccc-cccCCcceeEEEecCCCcccCeEEEEEEecC
Confidence            46777666655 8999999999999864 4579999999987641100 0011234457999999999999999999887


Q ss_pred             CCcee--eEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEecc-----CCCEEEEEeCCC
Q psy16863        428 VGRSH--CSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK-----AGDIFALTANPK  500 (1075)
Q Consensus       428 ~g~~~--~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~-----~~~~~~l~i~~~  500 (1075)
                      .+...  ....|.|...  +.+|.+...+...+.+|++++|.|.+.+. .+.|.|+|+|..+.     ......|.|..+
T Consensus        83 ~~~s~~S~~~~L~V~~~--~~~P~i~~~p~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~l~I~~v  159 (242)
T 1p6f_A           83 ELWSEPSNLLDLVVTEM--YDTPTLSVHPGPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQRGYGKVQAEFPLGPV  159 (242)
T ss_dssp             TEECCCCCCEEEEEECC--SCCCEEEEESCSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEEEEEECSSEEEEEEEEC
T ss_pred             CccccCCcceEEEeecc--cCCCceEccCCCccCCCCcEEEEEecCCC-CCEEEEEECCCccCccccCCCceEEEEeCCC
Confidence            55433  3455555532  33566665555668899999999998764 46999999998764     345668999999


Q ss_pred             CCCCcEEEEEEEEecc-e--eeEEEEEEEEec
Q psy16863        501 DPSSLGTYTCEAVNCM-G--AAFSTSRVIARG  529 (1075)
Q Consensus       501 ~~~d~G~Y~C~a~n~~-g--~~~~~~~v~v~~  529 (1075)
                      ..+|+|.|+|.|.|.. .  ..+....|.|.+
T Consensus       160 ~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~  191 (242)
T 1p6f_A          160 TTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTG  191 (242)
T ss_dssp             CGGGCEEEEEEEEEETTEECCCCCCEEEEEEC
T ss_pred             ccccCEEEEEEEECCCCcccCCCCCEEEEEec
Confidence            9999999999999974 1  233445666664

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.75  E-value=1.1e-18  Score=178.98  Aligned_cols=162  Identities=18%  Similarity=0.226  Sum_probs=113.8

Q ss_pred             cceeeeecCCeEEEEEEEecCCCCeEEEEEC--CEEee------------cCCcEEEEEeeCcEEEEEEccccCCCCeEE
Q psy16863        755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQQVV------------ESDNVKILKETLGVCHLKIHALEVADQAEW  820 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~~i~------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y  820 (1075)
                      +....+.+|++++|.|.+.+.|.+.|.|||+  |..+.            ...++.+.. ..+...|.|.+++.+|+|.|
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y   84 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGST-SGTTATLTISGAQPEDEAAY   84 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEE-ETTEEEEEETTCCGGGCSEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEe-eCCEEEEEECcCCcccCEEE
Confidence            4556789999999999999888889999985  33331            135666654 44577999999999999999


Q ss_pred             EEEEEeCCc-eEE--EEEEEEEEecCCCCCCeeeee-cceeecCCCeEEEEEEEEcc-CC-CeeEEEECCEEcCCCCe--
Q psy16863        821 KCIATNDFG-QSI--TSCFLKLNVPKHYKKPKFLEE-LKAVLSEGGAVNLECKVIGV-PQ-PTLKWFKDGRELKAGDI--  892 (1075)
Q Consensus       821 ~C~A~N~~G-~~~--~s~~l~V~~~~~~~~p~~~~~-~~~~~~~g~~~~L~C~v~g~-p~-p~v~W~k~g~~l~~~~~--  892 (1075)
                      +|.|.|..+ ...  ....|.|...+. .+|.+... ....+.+|+.++|.|.+.|. |+ |.|+|+|||.++..+..  
T Consensus        85 ~C~~~n~~~~~~~~~~~~~l~V~~~~~-~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~  163 (212)
T 1nfd_E           85 YCLSSYGDNNDLVFGSGTQLTVLRGPK-SSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTT  163 (212)
T ss_dssp             EEEEEETTTTEEEECCCEEEEEECCCC-BCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCC
T ss_pred             EEEEEcccCcccccCCceEEEEccCCC-CCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecC
Confidence            999998322 221  234566643221 34444321 11224578999999999988 54 79999999999875422  


Q ss_pred             --------eE----EEECCCCceeeEEEEEEEEeCCee
Q psy16863        893 --------HK----IISGEDGTCCLGIYTCEAHNCMGT  918 (1075)
Q Consensus       893 --------~~----i~~~~~~~~d~G~Y~C~a~N~~G~  918 (1075)
                              +.    |.+......|+|.|+|.|.|..+.
T Consensus       164 ~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          164 KPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET  201 (212)
T ss_dssp             CCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             CceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence                    11    333333446799999999998876

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.75  E-value=4.2e-17  Score=169.06  Aligned_cols=186  Identities=15%  Similarity=0.118  Sum_probs=122.0

Q ss_pred             ccceeeccceeEEEEEecCCCc---eEEEEe-cCCCeeeEEecCCCcccc------CCCeEEEe---eCCeEEEEEcccC
Q psy16863        250 HDIAVKVGTRARLLVEIRSPTE---IKCQFD-LNNTIPFSFRAQGDHPIF------GNRFRAIN---RDGRTELNIRRVR  316 (1075)
Q Consensus       250 ~~~~v~~g~~~~l~c~~~~~~~---~~c~~~-~~~~~~~~w~~~~~~~~~------~~~~~~~~---~~~~~~L~I~~~~  316 (1075)
                      ..+.+.+|+.++|.|.+.+.+.   +...|. .+....+.|+.++.....      ..+.....   ..+..+|.|.+++
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   91 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT   91 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence            3467889999999999875332   223332 223333444444332221      12233322   2346789999999


Q ss_pred             CCCCEEEEEEEEeCCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEec-CCCcEEEEEECCEecCCC-C
Q psy16863        317 RDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS-PTEIKIHWYRNDRKLEEN-K  394 (1075)
Q Consensus       317 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g-~p~~~v~W~k~g~~l~~~-~  394 (1075)
                      .+|+|.|+|.|.|..|.....+.+.+..      .+........+.+|+.+.|.|.+.| .|.|.|+|+|++..+... .
T Consensus        92 ~~D~G~Y~C~a~n~~~~~~~~v~~~~~~------~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~  165 (226)
T 4f80_A           92 ASDSGKYLCYFQDGDFYEKALVELKVAA------LGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVE  165 (226)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEB------CCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEE
T ss_pred             hHHCeeEEEEEECCCcEEEEEEEEeecc------ceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCc
Confidence            9999999999999988877666665543      1222234457789999999999987 589999999976544333 2


Q ss_pred             c-EEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeec
Q psy16863        395 I-YRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV  441 (1075)
Q Consensus       395 ~-~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~  441 (1075)
                      . +....+|....+.+..++.+|+|.|+|.|+|..|..++++.|.|..
T Consensus       166 ~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~e  213 (226)
T 4f80_A          166 APVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIAD  213 (226)
T ss_dssp             CCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCT
T ss_pred             eEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECC
Confidence            2 2222344455566667889999999999999999998888887754

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.75  E-value=4.6e-19  Score=183.45  Aligned_cols=175  Identities=17%  Similarity=0.280  Sum_probs=118.7

Q ss_pred             eeeecCCeEEEEEEEecCCC-----CeEEEEECCEEee-------------cCCcEEEEEe--eCcEEEEEEccccCCCC
Q psy16863        758 CQATVNEEFKFTVQVSISPE-----PKVSWFRDDQQVV-------------ESDNVKILKE--TLGVCHLKIHALEVADQ  817 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p~-----p~v~W~k~g~~i~-------------~~~~~~~~~~--~~~~~~L~I~~~~~~D~  817 (1075)
                      +.+.+|+++.|.|.+.+.|.     +.+.|+|++....             ...++.+...  ..+...|.|.+++.+|+
T Consensus         5 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~   84 (222)
T 4i0k_A            5 VVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDE   84 (222)
T ss_dssp             CCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGC
T ss_pred             EEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccC
Confidence            45789999999999998764     7899999874321             1122222110  11245799999999999


Q ss_pred             eEEEEEEEeCCceEEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEE-EccCCCeeEEEE-CCEEcCCCCe---
Q psy16863        818 AEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKV-IGVPQPTLKWFK-DGRELKAGDI---  892 (1075)
Q Consensus       818 G~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v-~g~p~p~v~W~k-~g~~l~~~~~---  892 (1075)
                      |.|+|.|.|. +.....+.|.|..++  .+|.+.......+.+|+.++|.|.+ .|.|.|.|+|++ +|..+.....   
T Consensus        85 G~Y~C~~~~~-~~~~~~~~l~V~~~~--~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~  161 (222)
T 4i0k_A           85 GSYTCFVSIQ-DFDSAAVSLQVAAPY--SKPSMTLEPNKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQ  161 (222)
T ss_dssp             SCEEEEEEEC-CCCCCCCCCCCCBCC--CCCEEECCC-----CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEE
T ss_pred             EEEEEEEEeC-CCceEEEEEEEEcCC--CCCcEEeCCCceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeE
Confidence            9999999996 444445566665432  3455544444456789999999999 899999999999 5665543211   


Q ss_pred             --------eEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEecCChhhh
Q psy16863        893 --------HKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDKSQIE  935 (1075)
Q Consensus       893 --------~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~~~  935 (1075)
                              ..+.+......|+|.|+|.|.|.+|....++.|.|.++|..+.
T Consensus       162 ~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~  212 (222)
T 4i0k_A          162 MANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPLTFP  212 (222)
T ss_dssp             EECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC------
T ss_pred             EcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCccccC
Confidence                    1123333445689999999999999999999999987665443

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.75  E-value=1e-17  Score=175.36  Aligned_cols=172  Identities=13%  Similarity=0.196  Sum_probs=121.3

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECC--EE---e---------ecCCcEEEEEeeCcEEEEEEcccc
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDD--QQ---V---------VESDNVKILKETLGVCHLKIHALE  813 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g--~~---i---------~~~~~~~~~~~~~~~~~L~I~~~~  813 (1075)
                      .+.+...+....+.+|+++.|.|.+.+.|.+.+.|+|++  ..   +         ....++.+. ...+...|.|.+++
T Consensus        24 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~L~I~~v~  102 (237)
T 3sob_L           24 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGS-GSGTDFTLTISSLQ  102 (237)
T ss_dssp             CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-EETTEEEEEESSCC
T ss_pred             cceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEE-cCCCEEEEEECCCC
Confidence            445666677788999999999999999999999999942  11   1         123566665 34467899999999


Q ss_pred             CCCCeEEEEEEEeCCceEE-EEEEEEEEecCCCCCCeeeeecc-eeecCCCeEEEEEEEEcc-C-CCeeEEEECCEEcCC
Q psy16863        814 VADQAEWKCIATNDFGQSI-TSCFLKLNVPKHYKKPKFLEELK-AVLSEGGAVNLECKVIGV-P-QPTLKWFKDGRELKA  889 (1075)
Q Consensus       814 ~~D~G~Y~C~A~N~~G~~~-~s~~l~V~~~~~~~~p~~~~~~~-~~~~~g~~~~L~C~v~g~-p-~p~v~W~k~g~~l~~  889 (1075)
                      .+|+|.|+|.|.|..|... ....|.|..  ...+|.+..... ..+.+|+.++|.|.+.|. | .|.|+|+|||.++..
T Consensus       103 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~--~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~  180 (237)
T 3sob_L          103 PEDFATYYCQQSYTTPPTFGQGTKVEIKR--TVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSG  180 (237)
T ss_dssp             GGGCEEEEEEECSSSSCEECCCEEEEEEC--CCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCS
T ss_pred             hhhCeEEEEeeccCCceEEcCcEEEEEec--CCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCC
Confidence            9999999999999876322 234666654  234555543222 223468899999999985 4 489999999999875


Q ss_pred             CC------------e----eEEEECCCCceeeEEEEEEEEeCCeeEEEE
Q psy16863        890 GD------------I----HKIISGEDGTCCLGIYTCEAHNCMGTTSSS  922 (1075)
Q Consensus       890 ~~------------~----~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~  922 (1075)
                      +.            .    ..+.+......|.|.|+|.|.|........
T Consensus       181 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~  229 (237)
T 3sob_L          181 NSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVT  229 (237)
T ss_dssp             SEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEE
T ss_pred             ceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCcee
Confidence            31            1    112233333356899999999998654433

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.74  E-value=2.8e-18  Score=179.88  Aligned_cols=178  Identities=10%  Similarity=0.105  Sum_probs=120.6

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .+|.|...+. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+.................|.|.+++.+|+|.|+|.|.|
T Consensus         6 ~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~   83 (257)
T 1b6u_A            6 RKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSV   83 (257)
T ss_dssp             CCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEEC
T ss_pred             CCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEec
Confidence            4677765554 66889999999999984 678999999997653211000000011245799999999999999999997


Q ss_pred             CCc-----eEEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCCeeEEEECCEEcCCC----------C
Q psy16863        827 DFG-----QSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAG----------D  891 (1075)
Q Consensus       827 ~~G-----~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~----------~  891 (1075)
                      ..+     ..+..+.|.|..  .+.+|.+.......+.+|+.++|.|.+.+. .+.|.|+|||..+...          .
T Consensus        84 ~~~~~~~s~~S~~~~L~V~~--~~~~P~l~~~p~~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~  160 (257)
T 1b6u_A           84 THSPYQLSAPSDPLDIVITG--LYEKPSLSAQPGPTVLAGESVTLSCSSRSS-YDMYHLSREGEAHERRFSAGPKVNGTF  160 (257)
T ss_dssp             SSCTTSCCCCCCCEEEEEEC--SSCCCEEECSSCTTCBTTCEEEEEEECSSC-CSEEEEEETTSSCEECCBCBCCSSSCC
T ss_pred             cCCCccccccCCCEEEeccc--CCCCcceEccCCCccCCCCEEEEEEeCCCC-CcEEEEEECCcccCcccccccccCCce
Confidence            532     123345566654  234566554444457899999999999775 4789999999876421          2


Q ss_pred             eeEEEECCCCceeeEEEEEEEEeCCe-----eEEEEEEEEEecCC
Q psy16863        892 IHKIISGEDGTCCLGIYTCEAHNCMG-----TTSSSAALLGFEDK  931 (1075)
Q Consensus       892 ~~~i~~~~~~~~d~G~Y~C~a~N~~G-----~~~~~~~l~v~~~~  931 (1075)
                      ...+.+....  |+|.|+|.|.|..+     ..+..+.|.|..++
T Consensus       161 ~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p  203 (257)
T 1b6u_A          161 QADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNP  203 (257)
T ss_dssp             BEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC
T ss_pred             eEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccC
Confidence            3455555554  89999999998632     22334566666543

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.74  E-value=9.2e-18  Score=176.68  Aligned_cols=169  Identities=14%  Similarity=0.152  Sum_probs=118.6

Q ss_pred             EEeccceeeeecCCeEEEEEEEecCCCCeEEEEE----------------CCEEeecC---CcEEEEEeeCcEEEEEEcc
Q psy16863        751 FIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFR----------------DDQQVVES---DNVKILKETLGVCHLKIHA  811 (1075)
Q Consensus       751 ~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k----------------~g~~i~~~---~~~~~~~~~~~~~~L~I~~  811 (1075)
                      +...+..+.+.+|+++.|.|.+.+.|.+.|.|||                ++..+...   .++.+.....+.+.|.|.+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~   83 (246)
T 4dzb_B            4 VSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTS   83 (246)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECS
T ss_pred             cEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECC
Confidence            4445566789999999999999999999999999                44434332   5777766556688999999


Q ss_pred             ccCCCCeEEEEEEEeCCc----eEEEEEEEEEEecC-CCCCCeee-eecc-eeecCCCeEEEEEEEEccCCC--eeEEEE
Q psy16863        812 LEVADQAEWKCIATNDFG----QSITSCFLKLNVPK-HYKKPKFL-EELK-AVLSEGGAVNLECKVIGVPQP--TLKWFK  882 (1075)
Q Consensus       812 ~~~~D~G~Y~C~A~N~~G----~~~~s~~l~V~~~~-~~~~p~~~-~~~~-~~~~~g~~~~L~C~v~g~p~p--~v~W~k  882 (1075)
                      ++.+|+|.|.|.|.|..+    .......|.|.... ...+|.+. ..+. ..+.+|+.++|.|.+.|.|++  .|+|+|
T Consensus        84 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k  163 (246)
T 4dzb_B           84 AHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV  163 (246)
T ss_dssp             CCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             CCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEE
Confidence            999999999999998754    12234466666411 12234432 2222 124569999999999998765  899999


Q ss_pred             CCEEcCCC----------------CeeE----EEECCCCcee-eEEEEEEEEeCCeeE
Q psy16863        883 DGRELKAG----------------DIHK----IISGEDGTCC-LGIYTCEAHNCMGTT  919 (1075)
Q Consensus       883 ~g~~l~~~----------------~~~~----i~~~~~~~~d-~G~Y~C~a~N~~G~~  919 (1075)
                      ||.+|..+                ..+.    +.+......| .|.|+|.|.|.....
T Consensus       164 ~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~  221 (246)
T 4dzb_B          164 NGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE  221 (246)
T ss_dssp             TTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCT
T ss_pred             CCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCC
Confidence            99998653                2222    2222222345 899999999976543

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.74  E-value=1.5e-17  Score=168.71  Aligned_cols=162  Identities=11%  Similarity=0.089  Sum_probs=118.3

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEE-EEEcCCEEEEEEcccCCCCceeEEEEEEe
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYR-TQHDGNFYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~-~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      .+|.|...+. ..+.+|++++|.|.+. .+.+.|.|||+|..+....... .........|.|.+++.+|+|.|+|.|.|
T Consensus         7 ~~P~i~~~p~-~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~   84 (201)
T 1nkr_A            7 RKPSLLAHPG-PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSV   84 (201)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEB
T ss_pred             CCCeEEEEcC-CccCCCCcEEEEEecc-CCCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEec
Confidence            4677665554 7789999999999996 4678999999998664321110 11122335699999999999999999987


Q ss_pred             CCC-----ceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccCC----------C
Q psy16863        427 AVG-----RSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAG----------D  491 (1075)
Q Consensus       427 ~~g-----~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~----------~  491 (1075)
                      ..+     ..+....|.|...  ..+|.+...+...+.+|+.++|.|.+.+ |.+.|.|+|+|..+...          .
T Consensus        85 ~~~~~~~~~~s~~~~l~V~~~--~~~p~i~~~p~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~  161 (201)
T 1nkr_A           85 THSPYQVSAPSDPLDIVIIGL--YEKPSLSAQPGPTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTF  161 (201)
T ss_dssp             TTBTTCCCCCCCCEEEEEECS--SCCCEEEEESCSEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEE
T ss_pred             CCCCccccCCCCCEEEEeecc--CCCCceecCCCCccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccCCce
Confidence            532     2234456666653  2456666555556889999999999886 66899999999876531          1


Q ss_pred             EEEEEeCCCCCCCcEEEEEEEEecc
Q psy16863        492 IFALTANPKDPSSLGTYTCEAVNCM  516 (1075)
Q Consensus       492 ~~~l~i~~~~~~d~G~Y~C~a~n~~  516 (1075)
                      ...|.|.++.  |+|.|+|.|.+..
T Consensus       162 ~~~L~i~~v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          162 QADFPLGPAT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             EEEEEEEECC--SCEEEEEEEEETT
T ss_pred             EEEEEeCCcC--CCeeEEEEEEcCC
Confidence            4578888887  9999999999753

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.74  E-value=2.7e-17  Score=168.15  Aligned_cols=167  Identities=16%  Similarity=0.240  Sum_probs=128.4

Q ss_pred             eEEecCCeEEEEEEEECCCCCeEEEEeCCEeccC-------------------CCE------EEEEeCCCCCCCcEEEEE
Q psy16863        456 AILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA-------------------GDI------FALTANPKDPSSLGTYTC  510 (1075)
Q Consensus       456 ~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~-------------------~~~------~~l~i~~~~~~d~G~Y~C  510 (1075)
                      ..+.+|+.+.|.|...+.|.+.+.|++++.....                   ..+      ..|.|.++..+|+|.|+|
T Consensus         9 ~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C   88 (208)
T 3r4d_A            9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTL   88 (208)
T ss_dssp             SEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEEEEE
T ss_pred             ceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeEEEE
Confidence            3477999999999988888889999997542211                   111      258899999999999999


Q ss_pred             EEEecc-eeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEecCCCCceEEEEeCC
Q psy16863        511 EAVNCM-GAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKE  589 (1075)
Q Consensus       511 ~a~n~~-g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~  589 (1075)
                      .+.|.. +.......|.|...                 ...|.+......  +.+|+.++|.|.+.+.| | .+.|++++
T Consensus        89 ~~~~~~~~~~~~~~~l~V~~~-----------------~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p-~i~W~~~g  147 (208)
T 3r4d_A           89 DMTDENYRRTQATVRFHVHQP-----------------VTQPFLQVTNTT--VKELDSVTLTCLSNDIG-A-NIQWLFNS  147 (208)
T ss_dssp             EEECSSCEEEEEEEEEEEECC-----------------CCCCEEEESCSS--CCTTCCEEEEEECSCTT-C-EEEEEETT
T ss_pred             EEEcccCceeEEEEEEEeccC-----------------CCCCEEecCCce--EeeCCCEEEEEECCCCC-C-ceEEEECC
Confidence            999984 66666677777631                 122444433333  88999999999999876 6 89999999


Q ss_pred             eEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceeeeeEEEEEeCC
Q psy16863        590 GVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP  646 (1075)
Q Consensus       590 ~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~p  646 (1075)
                      ..+..+.++.+..++   ..|.|.++..+|+|.|+|.|.|..|........+.|..|
T Consensus       148 ~~l~~~~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~  201 (208)
T 3r4d_A          148 QSLQLTERMTLSQNN---SILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFD  201 (208)
T ss_dssp             EECCCCSSEEEETTT---TEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC--
T ss_pred             EeCCCCCCeEEcCCC---CEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeC
Confidence            999877777766543   389999999999999999999999998766656655554

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.74  E-value=6.7e-18  Score=149.98  Aligned_cols=97  Identities=20%  Similarity=0.283  Sum_probs=88.2

Q ss_pred             CCCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEE
Q psy16863        746 NKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT  825 (1075)
Q Consensus       746 ~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~  825 (1075)
                      ..||.|+..++++.+.+|+++.|.|.+.|.|.|.|+|+|||++|..+.++.+..+ .+.+.|.|.+++.+|+|.|+|.|.
T Consensus        11 ~~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~   89 (107)
T 3knb_B           11 GSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPAD-GAEHGLLLTAALPTDAGVYVCRAR   89 (107)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEE-TTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeec-CceEEEEEecCChhhCEEEEEEEE
Confidence            3689999999999999999999999999999999999999999999998887654 457799999999999999999999


Q ss_pred             eCCceEEEEEEEEEEecC
Q psy16863        826 NDFGQSITSCFLKLNVPK  843 (1075)
Q Consensus       826 N~~G~~~~s~~l~V~~~~  843 (1075)
                      |.+|.+.+++.|.|..||
T Consensus        90 N~~G~~~~~~~l~V~~pP  107 (107)
T 3knb_B           90 NAAGEAYAAAAVTVLEPP  107 (107)
T ss_dssp             ETTEEEEEEEEEEEEC--
T ss_pred             ECCCEEEEEEEEEEEcCC
Confidence            999999999999998753

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.74  E-value=2.1e-17  Score=169.39  Aligned_cols=167  Identities=13%  Similarity=0.137  Sum_probs=121.2

Q ss_pred             eeeecCceeeccCCeEEEEEEEecCC---CcEEEEEECC--Eec------------CCCCcEEEEEcCCEEEEEEcccCC
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIRSPT---EIKIHWYRND--RKL------------EENKIYRTQHDGNFYFIDLSSVSL  414 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~g~p---~~~v~W~k~g--~~l------------~~~~~~~~~~~g~~~~L~I~~v~~  414 (1075)
                      +.. +..+.+.+|++++|.|.+.+.|   .+.|.|||++  ..+            ....++.+...+....|.|.+++.
T Consensus         4 v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   82 (212)
T 1q0x_L            4 VTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQT   82 (212)
T ss_dssp             EEE-CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             EEC-CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCc
Confidence            344 6778899999999999998876   4799999963  222            123566666667777899999999


Q ss_pred             CCceeEEEEEEeCCCce-eeEEEEEeecCCCCCCCeeeeec-ceEEecCCeEEEEEEEECCC-CC-eEEEEeCCEeccCC
Q psy16863        415 FDSGRWTCLAENAVGRS-HCSCELSVLVPKAYKAPFFTKEL-EAILTEQGTVSLECKVMGIP-TP-QLIWYKDNKKIKAG  490 (1075)
Q Consensus       415 ~d~G~Y~C~a~n~~g~~-~~s~~l~V~~~~~~~~p~~~~~~-~~~~~~g~~v~l~C~~~g~p-~~-~v~W~~~g~~l~~~  490 (1075)
                      +|+|.|.|.|.|..+.. .....|.|...+. .+|.+.... .....+|+.++|.|.+.|.+ ++ .|+|+|||+++..+
T Consensus        83 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~-~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~  161 (212)
T 1q0x_L           83 EDEAIYFCALWSNNKLVFGGGTKLTVLGQPK-SSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAG  161 (212)
T ss_dssp             GGCEEEEEEEECSSCEEECCCEEEEECCSCC-BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTT
T ss_pred             cCCEEEEEEEecCchhhcCCCeEEEEecCCC-CCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCC
Confidence            99999999999987642 2334566643321 244544322 22244688999999999854 43 89999999988543


Q ss_pred             C---------------EEEEEeCCCCCCCcEEEEEEEEecceeeE
Q psy16863        491 D---------------IFALTANPKDPSSLGTYTCEAVNCMGAAF  520 (1075)
Q Consensus       491 ~---------------~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  520 (1075)
                      .               ...|.|.....+|+|.|+|.|.|......
T Consensus       162 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  206 (212)
T 1q0x_L          162 METTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSN  206 (212)
T ss_dssp             EEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEE
T ss_pred             eecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCccee
Confidence            1               12467777778899999999999876543

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.74  E-value=9.2e-18  Score=172.46  Aligned_cols=168  Identities=17%  Similarity=0.202  Sum_probs=116.1

Q ss_pred             cceeeeecCCeEEEEEEEecC-------CCCeEEEEECCEE------ee-----------cCCcEEEEEe-eCcEEEEEE
Q psy16863        755 LKSCQATVNEEFKFTVQVSIS-------PEPKVSWFRDDQQ------VV-----------ESDNVKILKE-TLGVCHLKI  809 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~-------p~p~v~W~k~g~~------i~-----------~~~~~~~~~~-~~~~~~L~I  809 (1075)
                      +..+.+.+|+++.|.|.+.+.       +.+.+.|+|++..      +.           ...++.+..+ ..+.+.|.|
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I   86 (214)
T 2zg1_A            7 QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSI   86 (214)
T ss_dssp             CSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEE
Confidence            456778999999999999864       5789999998752      11           1235554322 123457999


Q ss_pred             ccccCCCCeEEEEEEEeCCceEE----EEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEcc----CCCeeEEE
Q psy16863        810 HALEVADQAEWKCIATNDFGQSI----TSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGV----PQPTLKWF  881 (1075)
Q Consensus       810 ~~~~~~D~G~Y~C~A~N~~G~~~----~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~----p~p~v~W~  881 (1075)
                      .+++.+|+|.|.|.|.|..+...    ..+.|.|..++  .+|.+..+.  .+.+|+.++|.|.+.|.    |.|.|+|+
T Consensus        87 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~--~~p~i~~~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~W~  162 (214)
T 2zg1_A           87 GDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALI--EKPDIHFLE--PLESGRPTRLSCSLPGSCEAGPPLTFSWT  162 (214)
T ss_dssp             CSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCC--CCCEEC--C--CCCTTCCEEEEEECTTCCSCSSCCEEEEE
T ss_pred             ccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCC--CCCceecCc--cccCCCeEEEEEEeccCCCCCCCceEEEe
Confidence            99999999999999999874432    25667776543  244443221  26689999999999874    88999999


Q ss_pred             ECCEEcCC---CCeeEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEE
Q psy16863        882 KDGRELKA---GDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALL  926 (1075)
Q Consensus       882 k~g~~l~~---~~~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~  926 (1075)
                      |+|..+..   .....|.+......|.|.|+|.|.|..|..+.++.+.
T Consensus       163 ~~~~~~~~~~~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~  210 (214)
T 2zg1_A          163 GNALSPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQ  210 (214)
T ss_dssp             SSTTSSSCSSCCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEE
T ss_pred             CCCCccCCCCceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEE
Confidence            99876432   1234566666667789999999999876654444443

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.74  E-value=5.8e-18  Score=176.40  Aligned_cols=156  Identities=15%  Similarity=0.312  Sum_probs=119.1

Q ss_pred             ecCceeeccCCeEEEEEEEecCCC-cEEEEEECCEecC---------C----CCcEE----------EEEcCCEEEEEEc
Q psy16863        355 RLHDIAVKVGTRARLLVEIRSPTE-IKIHWYRNDRKLE---------E----NKIYR----------TQHDGNFYFIDLS  410 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~~g~p~-~~v~W~k~g~~l~---------~----~~~~~----------~~~~g~~~~L~I~  410 (1075)
                      .+.++.+.+|+++.|.|.+.+.+. +.+.|+|++....         .    ..++.          +..++.   |.|.
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~---L~i~   82 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGR---LVLA   82 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCC---EEES
T ss_pred             CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCce---EEEc
Confidence            456678999999999999988885 8999998764322         1    11222          222233   8999


Q ss_pred             ccCCCCceeEEEEEEeCC-CceeeEEEEEeecCCCCCCCeeeeecceE-EecCCeE-EEEEEE-ECCCCCeEEEEeCCEe
Q psy16863        411 SVSLFDSGRWTCLAENAV-GRSHCSCELSVLVPKAYKAPFFTKELEAI-LTEQGTV-SLECKV-MGIPTPQLIWYKDNKK  486 (1075)
Q Consensus       411 ~v~~~d~G~Y~C~a~n~~-g~~~~s~~l~V~~~~~~~~p~~~~~~~~~-~~~g~~v-~l~C~~-~g~p~~~v~W~~~g~~  486 (1075)
                      +++.+|+|.|+|.|.|.. |.....+.|.|..+|..  |.+....... +.+|+.+ .|.|.+ .|.|.+.++|+|+|.+
T Consensus        83 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~--~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~  160 (231)
T 2pet_A           83 EAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEA--TEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQR  160 (231)
T ss_dssp             SCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCC--CEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEE
T ss_pred             ccCcccCceEEEEEEecCCCceEEEEEEEEEecCCC--cEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCcc
Confidence            999999999999999987 77778888888877642  4555443332 5688887 999999 8999999999999999


Q ss_pred             ccCCC----E------------------EEEEeCCCCCCCcEEEEEEEEec
Q psy16863        487 IKAGD----I------------------FALTANPKDPSSLGTYTCEAVNC  515 (1075)
Q Consensus       487 l~~~~----~------------------~~l~i~~~~~~d~G~Y~C~a~n~  515 (1075)
                      +....    +                  ..|.+.....+|+|.|+|.|.|.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          161 LEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             CCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             CccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            87654    1                  34677666666799999999993

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.74  E-value=1.5e-17  Score=173.99  Aligned_cols=165  Identities=11%  Similarity=0.142  Sum_probs=113.8

Q ss_pred             EEeccceeeeecCCeEEEEEEEecCCCCeEEEEEC--CEEe---------------ecCCcEEEEEeeCcEEEEEEcccc
Q psy16863        751 FIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQQV---------------VESDNVKILKETLGVCHLKIHALE  813 (1075)
Q Consensus       751 ~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~~i---------------~~~~~~~~~~~~~~~~~L~I~~~~  813 (1075)
                      +...+....+.+|++++|.|. .+.|.+.|.|+|+  +..+               ....++.+.....+...|.|.+++
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~   81 (238)
T 2p1y_A            3 VTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELAT   81 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCC
T ss_pred             ceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCC
Confidence            344456678999999999999 7789999999995  2211               013456654433345689999999


Q ss_pred             CCCCeEEEEEEEeCCceEE-----EEEEEEEEecCCCC-------CCeeeeecce-eecCCCeEEEEEEEEccCCCeeEE
Q psy16863        814 VADQAEWKCIATNDFGQSI-----TSCFLKLNVPKHYK-------KPKFLEELKA-VLSEGGAVNLECKVIGVPQPTLKW  880 (1075)
Q Consensus       814 ~~D~G~Y~C~A~N~~G~~~-----~s~~l~V~~~~~~~-------~p~~~~~~~~-~~~~g~~~~L~C~v~g~p~p~v~W  880 (1075)
                      .+|+|.|+|.|.|..|...     ....|.|..++...       .+.+...+.. .+.+|++++|.|.+.|.|.|.+.|
T Consensus        82 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W  161 (238)
T 2p1y_A           82 PSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPW  161 (238)
T ss_dssp             GGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEE
T ss_pred             cccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEE
Confidence            9999999999999876311     23466666432100       0133333333 477999999999999999999999


Q ss_pred             EECC--E---Ec--------------------CCCCeeEEEECCCCceeeEEEEEEEEeCC
Q psy16863        881 FKDG--R---EL--------------------KAGDIHKIISGEDGTCCLGIYTCEAHNCM  916 (1075)
Q Consensus       881 ~k~g--~---~l--------------------~~~~~~~i~~~~~~~~d~G~Y~C~a~N~~  916 (1075)
                      ||++  .   .+                    ..+....|.+......|+|.|+|.|.|..
T Consensus       162 ~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          162 YQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             EEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             EEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            9963  1   11                    01223467788888899999999999984

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.74  E-value=7.7e-18  Score=179.95  Aligned_cols=194  Identities=13%  Similarity=0.090  Sum_probs=122.6

Q ss_pred             CeeeeecCceeeccCCeEEEEEEEe---cCCCcEEEEEECCEecCCC------------------CcEEEEE--cCCEEE
Q psy16863        350 PAFIRRLHDIAVKVGTRARLLVEIR---SPTEIKIHWYRNDRKLEEN------------------KIYRTQH--DGNFYF  406 (1075)
Q Consensus       350 p~~~~~~~~~~v~~G~~v~l~C~~~---g~p~~~v~W~k~g~~l~~~------------------~~~~~~~--~g~~~~  406 (1075)
                      +.+...+..+.+.+|++++|.|.+.   +.+.+.|.|+|++......                  .++.+..  ......
T Consensus         6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   85 (268)
T 3mj6_A            6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS   85 (268)
T ss_dssp             ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred             cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence            3444455678899999999999997   6777899999976543222                  2222211  011145


Q ss_pred             EEEcccCCCCceeEEEEEEeCCCceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEE---ECCCCCeEEEEeC
Q psy16863        407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKV---MGIPTPQLIWYKD  483 (1075)
Q Consensus       407 L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~---~g~p~~~v~W~~~  483 (1075)
                      |.|.+++.+|+|.|+|.|.|..+....+..+.+.+.+.  .|     ....+.+|+.+.|.|.+   .+.|.+.++|+++
T Consensus        86 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~--~p-----~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~  158 (268)
T 3mj6_A           86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPE--EP-----RDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFS  158 (268)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECC--CC-----SEEEEETTCCEEECCBCEESSSSCCCEEEEEEE
T ss_pred             EEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEecc--CC-----CccccccCCcEEEEEEecCCCCCCccceEEEec
Confidence            99999999999999999999876654455555544322  11     12347899999999999   5779999999994


Q ss_pred             -CEecc--------------------------------CCCEEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEecc
Q psy16863        484 -NKKIK--------------------------------AGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQ  530 (1075)
Q Consensus       484 -g~~l~--------------------------------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~  530 (1075)
                       +..+.                                ......|.|..+..+|+|.|+|.|.|..|....++.|.|.. 
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~-  237 (268)
T 3mj6_A          159 SGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ-  237 (268)
T ss_dssp             CTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC-
T ss_pred             CCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEc-
Confidence             32110                                02244789999999999999999999999998888888852 


Q ss_pred             ccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEE
Q psy16863        531 QSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAI  569 (1075)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~  569 (1075)
                                        .+|.+...+.+..+.+|+.+.
T Consensus       238 ------------------~~p~~~~~p~~~~~~~~q~~~  258 (268)
T 3mj6_A          238 ------------------DEFQRTISPTPPTDKGQQGIL  258 (268)
T ss_dssp             ------------------C--------------------
T ss_pred             ------------------CCCeeeeCCCCCCCCcceecc
Confidence                              234444455666666666543

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.74  E-value=6.2e-18  Score=167.26  Aligned_cols=155  Identities=15%  Similarity=0.217  Sum_probs=111.8

Q ss_pred             ceeeeecCCeEEEEEEEec-CCCCeEEEEEC-CEEee------------cC--CcEEEEEeeCcEEEEEEccccCCCCeE
Q psy16863        756 KSCQATVNEEFKFTVQVSI-SPEPKVSWFRD-DQQVV------------ES--DNVKILKETLGVCHLKIHALEVADQAE  819 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g-~p~p~v~W~k~-g~~i~------------~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~  819 (1075)
                      ..+.+.+|++++|.|.+.+ .+.+.|.|+|+ +..+.            ..  .|+.+.   .+...|.|.+++.+|+|.
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~---~~~~sL~I~~v~~~D~G~   83 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLD---KTNGALRIYNVSKEDRGD   83 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEEC---TTTCCEEECSCCGGGCEE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEe---CCCccEEEcCCCHHHCeE
Confidence            3467899999999999864 34789999994 43332            11  344431   123479999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCCeeEEEECCEEcCCCCeeEEEECC
Q psy16863        820 WKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGE  899 (1075)
Q Consensus       820 Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~~~~i~~~~  899 (1075)
                      |+|.+.+.. .....+.|.|..+.  ..|.+..       .+..++|.|.+.+.|.|.|+|+|||..|.......|.+..
T Consensus        84 Y~C~v~~~~-~~~~~~~L~V~~~~--~~P~i~~-------~~~~v~L~C~~~~gp~p~i~W~~~~~~l~~~~~~~l~~~~  153 (180)
T 2dru_A           84 YYMRMLHET-EDQWKITMEVYEMV--SKPMIYW-------ECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQW  153 (180)
T ss_dssp             EEEEEESSS-EEEEEEEEEEECCC--CCCEEEE-------EGGGTEEEEECSSCTTCEEEEEETTEEEEEESSSEEEEEC
T ss_pred             EEEEEEcCC-eEEEEEEEEEECCC--CCCEEEe-------cCCCEEEEEEeCCCCCCEEEEEECCeECcCCCCCEEEEEE
Confidence            999998876 55667777777642  3444332       2456999999943499999999999988643344454422


Q ss_pred             CCceeeEEEEEEEEeCCeeEEEEEEE
Q psy16863        900 DGTCCLGIYTCEAHNCMGTTSSSAAL  925 (1075)
Q Consensus       900 ~~~~d~G~Y~C~a~N~~G~~~~~~~l  925 (1075)
                        ..|+|.|+|.|.|.+|..++.+.+
T Consensus       154 --~~d~g~Y~C~a~N~~~~~~~~~~i  177 (180)
T 2dru_A          154 --TNLRAPFKCKAVNRVSQESEMEVV  177 (180)
T ss_dssp             --SCCSSCEEEEEEETTEEEEEEECC
T ss_pred             --hhcCccEEEEEecCcCccccceeE
Confidence              567999999999999998776543

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.74  E-value=3e-18  Score=180.64  Aligned_cols=169  Identities=12%  Similarity=0.196  Sum_probs=110.2

Q ss_pred             ccceeeeecCCeEEEEEEEecCCCCe-----EEEEECCEEeec--------CCcEE-------E--EEeeCcEEEEEEcc
Q psy16863        754 GLKSCQATVNEEFKFTVQVSISPEPK-----VSWFRDDQQVVE--------SDNVK-------I--LKETLGVCHLKIHA  811 (1075)
Q Consensus       754 ~~~~~~~~~g~~~~l~C~v~g~p~p~-----v~W~k~g~~i~~--------~~~~~-------~--~~~~~~~~~L~I~~  811 (1075)
                      .+....+..|+++.|.|.+.|.|.+.     |.|+|++.....        +....       +  .....+...|.|.+
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   88 (248)
T 3pv7_A            9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPG   88 (248)
T ss_dssp             TTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESS
T ss_pred             CCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCC
Confidence            34456788999999999999988876     999997432110        00000       0  00011234599999


Q ss_pred             ccCCCCeEEEEEEEeCCceEEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEc-cCCC-eeEEEECCEEcCC
Q psy16863        812 LEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIG-VPQP-TLKWFKDGRELKA  889 (1075)
Q Consensus       812 ~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g-~p~p-~v~W~k~g~~l~~  889 (1075)
                      ++.+|+|.|+|.|.|..|.....+.|.|..+|     .+..........|+.++|.|.+.| .|.| .|+|+|||.++..
T Consensus        89 v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P-----~v~~~~~~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~  163 (248)
T 3pv7_A           89 IQLEEAGEYRCEVVVTPLKAQGTVQLEVVASP-----ASRLLLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPH  163 (248)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEEBCC-----EEEEECC--------CEEEEEEEEEBSSCCEEEEEEECSSSCS
T ss_pred             CCHHHCeEEEEEEEeCCccceeEEEEEEecCC-----ceEEecCCccccCCCcEEEEEEccEECCCeEEEEEECCccCCC
Confidence            99999999999999999988888888888643     333323333456788889999999 7988 9999999964321


Q ss_pred             C-----------------Ce----eEEEECCCCceeeEEEEEEEEeCCee--EEEEEEEEE
Q psy16863        890 G-----------------DI----HKIISGEDGTCCLGIYTCEAHNCMGT--TSSSAALLG  927 (1075)
Q Consensus       890 ~-----------------~~----~~i~~~~~~~~d~G~Y~C~a~N~~G~--~~~~~~l~v  927 (1075)
                      +                 ..    ..+.+......|.|.|+|.|.|..|.  .+.++.|.|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          164 PIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             CEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             ccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence            1                 11    12333333445689999999999996  455555565

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.74  E-value=6.8e-17  Score=162.31  Aligned_cols=160  Identities=18%  Similarity=0.217  Sum_probs=115.4

Q ss_pred             cCceeeccCCeEEEEEEEec-CCCcEEEEEECCEecC---CC---------------CcEEEEEcCCEEEEEEcccCCCC
Q psy16863        356 LHDIAVKVGTRARLLVEIRS-PTEIKIHWYRNDRKLE---EN---------------KIYRTQHDGNFYFIDLSSVSLFD  416 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g-~p~~~v~W~k~g~~l~---~~---------------~~~~~~~~g~~~~L~I~~v~~~d  416 (1075)
                      +..+.+.+|++++|.|.+.+ .+.+.|.|+|+|..+.   .+               .|+.+..   ...|.|.+++.+|
T Consensus         5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~---~~sL~I~~v~~~D   81 (193)
T 2if7_A            5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQ---SYSLQLSNLKMED   81 (193)
T ss_dssp             CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECT---TCCEEECSCCGGG
T ss_pred             CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECC---CeEEEECCCCccc
Confidence            44567889999999999865 4457999999987542   11               1333321   1359999999999


Q ss_pred             ceeEEEEEEeCCCceeeEEEEEeecCCCCCCCeeeeecceEEecCC-eEEEEEEEECC-CCCeEEEEeCCEeccCCCEEE
Q psy16863        417 SGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQG-TVSLECKVMGI-PTPQLIWYKDNKKIKAGDIFA  494 (1075)
Q Consensus       417 ~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~-~v~l~C~~~g~-p~~~v~W~~~g~~l~~~~~~~  494 (1075)
                      +|.|+|.|.|..|.....+.|.|..++.  .|.+.... .....|. .++|.|.+.|. |.+.|+|+|+|..+..+....
T Consensus        82 ~G~Y~C~~~~~~~~~~~~~~L~V~~~~~--~p~i~~~~-~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~~~~l~  158 (193)
T 2if7_A           82 TGSYRAQISTKTSAKLSSYTLRILRQLR--NIQVTNHS-QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLT  158 (193)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEECCCE--EEEEEECC-C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEESSSEEE
T ss_pred             CceEEEEEEecCCCeEEEEEEEEEccCC--CCeEecCc-eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCCCCeEE
Confidence            9999999999988776677888875532  23333332 2233455 89999999985 578999999999987766655


Q ss_pred             EEeCCCCCCCcEEEEEEEEecceeeEEE
Q psy16863        495 LTANPKDPSSLGTYTCEAVNCMGAAFST  522 (1075)
Q Consensus       495 l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  522 (1075)
                      +... ....|+|.|+|.|.|..|.....
T Consensus       159 i~~~-~~~~d~G~Y~C~a~N~~g~~s~~  185 (193)
T 2if7_A          159 VSWD-PRISSEQDYTCIAENAVSNLSFS  185 (193)
T ss_dssp             EEEC-TTTCSCCEEEEEEEETTEEEEEE
T ss_pred             EEec-cCcCCCCcEEEEEECCCCccccc
Confidence            4432 22348999999999999987443

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.74  E-value=1.5e-17  Score=175.72  Aligned_cols=252  Identities=13%  Similarity=0.156  Sum_probs=105.1

Q ss_pred             cccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEec--CCCcc-ccCCCeEEEeeCCeEEEEEcccCCCCCEEEEE
Q psy16863        249 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRA--QGDHP-IFGNRFRAINRDGRTELNIRRVRRDDGGRYSV  325 (1075)
Q Consensus       249 ~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~--~~~~~-~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C  325 (1075)
                      +++..|.+|+++.|.|..+-+          .+..+.|..  .+... ..+        .....|.|.++..+  |.|+|
T Consensus         6 P~~~~V~~G~sv~l~Cs~~c~----------~p~~~~~~t~l~~~~~~~~g--------~~~~~~~l~~v~~~--~~y~C   65 (291)
T 1mq8_A            6 PSKVILPRGGSVLVTCSTSCD----------QPKLLGIETPLPKKELLLPG--------NNRKVYELSNVQED--SQPMC   65 (291)
T ss_dssp             CSEEEECTTCEEEEEEEECCS----------SCSEEEEECSSCCCCCCCSC--------SSEEEEEEESCCSC--CCCEE
T ss_pred             CCccEEcCCCeEEEEEeCCCC----------CCccceEEecCCCcccccCC--------CceEEEEEEecccC--CeEEE
Confidence            345678999999999987632          122345532  11111 111        12236888888754  46999


Q ss_pred             EEEeCCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecC-CCc--EEEEEECCEecCCCCcEEEEEcC
Q psy16863        326 TASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSP-TEI--KIHWYRNDRKLEENKIYRTQHDG  402 (1075)
Q Consensus       326 ~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p~~--~v~W~k~g~~l~~~~~~~~~~~g  402 (1075)
                      .+.......+..+.|.|+.. |..|.+.  +....+.+|+.++|.|.+.|. |..  .|+|||+++.|.....   ..+.
T Consensus        66 ~~~~~~~~~~~~v~l~V~~~-P~~v~I~--~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~---~~~~  139 (291)
T 1mq8_A           66 YSNCPDGQSTAKTFLTVYWT-PERVELA--PLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA---VGEP  139 (291)
T ss_dssp             EEECSSCEEEEECEEEECBC-CSCCCBC--CCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEEC---CBTT
T ss_pred             EEEcCCccEEEEEEEEEecC-CCCCEEe--cCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccC---CCCC
Confidence            99765445677778888762 3333333  223558899999999999774 432  7999999988853221   1122


Q ss_pred             CEEEEEEcccCCCCceeEEEEEEeCCCc--------eeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCC
Q psy16863        403 NFYFIDLSSVSLFDSGRWTCLAENAVGR--------SHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIP  474 (1075)
Q Consensus       403 ~~~~L~I~~v~~~d~G~Y~C~a~n~~g~--------~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p  474 (1075)
                      ...+|.+.....+|.+.|+|+|.|..+.        .+....|.|.++|.. .+.+..+  ..+.+|+.+.|.|.+.|.|
T Consensus       140 ~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~-~~~~~~p--~~l~eG~~v~l~C~~~g~~  216 (291)
T 1mq8_A          140 AEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPAT-PPQLVSP--RVLEVDTQGTVVCSLDGLF  216 (291)
T ss_dssp             EEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC-----------------------------------
T ss_pred             ceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCC-CceecCC--cCccCCCeEEEEEEcCCCC
Confidence            2345666666666666999999997653        244567888776532 1222221  2578999999999999975


Q ss_pred             CC---eEEEEeCCEeccCC-----CEEEEEeCC-CCC--CCcEEEEEEEEecceeeEEEEEEEEec
Q psy16863        475 TP---QLIWYKDNKKIKAG-----DIFALTANP-KDP--SSLGTYTCEAVNCMGAAFSTSRVIARG  529 (1075)
Q Consensus       475 ~~---~v~W~~~g~~l~~~-----~~~~l~i~~-~~~--~d~G~Y~C~a~n~~g~~~~~~~v~v~~  529 (1075)
                      ++   .++|+++|+.+...     +........ +..  ++.+.|+|.|.|.....++...|.|.+
T Consensus       217 P~~~~~v~w~~~g~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~  282 (291)
T 1mq8_A          217 PVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS  282 (291)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             CCcccEEEEEECCEecCceeeecCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEc
Confidence            54   69999999998632     222222211 123  346788899988665566677777763

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.73  E-value=8.7e-18  Score=165.70  Aligned_cols=156  Identities=19%  Similarity=0.241  Sum_probs=116.8

Q ss_pred             CceeeccCCeEEEEEEEe--cCCCcEEEEEE--CCEec----------CCCCcEEEEEcCCEEEEEEcccCCCCceeEEE
Q psy16863        357 HDIAVKVGTRARLLVEIR--SPTEIKIHWYR--NDRKL----------EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTC  422 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~--g~p~~~v~W~k--~g~~l----------~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C  422 (1075)
                      ..+...+|++++|.|...  +.+.+.|.|+|  ++..|          ..+.|+.+..+|   .|.|.+++.+|+|.|+|
T Consensus         7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ng---sL~I~~v~~~DsG~Y~c   83 (182)
T 1hnf_A            7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG---TLKIKHLKTDDQDIYKV   83 (182)
T ss_dssp             EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTS---CEEECSCCGGGCEEEEE
T ss_pred             cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCC---CEEECCCChhhCEEEEE
Confidence            346778999999999542  34567999999  98876          345677766555   48999999999999999


Q ss_pred             EEEeCCCcee--eEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccCCCEEEEEeCCC
Q psy16863        423 LAENAVGRSH--CSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPK  500 (1075)
Q Consensus       423 ~a~n~~g~~~--~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~~~~l~i~~~  500 (1075)
                      .|.|..|...  ..+.|.|..+  ...|.+..       .+..+.|.|.+.+.|.+.|.|+++|..+ .+....+.+.. 
T Consensus        84 ~~~n~~g~~~~~~~~~L~V~~~--~~~P~i~~-------~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~~~~~i~~~~-  152 (182)
T 1hnf_A           84 SIYDTKGKNVLEKIFDLKIQER--VSKPKISW-------TCINTTLTCEVMNGTDPELNLYQDGKHL-KLSQRVITHKW-  152 (182)
T ss_dssp             EEEETTSCEEEEEEEEEEEECC--CCCCEEEE-------ETTTTEEEEECSSCSSCEEEEEESSCEE-EEESSCEEEEC-
T ss_pred             EEEeCCCceeEEEEEEEEEcCc--CCCCEEEE-------ccCcEEEEeEccCCCCCEEEEEECCEEC-CCCCcEEEEec-
Confidence            9999988764  3455666543  23344432       2347899999999999999999999988 32223344333 


Q ss_pred             CCCCcEEEEEEEEecceeeEEEEEEE
Q psy16863        501 DPSSLGTYTCEAVNCMGAAFSTSRVI  526 (1075)
Q Consensus       501 ~~~d~G~Y~C~a~n~~g~~~~~~~v~  526 (1075)
                      ...|+|.|+|.|.|..|...+...+.
T Consensus       153 ~~~d~G~Y~C~a~N~~~~~~s~~~~~  178 (182)
T 1hnf_A          153 TTSLSAKFKCTAGNKVSKESSVEPVS  178 (182)
T ss_dssp             CSCEEEEEEEEEECSSCEEEEEEEEE
T ss_pred             ccCCCcEEEEEEEeCCCCcEEcceec
Confidence            46899999999999999887776553

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.73  E-value=9.2e-18  Score=179.33  Aligned_cols=192  Identities=16%  Similarity=0.213  Sum_probs=110.3

Q ss_pred             cCCCceEEEEEEecCceEEEEEEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEecCCCCeEE
Q psy16863        702 TSSLGSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVS  781 (1075)
Q Consensus       702 ~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~  781 (1075)
                      ..|.+.|.|.|.|..|....+..+                        .+...+..+.+.+|++++|.|.+.+ +.+.+.
T Consensus         5 ~~~~~~y~~~~~~~~g~~~~~~~~------------------------~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~   59 (270)
T 3qib_D            5 RADLIAYLKQATKGGGGSGGGGGM------------------------KVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVF   59 (270)
T ss_dssp             -----------------------C------------------------CCEEECSEEEEETTSCEEEEEECCT-TCCEEE
T ss_pred             hhhHHHHHHHHhccCCccccccce------------------------eEEeCCCeEEEcCCCCEEEEEEecC-CCceEE
Confidence            357899999999988876554333                        3344455677999999999999875 778999


Q ss_pred             EEEC--CEE------------eecC---C-cEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCc----eEEEEEEEEE
Q psy16863        782 WFRD--DQQ------------VVES---D-NVKILKETLGVCHLKIHALEVADQAEWKCIATNDFG----QSITSCFLKL  839 (1075)
Q Consensus       782 W~k~--g~~------------i~~~---~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G----~~~~s~~l~V  839 (1075)
                      |||.  +..            ....   . ++.+.....+.+.|.|.+++.+|+|.|.|.|.|..+    .......|.|
T Consensus        60 W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V  139 (270)
T 3qib_D           60 WYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLV  139 (270)
T ss_dssp             EEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEE
T ss_pred             EEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEE
Confidence            9992  211            1111   1 555543334567999999999999999999997432    2223456777


Q ss_pred             EecC-CCCCCeee-eecce-eecCCCeEEEEEEEEc-cCCC-eeEEEECCEEcCCCC----------------eeEE---
Q psy16863        840 NVPK-HYKKPKFL-EELKA-VLSEGGAVNLECKVIG-VPQP-TLKWFKDGRELKAGD----------------IHKI---  895 (1075)
Q Consensus       840 ~~~~-~~~~p~~~-~~~~~-~~~~g~~~~L~C~v~g-~p~p-~v~W~k~g~~l~~~~----------------~~~i---  895 (1075)
                      .... ...+|.+. ..... .+..|+.++|.|.+.| .|.| .|+|+|||.++..+.                .+.+   
T Consensus       140 ~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~  219 (270)
T 3qib_D          140 LEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSR  219 (270)
T ss_dssp             ESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEE
T ss_pred             ccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEE
Confidence            6421 22244432 22221 2446999999999998 6666 799999999986531                1221   


Q ss_pred             -EECCCCcee-eEEEEEEEEeCCee
Q psy16863        896 -ISGEDGTCC-LGIYTCEAHNCMGT  918 (1075)
Q Consensus       896 -~~~~~~~~d-~G~Y~C~a~N~~G~  918 (1075)
                       .+......| .|.|+|.|.|....
T Consensus       220 L~i~~~~~~d~~g~YtC~v~~~~l~  244 (270)
T 3qib_D          220 LRVSATFWQNPRNHFRCQVQFYGLS  244 (270)
T ss_dssp             EEEEHHHHHSTTCEEEEEEEECCBC
T ss_pred             EEEcHHHhccCCCeEEEEEEecCCC
Confidence             222222234 89999999997654

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.73  E-value=2.1e-17  Score=169.07  Aligned_cols=162  Identities=17%  Similarity=0.299  Sum_probs=121.2

Q ss_pred             cCceeeccCCeEEEEEEEecCCCcEEEEEECC--Eec------------CCCCcEEEEEcCCEEEEEEcccCCCCceeEE
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPTEIKIHWYRND--RKL------------EENKIYRTQHDGNFYFIDLSSVSLFDSGRWT  421 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g--~~l------------~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~  421 (1075)
                      +..+.+.+|++++|.|.+.+.|.+.|.|||++  ..+            ....++.+...+....|.|.+++.+|+|.|+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   86 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence            67788999999999999999888899999953  222            1135677666777778999999999999999


Q ss_pred             EEEEeCCCcee-eEEEEEeecCCCCCCCeeeee-cceEEecCCeEEEEEEEEC-CCCC-eEEEEeCCEeccCC-------
Q psy16863        422 CLAENAVGRSH-CSCELSVLVPKAYKAPFFTKE-LEAILTEQGTVSLECKVMG-IPTP-QLIWYKDNKKIKAG-------  490 (1075)
Q Consensus       422 C~a~n~~g~~~-~s~~l~V~~~~~~~~p~~~~~-~~~~~~~g~~v~l~C~~~g-~p~~-~v~W~~~g~~l~~~-------  490 (1075)
                      |.|.|..+... ....|.|....  .+|.+... ......+|+.++|.|.+.| .|++ .|+|+|||+++..+       
T Consensus        87 C~~~~~~~~~~~~~~~l~V~~~~--~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~  164 (210)
T 1lk3_L           87 CQQSWNGPLTFGAGTKLELKRAD--AAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTD  164 (210)
T ss_dssp             EEECSSSSCEECCCEEEEECCCC--BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECC
T ss_pred             EEEEcCCCceeCCCEEEEEcCCC--cCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCC
Confidence            99999876432 23466775432  23444432 2222347899999999997 4554 89999999988654       


Q ss_pred             -----CEE----EEEeCCCCCCCcEEEEEEEEecceee
Q psy16863        491 -----DIF----ALTANPKDPSSLGTYTCEAVNCMGAA  519 (1075)
Q Consensus       491 -----~~~----~l~i~~~~~~d~G~Y~C~a~n~~g~~  519 (1075)
                           ..+    .|.|..+..+|+|.|+|.|.|.....
T Consensus       165 ~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (210)
T 1lk3_L          165 QDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS  202 (210)
T ss_dssp             CCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             ccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence                 111    57888888889999999999976543

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.73  E-value=1.7e-15  Score=186.28  Aligned_cols=418  Identities=14%  Similarity=0.122  Sum_probs=239.3

Q ss_pred             eEEEEccCCCeeEEEeeCCCceeccCcEEEEecCCeEEEEEceeccCC-CeEEEEEEEcCceeEEEEEEEeeec-cCCCC
Q psy16863        165 IKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDD-GGRYSVTASNESGYSTAKFELSVES-QVPDA  242 (1075)
Q Consensus       165 ~~c~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D-~G~Y~C~a~n~~g~~~~~~~l~V~~-~~~~~  242 (1075)
                      +.|.+.|.|.+.+.|.++|.....-.         ...|.|..+...+ .+.|.|.+.|..|..... .+.+.. ..+.+
T Consensus        96 v~c~~~g~P~p~i~W~k~g~~~~~~~---------~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~-~v~~~~~~~~~~  165 (731)
T 2v5y_A           96 VYVKVNNGPLGNPIWNISGDPTRTWN---------RAELAISTFWPNFYQVIFEVITSGHQGYLAID-EVKVLGHPCTRT  165 (731)
T ss_dssp             EEEEETTCCCCSEEEEECCCCCSSCE---------EEEEEECCCTTSCEEEEEEEEECSSCCEEEEC-CBEEESSCCSSS
T ss_pred             EEEecCCCCccceeEEEeCCcCCcee---------EEEEEEeecCCCceEEEEEEEecCCceEEEEe-eEEeeecccccc
Confidence            55666677888999999997643211         1134454442222 367777776666654322 122221 23356


Q ss_pred             CccccccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEec--CCCccccCCCeE-EEeeCCeEEEEEcccCCCC
Q psy16863        243 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRA--QGDHPIFGNRFR-AINRDGRTELNIRRVRRDD  319 (1075)
Q Consensus       243 p~~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~--~~~~~~~~~~~~-~~~~~~~~~L~I~~~~~~d  319 (1075)
                      |.|. .+.+..+.+|+.++|.|.+.+          .+.+.+.||+  .++..+....+. +.......+|+|.++..+|
T Consensus       166 p~~~-~~~~~~v~~G~~v~l~C~~~g----------~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d  234 (731)
T 2v5y_A          166 PHFL-RIQNVEVNAGQFATFQCSAIG----------RTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRD  234 (731)
T ss_dssp             CEEC-CCCCEEEETTSCEEEEEEEES----------CCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTT
T ss_pred             cccc-cccceEEeCCCcEEEEEEeCC----------CCCCceeEEEecCCCccccccceEEeccccceEEEEEccccccc
Confidence            6666 667899999999999887764          3445566554  455554422211 1111223589999999999


Q ss_pred             CEEEEEEEEeCCee-EEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEec---CCC---cEEEEEECCEecCC
Q psy16863        320 GGRYSVTASNESGY-STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS---PTE---IKIHWYRNDRKLEE  392 (1075)
Q Consensus       320 ~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g---~p~---~~v~W~k~g~~l~~  392 (1075)
                      .|.|+|.|.|..|. .+..+.|.|..    +|.+...+.... .....+.|.|....   ..+   ..|.|.+.+..   
T Consensus       235 ~g~Y~c~A~n~~G~~~s~~~~l~V~~----~P~~~~~p~~~~-~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~---  306 (731)
T 2v5y_A          235 AGKYRCMIRTEGGVGISNYAELVVKE----PPVPIAPPQLAS-VGATYLWIQLNANSINGDGPIVAREVEYCTASGS---  306 (731)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEEEC----CCCBSSCCEEEE-ECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSS---
T ss_pred             CeEEEEEEECCCCCcceeeEEEEEec----CCCCCCCcceec-cCCceEEEEeCCcccCCCCccEEEEEEEEECCCC---
Confidence            99999999999997 67777888875    333322222222 23467888887532   111   16677664321   


Q ss_pred             CCcEEEEEcCCEEEEEEcccCCCCceeEEEEEE--eCCCceeeEEEEEeecCCCC--CCCeeeeecceEEecCCeEEEEE
Q psy16863        393 NKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAE--NAVGRSHCSCELSVLVPKAY--KAPFFTKELEAILTEQGTVSLEC  468 (1075)
Q Consensus       393 ~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~--n~~g~~~~s~~l~V~~~~~~--~~p~~~~~~~~~~~~g~~v~l~C  468 (1075)
                        ...+. ......+.|.++...+.+.|+|.|.  |..|....+..+.+...+..  .+|.   .+.........+.|..
T Consensus       307 --~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~---~~~~~~~~~~sv~l~W  380 (731)
T 2v5y_A          307 --WNDRQ-PVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPR---KLEVVEVKSRQITIRW  380 (731)
T ss_dssp             --CEEEE-ECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCCCSCCCE---EEEEEEECSSCEEEEE
T ss_pred             --ceEEe-ccCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecCCCCCCCCc---eeEEEeccCCeEEEEE
Confidence              11121 1222457889999999999999999  99998765555555543321  1222   1111223345677877


Q ss_pred             EEECC-----CC--CeEEEEeCC--E-------e-ccCCCEEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEeccc
Q psy16863        469 KVMGI-----PT--PQLIWYKDN--K-------K-IKAGDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQ  531 (1075)
Q Consensus       469 ~~~g~-----p~--~~v~W~~~g--~-------~-l~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~~  531 (1075)
                      .....     +.  ..|.|...+  .       . ........+.+..+.......|++.|.|..|... +..+.+....
T Consensus       381 ~~p~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~-S~~~~~~T~~  459 (731)
T 2v5y_A          381 EPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-SQELIVQTDE  459 (731)
T ss_dssp             ECCCHHHHCSSSCEEEEEEEEESSSSEEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEEE-CCCEEEECCC
T ss_pred             ECCCcccccceeeeEEEEEEEccCCCCccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCCC-CceEEEEccC
Confidence            75321     11  245554432  1       0 1123345677888888888889999999999864 4444444210


Q ss_pred             cccCCCCCCcCCCCCCCCCCeeeeeccceEe-ecCCeEEEEEEEecCCC----CceEEEEeCCeE---Eec-CCcEEEEE
Q psy16863        532 SFLDNDDVPFNSLMPPGPAPIFIKEVENVKA-KIGTSAILECQVLVPPW----PRSIYWYNKEGV---VEA-SDKYHIMA  602 (1075)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~G~~~~L~C~~~~~p~----p~~v~W~~~~~~---i~~-~~~~~~~~  602 (1075)
                                  ..| .+++.     ..+.. .....+.|.+.....+.    ...|.|...+..   ... .....+..
T Consensus       460 ------------~~P-~~p~~-----~~~~~~~~~~si~l~W~~P~~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~  521 (731)
T 2v5y_A          460 ------------DLP-GAVPT-----ESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSK  521 (731)
T ss_dssp             ------------CCC-CCCCT-----TTCEEEEETTEEEEECCCCSCCSSCCCEEEEEEEEEEECC---CCCCCEEEEEE
T ss_pred             ------------CCC-CCCCc-----ceEEeeecCCeEEEEEcCCCCCCCCccceEEEEEECcCCCccccccCcceEEee
Confidence                        011 11111     01111 12567888887543221    123444432211   000 11222222


Q ss_pred             cCCceEEEEEeeeeecCCceEEEEEECCCCceeee
Q psy16863        603 DGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFS  637 (1075)
Q Consensus       603 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  637 (1075)
                      .+ ....++|.++.+...+.|+..|.|..|....+
T Consensus       522 ~~-~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s  555 (731)
T 2v5y_A          522 LG-NETHFLFFGLYPGTTYSFTIRASTAKGFGPPA  555 (731)
T ss_dssp             ET-TCCEEEECSCCTTEEEEEEEEEEETTEEEEEE
T ss_pred             cC-CcceEEecCCCCCCEEEEEEEEEeCCccCCCc
Confidence            22 23478899999999999999999999887654

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.72  E-value=2.9e-17  Score=168.93  Aligned_cols=163  Identities=15%  Similarity=0.172  Sum_probs=111.5

Q ss_pred             cceeeeecCCeEEEEEEEecCC--CCeEEEEECC--EEee------------cCCcEEEEEeeCcEEEEEEccccCCCCe
Q psy16863        755 LKSCQATVNEEFKFTVQVSISP--EPKVSWFRDD--QQVV------------ESDNVKILKETLGVCHLKIHALEVADQA  818 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p--~p~v~W~k~g--~~i~------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G  818 (1075)
                      +....+.+|+++.|.|.+.+.+  .+.|.|+|++  ..+.            ...++.+.. ..+...|.|.+++.+|+|
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G   85 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSK-SGTSATLGITGLQTGDEA   85 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE-ETTEEEEEECSCCGGGCE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEec-cCCEEEEEECCCCcccCE
Confidence            3456789999999999964433  5799999954  2211            134666654 445779999999999999


Q ss_pred             EEEEEEEeCCce--EEEEEEEEEEecCCCCCCeeeeec-ceeecCCCeEEEEEEEEcc-CCC-eeEEEECCEEcCCCC--
Q psy16863        819 EWKCIATNDFGQ--SITSCFLKLNVPKHYKKPKFLEEL-KAVLSEGGAVNLECKVIGV-PQP-TLKWFKDGRELKAGD--  891 (1075)
Q Consensus       819 ~Y~C~A~N~~G~--~~~s~~l~V~~~~~~~~p~~~~~~-~~~~~~g~~~~L~C~v~g~-p~p-~v~W~k~g~~l~~~~--  891 (1075)
                      .|+|.|.|..|.  ......|.|..+  ..+|.+.... ......|+.++|.|.+.|. |.| .|+|+|||.++..+.  
T Consensus        86 ~Y~C~~~~~~~~~~~~~~~~l~V~~~--~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~  163 (216)
T 2xzc_L           86 DYYCGTWDSSLNPVFGGGTKLEIKRT--VAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQE  163 (216)
T ss_dssp             EEEEEEECTTSCEEEBCCEEEEECCC--CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEE
T ss_pred             EEEEEEEeCCCcceECCCEEEEEcCC--CCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeE
Confidence            999999998872  122345666432  2345544321 1122368899999999984 554 899999999986551  


Q ss_pred             ----------ee----EEEECCCCceeeEEEEEEEEeCCeeEE
Q psy16863        892 ----------IH----KIISGEDGTCCLGIYTCEAHNCMGTTS  920 (1075)
Q Consensus       892 ----------~~----~i~~~~~~~~d~G~Y~C~a~N~~G~~~  920 (1075)
                                .+    .|.+......|+|.|+|.|.|......
T Consensus       164 ~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  206 (216)
T 2xzc_L          164 SVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP  206 (216)
T ss_dssp             EECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred             ecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCc
Confidence                      01    233333344579999999999876543

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.72  E-value=3.4e-17  Score=171.54  Aligned_cols=216  Identities=12%  Similarity=0.081  Sum_probs=123.2

Q ss_pred             CCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEecc----------CCCEEEEEeCCCCCCCcEEEEEEEEec
Q psy16863        446 KAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK----------AGDIFALTANPKDPSSLGTYTCEAVNC  515 (1075)
Q Consensus       446 ~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~----------~~~~~~l~i~~~~~~d~G~Y~C~a~n~  515 (1075)
                      .+|.+...+...+.+|++++|.|.+.+ +.+.|.|+|+|..+.          ......|.|..+..+|+|.|+|.+.|.
T Consensus         6 ~kP~i~~~P~~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~   84 (257)
T 1b6u_A            6 RKPSLLAHPGPLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVT   84 (257)
T ss_dssp             CCCEECCBSCSEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECS
T ss_pred             CCCEEEEcCCCEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEecc
Confidence            456666666666889999999999975 567999999987653          224568999999999999999999875


Q ss_pred             ce-----eeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEecCCCCceEEEEeCCe
Q psy16863        516 MG-----AAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG  590 (1075)
Q Consensus       516 ~g-----~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~  590 (1075)
                      .+     ..+....|.|.+.                 .++|.+...+. ..+.+|+.++|.|.+.+.+ + .+.|+|++.
T Consensus        85 ~~~~~~s~~S~~~~L~V~~~-----------------~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~~-~-~~~w~k~g~  144 (257)
T 1b6u_A           85 HSPYQLSAPSDPLDIVITGL-----------------YEKPSLSAQPG-PTVLAGESVTLSCSSRSSY-D-MYHLSREGE  144 (257)
T ss_dssp             SCTTSCCCCCCCEEEEEECS-----------------SCCCEEECSSC-TTCBTTCEEEEEEECSSCC-S-EEEEEETTS
T ss_pred             CCCccccccCCCEEEecccC-----------------CCCcceEccCC-CccCCCCEEEEEEeCCCCC-c-EEEEEECCc
Confidence            32     2234456666531                 12344443333 3578999999999988764 4 899999998


Q ss_pred             EEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCc----eeeeeEEEEEeCCCCcCCCceeeccceeeecCC
Q psy16863        591 VVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGV----KQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDG  666 (1075)
Q Consensus       591 ~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~----~~~~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~  666 (1075)
                      .+...........+.....|.|.+++  |+|.|+|.|.|..+.    .......|.|..++....|...   ......|.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~---~~~~~~g~  219 (257)
T 1b6u_A          145 AHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPT---EPSSETGN  219 (257)
T ss_dssp             SCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-------------------
T ss_pred             ccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCCc---ccCccCCC
Confidence            77544322222222234689999998  999999999976432    2222234555444322111110   11233577


Q ss_pred             eEEEEEEEecCCCCeEEEEECC
Q psy16863        667 LVSFECKVVGFPTPTLQWFKDN  688 (1075)
Q Consensus       667 ~~~l~C~v~g~p~p~v~W~k~g  688 (1075)
                      .+.|.|.+ |.+.+.+.|..-+
T Consensus       220 ~~~l~~~~-~~~~~~~~~~~~~  240 (257)
T 1b6u_A          220 PRHLHAAA-EQKLISEEDLNLD  240 (257)
T ss_dssp             ----------------------
T ss_pred             eEEEEEEE-cchHHHHHHhhhh
Confidence            88899877 6788889998744

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.72  E-value=9.4e-17  Score=168.15  Aligned_cols=168  Identities=13%  Similarity=0.149  Sum_probs=117.4

Q ss_pred             EEeccceeeeecCCeEEEEEEEecCCCCeEEEEECC--E---Eee---------cCCcEEEEEeeCcEEEEEEccccCCC
Q psy16863        751 FIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDD--Q---QVV---------ESDNVKILKETLGVCHLKIHALEVAD  816 (1075)
Q Consensus       751 ~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g--~---~i~---------~~~~~~~~~~~~~~~~L~I~~~~~~D  816 (1075)
                      +...+....+.+|++++|.|.+.+.|.+.+.|+|++  .   .+.         ...++.+.. ..+...|.|.+++.+|
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D   82 (242)
T 2znx_A            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSG-SGTDFTLSINSVETED   82 (242)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-ETTEEEEEESSCCGGG
T ss_pred             EEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEec-CCCEEEEEECCCChHH
Confidence            445566778999999999999999999999999953  1   111         134666654 3456789999999999


Q ss_pred             CeEEEEEEEeCCceEE-EEEEEEEEecCCC--------CCC-eeeeecceeecCCCeEEEEEEEEccC--CCeeEEEEC-
Q psy16863        817 QAEWKCIATNDFGQSI-TSCFLKLNVPKHY--------KKP-KFLEELKAVLSEGGAVNLECKVIGVP--QPTLKWFKD-  883 (1075)
Q Consensus       817 ~G~Y~C~A~N~~G~~~-~s~~l~V~~~~~~--------~~p-~~~~~~~~~~~~g~~~~L~C~v~g~p--~p~v~W~k~-  883 (1075)
                      +|.|.|.|.|..+... ....|.|..++..        ..+ .+.......+.+|++++|.|.+.|.|  .+.|.|||+ 
T Consensus        83 ~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~  162 (242)
T 2znx_A           83 FGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKF  162 (242)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             CEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeC
Confidence            9999999999865322 2456777665420        112 22333334578999999999999986  478999994 


Q ss_pred             -CEEcC---------------------------CCCeeEEEECCCCceeeEEEEEEEEeC--CeeE
Q psy16863        884 -GRELK---------------------------AGDIHKIISGEDGTCCLGIYTCEAHNC--MGTT  919 (1075)
Q Consensus       884 -g~~l~---------------------------~~~~~~i~~~~~~~~d~G~Y~C~a~N~--~G~~  919 (1075)
                       |..+.                           .+....|.+......|+|.|+|.|.|.  .|..
T Consensus       163 ~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~fG~g  228 (242)
T 2znx_A          163 PGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDGDYXGQG  228 (242)
T ss_dssp             TTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTSSCBCCC
T ss_pred             CCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCCcccCCC
Confidence             33220                           112346777788889999999999993  4543

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.72  E-value=5.1e-17  Score=166.40  Aligned_cols=184  Identities=11%  Similarity=0.113  Sum_probs=128.1

Q ss_pred             cceeeccceeEEEEEecCCCceEEEEec-CCCeeeEEecCCCc-cccCCCeEEEeeCCeEEEEEcccCCCCCEEEEEEEE
Q psy16863        251 DIAVKVGTRARLLVEIRSPTEIKCQFDL-NNTIPFSFRAQGDH-PIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTAS  328 (1075)
Q Consensus       251 ~~~v~~g~~~~l~c~~~~~~~~~c~~~~-~~~~~~~w~~~~~~-~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~  328 (1075)
                      .+.+.+|+.++|.|.+.+.+.+.|.... +.......+..+.. .....++.+....+..+|+|.+++.+|+|.|+|.|.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   88 (211)
T 3tv3_L            9 SASGSPGQSITISCTGTSNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCGSL   88 (211)
T ss_dssp             EEEECTTCEEEEEEECCCSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEEEE
T ss_pred             eEEEcCCCCEEEEEEECCCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEEEe
Confidence            6788999999999988722333332211 11111111111111 112467777777788899999999999999999999


Q ss_pred             eCCe--eEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecC--CCcEEEEEECCEecCCCCcE---EEEEc
Q psy16863        329 NESG--YSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSP--TEIKIHWYRNDRKLEENKIY---RTQHD  401 (1075)
Q Consensus       329 n~~g--~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~--p~~~v~W~k~g~~l~~~~~~---~~~~~  401 (1075)
                      |..+  .....+.|.|......+|.+...+....+.+|+.++|.|.+.|.  |.+.+.|+|||..+..+...   ....+
T Consensus        89 ~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~  168 (211)
T 3tv3_L           89 VGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSN  168 (211)
T ss_dssp             ETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTT
T ss_pred             cCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceECCC
Confidence            9887  45556778887544467888776666666689999999999874  46899999999988653211   11122


Q ss_pred             CCE---EEEEEcccCCCCceeEEEEEEeCCCceeeE
Q psy16863        402 GNF---YFIDLSSVSLFDSGRWTCLAENAVGRSHCS  434 (1075)
Q Consensus       402 g~~---~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s  434 (1075)
                      +..   ..|.|.++..+|+|.|+|.|.|..+....+
T Consensus       169 ~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~  204 (211)
T 3tv3_L          169 NKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT  204 (211)
T ss_dssp             SSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEE
T ss_pred             CCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEee
Confidence            322   468899999999999999999998665544

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.72  E-value=5.6e-17  Score=171.26  Aligned_cols=170  Identities=13%  Similarity=0.183  Sum_probs=120.1

Q ss_pred             ceeeeecCCeEEEEEEEecCC--CCeEEEEEC--CEEee-----------------cCCcEEEEEe-eCcEEEEEEcccc
Q psy16863        756 KSCQATVNEEFKFTVQVSISP--EPKVSWFRD--DQQVV-----------------ESDNVKILKE-TLGVCHLKIHALE  813 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~i~-----------------~~~~~~~~~~-~~~~~~L~I~~~~  813 (1075)
                      ....+.+|++++|.|.+.+.|  .+.|.|+|+  +..+.                 ...++.+..+ ..+...|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (256)
T 1nqb_A            8 GAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLT   87 (256)
T ss_dssp             CCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCC
Confidence            446788999999999999886  679999994  32221                 1356766544 2456799999999


Q ss_pred             CCCCeEEEEEEEeCCce-----EEEEEEEEEEecCCCCCCeeeeecce-eecCCCeEEEEEEEEccCCC-----eeEEEE
Q psy16863        814 VADQAEWKCIATNDFGQ-----SITSCFLKLNVPKHYKKPKFLEELKA-VLSEGGAVNLECKVIGVPQP-----TLKWFK  882 (1075)
Q Consensus       814 ~~D~G~Y~C~A~N~~G~-----~~~s~~l~V~~~~~~~~p~~~~~~~~-~~~~g~~~~L~C~v~g~p~p-----~v~W~k  882 (1075)
                      .+|+|.|+|.|.|..|.     ......|.|..+     |.+...+.. .+.+|++++|.|.+.|.|.+     .|.|||
T Consensus        88 ~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~-----~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k  162 (256)
T 1nqb_A           88 SEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSD-----IELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYL  162 (256)
T ss_dssp             GGGCEEEEEEECCTTSSSSCSEECCCEEEEECCC-----CCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEE
T ss_pred             hhhCEEEEEEEeeccCccceeEEcCceeeeeccc-----ccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEE
Confidence            99999999999998773     112345666532     334443333 47899999999999998876     899999


Q ss_pred             --CCEEcC---------------------CCCeeEEEECCCCceeeEEEEEEEEeCCeeEEE-EEEEEEecC
Q psy16863        883 --DGRELK---------------------AGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSS-SAALLGFED  930 (1075)
Q Consensus       883 --~g~~l~---------------------~~~~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~-~~~l~v~~~  930 (1075)
                        +|..+.                     .+....|.+......|+|.|+|.|.|..+..-. ...|.|..+
T Consensus       163 ~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~  234 (256)
T 1nqb_A          163 QKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKRA  234 (256)
T ss_dssp             ECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC-
T ss_pred             ECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEECC
Confidence              665431                     012346778888889999999999996543322 334555433

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.72  E-value=1.3e-17  Score=172.26  Aligned_cols=167  Identities=16%  Similarity=0.244  Sum_probs=116.7

Q ss_pred             eeeeecCCeEEEEEEEecCC--CCeEEEEECC--EE---ee----------------cCCcEEEEEee-CcEEEEEEccc
Q psy16863        757 SCQATVNEEFKFTVQVSISP--EPKVSWFRDD--QQ---VV----------------ESDNVKILKET-LGVCHLKIHAL  812 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~g~p--~p~v~W~k~g--~~---i~----------------~~~~~~~~~~~-~~~~~L~I~~~  812 (1075)
                      ...+.+|+++.|.|.+.+.|  .+.+.|||++  ..   +.                ...++.+..+. .+...|.|.++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   88 (222)
T 1q9r_B            9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTL   88 (222)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             ceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcC
Confidence            45688999999999999876  7899999853  21   10                12466665432 34678999999


Q ss_pred             cCCCCeEEEEEEEeCCc-----eEEEEEEEEEEecCCCCCCeeee-ecceeecCCCeEEEEEEEEcc-CCC-eeEEEECC
Q psy16863        813 EVADQAEWKCIATNDFG-----QSITSCFLKLNVPKHYKKPKFLE-ELKAVLSEGGAVNLECKVIGV-PQP-TLKWFKDG  884 (1075)
Q Consensus       813 ~~~D~G~Y~C~A~N~~G-----~~~~s~~l~V~~~~~~~~p~~~~-~~~~~~~~g~~~~L~C~v~g~-p~p-~v~W~k~g  884 (1075)
                      +.+|+|.|.|.|.|..|     .......|.|...+ ..+|.+.. .....+.+|+.++|.|.+.|. |.| .|+|+|||
T Consensus        89 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~-~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g  167 (222)
T 1q9r_B           89 RAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAK-TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS  167 (222)
T ss_dssp             CGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSC-CBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             CcccCeEEEEEEeccCCcccceEeCCceEEEeccCC-CCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEecCC
Confidence            99999999999999764     11224567776422 23444432 222235689999999999986 888 99999999


Q ss_pred             EEcCC--------CCee----EEEECCCCceeeEEEEEEEEeCCeeEEEEEEE
Q psy16863        885 RELKA--------GDIH----KIISGEDGTCCLGIYTCEAHNCMGTTSSSAAL  925 (1075)
Q Consensus       885 ~~l~~--------~~~~----~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l  925 (1075)
                      ..+..        +..+    .|.+......| |.|+|.|.|.+|.......+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i  219 (222)
T 1q9r_B          168 LSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI  219 (222)
T ss_dssp             BCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             eEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEec
Confidence            86632        1122    23444555567 99999999999987655443

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.72  E-value=5.2e-17  Score=170.20  Aligned_cols=164  Identities=15%  Similarity=0.188  Sum_probs=118.0

Q ss_pred             EEeccceeeeecCCeEEEEEEEecCC----CCeEEEEECC--EE---ee---------cCCcEEEEEeeCcEEEEEEccc
Q psy16863        751 FIEGLKSCQATVNEEFKFTVQVSISP----EPKVSWFRDD--QQ---VV---------ESDNVKILKETLGVCHLKIHAL  812 (1075)
Q Consensus       751 ~~~~~~~~~~~~g~~~~l~C~v~g~p----~p~v~W~k~g--~~---i~---------~~~~~~~~~~~~~~~~L~I~~~  812 (1075)
                      +...+....+.+|++++|.|.+.+.|    .+.|.|+|++  ..   +.         ...++.+.. ..+.+.|.|.++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v   82 (240)
T 1moe_A            4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG-SRTDFTLIIDPV   82 (240)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSC
T ss_pred             eEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEe-cCCeEEEEEcCC
Confidence            44455667899999999999999998    7899999962  21   11         134666654 445778999999


Q ss_pred             cCCCCeEEEEEEEeCCce-EEEEEEEEEEecCCCCCC-eeee-ecceeecCCCeEEEEEEEEccCC--CeeEEEEC--CE
Q psy16863        813 EVADQAEWKCIATNDFGQ-SITSCFLKLNVPKHYKKP-KFLE-ELKAVLSEGGAVNLECKVIGVPQ--PTLKWFKD--GR  885 (1075)
Q Consensus       813 ~~~D~G~Y~C~A~N~~G~-~~~s~~l~V~~~~~~~~p-~~~~-~~~~~~~~g~~~~L~C~v~g~p~--p~v~W~k~--g~  885 (1075)
                      +.+|+|.|+|.|.|..|. ....+.|.|..++...+| .+.. +....+.+|++++|.|.+.|.|.  +.|+|||+  |.
T Consensus        83 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~  162 (240)
T 1moe_A           83 EADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQ  162 (240)
T ss_dssp             CGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTS
T ss_pred             ChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCC
Confidence            999999999999998664 233567777664421122 2332 22335789999999999999874  58999996  32


Q ss_pred             EcC----------------------------CCCeeEEEECCCCceeeEEEEEEEEeC
Q psy16863        886 ELK----------------------------AGDIHKIISGEDGTCCLGIYTCEAHNC  915 (1075)
Q Consensus       886 ~l~----------------------------~~~~~~i~~~~~~~~d~G~Y~C~a~N~  915 (1075)
                      .+.                            .+....|.+......|+|.|+|.|.+.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  220 (240)
T 1moe_A          163 GLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFGY  220 (240)
T ss_dssp             CCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECST
T ss_pred             CcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEec
Confidence            220                            012345777888889999999999853

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.72  E-value=4.1e-17  Score=168.23  Aligned_cols=167  Identities=14%  Similarity=0.246  Sum_probs=118.4

Q ss_pred             ecCceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEecC-----------------CCCcEEEEEc--CCEEEEEEcc
Q psy16863        355 RLHDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRKLE-----------------ENKIYRTQHD--GNFYFIDLSS  411 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~l~-----------------~~~~~~~~~~--g~~~~L~I~~  411 (1075)
                      .+..+.+.+|++++|.|.+.+.+  .+.|.|||+  |..+.                 ...|+.+..+  +....|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (219)
T 1c1e_H            6 QSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINN   85 (219)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECS
T ss_pred             CCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECC
Confidence            34567889999999999998865  689999997  33221                 1346665543  3456899999


Q ss_pred             cCCCCceeEEEEEEeCCCce----eeEEEEEeecCCCCCCCeeee-ecceEEecCCeEEEEEEEEC-CCCC-eEEEEeCC
Q psy16863        412 VSLFDSGRWTCLAENAVGRS----HCSCELSVLVPKAYKAPFFTK-ELEAILTEQGTVSLECKVMG-IPTP-QLIWYKDN  484 (1075)
Q Consensus       412 v~~~d~G~Y~C~a~n~~g~~----~~s~~l~V~~~~~~~~p~~~~-~~~~~~~~g~~v~l~C~~~g-~p~~-~v~W~~~g  484 (1075)
                      ++.+|+|.|+|.|.|..+..    .....|.|...+. .+|.+.. .+...+.+|+.+.|.|.+.| .|.| .|+|+|+|
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~-~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g  164 (219)
T 1c1e_H           86 LKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKT-TPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS  164 (219)
T ss_dssp             CCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCC-BCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             CCcccCEEEEEEEeccCcccceeecCceEEEEecCCC-CCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCC
Confidence            99999999999999986421    2346677766322 2344432 22233568999999999998 8998 99999999


Q ss_pred             EeccC--------CCE----EEEEeCCCCCCCcEEEEEEEEecceeeEEEE
Q psy16863        485 KKIKA--------GDI----FALTANPKDPSSLGTYTCEAVNCMGAAFSTS  523 (1075)
Q Consensus       485 ~~l~~--------~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  523 (1075)
                      ..+..        ...    ..|.|..... |.|.|+|.|.|..|......
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~~~~  214 (219)
T 1c1e_H          165 LSSGVHTFPAVLQSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKVDK  214 (219)
T ss_dssp             BCTTEEECCCEESSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEEEEE
T ss_pred             cccceEecCCcccCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCccEEE
Confidence            86421        111    2577744443 56999999999988765444

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.72  E-value=7.5e-18  Score=175.87  Aligned_cols=171  Identities=17%  Similarity=0.165  Sum_probs=115.7

Q ss_pred             CeEEeccceeeeecCCeEEEEEEEecCCC-C-eEEEEECC--EEe---e---------cCCcEEEEEeeCcEEEEEEccc
Q psy16863        749 PKFIEGLKSCQATVNEEFKFTVQVSISPE-P-KVSWFRDD--QQV---V---------ESDNVKILKETLGVCHLKIHAL  812 (1075)
Q Consensus       749 p~~~~~~~~~~~~~g~~~~l~C~v~g~p~-p-~v~W~k~g--~~i---~---------~~~~~~~~~~~~~~~~L~I~~~  812 (1075)
                      +.+.. +....+.+|++++|.|.+.+.|. + .+.|||++  ..+   .         ...++.+.. ..+...|.|.++
T Consensus        21 ~~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v   98 (234)
T 2j6e_L           21 SVLTQ-PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSK-SGTSASLAISGL   98 (234)
T ss_dssp             CCCBC-CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEE-ETTEEEEEEESC
T ss_pred             cEEeC-CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEe-cCCeEEEEECCC
Confidence            33444 56677999999999999998653 4 79999963  222   0         124666554 345679999999


Q ss_pred             cCCCCeEEEEEEEeCCce---EEEEEEEEEEecCCCCCCeeee-ecceeecCCCeEEEEEEEEccCCC--eeEEEECCEE
Q psy16863        813 EVADQAEWKCIATNDFGQ---SITSCFLKLNVPKHYKKPKFLE-ELKAVLSEGGAVNLECKVIGVPQP--TLKWFKDGRE  886 (1075)
Q Consensus       813 ~~~D~G~Y~C~A~N~~G~---~~~s~~l~V~~~~~~~~p~~~~-~~~~~~~~g~~~~L~C~v~g~p~p--~v~W~k~g~~  886 (1075)
                      +.+|+|.|+|.|.|..|.   ......|.|...+. .+|.+.. .......+|+.++|.|.+.|.+++  .|+|+|||.+
T Consensus        99 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~-~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~  177 (234)
T 2j6e_L           99 RSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPK-AAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAP  177 (234)
T ss_dssp             CSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCC-CCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEE
T ss_pred             CHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCC-CCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEE
Confidence            999999999999999883   22234555532211 2344332 111123468899999999986543  8999999999


Q ss_pred             cCCCCe---------------eEEEECCCCceeeEEEEEEEEeCCeeEEEE
Q psy16863        887 LKAGDI---------------HKIISGEDGTCCLGIYTCEAHNCMGTTSSS  922 (1075)
Q Consensus       887 l~~~~~---------------~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~  922 (1075)
                      +..+..               ..|.+......|+|.|+|.|.|..+....+
T Consensus       178 l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~  228 (234)
T 2j6e_L          178 VKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT  228 (234)
T ss_dssp             CCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEE
T ss_pred             CCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEe
Confidence            864311               123333444467999999999998875433

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.72  E-value=7.5e-17  Score=165.48  Aligned_cols=167  Identities=16%  Similarity=0.211  Sum_probs=122.1

Q ss_pred             CeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECC---Ee--c---------CCCCcEEEEEcCCEEEEEEcccCCC
Q psy16863        350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRND---RK--L---------EENKIYRTQHDGNFYFIDLSSVSLF  415 (1075)
Q Consensus       350 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g---~~--l---------~~~~~~~~~~~g~~~~L~I~~v~~~  415 (1075)
                      |.+...+..+.+.+|++++|.|.+.+.|.+.|.|||.+   ..  +         ....++.+...+....|.|.+++.+
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   81 (213)
T 3r06_A            2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESE   81 (213)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcc
Confidence            44566677889999999999999999889999999932   11  0         1245677766777788999999999


Q ss_pred             CceeEEEEEEeCCCce-eeEEEEEeecCCCCCCCeeeeecc-eEEecCCeEEEEEEEECCCC--CeEEEEeCCEeccCCC
Q psy16863        416 DSGRWTCLAENAVGRS-HCSCELSVLVPKAYKAPFFTKELE-AILTEQGTVSLECKVMGIPT--PQLIWYKDNKKIKAGD  491 (1075)
Q Consensus       416 d~G~Y~C~a~n~~g~~-~~s~~l~V~~~~~~~~p~~~~~~~-~~~~~g~~v~l~C~~~g~p~--~~v~W~~~g~~l~~~~  491 (1075)
                      |+|.|+|.|.|..+.. .....|.|...  ..+|.+..... .....|+.+.|.|.+.|.|+  +.++|+|+|+.+..+.
T Consensus        82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~--~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~  159 (213)
T 3r06_A           82 DIGSYYCQQYYNYPWTFGPGTKLEIKRA--DAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGV  159 (213)
T ss_dssp             GCSEEEEEECSSSSCEECCCEEEEECCC--CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTE
T ss_pred             cCEEEEEecccCCceEEcCCceEEEecc--CCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCce
Confidence            9999999999876532 33456666332  23455544332 23456888999999998654  3899999999886531


Q ss_pred             ------------E----EEEEeCCCCCCCcEEEEEEEEeccee
Q psy16863        492 ------------I----FALTANPKDPSSLGTYTCEAVNCMGA  518 (1075)
Q Consensus       492 ------------~----~~l~i~~~~~~d~G~Y~C~a~n~~g~  518 (1075)
                                  .    ..|.+......|+|.|+|.|.|....
T Consensus       160 ~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~  202 (213)
T 3r06_A          160 LQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTST  202 (213)
T ss_dssp             EEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred             EeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccC
Confidence                        1    14556666667899999999997643

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.71  E-value=2.9e-16  Score=162.33  Aligned_cols=186  Identities=12%  Similarity=0.156  Sum_probs=123.3

Q ss_pred             cccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCC--------Cccc-------cCCCeEEEee---CCeEEE
Q psy16863        249 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG--------DHPI-------FGNRFRAINR---DGRTEL  310 (1075)
Q Consensus       249 ~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~--------~~~~-------~~~~~~~~~~---~~~~~L  310 (1075)
                      ...+.+.+|+.++|.|.+.+.+..     ......+.|++++        +...       ...+..+..+   .+..+|
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~p~~-----~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L   82 (222)
T 3sbw_C            8 KDLYVVEYGSNMTIECKFPVEKQL-----DLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAAL   82 (222)
T ss_dssp             CSEEEEETTSCEEEEEECCCCSSC-----CTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEE
T ss_pred             CccEEEEcCCcEEEEeEecCCCCC-----CCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEE
Confidence            345678899999999997532210     0113345565543        1100       1234444322   245689


Q ss_pred             EEcccCCCCCEEEEEEEEeCCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEEC-CEe
Q psy16863        311 NIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN-DRK  389 (1075)
Q Consensus       311 ~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~-g~~  389 (1075)
                      .|.+++.+|+|.|+|.|.| .|.....+.|.|..    +|..........+.+|+.++|.|.+.|.|.+.|+|+++ |..
T Consensus        83 ~I~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~----~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~  157 (222)
T 3sbw_C           83 QITDVKLQDAGVYRCMISY-GGADYKRITVKVNA----PYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQV  157 (222)
T ss_dssp             EESSCCGGGCEEEEEEEES-SSEEEEEEEEEEEB----CCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCE
T ss_pred             EEcCcccccCeEEEEEEEe-CCCceeEEEEEEEC----CCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCce
Confidence            9999999999999999999 66677788888885    22222111223678999999999999999999999999 666


Q ss_pred             cCCCCcEEE--EEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeecCCC
Q psy16863        390 LEENKIYRT--QHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKA  444 (1075)
Q Consensus       390 l~~~~~~~~--~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~  444 (1075)
                      +........  ..++....+.+..+..+|.|.|+|.|.|..|....++.|.|..+|.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p~  214 (222)
T 3sbw_C          158 LSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPL  214 (222)
T ss_dssp             ECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC--
T ss_pred             ecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCcc
Confidence            654332222  2334444344445567899999999999999999898888876543

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.71  E-value=9.3e-17  Score=171.90  Aligned_cols=168  Identities=14%  Similarity=0.203  Sum_probs=118.8

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCE-----Eee---------cCCcEEEEEeeCcEEEEEEcccc
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQ-----QVV---------ESDNVKILKETLGVCHLKIHALE  813 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~-----~i~---------~~~~~~~~~~~~~~~~L~I~~~~  813 (1075)
                      .+.+...+....+.+|++++|.|.+.+.|.+.|.|+|++.     .+.         ...++.+.. ..+...|.|.+++
T Consensus        12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~   90 (276)
T 3auv_A           12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG-SGTDFTLTISSLQ   90 (276)
T ss_dssp             CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCC
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEec-cCCeEEEEEccCC
Confidence            4566777778889999999999999999999999999642     221         134666653 4457789999999


Q ss_pred             CCCCeEEEEEEEeCCceE-EEEEEEEEEecCC---------CCCCeee-eecceeecCCCeEEEEEEEEccC--CCeeEE
Q psy16863        814 VADQAEWKCIATNDFGQS-ITSCFLKLNVPKH---------YKKPKFL-EELKAVLSEGGAVNLECKVIGVP--QPTLKW  880 (1075)
Q Consensus       814 ~~D~G~Y~C~A~N~~G~~-~~s~~l~V~~~~~---------~~~p~~~-~~~~~~~~~g~~~~L~C~v~g~p--~p~v~W  880 (1075)
                      .+|+|.|+|.|.|..+.. .....|.|..++.         ..++.++ .+....+.+|++++|.|.+.|.|  .+.|.|
T Consensus        91 ~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W  170 (276)
T 3auv_A           91 PEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHW  170 (276)
T ss_dssp             GGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEE
T ss_pred             hhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEE
Confidence            999999999999986542 2235677765432         1112222 22334578999999999999987  489999


Q ss_pred             EECC--EEc------C------------C----------CCeeEEEECCCCceeeEEEEEEEEeCC
Q psy16863        881 FKDG--REL------K------------A----------GDIHKIISGEDGTCCLGIYTCEAHNCM  916 (1075)
Q Consensus       881 ~k~g--~~l------~------------~----------~~~~~i~~~~~~~~d~G~Y~C~a~N~~  916 (1075)
                      ||++  ..+      .            .          +....|.+......|+|.|+|.|.|..
T Consensus       171 ~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~  236 (276)
T 3auv_A          171 VRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFF  236 (276)
T ss_dssp             EEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             EEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCc
Confidence            9963  211      0            0          112367778888899999999999983

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.71  E-value=1.2e-16  Score=168.88  Aligned_cols=170  Identities=12%  Similarity=0.204  Sum_probs=119.5

Q ss_pred             CeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECC--E---Ee----------ecCCcEEEEE-eeCcEEEEEEccc
Q psy16863        749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDD--Q---QV----------VESDNVKILK-ETLGVCHLKIHAL  812 (1075)
Q Consensus       749 p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g--~---~i----------~~~~~~~~~~-~~~~~~~L~I~~~  812 (1075)
                      ..+...+....+.+|++++|.|.+.+.|.+.+.|||..  .   .+          ....++.+.. ...+...|.|.++
T Consensus         4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   83 (256)
T 3tf7_C            4 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASV   83 (256)
T ss_dssp             CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSC
T ss_pred             cEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCC
Confidence            34555667788999999999999999999999999832  1   11          1234555532 2345778999999


Q ss_pred             cCCCCeEEEEEEEeCCceE----EEEEEEEEEec---------------CCCCCCeeeeeccee-ecCCCeEEEEEEEEc
Q psy16863        813 EVADQAEWKCIATNDFGQS----ITSCFLKLNVP---------------KHYKKPKFLEELKAV-LSEGGAVNLECKVIG  872 (1075)
Q Consensus       813 ~~~D~G~Y~C~A~N~~G~~----~~s~~l~V~~~---------------~~~~~p~~~~~~~~~-~~~g~~~~L~C~v~g  872 (1075)
                      +.+|+|.|.|.|.|..|..    .....|.|...               ....+|.+...+... +.+|++++|.|.+.+
T Consensus        84 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~  163 (256)
T 3tf7_C           84 HRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTN  163 (256)
T ss_dssp             CGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECS
T ss_pred             CcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCC
Confidence            9999999999999986521    12346666641               122345555554443 669999999999988


Q ss_pred             cCCCeeEEEECC--EE---cC----------------------CCCeeEEEECCCCceeeEEEEEEEEeCCeeE
Q psy16863        873 VPQPTLKWFKDG--RE---LK----------------------AGDIHKIISGEDGTCCLGIYTCEAHNCMGTT  919 (1075)
Q Consensus       873 ~p~p~v~W~k~g--~~---l~----------------------~~~~~~i~~~~~~~~d~G~Y~C~a~N~~G~~  919 (1075)
                      . .|.+.|||++  ..   +.                      .+....|.+......|+|.|+|.|.|..|..
T Consensus       164 ~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~  236 (256)
T 3tf7_C          164 S-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQL  236 (256)
T ss_dssp             C-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTEE
T ss_pred             C-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCcc
Confidence            7 7799999832  11   10                      1234467888888899999999999987754

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.71  E-value=8.2e-17  Score=165.37  Aligned_cols=175  Identities=22%  Similarity=0.203  Sum_probs=130.8

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecC--CcEEEEEeeCcEEEEEEccccCCCCeEEEEEE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVES--DNVKILKETLGVCHLKIHALEVADQAEWKCIA  824 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A  824 (1075)
                      .+|.| ..+.+..+..|+.+.|.|.+.|.|.|.|+|+|+|..+..+  .++.+... .....|.|.+++.+|+|.|+|.|
T Consensus        18 ~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a   95 (215)
T 3mtr_A           18 YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNT-PSASYLEVTPDSENDFGNYNCTA   95 (215)
T ss_dssp             EEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEE-TTEEEEEECCCSGGGCEEEEEEE
T ss_pred             cCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecC-CCeeEEEEecCChhhCeEEEEEE
Confidence            57777 4566688999999999999999999999999999999766  45665543 34678999999999999999999


Q ss_pred             EeCCceEEEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEE----EccCCC--eeEEEECCEEcCCC--------
Q psy16863        825 TNDFGQSITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKV----IGVPQP--TLKWFKDGRELKAG--------  890 (1075)
Q Consensus       825 ~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v----~g~p~p--~v~W~k~g~~l~~~--------  890 (1075)
                      .|..|....++.|.|..+|.  +|.....    ...+..+.|.|..    .|.|.+  .+.|.++|......        
T Consensus        96 ~n~~g~~~~~~~l~v~~~P~--~p~~~~~----~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~  169 (215)
T 3mtr_A           96 VNRIGQESLEFILVQADTPS--SPSIDQV----EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA  169 (215)
T ss_dssp             ECSSCEEEEEEEEEECCCCC--CCEEEEE----EEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHH
T ss_pred             EECCCceEEEEEEEECCCCC--CCcceEE----EEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccccccccccc
Confidence            99999998888888876543  3432221    2345788999973    233433  37899987542211        


Q ss_pred             -CeeEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEec
Q psy16863        891 -DIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFE  929 (1075)
Q Consensus       891 -~~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~  929 (1075)
                       ....+.+......+.|.|+|.|.|.+|....+..+.+..
T Consensus       170 ~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T  209 (215)
T 3mtr_A          170 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT  209 (215)
T ss_dssp             HHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEEC
T ss_pred             cccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEe
Confidence             013455566667789999999999999887766666543

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.71  E-value=1.6e-16  Score=170.59  Aligned_cols=176  Identities=14%  Similarity=0.186  Sum_probs=122.8

Q ss_pred             EeccceeeeecCCeEEEEEEEecCC--CCeEEEEECC--EEee-----------------cCCcEEEEEe-eCcEEEEEE
Q psy16863        752 IEGLKSCQATVNEEFKFTVQVSISP--EPKVSWFRDD--QQVV-----------------ESDNVKILKE-TLGVCHLKI  809 (1075)
Q Consensus       752 ~~~~~~~~~~~g~~~~l~C~v~g~p--~p~v~W~k~g--~~i~-----------------~~~~~~~~~~-~~~~~~L~I  809 (1075)
                      +..+....+.+|++++|.|.+.+.|  .+.+.|||++  ..+.                 ...++.+..+ ..+...|.|
T Consensus        30 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I  109 (282)
T 1qok_A           30 LQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQL  109 (282)
T ss_dssp             EEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEE
T ss_pred             EECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEE
Confidence            3445567899999999999999885  6899999964  2110                 1356666543 234678999


Q ss_pred             ccccCCCCeEEEEEEEeCCc---eEE--EEEEEEEEecCC----------CCCCeeeeecce-eecCCCeEEEEEEEEcc
Q psy16863        810 HALEVADQAEWKCIATNDFG---QSI--TSCFLKLNVPKH----------YKKPKFLEELKA-VLSEGGAVNLECKVIGV  873 (1075)
Q Consensus       810 ~~~~~~D~G~Y~C~A~N~~G---~~~--~s~~l~V~~~~~----------~~~p~~~~~~~~-~~~~g~~~~L~C~v~g~  873 (1075)
                      .+++.+|+|.|.|.|.|..|   ...  ..+.|.|..++.          ..++.+...+.. .+.+|++++|.|.+.+.
T Consensus       110 ~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~  189 (282)
T 1qok_A          110 SSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSS  189 (282)
T ss_dssp             CSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSC
T ss_pred             CcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCC
Confidence            99999999999999999977   211  245677776432          123444444433 47899999999999999


Q ss_pred             CCCeeEEEE--CCEEcC---------------------CCCeeEEEECCCCceeeEEEEEEEEeCCeeEE-EEEEEEEe
Q psy16863        874 PQPTLKWFK--DGRELK---------------------AGDIHKIISGEDGTCCLGIYTCEAHNCMGTTS-SSAALLGF  928 (1075)
Q Consensus       874 p~p~v~W~k--~g~~l~---------------------~~~~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~-~~~~l~v~  928 (1075)
                      | +.|.|||  +|..+.                     .+....|.+......|+|.|+|.|.|..+..- ..+.|.|.
T Consensus       190 ~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~  267 (282)
T 1qok_A          190 V-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELK  267 (282)
T ss_dssp             C-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             C-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEe
Confidence            9 8999999  666441                     11234677888888999999999998644322 23345553

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.71  E-value=2e-17  Score=169.17  Aligned_cols=164  Identities=16%  Similarity=0.255  Sum_probs=112.6

Q ss_pred             ceeeeecCCeEEEEEEEecCC--CCeEEEEEC--CEEee----------------cCCcEEEEEee-CcEEEEEEccccC
Q psy16863        756 KSCQATVNEEFKFTVQVSISP--EPKVSWFRD--DQQVV----------------ESDNVKILKET-LGVCHLKIHALEV  814 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~i~----------------~~~~~~~~~~~-~~~~~L~I~~~~~  814 (1075)
                      ....+.+|+++.|.|.+.+.|  .+.+.|+|+  |..+.                ...++.+..+. .+.+.|.|.+++.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   87 (210)
T 3d9a_H            8 GPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTT   87 (210)
T ss_dssp             SCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCc
Confidence            445688999999999999876  489999986  32211                23567765532 3467899999999


Q ss_pred             CCCeEEEEEEEeCCceEEEEEEEEEEecCCCCCCeeee-ecceeecCCCeEEEEEEEEcc-CCC-eeEEEECCEEcCC--
Q psy16863        815 ADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLE-ELKAVLSEGGAVNLECKVIGV-PQP-TLKWFKDGRELKA--  889 (1075)
Q Consensus       815 ~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~-~~~~~~~~g~~~~L~C~v~g~-p~p-~v~W~k~g~~l~~--  889 (1075)
                      +|+|.|+|.|.|.. .......|.|...+ ..+|.+.. .....+.+|+.++|.|.+.|. |.| .|+|+|+|..+..  
T Consensus        88 ~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~-~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~  165 (210)
T 3d9a_H           88 EDTATYYCANWDGD-YWGQGTLVTVSAAK-TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHT  165 (210)
T ss_dssp             GGCEEEEEEETTSS-CBCCCEEEEECCCC-CBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE
T ss_pred             ccCEEEEEEEecCc-ccccceEEEeccCC-CCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEE
Confidence            99999999999964 11123456665321 23444432 222335689999999999997 888 9999999976421  


Q ss_pred             ------CCe----eEEEECCCCceeeEEEEEEEEeCCeeEEEE
Q psy16863        890 ------GDI----HKIISGEDGTCCLGIYTCEAHNCMGTTSSS  922 (1075)
Q Consensus       890 ------~~~----~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~  922 (1075)
                            +..    ..|.+......| |.|+|.|.|.+|.....
T Consensus       166 ~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  207 (210)
T 3d9a_H          166 FPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD  207 (210)
T ss_dssp             CCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred             cCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcccc
Confidence                  111    123333333334 99999999999987543

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.71  E-value=4.3e-17  Score=172.23  Aligned_cols=169  Identities=13%  Similarity=0.165  Sum_probs=118.6

Q ss_pred             eccceeeeecCCeEEEEEEEecCC--CCeEEEEEC--CEEe-----------------ecCCcEEEEEee-CcEEEEEEc
Q psy16863        753 EGLKSCQATVNEEFKFTVQVSISP--EPKVSWFRD--DQQV-----------------VESDNVKILKET-LGVCHLKIH  810 (1075)
Q Consensus       753 ~~~~~~~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~i-----------------~~~~~~~~~~~~-~~~~~L~I~  810 (1075)
                      ..+....+.+|++++|.|.+.+.+  .+.+.|||.  +..+                 ....++.+..+. .+.+.|.|.
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   85 (253)
T 3uzq_A            6 EQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLS   85 (253)
T ss_dssp             EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             ecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeC
Confidence            344567789999999999999855  789999992  2211                 012466665433 347789999


Q ss_pred             cccCCCCeEEEEEEEeCCceEE-EEEEEEEEec----------CCCCCCeeeeecc-eeecCCCeEEEEEEEEccCCC--
Q psy16863        811 ALEVADQAEWKCIATNDFGQSI-TSCFLKLNVP----------KHYKKPKFLEELK-AVLSEGGAVNLECKVIGVPQP--  876 (1075)
Q Consensus       811 ~~~~~D~G~Y~C~A~N~~G~~~-~s~~l~V~~~----------~~~~~p~~~~~~~-~~~~~g~~~~L~C~v~g~p~p--  876 (1075)
                      +++.+|+|.|.|.|.|..+... ....|.|...          ....+|.+...+. ..+.+|++++|.|.+.+.|.+  
T Consensus        86 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~  165 (253)
T 3uzq_A           86 SLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDRYG  165 (253)
T ss_dssp             SCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEETT
T ss_pred             CCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccccCC
Confidence            9999999999999999766542 3456666642          1122345554444 347899999999999998887  


Q ss_pred             --eeEEEEC--CEEcC---------------------CCCeeEEEECCCCceeeEEEEEEEEeCCeeEEE
Q psy16863        877 --TLKWFKD--GRELK---------------------AGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSS  921 (1075)
Q Consensus       877 --~v~W~k~--g~~l~---------------------~~~~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~  921 (1075)
                        .+.|||+  |..+.                     .+....|.+......|+|.|.|.|.|..+..-.
T Consensus       166 ~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg  235 (253)
T 3uzq_A          166 NSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFG  235 (253)
T ss_dssp             EECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBC
T ss_pred             CcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEEC
Confidence              8999994  32221                     112345788888889999999999997654433

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.71  E-value=1e-16  Score=167.61  Aligned_cols=169  Identities=15%  Similarity=0.227  Sum_probs=124.8

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECC--Ee------------cCCCCcEEEEEcCCEEEEEEcccCC
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRND--RK------------LEENKIYRTQHDGNFYFIDLSSVSL  414 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g--~~------------l~~~~~~~~~~~g~~~~L~I~~v~~  414 (1075)
                      .+.+...+..+.+.+|++++|.|.+.+.+.+.+.|||++  ..            .....++.....+....|.|.+++.
T Consensus        24 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  103 (237)
T 3sob_L           24 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP  103 (237)
T ss_dssp             CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             cceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCCh
Confidence            344556677789999999999999988888999999943  11            1224577777677778899999999


Q ss_pred             CCceeEEEEEEeCCCce-eeEEEEEeecCCCCCCCeeeeecc-eEEecCCeEEEEEEEEC-CC-CCeEEEEeCCEeccCC
Q psy16863        415 FDSGRWTCLAENAVGRS-HCSCELSVLVPKAYKAPFFTKELE-AILTEQGTVSLECKVMG-IP-TPQLIWYKDNKKIKAG  490 (1075)
Q Consensus       415 ~d~G~Y~C~a~n~~g~~-~~s~~l~V~~~~~~~~p~~~~~~~-~~~~~g~~v~l~C~~~g-~p-~~~v~W~~~g~~l~~~  490 (1075)
                      +|+|.|+|.+.|..+.. .....|.|...  ..+|.+..... ....+|+.+.|.|.+.| .| .+.|+|+|+|..+..+
T Consensus       104 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~--~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~  181 (237)
T 3sob_L          104 EDFATYYCQQSYTTPPTFGQGTKVEIKRT--VAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGN  181 (237)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEECC--CBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSS
T ss_pred             hhCeEEEEeeccCCceEEcCcEEEEEecC--CCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCc
Confidence            99999999999876532 23456676552  23455543222 22446889999999998 45 4799999999988642


Q ss_pred             C----------------EEEEEeCCCCCCCcEEEEEEEEecceee
Q psy16863        491 D----------------IFALTANPKDPSSLGTYTCEAVNCMGAA  519 (1075)
Q Consensus       491 ~----------------~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  519 (1075)
                      .                ...|.+.....+|+|.|+|.|.|.....
T Consensus       182 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  226 (237)
T 3sob_L          182 SQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS  226 (237)
T ss_dssp             EEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred             eeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCC
Confidence            1                2246777777888999999999987544

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.71  E-value=6.4e-17  Score=170.77  Aligned_cols=169  Identities=18%  Similarity=0.234  Sum_probs=118.1

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCC-----CCeEEEEECC--EE---ee---------cCCcEEEEEeeCcEEEEE
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISP-----EPKVSWFRDD--QQ---VV---------ESDNVKILKETLGVCHLK  808 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p-----~p~v~W~k~g--~~---i~---------~~~~~~~~~~~~~~~~L~  808 (1075)
                      .+.+...+..+.+.+|++++|.|.+.+.|     .+.|.|||++  ..   +.         ...++.+.. ..+.+.|.
T Consensus        34 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~  112 (252)
T 3bkj_L           34 DVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSG-SGTDFTLR  112 (252)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEE
T ss_pred             ccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEc-cCCEEEEE
Confidence            45566667778899999999999999988     6899999964  11   11         134666654 44577999


Q ss_pred             EccccCCCCeEEEEEEEeCCceEE-EEEEEEEEecCCCCCCeeeeec-ceeecCCCeEEEEEEEEcc-CCC-eeEEEECC
Q psy16863        809 IHALEVADQAEWKCIATNDFGQSI-TSCFLKLNVPKHYKKPKFLEEL-KAVLSEGGAVNLECKVIGV-PQP-TLKWFKDG  884 (1075)
Q Consensus       809 I~~~~~~D~G~Y~C~A~N~~G~~~-~s~~l~V~~~~~~~~p~~~~~~-~~~~~~g~~~~L~C~v~g~-p~p-~v~W~k~g  884 (1075)
                      |.+++.+|+|.|+|.|.|..+... ....|.|..+  ..+|.+.... ...+.+|+.++|.|.+.|. |.+ .|+|+|||
T Consensus       113 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~--~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g  190 (252)
T 3bkj_L          113 ISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRA--DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDG  190 (252)
T ss_dssp             ESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCC--CBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             ECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCC--CcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECC
Confidence            999999999999999999866432 2345666432  1245443321 1123468899999999985 443 79999999


Q ss_pred             EEcCCCC------------e----eEEEECCCCceeeEEEEEEEEeCCeeE
Q psy16863        885 RELKAGD------------I----HKIISGEDGTCCLGIYTCEAHNCMGTT  919 (1075)
Q Consensus       885 ~~l~~~~------------~----~~i~~~~~~~~d~G~Y~C~a~N~~G~~  919 (1075)
                      .++..+.            .    ..|.+......|+|.|+|.|.|.....
T Consensus       191 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  241 (252)
T 3bkj_L          191 SERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  241 (252)
T ss_dssp             EEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             eecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence            9886540            1    123333344467899999999987653

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.71  E-value=3.1e-16  Score=165.09  Aligned_cols=184  Identities=13%  Similarity=0.143  Sum_probs=129.2

Q ss_pred             cccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCC--c-----------------cccCCCeEEEee--CCe
Q psy16863        249 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD--H-----------------PIFGNRFRAINR--DGR  307 (1075)
Q Consensus       249 ~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~--~-----------------~~~~~~~~~~~~--~~~  307 (1075)
                      +....+.+|+.++|.|.+.+.+.        +...+.|++.+.  .                 .....++.+..+  ++.
T Consensus         9 p~~~~v~~G~~v~L~C~~~g~p~--------~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   80 (247)
T 2ghw_B            9 SGGGVVQPGKSLRLSCAASGFAF--------SSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNT   80 (247)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCG--------GGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTE
T ss_pred             cCCEEEecCCcEEEEEEeccccC--------CCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCE
Confidence            34577899999999998875320        023345544211  0                 012357776653  456


Q ss_pred             EEEEEcccCCCCCEEEEEEEEeCCee--EEEEEEEEEecCC-----------CCCCeeeeecCceeeccCCeEEEEEEEe
Q psy16863        308 TELNIRRVRRDDGGRYSVTASNESGY--STAKFELSVESQV-----------PDAPAFIRRLHDIAVKVGTRARLLVEIR  374 (1075)
Q Consensus       308 ~~L~I~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l~V~~~~-----------~~~p~~~~~~~~~~v~~G~~v~l~C~~~  374 (1075)
                      .+|+|.+++.+|+|.|+|.|.|..+.  ....+.|.|....           ..++.+...+....+.+|++++|.|.+.
T Consensus        81 ~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~  160 (247)
T 2ghw_B           81 LYLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRAS  160 (247)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEES
T ss_pred             EEEEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeC
Confidence            79999999999999999999997332  2334577776421           2355566667778899999999999999


Q ss_pred             cCCCcEEEEEE--CCEec------------CCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCce-eeEEEEEe
Q psy16863        375 SPTEIKIHWYR--NDRKL------------EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS-HCSCELSV  439 (1075)
Q Consensus       375 g~p~~~v~W~k--~g~~l------------~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~-~~s~~l~V  439 (1075)
                      +.|.+.+.|||  +|..+            ....++.+...+....|.|.+++.+|+|.|+|.|.|..+.. .....|.|
T Consensus       161 ~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V  240 (247)
T 2ghw_B          161 QSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEV  240 (247)
T ss_dssp             SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred             CCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEE
Confidence            98888999999  56543            12356666666677889999999999999999999864332 22345555


Q ss_pred             e
Q psy16863        440 L  440 (1075)
Q Consensus       440 ~  440 (1075)
                      .
T Consensus       241 ~  241 (247)
T 2ghw_B          241 K  241 (247)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.70  E-value=5.6e-17  Score=167.85  Aligned_cols=174  Identities=14%  Similarity=0.213  Sum_probs=115.0

Q ss_pred             ceeeeecCCeEEEEEEEecCC--CCeEEEEECC--EE---e---e-----------cCCcEEEEEe-eCcEEEEEEcccc
Q psy16863        756 KSCQATVNEEFKFTVQVSISP--EPKVSWFRDD--QQ---V---V-----------ESDNVKILKE-TLGVCHLKIHALE  813 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g~p--~p~v~W~k~g--~~---i---~-----------~~~~~~~~~~-~~~~~~L~I~~~~  813 (1075)
                      ....+.+|++++|.|.+.+.|  .+.+.|||++  ..   +   .           ...|+.+..+ ..+...|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (227)
T 1mju_H            8 GAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLT   87 (227)
T ss_dssp             SEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCCC
Confidence            345688999999999999887  6899999963  22   1   1           1356666543 2356799999999


Q ss_pred             CCCCeEEEEEEEeCCceEE-EEEEEEEEecCCCCCCeee-eecceeecCCCeEEEEEEEEcc-CCC-eeEEEECCEEcCC
Q psy16863        814 VADQAEWKCIATNDFGQSI-TSCFLKLNVPKHYKKPKFL-EELKAVLSEGGAVNLECKVIGV-PQP-TLKWFKDGRELKA  889 (1075)
Q Consensus       814 ~~D~G~Y~C~A~N~~G~~~-~s~~l~V~~~~~~~~p~~~-~~~~~~~~~g~~~~L~C~v~g~-p~p-~v~W~k~g~~l~~  889 (1075)
                      .+|+|.|.|.|.|..+... ....|.|...+ ..+|.+. ......+.+|+.++|.|.+.|. |.| .|+|+|||..+..
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~-~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~  166 (227)
T 1mju_H           88 SDDSAVYYCANKLGWFPYWGQGTLVTVSAAK-TTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGV  166 (227)
T ss_dssp             GGGCEEEEEEEEETTEEEECCCEEEEECSSC-CBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCTTE
T ss_pred             cccCEEEEEEECCCCceEEcCcEEEEEcCCC-CCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCc
Confidence            9999999999999743211 23467776422 1234432 2222235679999999999986 777 9999999986521


Q ss_pred             --------CCe----eEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEecCC
Q psy16863        890 --------GDI----HKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFEDK  931 (1075)
Q Consensus       890 --------~~~----~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~  931 (1075)
                              +..    ..|.+......| |.|+|.|.|..+.......+.+.++|
T Consensus       167 ~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~p  219 (227)
T 1mju_H          167 HTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPT  219 (227)
T ss_dssp             EECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCCC-
T ss_pred             EECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCCCC
Confidence                    011    134454444456 99999999998887666666655443

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.70  E-value=2e-16  Score=167.43  Aligned_cols=185  Identities=15%  Similarity=0.171  Sum_probs=126.8

Q ss_pred             cccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCC--Ccc----------------ccCCCeEEEee--CCeE
Q psy16863        249 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG--DHP----------------IFGNRFRAINR--DGRT  308 (1075)
Q Consensus       249 ~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~--~~~----------------~~~~~~~~~~~--~~~~  308 (1075)
                      +....+.+|+.++|.|.+.+.+        .+...+.|++++  ..+                ....++.+..+  ++..
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~p--------~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   78 (257)
T 1f3r_B            7 SGPGLVRPSETLSLTCTVSGFS--------LTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQV   78 (257)
T ss_dssp             ECCSEECTTSEEEEEEEEESSC--------TTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEE
T ss_pred             CCCccccCCceEEEEEEEeccc--------CCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEE
Confidence            4456789999999999987431        012334444431  100                01457777654  5667


Q ss_pred             EEEEcccCCCCCEEEEEEEEeCCe-------e--EEEEEEEEEecCCC-----------CCCeeeeecCceeeccCCeEE
Q psy16863        309 ELNIRRVRRDDGGRYSVTASNESG-------Y--STAKFELSVESQVP-----------DAPAFIRRLHDIAVKVGTRAR  368 (1075)
Q Consensus       309 ~L~I~~~~~~d~G~Y~C~a~n~~g-------~--~~~~~~l~V~~~~~-----------~~p~~~~~~~~~~v~~G~~v~  368 (1075)
                      +|+|.+++.+|+|.|.|.|.|..|       .  ....+.|.|.....           .++.+...+..+.+.+|++++
T Consensus        79 ~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~  158 (257)
T 1f3r_B           79 FLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVT  158 (257)
T ss_dssp             EEEEESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEE
T ss_pred             EEEECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEE
Confidence            999999999999999999999854       1  12345677764210           123445556677899999999


Q ss_pred             EEEEEecCCCcEEEEEE--CCEecC------------CCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeE
Q psy16863        369 LLVEIRSPTEIKIHWYR--NDRKLE------------ENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCS  434 (1075)
Q Consensus       369 l~C~~~g~p~~~v~W~k--~g~~l~------------~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s  434 (1075)
                      |.|.+.+.+.+.+.|||  +|..+.            ...++.+..++....|.|.++..+|+|.|+|.|.|........
T Consensus       159 L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~g  238 (257)
T 1f3r_B          159 LSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAG  238 (257)
T ss_dssp             EEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEEECCC
T ss_pred             EEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCCCeECCC
Confidence            99999888888999999  665431            1356666656677789999999999999999999974111223


Q ss_pred             EEEEeec
Q psy16863        435 CELSVLV  441 (1075)
Q Consensus       435 ~~l~V~~  441 (1075)
                      ..|.|..
T Consensus       239 t~l~V~~  245 (257)
T 1f3r_B          239 TKLELKA  245 (257)
T ss_dssp             CEECCSS
T ss_pred             EEEEEeC
Confidence            4455543

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.70  E-value=2.4e-16  Score=165.14  Aligned_cols=164  Identities=13%  Similarity=0.223  Sum_probs=122.3

Q ss_pred             eeeeecCceeeccCCeEEEEEEEecCC----CcEEEEEECC--Eec------------CCCCcEEEEEcCCEEEEEEccc
Q psy16863        351 AFIRRLHDIAVKVGTRARLLVEIRSPT----EIKIHWYRND--RKL------------EENKIYRTQHDGNFYFIDLSSV  412 (1075)
Q Consensus       351 ~~~~~~~~~~v~~G~~v~l~C~~~g~p----~~~v~W~k~g--~~l------------~~~~~~~~~~~g~~~~L~I~~v  412 (1075)
                      .+...+..+.+.+|++++|.|.+.+.|    .+.|.|||++  ..+            ....++.+...+....|.|.++
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   82 (240)
T 1moe_A            3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPV   82 (240)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             ceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCC
Confidence            355566778999999999999998887    7899999963  211            1135677776777788999999


Q ss_pred             CCCCceeEEEEEEeCCCc-eeeEEEEEeecCCCCC-CC-eeeeecceEEecCCeEEEEEEEECCCC--CeEEEEeC--CE
Q psy16863        413 SLFDSGRWTCLAENAVGR-SHCSCELSVLVPKAYK-AP-FFTKELEAILTEQGTVSLECKVMGIPT--PQLIWYKD--NK  485 (1075)
Q Consensus       413 ~~~d~G~Y~C~a~n~~g~-~~~s~~l~V~~~~~~~-~p-~~~~~~~~~~~~g~~v~l~C~~~g~p~--~~v~W~~~--g~  485 (1075)
                      +.+|+|.|+|.|.|..+. ....+.|.|..++... ++ .+..+....+.+|++++|.|.+.|.|.  +.+.|+|+  +.
T Consensus        83 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~  162 (240)
T 1moe_A           83 EADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQ  162 (240)
T ss_dssp             CGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTS
T ss_pred             ChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCC
Confidence            999999999999998664 3345678887654311 12 223333345889999999999999874  59999995  22


Q ss_pred             ecc----------------------------CCCEEEEEeCCCCCCCcEEEEEEEEe
Q psy16863        486 KIK----------------------------AGDIFALTANPKDPSSLGTYTCEAVN  514 (1075)
Q Consensus       486 ~l~----------------------------~~~~~~l~i~~~~~~d~G~Y~C~a~n  514 (1075)
                      .+.                            ......|.|.++..+|+|.|+|.|.+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          163 GLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             CCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             CcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence            210                            12235799999999999999999985

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.70  E-value=1.6e-16  Score=167.15  Aligned_cols=164  Identities=13%  Similarity=0.206  Sum_probs=115.1

Q ss_pred             EEeccceeeeecCCeEEEEEEEecCC-----CCeEEEEECC--EE---ee---------cCCcEEEEEeeCcEEEEEEcc
Q psy16863        751 FIEGLKSCQATVNEEFKFTVQVSISP-----EPKVSWFRDD--QQ---VV---------ESDNVKILKETLGVCHLKIHA  811 (1075)
Q Consensus       751 ~~~~~~~~~~~~g~~~~l~C~v~g~p-----~p~v~W~k~g--~~---i~---------~~~~~~~~~~~~~~~~L~I~~  811 (1075)
                      +...+..+.+.+|++++|.|.+.+.|     .+.+.|+|++  ..   +.         ...++.+.. ..+...|.|.+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~   82 (247)
T 1svz_A            4 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG-SGTDFTLKISR   82 (247)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESS
T ss_pred             EEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEecc-CCCEEEEEECC
Confidence            44455667899999999999999988     6899999942  21   11         135666653 44577999999


Q ss_pred             ccCCCCeEEEEEEEeCCceEE-EEEEEEEEecCCC---------CCCeeeeecceeecCCCeEEEEEEEEccC--CCeeE
Q psy16863        812 LEVADQAEWKCIATNDFGQSI-TSCFLKLNVPKHY---------KKPKFLEELKAVLSEGGAVNLECKVIGVP--QPTLK  879 (1075)
Q Consensus       812 ~~~~D~G~Y~C~A~N~~G~~~-~s~~l~V~~~~~~---------~~p~~~~~~~~~~~~g~~~~L~C~v~g~p--~p~v~  879 (1075)
                      ++.+|+|.|.|.|.|..+... ..+.|.|..++..         .++.+.......+.+|++++|.|.+.+.|  .+.+.
T Consensus        83 v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~  162 (247)
T 1svz_A           83 VEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMH  162 (247)
T ss_dssp             CCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEE
T ss_pred             CCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEE
Confidence            999999999999999866422 2456777654310         11223333344578999999999999985  56899


Q ss_pred             EEECC--EEc------C------------C----------CCeeEEEECCCCceeeEEEEEEEEeC
Q psy16863        880 WFKDG--REL------K------------A----------GDIHKIISGEDGTCCLGIYTCEAHNC  915 (1075)
Q Consensus       880 W~k~g--~~l------~------------~----------~~~~~i~~~~~~~~d~G~Y~C~a~N~  915 (1075)
                      |||++  ..+      .            .          +....|.+......|+|.|.|.|.|.
T Consensus       163 W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          163 WVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             EEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             EEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            99963  211      0            0          11246777788889999999999995

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.70  E-value=1.1e-16  Score=168.82  Aligned_cols=165  Identities=14%  Similarity=0.226  Sum_probs=116.8

Q ss_pred             CeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECC-----EEe---------ecCCcEEEEEeeCcEEEEEEccccC
Q psy16863        749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDD-----QQV---------VESDNVKILKETLGVCHLKIHALEV  814 (1075)
Q Consensus       749 p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g-----~~i---------~~~~~~~~~~~~~~~~~L~I~~~~~  814 (1075)
                      +.+...+....+.+|++++|.|.+.+.|.+.+.|+|++     ..+         ....++.+.. ..+.+.|.|.+++.
T Consensus         5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~   83 (250)
T 3esu_F            5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSG-SGTDYSLTISNLEQ   83 (250)
T ss_dssp             CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCG
T ss_pred             eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeC-CCCEEEEEEccCCh
Confidence            44555666778999999999999999999999999953     111         1134665543 44577999999999


Q ss_pred             CCCeEEEEEEEeCCceEE-EEEEEEEEecCC---------------CCCCeeeeecceeecCCCeEEEEEEEEccC--CC
Q psy16863        815 ADQAEWKCIATNDFGQSI-TSCFLKLNVPKH---------------YKKPKFLEELKAVLSEGGAVNLECKVIGVP--QP  876 (1075)
Q Consensus       815 ~D~G~Y~C~A~N~~G~~~-~s~~l~V~~~~~---------------~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p--~p  876 (1075)
                      +|+|.|.|.|.|..+... ....|.|..++.               ..++....+....+.+|++++|.|.+.|.|  .+
T Consensus        84 ~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~  163 (250)
T 3esu_F           84 EDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSS  163 (250)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGS
T ss_pred             hhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCC
Confidence            999999999999866532 234566654310               111222233334478999999999999877  78


Q ss_pred             eeEEEEC--CEEcC----------------------------CCCeeEEEECCCCceeeEEEEEEEEe
Q psy16863        877 TLKWFKD--GRELK----------------------------AGDIHKIISGEDGTCCLGIYTCEAHN  914 (1075)
Q Consensus       877 ~v~W~k~--g~~l~----------------------------~~~~~~i~~~~~~~~d~G~Y~C~a~N  914 (1075)
                      .+.|||+  |..+.                            .+....|.+......|+|.|.|.|.|
T Consensus       164 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          164 WMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             EEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            9999997  54331                            02233577888888999999999998

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.70  E-value=2.7e-16  Score=164.64  Aligned_cols=165  Identities=15%  Similarity=0.238  Sum_probs=120.5

Q ss_pred             eeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECC--Ee---c---------CCCCcEEEEEcCCEEEEEEcccCCCC
Q psy16863        351 AFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRND--RK---L---------EENKIYRTQHDGNFYFIDLSSVSLFD  416 (1075)
Q Consensus       351 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g--~~---l---------~~~~~~~~~~~g~~~~L~I~~v~~~d  416 (1075)
                      .+...+..+.+.+|++++|.|.+.+.|.+.|.|||++  ..   +         ....++.+...+....|.|.+++.+|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (242)
T 2znx_A            3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED   82 (242)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             cEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHH
Confidence            3555677789999999999999998888999999953  11   1         11356776666777789999999999


Q ss_pred             ceeEEEEEEeCCCce-eeEEEEEeecCCC---------CCCCeeeeecceEEecCCeEEEEEEEECCC--CCeEEEEeC-
Q psy16863        417 SGRWTCLAENAVGRS-HCSCELSVLVPKA---------YKAPFFTKELEAILTEQGTVSLECKVMGIP--TPQLIWYKD-  483 (1075)
Q Consensus       417 ~G~Y~C~a~n~~g~~-~~s~~l~V~~~~~---------~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p--~~~v~W~~~-  483 (1075)
                      +|.|.|.|.|..+.. .....|.|..++.         ..++.+..+....+.+|++++|.|.+.+.|  .+.+.|+|+ 
T Consensus        83 ~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~  162 (242)
T 2znx_A           83 FGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKF  162 (242)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             CEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeC
Confidence            999999999975432 2345677776542         111233343445688999999999999876  478999994 


Q ss_pred             -CEecc---------------------------CCCEEEEEeCCCCCCCcEEEEEEEEec
Q psy16863        484 -NKKIK---------------------------AGDIFALTANPKDPSSLGTYTCEAVNC  515 (1075)
Q Consensus       484 -g~~l~---------------------------~~~~~~l~i~~~~~~d~G~Y~C~a~n~  515 (1075)
                       +..+.                           .+....|.|.++..+|+|.|+|.|.|.
T Consensus       163 ~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          163 PGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             TTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             CCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence             22220                           123457999999999999999999983

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.70  E-value=1.4e-16  Score=168.55  Aligned_cols=172  Identities=14%  Similarity=0.194  Sum_probs=122.6

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecC--CCCeEEEEECC--EE---ee--------------cCCcEEEEEee-CcE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSIS--PEPKVSWFRDD--QQ---VV--------------ESDNVKILKET-LGV  804 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~--p~p~v~W~k~g--~~---i~--------------~~~~~~~~~~~-~~~  804 (1075)
                      .+|.|...+..+.+.+|++++|.|.+.+.  |.+.+.|||..  ..   +.              ...++.+..+. .+.
T Consensus         5 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   84 (256)
T 3juy_B            5 HHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT   84 (256)
T ss_dssp             --CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE
T ss_pred             cceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCE
Confidence            46778888889999999999999999984  67899999842  11   10              12466665432 456


Q ss_pred             EEEEEccccCCCCeEEEEEEEeC------------CceEEEEEEEEEEecCCCC----------CCeeeeecce-eecCC
Q psy16863        805 CHLKIHALEVADQAEWKCIATND------------FGQSITSCFLKLNVPKHYK----------KPKFLEELKA-VLSEG  861 (1075)
Q Consensus       805 ~~L~I~~~~~~D~G~Y~C~A~N~------------~G~~~~s~~l~V~~~~~~~----------~p~~~~~~~~-~~~~g  861 (1075)
                      +.|+|.+++.+|+|.|.|.|.|.            .+.......|.|..++...          +|.+...+.. .+.+|
T Consensus        85 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G  164 (256)
T 3juy_B           85 AYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPG  164 (256)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTT
T ss_pred             EEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCC
Confidence            78999999999999999999997            3333335567776543211          3444444443 47899


Q ss_pred             CeEEEEEEEEccCC-CeeEEEEC--CEEcC---------------------CCCeeEEEECCCCceeeEEEEEEEEeCCe
Q psy16863        862 GAVNLECKVIGVPQ-PTLKWFKD--GRELK---------------------AGDIHKIISGEDGTCCLGIYTCEAHNCMG  917 (1075)
Q Consensus       862 ~~~~L~C~v~g~p~-p~v~W~k~--g~~l~---------------------~~~~~~i~~~~~~~~d~G~Y~C~a~N~~G  917 (1075)
                      ++++|.|.+.+.|. +.+.|||.  |..+.                     .+....|.+......|+|.|.|.|.|..+
T Consensus       165 ~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~  244 (256)
T 3juy_B          165 ERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASS  244 (256)
T ss_dssp             SCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred             CCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence            99999999999887 89999982  32211                     12234578888888999999999999654


Q ss_pred             e
Q psy16863        918 T  918 (1075)
Q Consensus       918 ~  918 (1075)
                      .
T Consensus       245 ~  245 (256)
T 3juy_B          245 Y  245 (256)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.70  E-value=2.5e-16  Score=166.06  Aligned_cols=165  Identities=13%  Similarity=0.249  Sum_probs=120.9

Q ss_pred             CeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECC-----Ee---------cCCCCcEEEEEcCCEEEEEEcccCCC
Q psy16863        350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRND-----RK---------LEENKIYRTQHDGNFYFIDLSSVSLF  415 (1075)
Q Consensus       350 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g-----~~---------l~~~~~~~~~~~g~~~~L~I~~v~~~  415 (1075)
                      +.+...+..+.+.+|++++|.|.+.+.|.+.+.|||++     ..         .....++.....+....|.|.+++.+
T Consensus         5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   84 (250)
T 3esu_F            5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQE   84 (250)
T ss_dssp             CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChh
Confidence            44555667788999999999999999998999999953     11         11235677777777788999999999


Q ss_pred             CceeEEEEEEeCCCce-eeEEEEEeecCCC---------------CCCCeeeeecceEEecCCeEEEEEEEECCC--CCe
Q psy16863        416 DSGRWTCLAENAVGRS-HCSCELSVLVPKA---------------YKAPFFTKELEAILTEQGTVSLECKVMGIP--TPQ  477 (1075)
Q Consensus       416 d~G~Y~C~a~n~~g~~-~~s~~l~V~~~~~---------------~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p--~~~  477 (1075)
                      |+|.|.|.|.|..+.. .....|.|..++.               ..++.+..+....+.+|++++|.|.+.+.|  .+.
T Consensus        85 D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~  164 (250)
T 3esu_F           85 DIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSW  164 (250)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSE
T ss_pred             hCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCE
Confidence            9999999999876543 2345677765320               112233334444588999999999999877  779


Q ss_pred             EEEEeC--CEecc----------------------------CCCEEEEEeCCCCCCCcEEEEEEEEe
Q psy16863        478 LIWYKD--NKKIK----------------------------AGDIFALTANPKDPSSLGTYTCEAVN  514 (1075)
Q Consensus       478 v~W~~~--g~~l~----------------------------~~~~~~l~i~~~~~~d~G~Y~C~a~n  514 (1075)
                      +.|+|+  +..+.                            ......|.|.++..+|+|.|+|.|.|
T Consensus       165 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          165 MNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             EEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            999997  43321                            12344799999999999999999997

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.70  E-value=7.2e-18  Score=172.94  Aligned_cols=162  Identities=15%  Similarity=0.238  Sum_probs=118.0

Q ss_pred             cCceeeccCCeEEEEEEEecCCCcEEEEEEC--CEecC------------CCCcEEEEEcCCEEEEEEcccCCCCceeEE
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DRKLE------------ENKIYRTQHDGNFYFIDLSSVSLFDSGRWT  421 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~l~------------~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~  421 (1075)
                      +..+.+.+|++++|.|.+.+.|.+.|.|||+  |..+.            ...++.+...+....|.|.+++.+|+|.|+
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   85 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence            5677899999999999998877778999995  33221            135677776777788999999999999999


Q ss_pred             EEEEeCCC-ce--eeEEEEEeecCCCCCCCeeee-ecceEEecCCeEEEEEEEECC-CC-CeEEEEeCCEeccCCCE---
Q psy16863        422 CLAENAVG-RS--HCSCELSVLVPKAYKAPFFTK-ELEAILTEQGTVSLECKVMGI-PT-PQLIWYKDNKKIKAGDI---  492 (1075)
Q Consensus       422 C~a~n~~g-~~--~~s~~l~V~~~~~~~~p~~~~-~~~~~~~~g~~v~l~C~~~g~-p~-~~v~W~~~g~~l~~~~~---  492 (1075)
                      |.|.|..+ ..  .....|.|...+. .+|.+.. .....+.+|+.+.|.|.+.|. |+ +.|+|+|+|+++..+..   
T Consensus        86 C~~~n~~~~~~~~~~~~~l~V~~~~~-~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~  164 (212)
T 1nfd_E           86 CLSSYGDNNDLVFGSGTQLTVLRGPK-SSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTK  164 (212)
T ss_dssp             EEEEETTTTEEEECCCEEEEEECCCC-BCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCC
T ss_pred             EEEEcccCcccccCCceEEEEccCCC-CCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCC
Confidence            99997322 21  2234566654332 2344433 222224578999999999987 55 79999999999864321   


Q ss_pred             -------E----EEEeCCCCCCCcEEEEEEEEeccee
Q psy16863        493 -------F----ALTANPKDPSSLGTYTCEAVNCMGA  518 (1075)
Q Consensus       493 -------~----~l~i~~~~~~d~G~Y~C~a~n~~g~  518 (1075)
                             +    .|.|..+..+|+|.|+|.|.|..+.
T Consensus       165 ~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          165 PSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET  201 (212)
T ss_dssp             CBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             ceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence                   2    3667777788999999999998654

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.70  E-value=3.2e-17  Score=168.44  Aligned_cols=171  Identities=17%  Similarity=0.179  Sum_probs=106.8

Q ss_pred             CCCeEEeccceee--eecCCeEEEEEEEecC---CC-CeEEEEECCEEeecCCcEEEEEeeC----cEEEEEEccccCCC
Q psy16863        747 KAPKFIEGLKSCQ--ATVNEEFKFTVQVSIS---PE-PKVSWFRDDQQVVESDNVKILKETL----GVCHLKIHALEVAD  816 (1075)
Q Consensus       747 ~~p~~~~~~~~~~--~~~g~~~~l~C~v~g~---p~-p~v~W~k~g~~i~~~~~~~~~~~~~----~~~~L~I~~~~~~D  816 (1075)
                      .+|.+...+....  +.+|++++|.|.+.|.   |. +.|+|+|+|..+.............    ....|.|.+++.+|
T Consensus         8 ~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   87 (218)
T 2rgs_A            8 GGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMS   87 (218)
T ss_dssp             -CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHT
T ss_pred             CCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCC
Confidence            3555544333333  7899999999999987   43 7999999998875432111111111    13479999999999


Q ss_pred             CeEEEEEEEeCCceEEEEEEEEEEecCCCCCCeeeeec-ceeecCCCeEEEEEEEEc-cCCC-eeEEEECCEEcCCCCee
Q psy16863        817 QAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEEL-KAVLSEGGAVNLECKVIG-VPQP-TLKWFKDGRELKAGDIH  893 (1075)
Q Consensus       817 ~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~-~~~~~~g~~~~L~C~v~g-~p~p-~v~W~k~g~~l~~~~~~  893 (1075)
                      +|.|+|.|.|..+.......+.. ......+|.+.... .....+|+.++|.|.+.| .|.+ .|+|+|||.++......
T Consensus        88 ~g~Y~C~~~~~~~~~~~~~~v~~-~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~  166 (218)
T 2rgs_A           88 GKEFKCKVNNKDLPSPIERTISK-IKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDT  166 (218)
T ss_dssp             TCCEEEEEEETTCSSCEEEEECC-CCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEEC
T ss_pred             CCeEEEEEECCcCCCcceEEEee-cCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceec
Confidence            99999999999875411222211 01112344443221 112235899999999999 5665 89999999987532111


Q ss_pred             EEEECCCC--------------ceeeEEEEEEEEeCCee
Q psy16863        894 KIISGEDG--------------TCCLGIYTCEAHNCMGT  918 (1075)
Q Consensus       894 ~i~~~~~~--------------~~d~G~Y~C~a~N~~G~  918 (1075)
                      ......++              ..|.|.|+|.|.|....
T Consensus       167 ~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~  205 (218)
T 2rgs_A          167 APVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK  205 (218)
T ss_dssp             CCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred             ccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence            11111111              12479999999997653

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.70  E-value=3.5e-16  Score=165.09  Aligned_cols=182  Identities=14%  Similarity=0.164  Sum_probs=128.7

Q ss_pred             ccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCC--Ccc-----------------ccCCCeEEEee--CC
Q psy16863        248 RLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG--DHP-----------------IFGNRFRAINR--DG  306 (1075)
Q Consensus       248 ~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~--~~~-----------------~~~~~~~~~~~--~~  306 (1075)
                      .+..+.+.+|+.++|.|.+.+.+.        +...+.|++.+  ..+                 ....++.+..+  ++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~g~~~--------~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   77 (256)
T 1nqb_A            6 QSGAELVKPGASVKLSCKASGYTF--------TSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSS   77 (256)
T ss_dssp             ECCCEEECTTCCEEEEEEECSSCG--------GGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTT
T ss_pred             CCCCeeecCCCcEEEEEEeccccC--------CCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCC
Confidence            345677899999999999865320        12234444321  100                 01357776654  45


Q ss_pred             eEEEEEcccCCCCCEEEEEEEEeCCee-----EEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecCCCc--
Q psy16863        307 RTELNIRRVRRDDGGRYSVTASNESGY-----STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEI--  379 (1075)
Q Consensus       307 ~~~L~I~~~~~~d~G~Y~C~a~n~~g~-----~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~--  379 (1075)
                      ..+|+|.+++.+|+|.|.|.|.|..|.     ....+.|.|..    +|.+...+....+.+|++++|.|.+.+.|.+  
T Consensus        78 ~~~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~----~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~  153 (256)
T 1nqb_A           78 TAYMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSS----DIELTQTPLSLPVSLGDQASISCRSSQSIVHSN  153 (256)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECC----CCCEEEECSEEEECTTCCEEEEEEESSCCBCTT
T ss_pred             EEEEEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecc----cccEEecCcEEEEecCCcEEEEeEecCcccccc
Confidence            679999999999999999999998652     23345677763    5667777778889999999999999887754  


Q ss_pred             ---EEEEEE--CCEecC------------CCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCce-eeEEEEEeec
Q psy16863        380 ---KIHWYR--NDRKLE------------ENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS-HCSCELSVLV  441 (1075)
Q Consensus       380 ---~v~W~k--~g~~l~------------~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~-~~s~~l~V~~  441 (1075)
                         .|.|||  +|..+.            ...++.....+....|.|.+++.+|+|.|+|.|.|..... .....|.|..
T Consensus       154 ~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~  233 (256)
T 1nqb_A          154 GNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKR  233 (256)
T ss_dssp             SCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             cceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEEC
Confidence               999999  665431            1356666666777789999999999999999999854322 2234566643

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.70  E-value=4e-16  Score=160.97  Aligned_cols=167  Identities=11%  Similarity=0.211  Sum_probs=115.7

Q ss_pred             ceeeeecCCeEEEEEEEecCC--CCeEEEEECC--E---Eee--------------cCCcEEEEEee-CcEEEEEEcccc
Q psy16863        756 KSCQATVNEEFKFTVQVSISP--EPKVSWFRDD--Q---QVV--------------ESDNVKILKET-LGVCHLKIHALE  813 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g~p--~p~v~W~k~g--~---~i~--------------~~~~~~~~~~~-~~~~~L~I~~~~  813 (1075)
                      ....+.+|++++|.|.+.+.|  .+.+.|||.+  .   .+.              ...|+.+..+. .+.+.|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (223)
T 1dee_B            8 GGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLR   87 (223)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCC
Confidence            356788999999999999876  4789999853  2   121              12467665442 346799999999


Q ss_pred             CCCCeEEEEEEEeCCc----e--EEEEEEEEEEecCCCCCCeee-eecceeecCCCeEEEEEEEEcc-CCC-eeEEEE-C
Q psy16863        814 VADQAEWKCIATNDFG----Q--SITSCFLKLNVPKHYKKPKFL-EELKAVLSEGGAVNLECKVIGV-PQP-TLKWFK-D  883 (1075)
Q Consensus       814 ~~D~G~Y~C~A~N~~G----~--~~~s~~l~V~~~~~~~~p~~~-~~~~~~~~~g~~~~L~C~v~g~-p~p-~v~W~k-~  883 (1075)
                      .+|+|.|.|.+.|..|    .  ......|.|...+ ..+|.+. ......+.+|+.++|.|.+.|. |.| .|+|+| |
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~-~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~  166 (223)
T 1dee_B           88 AEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGS-ASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKN  166 (223)
T ss_dssp             GGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSC-CBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             HHHCEEEEEEEeccccCcccceeecCcEEEEEccCC-CCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccC
Confidence            9999999999999754    1  1123467776321 1344433 2222235689999999999987 777 999999 9


Q ss_pred             CEEcCC---------CCee----EEEECCCCc--eeeEEEEEEEEeCCeeEEEEE
Q psy16863        884 GRELKA---------GDIH----KIISGEDGT--CCLGIYTCEAHNCMGTTSSSA  923 (1075)
Q Consensus       884 g~~l~~---------~~~~----~i~~~~~~~--~d~G~Y~C~a~N~~G~~~~~~  923 (1075)
                      |.+|..         +..+    .|.+.....  .|.|.|+|.|.|..|......
T Consensus       167 g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~  221 (223)
T 1dee_B          167 NSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV  221 (223)
T ss_dssp             SCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred             CCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence            988753         1222    233333332  568999999999999876543

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.70  E-value=2.9e-17  Score=167.29  Aligned_cols=167  Identities=20%  Similarity=0.200  Sum_probs=104.9

Q ss_pred             eEEeccceee-eecCCeEEEEEEEecCC----CCeEEEEECCEEeecCCc-EEEEEee---CcEEEEEEccccCCCCeEE
Q psy16863        750 KFIEGLKSCQ-ATVNEEFKFTVQVSISP----EPKVSWFRDDQQVVESDN-VKILKET---LGVCHLKIHALEVADQAEW  820 (1075)
Q Consensus       750 ~~~~~~~~~~-~~~g~~~~l~C~v~g~p----~p~v~W~k~g~~i~~~~~-~~~~~~~---~~~~~L~I~~~~~~D~G~Y  820 (1075)
                      .++.++.... +.+|+++.|.|.+.|.|    .+.|+|+|++..+..... +......   .....|.|.+++.+|+|.|
T Consensus         4 v~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y   83 (207)
T 2vol_A            4 VFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEF   83 (207)
T ss_dssp             EEEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCE
T ss_pred             EEEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEE
Confidence            3444444444 78999999999999884    349999999987653210 0000000   0134799999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEEecCCCCCCeeeeecc-eeecCCCeEEEEEEEEcc-CC-CeeEEEECCEEcCCCCeeEEEE
Q psy16863        821 KCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK-AVLSEGGAVNLECKVIGV-PQ-PTLKWFKDGRELKAGDIHKIIS  897 (1075)
Q Consensus       821 ~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~-~~~~~g~~~~L~C~v~g~-p~-p~v~W~k~g~~l~~~~~~~i~~  897 (1075)
                      +|.|.|..|.......+.+. .....+|.+..... ....+|+.++|.|.+.|. |+ +.|+|+|||.++..........
T Consensus        84 ~C~a~~~~~~~~~~~~v~~~-~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~  162 (207)
T 2vol_A           84 KCRVNSAAFPAPIEKTISKT-KGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIM  162 (207)
T ss_dssp             EEEEECTTCSSCEEEEECCC-CCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEE
T ss_pred             EEEEEccCCCCceEEEeccC-CCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceE
Confidence            99999998864222233220 01123444432211 112358999999999985 44 3899999999885422111111


Q ss_pred             CCCC--------------ceeeEEEEEEEEeCCe
Q psy16863        898 GEDG--------------TCCLGIYTCEAHNCMG  917 (1075)
Q Consensus       898 ~~~~--------------~~d~G~Y~C~a~N~~G  917 (1075)
                      ..++              ..|.|.|+|.|.|...
T Consensus       163 ~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l  196 (207)
T 2vol_A          163 DTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  196 (207)
T ss_dssp             CTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred             CCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCC
Confidence            1221              1357999999999764

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.70  E-value=7.5e-17  Score=143.17  Aligned_cols=96  Identities=23%  Similarity=0.355  Sum_probs=89.5

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      .||.|+..+.++.+.+|+++.|.|.+.|.|.+.|+|+|||..|..+.++.+..++..+.|.|.+++.+|+|.|+|.|.|.
T Consensus        12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   91 (107)
T 3knb_B           12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNA   91 (107)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEEC
Confidence            47899999999999999999999999999999999999999999999999988999999999999999999999999999


Q ss_pred             CCceeeEEEEEeecCC
Q psy16863        428 VGRSHCSCELSVLVPK  443 (1075)
Q Consensus       428 ~g~~~~s~~l~V~~~~  443 (1075)
                      .|....++.|.|..+|
T Consensus        92 ~G~~~~~~~l~V~~pP  107 (107)
T 3knb_B           92 AGEAYAAAAVTVLEPP  107 (107)
T ss_dssp             TEEEEEEEEEEEEC--
T ss_pred             CCEEEEEEEEEEEcCC
Confidence            9999999999998654

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.70  E-value=1.4e-16  Score=164.40  Aligned_cols=167  Identities=14%  Similarity=0.212  Sum_probs=115.4

Q ss_pred             ceeeeecCCeEEEEEEEecCC--CCeEEEEECC--EE---ee---c-------------CCcEEEEEee-CcEEEEEEcc
Q psy16863        756 KSCQATVNEEFKFTVQVSISP--EPKVSWFRDD--QQ---VV---E-------------SDNVKILKET-LGVCHLKIHA  811 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g~p--~p~v~W~k~g--~~---i~---~-------------~~~~~~~~~~-~~~~~L~I~~  811 (1075)
                      ....+.+|+++.|.|.+.+.|  .+.+.|+|++  ..   +.   .             ..++.+..+. .+...|.|.+
T Consensus         8 ~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   87 (220)
T 1pz5_B            8 GGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNN   87 (220)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEcc
Confidence            445788999999999999877  7899999963  21   10   0             2567665432 3567899999


Q ss_pred             ccCCCCeEEEEEEEeCCceE-E--EEEEEEEEecCCCCCCeeee-ecceeecCCCeEEEEEEEEcc-CCC-eeEEEECCE
Q psy16863        812 LEVADQAEWKCIATNDFGQS-I--TSCFLKLNVPKHYKKPKFLE-ELKAVLSEGGAVNLECKVIGV-PQP-TLKWFKDGR  885 (1075)
Q Consensus       812 ~~~~D~G~Y~C~A~N~~G~~-~--~s~~l~V~~~~~~~~p~~~~-~~~~~~~~g~~~~L~C~v~g~-p~p-~v~W~k~g~  885 (1075)
                      ++.+|+|.|.|.|.|..|.. .  ..+.|.|...+ ..+|.+.. .....+.+|+.++|.|.+.|. |.| .|+|+|+|.
T Consensus        88 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~-~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~  166 (220)
T 1pz5_B           88 LRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSAT-TTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGAL  166 (220)
T ss_dssp             CCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSC-CBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGTC
T ss_pred             CCHHHCEEEEEEEecCCcccceECCCEEEEEccCC-CCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecCCc
Confidence            99999999999999986532 1  24566666422 23444432 212235689999999999998 888 999999986


Q ss_pred             E-----cCC---CCee----EEEECCCCceeeEEEEEEEEeCCeeEEEEEE
Q psy16863        886 E-----LKA---GDIH----KIISGEDGTCCLGIYTCEAHNCMGTTSSSAA  924 (1075)
Q Consensus       886 ~-----l~~---~~~~----~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~  924 (1075)
                      .     +..   ...+    .|.+......| |.|+|.|.|.+|..+.++.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~  216 (220)
T 1pz5_B          167 SSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKE  216 (220)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             ccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeec
Confidence            3     110   1221    23444333334 9999999999998766543

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.70  E-value=4.9e-16  Score=166.25  Aligned_cols=167  Identities=13%  Similarity=0.255  Sum_probs=122.2

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCE-----ec---------CCCCcEEEEEcCCEEEEEEcccCC
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDR-----KL---------EENKIYRTQHDGNFYFIDLSSVSL  414 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~-----~l---------~~~~~~~~~~~g~~~~L~I~~v~~  414 (1075)
                      .+.+...+..+.+.+|++++|.|.+.+.|.+.|.|||++.     .+         ....++.+..++....|.|.+++.
T Consensus        12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   91 (276)
T 3auv_A           12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP   91 (276)
T ss_dssp             CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence            4556667788899999999999999998889999999642     12         123577777677778899999999


Q ss_pred             CCceeEEEEEEeCCCc-eeeEEEEEeecCCC---------CCCC-eeeeecceEEecCCeEEEEEEEECCC--CCeEEEE
Q psy16863        415 FDSGRWTCLAENAVGR-SHCSCELSVLVPKA---------YKAP-FFTKELEAILTEQGTVSLECKVMGIP--TPQLIWY  481 (1075)
Q Consensus       415 ~d~G~Y~C~a~n~~g~-~~~s~~l~V~~~~~---------~~~p-~~~~~~~~~~~~g~~v~l~C~~~g~p--~~~v~W~  481 (1075)
                      +|+|.|.|.|.|..+. ....+.|.|..++.         ..++ .+..+....+.+|++++|.|.+.|.|  .+.+.|+
T Consensus        92 ~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~  171 (276)
T 3auv_A           92 EDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWV  171 (276)
T ss_dssp             GGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEE
T ss_pred             hhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEE
Confidence            9999999999997654 22345677766532         1112 23333344588999999999999877  4799999


Q ss_pred             eCC--Eecc----------------------------CCCEEEEEeCCCCCCCcEEEEEEEEec
Q psy16863        482 KDN--KKIK----------------------------AGDIFALTANPKDPSSLGTYTCEAVNC  515 (1075)
Q Consensus       482 ~~g--~~l~----------------------------~~~~~~l~i~~~~~~d~G~Y~C~a~n~  515 (1075)
                      |++  ..+.                            ......|.|.++..+|+|.|+|.|.|.
T Consensus       172 k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  235 (276)
T 3auv_A          172 RQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVF  235 (276)
T ss_dssp             EECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence            963  2110                            012347999999999999999999997

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.69  E-value=3.8e-16  Score=165.38  Aligned_cols=171  Identities=14%  Similarity=0.166  Sum_probs=117.8

Q ss_pred             CeEEeccceeeeecCCeEEEEEEEecC--CCCeEEEEECC--E---Ee-------------ecCCcEEEEEee-CcEEEE
Q psy16863        749 PKFIEGLKSCQATVNEEFKFTVQVSIS--PEPKVSWFRDD--Q---QV-------------VESDNVKILKET-LGVCHL  807 (1075)
Q Consensus       749 p~~~~~~~~~~~~~g~~~~l~C~v~g~--p~p~v~W~k~g--~---~i-------------~~~~~~~~~~~~-~~~~~L  807 (1075)
                      +..+..+....+.+|++++|.|.+.+.  |.+.+.|||..  .   .+             ....++.+..+. .+.+.|
T Consensus         9 ~v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   88 (257)
T 3gkz_A            9 EVQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYL   88 (257)
T ss_dssp             CEEEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEE
T ss_pred             cEEEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEE
Confidence            334445566779999999999999984  47899999932  1   11             012466665432 457789


Q ss_pred             EEccccCCCCeEEEEEEEeCC----ceEEEEEEEEEEecCC---------CCCCeeeeecc-eeecCCCeEEEEEEEEcc
Q psy16863        808 KIHALEVADQAEWKCIATNDF----GQSITSCFLKLNVPKH---------YKKPKFLEELK-AVLSEGGAVNLECKVIGV  873 (1075)
Q Consensus       808 ~I~~~~~~D~G~Y~C~A~N~~----G~~~~s~~l~V~~~~~---------~~~p~~~~~~~-~~~~~g~~~~L~C~v~g~  873 (1075)
                      .|.+++.+|+|.|+|.|.|..    +.......|.|..++.         ...|.+...+. ..+.+|++++|.|.+.+.
T Consensus        89 ~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~  168 (257)
T 3gkz_A           89 QLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSS  168 (257)
T ss_dssp             EECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSC
T ss_pred             EECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccC
Confidence            999999999999999999972    2222345677765411         12344444433 347899999999999998


Q ss_pred             CCC-eeEEEEC--CEEcC---------------------CCCeeEEEECCCCceeeEEEEEEEEeCCeeE
Q psy16863        874 PQP-TLKWFKD--GRELK---------------------AGDIHKIISGEDGTCCLGIYTCEAHNCMGTT  919 (1075)
Q Consensus       874 p~p-~v~W~k~--g~~l~---------------------~~~~~~i~~~~~~~~d~G~Y~C~a~N~~G~~  919 (1075)
                      |.+ .+.|||+  |..+.                     .+....|.+......|+|.|.|.|.|.....
T Consensus       169 ~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~  238 (257)
T 3gkz_A          169 VSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFT  238 (257)
T ss_dssp             CCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCE
T ss_pred             ccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceE
Confidence            887 8999993  33221                     1123457788888899999999999865433

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.69  E-value=2.1e-16  Score=162.62  Aligned_cols=163  Identities=13%  Similarity=0.190  Sum_probs=115.2

Q ss_pred             eeeeecCCeEEEEEEEecCC--CCeEEEEECC--E---Eee--------------cCCcEEEEEe-eCcEEEEEEccccC
Q psy16863        757 SCQATVNEEFKFTVQVSISP--EPKVSWFRDD--Q---QVV--------------ESDNVKILKE-TLGVCHLKIHALEV  814 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~g~p--~p~v~W~k~g--~---~i~--------------~~~~~~~~~~-~~~~~~L~I~~~~~  814 (1075)
                      ...+.+|++++|.|.+.+.|  .+.+.|||..  .   .+.              ...|+.+..+ ..+...|+|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (220)
T 2fbj_H            9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS   88 (220)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred             CeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCCh
Confidence            46688999999999999876  6799999853  2   111              1246766543 23567999999999


Q ss_pred             CCCeEEEEEEEeCCceE---EEEEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEcc-CC--CeeEEEECCEEcC
Q psy16863        815 ADQAEWKCIATNDFGQS---ITSCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGV-PQ--PTLKWFKDGRELK  888 (1075)
Q Consensus       815 ~D~G~Y~C~A~N~~G~~---~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~-p~--p~v~W~k~g~~l~  888 (1075)
                      +|+|.|.|.+.|..+..   .....|.|..++ ..+|.+.......+.+|+.++|.|.+.|. |.  +.|+|+|+|..+.
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~-~~~P~v~~~~~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~  167 (220)
T 2fbj_H           89 EDTALYYCARLHYYGYNAYWGQGTLVTVSAES-ARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDIT  167 (220)
T ss_dssp             GGCEEEEEEEEETTTEEEEECCCEEEEECSSC-CBCCEEEEECCCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCE
T ss_pred             hhCEEEEEEEeccccccceecCCEEEEecCCC-CCCCEEEEeecccccCCCcEEEEEEEEeEECCCcEEEEEecCCEecc
Confidence            99999999999986531   123567776432 23455433222235689999999999987 76  7999999997651


Q ss_pred             ---------CCCeeE----EEECCCCceeeEEEEEEEEeCCeeEE
Q psy16863        889 ---------AGDIHK----IISGEDGTCCLGIYTCEAHNCMGTTS  920 (1075)
Q Consensus       889 ---------~~~~~~----i~~~~~~~~d~G~Y~C~a~N~~G~~~  920 (1075)
                               .+..+.    |.+......|.|.|+|.|.|..|+..
T Consensus       168 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          168 TVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             EEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             eEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence                     122222    44444444578999999999999865

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.69  E-value=4.1e-16  Score=154.86  Aligned_cols=120  Identities=15%  Similarity=0.234  Sum_probs=94.6

Q ss_pred             eeeecCCeEEEEEEEecCCCC--eEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEE
Q psy16863        758 CQATVNEEFKFTVQVSISPEP--KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSC  835 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p~p--~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~  835 (1075)
                      +.+..|++++|.|.+ +.|.|  .|+|++.+..+   .+...   ..+...|.|.+++.+|+|.|.|.|.|..|....++
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~~~~---~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~   89 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GAVQS---DTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTV   89 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CCEEE---ESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---CcEEe---cCCccEEEECccCcccCceEEEEEEeCCCceEEEE
Confidence            578999999999999 89888  99999966544   22222   23456899999999999999999999999988889


Q ss_pred             EEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEcc-CC----CeeEEEECCEEcCCC
Q psy16863        836 FLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGV-PQ----PTLKWFKDGRELKAG  890 (1075)
Q Consensus       836 ~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~-p~----p~v~W~k~g~~l~~~  890 (1075)
                      .|.|..+|..  +.. ..  ..+.+|+.+ |.|.+.|. |.    ++|+|||||.+|...
T Consensus        90 ~ltV~~~P~~--~~i-~~--~~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~  143 (210)
T 1gsm_A           90 QLLVYAFPNQ--LTV-SP--AALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGA  143 (210)
T ss_dssp             EEEEEBCCSE--EEE-ES--SSBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTC
T ss_pred             EEEEEecCCC--cEE-cc--ceEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccc
Confidence            9999876532  111 11  245678888 99999986 64    489999999999643

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.69  E-value=1.1e-16  Score=162.43  Aligned_cols=161  Identities=14%  Similarity=0.233  Sum_probs=113.0

Q ss_pred             ceeeccCCeEEEEEEEec----CCCcEEEEEECCEecCC------------CCcEEEEEcCCEEEEEEcccCCCCceeEE
Q psy16863        358 DIAVKVGTRARLLVEIRS----PTEIKIHWYRNDRKLEE------------NKIYRTQHDGNFYFIDLSSVSLFDSGRWT  421 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~~g----~p~~~v~W~k~g~~l~~------------~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~  421 (1075)
                      .+.+.+|+++.|.|.+.+    .|.+.+.|+|++..+..            ..+..+...+ ...|.|.+++.+|+|.|+
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~-~~~L~I~~v~~~D~G~Y~   81 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITN-NLSIVILALRPSDEGTYE   81 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTT-TTEEEECSCCGGGCEEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCC-CcEEEEecccchhCeEEE
Confidence            467889999999999853    35679999999987621            1233322222 235999999999999999


Q ss_pred             EEEEeCCCcee-----eEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEE-CCCCCeEEEEeCCEeccCCC----
Q psy16863        422 CLAENAVGRSH-----CSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVM-GIPTPQLIWYKDNKKIKAGD----  491 (1075)
Q Consensus       422 C~a~n~~g~~~-----~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~-g~p~~~v~W~~~g~~l~~~~----  491 (1075)
                      |.|.|..|...     ....|.|..+  ...|.+....   ...|+.+.|.|.+. |.|.|.|+|+|+|+.+....    
T Consensus        82 C~~~~~~g~~~~~~~~~~~~l~V~~~--~~~p~~~~~~---~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~  156 (201)
T 1dr9_A           82 CVVLKYEKDAFKREHLAEVTLSVKAD--FPTPSISDFE---IPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVS  156 (201)
T ss_dssp             EEEEECCTTSCEEEEEEEEEEEEECC--CCCCEEEEEE---CSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEE
T ss_pred             EEEEcCCCCccccccccEEEEEEcCC--CCCCceEecc---CCCCCeEEEEEecCCccCCCEEEEEECCEECccccceEE
Confidence            99999877653     3455555543  2334433221   24588999999995 99999999999999886432    


Q ss_pred             ------EEEE-EeCCCCCCCcEEEEEEEEecceeeEEEEE
Q psy16863        492 ------IFAL-TANPKDPSSLGTYTCEAVNCMGAAFSTSR  524 (1075)
Q Consensus       492 ------~~~l-~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  524 (1075)
                            .+.+ .+..+...|.|.|+|.|.|..|.....+.
T Consensus       157 ~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~  196 (201)
T 1dr9_A          157 QDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFN  196 (201)
T ss_dssp             ECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEE
T ss_pred             ecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEe
Confidence                  1111 11223457899999999999998766554

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.69  E-value=3.4e-17  Score=169.36  Aligned_cols=171  Identities=20%  Similarity=0.264  Sum_probs=122.0

Q ss_pred             CceeeccCCeEEEEEEEecCCC-----cEEEEEECCEec-------------CCCCcEEEEEc---CCEEEEEEcccCCC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPTE-----IKIHWYRNDRKL-------------EENKIYRTQHD---GNFYFIDLSSVSLF  415 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p~-----~~v~W~k~g~~l-------------~~~~~~~~~~~---g~~~~L~I~~v~~~  415 (1075)
                      ..+.+.+|++++|.|.+.+.|.     +.|.|+|++...             ....++.+..+   .....|.|.+++.+
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~   82 (222)
T 4i0k_A            3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVT   82 (222)
T ss_dssp             CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGG
T ss_pred             CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccc
Confidence            3467889999999999987654     799999987433             11223332221   11345999999999


Q ss_pred             CceeEEEEEEeCCCceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEE-ECCCCCeEEEEe-CCEeccCCC--
Q psy16863        416 DSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKV-MGIPTPQLIWYK-DNKKIKAGD--  491 (1075)
Q Consensus       416 d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~v~W~~-~g~~l~~~~--  491 (1075)
                      |+|.|+|.+.|. +.......|.|..++  ..|.+.......+.+|+.+.|.|.+ .|.|.+.+.|++ ++..+....  
T Consensus        83 D~G~Y~C~~~~~-~~~~~~~~l~V~~~~--~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~  159 (222)
T 4i0k_A           83 DEGSYTCFVSIQ-DFDSAAVSLQVAAPY--SKPSMTLEPNKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTT  159 (222)
T ss_dssp             GCSCEEEEEEEC-CCCCCCCCCCCCBCC--CCCEEECCC-----CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEE
T ss_pred             cCEEEEEEEEeC-CCceEEEEEEEEcCC--CCCcEEeCCCceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcce
Confidence            999999999986 444455556665442  3455555554557789999999999 789999999999 555543211  


Q ss_pred             ---------EEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEecc
Q psy16863        492 ---------IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQ  530 (1075)
Q Consensus       492 ---------~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~~~  530 (1075)
                               ...|.+..+..+|+|.|+|.|.|..|....++.|.|.++
T Consensus       160 ~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  207 (222)
T 4i0k_A          160 SQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQ  207 (222)
T ss_dssp             EEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC-
T ss_pred             eEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCC
Confidence                     123677778889999999999999999999999988753

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.69  E-value=1e-16  Score=165.81  Aligned_cols=162  Identities=15%  Similarity=0.244  Sum_probs=112.1

Q ss_pred             eeeeecCCeEEEEEEEecCC--CCeEEEEECC--EEee-----------------cCCcEEEEEee-CcEEEEEEccccC
Q psy16863        757 SCQATVNEEFKFTVQVSISP--EPKVSWFRDD--QQVV-----------------ESDNVKILKET-LGVCHLKIHALEV  814 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~g~p--~p~v~W~k~g--~~i~-----------------~~~~~~~~~~~-~~~~~L~I~~~~~  814 (1075)
                      ...+.+|++++|.|.+.+.|  .+.+.|||++  ..+.                 ...++.+..+. .+...|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (225)
T 1op3_H            9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRV   88 (225)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCCh
Confidence            45688999999999999877  7899999853  2110                 12466665432 3567999999999


Q ss_pred             CCCeEEEEEEEeCCc-----e---EEEEEEEEEEecCCCCCCeee-eecceeecCCCeEEEEEEEEcc-CCC-eeEEEEC
Q psy16863        815 ADQAEWKCIATNDFG-----Q---SITSCFLKLNVPKHYKKPKFL-EELKAVLSEGGAVNLECKVIGV-PQP-TLKWFKD  883 (1075)
Q Consensus       815 ~D~G~Y~C~A~N~~G-----~---~~~s~~l~V~~~~~~~~p~~~-~~~~~~~~~g~~~~L~C~v~g~-p~p-~v~W~k~  883 (1075)
                      +|+|.|.|.|.|..|     .   ......|.|...+. .+|.+. ......+.+|+.++|.|.+.|. |.| .|+|+||
T Consensus        89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~-~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  167 (225)
T 1op3_H           89 EDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPAST-KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSG  167 (225)
T ss_dssp             GGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSC-BCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECCTT
T ss_pred             hhCEEEEEEEecCCCccccccceeecCCEEEecccCCC-cCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEecC
Confidence            999999999999875     2   11245777775321 234332 2222235689999999999987 776 9999999


Q ss_pred             CEEcC---------CCCee----EEEECCCCceeeEEEEEEEEeCCeeEE
Q psy16863        884 GRELK---------AGDIH----KIISGEDGTCCLGIYTCEAHNCMGTTS  920 (1075)
Q Consensus       884 g~~l~---------~~~~~----~i~~~~~~~~d~G~Y~C~a~N~~G~~~  920 (1075)
                      |..+.         .+..+    .|.+......| |.|+|.|.|..+...
T Consensus       168 ~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~  216 (225)
T 1op3_H          168 ALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  216 (225)
T ss_dssp             SCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred             CCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCcc
Confidence            97642         11222    23443343346 999999999877644

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.69  E-value=3.5e-16  Score=165.87  Aligned_cols=167  Identities=15%  Similarity=0.220  Sum_probs=119.7

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCC------CCeEEEEEC--CEE---ee---------cCCcEEEEEeeCcEEEE
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISP------EPKVSWFRD--DQQ---VV---------ESDNVKILKETLGVCHL  807 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p------~p~v~W~k~--g~~---i~---------~~~~~~~~~~~~~~~~L  807 (1075)
                      .+.+...+..+.+.+|++++|.|.+.+.|      .+.+.|||+  |..   +.         ...++.+.. ..+...|
T Consensus         5 ~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~-~~~~~~L   83 (264)
T 2gjj_A            5 DIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSG-SGTDFTL   83 (264)
T ss_dssp             CCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-ETTEEEE
T ss_pred             ccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEec-CCCEEEE
Confidence            45666667778899999999999999888      689999995  321   11         135676654 3457799


Q ss_pred             EEccccCCCCeEEEEEEEeCCceEE-EEEEEEEEecCC-------------C--CCCeeeeecceeecCCCeEEEEEEEE
Q psy16863        808 KIHALEVADQAEWKCIATNDFGQSI-TSCFLKLNVPKH-------------Y--KKPKFLEELKAVLSEGGAVNLECKVI  871 (1075)
Q Consensus       808 ~I~~~~~~D~G~Y~C~A~N~~G~~~-~s~~l~V~~~~~-------------~--~~p~~~~~~~~~~~~g~~~~L~C~v~  871 (1075)
                      .|.+++.+|+|.|.|.|.|..+... ....|.|..++.             .  ..+.+.......+.+|++++|.|.+.
T Consensus        84 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~  163 (264)
T 2gjj_A           84 TIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKAS  163 (264)
T ss_dssp             EESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEE
T ss_pred             EECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEe
Confidence            9999999999999999999865322 245778876531             0  11122233334578999999999999


Q ss_pred             ccCC--CeeEEEEC--CEE---cC---------------C----------CCeeEEEECCCCceeeEEEEEEEEeC
Q psy16863        872 GVPQ--PTLKWFKD--GRE---LK---------------A----------GDIHKIISGEDGTCCLGIYTCEAHNC  915 (1075)
Q Consensus       872 g~p~--p~v~W~k~--g~~---l~---------------~----------~~~~~i~~~~~~~~d~G~Y~C~a~N~  915 (1075)
                      +.|.  +.|.|||+  |..   |.               .          +....|.+......|+|.|.|.|.|.
T Consensus       164 ~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          164 GYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             SSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             CCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            9874  78999996  321   10               0          12346777778889999999999995

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.69  E-value=2.9e-16  Score=166.24  Aligned_cols=159  Identities=16%  Similarity=0.266  Sum_probs=113.8

Q ss_pred             eeeeecCCeEEEEEEEecC--CCCeEEEEECC--EE---ee---------cCCcEEEEEeeCcEEEEEEccccCCCCeEE
Q psy16863        757 SCQATVNEEFKFTVQVSIS--PEPKVSWFRDD--QQ---VV---------ESDNVKILKETLGVCHLKIHALEVADQAEW  820 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~g~--p~p~v~W~k~g--~~---i~---------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y  820 (1075)
                      ...+.+|++++|.|.+.+.  |.+.+.|||++  ..   +.         ...++.+.. ..+.+.|.|.+++.+|+|.|
T Consensus        11 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~DsG~Y   89 (256)
T 3ux9_B           11 SVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSK-SGTSASLAITGLQSEDEADY   89 (256)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE-ETTEEEEEECSCCGGGCEEE
T ss_pred             cEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEc-cCCEEEEEECCCChhhCEEE
Confidence            4678999999999999987  78899999952  21   11         234666643 34577999999999999999


Q ss_pred             EEEEEeCCceEE---EEEEEEEEecCCCC----------------CCeeeeecceeecCCCeEEEEEEEEccC--CCeeE
Q psy16863        821 KCIATNDFGQSI---TSCFLKLNVPKHYK----------------KPKFLEELKAVLSEGGAVNLECKVIGVP--QPTLK  879 (1075)
Q Consensus       821 ~C~A~N~~G~~~---~s~~l~V~~~~~~~----------------~p~~~~~~~~~~~~g~~~~L~C~v~g~p--~p~v~  879 (1075)
                      .|.|.|..|...   ....|.|..++...                .+.+.......+.+|++++|.|.+.+.|  .+.+.
T Consensus        90 ~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~  169 (256)
T 3ux9_B           90 YCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMS  169 (256)
T ss_dssp             EEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEE
T ss_pred             EEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCcccccEEE
Confidence            999999765322   24567776544211                2234444444578999999999999987  68999


Q ss_pred             EEEC--CEEc------C----------------------CCCeeEEEECCCCceeeEEEEEEEEeCC
Q psy16863        880 WFKD--GREL------K----------------------AGDIHKIISGEDGTCCLGIYTCEAHNCM  916 (1075)
Q Consensus       880 W~k~--g~~l------~----------------------~~~~~~i~~~~~~~~d~G~Y~C~a~N~~  916 (1075)
                      |||+  |..+      .                      .+....|.+......|+|.|+|.|.|..
T Consensus       170 W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          170 WVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             EEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence            9996  4322      0                      1234457788888899999999999963

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.69  E-value=6.2e-17  Score=168.90  Aligned_cols=164  Identities=16%  Similarity=0.184  Sum_probs=117.7

Q ss_pred             cCceeeccCCeEEEEEEEecCC-Cc-EEEEEECC--Eec------------CCCCcEEEEEcCCEEEEEEcccCCCCcee
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPT-EI-KIHWYRND--RKL------------EENKIYRTQHDGNFYFIDLSSVSLFDSGR  419 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p-~~-~v~W~k~g--~~l------------~~~~~~~~~~~g~~~~L~I~~v~~~d~G~  419 (1075)
                      +..+.+.+|++++|.|.+.+.+ .+ .|.|||++  ..+            ....++.....+....|.|.+++.+|+|.
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  105 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD  105 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence            6677899999999999998754 34 79999963  222            11356666666677789999999999999


Q ss_pred             EEEEEEeCCCc---eeeEEEEEeecCCCCCCCeeee-ecceEEecCCeEEEEEEEECCC-C-CeEEEEeCCEeccCCC--
Q psy16863        420 WTCLAENAVGR---SHCSCELSVLVPKAYKAPFFTK-ELEAILTEQGTVSLECKVMGIP-T-PQLIWYKDNKKIKAGD--  491 (1075)
Q Consensus       420 Y~C~a~n~~g~---~~~s~~l~V~~~~~~~~p~~~~-~~~~~~~~g~~v~l~C~~~g~p-~-~~v~W~~~g~~l~~~~--  491 (1075)
                      |+|.|.|..+.   ......|.|...+. .+|.+.. .......+|+.++|.|.+.|.+ + +.|+|+|||+++..+.  
T Consensus       106 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~-~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~  184 (234)
T 2j6e_L          106 YYCATWDDSLSAVIFGGGTKLTVLGQPK-AAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVET  184 (234)
T ss_dssp             EEEEEEETTTTEEEECCCBCCCBCCCCC-CCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEE
T ss_pred             EEEEEEcCCcceeEecCCEEEEEecCCC-CCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCccc
Confidence            99999998872   22234555643221 2333332 2222234688999999999854 3 3899999999885431  


Q ss_pred             -------------EEEEEeCCCCCCCcEEEEEEEEecceeeE
Q psy16863        492 -------------IFALTANPKDPSSLGTYTCEAVNCMGAAF  520 (1075)
Q Consensus       492 -------------~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  520 (1075)
                                   ...|.|.....+|+|.|+|.|.|..+...
T Consensus       185 ~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  226 (234)
T 2j6e_L          185 TKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVE  226 (234)
T ss_dssp             CCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCC
T ss_pred             cCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceE
Confidence                         13577888888999999999999876543

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.69  E-value=1.4e-17  Score=168.67  Aligned_cols=143  Identities=15%  Similarity=0.201  Sum_probs=102.0

Q ss_pred             eccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEee
Q psy16863        361 VKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL  440 (1075)
Q Consensus       361 v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~  440 (1075)
                      +.+|++++|.|.+   |.+.|+|+|||..+...       .+....|.|.+++.+|+|.|+|.+.+.. .  ....|.|.
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~-------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~-s--~~~~v~v~   81 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL-------TEDKKKWNLGSNAKDPRGMYQCKGSQNK-S--KPLQVYYR   81 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEEEEE-------ESSCCCEEEEEGGGCCEEEEEEESSSSC-C--CCEEEEEE
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEECCCC-------CCCCCeEEeCCCCcCCCEEEEEEecCCC-C--eeEEEEEE
Confidence            4689999999998   67899999999887532       1122358899999999999999975532 2  22444444


Q ss_pred             cC-------------------------C-CCCCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccCC----
Q psy16863        441 VP-------------------------K-AYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAG----  490 (1075)
Q Consensus       441 ~~-------------------------~-~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~----  490 (1075)
                      ..                         . ...++.+...+..+..+|++++|.|.  |.|.+.|+|+|+|..+...    
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~  159 (204)
T 1sy6_A           82 MGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDK  159 (204)
T ss_dssp             C------------------------------------CCCCEEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTTCT
T ss_pred             EeccccccccccccccccccccccccccccccccceecCCceeeecCCcEEEEcC--CCCCCceEEEECCEECCCccCCc
Confidence            10                         0 00012222222223348999999999  8899999999999988543    


Q ss_pred             ----CEEEEEeCCC-CCCCcEEEEEEEEeccee
Q psy16863        491 ----DIFALTANPK-DPSSLGTYTCEAVNCMGA  518 (1075)
Q Consensus       491 ----~~~~l~i~~~-~~~d~G~Y~C~a~n~~g~  518 (1075)
                          ....|.|.++ ..+|+|.|+|.|.|..|.
T Consensus       160 ~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~  192 (204)
T 1sy6_A          160 NIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPE  192 (204)
T ss_dssp             TEEEETTEEEETTCCHHHHCEEEEEEETTSCGG
T ss_pred             eEecCCCEEEEeeCCccccCEEEEEEeccCCCC
Confidence                1236899999 999999999999999986

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.69  E-value=2.4e-16  Score=161.85  Aligned_cols=169  Identities=15%  Similarity=0.188  Sum_probs=118.6

Q ss_pred             eecCceeeccCCeEEEEEEEecC-------CCcEEEEEECCEec-----------------CCCCcEEEEEc--CCEEEE
Q psy16863        354 RRLHDIAVKVGTRARLLVEIRSP-------TEIKIHWYRNDRKL-----------------EENKIYRTQHD--GNFYFI  407 (1075)
Q Consensus       354 ~~~~~~~v~~G~~v~l~C~~~g~-------p~~~v~W~k~g~~l-----------------~~~~~~~~~~~--g~~~~L  407 (1075)
                      ..+..+.+.+|++++|.|.+.+.       +.+.+.|||++...                 ....++.+..+  .....|
T Consensus         5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL   84 (214)
T 2zg1_A            5 QVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSL   84 (214)
T ss_dssp             ECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCE
T ss_pred             eCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEE
Confidence            34567789999999999999764       57899999987531                 11235544332  223469


Q ss_pred             EEcccCCCCceeEEEEEEeCCCcee----eEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECC----CCCeEE
Q psy16863        408 DLSSVSLFDSGRWTCLAENAVGRSH----CSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGI----PTPQLI  479 (1075)
Q Consensus       408 ~I~~v~~~d~G~Y~C~a~n~~g~~~----~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~----p~~~v~  479 (1075)
                      .|.+++.+|+|.|.|.+.|..+...    ....|.|..++.  +|.+..+.  .+.+|+.++|.|.+.+.    |.|.++
T Consensus        85 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~--~p~i~~~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~  160 (214)
T 2zg1_A           85 SIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIE--KPDIHFLE--PLESGRPTRLSCSLPGSCEAGPPLTFS  160 (214)
T ss_dssp             EECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCC--CCEEC--C--CCCTTCCEEEEEECTTCCSCSSCCEEE
T ss_pred             EEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCC--CCceecCc--cccCCCeEEEEEEeccCCCCCCCceEE
Confidence            9999999999999999999864321    356677776432  34443322  26789999999999764    888999


Q ss_pred             EEeCCEeccC---CCEEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEE
Q psy16863        480 WYKDNKKIKA---GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI  526 (1075)
Q Consensus       480 W~~~g~~l~~---~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~  526 (1075)
                      |+|++..+..   .....|.|..+..+|+|.|+|.|.|..+....+..+.
T Consensus       161 W~~~~~~~~~~~~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~  210 (214)
T 2zg1_A          161 WTGNALSPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQ  210 (214)
T ss_dssp             EESSTTSSSCSSCCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEE
T ss_pred             EeCCCCccCCCCceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEE
Confidence            9999876432   2234788888989999999999999876554444443

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.68  E-value=1.6e-16  Score=139.20  Aligned_cols=93  Identities=14%  Similarity=0.236  Sum_probs=82.9

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCC--cEEEEEeeCcEEEEEEccccCCCCeEEEEEE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESD--NVKILKETLGVCHLKIHALEVADQAEWKCIA  824 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A  824 (1075)
                      .||.|...+.+..+.+|+.+.|.|.+.|.|.|.|+|+|||++|..+.  ++.+... .+.+.|.|.+++.+|+|.|+|.|
T Consensus         4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a   82 (100)
T 3knb_A            4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENT-DDLTTLIIMDVQKQDGGLYTLSL   82 (100)
T ss_dssp             EEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEEC-SSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecc-cceEEEEEcCCCccCCEEEEEEE
Confidence            58899988999999999999999999999999999999999997654  5665543 45779999999999999999999


Q ss_pred             EeCCceEEEEEEEEEE
Q psy16863        825 TNDFGQSITSCFLKLN  840 (1075)
Q Consensus       825 ~N~~G~~~~s~~l~V~  840 (1075)
                      +|.+|.++.++.|.|+
T Consensus        83 ~N~~G~~~~~~~l~V~   98 (100)
T 3knb_A           83 GNEFGSDSATVNIHIR   98 (100)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EECCCEEEEEEEEEEE
Confidence            9999999989988886

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.68  E-value=8.4e-18  Score=175.33  Aligned_cols=168  Identities=15%  Similarity=0.238  Sum_probs=95.1

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECC--EEe---e---------cCCcEEEEEeeCcEEEEEEcccc
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDD--QQV---V---------ESDNVKILKETLGVCHLKIHALE  813 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g--~~i---~---------~~~~~~~~~~~~~~~~L~I~~~~  813 (1075)
                      .+.+...+....+.+|++++|.|.+.+.|.+.|.|+|++  ..+   .         ...++.+.. ..+.+.|.|.+++
T Consensus        23 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~  101 (233)
T 3bqu_C           23 ETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSG-YGTDFVFTIENML  101 (233)
T ss_dssp             CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCE-EEEEEEEC-----
T ss_pred             ceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeec-cCCEEEEEECCCC
Confidence            455666677788999999999999999888899999853  211   0         123444332 2245689999999


Q ss_pred             CCCCeEEEEEEEeCCceEEE-EEEEEEEecCCCCCCeeeeec-ceeecCCCeEEEEEEEEccCCC--eeEEEECCEEcCC
Q psy16863        814 VADQAEWKCIATNDFGQSIT-SCFLKLNVPKHYKKPKFLEEL-KAVLSEGGAVNLECKVIGVPQP--TLKWFKDGRELKA  889 (1075)
Q Consensus       814 ~~D~G~Y~C~A~N~~G~~~~-s~~l~V~~~~~~~~p~~~~~~-~~~~~~g~~~~L~C~v~g~p~p--~v~W~k~g~~l~~  889 (1075)
                      .+|+|.|+|.|.|..+.... ...|.|..+.  .+|.+.... ...+.+|+.++|.|.+.|.+++  .|+|+|||.++..
T Consensus       102 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~--~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~  179 (233)
T 3bqu_C          102 SEDVADYYCLQSDNLPYTFGGGTNLEIKRAD--AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQN  179 (233)
T ss_dssp             CCCCSEEEEEECSSSSCCBCCCCBC---CCC--BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----C
T ss_pred             HHHCEEEEEEEecCCceeecCCEEEEEeCCC--CCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCC
Confidence            99999999999998764221 2345665422  245443322 1123468999999999986543  7999999998865


Q ss_pred             CCe----------------eEEEECCCCceeeEEEEEEEEeCCee
Q psy16863        890 GDI----------------HKIISGEDGTCCLGIYTCEAHNCMGT  918 (1075)
Q Consensus       890 ~~~----------------~~i~~~~~~~~d~G~Y~C~a~N~~G~  918 (1075)
                      +..                ..|.+......|+|.|+|.|.|....
T Consensus       180 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          180 GVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  224 (233)
T ss_dssp             CEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred             CceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            511                12233333345789999999997543

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.68  E-value=7e-16  Score=162.28  Aligned_cols=165  Identities=15%  Similarity=0.228  Sum_probs=119.9

Q ss_pred             eeeeecCceeeccCCeEEEEEEEecCC-----CcEEEEEECC--Ee---cC---------CCCcEEEEEcCCEEEEEEcc
Q psy16863        351 AFIRRLHDIAVKVGTRARLLVEIRSPT-----EIKIHWYRND--RK---LE---------ENKIYRTQHDGNFYFIDLSS  411 (1075)
Q Consensus       351 ~~~~~~~~~~v~~G~~v~l~C~~~g~p-----~~~v~W~k~g--~~---l~---------~~~~~~~~~~g~~~~L~I~~  411 (1075)
                      .+...+..+.+.+|++++|.|.+.+.+     .+.+.|||++  ..   +.         ...++.+...+....|.|.+
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   82 (247)
T 1svz_A            3 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISR   82 (247)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred             cEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECC
Confidence            345566778999999999999998877     6899999953  21   10         13567776677777899999


Q ss_pred             cCCCCceeEEEEEEeCCCce-eeEEEEEeecCCCC---------CCCeeeeecceEEecCCeEEEEEEEECCC--CCeEE
Q psy16863        412 VSLFDSGRWTCLAENAVGRS-HCSCELSVLVPKAY---------KAPFFTKELEAILTEQGTVSLECKVMGIP--TPQLI  479 (1075)
Q Consensus       412 v~~~d~G~Y~C~a~n~~g~~-~~s~~l~V~~~~~~---------~~p~~~~~~~~~~~~g~~v~l~C~~~g~p--~~~v~  479 (1075)
                      ++.+|+|.|.|.|.|..+.. ...+.|.|..++..         .++.+.......+.+|++++|.|.+.+.|  .+.+.
T Consensus        83 v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~  162 (247)
T 1svz_A           83 VEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMH  162 (247)
T ss_dssp             CCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEE
T ss_pred             CCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEE
Confidence            99999999999999976542 23467777765320         12233444445588999999999999875  56999


Q ss_pred             EEeCC--Eec-------------------c---------CCCEEEEEeCCCCCCCcEEEEEEEEec
Q psy16863        480 WYKDN--KKI-------------------K---------AGDIFALTANPKDPSSLGTYTCEAVNC  515 (1075)
Q Consensus       480 W~~~g--~~l-------------------~---------~~~~~~l~i~~~~~~d~G~Y~C~a~n~  515 (1075)
                      |+|++  ..+                   .         ......|.|.++..+|+|.|.|.|.|.
T Consensus       163 W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          163 WVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             EEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             EEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            99963  211                   0         112357999999999999999999995

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.68  E-value=1e-15  Score=161.82  Aligned_cols=188  Identities=11%  Similarity=0.144  Sum_probs=130.5

Q ss_pred             CCCccccccccceeeccceeEEEEEecCC----CceEEEEe-cCCCeeeE-Eec-CCCcc----ccCCCeEEEee--CCe
Q psy16863        241 DAPAFIRRLHDIAVKVGTRARLLVEIRSP----TEIKCQFD-LNNTIPFS-FRA-QGDHP----IFGNRFRAINR--DGR  307 (1075)
Q Consensus       241 ~~p~~~~~~~~~~v~~g~~~~l~c~~~~~----~~~~c~~~-~~~~~~~~-w~~-~~~~~----~~~~~~~~~~~--~~~  307 (1075)
                      .+|.+...+..+.+.+|+.++|.|.+.+.    ..+.|.-. .+....+. +.. .++..    ....++.+..+  .+.
T Consensus         5 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   84 (256)
T 3juy_B            5 HHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT   84 (256)
T ss_dssp             --CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE
T ss_pred             cceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCE
Confidence            45667788899999999999999998752    12222111 11111111 111 11110    11357777643  456


Q ss_pred             EEEEEcccCCCCCEEEEEEEEeC------------CeeEEEEEEEEEecCCC-----------CCCeeeeecCceeeccC
Q psy16863        308 TELNIRRVRRDDGGRYSVTASNE------------SGYSTAKFELSVESQVP-----------DAPAFIRRLHDIAVKVG  364 (1075)
Q Consensus       308 ~~L~I~~~~~~d~G~Y~C~a~n~------------~g~~~~~~~l~V~~~~~-----------~~p~~~~~~~~~~v~~G  364 (1075)
                      .+|+|.+++.+|+|.|.|.|.|.            .+.....+.|.|.....           .+|.+...+....+.+|
T Consensus        85 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G  164 (256)
T 3juy_B           85 AYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPG  164 (256)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTT
T ss_pred             EEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCC
Confidence            78999999999999999999986            34444556777775221           15667778888999999


Q ss_pred             CeEEEEEEEecCCC-cEEEEEEC--CEecC------------CCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCC
Q psy16863        365 TRARLLVEIRSPTE-IKIHWYRN--DRKLE------------ENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAV  428 (1075)
Q Consensus       365 ~~v~l~C~~~g~p~-~~v~W~k~--g~~l~------------~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~  428 (1075)
                      ++++|.|.+.+.+. +.+.|||.  +..+.            ...++.+..++....|.|.+++.+|+|.|.|.|.|..
T Consensus       165 ~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  243 (256)
T 3juy_B          165 ERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGAS  243 (256)
T ss_dssp             SCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSS
T ss_pred             CCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCC
Confidence            99999999988775 89999993  32221            2356777677778889999999999999999999854

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.68  E-value=4.3e-16  Score=162.89  Aligned_cols=164  Identities=16%  Similarity=0.262  Sum_probs=115.1

Q ss_pred             eeeecCceeeccCCeEEEEEEEecCCCcEEEEEEC--CEec---------------CCCCcEEEEE-cCCEEEEEEcccC
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DRKL---------------EENKIYRTQH-DGNFYFIDLSSVS  413 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~l---------------~~~~~~~~~~-~g~~~~L~I~~v~  413 (1075)
                      +...+..+.+.+|++++|.|. .+.|.+.|.|+|+  +..+               ....++.+.. .+....|.|.+++
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~   81 (238)
T 2p1y_A            3 VTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELAT   81 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCC
T ss_pred             ceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCC
Confidence            445667788999999999999 6888899999996  2111               1123555543 3345579999999


Q ss_pred             CCCceeEEEEEEeCCCce-----eeEEEEEeecCCCCC-------CCeeeeecce-EEecCCeEEEEEEEECCCCCeEEE
Q psy16863        414 LFDSGRWTCLAENAVGRS-----HCSCELSVLVPKAYK-------APFFTKELEA-ILTEQGTVSLECKVMGIPTPQLIW  480 (1075)
Q Consensus       414 ~~d~G~Y~C~a~n~~g~~-----~~s~~l~V~~~~~~~-------~p~~~~~~~~-~~~~g~~v~l~C~~~g~p~~~v~W  480 (1075)
                      .+|+|.|.|.|.|..|..     .....|.|...+...       .+.+...+.. .+.+|++++|.|.+.+.|.+.+.|
T Consensus        82 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W  161 (238)
T 2p1y_A           82 PSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPW  161 (238)
T ss_dssp             GGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEE
T ss_pred             cccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEE
Confidence            999999999999986531     123466666543200       0133333333 488999999999999999999999


Q ss_pred             EeCC--Ee---c--------------------cCCCEEEEEeCCCCCCCcEEEEEEEEecc
Q psy16863        481 YKDN--KK---I--------------------KAGDIFALTANPKDPSSLGTYTCEAVNCM  516 (1075)
Q Consensus       481 ~~~g--~~---l--------------------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  516 (1075)
                      +|++  ..   +                    .......|.|.++..+|+|.|+|.|.|..
T Consensus       162 ~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          162 YQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             EEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             EEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            9964  11   1                    11224579999999999999999999973

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.68  E-value=4.2e-16  Score=160.18  Aligned_cols=174  Identities=14%  Similarity=0.128  Sum_probs=120.6

Q ss_pred             cccceeeccceeEEEEEe-cCCCceEEEEecCCCeeeEEecCCC--cc------------ccCCCeEEEeeCCeEEEEEc
Q psy16863        249 LHDIAVKVGTRARLLVEI-RSPTEIKCQFDLNNTIPFSFRAQGD--HP------------IFGNRFRAINRDGRTELNIR  313 (1075)
Q Consensus       249 ~~~~~v~~g~~~~l~c~~-~~~~~~~c~~~~~~~~~~~w~~~~~--~~------------~~~~~~~~~~~~~~~~L~I~  313 (1075)
                      +....+.+|+.++|.|.+ +.+.         +...+.|++++.  .+            ....++.+...++..+|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~---------~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~   77 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNI---------GNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGIT   77 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTG---------GGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEEC
T ss_pred             CCcEEecCCCeEEEEEEeecCCC---------CCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEEC
Confidence            566788999999999994 4321         123445554321  11            11457777767778899999


Q ss_pred             ccCCCCCEEEEEEEEeCCe--eEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEec-CCCc-EEEEEECCEe
Q psy16863        314 RVRRDDGGRYSVTASNESG--YSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS-PTEI-KIHWYRNDRK  389 (1075)
Q Consensus       314 ~~~~~d~G~Y~C~a~n~~g--~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g-~p~~-~v~W~k~g~~  389 (1075)
                      +++.+|+|.|+|.|.|..+  .......|.|.. ...+|.+...+....+.+|+.++|.|.+.| .|.+ .|+|+|||..
T Consensus        78 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~-~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~  156 (216)
T 2xzc_L           78 GLQTGDEADYYCGTWDSSLNPVFGGGTKLEIKR-TVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL  156 (216)
T ss_dssp             SCCGGGCEEEEEEEECTTSCEEEBCCEEEEECC-CCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             CCCcccCEEEEEEEEeCCCcceECCCEEEEEcC-CCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCee
Confidence            9999999999999999876  223345677753 224677665444444457999999999987 5553 9999999999


Q ss_pred             cCCCCc--EEEE--EcCCE---EEEEEcccCCCCceeEEEEEEeCCCcee
Q psy16863        390 LEENKI--YRTQ--HDGNF---YFIDLSSVSLFDSGRWTCLAENAVGRSH  432 (1075)
Q Consensus       390 l~~~~~--~~~~--~~g~~---~~L~I~~v~~~d~G~Y~C~a~n~~g~~~  432 (1075)
                      +..+..  ....  .++..   ..|.|..+..+|+|.|+|.|.|......
T Consensus       157 ~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  206 (216)
T 2xzc_L          157 QSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP  206 (216)
T ss_dssp             CCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred             cCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCc
Confidence            876511  1111  12222   3689999999999999999999876544

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.68  E-value=3.9e-16  Score=161.16  Aligned_cols=180  Identities=13%  Similarity=0.123  Sum_probs=121.7

Q ss_pred             cccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCC-Cc----------------c----ccCCCeEEEee--C
Q psy16863        249 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG-DH----------------P----IFGNRFRAINR--D  305 (1075)
Q Consensus       249 ~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~-~~----------------~----~~~~~~~~~~~--~  305 (1075)
                      +..+.+.+|+.++|.|.+.+.+.        +...+.|++.+ +.                .    ....++.+..+  .
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~--------~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~   78 (222)
T 1q9r_B            7 SGGGLVQSGGSLRLSCATSGFTF--------TDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQ   78 (222)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCG--------GGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTT
T ss_pred             CCceeEcCCCEEEEEEEecCccC--------CCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCC
Confidence            34567889999999999875320        01233343321 10                0    01356776654  3


Q ss_pred             CeEEEEEcccCCCCCEEEEEEEEeCCe-----eEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecC-CCc
Q psy16863        306 GRTELNIRRVRRDDGGRYSVTASNESG-----YSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSP-TEI  379 (1075)
Q Consensus       306 ~~~~L~I~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p~~  379 (1075)
                      +..+|+|.+++.+|+|.|.|.+.|..+     .....+.|.|......+|.+........+.+|+.++|.|.+.|. |.+
T Consensus        79 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p  158 (222)
T 1q9r_B           79 SILYLQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEP  158 (222)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSC
T ss_pred             CeEEEEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCC
Confidence            567999999999999999999998654     22234577777544456776654444457789999999999884 777


Q ss_pred             -EEEEEECCEecCCCCcEEEEEcCCE---EEEEEcccCCCCceeEEEEEEeCCCceeeEEEE
Q psy16863        380 -KIHWYRNDRKLEENKIYRTQHDGNF---YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCEL  437 (1075)
Q Consensus       380 -~v~W~k~g~~l~~~~~~~~~~~g~~---~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l  437 (1075)
                       .|.|+++|..+..........+|..   ..|.|.++..+| |.|+|.|.|..|.......+
T Consensus       159 ~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i  219 (222)
T 1q9r_B          159 VTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI  219 (222)
T ss_dssp             CEEEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             CEEEEecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEec
Confidence             9999999987643211112233321   358899999899 99999999999876544443

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.68  E-value=3e-16  Score=165.24  Aligned_cols=165  Identities=13%  Similarity=0.211  Sum_probs=111.6

Q ss_pred             ecCceeeccCCeEEEEEEEecCCCcE-----EEEEECCEecCCC--------CcEEEEE----------cCCEEEEEEcc
Q psy16863        355 RLHDIAVKVGTRARLLVEIRSPTEIK-----IHWYRNDRKLEEN--------KIYRTQH----------DGNFYFIDLSS  411 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~~g~p~~~-----v~W~k~g~~l~~~--------~~~~~~~----------~g~~~~L~I~~  411 (1075)
                      .+..+.+.+|++++|.|.+.+.|.+.     |.|+|++......        .......          ......|.|.+
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   88 (248)
T 3pv7_A            9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPG   88 (248)
T ss_dssp             TTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESS
T ss_pred             CCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCC
Confidence            34556788999999999998877664     9999975332110        0000000          01123499999


Q ss_pred             cCCCCceeEEEEEEeCCCceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEEC-CCCC-eEEEEeCCEeccC
Q psy16863        412 VSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMG-IPTP-QLIWYKDNKKIKA  489 (1075)
Q Consensus       412 v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g-~p~~-~v~W~~~g~~l~~  489 (1075)
                      ++.+|+|.|+|.+.|..+.......|.|..+|     .+..........|+.+.|.|.+.| .|.+ .|+|+|+|+++..
T Consensus        89 v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P-----~v~~~~~~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~  163 (248)
T 3pv7_A           89 IQLEEAGEYRCEVVVTPLKAQGTVQLEVVASP-----ASRLLLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPH  163 (248)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEEBCC-----EEEEECC--------CEEEEEEEEEBSSCCEEEEEEECSSSCS
T ss_pred             CCHHHCeEEEEEEEeCCccceeEEEEEEecCC-----ceEEecCCccccCCCcEEEEEEccEECCCeEEEEEECCccCCC
Confidence            99999999999999998887778888887654     344333344556788889999998 8998 9999999964321


Q ss_pred             -----------------CC----EEEEEeCCCCCCCcEEEEEEEEecceeeEEEEE
Q psy16863        490 -----------------GD----IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSR  524 (1075)
Q Consensus       490 -----------------~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  524 (1075)
                                       ..    ...|.+......|.|.|+|.|.|..+.......
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~  219 (248)
T 3pv7_A          164 PIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSN  219 (248)
T ss_dssp             CEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEE
T ss_pred             ccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEE
Confidence                             11    125777888889999999999999887444333

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.67  E-value=5.4e-16  Score=163.73  Aligned_cols=197  Identities=15%  Similarity=0.176  Sum_probs=130.8

Q ss_pred             ccccccceeeccceeEEEEEecCC----CceEEEE-ecCCCeeeEEec--CCC----ccccCCCeEEEee--CCeEEEEE
Q psy16863        246 IRRLHDIAVKVGTRARLLVEIRSP----TEIKCQF-DLNNTIPFSFRA--QGD----HPIFGNRFRAINR--DGRTELNI  312 (1075)
Q Consensus       246 ~~~~~~~~v~~g~~~~l~c~~~~~----~~~~c~~-~~~~~~~~~w~~--~~~----~~~~~~~~~~~~~--~~~~~L~I  312 (1075)
                      +..+.++.+.+|+.++|.|.+.+.    ..+.|.- ..+....+..+.  .+.    ......++.+..+  .+..+|+|
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   84 (253)
T 3uzq_A            5 LEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHL   84 (253)
T ss_dssp             EEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEe
Confidence            445567789999999999998752    2233221 111122221111  010    0111356776654  34678999


Q ss_pred             cccCCCCCEEEEEEEEeCCeeE-EEEEEEEEecC-----------CCCCCeeeeecCceeeccCCeEEEEEEEecCCCc-
Q psy16863        313 RRVRRDDGGRYSVTASNESGYS-TAKFELSVESQ-----------VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEI-  379 (1075)
Q Consensus       313 ~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~-----------~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~-  379 (1075)
                      .+++.+|+|.|.|.|.|..+.. ...+.|.|...           ...+|.+...+....+.+|++++|.|.+.+.+.+ 
T Consensus        85 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~  164 (253)
T 3uzq_A           85 SSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDRY  164 (253)
T ss_dssp             CSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEET
T ss_pred             CCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccccC
Confidence            9999999999999999965542 34566777641           2235677777788899999999999999888766 


Q ss_pred             ---EEEEEEC--CEecC------------CCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCcee-eEEEEEeec
Q psy16863        380 ---KIHWYRN--DRKLE------------ENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSH-CSCELSVLV  441 (1075)
Q Consensus       380 ---~v~W~k~--g~~l~------------~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~-~s~~l~V~~  441 (1075)
                         .+.|||+  +..+.            ...++.....+....|.|.+++.+|+|.|.|.|.|..+... .-..|.|..
T Consensus       165 ~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~  244 (253)
T 3uzq_A          165 GNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIKR  244 (253)
T ss_dssp             TEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECC
T ss_pred             CCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEcC
Confidence               9999995  32221            12466666677778899999999999999999998654322 234566654


Q ss_pred             C
Q psy16863        442 P  442 (1075)
Q Consensus       442 ~  442 (1075)
                      .
T Consensus       245 ~  245 (253)
T 3uzq_A          245 P  245 (253)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.67  E-value=1e-16  Score=157.02  Aligned_cols=152  Identities=15%  Similarity=0.159  Sum_probs=112.6

Q ss_pred             ceeeccCCeEEEEEEEecCCCcEEEEEECCEecCC------------CCcEEEEEcCCEEEEEEcccCCCCceeEEEEEE
Q psy16863        358 DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEE------------NKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAE  425 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~------------~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~  425 (1075)
                      .+.+.+|++++|.|.+. .|.+.|.|+|++..+..            ..|+.+...+  ..|.|.+++.+|+|.|+|.|.
T Consensus         4 ~v~~~~G~~VtL~c~~~-~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~--~sL~I~~v~~~DsG~Y~C~~~   80 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVS--GSLTIYNLTSSDEDEYEMESP   80 (171)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTT--CCEEECSCCGGGCEEEEEECT
T ss_pred             EEEEEcCCCEEEcCCCC-CCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCC--CeEEECCCChhhCceEEEEEe
Confidence            45788999999999984 47899999999875421            1122222111  258999999999999999999


Q ss_pred             eCCCceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEeccCCCEEEEEeCCCCCCCc
Q psy16863        426 NAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL  505 (1075)
Q Consensus       426 n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~~~~~~~l~i~~~~~~d~  505 (1075)
                      |..|  ...+.|.|..++  ..|.+.....       ...|.|.+.+.|.|.|+|+++|..+.......+.+.  ...|+
T Consensus        81 n~~~--~~~~~L~V~~~~--~~p~i~~~~~-------~~~L~C~~~~~p~p~i~W~~~~~~l~~~~~~~l~~~--~~~~~  147 (171)
T 1ccz_A           81 NITD--TMKFFLYVLEMV--SKPMIYWECS-------NATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQ--WTNLR  147 (171)
T ss_dssp             TCCS--CEEEEEEEECCC--CCCEEEEETT-------TTEEEEECSSCSSCEEEEEETTEEEEEESSSEEEEE--CSCCS
T ss_pred             CCCC--cEEEEEEEECcC--CCCEEEEecC-------CcEEEEEeCCCCCcEEEEEECCEECcCCcceEEEEe--ccCCC
Confidence            9877  567778887653  2344433221       137999999989999999999999876555555544  36788


Q ss_pred             EEEEEEEEecceeeEEEEEE
Q psy16863        506 GTYTCEAVNCMGAAFSTSRV  525 (1075)
Q Consensus       506 G~Y~C~a~n~~g~~~~~~~v  525 (1075)
                      |.|+|.|.|..|...+++.+
T Consensus       148 g~Y~C~a~N~~~~~~~~~~l  167 (171)
T 1ccz_A          148 APFKCKAVNRVSQESEMEVV  167 (171)
T ss_dssp             SCEEEEEEETTEEEEEEECC
T ss_pred             ceEEEEEEcccCcccceeEE
Confidence            99999999999987766543

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.67  E-value=1e-15  Score=161.97  Aligned_cols=161  Identities=13%  Similarity=0.237  Sum_probs=118.7

Q ss_pred             cCceeeccCCeEEEEEEEecC--CCcEEEEEECC--Eec------------CCCCcEEEEEcCCEEEEEEcccCCCCcee
Q psy16863        356 LHDIAVKVGTRARLLVEIRSP--TEIKIHWYRND--RKL------------EENKIYRTQHDGNFYFIDLSSVSLFDSGR  419 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~--p~~~v~W~k~g--~~l------------~~~~~~~~~~~g~~~~L~I~~v~~~d~G~  419 (1075)
                      +..+.+.+|++++|.|.+.+.  +.+.+.|||++  ..+            ....++.+...+....|.|.+++.+|+|.
T Consensus         9 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~   88 (256)
T 3ux9_B            9 PPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEAD   88 (256)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEE
Confidence            345789999999999999876  78899999953  111            12357777777778889999999999999


Q ss_pred             EEEEEEeCCCce---eeEEEEEeecCCCCC----------------CCeeeeecceEEecCCeEEEEEEEECCC--CCeE
Q psy16863        420 WTCLAENAVGRS---HCSCELSVLVPKAYK----------------APFFTKELEAILTEQGTVSLECKVMGIP--TPQL  478 (1075)
Q Consensus       420 Y~C~a~n~~g~~---~~s~~l~V~~~~~~~----------------~p~~~~~~~~~~~~g~~v~l~C~~~g~p--~~~v  478 (1075)
                      |.|.+.|..+..   .....|.|..++...                .+.+.......+.+|++++|.|.+.+.|  .+.+
T Consensus        89 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v  168 (256)
T 3ux9_B           89 YYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAM  168 (256)
T ss_dssp             EEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEE
T ss_pred             EEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCcccccEE
Confidence            999999976532   234667777654211                2234444445588999999999999877  6799


Q ss_pred             EEEeC--CEec----------------------------cCCCEEEEEeCCCCCCCcEEEEEEEEecc
Q psy16863        479 IWYKD--NKKI----------------------------KAGDIFALTANPKDPSSLGTYTCEAVNCM  516 (1075)
Q Consensus       479 ~W~~~--g~~l----------------------------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  516 (1075)
                      .|+|+  +..+                            .......|.|.++..+|+|.|+|.|.|..
T Consensus       169 ~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          169 SWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             EEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence            99986  3222                            01335569999999999999999999963

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.67  E-value=1.2e-16  Score=170.64  Aligned_cols=192  Identities=16%  Similarity=0.208  Sum_probs=111.7

Q ss_pred             cCCCCCEEEEEEEEeCCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEEC--CEec--
Q psy16863        315 VRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DRKL--  390 (1075)
Q Consensus       315 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~l--  390 (1075)
                      .+..|.+.|.|.|.|..|.......          +.+...+..+.+.+|++++|.|.+.+ +.+.|.|||.  +..+  
T Consensus         3 ~~~~~~~~y~~~~~~~~g~~~~~~~----------~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~   71 (270)
T 3qib_D            3 NERADLIAYLKQATKGGGGSGGGGG----------MKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKF   71 (270)
T ss_dssp             -----------------------------------CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEE
T ss_pred             chhhhHHHHHHHHhccCCccccccc----------eeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEE
Confidence            3467899999999998775443332          33445566788999999999999855 6789999992  2111  


Q ss_pred             ----------CCC---C-cEEEEE-cCCEEEEEEcccCCCCceeEEEEEEeCCC----ceeeEEEEEeecCC-CCCCCee
Q psy16863        391 ----------EEN---K-IYRTQH-DGNFYFIDLSSVSLFDSGRWTCLAENAVG----RSHCSCELSVLVPK-AYKAPFF  450 (1075)
Q Consensus       391 ----------~~~---~-~~~~~~-~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g----~~~~s~~l~V~~~~-~~~~p~~  450 (1075)
                                ...   . ++.+.. ......|.|.+++.+|+|.|.|.+.+..+    .......|.|.... ...+|.+
T Consensus        72 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v  151 (270)
T 3qib_D           72 LINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEV  151 (270)
T ss_dssp             EEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEE
T ss_pred             EEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCce
Confidence                      000   0 454443 33456799999999999999999997432    22234567776521 1123433


Q ss_pred             ee-ecce-EEecCCeEEEEEEEEC-CCCC-eEEEEeCCEeccCC----------------CEE----EEEeCCCCCCC-c
Q psy16863        451 TK-ELEA-ILTEQGTVSLECKVMG-IPTP-QLIWYKDNKKIKAG----------------DIF----ALTANPKDPSS-L  505 (1075)
Q Consensus       451 ~~-~~~~-~~~~g~~v~l~C~~~g-~p~~-~v~W~~~g~~l~~~----------------~~~----~l~i~~~~~~d-~  505 (1075)
                      .. .+.. .+..|+.++|.|.+.| .|.+ .++|+|||+++..+                ..+    .|.+.....+| .
T Consensus       152 ~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~  231 (270)
T 3qib_D          152 AVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPR  231 (270)
T ss_dssp             EEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTT
T ss_pred             EEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCC
Confidence            22 2222 2456899999999998 6766 89999999998542                222    34566555556 8


Q ss_pred             EEEEEEEEecce
Q psy16863        506 GTYTCEAVNCMG  517 (1075)
Q Consensus       506 G~Y~C~a~n~~g  517 (1075)
                      |.|+|.|.|...
T Consensus       232 g~YtC~v~~~~l  243 (270)
T 3qib_D          232 NHFRCQVQFYGL  243 (270)
T ss_dssp             CEEEEEEEECCB
T ss_pred             CeEEEEEEecCC
Confidence            999999999754

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.67  E-value=3.8e-16  Score=164.09  Aligned_cols=169  Identities=15%  Similarity=0.172  Sum_probs=114.1

Q ss_pred             CeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEE--------------CCEEeecC----CcEEEEEeeCcEEEEEEc
Q psy16863        749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFR--------------DDQQVVES----DNVKILKETLGVCHLKIH  810 (1075)
Q Consensus       749 p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k--------------~g~~i~~~----~~~~~~~~~~~~~~L~I~  810 (1075)
                      +.++..+..+.+.+|+++.|.| ..+.|.+.+.|||              ++..+...    .++.+.....+.+.|.|.
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~   81 (245)
T 4ei6_B            3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQ   81 (245)
T ss_dssp             CCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEEC
T ss_pred             cceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEEC
Confidence            3455566778899999999999 6678899999999              33333222    677766544557799999


Q ss_pred             cccCCCCeEEEEEEEeC----CceEEEEEEEEEEecC-CCCCCeee-eecc-eeecCCCeEEEEEEEEccCC-C-eeEEE
Q psy16863        811 ALEVADQAEWKCIATND----FGQSITSCFLKLNVPK-HYKKPKFL-EELK-AVLSEGGAVNLECKVIGVPQ-P-TLKWF  881 (1075)
Q Consensus       811 ~~~~~D~G~Y~C~A~N~----~G~~~~s~~l~V~~~~-~~~~p~~~-~~~~-~~~~~g~~~~L~C~v~g~p~-p-~v~W~  881 (1075)
                      +++.+|+|.|.|.|.|.    .+.......|.|.... ...+|.+. .... ..+.+|+.++|.|.+.|.++ + .|+|+
T Consensus        82 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~  161 (245)
T 4ei6_B           82 PTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW  161 (245)
T ss_dssp             SCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             CCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEE
Confidence            99999999999999963    2233334566776311 11234332 2222 12456999999999999544 4 89999


Q ss_pred             ECCEEcCCCC----------------eeE----EEECCCCcee-eEEEEEEEEeCCee
Q psy16863        882 KDGRELKAGD----------------IHK----IISGEDGTCC-LGIYTCEAHNCMGT  918 (1075)
Q Consensus       882 k~g~~l~~~~----------------~~~----i~~~~~~~~d-~G~Y~C~a~N~~G~  918 (1075)
                      |||.+|..+.                .+.    +.+......| .|.|+|.|.|....
T Consensus       162 ~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~  219 (245)
T 4ei6_B          162 VNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  219 (245)
T ss_dssp             ETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             ECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCC
Confidence            9999987531                122    2222222335 89999999997543

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.67  E-value=1e-15  Score=158.87  Aligned_cols=172  Identities=15%  Similarity=0.221  Sum_probs=113.9

Q ss_pred             ceeeeecCCeEEEEEEEecCC--CCeEEEEECC--E---Eee-------------cCCcEEEEEe-eCcEEEEEEccccC
Q psy16863        756 KSCQATVNEEFKFTVQVSISP--EPKVSWFRDD--Q---QVV-------------ESDNVKILKE-TLGVCHLKIHALEV  814 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g~p--~p~v~W~k~g--~---~i~-------------~~~~~~~~~~-~~~~~~L~I~~~~~  814 (1075)
                      ....+.+|++++|.|.+.+.|  .+.+.|||..  .   .+.             ...|+.+..+ ..+.+.|+|.+++.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (232)
T 1dn0_B            8 GAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTA   87 (232)
T ss_dssp             CCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCc
Confidence            345688999999999999875  6789999853  2   110             1356766544 23577999999999


Q ss_pred             CCCeEEEEEEE--eCCce----EEEEEEEEEEecCCCCCCeeee-ecceeecCC-CeEEEEEEEEcc-CCC-eeEEEE-C
Q psy16863        815 ADQAEWKCIAT--NDFGQ----SITSCFLKLNVPKHYKKPKFLE-ELKAVLSEG-GAVNLECKVIGV-PQP-TLKWFK-D  883 (1075)
Q Consensus       815 ~D~G~Y~C~A~--N~~G~----~~~s~~l~V~~~~~~~~p~~~~-~~~~~~~~g-~~~~L~C~v~g~-p~p-~v~W~k-~  883 (1075)
                      +|+|.|.|.+.  |..|.    ......|.|...+ ..+|.+.. .....+..| +.++|.|.+.|. |.| .|+|+| |
T Consensus        88 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~-~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~  166 (232)
T 1dn0_B           88 ADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGS-ASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKN  166 (232)
T ss_dssp             GGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSC-CBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             ccCEEEEEEEecCCcCCchhhhcccceEEEEccCC-CCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCC
Confidence            99999999999  42121    1123567776522 13344331 222234478 899999999987 776 999999 9


Q ss_pred             CEEcCC---------CCee----EEEECCCCc--eeeEEEEEEEEeCCeeEEEEEEEEEe
Q psy16863        884 GRELKA---------GDIH----KIISGEDGT--CCLGIYTCEAHNCMGTTSSSAALLGF  928 (1075)
Q Consensus       884 g~~l~~---------~~~~----~i~~~~~~~--~d~G~Y~C~a~N~~G~~~~~~~l~v~  928 (1075)
                      |..+..         +..+    .|.+.....  .|.|.|+|.|.|..|.......+.+.
T Consensus       167 g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~  226 (232)
T 1dn0_B          167 NSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVI  226 (232)
T ss_dssp             SCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC-
T ss_pred             CCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCC
Confidence            988743         1222    244444443  57899999999999988766665543

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.67  E-value=3.7e-16  Score=163.56  Aligned_cols=168  Identities=14%  Similarity=0.205  Sum_probs=112.5

Q ss_pred             eEEeccceeeeecCCeEEEEEEEecCCCCeEEEEE--------------CCEEeec---CCcEEEEEeeCcEEEEEEccc
Q psy16863        750 KFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFR--------------DDQQVVE---SDNVKILKETLGVCHLKIHAL  812 (1075)
Q Consensus       750 ~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k--------------~g~~i~~---~~~~~~~~~~~~~~~L~I~~~  812 (1075)
                      .+...+..+.+.+|+++.|.|.+.+ |.+.+.|||              ++.....   ..++.+.....+.+.|.|.++
T Consensus         4 ~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v   82 (240)
T 3q5y_A            4 GVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSAL   82 (240)
T ss_dssp             CCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSC
T ss_pred             ccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcC
Confidence            3445556778999999999999986 888999999              2222222   246776654455779999999


Q ss_pred             cCCCCeEEEEEEEeCCc---eEEEEEEEEEEec-CCCCCCeeee-ecce-eecCCCeEEEEEEEEc-cCCC-eeEEEECC
Q psy16863        813 EVADQAEWKCIATNDFG---QSITSCFLKLNVP-KHYKKPKFLE-ELKA-VLSEGGAVNLECKVIG-VPQP-TLKWFKDG  884 (1075)
Q Consensus       813 ~~~D~G~Y~C~A~N~~G---~~~~s~~l~V~~~-~~~~~p~~~~-~~~~-~~~~g~~~~L~C~v~g-~p~p-~v~W~k~g  884 (1075)
                      +.+|+|.|.|.|.+..+   .......|.|... ....+|.+.. .... .+.+|+.++|.|.+.| .|.| .|+|+|||
T Consensus        83 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g  162 (240)
T 3q5y_A           83 ELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNG  162 (240)
T ss_dssp             CGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred             ChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECC
Confidence            99999999999984322   2223456666631 1223444332 2221 2456899999999998 5556 78999999


Q ss_pred             EEcCCCCe------------eE----EEECCCCcee-eEEEEEEEEeCCee
Q psy16863        885 RELKAGDI------------HK----IISGEDGTCC-LGIYTCEAHNCMGT  918 (1075)
Q Consensus       885 ~~l~~~~~------------~~----i~~~~~~~~d-~G~Y~C~a~N~~G~  918 (1075)
                      .+|..+..            +.    |.+......| .|.|+|.|.|....
T Consensus       163 ~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~  213 (240)
T 3q5y_A          163 KEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLS  213 (240)
T ss_dssp             EEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             EECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            99865322            11    2332222345 67999999997654

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.67  E-value=1e-15  Score=157.09  Aligned_cols=174  Identities=15%  Similarity=0.197  Sum_probs=135.3

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCC--CcEEEEEcCCEEEEEEcccCCCCceeEEEEEE
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN--KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAE  425 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~--~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~  425 (1075)
                      .+|.| ..+.++.+.+|+.++|.|.+.|.|.+.|.|+|+|..+..+  .++.+...+....|.|.++..+|+|.|+|.|.
T Consensus        18 ~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~   96 (215)
T 3mtr_A           18 YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAV   96 (215)
T ss_dssp             EEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEE
T ss_pred             cCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEE
Confidence            36666 4566789999999999999999999999999999999766  56777777778889999999999999999999


Q ss_pred             eCCCceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEE----CCCCC--eEEEEeCCEeccCC---------
Q psy16863        426 NAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVM----GIPTP--QLIWYKDNKKIKAG---------  490 (1075)
Q Consensus       426 n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~----g~p~~--~v~W~~~g~~l~~~---------  490 (1075)
                      |..|....++.|.|..+|.  +|....    ....+..+.|.|...    +.|..  .+.|.+++...-..         
T Consensus        97 n~~g~~~~~~~l~v~~~P~--~p~~~~----~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~  170 (215)
T 3mtr_A           97 NRIGQESLEFILVQADTPS--SPSIDQ----VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS  170 (215)
T ss_dssp             CSSCEEEEEEEEEECCCCC--CCEEEE----EEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHH
T ss_pred             ECCCceEEEEEEEECCCCC--CCcceE----EEEecceEEEEEecCCccCCCceEEEEEEEEECCCCccccccccccccc
Confidence            9999998888888876653  232221    123467789999743    23333  57899887642111         


Q ss_pred             CEEEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEe
Q psy16863        491 DIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIAR  528 (1075)
Q Consensus       491 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~  528 (1075)
                      ....+.|..+...+.|.|+|.|.|..|....+..+.+.
T Consensus       171 ~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~  208 (215)
T 3mtr_A          171 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK  208 (215)
T ss_dssp             HHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEE
T ss_pred             ccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeE
Confidence            11468889999999999999999999988777666655

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.67  E-value=3.4e-16  Score=165.11  Aligned_cols=168  Identities=17%  Similarity=0.279  Sum_probs=122.0

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCC-----CcEEEEEECC--Eec------------CCCCcEEEEEcCCEEEEEE
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPT-----EIKIHWYRND--RKL------------EENKIYRTQHDGNFYFIDL  409 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p-----~~~v~W~k~g--~~l------------~~~~~~~~~~~g~~~~L~I  409 (1075)
                      .+.+...+..+.+.+|++++|.|.+.+.+     .+.|.|||++  ..+            ....++.+...+....|.|
T Consensus        34 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I  113 (252)
T 3bkj_L           34 DVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRI  113 (252)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred             ccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEE
Confidence            34455556778899999999999998877     6899999965  111            1135677766777778999


Q ss_pred             cccCCCCceeEEEEEEeCCCce-eeEEEEEeecCCCCCCCeeeee-cceEEecCCeEEEEEEEEC-CCCC-eEEEEeCCE
Q psy16863        410 SSVSLFDSGRWTCLAENAVGRS-HCSCELSVLVPKAYKAPFFTKE-LEAILTEQGTVSLECKVMG-IPTP-QLIWYKDNK  485 (1075)
Q Consensus       410 ~~v~~~d~G~Y~C~a~n~~g~~-~~s~~l~V~~~~~~~~p~~~~~-~~~~~~~g~~v~l~C~~~g-~p~~-~v~W~~~g~  485 (1075)
                      .+++.+|+|.|.|.|.|..+.. .....|.|....  .+|.+... ....+.+|+.++|.|.+.| .|.+ .|+|+|+|+
T Consensus       114 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~--~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~  191 (252)
T 3bkj_L          114 SRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRAD--AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGS  191 (252)
T ss_dssp             SSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCC--BCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             CCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCC--cCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCe
Confidence            9999999999999999876532 223456665432  23444432 2222346889999999998 4554 899999999


Q ss_pred             eccCC------------CE----EEEEeCCCCCCCcEEEEEEEEeccee
Q psy16863        486 KIKAG------------DI----FALTANPKDPSSLGTYTCEAVNCMGA  518 (1075)
Q Consensus       486 ~l~~~------------~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~  518 (1075)
                      ++..+            ..    ..|.|.....+|+|.|+|.|.|....
T Consensus       192 ~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  240 (252)
T 3bkj_L          192 ERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  240 (252)
T ss_dssp             EECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             ecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence            87544            11    24778778888999999999997654

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.66  E-value=1.6e-15  Score=162.69  Aligned_cols=185  Identities=13%  Similarity=0.213  Sum_probs=128.2

Q ss_pred             cccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCC-c------------------cccCCCeEEEee--C
Q psy16863        247 RRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD-H------------------PIFGNRFRAINR--D  305 (1075)
Q Consensus       247 ~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~-~------------------~~~~~~~~~~~~--~  305 (1075)
                      ..+....+.+|+.++|.|.+.+.+.        +...+.|++++. .                  .....++.+..+  +
T Consensus        31 ~~p~~~~v~~G~~v~L~C~~~g~~~--------~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~  102 (282)
T 1qok_A           31 QQSGAELVRSGTSVKLSCTASGFNI--------KDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSS  102 (282)
T ss_dssp             EECCCEEEETTCCEEEEEEEESSCG--------GGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTT
T ss_pred             ECCCCEEEeCCCeEEEEEeccCCCC--------CCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCC
Confidence            3455678899999999999864310        122344444221 0                  011356776653  4


Q ss_pred             CeEEEEEcccCCCCCEEEEEEEEeCCe---e--EEEEEEEEEecCC-----------CCCCeeeeecCceeeccCCeEEE
Q psy16863        306 GRTELNIRRVRRDDGGRYSVTASNESG---Y--STAKFELSVESQV-----------PDAPAFIRRLHDIAVKVGTRARL  369 (1075)
Q Consensus       306 ~~~~L~I~~~~~~d~G~Y~C~a~n~~g---~--~~~~~~l~V~~~~-----------~~~p~~~~~~~~~~v~~G~~v~l  369 (1075)
                      +..+|+|.+++.+|+|.|.|.|.|..|   .  ....+.|.|....           ..++.+...+....+.+|++++|
T Consensus       103 ~~~sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L  182 (282)
T 1qok_A          103 NTAYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTI  182 (282)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEE
T ss_pred             CeEEEEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEE
Confidence            567999999999999999999999865   1  2234567776522           12455666677888999999999


Q ss_pred             EEEEecCCCcEEEEEE--CCEecC------------CCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCce-eeE
Q psy16863        370 LVEIRSPTEIKIHWYR--NDRKLE------------ENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS-HCS  434 (1075)
Q Consensus       370 ~C~~~g~p~~~v~W~k--~g~~l~------------~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~-~~s  434 (1075)
                      .|.+.+.+ +.+.|||  +|..+.            ...++....++....|.|.++..+|+|.|+|.|.|..+.. ...
T Consensus       183 ~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~g  261 (282)
T 1qok_A          183 TCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAG  261 (282)
T ss_dssp             EEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCC
T ss_pred             EEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCC
Confidence            99998888 8999999  665441            2356666666677789999999999999999998854322 223


Q ss_pred             EEEEee
Q psy16863        435 CELSVL  440 (1075)
Q Consensus       435 ~~l~V~  440 (1075)
                      ..|.|.
T Consensus       262 t~l~V~  267 (282)
T 1qok_A          262 TKLELK  267 (282)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            456664

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.66  E-value=1.6e-15  Score=160.78  Aligned_cols=167  Identities=14%  Similarity=0.222  Sum_probs=122.8

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCC------CcEEEEEEC--CEecC------------CCCcEEEEEcCCEEEEE
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPT------EIKIHWYRN--DRKLE------------ENKIYRTQHDGNFYFID  408 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p------~~~v~W~k~--g~~l~------------~~~~~~~~~~g~~~~L~  408 (1075)
                      .+.+...+..+.+.+|++++|.|.+.+.+      .+.|.|||+  |..+.            ...++.+..++....|.
T Consensus         5 ~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~   84 (264)
T 2gjj_A            5 DIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLT   84 (264)
T ss_dssp             CCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred             ccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEE
Confidence            45566677788999999999999998876      689999995  32211            13567766666777899


Q ss_pred             EcccCCCCceeEEEEEEeCCCce-eeEEEEEeecCCC---------------CCCCeeeeecceEEecCCeEEEEEEEEC
Q psy16863        409 LSSVSLFDSGRWTCLAENAVGRS-HCSCELSVLVPKA---------------YKAPFFTKELEAILTEQGTVSLECKVMG  472 (1075)
Q Consensus       409 I~~v~~~d~G~Y~C~a~n~~g~~-~~s~~l~V~~~~~---------------~~~p~~~~~~~~~~~~g~~v~l~C~~~g  472 (1075)
                      |.+++.+|+|.|.|.+.|..+.. ...+.|.|..++.               ...+.+.......+.+|++++|.|.+.+
T Consensus        85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~  164 (264)
T 2gjj_A           85 IGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASG  164 (264)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEES
T ss_pred             ECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeC
Confidence            99999999999999999875532 2345788876541               0112233333446889999999999998


Q ss_pred             CCC--CeEEEEeCC--Ee---cc-------------------------CCCEEEEEeCCCCCCCcEEEEEEEEec
Q psy16863        473 IPT--PQLIWYKDN--KK---IK-------------------------AGDIFALTANPKDPSSLGTYTCEAVNC  515 (1075)
Q Consensus       473 ~p~--~~v~W~~~g--~~---l~-------------------------~~~~~~l~i~~~~~~d~G~Y~C~a~n~  515 (1075)
                      .|.  +.+.|+|+.  +.   +.                         ......|.|..+..+|+|.|.|.|.|.
T Consensus       165 ~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          165 YSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             SCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             CccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            874  799999963  21   10                         112457999999999999999999995

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.66  E-value=3.5e-16  Score=164.50  Aligned_cols=168  Identities=17%  Similarity=0.234  Sum_probs=119.2

Q ss_pred             eeeeecCceeeccCCeEEEEEEEecCCCcEEEEEE----------------CCEecCCC---CcEEEEE-cCCEEEEEEc
Q psy16863        351 AFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYR----------------NDRKLEEN---KIYRTQH-DGNFYFIDLS  410 (1075)
Q Consensus       351 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k----------------~g~~l~~~---~~~~~~~-~g~~~~L~I~  410 (1075)
                      .+...+..+.+.+|++++|.|.+.+.+.+.|.|||                ++..+...   .++.+.. .+....|.|.
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~   82 (246)
T 4dzb_B            3 VVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVT   82 (246)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEEC
T ss_pred             ccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEEC
Confidence            34556677889999999999999998999999999                44333322   4666554 3456789999


Q ss_pred             ccCCCCceeEEEEEEeCCCc----eeeEEEEEeecCC-CCCCCeee-eecc-eEEecCCeEEEEEEEECCCCC--eEEEE
Q psy16863        411 SVSLFDSGRWTCLAENAVGR----SHCSCELSVLVPK-AYKAPFFT-KELE-AILTEQGTVSLECKVMGIPTP--QLIWY  481 (1075)
Q Consensus       411 ~v~~~d~G~Y~C~a~n~~g~----~~~s~~l~V~~~~-~~~~p~~~-~~~~-~~~~~g~~v~l~C~~~g~p~~--~v~W~  481 (1075)
                      +++.+|+|.|.|.+.|..+.    ......|.|.... ...+|.+. ..+. ..+.+|+.++|.|.+.|.|++  .++|+
T Consensus        83 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~  162 (246)
T 4dzb_B           83 SAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW  162 (246)
T ss_dssp             SCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             CCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEE
Confidence            99999999999999986541    2234566666421 11233332 2222 225569999999999987654  89999


Q ss_pred             eCCEeccCC----------------CEE----EEEeCCCCCCC-cEEEEEEEEeccee
Q psy16863        482 KDNKKIKAG----------------DIF----ALTANPKDPSS-LGTYTCEAVNCMGA  518 (1075)
Q Consensus       482 ~~g~~l~~~----------------~~~----~l~i~~~~~~d-~G~Y~C~a~n~~g~  518 (1075)
                      |||..+..+                ..+    .|.+...+.+| .|.|+|.|.|....
T Consensus       163 k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~  220 (246)
T 4dzb_B          163 VNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  220 (246)
T ss_dssp             ETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             ECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCC
Confidence            999988642                222    26677666677 99999999997543

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.66  E-value=2.4e-16  Score=163.27  Aligned_cols=166  Identities=20%  Similarity=0.299  Sum_probs=111.3

Q ss_pred             ceeeeecCCeEEEEEEEecCCC----CeEEEEEC--CEEe---e-------------cCCcEEEEEee-CcEEEEEEccc
Q psy16863        756 KSCQATVNEEFKFTVQVSISPE----PKVSWFRD--DQQV---V-------------ESDNVKILKET-LGVCHLKIHAL  812 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g~p~----p~v~W~k~--g~~i---~-------------~~~~~~~~~~~-~~~~~L~I~~~  812 (1075)
                      ....+.+|++++|.|.+.+.|.    +.+.|||+  |..+   .             ...|+.+..+. .+...|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   87 (228)
T 3bae_H            8 GPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSV   87 (228)
T ss_dssp             CCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSC
T ss_pred             CceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCC
Confidence            4456889999999999998875    89999985  2221   1             12466665432 24679999999


Q ss_pred             cCCCCeEEEEEEEeCCc------eE-E--EEEEEEEEecCCCCCCeeee-ecceeecCCCeEEEEEEEEcc-CCC-eeEE
Q psy16863        813 EVADQAEWKCIATNDFG------QS-I--TSCFLKLNVPKHYKKPKFLE-ELKAVLSEGGAVNLECKVIGV-PQP-TLKW  880 (1075)
Q Consensus       813 ~~~D~G~Y~C~A~N~~G------~~-~--~s~~l~V~~~~~~~~p~~~~-~~~~~~~~g~~~~L~C~v~g~-p~p-~v~W  880 (1075)
                      +.+|+|.|.|.|.|..|      .. .  ..+.|.|...+ ..+|.+.. .....+.+|+.++|.|.+.|. |.| .|+|
T Consensus        88 ~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~-~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~W  166 (228)
T 3bae_H           88 DTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAK-TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTW  166 (228)
T ss_dssp             CGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCC-CBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEEE
T ss_pred             CcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCC-CCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEEE
Confidence            99999999999999865      21 1  23567776321 23444332 222235689999999999987 877 9999


Q ss_pred             EECCEEcCC--------CCee----EEEECCCCceeeEEEEEEEEeCCeeEEEEE
Q psy16863        881 FKDGRELKA--------GDIH----KIISGEDGTCCLGIYTCEAHNCMGTTSSSA  923 (1075)
Q Consensus       881 ~k~g~~l~~--------~~~~----~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~  923 (1075)
                      +|+|..+..        +..+    .|.+......| |.|+|.|.|..|......
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~  220 (228)
T 3bae_H          167 NSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDK  220 (228)
T ss_dssp             GGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             eeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEE
Confidence            999875421        1111    23333333334 999999999999865443

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.66  E-value=2e-15  Score=159.66  Aligned_cols=193  Identities=12%  Similarity=0.169  Sum_probs=130.0

Q ss_pred             ccceeeccceeEEEEEecCC----CceEEEEe-cCCCeeeEEec--CCCc----cccCCCeEEEee--CCeEEEEEcccC
Q psy16863        250 HDIAVKVGTRARLLVEIRSP----TEIKCQFD-LNNTIPFSFRA--QGDH----PIFGNRFRAINR--DGRTELNIRRVR  316 (1075)
Q Consensus       250 ~~~~v~~g~~~~l~c~~~~~----~~~~c~~~-~~~~~~~~w~~--~~~~----~~~~~~~~~~~~--~~~~~L~I~~~~  316 (1075)
                      ....+.+|+.++|.|.+.+.    ..+.|.-. .+....+..+.  .+..    .....++.+..+  .+..+|+|.+++
T Consensus        10 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   89 (256)
T 3umt_A           10 GLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLT   89 (256)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCC
Confidence            44568899999999998752    22322211 11222222111  1110    112456776654  456789999999


Q ss_pred             CCCCEEEEEEEEeC----CeeEEEEEEEEEecC------------CCCCCeeeeecCceeeccCCeEEEEEEEecCCCcE
Q psy16863        317 RDDGGRYSVTASNE----SGYSTAKFELSVESQ------------VPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIK  380 (1075)
Q Consensus       317 ~~d~G~Y~C~a~n~----~g~~~~~~~l~V~~~------------~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~  380 (1075)
                      .+|+|.|.|.|.|.    .+.....+.|.|...            ...+|.+...+....+.+|++++|.|.+.+.+.+.
T Consensus        90 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~  169 (256)
T 3umt_A           90 SEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGSN  169 (256)
T ss_dssp             GGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTTC
T ss_pred             cccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCcE
Confidence            99999999999987    444445567777641            11267777778888999999999999999988889


Q ss_pred             EEEEEC--CEecC------------CCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCce-eeEEEEEeecC
Q psy16863        381 IHWYRN--DRKLE------------ENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS-HCSCELSVLVP  442 (1075)
Q Consensus       381 v~W~k~--g~~l~------------~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~-~~s~~l~V~~~  442 (1075)
                      +.|||+  +..+.            ...++.....+....|.|.+++.+|+|.|+|.|.|..+.. .....|.|...
T Consensus       170 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~  246 (256)
T 3umt_A          170 LNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKRA  246 (256)
T ss_dssp             EEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC--
T ss_pred             EEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEECC
Confidence            999994  22211            1356777777778889999999999999999999864332 22456666644

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.66  E-value=8.4e-16  Score=160.83  Aligned_cols=176  Identities=15%  Similarity=0.169  Sum_probs=117.6

Q ss_pred             eEEeccceeeeecCCeEEEEEEEecC--CCCeEEEEECC--EE---ee--------------cCCcEEEEEeeC-cEEEE
Q psy16863        750 KFIEGLKSCQATVNEEFKFTVQVSIS--PEPKVSWFRDD--QQ---VV--------------ESDNVKILKETL-GVCHL  807 (1075)
Q Consensus       750 ~~~~~~~~~~~~~g~~~~l~C~v~g~--p~p~v~W~k~g--~~---i~--------------~~~~~~~~~~~~-~~~~L  807 (1075)
                      .+...+..+.+.+|++++|.|.+.+.  +.+.+.|||+.  ..   +.              ...|+.+..+.. +.+.|
T Consensus         3 ~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   82 (242)
T 1hxm_B            3 HLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTL   82 (242)
T ss_dssp             EEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEE
T ss_pred             ccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEE
Confidence            34445566779999999999999985  67899999953  21   11              235666654332 57899


Q ss_pred             EEccccCCCCeEEEEEEEeCCc-----eEE--EEEEEEEEecCC----CCCCeeeeecceeecCCCeEEEEEEEEcc-CC
Q psy16863        808 KIHALEVADQAEWKCIATNDFG-----QSI--TSCFLKLNVPKH----YKKPKFLEELKAVLSEGGAVNLECKVIGV-PQ  875 (1075)
Q Consensus       808 ~I~~~~~~D~G~Y~C~A~N~~G-----~~~--~s~~l~V~~~~~----~~~p~~~~~~~~~~~~g~~~~L~C~v~g~-p~  875 (1075)
                      .|.+++.+|+|.|.|.+.|..+     ...  ....|.|...+.    ...|.+..+....+.+|+.++|.|.+.|. |.
T Consensus        83 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~  162 (242)
T 1hxm_B           83 TIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPD  162 (242)
T ss_dssp             EECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSC
T ss_pred             EECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECC
Confidence            9999999999999999998631     111  235777775321    01122222222235679999999999987 64


Q ss_pred             -CeeEEEECCE-EcCCC---------Cee----EEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEE
Q psy16863        876 -PTLKWFKDGR-ELKAG---------DIH----KIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLG  927 (1075)
Q Consensus       876 -p~v~W~k~g~-~l~~~---------~~~----~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v  927 (1075)
                       +.|+|+|+|. ++..+         ..+    .|.+..... + |.|+|.|.|..|.......+.+
T Consensus       163 ~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~  227 (242)
T 1hxm_B          163 VIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF  227 (242)
T ss_dssp             CEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred             CeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence             7899999987 56322         111    344433332 4 9999999999987655555544

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.66  E-value=2.2e-14  Score=141.65  Aligned_cols=236  Identities=16%  Similarity=0.253  Sum_probs=160.5

Q ss_pred             eecCceeeccCCeEEEEEEEec-CC---CcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCC
Q psy16863        354 RRLHDIAVKVGTRARLLVEIRS-PT---EIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG  429 (1075)
Q Consensus       354 ~~~~~~~v~~G~~v~l~C~~~g-~p---~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g  429 (1075)
                      ..|....+..|+.++|.|.+.| .|   +..++|+|||..+....          ..|.|..+...|+|.|+|++.+..|
T Consensus         7 ~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGaT----------~tLti~s~t~sdSG~YqCvVTDa~G   76 (304)
T 3shs_A            7 IQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT----------ATLTVADATSENAGSYKVTVQDTDT   76 (304)
T ss_dssp             EEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCCS----------SEEEESSCCGGGCEEEEEEEEETTT
T ss_pred             eCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCCc----------ceEEeeeccccCCeEEEEEEEECCC
Confidence            3456778899999999999854 55   56999999998876432          1478899999999999999999988


Q ss_pred             ceeeEEEEEeecCCCCCCCeee-eecce-EEecCCeEEEEEEE--E-CCC-----CCeEEEEeCCEeccCCCEEEEEeCC
Q psy16863        430 RSHCSCELSVLVPKAYKAPFFT-KELEA-ILTEQGTVSLECKV--M-GIP-----TPQLIWYKDNKKIKAGDIFALTANP  499 (1075)
Q Consensus       430 ~~~~s~~l~V~~~~~~~~p~~~-~~~~~-~~~~g~~v~l~C~~--~-g~p-----~~~v~W~~~g~~l~~~~~~~l~i~~  499 (1075)
                      ....+..+.|.....+   .+. ..+.. .+..|..+.|.+.+  . |.|     ..+|+|+||+..+....  .|++..
T Consensus        77 cs~tSs~VtVT~~a~l---~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~IsgAq--~lT~sS  151 (304)
T 3shs_A           77 MTSVESEVFLMEEAEL---IVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQ--DITIQE  151 (304)
T ss_dssp             CCEEECCCEEECBCCE---EEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEESSS--EEEECS
T ss_pred             CeeeeeeEEEeccCce---eEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccCcc--ccceee
Confidence            8776666666654321   111 11222 24567789999988  4 344     46999999999996544  566677


Q ss_pred             CCCCCcEEEEEEEEecceeeEEE--EEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEec-
Q psy16863        500 KDPSSLGTYTCEAVNCMGAAFST--SRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLV-  576 (1075)
Q Consensus       500 ~~~~d~G~Y~C~a~n~~g~~~~~--~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~-  576 (1075)
                      ....++|.|+|++.|..+....+  ..+.+..                    .++-..-.....+..|+.+.|.-.++. 
T Consensus       152 ~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~--------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~  211 (304)
T 3shs_A          152 FTADKNGVYTVKVWGESEDSAASASTKIMLAT--------------------MNVDQDVVESKTVALGNEISLNYVVSED  211 (304)
T ss_dssp             CCGGGCEEEEEEEESSSGGGCEEEEEEEEECE--------------------EEEEECCCSEEEEETTSCEEECCEEEEE
T ss_pred             EEecCCeEEEEEEEcCCCCcccccceEEEEEc--------------------cccchhheEeehhhcCcEEEEEEEEeec
Confidence            78889999999999987743333  3333321                    111112234566888999988876642 


Q ss_pred             ---C--CCC---ceEEEEeCC-eEE----e------cCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEE
Q psy16863        577 ---P--PWP---RSIYWYNKE-GVV----E------ASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVAT  628 (1075)
Q Consensus       577 ---~--p~p---~~v~W~~~~-~~i----~------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  628 (1075)
                         .  ..|   ..+.||... +.+    .      .-+.+.+..+|    .|.-..+..+|...|-|+|.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  278 (304)
T 3shs_A          212 IVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDG----HLFKESATYDDTAKFWCVAK  278 (304)
T ss_dssp             CCSCCTTCCEEEEEEEEEEECTTCCSCEEEESSSEECGGGEEECTTS----CEEESSCCGGGCEEEEEEEE
T ss_pred             cccCCCCCCceEEEEEEEEeecCccCchhhhhhhhhhhccceeCCCc----ceeecccccccchheeeHHH
Confidence               1  112   267898532 111    1      11345555555    56667888999999999986

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.66  E-value=1.4e-15  Score=160.81  Aligned_cols=168  Identities=16%  Similarity=0.269  Sum_probs=119.0

Q ss_pred             CeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECC--Eec-------------CCCCcEEEE--EcCCEEEEEEccc
Q psy16863        350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRND--RKL-------------EENKIYRTQ--HDGNFYFIDLSSV  412 (1075)
Q Consensus       350 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g--~~l-------------~~~~~~~~~--~~g~~~~L~I~~v  412 (1075)
                      ..+...+..+.+.+|++++|.|.+.+.|.+.+.|||..  ..+             ....++.+.  .......|.|.++
T Consensus         4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   83 (256)
T 3tf7_C            4 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASV   83 (256)
T ss_dssp             CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSC
T ss_pred             cEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCC
Confidence            34555667788999999999999999899999999832  111             112344442  3455678999999


Q ss_pred             CCCCceeEEEEEEeCCCce----eeEEEEEeecC---------------CCCCCCeeeeecce-EEecCCeEEEEEEEEC
Q psy16863        413 SLFDSGRWTCLAENAVGRS----HCSCELSVLVP---------------KAYKAPFFTKELEA-ILTEQGTVSLECKVMG  472 (1075)
Q Consensus       413 ~~~d~G~Y~C~a~n~~g~~----~~s~~l~V~~~---------------~~~~~p~~~~~~~~-~~~~g~~v~l~C~~~g  472 (1075)
                      +.+|+|.|.|.|.|..+..    .....|.|...               ....+|.+...+.. .+.+|++++|.|.+.+
T Consensus        84 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~  163 (256)
T 3tf7_C           84 HRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTN  163 (256)
T ss_dssp             CGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECS
T ss_pred             CcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCC
Confidence            9999999999999976522    22346666641               01233455554444 3679999999999988


Q ss_pred             CCCCeEEEEeCC--Eec---c----------------------CCCEEEEEeCCCCCCCcEEEEEEEEeccee
Q psy16863        473 IPTPQLIWYKDN--KKI---K----------------------AGDIFALTANPKDPSSLGTYTCEAVNCMGA  518 (1075)
Q Consensus       473 ~p~~~v~W~~~g--~~l---~----------------------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  518 (1075)
                      . .+.+.|+|..  ..+   .                      ......|.|.++..+|+|.|+|.|.|..|.
T Consensus       164 ~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~  235 (256)
T 3tf7_C          164 S-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQ  235 (256)
T ss_dssp             C-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTE
T ss_pred             C-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCc
Confidence            6 6799999832  111   0                      123457999999999999999999998664

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.66  E-value=9.1e-16  Score=163.42  Aligned_cols=168  Identities=17%  Similarity=0.248  Sum_probs=116.0

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCC-----CCeEEEEECC--EE---ee---------cCCcEEEEEeeCcEEEE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISP-----EPKVSWFRDD--QQ---VV---------ESDNVKILKETLGVCHL  807 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p-----~p~v~W~k~g--~~---i~---------~~~~~~~~~~~~~~~~L  807 (1075)
                      ..+.+...+....+.+|++++|.|.+.+.|     .+.+.|||++  ..   +.         ...++.+.. ..+...|
T Consensus        14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~-~~~~~~L   92 (268)
T 1x9q_A           14 SDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSG-SGTDFTL   92 (268)
T ss_dssp             CCCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-ETTEEEE
T ss_pred             ccceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEc-CCCEEEE
Confidence            456677777788899999999999999887     5899999853  21   21         135666654 4457799


Q ss_pred             EEccccCCCCeEEEEEEEeCCceEE-EEEEEEEEecCCCCC----C---------------eeeeecceeecCCCeEEEE
Q psy16863        808 KIHALEVADQAEWKCIATNDFGQSI-TSCFLKLNVPKHYKK----P---------------KFLEELKAVLSEGGAVNLE  867 (1075)
Q Consensus       808 ~I~~~~~~D~G~Y~C~A~N~~G~~~-~s~~l~V~~~~~~~~----p---------------~~~~~~~~~~~~g~~~~L~  867 (1075)
                      +|.+++.+|+|.|.|.|.|..+... ....|.|..++....    |               .+..+....+.+|++++|.
T Consensus        93 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~  172 (268)
T 1x9q_A           93 KINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLS  172 (268)
T ss_dssp             EESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEE
T ss_pred             EECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEE
Confidence            9999999999999999999865322 245677765432111    1               1122223457899999999


Q ss_pred             EEEEccCC--CeeEEEEC--CEEc--------------------CCC----------CeeEEEECCCCceeeEEEEEEEE
Q psy16863        868 CKVIGVPQ--PTLKWFKD--GREL--------------------KAG----------DIHKIISGEDGTCCLGIYTCEAH  913 (1075)
Q Consensus       868 C~v~g~p~--p~v~W~k~--g~~l--------------------~~~----------~~~~i~~~~~~~~d~G~Y~C~a~  913 (1075)
                      |.+.|.|.  +.+.|||+  |..+                    ..+          ....|.+......|+|.|+|.|.
T Consensus       173 C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~  252 (268)
T 1x9q_A          173 CVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGA  252 (268)
T ss_dssp             EEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEc
Confidence            99998874  78999985  3221                    001          12457777888899999999999


Q ss_pred             eC
Q psy16863        914 NC  915 (1075)
Q Consensus       914 N~  915 (1075)
                      |.
T Consensus       253 ~~  254 (268)
T 1x9q_A          253 SY  254 (268)
T ss_dssp             ET
T ss_pred             cC
Confidence            85

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.66  E-value=2.6e-16  Score=167.89  Aligned_cols=170  Identities=16%  Similarity=0.168  Sum_probs=114.2

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEE--CCE------------EeecC----CcEEEEEeeCcEEEEEE
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFR--DDQ------------QVVES----DNVKILKETLGVCHLKI  809 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k--~g~------------~i~~~----~~~~~~~~~~~~~~L~I  809 (1075)
                      .+.+...+....+.+|++++|.|.+. .|.+.+.|||  .+.            .....    .++.+.....+.+.|.|
T Consensus        26 ~~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I  104 (268)
T 3pl6_D           26 GAGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKI  104 (268)
T ss_dssp             -SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEE
T ss_pred             CceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEE
Confidence            44555666778899999999999987 6888999999  222            11111    56666544445678999


Q ss_pred             ccccCCCCeEEEEEEEeC--CceEEEEEEEEEEecC-CCCCCeee-eecc-eeecCCCeEEEEEEEEccCCC--eeEEEE
Q psy16863        810 HALEVADQAEWKCIATND--FGQSITSCFLKLNVPK-HYKKPKFL-EELK-AVLSEGGAVNLECKVIGVPQP--TLKWFK  882 (1075)
Q Consensus       810 ~~~~~~D~G~Y~C~A~N~--~G~~~~s~~l~V~~~~-~~~~p~~~-~~~~-~~~~~g~~~~L~C~v~g~p~p--~v~W~k  882 (1075)
                      .+++.+|+|.|.|.|.|.  .+.......|.|.... ...+|.+. .... ..+.+|+.++|.|.+.|.|++  .|+|+|
T Consensus       105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~  184 (268)
T 3pl6_D          105 QRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV  184 (268)
T ss_dssp             CSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             CCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEE
Confidence            999999999999999984  3333334567776421 22244432 2222 124568999999999997665  899999


Q ss_pred             CCEEcCCC----------------CeeEE----EECCCCcee-eEEEEEEEEeCCee
Q psy16863        883 DGRELKAG----------------DIHKI----ISGEDGTCC-LGIYTCEAHNCMGT  918 (1075)
Q Consensus       883 ~g~~l~~~----------------~~~~i----~~~~~~~~d-~G~Y~C~a~N~~G~  918 (1075)
                      ||.++..+                ..+.+    .+......| .|.|+|.|.|....
T Consensus       185 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~  241 (268)
T 3pl6_D          185 NGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  241 (268)
T ss_dssp             SSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             CCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence            99988643                11221    222222234 89999999997543

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.65  E-value=5.5e-16  Score=158.48  Aligned_cols=175  Identities=11%  Similarity=0.091  Sum_probs=118.2

Q ss_pred             cccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCC--------------Ccc----ccCCCeEEEee--CCeE
Q psy16863        249 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG--------------DHP----IFGNRFRAINR--DGRT  308 (1075)
Q Consensus       249 ~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~--------------~~~----~~~~~~~~~~~--~~~~  308 (1075)
                      +....+.+|+.++|.|.+.+.+.        +...+.|++++              +..    ....++.+..+  ++..
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~--------~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   78 (210)
T 3d9a_H            7 SGPSLVKPSQTLSLTCSVTGDSI--------TSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQY   78 (210)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCG--------GGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEE
T ss_pred             CCCEEecCCCcEEEEEEEecccC--------CCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEE
Confidence            45567899999999999875320        11233444321              110    01456776653  3467


Q ss_pred             EEEEcccCCCCCEEEEEEEEeCCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecC-CCc-EEEEEEC
Q psy16863        309 ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSP-TEI-KIHWYRN  386 (1075)
Q Consensus       309 ~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p~~-~v~W~k~  386 (1075)
                      +|+|.+++.+|+|.|.|.|.|.. .....+.|.|....+.+|.+........+.+|+.++|.|.+.|. |.+ .|+|+|+
T Consensus        79 ~L~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  157 (210)
T 3d9a_H           79 YLDLNSVTTEDTATYYCANWDGD-YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSG  157 (210)
T ss_dssp             EEEECSCCGGGCEEEEEEETTSS-CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             EEEECCCCcccCEEEEEEEecCc-ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeC
Confidence            99999999999999999999853 12223567776544456776655545567899999999999886 777 9999999


Q ss_pred             CEecCCCCcEEEEEcCC---EEEEEEcccCCCCceeEEEEEEeCCCceee
Q psy16863        387 DRKLEENKIYRTQHDGN---FYFIDLSSVSLFDSGRWTCLAENAVGRSHC  433 (1075)
Q Consensus       387 g~~l~~~~~~~~~~~g~---~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~  433 (1075)
                      |..+.......+..++.   ...|.|..+..+| |.|+|.|.|..|....
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~  206 (210)
T 3d9a_H          158 SLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKV  206 (210)
T ss_dssp             TBCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEE
T ss_pred             CcccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccc
Confidence            98653111111112232   2358899988877 9999999999887653

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.65  E-value=4.7e-15  Score=152.91  Aligned_cols=166  Identities=17%  Similarity=0.236  Sum_probs=117.8

Q ss_pred             cCceeeccCCeEEEEEEEecCC--CcEEEEEECC--Ee---c----C----------CCCcEEEEEc--CCEEEEEEccc
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPT--EIKIHWYRND--RK---L----E----------ENKIYRTQHD--GNFYFIDLSSV  412 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~g--~~---l----~----------~~~~~~~~~~--g~~~~L~I~~v  412 (1075)
                      +..+.+.+|++++|.|.+.+.+  .+.+.|||++  ..   +    .          ...|+.+..+  .....|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (223)
T 1dee_B            7 SGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSL   86 (223)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCC
Confidence            3577899999999999998765  4789999953  11   1    0          1246666553  34678999999


Q ss_pred             CCCCceeEEEEEEeCCC----c--eeeEEEEEeecCCCCCCCeee-eecceEEecCCeEEEEEEEECC-CCC-eEEEEe-
Q psy16863        413 SLFDSGRWTCLAENAVG----R--SHCSCELSVLVPKAYKAPFFT-KELEAILTEQGTVSLECKVMGI-PTP-QLIWYK-  482 (1075)
Q Consensus       413 ~~~d~G~Y~C~a~n~~g----~--~~~s~~l~V~~~~~~~~p~~~-~~~~~~~~~g~~v~l~C~~~g~-p~~-~v~W~~-  482 (1075)
                      +.+|+|.|.|.+.|..|    .  ......|.|...+. .+|.+. ..+...+.+|+.++|.|.+.|. |.+ .++|++ 
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~-~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  165 (223)
T 1dee_B           87 RAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSA-SAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYK  165 (223)
T ss_dssp             CGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCC-BCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             CHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCC-CCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEcc
Confidence            99999999999998753    1  11234677764221 234433 2223335689999999999986 777 999999 


Q ss_pred             CCEeccC---------CCEE----EEEeCCCCC--CCcEEEEEEEEecceeeEEE
Q psy16863        483 DNKKIKA---------GDIF----ALTANPKDP--SSLGTYTCEAVNCMGAAFST  522 (1075)
Q Consensus       483 ~g~~l~~---------~~~~----~l~i~~~~~--~d~G~Y~C~a~n~~g~~~~~  522 (1075)
                      ||..+..         +..+    .|.|.....  +|.|.|+|.|.|..|.....
T Consensus       166 ~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~  220 (223)
T 1dee_B          166 NNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKD  220 (223)
T ss_dssp             TSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEE
T ss_pred             CCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCccc
Confidence            9988743         1222    466766665  78899999999998876543

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.65  E-value=9.9e-16  Score=158.40  Aligned_cols=171  Identities=20%  Similarity=0.227  Sum_probs=116.2

Q ss_pred             cCceeeccCCeEEEEEEEecCC--CcEEEEEECC--Ee---c---C-----------CCCcEEEEEc--CCEEEEEEccc
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPT--EIKIHWYRND--RK---L---E-----------ENKIYRTQHD--GNFYFIDLSSV  412 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~g--~~---l---~-----------~~~~~~~~~~--g~~~~L~I~~v  412 (1075)
                      +..+.+.+|++++|.|.+.+.+  .+.|.|||++  ..   +   .           -..|+.+..+  +....|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (227)
T 1mju_H            7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL   86 (227)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCC
Confidence            4566789999999999998876  6899999964  21   1   1           1346666543  35678999999


Q ss_pred             CCCCceeEEEEEEeCCCce-eeEEEEEeecCCCCCCCeee-eecceEEecCCeEEEEEEEECC-CCC-eEEEEeCCEecc
Q psy16863        413 SLFDSGRWTCLAENAVGRS-HCSCELSVLVPKAYKAPFFT-KELEAILTEQGTVSLECKVMGI-PTP-QLIWYKDNKKIK  488 (1075)
Q Consensus       413 ~~~d~G~Y~C~a~n~~g~~-~~s~~l~V~~~~~~~~p~~~-~~~~~~~~~g~~v~l~C~~~g~-p~~-~v~W~~~g~~l~  488 (1075)
                      +.+|+|.|.|.+.|..+.. .....|.|...+. .+|.+. ..+...+.+|+.++|.|.+.|. |.+ .|+|++++..+.
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~-~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~  165 (227)
T 1mju_H           87 TSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKT-TAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSG  165 (227)
T ss_dssp             CGGGCEEEEEEEEETTEEEECCCEEEEECSSCC-BCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCTT
T ss_pred             CcccCEEEEEEECCCCceEEcCcEEEEEcCCCC-CCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCC
Confidence            9999999999999864221 1235677765321 233333 2223335679999999999985 777 999999998652


Q ss_pred             C--------CCE----EEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEEe
Q psy16863        489 A--------GDI----FALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIAR  528 (1075)
Q Consensus       489 ~--------~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v~  528 (1075)
                      .        +..    ..|.|.....+| |.|+|.|.|..+.......+.+.
T Consensus       166 ~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~  216 (227)
T 1mju_H          166 VHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPR  216 (227)
T ss_dssp             EEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             cEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCC
Confidence            1        122    257888888777 99999999988776555554443

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.65  E-value=2.5e-15  Score=154.55  Aligned_cols=164  Identities=16%  Similarity=0.208  Sum_probs=119.6

Q ss_pred             cCceeeccCCeEEEEEEEecCC--CcEEEEEECC--Ee---cC--------------CCCcEEEEEc--CCEEEEEEccc
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPT--EIKIHWYRND--RK---LE--------------ENKIYRTQHD--GNFYFIDLSSV  412 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~g--~~---l~--------------~~~~~~~~~~--g~~~~L~I~~v  412 (1075)
                      +..+.+.+|++++|.|.+.+.+  .+.|.|||..  ..   +.              ...|+.+..+  +....|+|.++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (220)
T 2fbj_H            7 SGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKV   86 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSC
T ss_pred             CCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCC
Confidence            4567899999999999998765  6799999853  11   10              1256666654  45678999999


Q ss_pred             CCCCceeEEEEEEeCCCc---eeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECC-CC--CeEEEEeCCEe
Q psy16863        413 SLFDSGRWTCLAENAVGR---SHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGI-PT--PQLIWYKDNKK  486 (1075)
Q Consensus       413 ~~~d~G~Y~C~a~n~~g~---~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~-p~--~~v~W~~~g~~  486 (1075)
                      +.+|+|.|.|.+.|..+.   ......|.|...+. .+|.+.......+.+|+.++|.|.+.+. |.  +.|+|++++..
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~-~~P~v~~~~~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~  165 (220)
T 2fbj_H           87 RSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESA-RNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKD  165 (220)
T ss_dssp             CGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCC-BCCEEEEECCCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSS
T ss_pred             ChhhCEEEEEEEeccccccceecCCEEEEecCCCC-CCCEEEEeecccccCCCcEEEEEEEEeEECCCcEEEEEecCCEe
Confidence            999999999999997553   22345677775432 3444443322335689999999999986 76  69999999976


Q ss_pred             cc---------CCCEE----EEEeCCCCCCCcEEEEEEEEecceeeE
Q psy16863        487 IK---------AGDIF----ALTANPKDPSSLGTYTCEAVNCMGAAF  520 (1075)
Q Consensus       487 l~---------~~~~~----~l~i~~~~~~d~G~Y~C~a~n~~g~~~  520 (1075)
                      +.         .+..+    .|.|......|.|.|+|.|.|..|...
T Consensus       166 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          166 ITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             CEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             cceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            52         12223    478888888899999999999988654

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.65  E-value=1.2e-15  Score=157.30  Aligned_cols=167  Identities=17%  Similarity=0.224  Sum_probs=118.6

Q ss_pred             ecCceeeccCCeEEEEEEEecCC--CcEEEEEECC--Ee---c---CC-------------CCcEEEEEc--CCEEEEEE
Q psy16863        355 RLHDIAVKVGTRARLLVEIRSPT--EIKIHWYRND--RK---L---EE-------------NKIYRTQHD--GNFYFIDL  409 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~g--~~---l---~~-------------~~~~~~~~~--g~~~~L~I  409 (1075)
                      .+..+.+.+|++++|.|.+.+.+  .+.|.|||++  ..   +   ..             ..|+.+..+  +....|.|
T Consensus         6 ~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   85 (220)
T 1pz5_B            6 ESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQM   85 (220)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred             ccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEE
Confidence            34567899999999999998866  6899999963  11   1   00             246666543  34567999


Q ss_pred             cccCCCCceeEEEEEEeCCCce-e--eEEEEEeecCCCCCCCeeee-ecceEEecCCeEEEEEEEECC-CCC-eEEEEeC
Q psy16863        410 SSVSLFDSGRWTCLAENAVGRS-H--CSCELSVLVPKAYKAPFFTK-ELEAILTEQGTVSLECKVMGI-PTP-QLIWYKD  483 (1075)
Q Consensus       410 ~~v~~~d~G~Y~C~a~n~~g~~-~--~s~~l~V~~~~~~~~p~~~~-~~~~~~~~g~~v~l~C~~~g~-p~~-~v~W~~~  483 (1075)
                      .+++.+|+|.|.|.+.|..+.. .  ..+.|.|...+. .+|.+.. .....+.+|+.++|.|.+.|. |.| .|+|+++
T Consensus        86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~-~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  164 (220)
T 1pz5_B           86 NNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATT-TAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYG  164 (220)
T ss_dssp             CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCC-BCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             ccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCC-CCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecC
Confidence            9999999999999999976432 1  345677765322 2344432 222235689999999999987 888 9999999


Q ss_pred             CEec-----c---CCCE----EEEEeCCCCCCCcEEEEEEEEecceeeEEEE
Q psy16863        484 NKKI-----K---AGDI----FALTANPKDPSSLGTYTCEAVNCMGAAFSTS  523 (1075)
Q Consensus       484 g~~l-----~---~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  523 (1075)
                      +..+     .   ....    ..|.|.....+| |.|+|.|.|..|....++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~  215 (220)
T 1pz5_B          165 ALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIK  215 (220)
T ss_dssp             TCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             CcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeee
Confidence            8741     1   1122    247787777666 999999999999765543

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.65  E-value=5.2e-15  Score=156.47  Aligned_cols=188  Identities=15%  Similarity=0.215  Sum_probs=124.4

Q ss_pred             ecceEEecCCeEEEEEEEECCC--CCeEEEEeCC--Ee---c-------------------------cCCCEEEEEeCCC
Q psy16863        453 ELEAILTEQGTVSLECKVMGIP--TPQLIWYKDN--KK---I-------------------------KAGDIFALTANPK  500 (1075)
Q Consensus       453 ~~~~~~~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~---l-------------------------~~~~~~~l~i~~~  500 (1075)
                      +....+.+|++++|.|.+.+.|  .+.+.|+|..  ..   +                         .......|.|.++
T Consensus         9 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   88 (256)
T 3umt_A            9 SGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSL   88 (256)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             cCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCC
Confidence            3344578999999999999876  6799999732  11   1                         0123456999999


Q ss_pred             CCCCcEEEEEEEEec----ceeeEEEEEEEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEec
Q psy16863        501 DPSSLGTYTCEAVNC----MGAAFSTSRVIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLV  576 (1075)
Q Consensus       501 ~~~d~G~Y~C~a~n~----~g~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~  576 (1075)
                      ..+|+|.|.|.+.|.    .+.......|.|........    ..........++.+...+....+.+|++++|.|.+.+
T Consensus        89 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~----~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~  164 (256)
T 3umt_A           89 TSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSG----GGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQ  164 (256)
T ss_dssp             CGGGCEEEEEEECCSTTCCSCEECCCEEEEECC-------------------CCCCEEEECSEEEECTTCCEEEEEEESS
T ss_pred             CcccCEEEEEEEccCCCccccEECCCEEEEEcCCCcccc----CcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEec
Confidence            999999999999997    33334445677653110000    0000001112556677777889999999999999999


Q ss_pred             CCCCceEEEEeC--CeEEe------------cCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceeeeeEEEE
Q psy16863        577 PPWPRSIYWYNK--EGVVE------------ASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVH  642 (1075)
Q Consensus       577 ~p~p~~v~W~~~--~~~i~------------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~  642 (1075)
                      .+.+ .+.||+.  +..+.            ...++.....+ ..++|+|.+++.+|+|.|.|.|.|..+........|.
T Consensus       165 ~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~  242 (256)
T 3umt_A          165 DIGS-NLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSG-SDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLE  242 (256)
T ss_dssp             CCTT-CEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEET-TEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEE
T ss_pred             CCCc-EEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCC-CEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEE
Confidence            8877 8999984  22211            12455554443 4568999999999999999999986544433445666


Q ss_pred             EeCC
Q psy16863        643 VLMP  646 (1075)
Q Consensus       643 v~~p  646 (1075)
                      |..+
T Consensus       243 V~~~  246 (256)
T 3umt_A          243 IKRA  246 (256)
T ss_dssp             EC--
T ss_pred             EECC
Confidence            6544

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.65  E-value=1e-15  Score=158.38  Aligned_cols=180  Identities=14%  Similarity=0.135  Sum_probs=121.1

Q ss_pred             ccceeeccceeEEEEEecCCCceEEEEecCCC-eeeEEecCCCcccc----------------CCCeEE-------EeeC
Q psy16863        250 HDIAVKVGTRARLLVEIRSPTEIKCQFDLNNT-IPFSFRAQGDHPIF----------------GNRFRA-------INRD  305 (1075)
Q Consensus       250 ~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~-~~~~w~~~~~~~~~----------------~~~~~~-------~~~~  305 (1075)
                      +++.+..|+.++|.|.+.+++.        +. ..+.|+++++..+.                ..+...       ....
T Consensus         9 ~~V~~~~G~~v~L~C~~~~~~~--------~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (225)
T 4fmk_A            9 PEVRGRLGGTVELPCHLLPPTT--------ERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADL   80 (225)
T ss_dssp             SEEEEETTSCEEECCEECSSCC--------CEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSC
T ss_pred             CEEEEecCCCEEEEEEEECCCC--------CceeEEEEEECCCcceEEEecccceeeccccccccceeeecccccccccc
Confidence            4567889999999998875431        11 13566665543321                111111       1112


Q ss_pred             CeEEEEEcccCCCCCEEEEEEEEeCCee-EEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEE-ecCCCcEEEE
Q psy16863        306 GRTELNIRRVRRDDGGRYSVTASNESGY-STAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEI-RSPTEIKIHW  383 (1075)
Q Consensus       306 ~~~~L~I~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~-~g~p~~~v~W  383 (1075)
                      +..+|.|.+++.+|+|.|+|.|.|..+. ......+.+..    +|.+...+.......++.+.+.|.+ .+.|++.+.|
T Consensus        81 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w  156 (225)
T 4fmk_A           81 RDATLAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIA----QPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITW  156 (225)
T ss_dssp             CBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEB----CCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEE
T ss_pred             CcEEEEEccCCHHHCcceEEEEEeCCCcceeeeeeeeeec----CCceeecccceeecceeeeeeeeeecCCCCCCEEEE
Confidence            3457999999999999999999997665 33344455543    5555555566667778888887776 5678899999


Q ss_pred             EECCEecCCCCcEEEEEcCCE---EEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeec
Q psy16863        384 YRNDRKLEENKIYRTQHDGNF---YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV  441 (1075)
Q Consensus       384 ~k~g~~l~~~~~~~~~~~g~~---~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~  441 (1075)
                      ++++..+..........++..   ..|.|.++..+|+|.|+|.|+|.+|....+..++|.|
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V  217 (225)
T 4fmk_A          157 ISSLGGEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSV  217 (225)
T ss_dssp             ECSSCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCB
T ss_pred             EECCccccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEE
Confidence            999876544333222233332   3699999999999999999999998876666555554

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.64  E-value=1.1e-15  Score=157.95  Aligned_cols=162  Identities=17%  Similarity=0.270  Sum_probs=115.8

Q ss_pred             cCceeeccCCeEEEEEEEecCC--CcEEEEEECC--Eec-----------------CCCCcEEEEEc--CCEEEEEEccc
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPT--EIKIHWYRND--RKL-----------------EENKIYRTQHD--GNFYFIDLSSV  412 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~g--~~l-----------------~~~~~~~~~~~--g~~~~L~I~~v  412 (1075)
                      +..+.+.+|++++|.|.+.+.+  .+.|.|||++  ..+                 ....|+.+..+  .....|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (225)
T 1op3_H            7 SGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKM   86 (225)
T ss_dssp             ECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCC
Confidence            4567899999999999998876  6899999853  211                 01346666553  45678999999


Q ss_pred             CCCCceeEEEEEEeCCC-----c---eeeEEEEEeecCCCCCCCee-eeecceEEecCCeEEEEEEEECC-CCC-eEEEE
Q psy16863        413 SLFDSGRWTCLAENAVG-----R---SHCSCELSVLVPKAYKAPFF-TKELEAILTEQGTVSLECKVMGI-PTP-QLIWY  481 (1075)
Q Consensus       413 ~~~d~G~Y~C~a~n~~g-----~---~~~s~~l~V~~~~~~~~p~~-~~~~~~~~~~g~~v~l~C~~~g~-p~~-~v~W~  481 (1075)
                      +.+|+|.|.|.+.|..|     .   ......|.|...+. .+|.+ ...+...+.+|+.++|.|.+.|. |.+ .|+|+
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~-~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~  165 (225)
T 1op3_H           87 RVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPAST-KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN  165 (225)
T ss_dssp             CGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSC-BCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECC
T ss_pred             ChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCC-cCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEe
Confidence            99999999999999865     2   11345777776322 23333 22322235679999999999986 776 99999


Q ss_pred             eCCEecc---------CCCEE----EEEeCCCCCCCcEEEEEEEEecceee
Q psy16863        482 KDNKKIK---------AGDIF----ALTANPKDPSSLGTYTCEAVNCMGAA  519 (1075)
Q Consensus       482 ~~g~~l~---------~~~~~----~l~i~~~~~~d~G~Y~C~a~n~~g~~  519 (1075)
                      +++..+.         .+..+    .|.|.....+| |.|+|.|.|..+..
T Consensus       166 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~  215 (225)
T 1op3_H          166 SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  215 (225)
T ss_dssp             TTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTE
T ss_pred             cCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCc
Confidence            9997632         12222    47787777778 99999999987654

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.64  E-value=2e-16  Score=163.56  Aligned_cols=190  Identities=15%  Similarity=0.197  Sum_probs=101.7

Q ss_pred             ceEEEEEEecCceEEEEEEEEEEeccccCchhhhhhhccCCCCCeEEeccceee-eecCCeEEEEEEEecCC----CCeE
Q psy16863        706 GSYCCVAKNVMGKAESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQ-ATVNEEFKFTVQVSISP----EPKV  780 (1075)
Q Consensus       706 G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~g~~~~l~C~v~g~p----~p~v  780 (1075)
                      |.|.|...|..+.  +.....+.                  .|+.++..+.... +..|+.+.|.|.+.|.+    .+.|
T Consensus         1 ~~~~~~~~~~~~~--c~~~~~~~------------------~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v   60 (240)
T 4acp_A            1 GTKSCDKTHTCPP--CPAPELLG------------------GPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKF   60 (240)
T ss_dssp             ------------------------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEE
T ss_pred             CceeeeeeecCCC--CCccccCC------------------CCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEE
Confidence            7899999997764  22221111                  3555556665555 56799999999999964    3489


Q ss_pred             EEEECCEEeecCCcEEEEEeeCc----EEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEEecCCCCCCeeeeecc-
Q psy16863        781 SWFRDDQQVVESDNVKILKETLG----VCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELK-  855 (1075)
Q Consensus       781 ~W~k~g~~i~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~-  855 (1075)
                      +|+|||+++............++    ...|.|.....+|.|.|+|.|.|..+.......+.+. .....+|.+..... 
T Consensus        61 ~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~-~~~~~~P~V~v~~~~  139 (240)
T 4acp_A           61 NWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKA-KGQPREPQVYTLPPS  139 (240)
T ss_dssp             EEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCC-CSCCBCCEEEEECCC
T ss_pred             EEEECCcccCCceeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCcccccccccc-CCCCCCCEEEEECCC
Confidence            99999998854211100011111    2468898888899999999999988743222222211 11223454432221 


Q ss_pred             eeecCCCeEEEEEEEEcc-CCC-eeEEEECCEEcCCCCeeEEEECCCC--------------ceeeEEEEEEEEeCC
Q psy16863        856 AVLSEGGAVNLECKVIGV-PQP-TLKWFKDGRELKAGDIHKIISGEDG--------------TCCLGIYTCEAHNCM  916 (1075)
Q Consensus       856 ~~~~~g~~~~L~C~v~g~-p~p-~v~W~k~g~~l~~~~~~~i~~~~~~--------------~~d~G~Y~C~a~N~~  916 (1075)
                      ....+|+.++|.|.+.|. |.+ .|+|+|||.++.......+....++              ..+.|.|+|.|.|..
T Consensus       140 ~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~  216 (240)
T 4acp_A          140 RDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA  216 (240)
T ss_dssp             GGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             hHHhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECC
Confidence            112248899999999994 553 7999999998753211111111111              124699999999964

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.64  E-value=1.7e-15  Score=156.17  Aligned_cols=162  Identities=19%  Similarity=0.328  Sum_probs=111.4

Q ss_pred             eeeeecCCeEEEEEEEecCC--CCeEEEEECC--EE---e---e-------------cCCcEEEEEee-CcEEEEEEccc
Q psy16863        757 SCQATVNEEFKFTVQVSISP--EPKVSWFRDD--QQ---V---V-------------ESDNVKILKET-LGVCHLKIHAL  812 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~g~p--~p~v~W~k~g--~~---i---~-------------~~~~~~~~~~~-~~~~~L~I~~~  812 (1075)
                      ...+.+|++++|.|.+.+.+  .+.+.|||..  ..   +   .             ...|+.+..+. .+.+.|.|.++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   88 (221)
T 3m8o_H            9 GGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNSL   88 (221)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECSC
T ss_pred             CEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECCC
Confidence            45688999999999999754  6799999842  11   1   0             12567665543 45778999999


Q ss_pred             cCCCCeEEEEEEEeCC--ceEEEEEEEEEEecCCCCCCeee-eecceeecCCCeEEEEEEEEc-cCC--CeeEEEECCEE
Q psy16863        813 EVADQAEWKCIATNDF--GQSITSCFLKLNVPKHYKKPKFL-EELKAVLSEGGAVNLECKVIG-VPQ--PTLKWFKDGRE  886 (1075)
Q Consensus       813 ~~~D~G~Y~C~A~N~~--G~~~~s~~l~V~~~~~~~~p~~~-~~~~~~~~~g~~~~L~C~v~g-~p~--p~v~W~k~g~~  886 (1075)
                      +.+|+|.|.|.+.|..  ........|.|...+ ..+|.+. ...... .+|+.++|.|.+.| .|.  +.|+|+|||.+
T Consensus        89 ~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~-~~~p~v~~~~~~~~-~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~  166 (221)
T 3m8o_H           89 KSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSAS-PTSPKVFPLSLCST-QPDGNVVIACLVQGFFPQEPLSVTWSESGQG  166 (221)
T ss_dssp             CGGGCEEEEEEEESCTTCCCBBCCEEEEECSCC-CBCCEEEEEECCSC-CCTTEEEEEEEEEEEBSSCSEEEEESCCSTT
T ss_pred             CHHHCEEEEEEEECCChhheECCCEEEEEecCC-CCCCeEEEecCccc-ccCCCEEEEEEEEeeECCCCEEEEEEECCEE
Confidence            9999999999999874  112223456665322 2344443 222222 68999999999998 676  48999999987


Q ss_pred             c----------CCCCeeE----EEECCCCceeeEEEEEEEEeCCeeEE
Q psy16863        887 L----------KAGDIHK----IISGEDGTCCLGIYTCEAHNCMGTTS  920 (1075)
Q Consensus       887 l----------~~~~~~~----i~~~~~~~~d~G~Y~C~a~N~~G~~~  920 (1075)
                      +          ..+..+.    |.+......|.|.|+|.|.|..|...
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~~  214 (221)
T 3m8o_H          167 VTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQ  214 (221)
T ss_dssp             CEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCCE
T ss_pred             CceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCce
Confidence            6          2333332    44444444578999999999987653

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.64  E-value=1.1e-15  Score=133.85  Aligned_cols=93  Identities=14%  Similarity=0.248  Sum_probs=85.0

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCC--CcEEEEEcCCEEEEEEcccCCCCceeEEEEEE
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN--KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAE  425 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~--~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~  425 (1075)
                      .||.|...+.++.+.+|+++.|.|.+.|.|.|.|+|+|||..|...  .++.+...+..++|.|.+++.+|+|.|+|.|+
T Consensus         4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   83 (100)
T 3knb_A            4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLG   83 (100)
T ss_dssp             EEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEE
Confidence            4788988889999999999999999999999999999999999765  36788888888899999999999999999999


Q ss_pred             eCCCceeeEEEEEee
Q psy16863        426 NAVGRSHCSCELSVL  440 (1075)
Q Consensus       426 n~~g~~~~s~~l~V~  440 (1075)
                      |..|....++.|.|.
T Consensus        84 N~~G~~~~~~~l~V~   98 (100)
T 3knb_A           84 NEFGSDSATVNIHIR   98 (100)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             ECCCEEEEEEEEEEE
Confidence            999999888888875

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.64  E-value=5e-15  Score=156.75  Aligned_cols=184  Identities=12%  Similarity=0.173  Sum_probs=122.8

Q ss_pred             cccccccceeeccceeEEEEEecCC----CceEEEEec-CCCeeeE-EecCCCcc----ccCCCeEEEee--CCeEEEEE
Q psy16863        245 FIRRLHDIAVKVGTRARLLVEIRSP----TEIKCQFDL-NNTIPFS-FRAQGDHP----IFGNRFRAINR--DGRTELNI  312 (1075)
Q Consensus       245 ~~~~~~~~~v~~g~~~~l~c~~~~~----~~~~c~~~~-~~~~~~~-w~~~~~~~----~~~~~~~~~~~--~~~~~L~I  312 (1075)
                      .+..+....+.+|+.++|.|.+.+.    ..+.|.... +....+. +...++..    ....++.+..+  .+..+|+|
T Consensus        11 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   90 (257)
T 3gkz_A           11 QLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQL   90 (257)
T ss_dssp             EEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred             EEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEE
Confidence            3445566779999999999998752    222221110 1111111 11111111    11356666643  45678999


Q ss_pred             cccCCCCCEEEEEEEEeC----CeeEEEEEEEEEecCC----------CCCCeeeeecCceeeccCCeEEEEEEEecCCC
Q psy16863        313 RRVRRDDGGRYSVTASNE----SGYSTAKFELSVESQV----------PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTE  378 (1075)
Q Consensus       313 ~~~~~~d~G~Y~C~a~n~----~g~~~~~~~l~V~~~~----------~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~  378 (1075)
                      .+++.+|+|.|.|.|.|.    .......+.|.|....          ..+|.+...+....+.+|++++|.|.+.+.+.
T Consensus        91 ~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~  170 (257)
T 3gkz_A           91 KSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVS  170 (257)
T ss_dssp             CSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCC
T ss_pred             CCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCcc
Confidence            999999999999999996    2223445667776420          12466666677789999999999999988777


Q ss_pred             c-EEEEEEC--CEecC------------CCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCC
Q psy16863        379 I-KIHWYRN--DRKLE------------ENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAV  428 (1075)
Q Consensus       379 ~-~v~W~k~--g~~l~------------~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~  428 (1075)
                      + .+.|||+  +..+.            ...++.....+....|.|.+++.+|+|.|.|.|.|..
T Consensus       171 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~  235 (257)
T 3gkz_A          171 SSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSF  235 (257)
T ss_dssp             GGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             ceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCC
Confidence            6 9999994  33221            1256666667777889999999999999999998754

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.64  E-value=6.9e-16  Score=152.50  Aligned_cols=153  Identities=14%  Similarity=0.209  Sum_probs=109.7

Q ss_pred             CceeeccCCeEEEEEEEec-CCCcEEEEEEC-CEecC------------CC--CcEEEEEcCCEEEEEEcccCCCCceeE
Q psy16863        357 HDIAVKVGTRARLLVEIRS-PTEIKIHWYRN-DRKLE------------EN--KIYRTQHDGNFYFIDLSSVSLFDSGRW  420 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g-~p~~~v~W~k~-g~~l~------------~~--~~~~~~~~g~~~~L~I~~v~~~d~G~Y  420 (1075)
                      ..+.+.+|++++|.|.+.+ .+.+.|.|+|+ +..+.            ..  .|+.+..  ....|.|.+++.+|+|.|
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~--~~~sL~I~~v~~~D~G~Y   84 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDK--TNGALRIYNVSKEDRGDY   84 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECT--TTCCEEECSCCGGGCEEE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeC--CCccEEEcCCCHHHCeEE
Confidence            4567899999999999854 34689999995 32221            11  3444411  112489999999999999


Q ss_pred             EEEEEeCCCceeeEEEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEE-ECCCCCeEEEEeCCEeccCCCEEEEEeCC
Q psy16863        421 TCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKV-MGIPTPQLIWYKDNKKIKAGDIFALTANP  499 (1075)
Q Consensus       421 ~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~v~W~~~g~~l~~~~~~~l~i~~  499 (1075)
                      +|.+.+.. .....+.|.|..++  ..|.+..       .+..+.|.|.+ .| |.|.|+|++++..+.......|.+..
T Consensus        85 ~C~v~~~~-~~~~~~~L~V~~~~--~~P~i~~-------~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~~~~~~l~~~~  153 (180)
T 2dru_A           85 YMRMLHET-EDQWKITMEVYEMV--SKPMIYW-------ECSNATLTCEVLEG-TDVELKLYQGKEHLRSLRQKTMSYQW  153 (180)
T ss_dssp             EEEEESSS-EEEEEEEEEEECCC--CCCEEEE-------EGGGTEEEEECSSC-TTCEEEEEETTEEEEEESSSEEEEEC
T ss_pred             EEEEEcCC-eEEEEEEEEEECCC--CCCEEEe-------cCCCEEEEEEeCCC-CCCEEEEEECCeECcCCCCCEEEEEE
Confidence            99998876 55666777777643  2344332       34569999999 56 99999999999998633334555533


Q ss_pred             CCCCCcEEEEEEEEecceeeEEEEE
Q psy16863        500 KDPSSLGTYTCEAVNCMGAAFSTSR  524 (1075)
Q Consensus       500 ~~~~d~G~Y~C~a~n~~g~~~~~~~  524 (1075)
                        .+|+|.|+|.|.|..|...+...
T Consensus       154 --~~d~g~Y~C~a~N~~~~~~~~~~  176 (180)
T 2dru_A          154 --TNLRAPFKCKAVNRVSQESEMEV  176 (180)
T ss_dssp             --SCCSSCEEEEEEETTEEEEEEEC
T ss_pred             --hhcCccEEEEEecCcCcccccee
Confidence              67899999999999998766543

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.63  E-value=8.3e-16  Score=157.60  Aligned_cols=166  Identities=17%  Similarity=0.271  Sum_probs=111.7

Q ss_pred             ceeeeecCCeEEEEEEEecCC--CCeEEEEECC--EEe---e-------------cCCcEEEEEee-CcEEEEEEccccC
Q psy16863        756 KSCQATVNEEFKFTVQVSISP--EPKVSWFRDD--QQV---V-------------ESDNVKILKET-LGVCHLKIHALEV  814 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g~p--~p~v~W~k~g--~~i---~-------------~~~~~~~~~~~-~~~~~L~I~~~~~  814 (1075)
                      ....+.+|++++|.|.+.+.|  .+.+.|||++  ..+   .             ...++.+..+. .+.+.|.|.+++.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (215)
T 1c5d_H            8 GPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQT   87 (215)
T ss_dssp             CCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCG
T ss_pred             CCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCc
Confidence            445688999999999999865  5789999862  211   0             12466665432 3467999999999


Q ss_pred             CCCeEEEEEEEeCCce---EEEEEEEEEEecCCCCCCeeee-ecceeecCCCeEEEEEEEEcc-CCC-eeEEEECCEEcC
Q psy16863        815 ADQAEWKCIATNDFGQ---SITSCFLKLNVPKHYKKPKFLE-ELKAVLSEGGAVNLECKVIGV-PQP-TLKWFKDGRELK  888 (1075)
Q Consensus       815 ~D~G~Y~C~A~N~~G~---~~~s~~l~V~~~~~~~~p~~~~-~~~~~~~~g~~~~L~C~v~g~-p~p-~v~W~k~g~~l~  888 (1075)
                      +|+|.|.|.|.|..|.   ....+.|.|...+ ..+|.+.. .....+.+|+.++|.|.+.|. |.| .|+|+|+|..+.
T Consensus        88 ~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~-~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~  166 (215)
T 1c5d_H           88 EDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQ-TTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSD  166 (215)
T ss_dssp             GGCEEEEEEECCSSSCSCCBCCCEEEEECSSC-CBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCCS
T ss_pred             ccCEEEEEEEecCCcccceEcCCEEEEecCCC-CCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCccCc
Confidence            9999999999997432   1123567776322 12344332 222235689999999999997 887 999999987643


Q ss_pred             C--------CCeeEEE--ECCCCceeeEEEEEEEEeCCeeEEEEE
Q psy16863        889 A--------GDIHKII--SGEDGTCCLGIYTCEAHNCMGTTSSSA  923 (1075)
Q Consensus       889 ~--------~~~~~i~--~~~~~~~d~G~Y~C~a~N~~G~~~~~~  923 (1075)
                      .        +..+.+.  +......| |.|+|.|.|..|......
T Consensus       167 ~~~~~~~~~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~~~  210 (215)
T 1c5d_H          167 VHTFPAVLQSGLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKVDK  210 (215)
T ss_dssp             CCBCCCEEETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             eEecCcccCCCCEEEEEEEecccCCC-CeEEEEEEeCCCCccEEE
Confidence            1        1223221  11222234 999999999999865443

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.63  E-value=3.3e-16  Score=159.49  Aligned_cols=156  Identities=15%  Similarity=0.201  Sum_probs=94.7

Q ss_pred             ecCCeEEEEEEEecCC----CCeEEEEECCEEeecCCcEEEEEeeCcE----EEEEEccccCCCCeEEEEEEEeCCceEE
Q psy16863        761 TVNEEFKFTVQVSISP----EPKVSWFRDDQQVVESDNVKILKETLGV----CHLKIHALEVADQAEWKCIATNDFGQSI  832 (1075)
Q Consensus       761 ~~g~~~~l~C~v~g~p----~p~v~W~k~g~~i~~~~~~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~A~N~~G~~~  832 (1075)
                      ..|+++.|.|.+.|.|    .+.|+|+|+|.++............++.    ..|.|.....+|+|.|+|.|.|..|...
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~   95 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP   95 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcc
Confidence            6899999999999875    3499999999887543110000111221    2344555556669999999999988653


Q ss_pred             EEEEEEEEecCCCCCCeeee-ecceeecCCCeEEEEEEEEcc-CC-CeeEEEECCEEcCCCCeeEEEECCCC--------
Q psy16863        833 TSCFLKLNVPKHYKKPKFLE-ELKAVLSEGGAVNLECKVIGV-PQ-PTLKWFKDGRELKAGDIHKIISGEDG--------  901 (1075)
Q Consensus       833 ~s~~l~V~~~~~~~~p~~~~-~~~~~~~~g~~~~L~C~v~g~-p~-p~v~W~k~g~~l~~~~~~~i~~~~~~--------  901 (1075)
                      .+..+.+ ......+|.+.. ........|+.++|.|.+.|. |. +.|+|+|||.++.......+....++        
T Consensus        96 ~~~~v~~-~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l  174 (207)
T 1l6x_A           96 IEKTISK-AKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKL  174 (207)
T ss_dssp             EEEEECC-CCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEE
T ss_pred             eEEEecc-CCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCCCCEEEEEEE
Confidence            3333321 001123344322 111112246679999999996 44 38999999998863211111111121        


Q ss_pred             ------ceeeEEEEEEEEeCCe
Q psy16863        902 ------TCCLGIYTCEAHNCMG  917 (1075)
Q Consensus       902 ------~~d~G~Y~C~a~N~~G  917 (1075)
                            ..|.|.|+|.|.|...
T Consensus       175 ~i~~~~~~~~g~YtC~a~n~~l  196 (207)
T 1l6x_A          175 TVDKSRWQQGNVFSCSVMHEAL  196 (207)
T ss_dssp             EEEHHHHHTTCCEEEEEECTTS
T ss_pred             EECHHHcCCCCEEEEEEEcCCc
Confidence                  1247999999999764

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.63  E-value=7.1e-15  Score=145.93  Aligned_cols=148  Identities=15%  Similarity=0.241  Sum_probs=110.9

Q ss_pred             eeeccCCeEEEEEEEecCCCc--EEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEE
Q psy16863        359 IAVKVGTRARLLVEIRSPTEI--KIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCE  436 (1075)
Q Consensus       359 ~~v~~G~~v~l~C~~~g~p~~--~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~  436 (1075)
                      +.+..|++++|.|.+ +.|.+  .|+|++.+..+   .+..  .......|.|.+++.+|+|.|.|.|.|..|....++.
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~~~--~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~   90 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GAVQ--SDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQ   90 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CCEE--EESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---CcEE--ecCCccEEEECccCcccCceEEEEEEeCCCceEEEEE
Confidence            689999999999999 88777  99999976555   2222  2345567999999999999999999999888888899


Q ss_pred             EEeecCCCCCCCeeeeecceEEecCCeEEEEEEEECC-CC----CeEEEEeCCEeccCCCE-------------------
Q psy16863        437 LSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGI-PT----PQLIWYKDNKKIKAGDI-------------------  492 (1075)
Q Consensus       437 l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~-p~----~~v~W~~~g~~l~~~~~-------------------  492 (1075)
                      |+|..+|..    ....+. .+.+|+.+ |.|.+.|. |.    ++|+|+|||++|.....                   
T Consensus        91 ltV~~~P~~----~~i~~~-~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~  164 (210)
T 1gsm_A           91 LLVYAFPNQ----LTVSPA-ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVL  164 (210)
T ss_dssp             EEEEBCCSE----EEEESS-SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCC
T ss_pred             EEEEecCCC----cEEccc-eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcceE
Confidence            999887642    111222 46678888 99999985 64    48999999999853311                   


Q ss_pred             E----EEEeCCCCCCCcEEEEEEEEeccee
Q psy16863        493 F----ALTANPKDPSSLGTYTCEAVNCMGA  518 (1075)
Q Consensus       493 ~----~l~i~~~~~~d~G~Y~C~a~n~~g~  518 (1075)
                      +    ++.+......|.+.|+|.|.+..-.
T Consensus       165 ~~vts~~~~~~~~~D~~~~~tC~a~~~L~~  194 (210)
T 1gsm_A          165 FRVTERWRLPPLGTPVPPALYCQATMRLPG  194 (210)
T ss_dssp             EEEEEEEECCCCCSSCCSEEEEEEEEEETT
T ss_pred             EEEEEEEeecCCcccCCceEEEEEEeeCCC
Confidence            1    1223355556668999999986533

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.63  E-value=8.3e-17  Score=167.76  Aligned_cols=167  Identities=15%  Similarity=0.286  Sum_probs=98.3

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECC--Eec------------CCCCcEEEEEcCCEEEEEEcccCC
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRND--RKL------------EENKIYRTQHDGNFYFIDLSSVSL  414 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g--~~l------------~~~~~~~~~~~g~~~~L~I~~v~~  414 (1075)
                      .+.+...+..+.+.+|++++|.|.+.+.|.+.|.|||++  ..+            ....++.....+....|.|.+++.
T Consensus        23 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  102 (233)
T 3bqu_C           23 ETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLS  102 (233)
T ss_dssp             CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----C
T ss_pred             ceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCH
Confidence            344555677888999999999999988877889999964  211            012344333344455799999999


Q ss_pred             CCceeEEEEEEeCCCcee-eEEEEEeecCCCCCCCeeeeec-ceEEecCCeEEEEEEEECC-CCC-eEEEEeCCEeccCC
Q psy16863        415 FDSGRWTCLAENAVGRSH-CSCELSVLVPKAYKAPFFTKEL-EAILTEQGTVSLECKVMGI-PTP-QLIWYKDNKKIKAG  490 (1075)
Q Consensus       415 ~d~G~Y~C~a~n~~g~~~-~s~~l~V~~~~~~~~p~~~~~~-~~~~~~g~~v~l~C~~~g~-p~~-~v~W~~~g~~l~~~  490 (1075)
                      +|+|.|.|.|.|..+... ....|.|...+  .+|.+.... .....+|+.++|.|.+.|. |++ .|+|+|||+++..+
T Consensus       103 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~--~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~  180 (233)
T 3bqu_C          103 EDVADYYCLQSDNLPYTFGGGTNLEIKRAD--AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNG  180 (233)
T ss_dssp             CCCSEEEEEECSSSSCCBCCCCBC---CCC--BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CC
T ss_pred             HHCEEEEEEEecCCceeecCCEEEEEeCCC--CCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCC
Confidence            999999999998765332 22345554432  244444322 2223468999999999985 443 79999999887544


Q ss_pred             -----------C-----EEEEEeCCCCCCCcEEEEEEEEecce
Q psy16863        491 -----------D-----IFALTANPKDPSSLGTYTCEAVNCMG  517 (1075)
Q Consensus       491 -----------~-----~~~l~i~~~~~~d~G~Y~C~a~n~~g  517 (1075)
                                 +     ...|.|.....+|+|.|+|.|.|...
T Consensus       181 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  223 (233)
T 3bqu_C          181 VLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  223 (233)
T ss_dssp             EEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred             ceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence                       0     12467777777889999999999653

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.63  E-value=9.8e-16  Score=162.37  Aligned_cols=168  Identities=12%  Similarity=0.101  Sum_probs=103.4

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEEC--C-E--Eee-cC--------------CcEEEEEeeCcEEEE
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRD--D-Q--QVV-ES--------------DNVKILKETLGVCHL  807 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g-~--~i~-~~--------------~~~~~~~~~~~~~~L  807 (1075)
                      +|.+...+....+.+|++++|.|.+.+.|.+.+.|||.  + .  .+. ..              .++.......+...|
T Consensus         2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (259)
T 3omz_A            2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM   81 (259)
T ss_dssp             ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred             ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence            34555566678899999999999999999999999992  2 1  111 00              111111122234579


Q ss_pred             EEccccCCCCeEEEEEEEeCCc---eEEEEEEEEEEecCCCC------------CCeeeeecc-eeecCCCeEEEEEEEE
Q psy16863        808 KIHALEVADQAEWKCIATNDFG---QSITSCFLKLNVPKHYK------------KPKFLEELK-AVLSEGGAVNLECKVI  871 (1075)
Q Consensus       808 ~I~~~~~~D~G~Y~C~A~N~~G---~~~~s~~l~V~~~~~~~------------~p~~~~~~~-~~~~~g~~~~L~C~v~  871 (1075)
                      .|.+++.+|+|.|.|.|.|..|   .......|.|..+....            .|.+...+. ..+.+|++++|.|.+.
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~  161 (259)
T 3omz_A           82 ILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYE  161 (259)
T ss_dssp             EESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEE
T ss_pred             EECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECC
Confidence            9999999999999999999877   23334667776542111            234444443 3477999999999998


Q ss_pred             cc-CCCeeEEEECC--EEcC-----------------------CCCeeEEEECCCCceeeEEEEEEEEeC
Q psy16863        872 GV-PQPTLKWFKDG--RELK-----------------------AGDIHKIISGEDGTCCLGIYTCEAHNC  915 (1075)
Q Consensus       872 g~-p~p~v~W~k~g--~~l~-----------------------~~~~~~i~~~~~~~~d~G~Y~C~a~N~  915 (1075)
                      +. |.+.+.|||++  ..+.                       .+....|.+......|+|.|.|.|.+.
T Consensus       162 ~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  231 (259)
T 3omz_A          162 TSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGES  231 (259)
T ss_dssp             CCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred             CccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence            75 78899999843  1110                       112234777778889999999999864

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.63  E-value=1.5e-15  Score=162.71  Aligned_cols=171  Identities=15%  Similarity=0.174  Sum_probs=117.7

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECC--EE---e----------e----cCCcEEEEEeeCcEEEEE
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDD--QQ---V----------V----ESDNVKILKETLGVCHLK  808 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g--~~---i----------~----~~~~~~~~~~~~~~~~L~  808 (1075)
                      .+.+...+..+.+.+|++++|.|.+.+.|.+.+.|||++  ..   +          .    ...++.+..+..+...|.
T Consensus        24 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~  103 (279)
T 2wbj_D           24 GAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT  103 (279)
T ss_dssp             CCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred             cceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence            456677777888999999999999998899999999964  11   1          0    134677665445678999


Q ss_pred             EccccCCCCeEEEEEEEeCCc----e--EEEEEEEEEEecC-CCCCCeeeee-cc-eeecCCCeEEEEEEEEcc-CC-Ce
Q psy16863        809 IHALEVADQAEWKCIATNDFG----Q--SITSCFLKLNVPK-HYKKPKFLEE-LK-AVLSEGGAVNLECKVIGV-PQ-PT  877 (1075)
Q Consensus       809 I~~~~~~D~G~Y~C~A~N~~G----~--~~~s~~l~V~~~~-~~~~p~~~~~-~~-~~~~~g~~~~L~C~v~g~-p~-p~  877 (1075)
                      |.+++.+|+|.|+|.|.|..|    .  ......|.|..+. ...+|.+... .. ..+.+|+.++|.|.+.|. |. |.
T Consensus       104 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~  183 (279)
T 2wbj_D          104 VTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVE  183 (279)
T ss_dssp             ESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEE
T ss_pred             EccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcE
Confidence            999999999999999999432    1  1123567776532 1234544321 11 124478999999999997 43 68


Q ss_pred             eEEEECCEEcCCCC----------------eeE----EEECCCCce-eeEEEEEEEEeCCee
Q psy16863        878 LKWFKDGRELKAGD----------------IHK----IISGEDGTC-CLGIYTCEAHNCMGT  918 (1075)
Q Consensus       878 v~W~k~g~~l~~~~----------------~~~----i~~~~~~~~-d~G~Y~C~a~N~~G~  918 (1075)
                      |+|+|||+++..+.                .+.    |.+...... +.|.|+|.|.|....
T Consensus       184 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~  245 (279)
T 2wbj_D          184 LSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  245 (279)
T ss_dssp             EEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBC
T ss_pred             EEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCC
Confidence            99999999886431                111    333332222 368899999997654

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.63  E-value=5.1e-15  Score=157.59  Aligned_cols=167  Identities=14%  Similarity=0.260  Sum_probs=117.8

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCC-----CcEEEEEECC--Ee---cC---------CCCcEEEEEcCCEEEEEE
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPT-----EIKIHWYRND--RK---LE---------ENKIYRTQHDGNFYFIDL  409 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p-----~~~v~W~k~g--~~---l~---------~~~~~~~~~~g~~~~L~I  409 (1075)
                      .+.+...+..+.+.+|++++|.|.+.+.+     .+.+.|||++  ..   +.         ...++.+...+....|.|
T Consensus        15 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I   94 (268)
T 1x9q_A           15 DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKI   94 (268)
T ss_dssp             CCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred             cceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEE
Confidence            45566677788999999999999998876     5899999953  21   10         135677766677778999


Q ss_pred             cccCCCCceeEEEEEEeCCCce-eeEEEEEeecCCCCCC----C---------------eeeeecceEEecCCeEEEEEE
Q psy16863        410 SSVSLFDSGRWTCLAENAVGRS-HCSCELSVLVPKAYKA----P---------------FFTKELEAILTEQGTVSLECK  469 (1075)
Q Consensus       410 ~~v~~~d~G~Y~C~a~n~~g~~-~~s~~l~V~~~~~~~~----p---------------~~~~~~~~~~~~g~~v~l~C~  469 (1075)
                      .+++.+|+|.|.|.+.|..+.. .....|.|..++....    |               .+..+....+.+|++++|.|.
T Consensus        95 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~  174 (268)
T 1x9q_A           95 NRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCV  174 (268)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEE
T ss_pred             CCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEE
Confidence            9999999999999999875532 2345677765432111    1               122223345889999999999


Q ss_pred             EECCCC--CeEEEEeC--CEecc--------------------C----------CCEEEEEeCCCCCCCcEEEEEEEEec
Q psy16863        470 VMGIPT--PQLIWYKD--NKKIK--------------------A----------GDIFALTANPKDPSSLGTYTCEAVNC  515 (1075)
Q Consensus       470 ~~g~p~--~~v~W~~~--g~~l~--------------------~----------~~~~~l~i~~~~~~d~G~Y~C~a~n~  515 (1075)
                      +.+.|.  +.+.|+|+  ++.+.                    .          .....|.|.++..+|+|.|+|.|.|.
T Consensus       175 ~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          175 TSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGASY  254 (268)
T ss_dssp             EESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             ecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence            998764  79999985  22110                    0          11357999999999999999999984

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.63  E-value=2.1e-15  Score=162.42  Aligned_cols=164  Identities=13%  Similarity=0.193  Sum_probs=113.0

Q ss_pred             cceeeeecCCeEEEEEEEecCC--CCeEEEEECC--EE---ee--------------cCCcEEEEEe-eCcEEEEEEccc
Q psy16863        755 LKSCQATVNEEFKFTVQVSISP--EPKVSWFRDD--QQ---VV--------------ESDNVKILKE-TLGVCHLKIHAL  812 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p--~p~v~W~k~g--~~---i~--------------~~~~~~~~~~-~~~~~~L~I~~~  812 (1075)
                      +....+.+|++++|.|.+.+.|  .+.+.|||++  ..   +.              ...++.+..+ ..+...|+|.++
T Consensus        29 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v  108 (291)
T 2gki_A           29 SGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSL  108 (291)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSC
T ss_pred             CCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcC
Confidence            3457789999999999999877  6899999953  21   10              1245655443 234678999999


Q ss_pred             cCCCCeEEEEEEEeCC-c--eEE--EEEEEEEEec-----------CCCCCCeeeeecce-eecCCCeEEEEEEEEccCC
Q psy16863        813 EVADQAEWKCIATNDF-G--QSI--TSCFLKLNVP-----------KHYKKPKFLEELKA-VLSEGGAVNLECKVIGVPQ  875 (1075)
Q Consensus       813 ~~~D~G~Y~C~A~N~~-G--~~~--~s~~l~V~~~-----------~~~~~p~~~~~~~~-~~~~g~~~~L~C~v~g~p~  875 (1075)
                      +.+|+|.|.|.|.|.. |  ...  ....|.|..+           +...++.+...+.. .+.+|++++|.|.+.+.|.
T Consensus       109 ~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~  188 (291)
T 2gki_A          109 TSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSLF  188 (291)
T ss_dssp             CGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCCE
T ss_pred             CHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCccc
Confidence            9999999999999975 2  111  2346666551           11123334433333 4779999999999999887


Q ss_pred             C------eeEEEEC--CEEcC---------------------CCCeeEEEECCCCceeeEEEEEEEEeCCee
Q psy16863        876 P------TLKWFKD--GRELK---------------------AGDIHKIISGEDGTCCLGIYTCEAHNCMGT  918 (1075)
Q Consensus       876 p------~v~W~k~--g~~l~---------------------~~~~~~i~~~~~~~~d~G~Y~C~a~N~~G~  918 (1075)
                      +      .+.|||+  |..+.                     .+....|.+......|+|.|+|.|.|....
T Consensus       189 ~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~  260 (291)
T 2gki_A          189 NSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHMY  260 (291)
T ss_dssp             ETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             cccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCce
Confidence            6      8999996  32110                     012346778888889999999999996543

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.62  E-value=3.3e-15  Score=154.75  Aligned_cols=165  Identities=20%  Similarity=0.270  Sum_probs=114.4

Q ss_pred             cCceeeccCCeEEEEEEEecCCC----cEEEEEECC--EecC----------------CCCcEEEEEc--CCEEEEEEcc
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPTE----IKIHWYRND--RKLE----------------ENKIYRTQHD--GNFYFIDLSS  411 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p~----~~v~W~k~g--~~l~----------------~~~~~~~~~~--g~~~~L~I~~  411 (1075)
                      +..+.+.+|++++|.|.+.+.+.    +.|.|||++  ..+.                ...|+.+..+  +....|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   86 (228)
T 3bae_H            7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS   86 (228)
T ss_dssp             ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred             CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence            45678999999999999988764    899999852  2210                1246666543  3456899999


Q ss_pred             cCCCCceeEEEEEEeCCC------c---eeeEEEEEeecCCCCCCCeee-eecceEEecCCeEEEEEEEECC-CCC-eEE
Q psy16863        412 VSLFDSGRWTCLAENAVG------R---SHCSCELSVLVPKAYKAPFFT-KELEAILTEQGTVSLECKVMGI-PTP-QLI  479 (1075)
Q Consensus       412 v~~~d~G~Y~C~a~n~~g------~---~~~s~~l~V~~~~~~~~p~~~-~~~~~~~~~g~~v~l~C~~~g~-p~~-~v~  479 (1075)
                      ++.+|+|.|.|.+.|..|      .   ....+.|.|...+ ..+|.+. ..+...+.+|+.+.|.|.+.|. |.+ .|+
T Consensus        87 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~-~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~  165 (228)
T 3bae_H           87 VDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAK-TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLT  165 (228)
T ss_dssp             CCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCC-CBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEE
T ss_pred             CCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCC-CCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEE
Confidence            999999999999999765      1   1123677776422 1234443 2323335789999999999986 877 999


Q ss_pred             EEeCCEeccC--------CCE----EEEEeCCCCCCCcEEEEEEEEecceeeEEE
Q psy16863        480 WYKDNKKIKA--------GDI----FALTANPKDPSSLGTYTCEAVNCMGAAFST  522 (1075)
Q Consensus       480 W~~~g~~l~~--------~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  522 (1075)
                      |++++..+..        ...    ..|.|.....+| |.|+|.|.|..|.....
T Consensus       166 W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~  219 (228)
T 3bae_H          166 WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVD  219 (228)
T ss_dssp             EGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEE
T ss_pred             EeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEE
Confidence            9999876421        122    246777777655 99999999998866443

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.62  E-value=1.9e-15  Score=159.28  Aligned_cols=166  Identities=16%  Similarity=0.208  Sum_probs=112.1

Q ss_pred             cceeeeecCCeEEEEEEEecCC--CCeEEEEECC--EEee-----------------cCCcEEEEEee-CcEEEEEEccc
Q psy16863        755 LKSCQATVNEEFKFTVQVSISP--EPKVSWFRDD--QQVV-----------------ESDNVKILKET-LGVCHLKIHAL  812 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p--~p~v~W~k~g--~~i~-----------------~~~~~~~~~~~-~~~~~L~I~~~  812 (1075)
                      +....+.+|++++|.|.+.+.|  .+.+.|||+.  ..+.                 ...|+.+..+. .+...|.|.++
T Consensus        13 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   92 (261)
T 2xqy_G           13 PGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSL   92 (261)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCC
Confidence            4456789999999999999887  6899999963  2211                 13466665432 35678999999


Q ss_pred             cCCCCeEEEEEEEeCCceE-E--EEEEEEEEecCCCCCCeeee-ecceeecCCCeEEEEEEEEcc-CCC-eeEEEECCEE
Q psy16863        813 EVADQAEWKCIATNDFGQS-I--TSCFLKLNVPKHYKKPKFLE-ELKAVLSEGGAVNLECKVIGV-PQP-TLKWFKDGRE  886 (1075)
Q Consensus       813 ~~~D~G~Y~C~A~N~~G~~-~--~s~~l~V~~~~~~~~p~~~~-~~~~~~~~g~~~~L~C~v~g~-p~p-~v~W~k~g~~  886 (1075)
                      +.+|+|.|.|.|.|..+.. .  ....|.|...+ ..+|.+.. .....+.+|+.++|.|.+.|. |.| .|+|+|||..
T Consensus        93 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~-~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~  171 (261)
T 2xqy_G           93 TSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAK-TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLS  171 (261)
T ss_dssp             CGGGCEEEEEEEECTTSSEEEECCCEEEEECSSC-CBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGTCC
T ss_pred             CcccCeEEEEEEecCCCcceEECCCEEEEEccCC-CCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCCCc
Confidence            9999999999999975421 1  23567776422 12344322 222235679999999999985 776 9999999976


Q ss_pred             cCC---C-----Ce----eEEEECCCCceeeEEEEEEEEeCCeeEEEE
Q psy16863        887 LKA---G-----DI----HKIISGEDGTCCLGIYTCEAHNCMGTTSSS  922 (1075)
Q Consensus       887 l~~---~-----~~----~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~  922 (1075)
                      +..   .     ..    ..|.+......| |.|+|.|.|........
T Consensus       172 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~~~  218 (261)
T 2xqy_G          172 SGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVD  218 (261)
T ss_dssp             TTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEE
T ss_pred             CceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCccEE
Confidence            531   0     11    134444444446 99999999987765433

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.62  E-value=3.2e-15  Score=131.53  Aligned_cols=95  Identities=25%  Similarity=0.419  Sum_probs=87.2

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .+|.|...+.+..+..|+.+.|.|.+.|.|.|.+.|+|+|..+..+.++.+.....+...|.|.+++.+|+|.|+|.|.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   83 (99)
T 1g1c_A            4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   83 (99)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEE
Confidence            58889888899999999999999999999999999999999999888887766667788999999999999999999999


Q ss_pred             CCceEEEEEEEEEEe
Q psy16863        827 DFGQSITSCFLKLNV  841 (1075)
Q Consensus       827 ~~G~~~~s~~l~V~~  841 (1075)
                      ..|...+++.|.|..
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           84 IAGETSSHAFLLVQA   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCcEEEEEEEEEec
Confidence            999999988888864

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.62  E-value=1.1e-14  Score=151.05  Aligned_cols=172  Identities=16%  Similarity=0.207  Sum_probs=116.5

Q ss_pred             ecCceeeccCCeEEEEEEEecCC--CcEEEEEECC--Ee---c---C----------CCCcEEEEEc--CCEEEEEEccc
Q psy16863        355 RLHDIAVKVGTRARLLVEIRSPT--EIKIHWYRND--RK---L---E----------ENKIYRTQHD--GNFYFIDLSSV  412 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~g--~~---l---~----------~~~~~~~~~~--g~~~~L~I~~v  412 (1075)
                      .+..+.+.+|++++|.|.+.+.+  .+.+.|||..  ..   +   .          ...|+.+..+  +....|.|.++
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (232)
T 1dn0_B            6 QWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSV   85 (232)
T ss_dssp             EECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCC
Confidence            34567899999999999998764  6789999853  21   1   0          1356666543  45678999999


Q ss_pred             CCCCceeEEEEEEeCC--Cc----eeeEEEEEeecCCCCCCCeee-eecceEEecC-CeEEEEEEEECC-CCC-eEEEEe
Q psy16863        413 SLFDSGRWTCLAENAV--GR----SHCSCELSVLVPKAYKAPFFT-KELEAILTEQ-GTVSLECKVMGI-PTP-QLIWYK  482 (1075)
Q Consensus       413 ~~~d~G~Y~C~a~n~~--g~----~~~s~~l~V~~~~~~~~p~~~-~~~~~~~~~g-~~v~l~C~~~g~-p~~-~v~W~~  482 (1075)
                      +.+|+|.|.|.+.+..  +.    ......|.|...+. .+|.+. ..+...+..| +.++|.|.+.|. |.+ .|+|++
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~-~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~  164 (232)
T 1dn0_B           86 TAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSA-SAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKY  164 (232)
T ss_dssp             CGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCC-BCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEE
T ss_pred             CcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCC-CCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEc
Confidence            9999999999998422  11    12345777776322 234433 2223334577 899999999985 776 999999


Q ss_pred             -CCEeccC---------CCEE----EEEeCCCCC--CCcEEEEEEEEecceeeEEEEEEEE
Q psy16863        483 -DNKKIKA---------GDIF----ALTANPKDP--SSLGTYTCEAVNCMGAAFSTSRVIA  527 (1075)
Q Consensus       483 -~g~~l~~---------~~~~----~l~i~~~~~--~d~G~Y~C~a~n~~g~~~~~~~v~v  527 (1075)
                       ||+.+..         +..+    .|.|.....  .|.|.|+|.|.|..+.......+.+
T Consensus       165 ~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~  225 (232)
T 1dn0_B          165 KNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPV  225 (232)
T ss_dssp             TTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC
T ss_pred             CCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCC
Confidence             9987643         1222    467777776  7899999999999987766555443

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.62  E-value=3.6e-16  Score=162.48  Aligned_cols=170  Identities=17%  Similarity=0.145  Sum_probs=106.1

Q ss_pred             CCeEEeccceee-eecCCeEEEEEEEecC---CCC-eEEEEECCEEeecCCcE-EEEEee---CcEEEEEEccccCCCCe
Q psy16863        748 APKFIEGLKSCQ-ATVNEEFKFTVQVSIS---PEP-KVSWFRDDQQVVESDNV-KILKET---LGVCHLKIHALEVADQA  818 (1075)
Q Consensus       748 ~p~~~~~~~~~~-~~~g~~~~l~C~v~g~---p~p-~v~W~k~g~~i~~~~~~-~~~~~~---~~~~~L~I~~~~~~D~G  818 (1075)
                      |..++.++.... +.+|++++|.|.+.|.   |.+ .|+|+|++..+...... ......   .....|.|.+++.+|+|
T Consensus        16 P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g   95 (239)
T 1i1c_A           16 SSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGK   95 (239)
T ss_dssp             -CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTC
T ss_pred             CEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCC
Confidence            444445444444 7799999999999987   776 99999998766432100 000000   02357999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEEecCCCCCCeeeeecce-eecCCCeEEEEEEEEcc-CC-CeeEEEECCEEcCCCCeeEE
Q psy16863        819 EWKCIATNDFGQSITSCFLKLNVPKHYKKPKFLEELKA-VLSEGGAVNLECKVIGV-PQ-PTLKWFKDGRELKAGDIHKI  895 (1075)
Q Consensus       819 ~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~~~~~-~~~~g~~~~L~C~v~g~-p~-p~v~W~k~g~~l~~~~~~~i  895 (1075)
                      .|+|.|.|..|.......+.+ ......+|.+...... ....|+.++|.|.+.|. |. +.|+|+|||.++.......+
T Consensus        96 ~Y~C~~~~~~~~~~~~~~v~~-~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~  174 (239)
T 1i1c_A           96 TFKCKVNSGAFPAPIEKSISK-PEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPP  174 (239)
T ss_dssp             CEEEEEECSSSSSCEEEEECC-CSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCC
T ss_pred             eEEEEEecccCCCCcEEEEec-CCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCc
Confidence            999999999886422222211 1122234544322211 12357899999999995 44 47999999998854211111


Q ss_pred             EECCCCc--------------eeeEEEEEEEEeCCee
Q psy16863        896 ISGEDGT--------------CCLGIYTCEAHNCMGT  918 (1075)
Q Consensus       896 ~~~~~~~--------------~d~G~Y~C~a~N~~G~  918 (1075)
                      ....++.              .|.|.|+|.|.|..-.
T Consensus       175 ~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~  211 (239)
T 1i1c_A          175 TMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE  211 (239)
T ss_dssp             EECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             eECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence            1122211              2479999999997643

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.62  E-value=9e-16  Score=156.23  Aligned_cols=165  Identities=13%  Similarity=0.212  Sum_probs=106.8

Q ss_pred             eeeecCcee-eccCCeEEEEEEEecCC----CcEEEEEECCEecCCCCcE-EEEEcCC----EEEEEEcccCCCCceeEE
Q psy16863        352 FIRRLHDIA-VKVGTRARLLVEIRSPT----EIKIHWYRNDRKLEENKIY-RTQHDGN----FYFIDLSSVSLFDSGRWT  421 (1075)
Q Consensus       352 ~~~~~~~~~-v~~G~~v~l~C~~~g~p----~~~v~W~k~g~~l~~~~~~-~~~~~g~----~~~L~I~~v~~~d~G~Y~  421 (1075)
                      ++..+.... +.+|++++|.|.+.|.+    .+.|+|+|++..+...... .....+.    ...|.|.+++.+|+|.|+
T Consensus         5 ~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~   84 (207)
T 2vol_A            5 FIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFK   84 (207)
T ss_dssp             EEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEE
T ss_pred             EEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEE
Confidence            344444444 88999999999998763    3599999999876532100 0011111    236999999999999999


Q ss_pred             EEEEeCCCceeeEEEEEeecCCCCCCCeeeeecce-EEecCCeEEEEEEEECC-CCC-eEEEEeCCEeccCCC-------
Q psy16863        422 CLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEA-ILTEQGTVSLECKVMGI-PTP-QLIWYKDNKKIKAGD-------  491 (1075)
Q Consensus       422 C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~-~~~~g~~v~l~C~~~g~-p~~-~v~W~~~g~~l~~~~-------  491 (1075)
                      |.|.|..|.......+.+.. ....+|.+...... ...+|+.+.|.|.+.|. |++ .|+|+|||+++....       
T Consensus        85 C~a~~~~~~~~~~~~v~~~~-~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~  163 (207)
T 2vol_A           85 CRVNSAAFPAPIEKTISKTK-GRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMD  163 (207)
T ss_dssp             EEEECTTCSSCEEEEECCCC-CCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEEC
T ss_pred             EEEEccCCCCceEEEeccCC-CCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceEC
Confidence            99999988643223332210 11223444322211 12358999999999984 553 999999999875321       


Q ss_pred             ---EE----EEEeCCCCCCCcEEEEEEEEecce
Q psy16863        492 ---IF----ALTANPKDPSSLGTYTCEAVNCMG  517 (1075)
Q Consensus       492 ---~~----~l~i~~~~~~d~G~Y~C~a~n~~g  517 (1075)
                         .+    .|.+...+..|.|.|+|.|.|...
T Consensus       164 ~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l  196 (207)
T 2vol_A          164 TDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  196 (207)
T ss_dssp             TTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred             CCCCEEEEEEEEECHHHcCCCCEEEEEEECCCC
Confidence               11    244444445678999999999754

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.62  E-value=6.9e-16  Score=158.45  Aligned_cols=169  Identities=13%  Similarity=0.215  Sum_probs=108.7

Q ss_pred             CCCeeeeecCcee--eccCCeEEEEEEEecC---C-CcEEEEEECCEecCCCCcEEE-EEcCC----EEEEEEcccCCCC
Q psy16863        348 DAPAFIRRLHDIA--VKVGTRARLLVEIRSP---T-EIKIHWYRNDRKLEENKIYRT-QHDGN----FYFIDLSSVSLFD  416 (1075)
Q Consensus       348 ~~p~~~~~~~~~~--v~~G~~v~l~C~~~g~---p-~~~v~W~k~g~~l~~~~~~~~-~~~g~----~~~L~I~~v~~~d  416 (1075)
                      .+|.+...+....  +.+|++++|.|.+.|.   | .+.|+|+|+|..+........ ...+.    ...|.|.+++.+|
T Consensus         8 ~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   87 (218)
T 2rgs_A            8 GGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMS   87 (218)
T ss_dssp             -CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHT
T ss_pred             CCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCC
Confidence            3555544444444  8899999999999876   3 379999999988754321111 11111    2469999999999


Q ss_pred             ceeEEEEEEeCCCceeeEEEEEeecCCCCCCCeeeeec-ceEEecCCeEEEEEEEEC-CCCC-eEEEEeCCEeccCC---
Q psy16863        417 SGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKEL-EAILTEQGTVSLECKVMG-IPTP-QLIWYKDNKKIKAG---  490 (1075)
Q Consensus       417 ~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~-~~~~~~g~~v~l~C~~~g-~p~~-~v~W~~~g~~l~~~---  490 (1075)
                      +|.|+|.|.|..+.......+.. ......+|.+.... .....+|+.+.|.|.+.| +|.+ .|+|+|||.++...   
T Consensus        88 ~g~Y~C~~~~~~~~~~~~~~v~~-~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~  166 (218)
T 2rgs_A           88 GKEFKCKVNNKDLPSPIERTISK-IKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDT  166 (218)
T ss_dssp             TCCEEEEEEETTCSSCEEEEECC-CCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEEC
T ss_pred             CCeEEEEEECCcCCCcceEEEee-cCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceec
Confidence            99999999998775422222211 01112234443222 112235899999999998 6766 99999999987421   


Q ss_pred             -------CEE----EEEeCCCCCCCcEEEEEEEEecce
Q psy16863        491 -------DIF----ALTANPKDPSSLGTYTCEAVNCMG  517 (1075)
Q Consensus       491 -------~~~----~l~i~~~~~~d~G~Y~C~a~n~~g  517 (1075)
                             ..+    .|.+...+..|.|.|+|.|.|...
T Consensus       167 ~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l  204 (218)
T 2rgs_A          167 APVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGL  204 (218)
T ss_dssp             CCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTS
T ss_pred             ccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCC
Confidence                   111    233433334458999999999764

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.62  E-value=1e-14  Score=150.28  Aligned_cols=163  Identities=20%  Similarity=0.333  Sum_probs=116.4

Q ss_pred             ecCceeeccCCeEEEEEEEecCC--CcEEEEEECC--Eec------C-------------CCCcEEEEEc--CCEEEEEE
Q psy16863        355 RLHDIAVKVGTRARLLVEIRSPT--EIKIHWYRND--RKL------E-------------ENKIYRTQHD--GNFYFIDL  409 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~g--~~l------~-------------~~~~~~~~~~--g~~~~L~I  409 (1075)
                      .+..+.+.+|++++|.|.+.+.+  .+.+.|||..  ..+      .             ...|+.+..+  .....|.|
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   85 (221)
T 3m8o_H            6 ESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQM   85 (221)
T ss_dssp             EESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEE
T ss_pred             ccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEE
Confidence            34567799999999999998743  6799999842  111      0             1246666543  45678999


Q ss_pred             cccCCCCceeEEEEEEeCC--CceeeEEEEEeecCCCCCCCeee-eecceEEecCCeEEEEEEEEC-CCC-C-eEEEEeC
Q psy16863        410 SSVSLFDSGRWTCLAENAV--GRSHCSCELSVLVPKAYKAPFFT-KELEAILTEQGTVSLECKVMG-IPT-P-QLIWYKD  483 (1075)
Q Consensus       410 ~~v~~~d~G~Y~C~a~n~~--g~~~~s~~l~V~~~~~~~~p~~~-~~~~~~~~~g~~v~l~C~~~g-~p~-~-~v~W~~~  483 (1075)
                      .+++.+|+|.|.|.+.|..  ........|.|...+. .+|.+. ..+... .+|+.++|.|.+.+ .|. + .+.|+++
T Consensus        86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~-~~p~v~~~~~~~~-~~g~~v~L~C~~~~~~P~~~~~v~W~~~  163 (221)
T 3m8o_H           86 NSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASP-TSPKVFPLSLCST-QPDGNVVIACLVQGFFPQEPLSVTWSES  163 (221)
T ss_dssp             CSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCC-BCCEEEEEECCSC-CCTTEEEEEEEEEEEBSSCSEEEEESCC
T ss_pred             CCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCC-CCCeEEEecCccc-ccCCCEEEEEEEEeeECCCCEEEEEEEC
Confidence            9999999999999999874  2223345677764322 334443 222223 68999999999998 776 4 9999999


Q ss_pred             CEec----------cCCCEE----EEEeCCCCCCCcEEEEEEEEecceee
Q psy16863        484 NKKI----------KAGDIF----ALTANPKDPSSLGTYTCEAVNCMGAA  519 (1075)
Q Consensus       484 g~~l----------~~~~~~----~l~i~~~~~~d~G~Y~C~a~n~~g~~  519 (1075)
                      |+.+          ..+..+    .|.|......|+|.|+|.|.|..+..
T Consensus       164 g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~  213 (221)
T 3m8o_H          164 GQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS  213 (221)
T ss_dssp             STTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred             CEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence            9876          233333    37888888889999999999987654

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.61  E-value=4.7e-16  Score=161.16  Aligned_cols=168  Identities=13%  Similarity=0.142  Sum_probs=107.7

Q ss_pred             CCeE-EeccceeeeecCCeEEEEEEEecC-CC-C-eEEEEECCEEe-ecCCcEEEEEeeCc----EEEEEEccccCCCCe
Q psy16863        748 APKF-IEGLKSCQATVNEEFKFTVQVSIS-PE-P-KVSWFRDDQQV-VESDNVKILKETLG----VCHLKIHALEVADQA  818 (1075)
Q Consensus       748 ~p~~-~~~~~~~~~~~g~~~~l~C~v~g~-p~-p-~v~W~k~g~~i-~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G  818 (1075)
                      +|.+ +..+....+..|+.++|.|.+.|. |. | .|+|+|+|+.+ ........ ...++    ...|.|.+++.+|+|
T Consensus        12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~-~~~~g~~~~~s~L~I~~~~~~D~g   90 (231)
T 2w59_A           12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQ-EHFNGTYSASSAVPVSTQDWLSGE   90 (231)
T ss_dssp             CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEE-ECTTSCEEEEEEEECCHHHHHTTC
T ss_pred             CCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccce-ECCCCcEEEEEEEEecchhccCCC
Confidence            4443 455566667899999999999984 74 5 99999999877 32222111 11112    347999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEEecC-CCCCCeeee-ecceeecCCCeEEEEEEEEcc-C-CCeeEEEECCEEcCCCCeeE
Q psy16863        819 EWKCIATNDFGQSITSCFLKLNVPK-HYKKPKFLE-ELKAVLSEGGAVNLECKVIGV-P-QPTLKWFKDGRELKAGDIHK  894 (1075)
Q Consensus       819 ~Y~C~A~N~~G~~~~s~~l~V~~~~-~~~~p~~~~-~~~~~~~~g~~~~L~C~v~g~-p-~p~v~W~k~g~~l~~~~~~~  894 (1075)
                      .|+|.|.|..+..  ...+.|.... ...+|.+.. ........++.++|.|.+.|. | .+.|+|+|||.+|..+....
T Consensus        91 ~Y~C~~~~~~~~~--~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~  168 (231)
T 2w59_A           91 RFTCTVQHEELPL--PLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVT  168 (231)
T ss_dssp             CEEEEEECTTCSS--CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEE
T ss_pred             EEEEEEEcCCCCC--ceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCCCcEEEEEECCEECCCccccc
Confidence            9999999988753  3334443221 112343321 111111235679999999996 4 37899999999986542110


Q ss_pred             -------------------------EEECCCCceeeEEEEEEEEeCCee
Q psy16863        895 -------------------------IISGEDGTCCLGIYTCEAHNCMGT  918 (1075)
Q Consensus       895 -------------------------i~~~~~~~~d~G~Y~C~a~N~~G~  918 (1075)
                                               |.+......|.|.|+|.|.|....
T Consensus       169 ~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~  217 (231)
T 2w59_A          169 TAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP  217 (231)
T ss_dssp             CCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred             CccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence                                     111111123479999999998754

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.61  E-value=4.8e-15  Score=134.28  Aligned_cols=100  Identities=23%  Similarity=0.368  Sum_probs=90.2

Q ss_pred             CCCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeec-CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEE
Q psy16863        746 NKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVE-SDNVKILKETLGVCHLKIHALEVADQAEWKCIA  824 (1075)
Q Consensus       746 ~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A  824 (1075)
                      ..+|.|+..+.+..+.+|+++.|.|.+.|.|.|.+.|+|+|..+.. ..++.+.....+.+.|.|.+++.+|+|.|+|.|
T Consensus        13 ~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   92 (116)
T 2kkq_A           13 KRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSA   92 (116)
T ss_dssp             CBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEE
T ss_pred             CCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEE
Confidence            4689999999999999999999999999999999999999999874 567887766666779999999999999999999


Q ss_pred             EeCCceEEEEEEEEEEecCCC
Q psy16863        825 TNDFGQSITSCFLKLNVPKHY  845 (1075)
Q Consensus       825 ~N~~G~~~~s~~l~V~~~~~~  845 (1075)
                      .|..|....++.|.|..++..
T Consensus        93 ~N~~G~~~~~~~l~V~~~p~~  113 (116)
T 2kkq_A           93 VNEAGVTTCNTRLDVTARPNQ  113 (116)
T ss_dssp             EETTEEEEEEEEEEEECCSCC
T ss_pred             EcCCCeEEEEEEEEEeCCCCC
Confidence            999999999999999877644

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.61  E-value=2.2e-15  Score=158.09  Aligned_cols=164  Identities=15%  Similarity=0.241  Sum_probs=99.3

Q ss_pred             eeeeecCCeEEEEEEEecCC--CCeEEEEECC--EEee-----------------cCCcEEEEEee-CcEEEEEEccccC
Q psy16863        757 SCQATVNEEFKFTVQVSISP--EPKVSWFRDD--QQVV-----------------ESDNVKILKET-LGVCHLKIHALEV  814 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~g~p--~p~v~W~k~g--~~i~-----------------~~~~~~~~~~~-~~~~~L~I~~~~~  814 (1075)
                      ...+.+|++++|.|.+.+.|  .+.+.|||..  ..+.                 ...|+.+..+. .+...|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (257)
T 3bn9_D            9 GGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRA   88 (257)
T ss_dssp             CEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCG
T ss_pred             CEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCCh
Confidence            45688999999999999876  6789999853  2110                 13466665432 3567999999999


Q ss_pred             CCCeEEEEEEEeCCce---------E--E--EEEEEEEEecCCCCCCeee-eecceeecCCCeEEEEEEEEcc-CCC-ee
Q psy16863        815 ADQAEWKCIATNDFGQ---------S--I--TSCFLKLNVPKHYKKPKFL-EELKAVLSEGGAVNLECKVIGV-PQP-TL  878 (1075)
Q Consensus       815 ~D~G~Y~C~A~N~~G~---------~--~--~s~~l~V~~~~~~~~p~~~-~~~~~~~~~g~~~~L~C~v~g~-p~p-~v  878 (1075)
                      +|+|.|.|.+.|..|.         .  .  ....|.|...+ ..+|.+. ......+.+|+.++|.|.+.|. |.| .|
T Consensus        89 ~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~-~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi~v  167 (257)
T 3bn9_D           89 EDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSAS-TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV  167 (257)
T ss_dssp             GGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSC-CBCCEECCCCC-----------CCCEEEEEBSSCCEE
T ss_pred             hhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCC-CcCCcEEEecCcccccCCCcEEEEEEEeeEECCCcEE
Confidence            9999999999998651         1  1  23467776421 1234332 1222234578999999999986 777 99


Q ss_pred             EEEECCEEcC---------CCCeeE----EEECCCCceeeEEEEEEEEeCCeeEEEE
Q psy16863        879 KWFKDGRELK---------AGDIHK----IISGEDGTCCLGIYTCEAHNCMGTTSSS  922 (1075)
Q Consensus       879 ~W~k~g~~l~---------~~~~~~----i~~~~~~~~d~G~Y~C~a~N~~G~~~~~  922 (1075)
                      +|+|||..+.         .+..+.    |.+......| |.|+|.|.|..+.....
T Consensus       168 ~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~~~  223 (257)
T 3bn9_D          168 SWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD  223 (257)
T ss_dssp             EETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGTEEEE
T ss_pred             EEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCcCEE
Confidence            9999997642         122222    2222222346 99999999977654433

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.60  E-value=8.7e-15  Score=151.31  Aligned_cols=159  Identities=17%  Similarity=0.136  Sum_probs=111.5

Q ss_pred             EEecCCeEEEEEEEECCCCC---eEEEEeCCEecc--------------------------------CCCEEEEEeCCCC
Q psy16863        457 ILTEQGTVSLECKVMGIPTP---QLIWYKDNKKIK--------------------------------AGDIFALTANPKD  501 (1075)
Q Consensus       457 ~~~~g~~v~l~C~~~g~p~~---~v~W~~~g~~l~--------------------------------~~~~~~l~i~~~~  501 (1075)
                      .+..|++++|.|.+.+.|.+   .|+|+|++..+.                                ......|.|.++.
T Consensus        12 ~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~   91 (225)
T 4fmk_A           12 RGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRGLR   91 (225)
T ss_dssp             EEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECSCC
T ss_pred             EEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEccCC
Confidence            36789999999999987776   489999875431                                0122469999999


Q ss_pred             CCCcEEEEEEEEecceeeEEEEE-EEEeccccccCCCCCCcCCCCCCCCCCeeeeeccceEeecCCeEEEEEEEecCCCC
Q psy16863        502 PSSLGTYTCEAVNCMGAAFSTSR-VIARGQQSFLDNDDVPFNSLMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWP  580 (1075)
Q Consensus       502 ~~d~G~Y~C~a~n~~g~~~~~~~-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p  580 (1075)
                      .+|+|.|+|.|.|..|....... +.+.                    .++.....+.......++.+.+.|.+.+.+++
T Consensus        92 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~  151 (225)
T 4fmk_A           92 VEDEGNYTCEFATFPNGTRRGVTWLRVI--------------------AQPENHAEAQEVTIGPQSVAVARCVSTGGRPP  151 (225)
T ss_dssp             GGGCEEEEEEEEEETTEEEEEEEEEEEE--------------------BCCEEEEEECCBCCSSSCEEEEEEEEEEEBSC
T ss_pred             HHHCcceEEEEEeCCCcceeeeeeeeee--------------------cCCceeecccceeecceeeeeeeeeecCCCCC
Confidence            99999999999998776554443 3332                    23334444455556678888888877654444


Q ss_pred             ceEEEEeCCeEEecCCcEEEEEcCCc--eEEEEEeeeeecCCceEEEEEECCCCcee
Q psy16863        581 RSIYWYNKEGVVEASDKYHIMADGLG--GYSIEINYLEAVDDGEWKCVATSSSGVKQ  635 (1075)
Q Consensus       581 ~~v~W~~~~~~i~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  635 (1075)
                      ..+.|+++++.+..........++..  ...|.|.++..+|+|.|+|.|.|..|...
T Consensus       152 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~  208 (225)
T 4fmk_A          152 ARITWISSLGGEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEP  208 (225)
T ss_dssp             CEEEEECSSCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSC
T ss_pred             CEEEEEECCccccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeE
Confidence            48999998876654332222222211  23699999999999999999999988754

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.58  E-value=1.5e-14  Score=148.24  Aligned_cols=165  Identities=18%  Similarity=0.238  Sum_probs=112.8

Q ss_pred             cCceeeccCCeEEEEEEEecCC--CcEEEEEECC--EecC----------------CCCcEEEEEc--CCEEEEEEcccC
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPT--EIKIHWYRND--RKLE----------------ENKIYRTQHD--GNFYFIDLSSVS  413 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~g--~~l~----------------~~~~~~~~~~--g~~~~L~I~~v~  413 (1075)
                      +..+.+.+|++++|.|.+.+.+  .+.|.|||++  ..+.                ...|+.+..+  +....|.|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (215)
T 1c5d_H            7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ   86 (215)
T ss_dssp             ECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC
T ss_pred             CCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC
Confidence            4567899999999999998754  5799999963  2110                1246666543  346789999999


Q ss_pred             CCCceeEEEEEEeCCCc---eeeEEEEEeecCCCCCCCeee-eecceEEecCCeEEEEEEEECC-CCC-eEEEEeCCEec
Q psy16863        414 LFDSGRWTCLAENAVGR---SHCSCELSVLVPKAYKAPFFT-KELEAILTEQGTVSLECKVMGI-PTP-QLIWYKDNKKI  487 (1075)
Q Consensus       414 ~~d~G~Y~C~a~n~~g~---~~~s~~l~V~~~~~~~~p~~~-~~~~~~~~~g~~v~l~C~~~g~-p~~-~v~W~~~g~~l  487 (1075)
                      .+|+|.|.|.+.|..+.   ....+.|.|...+. .+|.+. ..+...+.+|+.+.|.|.+.|. |.+ .|+|+++|..+
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~-~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  165 (215)
T 1c5d_H           87 TEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQT-TAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSS  165 (215)
T ss_dssp             GGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCC-BCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCC
T ss_pred             cccCEEEEEEEecCCcccceEcCCEEEEecCCCC-CCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCccC
Confidence            99999999999987432   12345777774221 233333 2322335689999999999986 877 99999998764


Q ss_pred             cC--------CCEEEE--EeCCCCCCCcEEEEEEEEecceeeEEE
Q psy16863        488 KA--------GDIFAL--TANPKDPSSLGTYTCEAVNCMGAAFST  522 (1075)
Q Consensus       488 ~~--------~~~~~l--~i~~~~~~d~G~Y~C~a~n~~g~~~~~  522 (1075)
                      ..        +..+.+  .+......| |.|+|.|.|..|.....
T Consensus       166 ~~~~~~~~~~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~~  209 (215)
T 1c5d_H          166 DVHTFPAVLQSGLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKVD  209 (215)
T ss_dssp             SCCBCCCEEETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEEE
T ss_pred             ceEecCcccCCCCEEEEEEEecccCCC-CeEEEEEEeCCCCccEE
Confidence            21        133332  122333355 99999999998865433

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.58  E-value=1.2e-14  Score=128.93  Aligned_cols=95  Identities=21%  Similarity=0.413  Sum_probs=86.3

Q ss_pred             CCCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEE
Q psy16863        746 NKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT  825 (1075)
Q Consensus       746 ~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~  825 (1075)
                      ..+|.|...+.+..+.+|+.+.|.|.+.|.|.|.++|+|+|..+..+.++.+.. ..+...|.|.+++.+|+|.|+|.|.
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~   84 (103)
T 3qp3_A            6 DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTN-TSGVLTLEILDCHTDDSGTYRAVCT   84 (103)
T ss_dssp             CEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEE-ETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEE-CCCEEEEEEcCCCcccCEEEEEEEE
Confidence            368899999999999999999999999999999999999999999888887764 3457789999999999999999999


Q ss_pred             eCCceEEEEEEEEEEe
Q psy16863        826 NDFGQSITSCFLKLNV  841 (1075)
Q Consensus       826 N~~G~~~~s~~l~V~~  841 (1075)
                      |..|....++.|.|..
T Consensus        85 N~~G~~~~~~~l~V~~  100 (103)
T 3qp3_A           85 NYKGEASDYATLDVTG  100 (103)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             eCCCcEEEEEEEEEEC
Confidence            9999999999888875

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.58  E-value=8.7e-15  Score=153.11  Aligned_cols=166  Identities=17%  Similarity=0.260  Sum_probs=113.9

Q ss_pred             eeeeecCceeeccCCeEEEEEEEecCCCcEEEEEEC--------------CEecC---CCCcEEEEE-cCCEEEEEEccc
Q psy16863        351 AFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--------------DRKLE---ENKIYRTQH-DGNFYFIDLSSV  412 (1075)
Q Consensus       351 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--------------g~~l~---~~~~~~~~~-~g~~~~L~I~~v  412 (1075)
                      .+...+..+.+.+|++++|.|.+.+ +.+.|.|||.              +....   ...++.+.. .+....|.|.++
T Consensus         4 ~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v   82 (240)
T 3q5y_A            4 GVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSAL   82 (240)
T ss_dssp             CCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSC
T ss_pred             ccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcC
Confidence            4555667788999999999999865 6789999992              22111   124665554 334568999999


Q ss_pred             CCCCceeEEEEEEeCC---CceeeEEEEEeecCC-CCCCCeeee-ecce-EEecCCeEEEEEEEEC-CCCC-eEEEEeCC
Q psy16863        413 SLFDSGRWTCLAENAV---GRSHCSCELSVLVPK-AYKAPFFTK-ELEA-ILTEQGTVSLECKVMG-IPTP-QLIWYKDN  484 (1075)
Q Consensus       413 ~~~d~G~Y~C~a~n~~---g~~~~s~~l~V~~~~-~~~~p~~~~-~~~~-~~~~g~~v~l~C~~~g-~p~~-~v~W~~~g  484 (1075)
                      +.+|+|.|.|.+.+..   ........|.|.... ...+|.+.. .+.. .+.+|+.+.|.|.+.| .|.+ .++|+|+|
T Consensus        83 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g  162 (240)
T 3q5y_A           83 ELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNG  162 (240)
T ss_dssp             CGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred             ChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECC
Confidence            9999999999998432   122334566666421 123343332 2222 2456899999999998 6666 89999999


Q ss_pred             EeccCCC------------EE----EEEeCCCCCCC-cEEEEEEEEecce
Q psy16863        485 KKIKAGD------------IF----ALTANPKDPSS-LGTYTCEAVNCMG  517 (1075)
Q Consensus       485 ~~l~~~~------------~~----~l~i~~~~~~d-~G~Y~C~a~n~~g  517 (1075)
                      +++..+.            .+    .|.+......| .|.|+|.|.|...
T Consensus       163 ~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~  212 (240)
T 3q5y_A          163 KEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGL  212 (240)
T ss_dssp             EEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             EECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCC
Confidence            9986432            22    26777776777 6799999999754

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.58  E-value=1.7e-14  Score=152.08  Aligned_cols=163  Identities=21%  Similarity=0.254  Sum_probs=114.0

Q ss_pred             ecCceeeccCCeEEEEEEEecCC--CcEEEEEECC--Eec------C-----------CCCcEEEEEc--CCEEEEEEcc
Q psy16863        355 RLHDIAVKVGTRARLLVEIRSPT--EIKIHWYRND--RKL------E-----------ENKIYRTQHD--GNFYFIDLSS  411 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~g--~~l------~-----------~~~~~~~~~~--g~~~~L~I~~  411 (1075)
                      .+..+.+.+|++++|.|.+.+.+  .+.|.|||+.  ..+      .           ...|+.+..+  .....|.|.+
T Consensus        12 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   91 (261)
T 2xqy_G           12 QPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSS   91 (261)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcC
Confidence            34567899999999999998876  6899999973  211      1           1246666543  3556899999


Q ss_pred             cCCCCceeEEEEEEeCCCce---eeEEEEEeecCCCCCCCeee-eecceEEecCCeEEEEEEEECC-CCC-eEEEEeCCE
Q psy16863        412 VSLFDSGRWTCLAENAVGRS---HCSCELSVLVPKAYKAPFFT-KELEAILTEQGTVSLECKVMGI-PTP-QLIWYKDNK  485 (1075)
Q Consensus       412 v~~~d~G~Y~C~a~n~~g~~---~~s~~l~V~~~~~~~~p~~~-~~~~~~~~~g~~v~l~C~~~g~-p~~-~v~W~~~g~  485 (1075)
                      ++.+|+|.|.|.+.|..+..   ...+.|.|...+. .+|.+. ..+...+.+|+.++|.|.+.|. |.+ .|.|++++.
T Consensus        92 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~-~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~  170 (261)
T 2xqy_G           92 LTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKT-TAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSL  170 (261)
T ss_dssp             CCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCC-BCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGTC
T ss_pred             CCcccCeEEEEEEecCCCcceEECCCEEEEEccCCC-CCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCCC
Confidence            99999999999999864311   1335677765322 233333 2322335679999999999984 776 999999998


Q ss_pred             eccC---C-----CE----EEEEeCCCCCCCcEEEEEEEEecceee
Q psy16863        486 KIKA---G-----DI----FALTANPKDPSSLGTYTCEAVNCMGAA  519 (1075)
Q Consensus       486 ~l~~---~-----~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~~  519 (1075)
                      .+..   .     ..    ..|.|.....+| |.|+|.|.|.....
T Consensus       171 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~  215 (261)
T 2xqy_G          171 SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASST  215 (261)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTE
T ss_pred             cCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCc
Confidence            6521   0     22    257787777777 99999999976543

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.58  E-value=9e-15  Score=153.57  Aligned_cols=167  Identities=17%  Similarity=0.303  Sum_probs=114.9

Q ss_pred             CeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEE--------------CCEecCC----CCcEEEEEc-CCEEEEEEc
Q psy16863        350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYR--------------NDRKLEE----NKIYRTQHD-GNFYFIDLS  410 (1075)
Q Consensus       350 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k--------------~g~~l~~----~~~~~~~~~-g~~~~L~I~  410 (1075)
                      +.+...+..+.+.+|++++|.| ..+.+.+.|.|||              ++..+..    ..++.+..+ +....|.|.
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~   81 (245)
T 4ei6_B            3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQ   81 (245)
T ss_dssp             CCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEEC
T ss_pred             cceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEEC
Confidence            4456667788999999999999 6577889999999              3322211    156666543 345689999


Q ss_pred             ccCCCCceeEEEEEEeCC----CceeeEEEEEeecCC-CCCCCeee-eecc-eEEecCCeEEEEEEEEC-CCCC-eEEEE
Q psy16863        411 SVSLFDSGRWTCLAENAV----GRSHCSCELSVLVPK-AYKAPFFT-KELE-AILTEQGTVSLECKVMG-IPTP-QLIWY  481 (1075)
Q Consensus       411 ~v~~~d~G~Y~C~a~n~~----g~~~~s~~l~V~~~~-~~~~p~~~-~~~~-~~~~~g~~v~l~C~~~g-~p~~-~v~W~  481 (1075)
                      +++.+|+|.|.|.+.+..    +.......|.|.... ...+|.+. ..+. ..+.+|+.++|.|.+.| .|.+ .++|+
T Consensus        82 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~  161 (245)
T 4ei6_B           82 PTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW  161 (245)
T ss_dssp             SCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             CCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEE
Confidence            999999999999999632    223344566776421 11233332 2222 22456899999999998 4545 89999


Q ss_pred             eCCEeccCC----------------CEE----EEEeCCCCCCC-cEEEEEEEEecce
Q psy16863        482 KDNKKIKAG----------------DIF----ALTANPKDPSS-LGTYTCEAVNCMG  517 (1075)
Q Consensus       482 ~~g~~l~~~----------------~~~----~l~i~~~~~~d-~G~Y~C~a~n~~g  517 (1075)
                      |||+.+..+                ..+    .|.+......| .|.|+|.|.|...
T Consensus       162 ~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l  218 (245)
T 4ei6_B          162 VNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL  218 (245)
T ss_dssp             ETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             ECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCC
Confidence            999988642                222    26666666667 8999999999653

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.58  E-value=2.1e-14  Score=153.70  Aligned_cols=186  Identities=14%  Similarity=0.138  Sum_probs=123.5

Q ss_pred             cccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCC---------------Cc----cccCCCeEEEe--eCCe
Q psy16863        249 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG---------------DH----PIFGNRFRAIN--RDGR  307 (1075)
Q Consensus       249 ~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~---------------~~----~~~~~~~~~~~--~~~~  307 (1075)
                      +..+.+.+|+.++|.|.+.+..        .+...+.|++..               ..    .....++.+..  ..+.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~--------~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   78 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSEVT--------FSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRT   78 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECCSC--------CTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTE
T ss_pred             CCCEEECCCCcEEEEEEeeccC--------CCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCE
Confidence            5677899999999999987531        012233343311               10    01134677663  3556


Q ss_pred             EEEEEcccCCCCCEEEEEEEEeC---------CeeEEEEEEEEEec-C----------CCCCCeeeeecCceeeccCCeE
Q psy16863        308 TELNIRRVRRDDGGRYSVTASNE---------SGYSTAKFELSVES-Q----------VPDAPAFIRRLHDIAVKVGTRA  367 (1075)
Q Consensus       308 ~~L~I~~~~~~d~G~Y~C~a~n~---------~g~~~~~~~l~V~~-~----------~~~~p~~~~~~~~~~v~~G~~v  367 (1075)
                      .+|+|.+++.+|+|.|.|.+.|.         .......+.|.|.. .          ...+|.+...+. ..+.+|+++
T Consensus        79 ~sL~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v  157 (280)
T 3fku_X           79 AYMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTA  157 (280)
T ss_dssp             EEEEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCE
T ss_pred             EEEEECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCE
Confidence            79999999999999999999986         22233345666653 0          012455555555 889999999


Q ss_pred             EEEEEEec-CC-CcEEEEEEC--CEecC------------CCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCc-
Q psy16863        368 RLLVEIRS-PT-EIKIHWYRN--DRKLE------------ENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGR-  430 (1075)
Q Consensus       368 ~l~C~~~g-~p-~~~v~W~k~--g~~l~------------~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~-  430 (1075)
                      +|.|.+.+ .+ .+.+.|||.  +..+.            ...++.+..++....|.|.+++.+|+|.|.|.+.|..+. 
T Consensus       158 ~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~  237 (280)
T 3fku_X          158 TLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSSLSA  237 (280)
T ss_dssp             EEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETTTTE
T ss_pred             EEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCCCCc
Confidence            99999977 43 479999983  32221            135677777778888999999999999999999997632 


Q ss_pred             --eeeEEEEEeecCC
Q psy16863        431 --SHCSCELSVLVPK  443 (1075)
Q Consensus       431 --~~~s~~l~V~~~~  443 (1075)
                        ......|.|...+
T Consensus       238 ~~~g~~t~l~V~~~~  252 (280)
T 3fku_X          238 VVFGGGTKLTVLGQP  252 (280)
T ss_dssp             EEEBCCCEEEEC---
T ss_pred             eEECCCEEEEECCCC
Confidence              1223456665433

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.58  E-value=9.3e-14  Score=137.30  Aligned_cols=234  Identities=15%  Similarity=0.205  Sum_probs=152.6

Q ss_pred             ccceEeecCCeEEEEEEEecCCC---CceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCc
Q psy16863        557 VENVKAKIGTSAILECQVLVPPW---PRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGV  633 (1075)
Q Consensus       557 ~~~~~v~~G~~~~L~C~~~~~p~---p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  633 (1075)
                      |....+..|+.++|+|.+.+..+   +.+|+|+|++..+...           ...|.|..+...|+|.|+|.+.|..|.
T Consensus         9 P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGa-----------T~tLti~s~t~sdSG~YqCvVTDa~Gc   77 (304)
T 3shs_A            9 SNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN-----------TATLTVADATSENAGSYKVTVQDTDTM   77 (304)
T ss_dssp             ESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCC-----------SSEEEESSCCGGGCEEEEEEEEETTTC
T ss_pred             CCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCC-----------cceEEeeeccccCCeEEEEEEEECCCC
Confidence            44556778999999999987643   5799999999775421           127889999999999999999998887


Q ss_pred             eeeeeEEEEEeCCCCcCCCceeeccceeeecCCeEEEEEEE--ec-CC-----CCeEEEEECCEEcCCCCeEEEe--ecC
Q psy16863        634 KQFSAAYVHVLMPKNYRKPRFVESLKAVMTDDGLVSFECKV--VG-FP-----TPTLQWFKDNEELKPGDVYQLT--GTS  703 (1075)
Q Consensus       634 ~~~~~~~l~v~~p~~~~~p~~~~~~~~~~~~g~~~~l~C~v--~g-~p-----~p~v~W~k~g~~l~~~~~~~~~--~~~  703 (1075)
                      ...+. .+.|..+..+. ..+..+.......+..+.|.+.+  .| .|     ..+|+|+|++..+.....+...  ...
T Consensus        78 s~tSs-~VtVT~~a~l~-i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~IsgAq~lT~sS~Tat  155 (304)
T 3shs_A           78 TSVES-EVFLMEEAELI-VNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITIQEFTAD  155 (304)
T ss_dssp             CEEEC-CCEEECBCCEE-EEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEESSSEEEECSCCGG
T ss_pred             eeeee-eEEEeccCcee-EEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccCccccceeeEEec
Confidence            65332 34444432211 11111111123456688999988  54 44     4699999999988654444443  346


Q ss_pred             CCceEEEEEEecCce--EEEEEEEEEEeccccCchhhhhhhccCCCCCeEEeccceeeeecCCeEEEEEEEe--------
Q psy16863        704 SLGSYCCVAKNVMGK--AESSTQLTIEDIRNHLSEEDKLLLLTNNKAPKFIEGLKSCQATVNEEFKFTVQVS--------  773 (1075)
Q Consensus       704 d~G~Y~C~a~N~~g~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~v~--------  773 (1075)
                      ++|.|.|.+.|..+.  ++.++.+.+..+                  +.-..-+.+.++..|+.+.|.-.++        
T Consensus       156 eaG~YtV~VTn~~~~c~~s~~~~i~~~~~------------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (304)
T 3shs_A          156 KNGVYTVKVWGESEDSAASASTKIMLATM------------------NVDQDVVESKTVALGNEISLNYVVSEDIVGDSS  217 (304)
T ss_dssp             GCEEEEEEEESSSGGGCEEEEEEEEECEE------------------EEEECCCSEEEEETTSCEEECCEEEEECCSCCT
T ss_pred             CCeEEEEEEEcCCCCcccccceEEEEEcc------------------ccchhheEeehhhcCcEEEEEEEEeeccccCCC
Confidence            899999999998773  334455555432                  1112234566788899988877654        


Q ss_pred             cCCCC--eEEEEE--CCEE----eec-----CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEE
Q psy16863        774 ISPEP--KVSWFR--DDQQ----VVE-----SDNVKILKETLGVCHLKIHALEVADQAEWKCIAT  825 (1075)
Q Consensus       774 g~p~p--~v~W~k--~g~~----i~~-----~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~  825 (1075)
                      |-|..  .+.||.  .|+.    |..     -..+.+..+  |  +|.-..+..+|..+|.|+|.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~  278 (304)
T 3shs_A          218 GMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPD--G--HLFKESATYDDTAKFWCVAK  278 (304)
T ss_dssp             TCCEEEEEEEEEEECTTCCSCEEEESSSEECGGGEEECTT--S--CEEESSCCGGGCEEEEEEEE
T ss_pred             CCCceEEEEEEEEeecCccCchhhhhhhhhhhccceeCCC--c--ceeecccccccchheeeHHH
Confidence            23432  678975  3431    110     123444322  2  58888899999999999995

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.58  E-value=6.9e-15  Score=129.68  Aligned_cols=95  Identities=22%  Similarity=0.405  Sum_probs=84.3

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .||.|...+....+..|+++.|.|.+.|.|.|.+.|+|+|..+....+..+.....+...|.|.+++.+|+|.|+|.|.|
T Consensus         4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   83 (100)
T 2kdg_A            4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKN   83 (100)
T ss_dssp             EEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEc
Confidence            47788888888899999999999999999999999999999998776655555566678999999999999999999999


Q ss_pred             CCceEEEEEEEEEEe
Q psy16863        827 DFGQSITSCFLKLNV  841 (1075)
Q Consensus       827 ~~G~~~~s~~l~V~~  841 (1075)
                      ..|....++.|.|..
T Consensus        84 ~~g~~~~~~~l~V~~   98 (100)
T 2kdg_A           84 RAGEATFTVQLDVLA   98 (100)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCeEEEEEEEEEEe
Confidence            999998888888875

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.58  E-value=5.4e-15  Score=156.62  Aligned_cols=166  Identities=19%  Similarity=0.249  Sum_probs=103.9

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEEC--CEecC-----C--C-----------CcEEE-EEcCCEEEE
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DRKLE-----E--N-----------KIYRT-QHDGNFYFI  407 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~l~-----~--~-----------~~~~~-~~~g~~~~L  407 (1075)
                      +|.+...+..+.+.+|++++|.|.+.+.+.+.+.|||.  +..+.     .  .           .+... ........|
T Consensus         2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (259)
T 3omz_A            2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM   81 (259)
T ss_dssp             ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred             ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence            35566667788999999999999998888889999992  21110     0  0           11111 112233469


Q ss_pred             EEcccCCCCceeEEEEEEeCCC---ceeeEEEEEeecCCCCC------------CCeeeeecc-eEEecCCeEEEEEEEE
Q psy16863        408 DLSSVSLFDSGRWTCLAENAVG---RSHCSCELSVLVPKAYK------------APFFTKELE-AILTEQGTVSLECKVM  471 (1075)
Q Consensus       408 ~I~~v~~~d~G~Y~C~a~n~~g---~~~~s~~l~V~~~~~~~------------~p~~~~~~~-~~~~~g~~v~l~C~~~  471 (1075)
                      .|.+++.+|+|.|.|.+.|..+   .......|.|..+....            .|.+...+. ..+.+|++++|.|.+.
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~  161 (259)
T 3omz_A           82 ILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYE  161 (259)
T ss_dssp             EESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEE
T ss_pred             EECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECC
Confidence            9999999999999999999876   23345667777643211            234444444 3488999999999998


Q ss_pred             CC-CCCeEEEEeCC--Eec-----------------------cCCCEEEEEeCCCCCCCcEEEEEEEEe
Q psy16863        472 GI-PTPQLIWYKDN--KKI-----------------------KAGDIFALTANPKDPSSLGTYTCEAVN  514 (1075)
Q Consensus       472 g~-p~~~v~W~~~g--~~l-----------------------~~~~~~~l~i~~~~~~d~G~Y~C~a~n  514 (1075)
                      +. |.+.+.|+|++  ..+                       .......|.|.++..+|+|.|.|.+.+
T Consensus       162 ~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  230 (259)
T 3omz_A          162 TSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGE  230 (259)
T ss_dssp             CCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEES
T ss_pred             CccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeC
Confidence            75 77899999843  111                       011234599999999999999999975

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.57  E-value=1.7e-14  Score=155.29  Aligned_cols=172  Identities=13%  Similarity=0.157  Sum_probs=117.5

Q ss_pred             cccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCC--c-----------------cccCCCeEEEee--CCe
Q psy16863        249 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD--H-----------------PIFGNRFRAINR--DGR  307 (1075)
Q Consensus       249 ~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~--~-----------------~~~~~~~~~~~~--~~~  307 (1075)
                      +..+.+.+|+.++|.|.+.+.+.        ....+.|++.+.  .                 .....++.+..+  ++.
T Consensus        29 p~~~~v~~G~~v~L~C~~~~~~~--------~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~  100 (291)
T 2gki_A           29 SGPELVKPGASVKMSCKASGYTF--------TSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSST  100 (291)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCG--------GGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTE
T ss_pred             CCcEEecCCCCEEEEEeccCCcc--------cccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCE
Confidence            44677899999999998864220        012344443210  0                 001356665543  456


Q ss_pred             EEEEEcccCCCCCEEEEEEEEeCC-e--e--EEEEEEEEEecC------------CCCCCeeeeecCceeeccCCeEEEE
Q psy16863        308 TELNIRRVRRDDGGRYSVTASNES-G--Y--STAKFELSVESQ------------VPDAPAFIRRLHDIAVKVGTRARLL  370 (1075)
Q Consensus       308 ~~L~I~~~~~~d~G~Y~C~a~n~~-g--~--~~~~~~l~V~~~------------~~~~p~~~~~~~~~~v~~G~~v~l~  370 (1075)
                      .+|+|.+++.+|+|.|.|.+.|.. |  .  ....+.|.|...            ...++.+...+..+.+.+|++++|.
T Consensus       101 ~sL~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~  180 (291)
T 2gki_A          101 AYMELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMS  180 (291)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEE
T ss_pred             EEEEECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEE
Confidence            799999999999999999999974 2  1  112346777641            1124455555667889999999999


Q ss_pred             EEEecCCCc------EEEEEECC--EecC------------CCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCC
Q psy16863        371 VEIRSPTEI------KIHWYRND--RKLE------------ENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAV  428 (1075)
Q Consensus       371 C~~~g~p~~------~v~W~k~g--~~l~------------~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~  428 (1075)
                      |.+.+.+.+      .+.|||++  ..+.            ...++.+..++....|+|.+++.+|+|.|+|.|.|..
T Consensus       181 C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~  258 (291)
T 2gki_A          181 CKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYH  258 (291)
T ss_dssp             EEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             EEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence            999887755      89999963  2111            1456666666777789999999999999999999853

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.57  E-value=2.2e-14  Score=151.04  Aligned_cols=171  Identities=18%  Similarity=0.271  Sum_probs=116.4

Q ss_pred             ecCceeeccCCeEEEEEEEecC--CCcEEEEEECC--E---ec--------------CCCCcEEEEEc--CCEEEEEEcc
Q psy16863        355 RLHDIAVKVGTRARLLVEIRSP--TEIKIHWYRND--R---KL--------------EENKIYRTQHD--GNFYFIDLSS  411 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~~g~--p~~~v~W~k~g--~---~l--------------~~~~~~~~~~~--g~~~~L~I~~  411 (1075)
                      .+..+.+.+|++++|.|.+.+.  +...+.|||..  .   .+              ....|+.+..+  .....|+|.+
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (253)
T 3liz_H            6 ESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSS   85 (253)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECS
T ss_pred             cCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence            3456789999999999999773  36789999842  1   11              01245555543  3567799999


Q ss_pred             cCCCCceeEEEEEEeCC----CceeeEEEEEeecCCCCCCCeee-eecceEEecCCeEEEEEEEEC-CCCC-eEEEEeCC
Q psy16863        412 VSLFDSGRWTCLAENAV----GRSHCSCELSVLVPKAYKAPFFT-KELEAILTEQGTVSLECKVMG-IPTP-QLIWYKDN  484 (1075)
Q Consensus       412 v~~~d~G~Y~C~a~n~~----g~~~~s~~l~V~~~~~~~~p~~~-~~~~~~~~~g~~v~l~C~~~g-~p~~-~v~W~~~g  484 (1075)
                      ++.+|+|.|.|.+.|..    +.......|.|.... ..+|.+. ......+..|+.+.|.|.+.| .|.+ .+.|+++|
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~-~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~  164 (253)
T 3liz_H           86 LKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAK-TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS  164 (253)
T ss_dssp             CCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSC-CBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             CChhhCEEEEEEEecCCcceeeEECCCEEEEEeccC-CCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCC
Confidence            99999999999998862    222334567776322 2344444 223333567999999999998 7766 89999999


Q ss_pred             Eec--------cCCCEE----EEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEE
Q psy16863        485 KKI--------KAGDIF----ALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIA  527 (1075)
Q Consensus       485 ~~l--------~~~~~~----~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v  527 (1075)
                      ..+        .....+    .|.+......| |.|+|.|.|..+.......+.+
T Consensus       165 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~  218 (253)
T 3liz_H          165 LSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVP  218 (253)
T ss_dssp             BCTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCC
T ss_pred             eecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecC
Confidence            732        111333    57788888888 9999999999987766655544

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.57  E-value=1.6e-14  Score=124.34  Aligned_cols=89  Identities=19%  Similarity=0.228  Sum_probs=78.6

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .+|.|+..+++..+.+|+++.|.|.+.+ |+|.++|+|||.+|..+.++.+..+ .+.+.|.|.+++.+|+|.|+|.|.|
T Consensus         4 ~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~-g~~~~L~I~~v~~~D~G~Y~C~a~n   81 (93)
T 1waa_A            4 ALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIED-GKKHILILHNCQLGMTGEVSFQAAN   81 (93)
T ss_dssp             CCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEE-TTEEEEEECSCCGGGCEEEEEEETT
T ss_pred             CCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEE-CCEEEEEECCCChhhCEEEEEEECC
Confidence            6899999999999999999999999986 5689999999999999899887654 4567999999999999999999988


Q ss_pred             CCceEEEEEEEEEEe
Q psy16863        827 DFGQSITSCFLKLNV  841 (1075)
Q Consensus       827 ~~G~~~~s~~l~V~~  841 (1075)
                      .    ..++.|.|..
T Consensus        82 ~----~~sa~L~V~~   92 (93)
T 1waa_A           82 T----KSAANLKVKE   92 (93)
T ss_dssp             E----EEEEEEEEEC
T ss_pred             C----cEEEEEEEEc
Confidence            4    4678888874

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.57  E-value=1.6e-14  Score=150.96  Aligned_cols=175  Identities=15%  Similarity=0.122  Sum_probs=118.3

Q ss_pred             eeeeecCceeeccCCeEEEEEEEecC--CCcEEEEEECC--Ee---c-----------C---CCCcEEEEEcC--CEEEE
Q psy16863        351 AFIRRLHDIAVKVGTRARLLVEIRSP--TEIKIHWYRND--RK---L-----------E---ENKIYRTQHDG--NFYFI  407 (1075)
Q Consensus       351 ~~~~~~~~~~v~~G~~v~l~C~~~g~--p~~~v~W~k~g--~~---l-----------~---~~~~~~~~~~g--~~~~L  407 (1075)
                      .+...+..+.+.+|++++|.|.+.+.  +.+.+.|||++  ..   +           .   ...|+.+..+.  ....|
T Consensus         3 ~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   82 (242)
T 1hxm_B            3 HLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTL   82 (242)
T ss_dssp             EEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEE
T ss_pred             ccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEE
Confidence            34455667889999999999999875  57899999953  21   1           0   23566665433  46789


Q ss_pred             EEcccCCCCceeEEEEEEeCCC-c------eeeEEEEEeecCCC----CCCCeeeeecceEEecCCeEEEEEEEECC-CC
Q psy16863        408 DLSSVSLFDSGRWTCLAENAVG-R------SHCSCELSVLVPKA----YKAPFFTKELEAILTEQGTVSLECKVMGI-PT  475 (1075)
Q Consensus       408 ~I~~v~~~d~G~Y~C~a~n~~g-~------~~~s~~l~V~~~~~----~~~p~~~~~~~~~~~~g~~v~l~C~~~g~-p~  475 (1075)
                      .|.+++.+|+|.|.|.+.+..+ .      ......|.|...+.    ...|.+..+....+.+|+.++|.|.+.|. |.
T Consensus        83 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~  162 (242)
T 1hxm_B           83 TIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPD  162 (242)
T ss_dssp             EECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSC
T ss_pred             EECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECC
Confidence            9999999999999999998631 1      11245677775421    01112222222235579999999999986 64


Q ss_pred             -CeEEEEeCCE-eccCC---------CE----EEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEE
Q psy16863        476 -PQLIWYKDNK-KIKAG---------DI----FALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIA  527 (1075)
Q Consensus       476 -~~v~W~~~g~-~l~~~---------~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v  527 (1075)
                       +.|+|++++. .+...         ..    ..|.|..... + |.|+|.|.|..+.......+.+
T Consensus       163 ~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~  227 (242)
T 1hxm_B          163 VIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF  227 (242)
T ss_dssp             CEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred             CeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence             6999999987 55321         11    2577766654 4 9999999999887654444443

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.57  E-value=2.5e-15  Score=155.34  Aligned_cols=189  Identities=13%  Similarity=0.201  Sum_probs=104.5

Q ss_pred             EEEEEEEEeCCeeEEEEEEEEEecCCCCCCeeeeecCcee-eccCCeEEEEEEEecC---C-CcEEEEEECCEecCCCCc
Q psy16863        321 GRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIA-VKVGTRARLLVEIRSP---T-EIKIHWYRNDRKLEENKI  395 (1075)
Q Consensus       321 G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~-v~~G~~v~l~C~~~g~---p-~~~v~W~k~g~~l~~~~~  395 (1075)
                      |+|.|...|..+.  ......+.    .|+.++..+.... +..|+.++|.|.+.|.   | .+.|+|+|||.++.....
T Consensus         1 ~~~~~~~~~~~~~--c~~~~~~~----~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~   74 (240)
T 4acp_A            1 GTKSCDKTHTCPP--CPAPELLG----GPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKT   74 (240)
T ss_dssp             ----------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEE
T ss_pred             CceeeeeeecCCC--CCccccCC----CCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCcee
Confidence            7899999997664  12111111    2444555666666 6679999999999885   3 458999999998854321


Q ss_pred             E--EEEEcCCE---EEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEeecCCCCCCCeeeeecc-eEEecCCeEEEEEE
Q psy16863        396 Y--RTQHDGNF---YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELE-AILTEQGTVSLECK  469 (1075)
Q Consensus       396 ~--~~~~~g~~---~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~-~~~~~g~~v~l~C~  469 (1075)
                      .  ....++..   ..|.|.....+|.|.|+|+|.|..+.......+.... ....+|.+..... ....+|+.+.|.|.
T Consensus        75 ~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~-~~~~~P~V~v~~~~~~~~~g~~~~L~C~  153 (240)
T 4acp_A           75 KPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAK-GQPREPQVYTLPPSRDELTKNQVSLTCL  153 (240)
T ss_dssp             CCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCC-SCCBCCEEEEECCCGGGGGSSEEEEEEE
T ss_pred             ccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccC-CCCCCCEEEEECCChHHhcCCceEEEEE
Confidence            1  11123332   3678887777789999999999877543333332211 1123344433222 12234889999999


Q ss_pred             EEC-CCCC-eEEEEeCCEeccCC----------CEE----EEEeCCCCCCCcEEEEEEEEecc
Q psy16863        470 VMG-IPTP-QLIWYKDNKKIKAG----------DIF----ALTANPKDPSSLGTYTCEAVNCM  516 (1075)
Q Consensus       470 ~~g-~p~~-~v~W~~~g~~l~~~----------~~~----~l~i~~~~~~d~G~Y~C~a~n~~  516 (1075)
                      +.| +|.+ .++|+|||+++...          ..+    .|.+......+.|.|+|.|.|..
T Consensus       154 ~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~  216 (240)
T 4acp_A          154 VKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA  216 (240)
T ss_dssp             EEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             EeEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECC
Confidence            998 5654 89999999987421          111    34444444456799999999865

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.57  E-value=3.8e-14  Score=151.77  Aligned_cols=170  Identities=16%  Similarity=0.228  Sum_probs=118.5

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECC--Eec-------------C----CCCcEEEEE-cCCEEEEE
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRND--RKL-------------E----ENKIYRTQH-DGNFYFID  408 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g--~~l-------------~----~~~~~~~~~-~g~~~~L~  408 (1075)
                      .+.+...+..+.+.+|++++|.|.+.+.+.+.|.|||++  ..+             .    ...|+.+.. .+....|.
T Consensus        24 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~  103 (279)
T 2wbj_D           24 GAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT  103 (279)
T ss_dssp             CCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred             cceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence            455666777889999999999999988888899999964  111             0    134666654 34567899


Q ss_pred             EcccCCCCceeEEEEEEeCCC------ceeeEEEEEeecCCC-CCCCeeeee-cc-eEEecCCeEEEEEEEECC-CC-Ce
Q psy16863        409 LSSVSLFDSGRWTCLAENAVG------RSHCSCELSVLVPKA-YKAPFFTKE-LE-AILTEQGTVSLECKVMGI-PT-PQ  477 (1075)
Q Consensus       409 I~~v~~~d~G~Y~C~a~n~~g------~~~~s~~l~V~~~~~-~~~p~~~~~-~~-~~~~~g~~v~l~C~~~g~-p~-~~  477 (1075)
                      |.+++.+|+|.|+|.+.|..|      .......|.|..... ..+|.+... +. ..+.+|+.+.|.|.+.|. |+ +.
T Consensus       104 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~  183 (279)
T 2wbj_D          104 VTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVE  183 (279)
T ss_dssp             ESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEE
T ss_pred             EccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcE
Confidence            999999999999999999432      112235677765321 124444322 11 124478999999999986 44 69


Q ss_pred             EEEEeCCEeccCC----------------CEE----EEEeCCCCCC-CcEEEEEEEEeccee
Q psy16863        478 LIWYKDNKKIKAG----------------DIF----ALTANPKDPS-SLGTYTCEAVNCMGA  518 (1075)
Q Consensus       478 v~W~~~g~~l~~~----------------~~~----~l~i~~~~~~-d~G~Y~C~a~n~~g~  518 (1075)
                      |+|+|||+++..+                ..+    .|.|...... +.|.|+|.|.|....
T Consensus       184 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~  245 (279)
T 2wbj_D          184 LSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  245 (279)
T ss_dssp             EEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBC
T ss_pred             EEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCC
Confidence            9999999987532                112    3667666655 478999999997543

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.56  E-value=1.7e-14  Score=151.31  Aligned_cols=163  Identities=19%  Similarity=0.270  Sum_probs=101.0

Q ss_pred             ecCceeeccCCeEEEEEEEecCC--CcEEEEEECC--Eec------C-----------CCCcEEEEEc--CCEEEEEEcc
Q psy16863        355 RLHDIAVKVGTRARLLVEIRSPT--EIKIHWYRND--RKL------E-----------ENKIYRTQHD--GNFYFIDLSS  411 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~g--~~l------~-----------~~~~~~~~~~--g~~~~L~I~~  411 (1075)
                      .+..+.+.+|++++|.|.+.+.+  .+.+.|||.+  ..+      .           ...|+.+..+  +....|.|.+
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (257)
T 3bn9_D            6 QSGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSS   85 (257)
T ss_dssp             EECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEES
T ss_pred             ccCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECC
Confidence            34567899999999999998765  6789999953  111      0           1346666554  4567899999


Q ss_pred             cCCCCceeEEEEEEeCCCc-------------eeeEEEEEeecCCCCCCCeee-eecceEEecCCeEEEEEEEECC-CCC
Q psy16863        412 VSLFDSGRWTCLAENAVGR-------------SHCSCELSVLVPKAYKAPFFT-KELEAILTEQGTVSLECKVMGI-PTP  476 (1075)
Q Consensus       412 v~~~d~G~Y~C~a~n~~g~-------------~~~s~~l~V~~~~~~~~p~~~-~~~~~~~~~g~~v~l~C~~~g~-p~~  476 (1075)
                      ++.+|+|.|.|.+.|..|.             ......|.|...+. .+|.+. ..+...+.+|+.++|.|.+.|. |.+
T Consensus        86 v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~-~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~p  164 (257)
T 3bn9_D           86 LRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSAST-KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP  164 (257)
T ss_dssp             CCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCC-BCCEECCCCC-----------CCCEEEEEBSSC
T ss_pred             CChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCC-cCCcEEEecCcccccCCCcEEEEEEEeeEECCC
Confidence            9999999999999997651             11234677765221 233332 2222235678999999999985 777


Q ss_pred             -eEEEEeCCEecc---------CCCEE----EEEeCCCCCCCcEEEEEEEEecceee
Q psy16863        477 -QLIWYKDNKKIK---------AGDIF----ALTANPKDPSSLGTYTCEAVNCMGAA  519 (1075)
Q Consensus       477 -~v~W~~~g~~l~---------~~~~~----~l~i~~~~~~d~G~Y~C~a~n~~g~~  519 (1075)
                       .|+|++++..+.         .+..+    .|.|......| |.|+|.|.|.....
T Consensus       165 i~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~  220 (257)
T 3bn9_D          165 VTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  220 (257)
T ss_dssp             CEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGTE
T ss_pred             cEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCc
Confidence             999999998642         12222    35666666667 99999999976544

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.56  E-value=1.6e-14  Score=150.73  Aligned_cols=163  Identities=16%  Similarity=0.254  Sum_probs=108.0

Q ss_pred             eccceeeeecCCeEEEEEEEecCCCCeEEEEECC--EE---ee------------cCCcEEEEEeeCcEEEEEEccccCC
Q psy16863        753 EGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDD--QQ---VV------------ESDNVKILKETLGVCHLKIHALEVA  815 (1075)
Q Consensus       753 ~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g--~~---i~------------~~~~~~~~~~~~~~~~L~I~~~~~~  815 (1075)
                      ..+..+.+.+|+++.|.|.+. .+.+.+.|||++  ..   +.            ...++.+.....+.+.|.|.+++.+
T Consensus         4 q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~   82 (238)
T 1bec_A            4 QSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPS   82 (238)
T ss_dssp             EECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGG
T ss_pred             cCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcc
Confidence            344567799999999999996 568899999963  11   10            1345655433345779999999999


Q ss_pred             CCeEEEEEEEeCCc---eE--EEEEEEEEEecCC-CCCCeeee-ecc-eeecCCCeEEEEEEEEcc-CCC-eeEEEECCE
Q psy16863        816 DQAEWKCIATNDFG---QS--ITSCFLKLNVPKH-YKKPKFLE-ELK-AVLSEGGAVNLECKVIGV-PQP-TLKWFKDGR  885 (1075)
Q Consensus       816 D~G~Y~C~A~N~~G---~~--~~s~~l~V~~~~~-~~~p~~~~-~~~-~~~~~g~~~~L~C~v~g~-p~p-~v~W~k~g~  885 (1075)
                      |+|.|.|.+.|..+   ..  .....|.|..+.. ..+|.+.. ... ..+.+|+.++|.|.+.|. |.| .|+|+|||.
T Consensus        83 D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~  162 (238)
T 1bec_A           83 QTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGK  162 (238)
T ss_dssp             GCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETTE
T ss_pred             cCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECCE
Confidence            99999999999742   11  1234577765321 12444432 222 124579999999999986 655 899999999


Q ss_pred             EcCCCCee------------EEEE-CCCCce---e-eEEEEEEEEeCC
Q psy16863        886 ELKAGDIH------------KIIS-GEDGTC---C-LGIYTCEAHNCM  916 (1075)
Q Consensus       886 ~l~~~~~~------------~i~~-~~~~~~---d-~G~Y~C~a~N~~  916 (1075)
                      ++..+...            .+.. ......   | .|.|+|.|.|..
T Consensus       163 ~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~  210 (238)
T 1bec_A          163 EVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHG  210 (238)
T ss_dssp             EECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECC
T ss_pred             ECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCC
Confidence            98654211            1110 011111   2 578999999974

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=6.8e-15  Score=128.82  Aligned_cols=92  Identities=14%  Similarity=0.200  Sum_probs=82.5

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .||.|...+.+..+.+|+++.|.|.+  .|.|.++|+|||.+|..+.++.+... ...+.|.|.+++.+|+|.|+|.|.|
T Consensus         6 ~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N   82 (100)
T 2yuz_A            6 SGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQK-GRIHKLVIANALTEDEGDYVFAPDA   82 (100)
T ss_dssp             CCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEEC-SSEEEEEESSCCGGGCSEEEEEESS
T ss_pred             CCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEe-CCEEEEEECCCChhhCEEEEEEEcC
Confidence            58899999999999999999999999  79999999999999999999988654 3567899999999999999999999


Q ss_pred             CCceEEEEEEEEEEecC
Q psy16863        827 DFGQSITSCFLKLNVPK  843 (1075)
Q Consensus       827 ~~G~~~~s~~l~V~~~~  843 (1075)
                      .  ....++.|.|..||
T Consensus        83 ~--~~~~~a~L~V~~~P   97 (100)
T 2yuz_A           83 Y--NVTLPAKVHVISGP   97 (100)
T ss_dssp             S--CCCEEEEEEEECCS
T ss_pred             C--CeeEEEEEEEeCCC
Confidence            8  55678899998765

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.56  E-value=2e-14  Score=126.43  Aligned_cols=95  Identities=25%  Similarity=0.430  Sum_probs=83.3

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .||.|...+....+..|+++.|.|.+.|.|.|.+.|+|+|..+..+.+........+.+.|.|.+++.+|+|.|+|.|.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   83 (99)
T 1u2h_A            4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVN   83 (99)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEE
Confidence            47888888888899999999999999999999999999999998776554444455677899999999999999999999


Q ss_pred             CCceEEEEEEEEEEe
Q psy16863        827 DFGQSITSCFLKLNV  841 (1075)
Q Consensus       827 ~~G~~~~s~~l~V~~  841 (1075)
                      ..|....++.|.|..
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 1u2h_A           84 EYGARQCEARLEVRG   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCceeEEEEEEEEC
Confidence            999998888888763

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.56  E-value=7.5e-15  Score=156.47  Aligned_cols=167  Identities=15%  Similarity=0.225  Sum_probs=113.8

Q ss_pred             CeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEE--CCEec------------CC----CCcEEEEEc-CCEEEEEEc
Q psy16863        350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYR--NDRKL------------EE----NKIYRTQHD-GNFYFIDLS  410 (1075)
Q Consensus       350 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k--~g~~l------------~~----~~~~~~~~~-g~~~~L~I~  410 (1075)
                      +.+...+..+.+.+|++++|.|.+. .+.+.|.|||  .+..+            ..    ..|+.+..+ +....|.|.
T Consensus        27 ~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~  105 (268)
T 3pl6_D           27 AGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQ  105 (268)
T ss_dssp             SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEEC
T ss_pred             ceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEEC
Confidence            4455566778899999999999986 5678999999  22211            11    156665542 335679999


Q ss_pred             ccCCCCceeEEEEEEeC--CCceeeEEEEEeecCC-CCCCCeeee-ecc-eEEecCCeEEEEEEEECCCCC--eEEEEeC
Q psy16863        411 SVSLFDSGRWTCLAENA--VGRSHCSCELSVLVPK-AYKAPFFTK-ELE-AILTEQGTVSLECKVMGIPTP--QLIWYKD  483 (1075)
Q Consensus       411 ~v~~~d~G~Y~C~a~n~--~g~~~~s~~l~V~~~~-~~~~p~~~~-~~~-~~~~~g~~v~l~C~~~g~p~~--~v~W~~~  483 (1075)
                      +++.+|+|.|.|.+.|.  .+.......|.|.... ...+|.+.. .+. ..+.+|+.++|.|.+.|.|++  .++|+||
T Consensus       106 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~  185 (268)
T 3pl6_D          106 RTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN  185 (268)
T ss_dssp             SCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEES
T ss_pred             CCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEEC
Confidence            99999999999999984  2333344567776421 122343332 222 224568999999999986554  8999999


Q ss_pred             CEeccCC----------------CEE----EEEeCCCCCCC-cEEEEEEEEecce
Q psy16863        484 NKKIKAG----------------DIF----ALTANPKDPSS-LGTYTCEAVNCMG  517 (1075)
Q Consensus       484 g~~l~~~----------------~~~----~l~i~~~~~~d-~G~Y~C~a~n~~g  517 (1075)
                      |+++..+                ..+    .|.+...+..| +|.|+|.|.|...
T Consensus       186 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l  240 (268)
T 3pl6_D          186 GKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGL  240 (268)
T ss_dssp             SSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             CEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCC
Confidence            9988542                222    34566555566 9999999999754

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.56  E-value=2.6e-14  Score=129.39  Aligned_cols=96  Identities=16%  Similarity=0.208  Sum_probs=86.8

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .||.|+..+.+..+.+|+.+.|.|.+.|.|.|.++|+|+|..+..+.++.+... .+...|.|.+++.+|+|.|+|.|.|
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N   84 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENS-ENGSKLTILAARQEHCGCYTLLVEN   84 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEEC-SSEEEEEETTCCTTTCEEEEEEEEC
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEc-CCEEEEEECCCChhcCEEEEEEEEE
Confidence            589999888899999999999999999999999999999999988888887643 3467899999999999999999999


Q ss_pred             CCceEEEEEEEEEEecC
Q psy16863        827 DFGQSITSCFLKLNVPK  843 (1075)
Q Consensus       827 ~~G~~~~s~~l~V~~~~  843 (1075)
                      ..|....++.|.|..++
T Consensus        85 ~~g~~~~~~~l~V~~~p  101 (114)
T 2cqv_A           85 KLGSRQAQVNLTVVDKP  101 (114)
T ss_dssp             SSCEEECCEEEEEECSC
T ss_pred             CCCcEEEEEEEEEECCC
Confidence            99999889999988654

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.55  E-value=5.3e-15  Score=153.21  Aligned_cols=167  Identities=16%  Similarity=0.266  Sum_probs=110.6

Q ss_pred             CCee-eeecCceeeccCCeEEEEEEEec-CCC--cEEEEEECCEec-CCCCcEE-EEEcCC---EEEEEEcccCCCCcee
Q psy16863        349 APAF-IRRLHDIAVKVGTRARLLVEIRS-PTE--IKIHWYRNDRKL-EENKIYR-TQHDGN---FYFIDLSSVSLFDSGR  419 (1075)
Q Consensus       349 ~p~~-~~~~~~~~v~~G~~v~l~C~~~g-~p~--~~v~W~k~g~~l-~~~~~~~-~~~~g~---~~~L~I~~v~~~d~G~  419 (1075)
                      +|.+ +..+....+.+|+.++|.|.+.| .|.  ..|+|+|+|..+ ....... ...+|.   ...|.|.++..+|+|.
T Consensus        12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~   91 (231)
T 2w59_A           12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGER   91 (231)
T ss_dssp             CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCC
T ss_pred             CCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCE
Confidence            3443 34556667889999999999988 463  499999999887 4332222 112333   2369999999999999


Q ss_pred             EEEEEEeCCCceeeEEEEEeecCC-CCCCCeeee-ecceEEecCCeEEEEEEEECC-CC-CeEEEEeCCEeccCCC----
Q psy16863        420 WTCLAENAVGRSHCSCELSVLVPK-AYKAPFFTK-ELEAILTEQGTVSLECKVMGI-PT-PQLIWYKDNKKIKAGD----  491 (1075)
Q Consensus       420 Y~C~a~n~~g~~~~s~~l~V~~~~-~~~~p~~~~-~~~~~~~~g~~v~l~C~~~g~-p~-~~v~W~~~g~~l~~~~----  491 (1075)
                      |+|.|.|..+...  ..+.|.... ...+|.+.. .+......++.+.|.|.+.|. |+ +.|+|+|||+++..+.    
T Consensus        92 Y~C~~~~~~~~~~--~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~  169 (231)
T 2w59_A           92 FTCTVQHEELPLP--LSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTT  169 (231)
T ss_dssp             EEEEEECTTCSSC--EEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEEC
T ss_pred             EEEEEEcCCCCCc--eEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccC
Confidence            9999999876533  334443321 112333322 111111235679999999985 43 6999999999874321    


Q ss_pred             -----------------EE----EEEeCCCCCCCcEEEEEEEEecce
Q psy16863        492 -----------------IF----ALTANPKDPSSLGTYTCEAVNCMG  517 (1075)
Q Consensus       492 -----------------~~----~l~i~~~~~~d~G~Y~C~a~n~~g  517 (1075)
                                       .+    .|.|......|.|.|+|.|.|...
T Consensus       170 ~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l  216 (231)
T 2w59_A          170 AVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEAL  216 (231)
T ss_dssp             CCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             ccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCC
Confidence                             11    355555556678999999999764

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.55  E-value=9.7e-15  Score=148.60  Aligned_cols=155  Identities=14%  Similarity=0.241  Sum_probs=96.0

Q ss_pred             ccCCeEEEEEEEecCC----CcEEEEEECCEecCCCCc--EEEEEcCCEE---EEEEcccCCCCceeEEEEEEeCCCcee
Q psy16863        362 KVGTRARLLVEIRSPT----EIKIHWYRNDRKLEENKI--YRTQHDGNFY---FIDLSSVSLFDSGRWTCLAENAVGRSH  432 (1075)
Q Consensus       362 ~~G~~v~l~C~~~g~p----~~~v~W~k~g~~l~~~~~--~~~~~~g~~~---~L~I~~v~~~d~G~Y~C~a~n~~g~~~  432 (1075)
                      .+|++++|.|.+.|.+    .+.|+|||+|.++.....  .....+|...   .|.|.....+|+|.|+|.|.|..+...
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~   95 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP   95 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcc
Confidence            7999999999998864    359999999988754321  1112233322   233434444459999999999987653


Q ss_pred             eEEEEEeecCCCCCCCeeeee-cceEEecCCeEEEEEEEECC-CC-CeEEEEeCCEeccCC----------CEE----EE
Q psy16863        433 CSCELSVLVPKAYKAPFFTKE-LEAILTEQGTVSLECKVMGI-PT-PQLIWYKDNKKIKAG----------DIF----AL  495 (1075)
Q Consensus       433 ~s~~l~V~~~~~~~~p~~~~~-~~~~~~~g~~v~l~C~~~g~-p~-~~v~W~~~g~~l~~~----------~~~----~l  495 (1075)
                      .+..+.+. .....+|.+... .......|+.+.|.|.+.|. |+ +.|+|+|||.++...          ..+    .|
T Consensus        96 ~~~~v~~~-~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l  174 (207)
T 1l6x_A           96 IEKTISKA-KGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKL  174 (207)
T ss_dssp             EEEEECCC-CSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEE
T ss_pred             eEEEeccC-CCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCCCCEEEEEEE
Confidence            33333210 011223343322 11112246679999999985 54 399999999987531          111    23


Q ss_pred             EeCCCCCCCcEEEEEEEEecce
Q psy16863        496 TANPKDPSSLGTYTCEAVNCMG  517 (1075)
Q Consensus       496 ~i~~~~~~d~G~Y~C~a~n~~g  517 (1075)
                      .+...+..|.|.|+|.|.|...
T Consensus       175 ~i~~~~~~~~g~YtC~a~n~~l  196 (207)
T 1l6x_A          175 TVDKSRWQQGNVFSCSVMHEAL  196 (207)
T ss_dssp             EEEHHHHHTTCCEEEEEECTTS
T ss_pred             EECHHHcCCCCEEEEEEEcCCc
Confidence            3433334568999999999753

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.54  E-value=1e-13  Score=148.25  Aligned_cols=193  Identities=17%  Similarity=0.151  Sum_probs=119.8

Q ss_pred             cceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCCC--c-----------------eeccCcEEEE--ecCCe
Q psy16863        142 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD--H-----------------PIFGNRFRAI--NRDGR  200 (1075)
Q Consensus       142 ~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~~--~-----------------~~~~~~~~~~--~~~~~  200 (1075)
                      +.++.+.+|++++|.|.+.+..        .+...+.|++...  .                 ....+|+.+.  ...+.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~--------~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   78 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSEVT--------FSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRT   78 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECCSC--------CTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTE
T ss_pred             CCCEEECCCCcEEEEEEeeccC--------CCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCE
Confidence            5667889999999999987631        1234566665321  0                 0112466665  34556


Q ss_pred             EEEEEceeccCCCeEEEEEEEcC---------ceeEEEEEEEeeec-c----------CCCCCccccccccceeecccee
Q psy16863        201 TELNIRRVRRDDGGRYSVTASNE---------SGYSTAKFELSVES-Q----------VPDAPAFIRRLHDIAVKVGTRA  260 (1075)
Q Consensus       201 ~~L~I~~~~~~D~G~Y~C~a~n~---------~g~~~~~~~l~V~~-~----------~~~~p~~~~~~~~~~v~~g~~~  260 (1075)
                      ..|.|.+++.+|+|.|.|.+.|.         .........|.|.. .          ...++.+...+. ..+.+|+++
T Consensus        79 ~sL~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v  157 (280)
T 3fku_X           79 AYMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTA  157 (280)
T ss_dssp             EEEEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCE
T ss_pred             EEEEECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCE
Confidence            79999999999999999999986         22223345566653 0          012344555555 889999999


Q ss_pred             EEEEEecC-CCceEEEEecCCCeeeEEecC--CCc------------cccCCCeEEEeeCCeEEEEEcccCCCCCEEEEE
Q psy16863        261 RLLVEIRS-PTEIKCQFDLNNTIPFSFRAQ--GDH------------PIFGNRFRAINRDGRTELNIRRVRRDDGGRYSV  325 (1075)
Q Consensus       261 ~l~c~~~~-~~~~~c~~~~~~~~~~~w~~~--~~~------------~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C  325 (1075)
                      +|.|.+.. ..         ....+.|++.  +..            .....++.+...+...+|+|.+++.+|+|.|.|
T Consensus       158 ~L~C~~~~~~~---------~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C  228 (280)
T 3fku_X          158 TLTCTGNSNNV---------GNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYC  228 (280)
T ss_dssp             EEEEECCCCCC---------CTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEE
T ss_pred             EEEEEecCCCC---------CCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEE
Confidence            99999875 21         0123334331  111            111467777777788899999999999999999


Q ss_pred             EEEeCCe---eEEEEEEEEEecCCCCCCee
Q psy16863        326 TASNESG---YSTAKFELSVESQVPDAPAF  352 (1075)
Q Consensus       326 ~a~n~~g---~~~~~~~l~V~~~~~~~p~~  352 (1075)
                      .+.|..+   .....+.|.|......+|.+
T Consensus       229 ~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v  258 (280)
T 3fku_X          229 STWDSSLSAVVFGGGTKLTVLGQPKAAPSA  258 (280)
T ss_dssp             EEEETTTTEEEEBCCCEEEEC---------
T ss_pred             EEecCCCCceEECCCEEEEECCCCCCCCcE
Confidence            9998651   12334566665433334443

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.54  E-value=1.3e-14  Score=173.73  Aligned_cols=155  Identities=17%  Similarity=0.321  Sum_probs=112.3

Q ss_pred             eeeeecCCeEEEEEEE-ecCCCCeEEEEECCEEeec------------CCcEEEEEeeCcEEEEEEccccCCCCeEEEEE
Q psy16863        757 SCQATVNEEFKFTVQV-SISPEPKVSWFRDDQQVVE------------SDNVKILKETLGVCHLKIHALEVADQAEWKCI  823 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v-~g~p~p~v~W~k~g~~i~~------------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~  823 (1075)
                      ...+..|++++|.|.+ .+.|.+.|+|+|++.++..            ..+..+.  ..+  .|.|.+++.+|+|.|+|.
T Consensus       375 ~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~--~L~i~~v~~~D~G~Y~C~  450 (581)
T 3o3u_N          375 NITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVL--PNG--SLFLPAVGIQDEGIFRCQ  450 (581)
T ss_dssp             EEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEEC--TTS--CEEESSCCGGGCEEEEEE
T ss_pred             ccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEc--CCc--eEEEeccccccCeEEEEE
Confidence            4668899999999999 7889999999998763211            2233332  222  699999999999999999


Q ss_pred             EEeCCceE-EEEEEEEEEecCCCCCCeeeeecceeecCCC-eEEEEEEEEc-cCCCeeEEEECCEEcCCCCee-------
Q psy16863        824 ATNDFGQS-ITSCFLKLNVPKHYKKPKFLEELKAVLSEGG-AVNLECKVIG-VPQPTLKWFKDGRELKAGDIH-------  893 (1075)
Q Consensus       824 A~N~~G~~-~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~-~~~L~C~v~g-~p~p~v~W~k~g~~l~~~~~~-------  893 (1075)
                      |.|..|.. ...+.|.|..++.  .|.+...... +.+|+ .+.|.|.+.| .|.|.|+|+|||.+|......       
T Consensus       451 ~~n~~~~~~~~~~~l~V~~~~~--~p~i~~~~~~-~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~  527 (581)
T 3o3u_N          451 AMNRNGKETKSNYRVRVYQIPG--KPEIVDSASE-LTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQT  527 (581)
T ss_dssp             EECTTSCEEEEEEEEEEEBCCC--CCEEESCCSE-ECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEE
T ss_pred             EEcCCCceeEEEEEEEEEcCCC--CCEEEcCCcc-cccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeee
Confidence            99999987 6778888887553  4544433333 44554 5577999998 599999999999998643211       


Q ss_pred             -------------EEEECCCC-ceeeEEEEEEEEeCCee
Q psy16863        894 -------------KIISGEDG-TCCLGIYTCEAHNCMGT  918 (1075)
Q Consensus       894 -------------~i~~~~~~-~~d~G~Y~C~a~N~~G~  918 (1075)
                                   .|.+.... ..+.|.|+|.|+|.++.
T Consensus       528 ~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~  566 (581)
T 3o3u_N          528 RRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR  566 (581)
T ss_dssp             EECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred             EEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence                         23333333 23478899999998753

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.54  E-value=2.2e-14  Score=124.23  Aligned_cols=89  Identities=15%  Similarity=0.244  Sum_probs=76.9

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECC--EEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEE
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDD--QQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT  825 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g--~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~  825 (1075)
                      +|.|...+....+..|+.+.|.|.+.|.|.|.++|+|+|  .++.....+.   ...+...|.|.+++.+|+|.|+|.|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~---~~~~~~~L~i~~~~~~D~G~Y~C~a~   78 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVD---AKSSTTSIFFPSAKRADSGNYKLKVK   78 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEE---EETTEEEEECTTBCGGGCEEEEEEEE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEE---ecCCEEEEEECCCChhcCEEEEEEEE
Confidence            688887888889999999999999999999999999999  8886553222   23456789999999999999999999


Q ss_pred             eCCceEEEEEEEEE
Q psy16863        826 NDFGQSITSCFLKL  839 (1075)
Q Consensus       826 N~~G~~~~s~~l~V  839 (1075)
                      |..|.+..++.|.|
T Consensus        79 N~~G~~~~~~~l~V   92 (93)
T 1wit_A           79 NELGEDEAIFEVIV   92 (93)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             cCCCeEEEEEEEEE
Confidence            99999888888776

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=1.5e-14  Score=130.01  Aligned_cols=97  Identities=28%  Similarity=0.443  Sum_probs=87.4

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeec-CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVE-SDNVKILKETLGVCHLKIHALEVADQAEWKCIAT  825 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~  825 (1075)
                      .+|.|...+....+.+|+.+.|.|.+.|.|.|.|+|+|+|..+.. ..++.+.....+.+.|.|.+++.+|+|.|+|.|.
T Consensus         7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   86 (110)
T 2dm2_A            7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAA   86 (110)
T ss_dssp             CCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEE
T ss_pred             CCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEE
Confidence            688998888889999999999999999999999999999999875 5677777665677899999999999999999999


Q ss_pred             eCCceEEEEEEEEEEecC
Q psy16863        826 NDFGQSITSCFLKLNVPK  843 (1075)
Q Consensus       826 N~~G~~~~s~~l~V~~~~  843 (1075)
                      |..|....++.|.|..++
T Consensus        87 N~~g~~~~~~~l~V~~~~  104 (110)
T 2dm2_A           87 NPQGRISCTGRLMVQAVN  104 (110)
T ss_dssp             CTTCCEEECCCEEEECCS
T ss_pred             ECCCeEEEEEEEEEECCC
Confidence            999999888999988754

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=2e-14  Score=125.85  Aligned_cols=94  Identities=16%  Similarity=0.260  Sum_probs=85.4

Q ss_pred             CCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEe
Q psy16863        347 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       347 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      ..+|.|...+.+..+.+|+.+.|.|.+  .|.+.++|||||..|..+.++.+..++..+.|.|.++..+|+|.|+|.|.|
T Consensus         5 ~~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   82 (100)
T 2yuz_A            5 SSGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDA   82 (100)
T ss_dssp             SCCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESS
T ss_pred             CCCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcC
Confidence            357889999999999999999999999  778899999999999999999999999999999999999999999999999


Q ss_pred             CCCceeeEEEEEeecCCC
Q psy16863        427 AVGRSHCSCELSVLVPKA  444 (1075)
Q Consensus       427 ~~g~~~~s~~l~V~~~~~  444 (1075)
                      .  ....++.|.|..+|.
T Consensus        83 ~--~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           83 Y--NVTLPAKVHVISGPS   98 (100)
T ss_dssp             S--CCCEEEEEEEECCSC
T ss_pred             C--CeeEEEEEEEeCCCC
Confidence            7  556788899987763

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.54  E-value=9.6e-14  Score=146.15  Aligned_cols=191  Identities=10%  Similarity=0.092  Sum_probs=119.6

Q ss_pred             cccceeeccceeEEEEEecCC----CceEEEEe-cCCCeeeE-Eec-CCCcc----ccCCCeEEEee--CCeEEEEEccc
Q psy16863        249 LHDIAVKVGTRARLLVEIRSP----TEIKCQFD-LNNTIPFS-FRA-QGDHP----IFGNRFRAINR--DGRTELNIRRV  315 (1075)
Q Consensus       249 ~~~~~v~~g~~~~l~c~~~~~----~~~~c~~~-~~~~~~~~-w~~-~~~~~----~~~~~~~~~~~--~~~~~L~I~~~  315 (1075)
                      +..+.+.+|+.++|.|.+.+.    ..+.|.-. .+....+. +.. .++..    ....|+.+..+  .+..+|+|.++
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (253)
T 3liz_H            7 SGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSL   86 (253)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            456678999999999998652    22222211 11121111 111 11110    11356776644  35678999999


Q ss_pred             CCCCCEEEEEEEEeC----CeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEec-CCCc-EEEEEECCEe
Q psy16863        316 RRDDGGRYSVTASNE----SGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS-PTEI-KIHWYRNDRK  389 (1075)
Q Consensus       316 ~~~d~G~Y~C~a~n~----~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g-~p~~-~v~W~k~g~~  389 (1075)
                      +.+|+|.|.|.+.|.    .+.....+.|.|......+|.+........+..|+.++|.|.+.+ .|.+ .+.|+|+|..
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~  166 (253)
T 3liz_H           87 KSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS  166 (253)
T ss_dssp             CGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             ChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCee
Confidence            999999999999885    233344457777644445777765555556778999999999987 6655 9999999974


Q ss_pred             cCCCCcEEEEEcCCE---EEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEee
Q psy16863        390 LEENKIYRTQHDGNF---YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL  440 (1075)
Q Consensus       390 l~~~~~~~~~~~g~~---~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~  440 (1075)
                      +...........+..   ..|.|.....+| |.|+|.|.|..+.......+.+.
T Consensus       167 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~  219 (253)
T 3liz_H          167 SGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR  219 (253)
T ss_dssp             TTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             cceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence            421100001112221   368899999999 99999999998877666666554

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.53  E-value=5.8e-14  Score=123.45  Aligned_cols=94  Identities=23%  Similarity=0.505  Sum_probs=85.0

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .+|.|...+.+..+..|+.+.|.|.+.|.|.|.+.|+|+|..+..+.++.+... .+.+.|.|.+++.+|+|.|+|.|.|
T Consensus         5 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n   83 (99)
T 3puc_A            5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSED-KGGFFLEIHKTDTSDSGLYTCTVKN   83 (99)
T ss_dssp             EEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEE-TTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEe-CCEEEEEECCCCcccCEEEEEEEEe
Confidence            578888888889999999999999999999999999999999998888887644 4567899999999999999999999


Q ss_pred             CCceEEEEEEEEEEe
Q psy16863        827 DFGQSITSCFLKLNV  841 (1075)
Q Consensus       827 ~~G~~~~s~~l~V~~  841 (1075)
                      ..|....++.|.|..
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 3puc_A           84 SAGSVSSSCKLTIKA   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCcEeEEEEEEEEe
Confidence            999998888888863

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.53  E-value=4.7e-14  Score=121.34  Aligned_cols=90  Identities=19%  Similarity=0.217  Sum_probs=80.2

Q ss_pred             CCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEe
Q psy16863        347 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       347 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      +.+|.|+..+.+..+.+|+.++|.|.+.+ +++.|+|||||.+|..+.++.+..++..+.|.|.+++.+|+|.|+|.|.|
T Consensus         3 ~~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n   81 (93)
T 1waa_A            3 MALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAN   81 (93)
T ss_dssp             CCCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETT
T ss_pred             CCCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECC
Confidence            46889999999999999999999999976 45789999999999998999999999999999999999999999999976


Q ss_pred             CCCceeeEEEEEeec
Q psy16863        427 AVGRSHCSCELSVLV  441 (1075)
Q Consensus       427 ~~g~~~~s~~l~V~~  441 (1075)
                      .    ..++.|.|..
T Consensus        82 ~----~~sa~L~V~~   92 (93)
T 1waa_A           82 T----KSAANLKVKE   92 (93)
T ss_dssp             E----EEEEEEEEEC
T ss_pred             C----cEEEEEEEEc
Confidence            3    4577787764

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.53  E-value=4.2e-14  Score=135.67  Aligned_cols=100  Identities=26%  Similarity=0.455  Sum_probs=89.3

Q ss_pred             CCCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEE
Q psy16863        746 NKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT  825 (1075)
Q Consensus       746 ~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~  825 (1075)
                      ..+|.|...+.+..+..|+.+.|.|.+.|.|.|.|+|+|+|..+..+.++.+.....+...|.|.+++.+|+|.|+|.|.
T Consensus        39 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  118 (154)
T 1fhg_A           39 HVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV  118 (154)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEE
Confidence            36889999888999999999999999999999999999999999988888887665667899999999999999999999


Q ss_pred             eCCceEEEEEEEEEEecCCC
Q psy16863        826 NDFGQSITSCFLKLNVPKHY  845 (1075)
Q Consensus       826 N~~G~~~~s~~l~V~~~~~~  845 (1075)
                      |.+|....++.|.|..++.+
T Consensus       119 N~~G~~~~~~~l~V~~~p~~  138 (154)
T 1fhg_A          119 NSLGEATCTAELLVETMGKE  138 (154)
T ss_dssp             ETTEEEEEEEEEEEECC---
T ss_pred             ECCCeEEEEEEEEEeCcCcC
Confidence            99999999999999876543

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.53  E-value=2.1e-14  Score=151.30  Aligned_cols=160  Identities=14%  Similarity=0.195  Sum_probs=102.7

Q ss_pred             cceeeeecCCeEEEEEEEecCCCCeEEEEEC--CEE---ee--c----------CC-cEEEEEeeCcEEEEEEccccCCC
Q psy16863        755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQQ---VV--E----------SD-NVKILKETLGVCHLKIHALEVAD  816 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~~---i~--~----------~~-~~~~~~~~~~~~~L~I~~~~~~D  816 (1075)
                      +....+.+|++++|.|.+.+.+.+.+.|||.  +..   +.  .          .. ++.+.......  |.|.+++.+|
T Consensus         8 p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~--L~I~~v~~~D   85 (253)
T 3to4_D            8 PRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE--LRLQVANMSQ   85 (253)
T ss_dssp             CSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC--CEEEEESCSS
T ss_pred             CCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe--EEEccCChhh
Confidence            4456789999999999999899999999982  111   10  0          11 44443322222  9999999999


Q ss_pred             CeEEEEEEEeCCc---e---EEEEEEEEEEecC-CCCCCeeeeec-c-eeecCCCeEEEEEEEEc-cCCC-eeEEEECCE
Q psy16863        817 QAEWKCIATNDFG---Q---SITSCFLKLNVPK-HYKKPKFLEEL-K-AVLSEGGAVNLECKVIG-VPQP-TLKWFKDGR  885 (1075)
Q Consensus       817 ~G~Y~C~A~N~~G---~---~~~s~~l~V~~~~-~~~~p~~~~~~-~-~~~~~g~~~~L~C~v~g-~p~p-~v~W~k~g~  885 (1075)
                      +|.|.|.+.|..+   .   ......|.|.... ...+|.+.... . ..+..|+.++|.|.+.| .|.+ .|+|+|||.
T Consensus        86 sG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~  165 (253)
T 3to4_D           86 GRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGK  165 (253)
T ss_dssp             CEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTE
T ss_pred             CeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECCE
Confidence            9999999998654   1   1123466666321 22344433211 1 12335789999999999 5666 899999999


Q ss_pred             EcCCCC----------------ee----EEEECCCCcee-eEEEEEEEEeCC
Q psy16863        886 ELKAGD----------------IH----KIISGEDGTCC-LGIYTCEAHNCM  916 (1075)
Q Consensus       886 ~l~~~~----------------~~----~i~~~~~~~~d-~G~Y~C~a~N~~  916 (1075)
                      ++..+.                .+    .+.+......| .|.|+|.|.|..
T Consensus       166 ~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~  217 (253)
T 3to4_D          166 EVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG  217 (253)
T ss_dssp             EECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred             ECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence            986521                12    12222111223 679999999964

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.53  E-value=2e-14  Score=151.29  Aligned_cols=168  Identities=14%  Similarity=0.192  Sum_probs=108.9

Q ss_pred             eEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECC--E--E-ee------------cCCcEEEEEeeCcEEEEEEccc
Q psy16863        750 KFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDD--Q--Q-VV------------ESDNVKILKETLGVCHLKIHAL  812 (1075)
Q Consensus       750 ~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g--~--~-i~------------~~~~~~~~~~~~~~~~L~I~~~  812 (1075)
                      .+...+....+.+|++++|.|.+. .+.+.+.|||+.  .  . +.            ...++.+.....+...|.|.++
T Consensus         5 ~v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v   83 (252)
T 1oga_E            5 GITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSA   83 (252)
T ss_dssp             CEECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSC
T ss_pred             cceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcC
Confidence            344556667899999999999996 568899999953  1  1 11            1245555432234568999999


Q ss_pred             cCCCCeEEEEEEEeCC---ceEEEEEEEEEEecC-CCCCCeeeee-cc-eeecCCCeEEEEEEEEcc-CC-CeeEEEECC
Q psy16863        813 EVADQAEWKCIATNDF---GQSITSCFLKLNVPK-HYKKPKFLEE-LK-AVLSEGGAVNLECKVIGV-PQ-PTLKWFKDG  884 (1075)
Q Consensus       813 ~~~D~G~Y~C~A~N~~---G~~~~s~~l~V~~~~-~~~~p~~~~~-~~-~~~~~g~~~~L~C~v~g~-p~-p~v~W~k~g  884 (1075)
                      +.+|+|.|.|.+.|..   ........|.|..+. ...+|.+... .. ..+.+|+.++|.|.+.|. |. +.|+|+|||
T Consensus        84 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g  163 (252)
T 1oga_E           84 QKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG  163 (252)
T ss_dssp             CSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred             ChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECC
Confidence            9999999999999962   111123456776421 1234544321 11 124468999999999986 65 489999999


Q ss_pred             EEcCCCCe----------------eE----EEECCCCc-eeeEEEEEEEEeCCee
Q psy16863        885 RELKAGDI----------------HK----IISGEDGT-CCLGIYTCEAHNCMGT  918 (1075)
Q Consensus       885 ~~l~~~~~----------------~~----i~~~~~~~-~d~G~Y~C~a~N~~G~  918 (1075)
                      .++..+..                +.    |.+..... .|.|.|+|.|.|..+.
T Consensus       164 ~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~  218 (252)
T 1oga_E          164 KEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  218 (252)
T ss_dssp             EEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             EECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            98865321                11    11111111 1468999999997654

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.53  E-value=8.7e-15  Score=151.98  Aligned_cols=166  Identities=12%  Similarity=0.173  Sum_probs=105.7

Q ss_pred             eeeeecCcee-eccCCeEEEEEEEecC---CCc-EEEEEECCEecCCCCc-EEEE-EcC---CEEEEEEcccCCCCceeE
Q psy16863        351 AFIRRLHDIA-VKVGTRARLLVEIRSP---TEI-KIHWYRNDRKLEENKI-YRTQ-HDG---NFYFIDLSSVSLFDSGRW  420 (1075)
Q Consensus       351 ~~~~~~~~~~-v~~G~~v~l~C~~~g~---p~~-~v~W~k~g~~l~~~~~-~~~~-~~g---~~~~L~I~~v~~~d~G~Y  420 (1075)
                      .++.++.... +.+|++++|.|.+.+.   |.+ .|+|||++..+..... .... .++   ....|.|.+++.+|+|.|
T Consensus        18 v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y   97 (239)
T 1i1c_A           18 VFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTF   97 (239)
T ss_dssp             EEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCE
T ss_pred             EEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeE
Confidence            3344444334 7899999999999876   655 9999999976643211 0011 112   124699999999999999


Q ss_pred             EEEEEeCCCceeeEEEEEeecCCCCCCCeeeeecce-EEecCCeEEEEEEEEC-CCC-CeEEEEeCCEeccCC-------
Q psy16863        421 TCLAENAVGRSHCSCELSVLVPKAYKAPFFTKELEA-ILTEQGTVSLECKVMG-IPT-PQLIWYKDNKKIKAG-------  490 (1075)
Q Consensus       421 ~C~a~n~~g~~~~s~~l~V~~~~~~~~p~~~~~~~~-~~~~g~~v~l~C~~~g-~p~-~~v~W~~~g~~l~~~-------  490 (1075)
                      +|.|.|..|.......+... .....+|.+...... ....|+.+.|.|.+.| .|+ ..|+|+|||+++...       
T Consensus        98 ~C~~~~~~~~~~~~~~v~~~-~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~  176 (239)
T 1i1c_A           98 KCKVNSGAFPAPIEKSISKP-EGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTM  176 (239)
T ss_dssp             EEEEECSSSSSCEEEEECCC-SSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEE
T ss_pred             EEEEecccCCCCcEEEEecC-CCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceE
Confidence            99999998864332223210 111233444322221 1235789999999998 455 389999999987532       


Q ss_pred             ---CEE----EEEeCCCCCCCcEEEEEEEEecce
Q psy16863        491 ---DIF----ALTANPKDPSSLGTYTCEAVNCMG  517 (1075)
Q Consensus       491 ---~~~----~l~i~~~~~~d~G~Y~C~a~n~~g  517 (1075)
                         ..+    .|.+...+..|.|.|+|.|.|...
T Consensus       177 ~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l  210 (239)
T 1i1c_A          177 DTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGL  210 (239)
T ss_dssp             CTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCC
Confidence               111    233333333468999999999764

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.52  E-value=2e-14  Score=148.82  Aligned_cols=164  Identities=17%  Similarity=0.166  Sum_probs=107.1

Q ss_pred             eccceeeeecCCeEEEEEEEecC--CCCeEEEEECC--E---Eee-------------cCCcEEEEEee-CcEEEEEEcc
Q psy16863        753 EGLKSCQATVNEEFKFTVQVSIS--PEPKVSWFRDD--Q---QVV-------------ESDNVKILKET-LGVCHLKIHA  811 (1075)
Q Consensus       753 ~~~~~~~~~~g~~~~l~C~v~g~--p~p~v~W~k~g--~---~i~-------------~~~~~~~~~~~-~~~~~L~I~~  811 (1075)
                      ..+..+.+.+|++++|.|.+.+.  +.+.+.|||..  .   .+.             ...|+.+..+. .+.+.|.|.+
T Consensus         6 q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (230)
T 1ypz_F            6 QPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYS   85 (230)
T ss_dssp             CSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECS
T ss_pred             ccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECc
Confidence            34456678999999999999875  66799999852  1   110             13456555432 2578999999


Q ss_pred             ccCCCCeEEEEEEEeC--Cce--EEEEEEEEEEecC------CCCCCeeeeecceeecCCCeEEEEEEEEcc-CC-CeeE
Q psy16863        812 LEVADQAEWKCIATND--FGQ--SITSCFLKLNVPK------HYKKPKFLEELKAVLSEGGAVNLECKVIGV-PQ-PTLK  879 (1075)
Q Consensus       812 ~~~~D~G~Y~C~A~N~--~G~--~~~s~~l~V~~~~------~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~-p~-p~v~  879 (1075)
                      ++.+|+|.|.|.+.|.  ...  ......|.|....      ....|.+..+....+..|+.++|.|.+.|. |. +.|+
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~v~  165 (230)
T 1ypz_F           86 LEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIRVY  165 (230)
T ss_dssp             CCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCEEE
T ss_pred             CChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeEEE
Confidence            9999999999999985  111  1123467776211      011222222111224568899999999987 75 5999


Q ss_pred             EEE-CCEEcCCC---------Cee----EEEECCCCceeeEEEEEEEEeCCee
Q psy16863        880 WFK-DGRELKAG---------DIH----KIISGEDGTCCLGIYTCEAHNCMGT  918 (1075)
Q Consensus       880 W~k-~g~~l~~~---------~~~----~i~~~~~~~~d~G~Y~C~a~N~~G~  918 (1075)
                      |+| ||.+|..+         ..+    .|.+.....  .|.|+|.|.|..+.
T Consensus       166 W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~--~~~ytC~v~~~~~~  216 (230)
T 1ypz_F          166 WKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM--GKEHRCIVKHENNK  216 (230)
T ss_dssp             EECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT--TSCEEEEEECSSCT
T ss_pred             EEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC--CCEEEEEEEECCCC
Confidence            999 88877532         111    233333322  39999999998775

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.52  E-value=1.4e-13  Score=124.55  Aligned_cols=97  Identities=19%  Similarity=0.331  Sum_probs=89.1

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      .+|.|...+.+..+.+|+.++|.|.+.|.|.+.|+|+|+|..+..+.++.+...+....|.|.+++.+|+|.|+|.|.|.
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   85 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENK   85 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECS
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEEC
Confidence            58999988899999999999999999999999999999999998888888887777889999999999999999999999


Q ss_pred             CCceeeEEEEEeecCCC
Q psy16863        428 VGRSHCSCELSVLVPKA  444 (1075)
Q Consensus       428 ~g~~~~s~~l~V~~~~~  444 (1075)
                      .|....++.|.|...|.
T Consensus        86 ~g~~~~~~~l~V~~~p~  102 (114)
T 2cqv_A           86 LGSRQAQVNLTVVDKPD  102 (114)
T ss_dssp             SCEEECCEEEEEECSCS
T ss_pred             CCcEEEEEEEEEECCCC
Confidence            99998889999886653

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.52  E-value=7.5e-14  Score=125.16  Aligned_cols=93  Identities=15%  Similarity=0.213  Sum_probs=75.2

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEee------CcEEEEEEccccCCCCeEE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKET------LGVCHLKIHALEVADQAEW  820 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~------~~~~~L~I~~~~~~D~G~Y  820 (1075)
                      .||.+  .+..  ...+..+.|.|.+.|.|.|+|+|+|||++|..+.++.+....      .....|.|.+++..|+|.|
T Consensus         3 ~pP~I--~l~~--~~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   78 (126)
T 1he7_A            3 MPASV--QLHT--AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNY   78 (126)
T ss_dssp             CCCCC--CCCC--CCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEE
T ss_pred             CCCEE--EccC--CccCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEE
Confidence            56765  2222  336678999999999999999999999999988776554322      1245799999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEEecC
Q psy16863        821 KCIATNDFGQSITSCFLKLNVPK  843 (1075)
Q Consensus       821 ~C~A~N~~G~~~~s~~l~V~~~~  843 (1075)
                      +|+|.|.+|.+..++.|.|...|
T Consensus        79 tC~A~N~~G~~~~t~~l~v~~~P  101 (126)
T 1he7_A           79 TLLAANPFGQASASIMAAFMDNP  101 (126)
T ss_dssp             EEEEEETTEEEEEEEEECCCSCT
T ss_pred             EEEEEECCCeEEEEEEEEEEcCC
Confidence            99999999999988888887654

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.51  E-value=1.7e-14  Score=120.98  Aligned_cols=82  Identities=18%  Similarity=0.414  Sum_probs=70.5

Q ss_pred             cceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEE
Q psy16863        755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITS  834 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s  834 (1075)
                      +.++.+.+|+++.|.|.+.+ |.|.|+|||||++|..+.++.+...+ +.+.|.|.+++.+|+|.|+|.|.|.    ..+
T Consensus         3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~n~----~~~   76 (84)
T 2lu7_A            3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAG-ARQVLRVQGARSGDAGEYLCDAPQD----SRI   76 (84)
T ss_dssp             CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECS-SCEEEEESSCSSTTCEEEEEECTTT----CEE
T ss_pred             CeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecC-CeEEEEecCCCCcccEEEEEEECCE----EEE
Confidence            56778999999999999976 99999999999999999999887654 4678999999999999999999664    557


Q ss_pred             EEEEEEec
Q psy16863        835 CFLKLNVP  842 (1075)
Q Consensus       835 ~~l~V~~~  842 (1075)
                      +.|.|++|
T Consensus        77 a~l~V~eP   84 (84)
T 2lu7_A           77 FLVSVEEP   84 (84)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEECC
Confidence            77888654

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.51  E-value=1.2e-13  Score=122.45  Aligned_cols=94  Identities=20%  Similarity=0.375  Sum_probs=87.1

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      .+|.|...+.+..+.+|+.+.|.|.+.|.|.+.|.|+|+|..+..+.++.+..++....|.|.++..+|+|.|+|.|.|.
T Consensus         7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   86 (103)
T 3qp3_A            7 HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNY   86 (103)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeC
Confidence            47888888889999999999999999999999999999999999888888888888889999999999999999999999


Q ss_pred             CCceeeEEEEEeec
Q psy16863        428 VGRSHCSCELSVLV  441 (1075)
Q Consensus       428 ~g~~~~s~~l~V~~  441 (1075)
                      .|....++.|.|..
T Consensus        87 ~G~~~~~~~l~V~~  100 (103)
T 3qp3_A           87 KGEASDYATLDVTG  100 (103)
T ss_dssp             TEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEEEEC
Confidence            99998888888864

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=2.1e-14  Score=129.17  Aligned_cols=97  Identities=27%  Similarity=0.358  Sum_probs=87.6

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .+|.|...+....+.+|+.+.|.|.+.|.|.|.|.|+|+|..+....+..+.....+...|.|.+++.+|+|.|+|.|.|
T Consensus         8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   87 (110)
T 2dm3_A            8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATN   87 (110)
T ss_dssp             CCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEEC
T ss_pred             CCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEEC
Confidence            68999999999999999999999999999999999999999998777766665555667899999999999999999999


Q ss_pred             CCceEEEEEEEEEEecC
Q psy16863        827 DFGQSITSCFLKLNVPK  843 (1075)
Q Consensus       827 ~~G~~~~s~~l~V~~~~  843 (1075)
                      ..|....++.|.|..++
T Consensus        88 ~~g~~~~~~~l~V~~~p  104 (110)
T 2dm3_A           88 RAGQNSFSLELVVAAKE  104 (110)
T ss_dssp             SSCEEEECCEEEEECCC
T ss_pred             CCCEEEEEEEEEEeCCC
Confidence            99999889999998765

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.50  E-value=7.4e-14  Score=123.20  Aligned_cols=94  Identities=17%  Similarity=0.210  Sum_probs=73.6

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEE--eeC--cEEEEEEccccCCCCeEEEE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILK--ETL--GVCHLKIHALEVADQAEWKC  822 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~--~~~--~~~~L~I~~~~~~D~G~Y~C  822 (1075)
                      .||.+... ..  ...++.+.|.|.+.|.|.|.++|+|||++|..+.++....  ...  ....|.|.+++.+|+|.|+|
T Consensus         3 ~pP~i~~~-~~--~~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   79 (103)
T 1wwb_X            3 FAPTITFL-ES--PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTL   79 (103)
T ss_dssp             CCCCCCCC-CC--CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEE
T ss_pred             CCCEEEec-cC--ceECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEE
Confidence            46765422 21  3467889999999999999999999999998876643321  111  13459999999999999999


Q ss_pred             EEEeCCceEEEEEEEEEEecC
Q psy16863        823 IATNDFGQSITSCFLKLNVPK  843 (1075)
Q Consensus       823 ~A~N~~G~~~~s~~l~V~~~~  843 (1075)
                      .|.|.+|.+..++.|.|..+|
T Consensus        80 ~A~N~~G~~~~~~~l~V~~~P  100 (103)
T 1wwb_X           80 IAKNEYGKDEKQISAHFMGWP  100 (103)
T ss_dssp             EEECSSCEEEEEEEECCSCCC
T ss_pred             EEEeCCCcEeEEEEEEECCCC
Confidence            999999999999988887544

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.49  E-value=4.9e-14  Score=118.13  Aligned_cols=82  Identities=17%  Similarity=0.316  Sum_probs=73.0

Q ss_pred             cCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEE
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC  435 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~  435 (1075)
                      +.++.+.+|+++.|.|.+.+ |.+.|+|||||.+|..+.++.+..++..+.|.|.++..+|+|.|+|.|    |....++
T Consensus         3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a----~n~~~~a   77 (84)
T 2lu7_A            3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDA----PQDSRIF   77 (84)
T ss_dssp             CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEEC----TTTCEEE
T ss_pred             CeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEE----CCEEEEE
Confidence            56788999999999999965 788999999999999999999999999899999999999999999998    4456778


Q ss_pred             EEEeecC
Q psy16863        436 ELSVLVP  442 (1075)
Q Consensus       436 ~l~V~~~  442 (1075)
                      .|.|..|
T Consensus        78 ~l~V~eP   84 (84)
T 2lu7_A           78 LVSVEEP   84 (84)
T ss_dssp             EEEECCC
T ss_pred             EEEEECC
Confidence            8888654

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.48  E-value=9.1e-15  Score=149.55  Aligned_cols=164  Identities=12%  Similarity=0.065  Sum_probs=103.6

Q ss_pred             eEEeccceeeeecCCeEEEEEEEecCCC---CeEEEEECCEEeecCCc-EEE-EEee--CcEEEEEEccccCCCCeEEEE
Q psy16863        750 KFIEGLKSCQATVNEEFKFTVQVSISPE---PKVSWFRDDQQVVESDN-VKI-LKET--LGVCHLKIHALEVADQAEWKC  822 (1075)
Q Consensus       750 ~~~~~~~~~~~~~g~~~~l~C~v~g~p~---p~v~W~k~g~~i~~~~~-~~~-~~~~--~~~~~L~I~~~~~~D~G~Y~C  822 (1075)
                      .++..+....+.+|++++|.|.+.|.++   +.|+|  ++.++..... ... ...+  .....|.|.+++.+|+|.|+|
T Consensus         6 v~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y~C   83 (214)
T 1ow0_A            6 LSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTC   83 (214)
T ss_dssp             CEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB--SSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEE
T ss_pred             EEEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE--cCCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCeEEE
Confidence            3445566677889999999999999754   69999  4444422100 000 0000  024579999999999999999


Q ss_pred             EEEeCCceEEEEEEEEEEecCCCCCCeeee-ecc-eeecCCCeEEEEEEEEcc-CC-CeeEEEECCEEcCCCCee--EEE
Q psy16863        823 IATNDFGQSITSCFLKLNVPKHYKKPKFLE-ELK-AVLSEGGAVNLECKVIGV-PQ-PTLKWFKDGRELKAGDIH--KII  896 (1075)
Q Consensus       823 ~A~N~~G~~~~s~~l~V~~~~~~~~p~~~~-~~~-~~~~~g~~~~L~C~v~g~-p~-p~v~W~k~g~~l~~~~~~--~i~  896 (1075)
                      .|.|..+.......+.+  .....+|.+.. ... ..+..|+.++|.|.+.|. |. +.|+|+|||.+|..+...  ...
T Consensus        84 ~~~~~~~~~~~~~~i~~--~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~  161 (214)
T 1ow0_A           84 TAAYPESKTPLTATLSK--SGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASR  161 (214)
T ss_dssp             EECCSSCSSCEEEEEEC--CSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCE
T ss_pred             EEecCCCCCceeEeecc--CCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecCCc
Confidence            99998875433333322  11223454422 211 125678999999999996 43 489999999998654211  011


Q ss_pred             EC---CCCc--------------eeeEEEEEEEEeCCe
Q psy16863        897 SG---EDGT--------------CCLGIYTCEAHNCMG  917 (1075)
Q Consensus       897 ~~---~~~~--------------~d~G~Y~C~a~N~~G  917 (1075)
                      ..   .+++              .+.|.|+|.|.|..-
T Consensus       162 ~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l  199 (214)
T 1ow0_A          162 QEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL  199 (214)
T ss_dssp             ECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred             ccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCC
Confidence            22   2221              136899999999753

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.48  E-value=4.2e-13  Score=117.22  Aligned_cols=89  Identities=17%  Similarity=0.326  Sum_probs=78.3

Q ss_pred             EEeccceeeeecCCeEEEEEEEecC-CCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCc
Q psy16863        751 FIEGLKSCQATVNEEFKFTVQVSIS-PEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFG  829 (1075)
Q Consensus       751 ~~~~~~~~~~~~g~~~~l~C~v~g~-p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G  829 (1075)
                      +...+.+..+.+|+.+.|.|.+.|. |.|.++|+|++..+..+.++.+.. ..+...|.|.+++.+|+|.|+|.|.|..|
T Consensus         4 v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   82 (97)
T 2bk8_A            4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITY-EDGVAILYVKDITKLDDGTYRCKVVNDYG   82 (97)
T ss_dssp             EECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEE-ETTEEEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             eeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEE-cCCeEEEEEecCChhhCeEEEEEEECCCC
Confidence            3445667889999999999999997 999999999999999888888754 34677999999999999999999999999


Q ss_pred             eEEEEEEEEEE
Q psy16863        830 QSITSCFLKLN  840 (1075)
Q Consensus       830 ~~~~s~~l~V~  840 (1075)
                      ....++.|.|.
T Consensus        83 ~~~~~~~l~V~   93 (97)
T 2bk8_A           83 EDSSYAELFVK   93 (97)
T ss_dssp             EEEEEEEEEET
T ss_pred             eEeEEEEEEEE
Confidence            99888888775

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.48  E-value=2.5e-13  Score=119.32  Aligned_cols=94  Identities=21%  Similarity=0.479  Sum_probs=86.2

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      .+|.|...+.+..+.+|+++.|.|.+.+.|.+.+.|+|+|..+..+.++.+..++..+.|.|.++..+|+|.|+|.|.|.
T Consensus         5 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~   84 (99)
T 3puc_A            5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNS   84 (99)
T ss_dssp             EEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeC
Confidence            47788888888999999999999999999999999999999999888998888888889999999999999999999999


Q ss_pred             CCceeeEEEEEeec
Q psy16863        428 VGRSHCSCELSVLV  441 (1075)
Q Consensus       428 ~g~~~~s~~l~V~~  441 (1075)
                      .|....++.|.|..
T Consensus        85 ~g~~~~~~~l~V~~   98 (99)
T 3puc_A           85 AGSVSSSCKLTIKA   98 (99)
T ss_dssp             TEEEEEEEEEEEEC
T ss_pred             CCcEeEEEEEEEEe
Confidence            99988888887753

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.48  E-value=1.6e-13  Score=123.14  Aligned_cols=96  Identities=16%  Similarity=0.250  Sum_probs=77.9

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecC---CCCeEEEEECCE-Eee--cCCcEEEEEeeC-----cEEEEEEccccCCC
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSIS---PEPKVSWFRDDQ-QVV--ESDNVKILKETL-----GVCHLKIHALEVAD  816 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~---p~p~v~W~k~g~-~i~--~~~~~~~~~~~~-----~~~~L~I~~~~~~D  816 (1075)
                      .|.|+..++++.+.+|++++|.|.+.|.   |.|.|.|||++. ++.  .+.++.+.....     ..+.|+|.+++.+|
T Consensus         7 ~~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   86 (126)
T 2dav_A            7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNF   86 (126)
T ss_dssp             SCSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTS
T ss_pred             ccEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCccc
Confidence            4678888999999999999999999875   899999999752 121  234555532211     25789999999999


Q ss_pred             CeEEEEEEEeCCceEEEEEEEEEEe-cC
Q psy16863        817 QAEWKCIATNDFGQSITSCFLKLNV-PK  843 (1075)
Q Consensus       817 ~G~Y~C~A~N~~G~~~~s~~l~V~~-~~  843 (1075)
                      +|.|+|+|+|..|..++++.|.|++ |+
T Consensus        87 aG~Y~Cevsn~~g~~~~~~~L~V~~~~~  114 (126)
T 2dav_A           87 AGNYRCEVTYKDKFDSCSFDLEVHESTG  114 (126)
T ss_dssp             CEEEEEEEECSSCEEEECCEEEEECCCC
T ss_pred             CEEEEEEEEeCCCcEEEEEEEEEEecCC
Confidence            9999999999999999999999998 54

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=1.6e-13  Score=124.96  Aligned_cols=96  Identities=13%  Similarity=0.176  Sum_probs=80.6

Q ss_pred             CCCCeEEec---cceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEE
Q psy16863        746 NKAPKFIEG---LKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKC  822 (1075)
Q Consensus       746 ~~~p~~~~~---~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C  822 (1075)
                      ..+|.|...   .....+.+|+.+.|.|.+.|.|.|.++|+|+|..+. ..++.+.. ..+...|.|.+++.+|+|.|+|
T Consensus        19 ~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C   96 (118)
T 2e7c_A           19 AEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRT-SDFDTVFFVRQAARSDSGEYEL   96 (118)
T ss_dssp             SEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEE-CSSEEEEEESSCCTTTCEEEEE
T ss_pred             ccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEE-CCCeEEEEECCCChhcCEEEEE
Confidence            457777543   456789999999999999999999999999999997 45566543 3456789999999999999999


Q ss_pred             EEEeCCceEEEEEEEEEEecC
Q psy16863        823 IATNDFGQSITSCFLKLNVPK  843 (1075)
Q Consensus       823 ~A~N~~G~~~~s~~l~V~~~~  843 (1075)
                      .|.|..|....++.|.|..+|
T Consensus        97 ~a~N~~G~~~~~~~l~V~~~P  117 (118)
T 2e7c_A           97 SVQIENMKDTATIRIRVVEKA  117 (118)
T ss_dssp             EEECSSCEECCEEEEEEECCC
T ss_pred             EEEeCCCeEEEEEEEEEEcCC
Confidence            999999998888888887643

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.48  E-value=3.1e-13  Score=118.72  Aligned_cols=94  Identities=22%  Similarity=0.293  Sum_probs=82.9

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEE-EcCCEEEEEEcccCCCCceeEEEEEEe
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQ-HDGNFYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~-~~g~~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      .+|.|...+.+..+.+|+.+.|.|.+.|.|.+.|.|+|+|..+....++.+. ..+....|.|.++..+|+|.|+|.|.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   83 (99)
T 1g1c_A            4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   83 (99)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEE
Confidence            4788888888999999999999999999999999999999999877766543 356677899999999999999999999


Q ss_pred             CCCceeeEEEEEeec
Q psy16863        427 AVGRSHCSCELSVLV  441 (1075)
Q Consensus       427 ~~g~~~~s~~l~V~~  441 (1075)
                      ..|....++.|.|..
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           84 IAGETSSHAFLLVQA   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCcEEEEEEEEEec
Confidence            999998888888753

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.47  E-value=8.2e-14  Score=118.83  Aligned_cols=87  Identities=15%  Similarity=0.338  Sum_probs=73.7

Q ss_pred             CCCeeeeecCceee--ccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEE
Q psy16863        348 DAPAFIRRLHDIAV--KVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAE  425 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v--~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~  425 (1075)
                      .||.|+.++.+..+  .+|+++.|.|.+.+ |.+.|+|||||++|..+.++.+..+|..+.|.|.++..+|+|.|+|.|.
T Consensus         3 ~P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~   81 (91)
T 2lvc_A            3 MPVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAG   81 (91)
T ss_dssp             CCCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECS
T ss_pred             CCcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEc
Confidence            36777777766544  68999999999955 7789999999999999999999999999999999999999999999985


Q ss_pred             eCCCceeeEEEEEe
Q psy16863        426 NAVGRSHCSCELSV  439 (1075)
Q Consensus       426 n~~g~~~~s~~l~V  439 (1075)
                      |    .+.++.|+|
T Consensus        82 n----~~~~~~ltV   91 (91)
T 2lvc_A           82 D----ECAYFTVTI   91 (91)
T ss_dssp             S----CEEEEEEEC
T ss_pred             c----eEEEEEEEC
Confidence            5    455666654

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.47  E-value=2.1e-13  Score=152.45  Aligned_cols=157  Identities=17%  Similarity=0.154  Sum_probs=99.8

Q ss_pred             eecCCeEEEEEEEecC-CC---CeEEEEECCEEeecCCcE-EEEEee---CcEEEEEEccccCCCCeEEEEEEEeCCceE
Q psy16863        760 ATVNEEFKFTVQVSIS-PE---PKVSWFRDDQQVVESDNV-KILKET---LGVCHLKIHALEVADQAEWKCIATNDFGQS  831 (1075)
Q Consensus       760 ~~~g~~~~l~C~v~g~-p~---p~v~W~k~g~~i~~~~~~-~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~  831 (1075)
                      +..|++++|.|.+.|. |.   ..|+|+|++..+...... ......   .....|.|..++.+|+|.|+|.|.|..+..
T Consensus       180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  259 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA  259 (376)
T ss_pred             eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence            7889999999999987 33   379999999765322100 000000   023479999999999999999999988754


Q ss_pred             EEEEEEEEEecCCCCCCeeeeecce-eecCCCeEEEEEEEEccC--CCeeEEEECCEEcCCCCeeE--------------
Q psy16863        832 ITSCFLKLNVPKHYKKPKFLEELKA-VLSEGGAVNLECKVIGVP--QPTLKWFKDGRELKAGDIHK--------------  894 (1075)
Q Consensus       832 ~~s~~l~V~~~~~~~~p~~~~~~~~-~~~~g~~~~L~C~v~g~p--~p~v~W~k~g~~l~~~~~~~--------------  894 (1075)
                      .....+.+. .....+|.+...... ...+|+.++|.|.+.|.+  .+.|+|+|||+++.......              
T Consensus       260 ~~~~~v~~~-~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~  338 (376)
T 2aty_A          260 PIEKTISKT-KGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVYSK  338 (376)
T ss_pred             ceEEEEcCC-CCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCCEEEEEE
Confidence            333333221 111234444322222 233588999999999963  45899999999875321111              


Q ss_pred             EEECCCCceeeEEEEEEEEeCCe
Q psy16863        895 IISGEDGTCCLGIYTCEAHNCMG  917 (1075)
Q Consensus       895 i~~~~~~~~d~G~Y~C~a~N~~G  917 (1075)
                      |.+......|.|.|+|.|.|..-
T Consensus       339 L~i~~~~~~~~~~YtC~v~h~~l  361 (376)
T 2aty_A          339 LNVQKSNWEAGNTFTCSVLHEGL  361 (376)
T ss_pred             EEEcHHHhCCCCcEEEEEEeCCC
Confidence            11222222357999999999653

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.47  E-value=7.8e-14  Score=118.94  Aligned_cols=87  Identities=22%  Similarity=0.352  Sum_probs=71.6

Q ss_pred             CCCeEEecccee--eeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEE
Q psy16863        747 KAPKFIEGLKSC--QATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIA  824 (1075)
Q Consensus       747 ~~p~~~~~~~~~--~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A  824 (1075)
                      .||.|+.++.+.  .+.+|+.+.|.|.+.+ |.|.++|+|||++|..+.++.+..+ ++.+.|.|.+++.+|+|.|+|.|
T Consensus         3 ~P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~-~~~~~L~I~~v~~~D~G~Y~C~a   80 (91)
T 2lvc_A            3 MPVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENE-GPHRRLVLPATQPSDGGEFQCVA   80 (91)
T ss_dssp             CCCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEE-TTEEEEEESSCCGGGCSEEEEEC
T ss_pred             CCcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEec-CCeEEEEeCCCChhhcEEEEEEE
Confidence            467777776664  4568999999999975 8899999999999999999988765 45789999999999999999999


Q ss_pred             EeCCceEEEEEEEEE
Q psy16863        825 TNDFGQSITSCFLKL  839 (1075)
Q Consensus       825 ~N~~G~~~~s~~l~V  839 (1075)
                      .|.    ..++.|+|
T Consensus        81 ~n~----~~~~~ltV   91 (91)
T 2lvc_A           81 GDE----CAYFTVTI   91 (91)
T ss_dssp             SSC----EEEEEEEC
T ss_pred             cce----EEEEEEEC
Confidence            775    44555553

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.47  E-value=4.6e-14  Score=125.36  Aligned_cols=95  Identities=17%  Similarity=0.323  Sum_probs=84.9

Q ss_pred             CCCCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEE
Q psy16863        745 NNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIA  824 (1075)
Q Consensus       745 ~~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A  824 (1075)
                      ...+|.|...+.+..+.+|+++.|.|.+.|.|.|.+.|+|+|..+..+.++.+... .....|.|.+++.+|+|.|+|.|
T Consensus        11 ~~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a   89 (106)
T 1nct_A           11 TTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTT-KYKSTFEISSVQASDEGNYSVVV   89 (106)
T ss_dssp             SSCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEEC-SSEEEEEECCCCSSCCSEEEECC
T ss_pred             CCCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEEC-CCEEEEEECcCCchhCEEEEEEE
Confidence            34789999999999999999999999999999999999999999988888887653 34678999999999999999999


Q ss_pred             EeCCceEEEEEEEEEE
Q psy16863        825 TNDFGQSITSCFLKLN  840 (1075)
Q Consensus       825 ~N~~G~~~~s~~l~V~  840 (1075)
                      .|..|....++.|.|.
T Consensus        90 ~N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           90 ENSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             BCSSCBCCEEEEEEEC
T ss_pred             EeCCCeEEEEEEEEEE
Confidence            9999998888887764

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=1.2e-13  Score=122.53  Aligned_cols=96  Identities=10%  Similarity=0.186  Sum_probs=77.7

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecC---CCCeEEEEECCE-Eeec--CCcEEEEEeeC-----cEEEEEEccccCC
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSIS---PEPKVSWFRDDQ-QVVE--SDNVKILKETL-----GVCHLKIHALEVA  815 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~---p~p~v~W~k~g~-~i~~--~~~~~~~~~~~-----~~~~L~I~~~~~~  815 (1075)
                      ..+.|+..++++.+.+|++++|.|.+.|.   |.|.|+|||++. ++..  +.++.+.....     ..+.|+|.+++.+
T Consensus        11 ~~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   90 (118)
T 2edn_A           11 PTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLG   90 (118)
T ss_dssp             CSSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTT
T ss_pred             CcceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChh
Confidence            46678888999999999999999999985   789999999752 2222  34555432211     2578999999999


Q ss_pred             CCeEEEEEEEeCCceEEEEEEEEEEec
Q psy16863        816 DQAEWKCIATNDFGQSITSCFLKLNVP  842 (1075)
Q Consensus       816 D~G~Y~C~A~N~~G~~~~s~~l~V~~~  842 (1075)
                      |+|.|+|+|+|..|..++++.|.|+.|
T Consensus        91 D~G~Y~Cevsn~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A           91 DRGYYRLEVKAKDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             TCSCEEEEEECSSCEEEEEECCEEECC
T ss_pred             hCEEEEEEEEEcCCcEEEEEEEEEEcC
Confidence            999999999999999999999999875

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.46  E-value=1.1e-12  Score=136.05  Aligned_cols=189  Identities=11%  Similarity=0.107  Sum_probs=115.2

Q ss_pred             ccceeeccceeEEEEEecCC----Cce--EEEEe-cCCCeeeE-Ee-cCCC--c----cccCCCeEEEee--CCeEEEEE
Q psy16863        250 HDIAVKVGTRARLLVEIRSP----TEI--KCQFD-LNNTIPFS-FR-AQGD--H----PIFGNRFRAINR--DGRTELNI  312 (1075)
Q Consensus       250 ~~~~v~~g~~~~l~c~~~~~----~~~--~c~~~-~~~~~~~~-w~-~~~~--~----~~~~~~~~~~~~--~~~~~L~I  312 (1075)
                      ..+.+.+|+.++|.|.+.+.    ..+  .|... .+....+. .+ ..+.  .    .....|+.+..+  .+..+|+|
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (232)
T 3qhz_H            8 GPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTM   87 (232)
T ss_dssp             CCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEE
T ss_pred             CCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEE
Confidence            44568899999999998642    223  22211 11111111 11 1221  0    111357777654  36678999


Q ss_pred             cccCCCCCEEEEEEEEeCC--------eeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEec-CC-CcEEE
Q psy16863        313 RRVRRDDGGRYSVTASNES--------GYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS-PT-EIKIH  382 (1075)
Q Consensus       313 ~~~~~~d~G~Y~C~a~n~~--------g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g-~p-~~~v~  382 (1075)
                      .+++.+|+|.|.|.+.+..        ........|.|......+|.+........+..|+.++|.|.+.+ .| ...+.
T Consensus        88 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~  167 (232)
T 3qhz_H           88 TNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVS  167 (232)
T ss_dssp             CSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSCCEEE
T ss_pred             CcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeEEE
Confidence            9999999999999999752        22334456777644455777764445556778999999999977 34 45788


Q ss_pred             EEECCEecCCCCc-EEEEEcCCE---EEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863        383 WYRNDRKLEENKI-YRTQHDGNF---YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV  439 (1075)
Q Consensus       383 W~k~g~~l~~~~~-~~~~~~g~~---~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V  439 (1075)
                      |+++|..+..... .....++..   ..|.|......| |.|+|.|.|..+.......+.+
T Consensus       168 W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~  227 (232)
T 3qhz_H          168 WNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  227 (232)
T ss_dssp             EGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCC
Confidence            9999975421110 011122322   368888888888 9999999999877765555544

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.46  E-value=9.3e-14  Score=166.40  Aligned_cols=156  Identities=20%  Similarity=0.320  Sum_probs=116.2

Q ss_pred             CceeeccCCeEEEEEEE-ecCCCcEEEEEECCEecCC------------CCcEEEEEcCCEEEEEEcccCCCCceeEEEE
Q psy16863        357 HDIAVKVGTRARLLVEI-RSPTEIKIHWYRNDRKLEE------------NKIYRTQHDGNFYFIDLSSVSLFDSGRWTCL  423 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~-~g~p~~~v~W~k~g~~l~~------------~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~  423 (1075)
                      ....+.+|++++|.|.+ .+.|.+.|+|+|++..+..            ..+..+..++   .|.|.+++.+|+|.|+|.
T Consensus       374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~L~i~~v~~~D~G~Y~C~  450 (581)
T 3o3u_N          374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNG---SLFLPAVGIQDEGIFRCQ  450 (581)
T ss_dssp             EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTS---CEEESSCCGGGCEEEEEE
T ss_pred             cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCc---eEEEeccccccCeEEEEE
Confidence            34678899999999998 7888899999998763311            1233333333   489999999999999999


Q ss_pred             EEeCCCce-eeEEEEEeecCCCCCCCeeeeecceEEecCCe-EEEEEEEEC-CCCCeEEEEeCCEeccCCC---------
Q psy16863        424 AENAVGRS-HCSCELSVLVPKAYKAPFFTKELEAILTEQGT-VSLECKVMG-IPTPQLIWYKDNKKIKAGD---------  491 (1075)
Q Consensus       424 a~n~~g~~-~~s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~-v~l~C~~~g-~p~~~v~W~~~g~~l~~~~---------  491 (1075)
                      +.|..|.. ...+.|.|..++.  .|.+...... +.+++. +.|.|.+.+ +|.+.|+|++||+++....         
T Consensus       451 ~~n~~~~~~~~~~~l~V~~~~~--~p~i~~~~~~-~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~  527 (581)
T 3o3u_N          451 AMNRNGKETKSNYRVRVYQIPG--KPEIVDSASE-LTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQT  527 (581)
T ss_dssp             EECTTSCEEEEEEEEEEEBCCC--CCEEESCCSE-ECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEE
T ss_pred             EEcCCCceeEEEEEEEEEcCCC--CCEEEcCCcc-cccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeee
Confidence            99999887 6778888877653  3454443333 445554 577999998 6999999999999885321         


Q ss_pred             -----------EEEEEeCCCC-CCCcEEEEEEEEeccee
Q psy16863        492 -----------IFALTANPKD-PSSLGTYTCEAVNCMGA  518 (1075)
Q Consensus       492 -----------~~~l~i~~~~-~~d~G~Y~C~a~n~~g~  518 (1075)
                                 ...|.+..+. ..+.|.|+|.|.|..+.
T Consensus       528 ~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~  566 (581)
T 3o3u_N          528 RRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR  566 (581)
T ss_dssp             EECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred             EEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence                       1247788777 55588999999998643

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=1e-13  Score=121.96  Aligned_cols=93  Identities=20%  Similarity=0.405  Sum_probs=80.1

Q ss_pred             CCCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeec-CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEE
Q psy16863        746 NKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVE-SDNVKILKETLGVCHLKIHALEVADQAEWKCIA  824 (1075)
Q Consensus       746 ~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A  824 (1075)
                      ..+|.|...+....+..|+.+.|.|.+.|.|.|.+.|+|+|..+.. ..++.+.  ..+  .|.|.+++.+|+|.|+|.|
T Consensus         6 ~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~--~~~--~L~i~~v~~~d~G~Y~C~a   81 (100)
T 2edj_A            6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ--EQG--TLQIKNLRISDTGTYTCVA   81 (100)
T ss_dssp             CSSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEEC--TTC--CEEEESCCTTTCCEEEEEE
T ss_pred             CCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEc--CCC--EEEEccCCcccCEEEEEEE
Confidence            3689999889999999999999999999999999999999998873 3444432  222  6999999999999999999


Q ss_pred             EeCCceEEEEEEEEEEec
Q psy16863        825 TNDFGQSITSCFLKLNVP  842 (1075)
Q Consensus       825 ~N~~G~~~~s~~l~V~~~  842 (1075)
                      .|..|....++.|.|..+
T Consensus        82 ~n~~g~~~~~~~l~V~~~   99 (100)
T 2edj_A           82 TSSSGETSWSAVLDVTES   99 (100)
T ss_dssp             ECSSCCCBCCEEEEEESC
T ss_pred             EcCCCCEEEEEEEEEecC
Confidence            999999988888888754

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.46  E-value=3.7e-13  Score=121.75  Aligned_cols=99  Identities=23%  Similarity=0.315  Sum_probs=87.0

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCC-CCcEEEEEcC-CEEEEEEcccCCCCceeEEEEEE
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEE-NKIYRTQHDG-NFYFIDLSSVSLFDSGRWTCLAE  425 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~-~~~~~~~~~g-~~~~L~I~~v~~~d~G~Y~C~a~  425 (1075)
                      .+|.|+..+.+..+.+|++++|.|.+.|.|.+.|.|+|+|..+.. ..++.+..++ ....|.|.+++.+|+|.|+|.|.
T Consensus        14 ~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   93 (116)
T 2kkq_A           14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAV   93 (116)
T ss_dssp             BCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEE
T ss_pred             CCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEE
Confidence            588999999999999999999999999999999999999999875 4677776654 45579999999999999999999


Q ss_pred             eCCCceeeEEEEEeecCCCCC
Q psy16863        426 NAVGRSHCSCELSVLVPKAYK  446 (1075)
Q Consensus       426 n~~g~~~~s~~l~V~~~~~~~  446 (1075)
                      |..|....++.|.|..+|...
T Consensus        94 N~~G~~~~~~~l~V~~~p~~~  114 (116)
T 2kkq_A           94 NEAGVTTCNTRLDVTARPNQT  114 (116)
T ss_dssp             ETTEEEEEEEEEEEECCSCCC
T ss_pred             cCCCeEEEEEEEEEeCCCCCC
Confidence            999999999999998876543

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.46  E-value=6.7e-13  Score=138.19  Aligned_cols=170  Identities=18%  Similarity=0.229  Sum_probs=113.5

Q ss_pred             ecCceeeccCCeEEEEEEEecCC----CcEEEEEECC--E---ec---C----------------CCCcEEEEEc--CCE
Q psy16863        355 RLHDIAVKVGTRARLLVEIRSPT----EIKIHWYRND--R---KL---E----------------ENKIYRTQHD--GNF  404 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~~g~p----~~~v~W~k~g--~---~l---~----------------~~~~~~~~~~--g~~  404 (1075)
                      .+..+.+.+|++++|.|.+.+.+    ...+.|||..  .   .+   .                ...|+.+..+  ...
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   85 (239)
T 3tv3_H            6 ESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNL   85 (239)
T ss_dssp             EESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTE
T ss_pred             cCCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCE
Confidence            34567899999999999998765    4599999842  1   11   1                1245555543  456


Q ss_pred             EEEEEcccCCCCceeEEEEEEeCCC-------------ceeeEEEEEeecCCCCCCCeee-eecceEEecCCeEEEEEEE
Q psy16863        405 YFIDLSSVSLFDSGRWTCLAENAVG-------------RSHCSCELSVLVPKAYKAPFFT-KELEAILTEQGTVSLECKV  470 (1075)
Q Consensus       405 ~~L~I~~v~~~d~G~Y~C~a~n~~g-------------~~~~s~~l~V~~~~~~~~p~~~-~~~~~~~~~g~~v~l~C~~  470 (1075)
                      ..|.|.+++.+|+|.|.|.+.+..+             .......|.|...+ ..+|.+. ..+...+..|+.+.|.|.+
T Consensus        86 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~-~~~P~v~~~~~~~~~~~g~~v~l~C~~  164 (239)
T 3tv3_H           86 VFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSAS-TKGPSVFPLAPSSKSTSGGTAALGCLV  164 (239)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCC-CBCCEEEEECCCCCC--TTEEEEEEEE
T ss_pred             EEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCC-CcCCEEEEECCChhhccCCcEEEEEEE
Confidence            7899999999999999999987532             11123456665322 2334444 3333335579999999999


Q ss_pred             EC-CCCC-eEEEEeCCEecc---------CCCEE----EEEeCCCCCCCcEEEEEEEEecceeeEEEEEEE
Q psy16863        471 MG-IPTP-QLIWYKDNKKIK---------AGDIF----ALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI  526 (1075)
Q Consensus       471 ~g-~p~~-~v~W~~~g~~l~---------~~~~~----~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~  526 (1075)
                      .+ .|.+ .+.|+++|..+.         .+..+    .|.+......| |.|+|.|.|..+.......|.
T Consensus       165 ~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~  234 (239)
T 3tv3_H          165 KDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVE  234 (239)
T ss_dssp             EEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECC
T ss_pred             eeEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEec
Confidence            98 4544 689999987431         12222    46777777788 999999999987665555443

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.45  E-value=6.7e-13  Score=138.23  Aligned_cols=190  Identities=11%  Similarity=0.077  Sum_probs=117.7

Q ss_pred             cccceeeccceeEEEEEecCCC------ceEEEEe-cCCCeeeE-Eec------CCCcc----ccCCCeEEEee--CCeE
Q psy16863        249 LHDIAVKVGTRARLLVEIRSPT------EIKCQFD-LNNTIPFS-FRA------QGDHP----IFGNRFRAINR--DGRT  308 (1075)
Q Consensus       249 ~~~~~v~~g~~~~l~c~~~~~~------~~~c~~~-~~~~~~~~-w~~------~~~~~----~~~~~~~~~~~--~~~~  308 (1075)
                      +..+.+.+|+.++|.|.+.+..      .+.|.-. .+....+. ...      .+...    ....|+.+..+  .+..
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   86 (239)
T 3tv3_H            7 SGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLV   86 (239)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEE
T ss_pred             CCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEE
Confidence            4456789999999999987532      2222211 11111111 111      11110    01356666543  4567


Q ss_pred             EEEEcccCCCCCEEEEEEEEeCCe-------------eEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEec
Q psy16863        309 ELNIRRVRRDDGGRYSVTASNESG-------------YSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS  375 (1075)
Q Consensus       309 ~L~I~~~~~~d~G~Y~C~a~n~~g-------------~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g  375 (1075)
                      .|+|.+++.+|+|.|.|.+.+..+             .......|.|....+.+|.+........+..|+.++|.|.+.+
T Consensus        87 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~~  166 (239)
T 3tv3_H           87 FLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKD  166 (239)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEEEE
T ss_pred             EEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEEee
Confidence            899999999999999999987521             1223346777644456777765555556678999999999977


Q ss_pred             -CC-CcEEEEEECCEecCCCCc-EEEEEcCCE---EEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863        376 -PT-EIKIHWYRNDRKLEENKI-YRTQHDGNF---YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV  439 (1075)
Q Consensus       376 -~p-~~~v~W~k~g~~l~~~~~-~~~~~~g~~---~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V  439 (1075)
                       .| +..+.|+++|..+..... .....++..   ..|.|.....+| |.|+|.|.|..+.......|.+
T Consensus       167 ~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~  235 (239)
T 3tv3_H          167 YFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  235 (239)
T ss_dssp             EBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             EeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEecc
Confidence             44 457999999975421111 111123322   358888888888 9999999999877665555443

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.45  E-value=8.6e-13  Score=136.88  Aligned_cols=170  Identities=15%  Similarity=0.207  Sum_probs=110.2

Q ss_pred             cCceeeccCCeEEEEEEEecC----CCcEEEEEECC--E---ec-----CC-----------CCcEEEEEc--CCEEEEE
Q psy16863        356 LHDIAVKVGTRARLLVEIRSP----TEIKIHWYRND--R---KL-----EE-----------NKIYRTQHD--GNFYFID  408 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~----p~~~v~W~k~g--~---~l-----~~-----------~~~~~~~~~--g~~~~L~  408 (1075)
                      +..+.+.+|++++|.|.+.+.    +...|.|||..  .   .+     ..           ..|+.+..+  .....|.
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   86 (232)
T 3qhz_H            7 SGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLT   86 (232)
T ss_dssp             ECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEE
T ss_pred             CCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEE
Confidence            345678999999999999763    23455999842  1   11     01           146666543  3567899


Q ss_pred             EcccCCCCceeEEEEEEeCC--------CceeeEEEEEeecCCCCCCCeee-eecceEEecCCeEEEEEEEECCCCC--e
Q psy16863        409 LSSVSLFDSGRWTCLAENAV--------GRSHCSCELSVLVPKAYKAPFFT-KELEAILTEQGTVSLECKVMGIPTP--Q  477 (1075)
Q Consensus       409 I~~v~~~d~G~Y~C~a~n~~--------g~~~~s~~l~V~~~~~~~~p~~~-~~~~~~~~~g~~v~l~C~~~g~p~~--~  477 (1075)
                      |.+++.+|+|.|.|.+.+..        ........|.|...+ ..+|.+. ..+...+..|+.++|.|.+.+.+++  .
T Consensus        87 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~-~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~  165 (232)
T 3qhz_H           87 MTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSAS-TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT  165 (232)
T ss_dssp             ECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSC-CBCCEEEEECC-------CEEEEEEEEEEEBSSCCE
T ss_pred             ECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCC-CCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeE
Confidence            99999999999999999763        112233456666422 2344444 3333345679999999999975443  6


Q ss_pred             EEEEeCCEecc---------CCCEE----EEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEE
Q psy16863        478 LIWYKDNKKIK---------AGDIF----ALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIA  527 (1075)
Q Consensus       478 v~W~~~g~~l~---------~~~~~----~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v  527 (1075)
                      +.|+++|..+.         .+..+    .|.+......| |.|+|.|.|..+.......+.+
T Consensus       166 v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~  227 (232)
T 3qhz_H          166 VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  227 (232)
T ss_dssp             EEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCC
Confidence            88999987431         12222    46677777778 9999999999877666555443

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=1.4e-13  Score=120.86  Aligned_cols=89  Identities=26%  Similarity=0.520  Sum_probs=77.9

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .||.|...+.+..+.+|+++.|.|.+.|.|.|.+.|+|+|..+......    ...+...|.|.+++.+|+|.|+|.|.|
T Consensus        10 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~----~~~~~~~L~i~~v~~~D~G~Y~C~a~N   85 (99)
T 2yr3_A           10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARST----CEAGVAELHIQDALPEDHGTYTCLAEN   85 (99)
T ss_dssp             EEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCE----EETTEEEEEECSCCTTCCBCEEEEEEC
T ss_pred             cCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceE----eeCCeEEEEECCCChhhCEEEEEEEEE
Confidence            5888988888899999999999999999999999999999988765432    123467899999999999999999999


Q ss_pred             CCceEEEEEEEEE
Q psy16863        827 DFGQSITSCFLKL  839 (1075)
Q Consensus       827 ~~G~~~~s~~l~V  839 (1075)
                      ..|....++.|.|
T Consensus        86 ~~g~~~~~~~l~V   98 (99)
T 2yr3_A           86 ALGQVSCSAWVTV   98 (99)
T ss_dssp             SSCEEEEECCEEE
T ss_pred             CCCeEEEEEEEEE
Confidence            9999888877776

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.44  E-value=8e-13  Score=117.96  Aligned_cols=94  Identities=15%  Similarity=0.253  Sum_probs=75.8

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCC---CeEEEEECCEEeec---CCcEEEEEee-----CcEEEEEEccccCC
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPE---PKVSWFRDDQQVVE---SDNVKILKET-----LGVCHLKIHALEVA  815 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~---p~v~W~k~g~~i~~---~~~~~~~~~~-----~~~~~L~I~~~~~~  815 (1075)
                      ..|.|+..+.++.+..|++++|.|.+.|.|.   |.|+|||++.....   ..++.+....     .+...|.|.+++.+
T Consensus         3 p~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   82 (108)
T 3cx2_A            3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA   82 (108)
T ss_dssp             CCCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGG
T ss_pred             CccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCc
Confidence            3678888888999999999999999999998   99999998733221   2355543211     12568999999999


Q ss_pred             CCeEEEEEEEeCCceEEEEEEEEEE
Q psy16863        816 DQAEWKCIATNDFGQSITSCFLKLN  840 (1075)
Q Consensus       816 D~G~Y~C~A~N~~G~~~~s~~l~V~  840 (1075)
                      |+|.|+|.|.|..|.+.+++.|.|.
T Consensus        83 D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           83 FTGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             cCEEEEEEEecCCCceEEEEEEEEe
Confidence            9999999999999999999988885

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.44  E-value=3.5e-13  Score=116.64  Aligned_cols=89  Identities=20%  Similarity=0.289  Sum_probs=77.3

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECC--EecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEe
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRND--RKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g--~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      +|.|...+....+.+|+.+.|.|.+.|.|.|.|+|+|+|  ..+.....  +........|.|.++..+|+|.|+|.|.|
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   79 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELL--VDAKSSTTSIFFPSAKRADSGNYKLKVKN   79 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSE--EEEETTEEEEECTTBCGGGCEEEEEEEEE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEE--EEecCCEEEEEECCCChhcCEEEEEEEEc
Confidence            688877788899999999999999999999999999999  88876543  33445567899999999999999999999


Q ss_pred             CCCceeeEEEEEe
Q psy16863        427 AVGRSHCSCELSV  439 (1075)
Q Consensus       427 ~~g~~~~s~~l~V  439 (1075)
                      ..|....++.|.|
T Consensus        80 ~~G~~~~~~~l~V   92 (93)
T 1wit_A           80 ELGEDEAIFEVIV   92 (93)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCeEEEEEEEEE
Confidence            9998888877776

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.44  E-value=3.2e-13  Score=139.74  Aligned_cols=164  Identities=16%  Similarity=0.179  Sum_probs=109.5

Q ss_pred             eeecCceeeccCCeEEEEEEEecC--CCcEEEEEECC--Ee---cC-------------CCCcEEEEEcC--CEEEEEEc
Q psy16863        353 IRRLHDIAVKVGTRARLLVEIRSP--TEIKIHWYRND--RK---LE-------------ENKIYRTQHDG--NFYFIDLS  410 (1075)
Q Consensus       353 ~~~~~~~~v~~G~~v~l~C~~~g~--p~~~v~W~k~g--~~---l~-------------~~~~~~~~~~g--~~~~L~I~  410 (1075)
                      ...+..+.+.+|++++|.|.+.+.  +.+.+.|||..  ..   +.             ...|+.+..+.  ....|.|.
T Consensus         5 ~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (230)
T 1ypz_F            5 EQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIY   84 (230)
T ss_dssp             ECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEEC
T ss_pred             cccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEEC
Confidence            344567789999999999999764  56789999853  11   10             23556655432  56789999


Q ss_pred             ccCCCCceeEEEEEEeC--CC--ceeeEEEEEeecCC------CCCCCeeeeecceEEecCCeEEEEEEEECC-CC-CeE
Q psy16863        411 SVSLFDSGRWTCLAENA--VG--RSHCSCELSVLVPK------AYKAPFFTKELEAILTEQGTVSLECKVMGI-PT-PQL  478 (1075)
Q Consensus       411 ~v~~~d~G~Y~C~a~n~--~g--~~~~s~~l~V~~~~------~~~~p~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~v  478 (1075)
                      +++.+|+|.|.|.+.+.  ..  .......|.|....      ....|.+..+....+.+|+.++|.|.+.|. |. +.|
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~v  164 (230)
T 1ypz_F           85 SLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIRV  164 (230)
T ss_dssp             SCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCEE
T ss_pred             cCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeEE
Confidence            99999999999999885  11  11123467776211      011122222212224568899999999986 75 599


Q ss_pred             EEEe-CCEeccCC---------CEE----EEEeCCCCCCCcEEEEEEEEeccee
Q psy16863        479 IWYK-DNKKIKAG---------DIF----ALTANPKDPSSLGTYTCEAVNCMGA  518 (1075)
Q Consensus       479 ~W~~-~g~~l~~~---------~~~----~l~i~~~~~~d~G~Y~C~a~n~~g~  518 (1075)
                      +|++ ||+.+..+         ..+    .|.|..... + |.|+|.|.|..+.
T Consensus       165 ~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~  216 (230)
T 1ypz_F          165 YWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNK  216 (230)
T ss_dssp             EEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCT
T ss_pred             EEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCC
Confidence            9999 88776432         222    477776654 4 9999999998764

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.44  E-value=1.5e-13  Score=119.37  Aligned_cols=87  Identities=16%  Similarity=0.261  Sum_probs=77.2

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .||.|...+....+.+|+.+.|.|.+.|.| |.+.|+|+|..+..+.++.+.   .  ..|.|.+++.+|+|.|+|.|.|
T Consensus         8 ~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~---~--~~L~i~~~~~~D~G~Y~C~a~n   81 (95)
T 2ckn_A            8 QPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT---G--EEVEVRDSIPADSGLYACVTSS   81 (95)
T ss_dssp             CSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC---S--SEEEESSCCGGGSEEEEEEEEE
T ss_pred             CCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe---C--CEEEECCCChHHCEEEEEEecc
Confidence            688888888889999999999999999998 899999999999887776653   2  2799999999999999999999


Q ss_pred             CCceEEEEEEEEE
Q psy16863        827 DFGQSITSCFLKL  839 (1075)
Q Consensus       827 ~~G~~~~s~~l~V  839 (1075)
                      ..|....++.|.|
T Consensus        82 ~~g~~~~~~~l~V   94 (95)
T 2ckn_A           82 PSGSDTTYFSVNV   94 (95)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEE
Confidence            9999888877766

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.44  E-value=1.1e-12  Score=136.63  Aligned_cols=173  Identities=10%  Similarity=0.152  Sum_probs=111.8

Q ss_pred             cccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCC--------------Ccc---ccCCCeEEEee-CCeE
Q psy16863        247 RRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG--------------DHP---IFGNRFRAINR-DGRT  308 (1075)
Q Consensus       247 ~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~--------------~~~---~~~~~~~~~~~-~~~~  308 (1075)
                      ..+..+.+.+|+.++|.|.+..+           ...+.|++.+              ...   ....++.+... .+..
T Consensus         4 q~p~~v~v~~G~~v~L~C~~~~~-----------~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~   72 (238)
T 1bec_A            4 QSPRNKVAVTGGKVTLSCQQTNN-----------HNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQF   72 (238)
T ss_dssp             EECSEEEEETTCCEEEEEEESSC-----------CSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEE
T ss_pred             cCCCeeEEeCCCcEEEEEEeCCC-----------CceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEE
Confidence            34566788999999999998532           2233343321              000   01356666542 4567


Q ss_pred             EEEEcccCCCCCEEEEEEEEeCCe-----eEEEEEEEEEecC--CCCCCeeee-ecCceeeccCCeEEEEEEEecC-CC-
Q psy16863        309 ELNIRRVRRDDGGRYSVTASNESG-----YSTAKFELSVESQ--VPDAPAFIR-RLHDIAVKVGTRARLLVEIRSP-TE-  378 (1075)
Q Consensus       309 ~L~I~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~V~~~--~~~~p~~~~-~~~~~~v~~G~~v~l~C~~~g~-p~-  378 (1075)
                      +|+|.+++.+|+|.|.|.+.|..+     .......|.|...  ...+|.+.. .+....+.+|+.++|.|.+.|. |. 
T Consensus        73 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~  152 (238)
T 1bec_A           73 SLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDH  152 (238)
T ss_dssp             EEEESSCCGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCC
T ss_pred             EEEEecCCcccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCC
Confidence            999999999999999999998631     1122345777642  123566543 3445567789999999999884 64 


Q ss_pred             cEEEEEECCEecCCCCcE----EEEEcCCEE---EEEEcccCCCC-ceeEEEEEEeCCCc
Q psy16863        379 IKIHWYRNDRKLEENKIY----RTQHDGNFY---FIDLSSVSLFD-SGRWTCLAENAVGR  430 (1075)
Q Consensus       379 ~~v~W~k~g~~l~~~~~~----~~~~~g~~~---~L~I~~v~~~d-~G~Y~C~a~n~~g~  430 (1075)
                      +.|.|+|||..+..+...    ....++...   .|.|......| .|.|+|.|.|....
T Consensus       153 ~~v~W~~~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~  212 (238)
T 1bec_A          153 VELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLS  212 (238)
T ss_dssp             EEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCCC
T ss_pred             cEEEEEECCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCCC
Confidence            499999999998765322    112344322   34555444444 57899999998543

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.44  E-value=1e-13  Score=124.10  Aligned_cols=94  Identities=21%  Similarity=0.469  Sum_probs=73.0

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .+|.|...+.+..+..|+.+.|.|.+.|.|.|.+.|+|+|..+....++.+..   +...|.|.+++.+|+|.|+|.|.|
T Consensus         9 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~a~n   85 (108)
T 3kvq_A            9 VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD---GNRNLTIRRVRKEDEGLYTCQACS   85 (108)
T ss_dssp             --CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEET---TTTEEEECSCCGGGCEEEEEEEC-
T ss_pred             CCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeC---CCcEEEEeecCcccCEEEEEEEEe
Confidence            58888888888999999999999999999999999999999998777765532   224799999999999999999999


Q ss_pred             CCceEEEEEEEEEEecC
Q psy16863        827 DFGQSITSCFLKLNVPK  843 (1075)
Q Consensus       827 ~~G~~~~s~~l~V~~~~  843 (1075)
                      ..|....++.|.|..++
T Consensus        86 ~~g~~~~~~~l~V~~~~  102 (108)
T 3kvq_A           86 VLGCAKVEAFFIIEGAQ  102 (108)
T ss_dssp             ---CEEEEEEEEEEC--
T ss_pred             CCCceEEEEEEEEeCCC
Confidence            99999999999998754

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.44  E-value=6.9e-13  Score=138.58  Aligned_cols=191  Identities=13%  Similarity=0.134  Sum_probs=116.3

Q ss_pred             ccccceeeccceeEEEEEecCC----CceEEEEe-cCCCeeeE-Eec-CCCcc----ccCCCeEEEee--CCeEEEEEcc
Q psy16863        248 RLHDIAVKVGTRARLLVEIRSP----TEIKCQFD-LNNTIPFS-FRA-QGDHP----IFGNRFRAINR--DGRTELNIRR  314 (1075)
Q Consensus       248 ~~~~~~v~~g~~~~l~c~~~~~----~~~~c~~~-~~~~~~~~-w~~-~~~~~----~~~~~~~~~~~--~~~~~L~I~~  314 (1075)
                      .+..+.+.+|+.++|.|.+.+.    ..+.|.-. .+....+. +.. .+...    ....|+.+..+  .+..+|+|.+
T Consensus         5 ~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   84 (248)
T 3u2s_H            5 ESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNS   84 (248)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             cCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECC
Confidence            3456778999999999998642    22333211 11122221 111 11110    11457776653  4567899999


Q ss_pred             cCCCCCEEEEEEEEeCC----------------------eeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEE
Q psy16863        315 VRRDDGGRYSVTASNES----------------------GYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVE  372 (1075)
Q Consensus       315 ~~~~d~G~Y~C~a~n~~----------------------g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~  372 (1075)
                      ++.+|+|.|.|.+.+..                      ........|.|....+.+|.+........+..|+.++|.|.
T Consensus        85 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~  164 (248)
T 3u2s_H           85 LRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCL  164 (248)
T ss_dssp             CCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEEEEE
T ss_pred             CCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEEEE
Confidence            99999999999998742                      12223457777654556677665555556678999999999


Q ss_pred             Eec-CC-CcEEEEEECCEecCCCC-cEEEEEcCCE---EEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863        373 IRS-PT-EIKIHWYRNDRKLEENK-IYRTQHDGNF---YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV  439 (1075)
Q Consensus       373 ~~g-~p-~~~v~W~k~g~~l~~~~-~~~~~~~g~~---~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V  439 (1075)
                      +.+ .| .+.+.|+++|..+.... ......+|..   ..|.|......| |.|+|.|.|..+.......+.+
T Consensus       165 ~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~  236 (248)
T 3u2s_H          165 VKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP  236 (248)
T ss_dssp             EEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred             EeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEcc
Confidence            976 45 57899999997542111 0111123322   357888888888 9999999998877665544443

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.44  E-value=5.9e-13  Score=137.80  Aligned_cols=169  Identities=14%  Similarity=0.216  Sum_probs=111.7

Q ss_pred             eeeeecCCeEEEEEEEecC--CCCeEEEEECC--E---Ee-e-------------cCCcEEEEEee-CcEEEEEEccccC
Q psy16863        757 SCQATVNEEFKFTVQVSIS--PEPKVSWFRDD--Q---QV-V-------------ESDNVKILKET-LGVCHLKIHALEV  814 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~g~--p~p~v~W~k~g--~---~i-~-------------~~~~~~~~~~~-~~~~~L~I~~~~~  814 (1075)
                      ...+.+|++++|.|.+.+.  +...+.|||..  .   .+ .             ...|+.+..+. .+.+.|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (230)
T 3n9g_H            9 AEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLRS   88 (230)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCh
Confidence            3568899999999999863  35689999832  1   11 0             12466665543 3578899999999


Q ss_pred             CCCeEEEEEEEeCC-----ceEE---EEEEEEEEecCCCCCCeeee-ecceeecCCCeEEEEEEEEccCC--CeeEEEEC
Q psy16863        815 ADQAEWKCIATNDF-----GQSI---TSCFLKLNVPKHYKKPKFLE-ELKAVLSEGGAVNLECKVIGVPQ--PTLKWFKD  883 (1075)
Q Consensus       815 ~D~G~Y~C~A~N~~-----G~~~---~s~~l~V~~~~~~~~p~~~~-~~~~~~~~g~~~~L~C~v~g~p~--p~v~W~k~  883 (1075)
                      +|+|.|.|.+.|..     +...   ....|.|...+ ..+|.+.. .....+.+|+.++|.|.+.|.++  +.|+|  |
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~-~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W--~  165 (230)
T 3n9g_H           89 EDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSAS-TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--N  165 (230)
T ss_dssp             GGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSC-CBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE--G
T ss_pred             hhCEEEEEEEccCCCCcccccccccCCCEEEEEEecC-CCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE--C
Confidence            99999999999864     1111   23456665322 23444432 22223458999999999998543  46899  6


Q ss_pred             CEEcCC-----------CCee----EEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEec
Q psy16863        884 GRELKA-----------GDIH----KIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGFE  929 (1075)
Q Consensus       884 g~~l~~-----------~~~~----~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~  929 (1075)
                      |..+..           +..+    .|.+......| |.|+|.|.|..+.....+.|.+.+
T Consensus       166 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~~  225 (230)
T 3n9g_H          166 SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPKS  225 (230)
T ss_dssp             GGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCCT
T ss_pred             CcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCCC
Confidence            655532           1111    34444444567 999999999998887777766643

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.43  E-value=1.2e-12  Score=132.67  Aligned_cols=159  Identities=13%  Similarity=0.167  Sum_probs=104.4

Q ss_pred             EeccceeeeecCCeEEEEEEEecCCCCeEEEEECC--E---Ee-------ecCCcEEEEEe--eCcEEEEEEccccCCCC
Q psy16863        752 IEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDD--Q---QV-------VESDNVKILKE--TLGVCHLKIHALEVADQ  817 (1075)
Q Consensus       752 ~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g--~---~i-------~~~~~~~~~~~--~~~~~~L~I~~~~~~D~  817 (1075)
                      ...+..+.+.+|++++|.|.+.+.+ +.+.|||.+  .   .+       ....|+.+..+  ..+...|.|.+++.+|+
T Consensus         5 ~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~   83 (207)
T 1ypz_E            5 EQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDS   83 (207)
T ss_dssp             EESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGC
T ss_pred             EECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHC
Confidence            3345567799999999999998754 589999853  2   22       13456776543  14567999999999999


Q ss_pred             eEEEEEEEeCCc---------eE--EEEEEEEEEecC-CCCCCeeeeecceeecCCCeEEEEEEEEcc-CC-CeeEEEEC
Q psy16863        818 AEWKCIATNDFG---------QS--ITSCFLKLNVPK-HYKKPKFLEELKAVLSEGGAVNLECKVIGV-PQ-PTLKWFKD  883 (1075)
Q Consensus       818 G~Y~C~A~N~~G---------~~--~~s~~l~V~~~~-~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~-p~-p~v~W~k~  883 (1075)
                      |.|.|.+.|..|         ..  .....|.|.... ...+|....     . .+ .++|.|.+.|. |. |.|+|+||
T Consensus        84 G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P~v~~-----~-~~-~~~l~C~~~g~~P~~~~v~W~~~  156 (207)
T 1ypz_E           84 GTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFI-----M-KN-GTNVACLVKDFYPKEVTISLRSS  156 (207)
T ss_dssp             EEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCCEEEE-----E-EE-TTEEEEEEEEESSSCCEEEEECS
T ss_pred             EEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCCCCeEEE-----e-CC-CCeEEEEEeeEeCCCeEEEEecC
Confidence            999999998742         11  123567776421 112333211     1 11 27999999986 44 79999999


Q ss_pred             CEEcCCC---------CeeEEEECCCCceeeEEEEEEEEeCCeeEE
Q psy16863        884 GRELKAG---------DIHKIISGEDGTCCLGIYTCEAHNCMGTTS  920 (1075)
Q Consensus       884 g~~l~~~---------~~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~  920 (1075)
                       .++..+         ..+.+.. .....|.|.|+|.|.|..+.+.
T Consensus       157 -~~l~~~~~~~~~~~~g~y~~~~-~~~~~~~~~ytC~v~~~~~~~~  200 (207)
T 1ypz_E          157 -KKIVEFDPAIVISPSGKYSAVK-LGQYGDSNSVTCSVQHNSETVH  200 (207)
T ss_dssp             -SEEEECCCEEEECTTSSEEEEE-CEEESSTTTCEEEEEETTEEEE
T ss_pred             -CcccCCccceEEcCCCcEEEEE-eecccCCCcEEEEEEECCccEe
Confidence             666432         2233321 1111346999999999988654

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.43  E-value=6.4e-13  Score=116.68  Aligned_cols=93  Identities=22%  Similarity=0.452  Sum_probs=81.6

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCC-CcEEEEEcCCEEEEEEcccCCCCceeEEEEEEe
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN-KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      .+|.|...+....+.+|+++.|.|.+.|.|.+.|.|+|+|..+..+ .++....++..+.|.|.+++.+|+|.|+|.|.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   83 (99)
T 1u2h_A            4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVN   83 (99)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEE
Confidence            3678888888889999999999999999999999999999998765 445566677777899999999999999999999


Q ss_pred             CCCceeeEEEEEee
Q psy16863        427 AVGRSHCSCELSVL  440 (1075)
Q Consensus       427 ~~g~~~~s~~l~V~  440 (1075)
                      ..|....++.|.|.
T Consensus        84 ~~g~~~~~~~l~V~   97 (99)
T 1u2h_A           84 EYGARQCEARLEVR   97 (99)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCceeEEEEEEEE
Confidence            99998888888775

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=3e-13  Score=123.19  Aligned_cols=94  Identities=22%  Similarity=0.392  Sum_probs=82.5

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeec-CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVE-SDNVKILKETLGVCHLKIHALEVADQAEWKCIAT  825 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~  825 (1075)
                      .||.|...+.+..+..|+.+.|.|.+.|.|.|.++|+|+|..+.. ..++.+..  .+  .|.|.+++.+|+|.|+|.|.
T Consensus         7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~--~~--~L~i~~v~~~D~G~Y~C~a~   82 (118)
T 2eo9_A            7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLE--NG--VLQIRYAKLGDTGRYTCIAS   82 (118)
T ss_dssp             CSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEE--TT--EEEEESCCGGGCCCEEEEEE
T ss_pred             CCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEcc--CC--EEEEccCCcCCCEEEEEEEE
Confidence            688998888899999999999999999999999999999998864 45565543  33  79999999999999999999


Q ss_pred             eCCceEEEEEEEEEEecCC
Q psy16863        826 NDFGQSITSCFLKLNVPKH  844 (1075)
Q Consensus       826 N~~G~~~~s~~l~V~~~~~  844 (1075)
                      |..|....++.|.|..++.
T Consensus        83 n~~g~~~~~~~l~V~~~~~  101 (118)
T 2eo9_A           83 TPSGEATWSAYIEVQEFGV  101 (118)
T ss_dssp             CSSCEEEEECCEEEECCSC
T ss_pred             cCCCcEEEEEEEEEEeCCC
Confidence            9999999999999987653

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=7.7e-13  Score=116.72  Aligned_cols=92  Identities=22%  Similarity=0.311  Sum_probs=80.6

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCC----------cEEEEEcCCEEEEEEcccCCCCc
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENK----------IYRTQHDGNFYFIDLSSVSLFDS  417 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~----------~~~~~~~g~~~~L~I~~v~~~d~  417 (1075)
                      .+|.|...+.+..+.+|+.+.|.|++++  .+.++|||||++|..+.          ++.+..+|..+.|.|.+++.+|+
T Consensus         7 p~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~   84 (112)
T 2e6q_A            7 GTARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDS   84 (112)
T ss_dssp             SCCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTC
T ss_pred             CCcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHC
Confidence            4688999999999999999999999987  67899999999999887          89998899999999999999999


Q ss_pred             eeEEEEEEeCCCceeeEEEEEeecCCC
Q psy16863        418 GRWTCLAENAVGRSHCSCELSVLVPKA  444 (1075)
Q Consensus       418 G~Y~C~a~n~~g~~~~s~~l~V~~~~~  444 (1075)
                      |.|+|..-   +....++.|.|..+|.
T Consensus        85 G~Y~~~~~---~~~~ssA~L~V~~~p~  108 (112)
T 2e6q_A           85 GALVGFSC---PGVQDSAALTIQESSG  108 (112)
T ss_dssp             SEEEEEEE---TTEEEEEEEEEECSSC
T ss_pred             ccEEEEEE---CCeeEEEEEEEeCCCc
Confidence            99977432   3456789999987753

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.43  E-value=1.6e-12  Score=113.42  Aligned_cols=90  Identities=18%  Similarity=0.348  Sum_probs=80.5

Q ss_pred             eeeecCceeeccCCeEEEEEEEecC-CCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIRSP-TEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGR  430 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~g~-p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~  430 (1075)
                      +...+.+..+.+|+++.|.|.+.|. |.+.+.|||++..+..+.++.+...+....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         4 v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   83 (97)
T 2bk8_A            4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGE   83 (97)
T ss_dssp             EECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             eeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCe
Confidence            4455678899999999999999996 899999999999999888888877777888999999999999999999999999


Q ss_pred             eeeEEEEEeec
Q psy16863        431 SHCSCELSVLV  441 (1075)
Q Consensus       431 ~~~s~~l~V~~  441 (1075)
                      ...++.|.|..
T Consensus        84 ~~~~~~l~V~~   94 (97)
T 2bk8_A           84 DSSYAELFVKG   94 (97)
T ss_dssp             EEEEEEEEETT
T ss_pred             EeEEEEEEEEe
Confidence            98888887753

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.43  E-value=4e-13  Score=141.34  Aligned_cols=167  Identities=14%  Similarity=0.232  Sum_probs=109.7

Q ss_pred             eeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECC--E--e-c------------CCCCcEEEEEc-CCEEEEEEccc
Q psy16863        351 AFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRND--R--K-L------------EENKIYRTQHD-GNFYFIDLSSV  412 (1075)
Q Consensus       351 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g--~--~-l------------~~~~~~~~~~~-g~~~~L~I~~v  412 (1075)
                      .+...+..+.+.+|++++|.|.+. .+.+.+.|||+.  .  . +            ....|+.+..+ +....|.|.++
T Consensus         5 ~v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v   83 (252)
T 1oga_E            5 GITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSA   83 (252)
T ss_dssp             CEECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSC
T ss_pred             cceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcC
Confidence            345556678899999999999994 457899999953  1  1 1            01245555432 33456999999


Q ss_pred             CCCCceeEEEEEEeCC---CceeeEEEEEeecCC-CCCCCeeeee-cce-EEecCCeEEEEEEEECC-CCC-eEEEEeCC
Q psy16863        413 SLFDSGRWTCLAENAV---GRSHCSCELSVLVPK-AYKAPFFTKE-LEA-ILTEQGTVSLECKVMGI-PTP-QLIWYKDN  484 (1075)
Q Consensus       413 ~~~d~G~Y~C~a~n~~---g~~~~s~~l~V~~~~-~~~~p~~~~~-~~~-~~~~g~~v~l~C~~~g~-p~~-~v~W~~~g  484 (1075)
                      +.+|+|.|.|.+.|..   ........|.|.... ...+|.+... +.. .+.+|+.++|.|.+.|. |.+ .|+|+|||
T Consensus        84 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g  163 (252)
T 1oga_E           84 QKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG  163 (252)
T ss_dssp             CSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred             ChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECC
Confidence            9999999999999862   111223456666421 1224444322 211 24478999999999985 654 99999999


Q ss_pred             EeccCCC----------------EE----EEEeCCCCC-CCcEEEEEEEEeccee
Q psy16863        485 KKIKAGD----------------IF----ALTANPKDP-SSLGTYTCEAVNCMGA  518 (1075)
Q Consensus       485 ~~l~~~~----------------~~----~l~i~~~~~-~d~G~Y~C~a~n~~g~  518 (1075)
                      +++..+.                .+    .|.+..... +|.|.|+|.|.|....
T Consensus       164 ~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~  218 (252)
T 1oga_E          164 KEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  218 (252)
T ss_dssp             EEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             EECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            9875421                12    245544333 3578999999997543

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.43  E-value=7e-13  Score=139.60  Aligned_cols=182  Identities=12%  Similarity=0.140  Sum_probs=112.2

Q ss_pred             ccccceeeccceeEEEEEecCCCc--eEEEE-ecCCCeeeEEecCCCcccc----CC-CeEEEeeCCeEEEEEcccCCCC
Q psy16863        248 RLHDIAVKVGTRARLLVEIRSPTE--IKCQF-DLNNTIPFSFRAQGDHPIF----GN-RFRAINRDGRTELNIRRVRRDD  319 (1075)
Q Consensus       248 ~~~~~~v~~g~~~~l~c~~~~~~~--~~c~~-~~~~~~~~~w~~~~~~~~~----~~-~~~~~~~~~~~~L~I~~~~~~d  319 (1075)
                      .+..+.+.+|+.++|.|.......  +.|.- ..+....+..+..++....    .+ ++.+...+... |+|.+++.+|
T Consensus         7 ~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~~~D   85 (253)
T 3to4_D            7 NPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVANMSQ   85 (253)
T ss_dssp             ECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEESCSS
T ss_pred             CCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCChhh
Confidence            355678899999999998654322  22211 1111222222222211111    12 66665544443 9999999999


Q ss_pred             CEEEEEEEEeCCe------eEEEEEEEEEecC--CCCCCeeee-ecCceeeccCCeEEEEEEEec-CCCc-EEEEEECCE
Q psy16863        320 GGRYSVTASNESG------YSTAKFELSVESQ--VPDAPAFIR-RLHDIAVKVGTRARLLVEIRS-PTEI-KIHWYRNDR  388 (1075)
Q Consensus       320 ~G~Y~C~a~n~~g------~~~~~~~l~V~~~--~~~~p~~~~-~~~~~~v~~G~~v~l~C~~~g-~p~~-~v~W~k~g~  388 (1075)
                      +|.|.|.+.+..+      .......|.|...  ...+|.+.. .+....+..|+.++|.|.+.| .|.+ .|+|+|||.
T Consensus        86 sG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~  165 (253)
T 3to4_D           86 GRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGK  165 (253)
T ss_dssp             CEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTE
T ss_pred             CeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECCE
Confidence            9999999987543      2223346666531  224565543 334445566899999999988 5655 999999999


Q ss_pred             ecCCCCcEEE---E-----EcCCE---EEEEEcccCCCC-ceeEEEEEEeCCCc
Q psy16863        389 KLEENKIYRT---Q-----HDGNF---YFIDLSSVSLFD-SGRWTCLAENAVGR  430 (1075)
Q Consensus       389 ~l~~~~~~~~---~-----~~g~~---~~L~I~~v~~~d-~G~Y~C~a~n~~g~  430 (1075)
                      .+........   .     .++..   ..|.|.....+| .|.|+|.|.|....
T Consensus       166 ~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l~  219 (253)
T 3to4_D          166 EVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  219 (253)
T ss_dssp             EECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             ECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCCC
Confidence            9865432111   0     23433   367888877777 67999999997543

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=6.7e-13  Score=117.11  Aligned_cols=91  Identities=16%  Similarity=0.263  Sum_probs=77.6

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCC----------cEEEEEeeCcEEEEEEccccCCC
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESD----------NVKILKETLGVCHLKIHALEVAD  816 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~----------~~~~~~~~~~~~~L~I~~~~~~D  816 (1075)
                      .+|.|+..+++..+.+|+.+.|+|.+++  .|.++|||||++|..+.          ++.+..+ ...++|+|.+++.+|
T Consensus         7 p~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~-g~~~~L~I~~v~~~D   83 (112)
T 2e6q_A            7 GTARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQK-GLQHRLILHAVKHQD   83 (112)
T ss_dssp             SCCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCB-TTEEEEEEESCCSTT
T ss_pred             CCcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeC-CcEEEEEECCCCHHH
Confidence            4688999999999999999999999997  77899999999999887          7777543 357899999999999


Q ss_pred             CeEEEEEEEeCCceEEEEEEEEEEecC
Q psy16863        817 QAEWKCIATNDFGQSITSCFLKLNVPK  843 (1075)
Q Consensus       817 ~G~Y~C~A~N~~G~~~~s~~l~V~~~~  843 (1075)
                      +|.|+|...+   ...+++.|.|+.+|
T Consensus        84 ~G~Y~~~~~~---~~~ssA~L~V~~~p  107 (112)
T 2e6q_A           84 SGALVGFSCP---GVQDSAALTIQESS  107 (112)
T ss_dssp             CSEEEEEEET---TEEEEEEEEEECSS
T ss_pred             CccEEEEEEC---CeeEEEEEEEeCCC
Confidence            9999774433   45678999999765

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=2.7e-13  Score=119.76  Aligned_cols=93  Identities=13%  Similarity=0.078  Sum_probs=80.8

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCC-CeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPE-PKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT  825 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~-p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~  825 (1075)
                      .||.|+..+++..+.+|++++|.|.+.+.|. +.+.|||||.+|..+.++.+..+ ...+.|.|.+++.+|+|.|+|.|.
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~   85 (104)
T 2eny_A            7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQ-GRKYILVVREAAPSDAGEVVFSVR   85 (104)
T ss_dssp             CCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEE-TTEEEEEECSCCTTTCSCEEEEET
T ss_pred             CCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEc-CCEEEEEECCCCHHHCEEEEEEEC
Confidence            5778888999999999999999999998875 48999999999998888887654 357799999999999999999994


Q ss_pred             eCCceEEEEEEEEEEecCC
Q psy16863        826 NDFGQSITSCFLKLNVPKH  844 (1075)
Q Consensus       826 N~~G~~~~s~~l~V~~~~~  844 (1075)
                          ....++.|.|..+|.
T Consensus        86 ----~~~~~a~L~V~~~p~  100 (104)
T 2eny_A           86 ----GLTSKASLIVRERSG  100 (104)
T ss_dssp             ----TEEEEECEEEECCCS
T ss_pred             ----CeeEEEEEEEeCCCc
Confidence                456789999987653

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.42  E-value=1.1e-13  Score=121.76  Aligned_cols=93  Identities=15%  Similarity=0.363  Sum_probs=73.6

Q ss_pred             CCCeEEecc----ceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEE
Q psy16863        747 KAPKFIEGL----KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKC  822 (1075)
Q Consensus       747 ~~p~~~~~~----~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C  822 (1075)
                      .||.|+..+    ....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.++.......+...|.|.+++.+|+|.|+|
T Consensus         3 ~~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C   82 (100)
T 3caf_A            3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC   82 (100)
T ss_dssp             EEEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred             CCCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEE
Confidence            366666543    3567889999999999999999999999999998765442211111223479999999999999999


Q ss_pred             EEEeCCceEEEEEEEEE
Q psy16863        823 IATNDFGQSITSCFLKL  839 (1075)
Q Consensus       823 ~A~N~~G~~~~s~~l~V  839 (1075)
                      .|.|..|....++.|.|
T Consensus        83 ~a~N~~g~~~~~~~l~V   99 (100)
T 3caf_A           83 VVENEYGSINHTYHLDV   99 (100)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEeCCCEEEEEEEEEE
Confidence            99999999888887776

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=3.8e-13  Score=118.79  Aligned_cols=93  Identities=12%  Similarity=0.183  Sum_probs=82.7

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCC-cEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEe
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTE-IKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~-~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      .+|.|...+.+..+.+|+.++|.|.+.+.|. +.+.|||||..|..+.++.+..++..+.|.|.++..+|+|.|+|.|  
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a--   84 (104)
T 2eny_A            7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSV--   84 (104)
T ss_dssp             CCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEE--
T ss_pred             CCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEE--
Confidence            4678888899999999999999999988764 4899999999999888999988999999999999999999999998  


Q ss_pred             CCCceeeEEEEEeecCCC
Q psy16863        427 AVGRSHCSCELSVLVPKA  444 (1075)
Q Consensus       427 ~~g~~~~s~~l~V~~~~~  444 (1075)
                        +....++.|.|..+|.
T Consensus        85 --~~~~~~a~L~V~~~p~  100 (104)
T 2eny_A           85 --RGLTSKASLIVRERSG  100 (104)
T ss_dssp             --TTEEEEECEEEECCCS
T ss_pred             --CCeeEEEEEEEeCCCc
Confidence              4566788899987764

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.41  E-value=8.8e-13  Score=116.01  Aligned_cols=95  Identities=20%  Similarity=0.430  Sum_probs=80.8

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcE-EEEEcCCEEEEEEcccCCCCceeEEEEEEe
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIY-RTQHDGNFYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~-~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      .+|.|...+....+.+|++++|.|.+.|.|.+.|.|+|+|..+....+. .....+..+.|.|.+++.+|+|.|+|.|.|
T Consensus         4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   83 (100)
T 2kdg_A            4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKN   83 (100)
T ss_dssp             EEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEc
Confidence            3677877788899999999999999999999999999999998776532 233455567899999999999999999999


Q ss_pred             CCCceeeEEEEEeecC
Q psy16863        427 AVGRSHCSCELSVLVP  442 (1075)
Q Consensus       427 ~~g~~~~s~~l~V~~~  442 (1075)
                      ..|....++.|.|...
T Consensus        84 ~~g~~~~~~~l~V~~~   99 (100)
T 2kdg_A           84 RAGEATFTVQLDVLAK   99 (100)
T ss_dssp             TTEEEEEEEEEEEECC
T ss_pred             CCCeEEEEEEEEEEec
Confidence            9999888888888653

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.41  E-value=1.4e-12  Score=114.55  Aligned_cols=91  Identities=20%  Similarity=0.294  Sum_probs=80.1

Q ss_pred             CCCeEEeccce-eeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEE
Q psy16863        747 KAPKFIEGLKS-CQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT  825 (1075)
Q Consensus       747 ~~p~~~~~~~~-~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~  825 (1075)
                      .+|.|+..+.+ ..+.+|+++.|.|.+. .|.|.+.|||+|..+..+.++.+... .....|.|.+++.+|+|.|+|.| 
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a-   82 (100)
T 2yuv_A            6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHK-GCQRILFINNCQMTDDSEYYVTA-   82 (100)
T ss_dssp             SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEE-TTEEEEEEEEECTTTCCEEEEEE-
T ss_pred             CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEec-CCEEEEEEcCCCcCcCEEEEEEE-
Confidence            58999988887 6788999999999999 79999999999999988888888644 44678999999999999999999 


Q ss_pred             eCCceEEEEEEEEEEecC
Q psy16863        826 NDFGQSITSCFLKLNVPK  843 (1075)
Q Consensus       826 N~~G~~~~s~~l~V~~~~  843 (1075)
                         |....++.|.|..+|
T Consensus        83 ---g~~~~~~~l~V~~~P   97 (100)
T 2yuv_A           83 ---GDEKCSTELFVRSGP   97 (100)
T ss_dssp             ---TTEEEEEEEEECCSC
T ss_pred             ---CCceEEEEEEEecCC
Confidence               777888889888654

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.41  E-value=1.3e-12  Score=136.38  Aligned_cols=171  Identities=16%  Similarity=0.238  Sum_probs=111.0

Q ss_pred             eecCceeeccCCeEEEEEEEecC--CCcEEEEEECC--E---ec--------------CCCCcEEEEEc--CCEEEEEEc
Q psy16863        354 RRLHDIAVKVGTRARLLVEIRSP--TEIKIHWYRND--R---KL--------------EENKIYRTQHD--GNFYFIDLS  410 (1075)
Q Consensus       354 ~~~~~~~v~~G~~v~l~C~~~g~--p~~~v~W~k~g--~---~l--------------~~~~~~~~~~~--g~~~~L~I~  410 (1075)
                      ..+..+.+.+|++++|.|.+.+.  +...+.|||..  .   .+              ....|+.+..+  .....|+|.
T Consensus         4 ~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   83 (248)
T 3u2s_H            4 VESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMN   83 (248)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             ecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEEC
Confidence            34567789999999999999762  35689999842  1   11              01246665543  456789999


Q ss_pred             ccCCCCceeEEEEEEeCCC----------------------ceeeEEEEEeecCCCCCCCeee-eecceEEecCCeEEEE
Q psy16863        411 SVSLFDSGRWTCLAENAVG----------------------RSHCSCELSVLVPKAYKAPFFT-KELEAILTEQGTVSLE  467 (1075)
Q Consensus       411 ~v~~~d~G~Y~C~a~n~~g----------------------~~~~s~~l~V~~~~~~~~p~~~-~~~~~~~~~g~~v~l~  467 (1075)
                      +++.+|+|.|.|.+.+..+                      .......|.|...+. .+|.+. ..+...+..|+.++|.
T Consensus        84 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~-~~P~v~~~~~~~~~~~g~~~~L~  162 (248)
T 3u2s_H           84 SLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSAST-KGPSVFPLAPSSKSTSGGTAALG  162 (248)
T ss_dssp             SCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCC-BCCEEEEECCC------CEEEEE
T ss_pred             CCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCC-CCCEEEEeCCCccccCCCcEEEE
Confidence            9999999999999987421                      112234566653222 234443 3333335578999999


Q ss_pred             EEEEC-CC-CCeEEEEeCCEecc---------CCCEE----EEEeCCCCCCCcEEEEEEEEecceeeEEEEEEE
Q psy16863        468 CKVMG-IP-TPQLIWYKDNKKIK---------AGDIF----ALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI  526 (1075)
Q Consensus       468 C~~~g-~p-~~~v~W~~~g~~l~---------~~~~~----~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~  526 (1075)
                      |.+.+ .| ...++|+++|..+.         .+..+    .|.+......| |.|+|.|.|..+.......+.
T Consensus       163 C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~  235 (248)
T 3u2s_H          163 CLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVE  235 (248)
T ss_dssp             EEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECC
T ss_pred             EEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEc
Confidence            99997 45 34899999987431         12222    46677777777 999999999987665554443

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=9e-13  Score=118.25  Aligned_cols=98  Identities=22%  Similarity=0.418  Sum_probs=84.9

Q ss_pred             CCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCC-CCcEEEEEc-CCEEEEEEcccCCCCceeEEEEE
Q psy16863        347 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEE-NKIYRTQHD-GNFYFIDLSSVSLFDSGRWTCLA  424 (1075)
Q Consensus       347 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~-~~~~~~~~~-g~~~~L~I~~v~~~d~G~Y~C~a  424 (1075)
                      ..+|.|...+....+.+|+.+.|.|.+.|.|.+.|.|+|+|..+.. ..++.+..+ +..+.|.|.+++.+|+|.|+|.|
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   85 (110)
T 2dm2_A            6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMA   85 (110)
T ss_dssp             SCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEE
T ss_pred             CCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEE
Confidence            3578888888899999999999999999999999999999999875 566666654 45568999999999999999999


Q ss_pred             EeCCCceeeEEEEEeecCCC
Q psy16863        425 ENAVGRSHCSCELSVLVPKA  444 (1075)
Q Consensus       425 ~n~~g~~~~s~~l~V~~~~~  444 (1075)
                      .|..|....++.|.|..++.
T Consensus        86 ~N~~g~~~~~~~l~V~~~~~  105 (110)
T 2dm2_A           86 ANPQGRISCTGRLMVQAVNS  105 (110)
T ss_dssp             ECTTCCEEECCCEEEECCSC
T ss_pred             EECCCeEEEEEEEEEECCCC
Confidence            99999998888888887653

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.41  E-value=5.1e-13  Score=120.55  Aligned_cols=90  Identities=24%  Similarity=0.452  Sum_probs=78.9

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .||.|...+.+..+.+|+++.|.|.+.+.  |.++|+|+|..+..+.++.+..+ ...+.|.|.+++.+|+|.|+|.|  
T Consensus        18 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a--   92 (113)
T 2edh_A           18 LPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQD-GARCELQIRGLVAEDAGEYLCMC--   92 (113)
T ss_dssp             SCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEE-TTEEEEEECSCCSTTCEEEEEEE--
T ss_pred             CCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEEC-CCEEEEEECCCChhhCEEEEEEe--
Confidence            46799888899999999999999999875  78999999999998888888754 45678999999999999999999  


Q ss_pred             CCceEEEEEEEEEEecC
Q psy16863        827 DFGQSITSCFLKLNVPK  843 (1075)
Q Consensus       827 ~~G~~~~s~~l~V~~~~  843 (1075)
                        |....++.|.|..+|
T Consensus        93 --~~~~~~~~l~V~~~p  107 (113)
T 2edh_A           93 --GKERTSAMLTVRAMP  107 (113)
T ss_dssp             --TTEEEEEEEEECCCC
T ss_pred             --CCCCEEEEEEEeCCC
Confidence              777888889988654

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.41  E-value=1.1e-12  Score=116.03  Aligned_cols=90  Identities=21%  Similarity=0.321  Sum_probs=77.0

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCC--cEEEEEeeCcEEEEEEccccCCCCeEEEEEEE
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESD--NVKILKETLGVCHLKIHALEVADQAEWKCIAT  825 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~  825 (1075)
                      |+.|...+.+..+.+|+++.|.|.+.+ |.+.+.|+|+|..+..+.  ++.+... .....|.|.+++.+|+|.|+|.|.
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~   84 (103)
T 1x44_A            7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVE-GKKHILIIEGATKADAAEYSVMTT   84 (103)
T ss_dssp             SCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEE-TTEEEEEEEEECTTTCSEEEEEET
T ss_pred             CceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEc-CCEEEEEECCCCcccCEEEEEEEC
Confidence            445888888999999999999999987 779999999999998887  6677644 346789999999999999999998


Q ss_pred             eCCceEEEEEEEEEEecC
Q psy16863        826 NDFGQSITSCFLKLNVPK  843 (1075)
Q Consensus       826 N~~G~~~~s~~l~V~~~~  843 (1075)
                      |    ...++.|.|..++
T Consensus        85 n----~~~~~~l~V~~~p   98 (103)
T 1x44_A           85 G----GQSSAKLSVDLKS   98 (103)
T ss_dssp             T----EEEEEEEEEECCC
T ss_pred             C----CcEEEEEEEeCCC
Confidence            8    4667888888764

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.40  E-value=3.3e-13  Score=119.77  Aligned_cols=94  Identities=18%  Similarity=0.297  Sum_probs=85.6

Q ss_pred             CCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEe
Q psy16863        347 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       347 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      ..+|.|...+.+..+.+|+++.|.|.+.|.|.+.|.|+|+|..+..+.++.+...+....|.|.++..+|+|.|+|.|.|
T Consensus        12 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   91 (106)
T 1nct_A           12 TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVEN   91 (106)
T ss_dssp             SCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBC
T ss_pred             CCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEe
Confidence            35788888999999999999999999999999999999999999888888888777778999999999999999999999


Q ss_pred             CCCceeeEEEEEee
Q psy16863        427 AVGRSHCSCELSVL  440 (1075)
Q Consensus       427 ~~g~~~~s~~l~V~  440 (1075)
                      ..|....++.|.|.
T Consensus        92 ~~G~~~~~~~l~V~  105 (106)
T 1nct_A           92 SEGKQEAEFTLTIQ  105 (106)
T ss_dssp             SSCBCCEEEEEEEC
T ss_pred             CCCeEEEEEEEEEE
Confidence            99998888877774

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=6.5e-14  Score=126.78  Aligned_cols=94  Identities=19%  Similarity=0.254  Sum_probs=81.5

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .++.|...+.+..+.+|+++.|.|.+.|.|.|.++|+|||..+..+.++.+.....+.+.|.|.+++.+|+|.|+|.|  
T Consensus        12 ~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~--   89 (115)
T 2cr6_A           12 RRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA--   89 (115)
T ss_dssp             SCCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEEE--
T ss_pred             CCCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEEE--
Confidence            456888899999999999999999999999999999999999998887776533345668999999999999999994  


Q ss_pred             CCceEEEEEEEEEEecCC
Q psy16863        827 DFGQSITSCFLKLNVPKH  844 (1075)
Q Consensus       827 ~~G~~~~s~~l~V~~~~~  844 (1075)
                        |....++.|.|..+|.
T Consensus        90 --g~~~~~~~L~V~~~p~  105 (115)
T 2cr6_A           90 --GDQRASAALRVTEKPS  105 (115)
T ss_dssp             --TTEECCEEEEEECCSS
T ss_pred             --CCeeEEEEEEEECCCc
Confidence              7778889999987654

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.40  E-value=6.3e-12  Score=130.05  Aligned_cols=188  Identities=13%  Similarity=0.139  Sum_probs=119.8

Q ss_pred             ccceeeccceeEEEEEecCC----CceEEEEe-cCCCeeeEE-ecC-CCc----cccCCCeEEEeeC--CeEEEEEcccC
Q psy16863        250 HDIAVKVGTRARLLVEIRSP----TEIKCQFD-LNNTIPFSF-RAQ-GDH----PIFGNRFRAINRD--GRTELNIRRVR  316 (1075)
Q Consensus       250 ~~~~v~~g~~~~l~c~~~~~----~~~~c~~~-~~~~~~~~w-~~~-~~~----~~~~~~~~~~~~~--~~~~L~I~~~~  316 (1075)
                      ..+.+.+|+.++|.|.+...    ..+.|.-. .+....+.. +.. +..    .....|+.+..+.  +...|+|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (230)
T 3n9g_H            8 GAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLR   87 (230)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCC
Confidence            34668899999999998642    22333211 112222221 111 111    1124577776543  56789999999


Q ss_pred             CCCCEEEEEEEEeCC-----e---eEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEec-CC-CcEEEEEEC
Q psy16863        317 RDDGGRYSVTASNES-----G---YSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS-PT-EIKIHWYRN  386 (1075)
Q Consensus       317 ~~d~G~Y~C~a~n~~-----g---~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g-~p-~~~v~W~k~  386 (1075)
                      .+|+|.|.|.+.+..     +   .....+.|.|......+|.+........+.+|+.++|.|.+.+ .| .+.+.|  +
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W--~  165 (230)
T 3n9g_H           88 SEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--N  165 (230)
T ss_dssp             GGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE--G
T ss_pred             hhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE--C
Confidence            999999999998753     1   1223456777654556677765455556679999999999977 44 568999  6


Q ss_pred             CEecCCCCc---EEEEEcCCE---EEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEee
Q psy16863        387 DRKLEENKI---YRTQHDGNF---YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL  440 (1075)
Q Consensus       387 g~~l~~~~~---~~~~~~g~~---~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~  440 (1075)
                      |..+.....   .....++..   ..|.|.....+| |.|+|.|.|..+.......+.|.
T Consensus       166 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~  224 (230)
T 3n9g_H          166 SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK  224 (230)
T ss_dssp             GGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCC
T ss_pred             CcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCC
Confidence            665543211   111122322   368899999999 99999999998776655555554

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.39  E-value=8.3e-13  Score=119.11  Aligned_cols=104  Identities=18%  Similarity=0.324  Sum_probs=88.8

Q ss_pred             eeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcc
Q psy16863        332 GYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSS  411 (1075)
Q Consensus       332 g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~  411 (1075)
                      |..+..+.|.|..   .||.|...+.+..+.+|+++.|.|.+.+.  +.++|||+|..+..+.++.+..++..+.|.|.+
T Consensus         5 g~~~~~~~l~V~~---~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~   79 (113)
T 2edh_A            5 SSGRTSAMLTVRA---LPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRG   79 (113)
T ss_dssp             CCCCCCCCCCCCC---SCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECS
T ss_pred             CCCcEEEEEEEEc---CCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECC
Confidence            3445556676664   46788888889999999999999999765  689999999999988999999899888999999


Q ss_pred             cCCCCceeEEEEEEeCCCceeeEEEEEeecCCC
Q psy16863        412 VSLFDSGRWTCLAENAVGRSHCSCELSVLVPKA  444 (1075)
Q Consensus       412 v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~  444 (1075)
                      +..+|+|.|+|.|    |....++.|.|..+|.
T Consensus        80 v~~~D~G~Y~C~a----~~~~~~~~l~V~~~p~  108 (113)
T 2edh_A           80 LVAEDAGEYLCMC----GKERTSAMLTVRAMPS  108 (113)
T ss_dssp             CCSTTCEEEEEEE----TTEEEEEEEEECCCCC
T ss_pred             CChhhCEEEEEEe----CCCCEEEEEEEeCCCC
Confidence            9999999999999    7778888899987653

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=1.8e-12  Score=117.87  Aligned_cols=95  Identities=13%  Similarity=0.168  Sum_probs=81.3

Q ss_pred             CCCeeee---ecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEE
Q psy16863        348 DAPAFIR---RLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLA  424 (1075)
Q Consensus       348 ~~p~~~~---~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a  424 (1075)
                      .+|.|..   ......+.+|+.+.|.|.+.|.|.+.|.|+|+|..+. ..++.+...+....|.|.++..+|+|.|+|.|
T Consensus        20 ~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   98 (118)
T 2e7c_A           20 EPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYELSV   98 (118)
T ss_dssp             EEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEECSSEEEEEESSCCTTTCEEEEEEE
T ss_pred             cCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEECCCeEEEEECCCChhcCEEEEEEE
Confidence            3666643   2467889999999999999999999999999999997 45666667777788999999999999999999


Q ss_pred             EeCCCceeeEEEEEeecCC
Q psy16863        425 ENAVGRSHCSCELSVLVPK  443 (1075)
Q Consensus       425 ~n~~g~~~~s~~l~V~~~~  443 (1075)
                      .|..|....++.|.|..+|
T Consensus        99 ~N~~G~~~~~~~l~V~~~P  117 (118)
T 2e7c_A           99 QIENMKDTATIRIRVVEKA  117 (118)
T ss_dssp             ECSSCEECCEEEEEEECCC
T ss_pred             EeCCCeEEEEEEEEEEcCC
Confidence            9999998888888887654

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.39  E-value=3.8e-14  Score=130.00  Aligned_cols=97  Identities=21%  Similarity=0.282  Sum_probs=81.7

Q ss_pred             CCCCeEEeccceeeeecCCeEEEEEEEecCCCCe-EEEEECCEEeec--CCcEEEEEe-eCc--EEEEEEccccCCCC-e
Q psy16863        746 NKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPK-VSWFRDDQQVVE--SDNVKILKE-TLG--VCHLKIHALEVADQ-A  818 (1075)
Q Consensus       746 ~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~-v~W~k~g~~i~~--~~~~~~~~~-~~~--~~~L~I~~~~~~D~-G  818 (1075)
                      ..||.|.. +....+.+|+.+.|.|.+.|.|.|. |+|+|++..+..  ..++.+... ..+  ...|.|.+++.+|. |
T Consensus        12 ~~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G   90 (122)
T 2cry_A           12 NGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQT   90 (122)
T ss_dssp             CSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHS
T ss_pred             ecCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCChhhCCc
Confidence            36888888 7788899999999999999999997 999999999875  467766422 222  56899999999999 9


Q ss_pred             EEEEEEEeCCceEEEEEEEEEEecC
Q psy16863        819 EWKCIATNDFGQSITSCFLKLNVPK  843 (1075)
Q Consensus       819 ~Y~C~A~N~~G~~~~s~~l~V~~~~  843 (1075)
                      .|+|.|.|.+|.+..++.|.|..++
T Consensus        91 ~Y~C~a~N~~G~~~~~~~l~V~~~~  115 (122)
T 2cry_A           91 IYNCTAWNSFGSDTEIIRLKEQGSE  115 (122)
T ss_dssp             CEEEEEECSSCEEEEEECCCCSCSS
T ss_pred             eEEEEEECCCCeEEEEEEEEECCCC
Confidence            9999999999999888888877543

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=1.5e-12  Score=114.41  Aligned_cols=93  Identities=18%  Similarity=0.325  Sum_probs=79.9

Q ss_pred             CCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCC-CCcEEEEEcCCEEEEEEcccCCCCceeEEEEEE
Q psy16863        347 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEE-NKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAE  425 (1075)
Q Consensus       347 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~-~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~  425 (1075)
                      ..+|.|...+....+.+|+++.|.|.+.|.|.+.|.|+|+|..+.. ..++.+..++   .|.|.+++.+|+|.|+|.|.
T Consensus         6 ~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~a~   82 (100)
T 2edj_A            6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG---TLQIKNLRISDTGTYTCVAT   82 (100)
T ss_dssp             CSSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTTC---CEEEESCCTTTCCEEEEEEE
T ss_pred             CCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCCC---EEEEccCCcccCEEEEEEEE
Confidence            4588898888899999999999999999999999999999998873 4454444444   48999999999999999999


Q ss_pred             eCCCceeeEEEEEeecC
Q psy16863        426 NAVGRSHCSCELSVLVP  442 (1075)
Q Consensus       426 n~~g~~~~s~~l~V~~~  442 (1075)
                      |..|....++.|.|..+
T Consensus        83 n~~g~~~~~~~l~V~~~   99 (100)
T 2edj_A           83 SSSGETSWSAVLDVTES   99 (100)
T ss_dssp             CSSCCCBCCEEEEEESC
T ss_pred             cCCCCEEEEEEEEEecC
Confidence            99999988888888754

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.38  E-value=2.7e-12  Score=112.75  Aligned_cols=91  Identities=25%  Similarity=0.489  Sum_probs=81.9

Q ss_pred             CCCeeeeecCc-eeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEe
Q psy16863        348 DAPAFIRRLHD-IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       348 ~~p~~~~~~~~-~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      .+|.|...+.+ ..+.+|++++|.|.+. .|.+.+.|||||..+..+.++.+..++..+.|.|.++..+|+|.|+|.|  
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a--   82 (100)
T 2yuv_A            6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA--   82 (100)
T ss_dssp             SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE--
T ss_pred             CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE--
Confidence            47888888876 6889999999999997 6889999999999998888999988998889999999999999999999  


Q ss_pred             CCCceeeEEEEEeecCC
Q psy16863        427 AVGRSHCSCELSVLVPK  443 (1075)
Q Consensus       427 ~~g~~~~s~~l~V~~~~  443 (1075)
                        |....++.|.|..+|
T Consensus        83 --g~~~~~~~l~V~~~P   97 (100)
T 2yuv_A           83 --GDEKCSTELFVRSGP   97 (100)
T ss_dssp             --TTEEEEEEEEECCSC
T ss_pred             --CCceEEEEEEEecCC
Confidence              777888889888765

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=1e-12  Score=116.22  Aligned_cols=91  Identities=18%  Similarity=0.321  Sum_probs=79.8

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .||.|...+.+..+.+|+++.|.|.+.+ |.+.+.|+|+|..+..+.++.+...+ ..+.|.|.+++.+|+|.|+|.|.|
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n   84 (103)
T 2edf_A            7 GPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEG-TMAMLVIRGASLKDAGEYTCEVEA   84 (103)
T ss_dssp             CCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEET-TEEEEEESSCCTTTCSEEEEECSS
T ss_pred             CCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECC-CEEEEEECCCCcccCEEEEEEEcc
Confidence            5889999999999999999999999997 88899999999999888888877544 477899999999999999999999


Q ss_pred             CCceEEEEEEEEEEecC
Q psy16863        827 DFGQSITSCFLKLNVPK  843 (1075)
Q Consensus       827 ~~G~~~~s~~l~V~~~~  843 (1075)
                          ...++.|.|..++
T Consensus        85 ----~~~~~~l~V~~~p   97 (103)
T 2edf_A           85 ----SKSTASLHVEEKA   97 (103)
T ss_dssp             ----CEEEEEEEECCCS
T ss_pred             ----CCcEEEEEEeCCC
Confidence                3567788887654

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.38  E-value=2.3e-12  Score=115.21  Aligned_cols=96  Identities=7%  Similarity=0.194  Sum_probs=79.3

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCE-Eee-------cCCcEEEEEeeCcEEEEEEccccCCCCe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQ-QVV-------ESDNVKILKETLGVCHLKIHALEVADQA  818 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~-~i~-------~~~~~~~~~~~~~~~~L~I~~~~~~D~G  818 (1075)
                      .+|.|...+.+..+.+|+++.|.|.+.+.|.+.+.|+|++. .+.       ...++.+.....+...|.|.+++.+|+|
T Consensus         5 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G   84 (108)
T 3m45_A            5 GSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEG   84 (108)
T ss_dssp             ---CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGCE
T ss_pred             cCCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHCe
Confidence            46778888889999999999999999999999999999876 332       2347776655556789999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEEecC
Q psy16863        819 EWKCIATNDFGQSITSCFLKLNVPK  843 (1075)
Q Consensus       819 ~Y~C~A~N~~G~~~~s~~l~V~~~~  843 (1075)
                      .|+|.|.| .|....++.|.|..+|
T Consensus        85 ~Y~C~~~n-~~~~~~~~~L~V~~~P  108 (108)
T 3m45_A           85 QYTCSLFT-MPVKTSKAYLTVLGVP  108 (108)
T ss_dssp             EEEEEECS-SSCEEEEEEEEEECCC
T ss_pred             EEEEEEEc-CCCcEEEEEEEEEcCC
Confidence            99999999 8988889999988653

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.37  E-value=1.6e-11  Score=118.96  Aligned_cols=148  Identities=17%  Similarity=0.167  Sum_probs=98.5

Q ss_pred             ceeeeecCCeEEEEEEEecCCCCe-EEEEEC-CEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEE
Q psy16863        756 KSCQATVNEEFKFTVQVSISPEPK-VSWFRD-DQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT  833 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g~p~p~-v~W~k~-g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~  833 (1075)
                      ++..|..|+++.|.|.+. .+.|. +.|.-- ++.+.       ...+.+...|.|.+++. | |.|.|.+.+.......
T Consensus         7 ~~~~V~~G~Sv~l~Cs~~-c~~p~~~~~~t~l~~~~~-------~~~~~~~~~l~l~~vs~-~-g~y~C~~~c~~~~~~~   76 (185)
T 1iam_A            7 SKVILPRGGSVLVTCSTS-CDQPKLLGIETPLPKKEL-------LLPGNNRKVYELSNVQE-D-SQPMCYSNCPDGQSTA   76 (185)
T ss_dssp             SEEEEETTEEEEEEEEEC-SSSCSEEEEECSSCEEEE-------CSSSSSEEEEEEEEECS-C-BCCEEEEECSSCEEEE
T ss_pred             CCcEEeCCCCEEEEEEcc-CCCCccceEEeeCCCccE-------eccCCceeEEEEEecCc-C-CEEEEEEECCCCceEE
Confidence            445689999999999997 46665 666421 11111       01123445789999984 4 9999999776555666


Q ss_pred             EEEEEEEecCCCCCCeeeeecceeecCCCeEEEEEEEEccCCC---eeEEEECCEEcCC------CCeeEEEECCCCcee
Q psy16863        834 SCFLKLNVPKHYKKPKFLEELKAVLSEGGAVNLECKVIGVPQP---TLKWFKDGRELKA------GDIHKIISGEDGTCC  904 (1075)
Q Consensus       834 s~~l~V~~~~~~~~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p---~v~W~k~g~~l~~------~~~~~i~~~~~~~~d  904 (1075)
                      ++.|.|..+|..  +. +......+.+|+.++|.|.+.|..++   +|+|||++++|..      .....+.+. ....|
T Consensus        77 ~~~l~V~~~P~~--v~-i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~~~~~~~~tl~~~-~~reD  152 (185)
T 1iam_A           77 KTFLTVYWTPER--VE-LAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVL-VRRDH  152 (185)
T ss_dssp             ECEEEEEBCCSE--EE-ECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEE-CCSSC
T ss_pred             EEEEEEeCCCCC--CE-EccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccCCCccccEEEEEe-ceecc
Confidence            777888765432  22 22223347899999999999985443   4899999999863      112233333 33345


Q ss_pred             eE-EEEEEEEeCCe
Q psy16863        905 LG-IYTCEAHNCMG  917 (1075)
Q Consensus       905 ~G-~Y~C~a~N~~G  917 (1075)
                      .| .|+|+|.|.+|
T Consensus       153 ~g~~~sC~A~~~l~  166 (185)
T 1iam_A          153 HGAQFSCRTELDLR  166 (185)
T ss_dssp             SSCEEEEEEEEECG
T ss_pred             CCCeEEEEEEecCc
Confidence            55 99999999876

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.37  E-value=2.1e-12  Score=114.17  Aligned_cols=91  Identities=18%  Similarity=0.383  Sum_probs=79.4

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCC--cEEEEEcCCEEEEEEcccCCCCceeEEEEEEe
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENK--IYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~--~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      |+.|...+.++.+.+|++++|.|.+.+ |.+.|.|||+|..+..+.  ++.+..++....|.|.++..+|+|.|+|.|.|
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n   85 (103)
T 1x44_A            7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG   85 (103)
T ss_dssp             SCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT
T ss_pred             CceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC
Confidence            445888888999999999999999977 669999999999998877  77888888888999999999999999999977


Q ss_pred             CCCceeeEEEEEeecCCC
Q psy16863        427 AVGRSHCSCELSVLVPKA  444 (1075)
Q Consensus       427 ~~g~~~~s~~l~V~~~~~  444 (1075)
                          ...++.|.|..++.
T Consensus        86 ----~~~~~~l~V~~~p~   99 (103)
T 1x44_A           86 ----GQSSAKLSVDLKSG   99 (103)
T ss_dssp             ----EEEEEEEEEECCCS
T ss_pred             ----CcEEEEEEEeCCCC
Confidence                46678888887653

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=1.8e-12  Score=114.65  Aligned_cols=92  Identities=24%  Similarity=0.448  Sum_probs=82.1

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      .||.|...+.+..+.+|++++|.|.+.+ |.+.|.|+|+|..+..+.++.+..++..+.|.|.++..+|+|.|+|.|.| 
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n-   84 (103)
T 2edf_A            7 GPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA-   84 (103)
T ss_dssp             CCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS-
T ss_pred             CCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc-
Confidence            5788888889999999999999999987 77899999999999888899998899888999999999999999999988 


Q ss_pred             CCceeeEEEEEeecCCC
Q psy16863        428 VGRSHCSCELSVLVPKA  444 (1075)
Q Consensus       428 ~g~~~~s~~l~V~~~~~  444 (1075)
                         ...++.|.|..+|.
T Consensus        85 ---~~~~~~l~V~~~p~   98 (103)
T 2edf_A           85 ---SKSTASLHVEEKAS   98 (103)
T ss_dssp             ---CEEEEEEEECCCSS
T ss_pred             ---CCcEEEEEEeCCCC
Confidence               35677888877654

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=3.3e-13  Score=118.86  Aligned_cols=90  Identities=16%  Similarity=0.232  Sum_probs=77.1

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCC----cEEEEEeeCcEEEEEEccccCCCCeEEEE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESD----NVKILKETLGVCHLKIHALEVADQAEWKC  822 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~----~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C  822 (1075)
                      .||.|...+.+..+.+|+++.|.|.+.+.| |.+.|+|||.++..+.    ++.+... .....|.|.+++.+|+|.|+|
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C   84 (101)
T 2edk_A            7 GPVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKD-GKRHILIFSDVVQEDRGRYQV   84 (101)
T ss_dssp             CCCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEEC-SSEEEEECSSCCGGGCSBEEE
T ss_pred             CCCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEEC-CCEEEEEECCCChhhCEEEEE
Confidence            578999999999999999999999999988 9999999999998776    6676643 456789999999999999999


Q ss_pred             EEEeCCceEEEEEEEEEEec
Q psy16863        823 IATNDFGQSITSCFLKLNVP  842 (1075)
Q Consensus       823 ~A~N~~G~~~~s~~l~V~~~  842 (1075)
                      .|.|    ...++.|.|..+
T Consensus        85 ~a~n----~~~~~~l~V~~~  100 (101)
T 2edk_A           85 ITNG----GQCEAELIVEEK  100 (101)
T ss_dssp             ECSS----CEECCBEEEECC
T ss_pred             EEcC----CcEEEEEEEeCC
Confidence            9988    345677777754

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.36  E-value=9.1e-13  Score=117.20  Aligned_cols=91  Identities=14%  Similarity=0.196  Sum_probs=79.2

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .+|.|...+.+..+.+|+++.|.|.+.+.|.+ +.|+|+|..+..+.++.+... .....|.|.+++.+|+|.|+|.|.|
T Consensus         7 ~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n   84 (106)
T 2dlt_A            7 GQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHV-GRFHKLVIDDVRPEDEGDYTFVPDG   84 (106)
T ss_dssp             CCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEE-TTEEEEEESSCCTTTCSCEEEEEET
T ss_pred             CCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEe-CCEEEEEECCCCcCCCEEEEEEEcc
Confidence            68999999999999999999999999998887 999999999988888887644 4567899999999999999999999


Q ss_pred             CCceEEEEEEEEEEe
Q psy16863        827 DFGQSITSCFLKLNV  841 (1075)
Q Consensus       827 ~~G~~~~s~~l~V~~  841 (1075)
                      .  ....++.|.|..
T Consensus        85 ~--~~~~~~~l~V~~   97 (106)
T 2dlt_A           85 Y--ALSLSAKLNFLE   97 (106)
T ss_dssp             S--CCCCCBCEEEEC
T ss_pred             C--CceEEEEEEEEE
Confidence            8  444566777764

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.36  E-value=1.8e-12  Score=115.28  Aligned_cols=92  Identities=21%  Similarity=0.327  Sum_probs=80.7

Q ss_pred             CCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEe
Q psy16863        347 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       347 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      ..+|.|...+.+..+.+|+++.|.|.+.+.|.+ +.|||+|..+..+.++.+..++..+.|.|.++..+|+|.|+|.|.|
T Consensus         6 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   84 (106)
T 2dlt_A            6 SGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDG   84 (106)
T ss_dssp             CCCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEET
T ss_pred             CCCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEcc
Confidence            358889999999999999999999999888776 9999999999888888888889888999999999999999999999


Q ss_pred             CCCceeeEEEEEeec
Q psy16863        427 AVGRSHCSCELSVLV  441 (1075)
Q Consensus       427 ~~g~~~~s~~l~V~~  441 (1075)
                      .  ....++.|.|..
T Consensus        85 ~--~~~~~~~l~V~~   97 (106)
T 2dlt_A           85 Y--ALSLSAKLNFLE   97 (106)
T ss_dssp             S--CCCCCBCEEEEC
T ss_pred             C--CceEEEEEEEEE
Confidence            8  344456666653

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.36  E-value=3.3e-12  Score=129.38  Aligned_cols=158  Identities=16%  Similarity=0.246  Sum_probs=104.9

Q ss_pred             eeeecCceeeccCCeEEEEEEEecCCCcEEEEEECC--E---ec-------CCCCcEEEEEc---CCEEEEEEcccCCCC
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRND--R---KL-------EENKIYRTQHD---GNFYFIDLSSVSLFD  416 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g--~---~l-------~~~~~~~~~~~---g~~~~L~I~~v~~~d  416 (1075)
                      +...+..+.+.+|++++|.|.+.+.+ +.+.|||.+  .   .+       ....|+.+..+   .....|.|.+++.+|
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D   82 (207)
T 1ypz_E            4 VEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLED   82 (207)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGG
T ss_pred             cEECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHH
Confidence            34455677899999999999997654 589999953  2   11       12356666654   566789999999999


Q ss_pred             ceeEEEEEEeCCC---------c--eeeEEEEEeecCCC-CCCCeeeeecceEEecCCeEEEEEEEECC-CC-CeEEEEe
Q psy16863        417 SGRWTCLAENAVG---------R--SHCSCELSVLVPKA-YKAPFFTKELEAILTEQGTVSLECKVMGI-PT-PQLIWYK  482 (1075)
Q Consensus       417 ~G~Y~C~a~n~~g---------~--~~~s~~l~V~~~~~-~~~p~~~~~~~~~~~~g~~v~l~C~~~g~-p~-~~v~W~~  482 (1075)
                      +|.|.|.+.+..+         .  ......|.|..... ..+|.+..      ..+ .+.|.|.+.|. |. +.++|++
T Consensus        83 ~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P~v~~------~~~-~~~l~C~~~g~~P~~~~v~W~~  155 (207)
T 1ypz_E           83 SGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFI------MKN-GTNVACLVKDFYPKEVTISLRS  155 (207)
T ss_dssp             CEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCCEEEE------EEE-TTEEEEEEEEESSSCCEEEEEC
T ss_pred             CEEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCCCCeEEE------eCC-CCeEEEEEeeEeCCCeEEEEec
Confidence            9999999998642         1  11235677764321 12232221      111 27999999875 54 6999999


Q ss_pred             CCEeccCC---------CEEEEEeCCCCCCCcEEEEEEEEecceee
Q psy16863        483 DNKKIKAG---------DIFALTANPKDPSSLGTYTCEAVNCMGAA  519 (1075)
Q Consensus       483 ~g~~l~~~---------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  519 (1075)
                      + +.+..+         ..+.+. ......|.|.|+|.|.|..+..
T Consensus       156 ~-~~l~~~~~~~~~~~~g~y~~~-~~~~~~~~~~ytC~v~~~~~~~  199 (207)
T 1ypz_E          156 S-KKIVEFDPAIVISPSGKYSAV-KLGQYGDSNSVTCSVQHNSETV  199 (207)
T ss_dssp             S-SEEEECCCEEEECTTSSEEEE-ECEEESSTTTCEEEEEETTEEE
T ss_pred             C-CcccCCccceEEcCCCcEEEE-EeecccCCCcEEEEEEECCccE
Confidence            9 666422         233333 2223366899999999987654

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=1.9e-12  Score=114.73  Aligned_cols=92  Identities=21%  Similarity=0.285  Sum_probs=77.7

Q ss_pred             CCCeEEeccce---eeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEE
Q psy16863        747 KAPKFIEGLKS---CQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCI  823 (1075)
Q Consensus       747 ~~p~~~~~~~~---~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~  823 (1075)
                      .+|.++..+..   ..+.+|+++.|.|.+.+.|.+ +.|+|+|+.+..+.++.+... .....|.|.+++.+|+|.|+|.
T Consensus         6 ~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~   83 (104)
T 2e6p_A            6 SGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMD-GRKHRLILPEAKVQDSGEFECR   83 (104)
T ss_dssp             SSSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEE-TTEEEEEESSCCTTTCEEEEEE
T ss_pred             CCCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeC-CCEEEEEECCCChhhCEEEEEE
Confidence            46777666665   789999999999999999998 999999999988888877643 4567899999999999999999


Q ss_pred             EEeCCceEEEEEEEEEEecCC
Q psy16863        824 ATNDFGQSITSCFLKLNVPKH  844 (1075)
Q Consensus       824 A~N~~G~~~~s~~l~V~~~~~  844 (1075)
                      |.|..+    ++.|.|.++|.
T Consensus        84 a~n~~~----~~~l~V~~~P~  100 (104)
T 2e6p_A           84 TEGVSA----FFGVTVQDPSG  100 (104)
T ss_dssp             CSSCCC----CEEEEEECCCC
T ss_pred             ECCceE----EEEEEEcCCCC
Confidence            999855    56788887653

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.36  E-value=3.2e-12  Score=110.97  Aligned_cols=88  Identities=22%  Similarity=0.268  Sum_probs=76.9

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .+|.|...+.+..+.+|+++.|.|.+ +.|.+.+.|+|+|..+..+.++.+... .....|.|.+++.+|+|.|+|.|  
T Consensus         7 ~~~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a--   82 (95)
T 2k1m_A            7 PVSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATE-GTRHTLTVREVGPADQGSYAVIA--   82 (95)
T ss_dssp             CCCCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEE-TTEEEEEESSCCTTCCSEEEEEE--
T ss_pred             CCCeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEc-CCEEEEEEcCCCcccCEEEEEEE--
Confidence            35788888889999999999999999 789999999999999998888887654 34678999999999999999999  


Q ss_pred             CCceEEEEEEEEEE
Q psy16863        827 DFGQSITSCFLKLN  840 (1075)
Q Consensus       827 ~~G~~~~s~~l~V~  840 (1075)
                        |....++.|.|.
T Consensus        83 --g~~~~~~~l~V~   94 (95)
T 2k1m_A           83 --GSSKVKFDLKVI   94 (95)
T ss_dssp             --TTEEEEEEEEEE
T ss_pred             --CCceEEEEEEEe
Confidence              667777888775

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.36  E-value=5.9e-12  Score=112.81  Aligned_cols=83  Identities=16%  Similarity=0.171  Sum_probs=70.7

Q ss_pred             ccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEc-----C--CEEEEEEcccCCCCceeEEEEEEeCCCceeeE
Q psy16863        362 KVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHD-----G--NFYFIDLSSVSLFDSGRWTCLAENAVGRSHCS  434 (1075)
Q Consensus       362 ~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~-----g--~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s  434 (1075)
                      ..+..+.|.|.+.|.|.|+|+|+|||++|..+.++.+...     +  ....|.|.+++..|+|.|+|.|+|..|....+
T Consensus        13 ~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t   92 (126)
T 1he7_A           13 VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS   92 (126)
T ss_dssp             CCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             ccCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEE
Confidence            3678899999999999999999999999998877544322     1  23579999999999999999999999999999


Q ss_pred             EEEEeecCCC
Q psy16863        435 CELSVLVPKA  444 (1075)
Q Consensus       435 ~~l~V~~~~~  444 (1075)
                      +.|.|...|.
T Consensus        93 ~~l~v~~~P~  102 (126)
T 1he7_A           93 IMAAFMDNPF  102 (126)
T ss_dssp             EEECCCSCTT
T ss_pred             EEEEEEcCCC
Confidence            8898887653

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.36  E-value=3.5e-12  Score=131.40  Aligned_cols=164  Identities=15%  Similarity=0.262  Sum_probs=104.1

Q ss_pred             eeeeecCCeEEEEEEEecC--CCCeEEEEECC--E---Ee---e-----------cCCcEEEEEee-CcEEEEEEccccC
Q psy16863        757 SCQATVNEEFKFTVQVSIS--PEPKVSWFRDD--Q---QV---V-----------ESDNVKILKET-LGVCHLKIHALEV  814 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~g~--p~p~v~W~k~g--~---~i---~-----------~~~~~~~~~~~-~~~~~L~I~~~~~  814 (1075)
                      ...+.+|++++|.|.+.+.  +...+.|||..  .   .+   .           ...|+.+..+. .+.+.|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (226)
T 3mlr_H            9 GEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQA   88 (226)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCG
T ss_pred             CEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCc
Confidence            3568899999999999863  35689999842  1   11   0           12466665443 3578899999999


Q ss_pred             CCCeEEEEEEEeCCc-------eEE--EEEEEEEEecCCCCCCeee-eecceeecCCCeEEEEEEEEcc-C-CCeeEEEE
Q psy16863        815 ADQAEWKCIATNDFG-------QSI--TSCFLKLNVPKHYKKPKFL-EELKAVLSEGGAVNLECKVIGV-P-QPTLKWFK  882 (1075)
Q Consensus       815 ~D~G~Y~C~A~N~~G-------~~~--~s~~l~V~~~~~~~~p~~~-~~~~~~~~~g~~~~L~C~v~g~-p-~p~v~W~k  882 (1075)
                      +|+|.|.|.+.|..+       ...  ....|.|...+ ..+|.+. ......+.+|+.++|.|.+.+. | .+.++|  
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~-~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W--  165 (226)
T 3mlr_H           89 SDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGT-TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--  165 (226)
T ss_dssp             GGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCC-CBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEEE--
T ss_pred             ccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCC-CCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEEE--
Confidence            999999999987531       011  12345554322 2344443 2222234589999999999985 3 357999  


Q ss_pred             CCEEcCC-----------CCee----EEEECCCCceeeEEEEEEEEeCCeeEEEEEE
Q psy16863        883 DGRELKA-----------GDIH----KIISGEDGTCCLGIYTCEAHNCMGTTSSSAA  924 (1075)
Q Consensus       883 ~g~~l~~-----------~~~~----~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~  924 (1075)
                      +|..+..           +..+    .|.+......| |.|+|.|.|..+.......
T Consensus       166 ~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~  221 (226)
T 3mlr_H          166 NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKK  221 (226)
T ss_dssp             GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEE
T ss_pred             CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCeEEE
Confidence            5443321           1112    23333333446 9999999999887655443

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.36  E-value=3.7e-12  Score=115.81  Aligned_cols=94  Identities=15%  Similarity=0.164  Sum_probs=74.4

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeC---cEEEEEEccccCCCCeEEEEE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETL---GVCHLKIHALEVADQAEWKCI  823 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~  823 (1075)
                      .||.+.... ...  ..+...|.|.+.|.|.|.++|+|+|+.+..+.++.+.....   ....|.|.+++.+|+|.|+|.
T Consensus         7 ~pP~i~~~~-~~~--~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   83 (118)
T 1wwc_A            7 YPPRVVSLE-EPE--LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLI   83 (118)
T ss_dssp             CCCCCCCCC-CCC--CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEE
T ss_pred             cCCceeccC-CCe--eccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEEEEEE
Confidence            577765542 222  23667899999999999999999999998887666544321   245899999999999999999


Q ss_pred             EEeCCceEEEEEEEEEEecC
Q psy16863        824 ATNDFGQSITSCFLKLNVPK  843 (1075)
Q Consensus       824 A~N~~G~~~~s~~l~V~~~~  843 (1075)
                      |.|.+|.+.+++.|.|..+|
T Consensus        84 a~N~~G~~~~~~~l~v~~~P  103 (118)
T 1wwc_A           84 AKNPLGTANQTINGHFLKEP  103 (118)
T ss_dssp             EEETTEEEEEEEEECCSCCC
T ss_pred             EECCCCeEeeEEEEEEccCC
Confidence            99999999888888776543

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.35  E-value=4.7e-12  Score=121.34  Aligned_cols=97  Identities=24%  Similarity=0.460  Sum_probs=85.5

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEc-CCEEEEEEcccCCCCceeEEEEEEe
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHD-GNFYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~-g~~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      .+|.|...+.+..+.+|+.++|.|.+.|.|.+.|.|||+|..+..+.++.+... +....|.|.+++.+|+|.|+|.|.|
T Consensus        40 ~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N  119 (154)
T 1fhg_A           40 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN  119 (154)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEEE
Confidence            478888888889999999999999999999999999999999988888777643 3457899999999999999999999


Q ss_pred             CCCceeeEEEEEeecCCC
Q psy16863        427 AVGRSHCSCELSVLVPKA  444 (1075)
Q Consensus       427 ~~g~~~~s~~l~V~~~~~  444 (1075)
                      ..|....++.|.|..++.
T Consensus       120 ~~G~~~~~~~l~V~~~p~  137 (154)
T 1fhg_A          120 SLGEATCTAELLVETMGK  137 (154)
T ss_dssp             TTEEEEEEEEEEEECC--
T ss_pred             CCCeEEEEEEEEEeCcCc
Confidence            999999899999987764

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=1.9e-12  Score=116.11  Aligned_cols=98  Identities=19%  Similarity=0.350  Sum_probs=84.5

Q ss_pred             CCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEE-EcCCEEEEEEcccCCCCceeEEEEEE
Q psy16863        347 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQ-HDGNFYFIDLSSVSLFDSGRWTCLAE  425 (1075)
Q Consensus       347 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~-~~g~~~~L~I~~v~~~d~G~Y~C~a~  425 (1075)
                      ..+|.|...+..+.+.+|+.++|.|.+.|.|.+.|.|+|+|..+....+..+. ..+....|.|.+++.+|+|.|+|.|.
T Consensus         7 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   86 (110)
T 2dm3_A            7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIAT   86 (110)
T ss_dssp             CCCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEE
T ss_pred             CCCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEE
Confidence            35889998889999999999999999999999999999999998776654433 34445679999999999999999999


Q ss_pred             eCCCceeeEEEEEeecCCC
Q psy16863        426 NAVGRSHCSCELSVLVPKA  444 (1075)
Q Consensus       426 n~~g~~~~s~~l~V~~~~~  444 (1075)
                      |..|....++.|.|..++.
T Consensus        87 n~~g~~~~~~~l~V~~~p~  105 (110)
T 2dm3_A           87 NRAGQNSFSLELVVAAKES  105 (110)
T ss_dssp             CSSCEEEECCEEEEECCCC
T ss_pred             CCCCEEEEEEEEEEeCCCC
Confidence            9999988888888887654

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=6.6e-13  Score=116.92  Aligned_cols=90  Identities=27%  Similarity=0.451  Sum_probs=78.2

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCC----cEEEEEcCCEEEEEEcccCCCCceeEEEE
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENK----IYRTQHDGNFYFIDLSSVSLFDSGRWTCL  423 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~----~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~  423 (1075)
                      .||.|...+.+..+.+|++++|.|.+.+.| +.+.|||||..+..+.    ++.+..++..+.|.|.++..+|+|.|+|.
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~   85 (101)
T 2edk_A            7 GPVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVI   85 (101)
T ss_dssp             CCCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEE
T ss_pred             CCCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEEE
Confidence            578888888999999999999999998888 9999999999998766    66888888888999999999999999999


Q ss_pred             EEeCCCceeeEEEEEeecC
Q psy16863        424 AENAVGRSHCSCELSVLVP  442 (1075)
Q Consensus       424 a~n~~g~~~~s~~l~V~~~  442 (1075)
                      |.|    ...++.|.|..+
T Consensus        86 a~n----~~~~~~l~V~~~  100 (101)
T 2edk_A           86 TNG----GQCEAELIVEEK  100 (101)
T ss_dssp             CSS----CEECCBEEEECC
T ss_pred             EcC----CcEEEEEEEeCC
Confidence            986    344566777654

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.34  E-value=3.6e-11  Score=116.48  Aligned_cols=151  Identities=15%  Similarity=0.147  Sum_probs=102.6

Q ss_pred             cCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEE-EEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeE
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRT-QHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCS  434 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~-~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s  434 (1075)
                      +.+..|.+|+++.|.|.+....+..+.|.-.   +.   +... ........|.|.+++. | |.|.|.+.........+
T Consensus         6 P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~---l~---~~~~~~~~~~~~~l~l~~vs~-~-g~y~C~~~c~~~~~~~~   77 (185)
T 1iam_A            6 PSKVILPRGGSVLVTCSTSCDQPKLLGIETP---LP---KKELLLPGNNRKVYELSNVQE-D-SQPMCYSNCPDGQSTAK   77 (185)
T ss_dssp             SSEEEEETTEEEEEEEEECSSSCSEEEEECS---SC---EEEECSSSSSEEEEEEEEECS-C-BCCEEEEECSSCEEEEE
T ss_pred             CCCcEEeCCCCEEEEEEccCCCCccceEEee---CC---CccEeccCCceeEEEEEecCc-C-CEEEEEEECCCCceEEE
Confidence            3556799999999999996544445777521   10   1111 1112345688999983 4 99999997664555677


Q ss_pred             EEEEeecCCCCCCCeeeeecceEEecCCeEEEEEEEEC-CCCC--eEEEEeCCEeccC------CCEEEEEeCCCCCCCc
Q psy16863        435 CELSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMG-IPTP--QLIWYKDNKKIKA------GDIFALTANPKDPSSL  505 (1075)
Q Consensus       435 ~~l~V~~~~~~~~p~~~~~~~~~~~~g~~v~l~C~~~g-~p~~--~v~W~~~g~~l~~------~~~~~l~i~~~~~~d~  505 (1075)
                      +.|.|..+|..   ..+......+.+|+.++|.|.+.| .|..  .|+|||+++++..      ....+|++.....+|.
T Consensus        78 ~~l~V~~~P~~---v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~~~~~~~~tl~~~~~reD~g  154 (185)
T 1iam_A           78 TFLTVYWTPER---VELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHG  154 (185)
T ss_dssp             CEEEEEBCCSE---EEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSS
T ss_pred             EEEEEeCCCCC---CEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccCCCccccEEEEEeceeccCC
Confidence            77888776542   222222335889999999999998 4553  5899999999853      2234667666555666


Q ss_pred             EEEEEEEEecce
Q psy16863        506 GTYTCEAVNCMG  517 (1075)
Q Consensus       506 G~Y~C~a~n~~g  517 (1075)
                      ..|+|+|.|..+
T Consensus       155 ~~~sC~A~~~l~  166 (185)
T 1iam_A          155 AQFSCRTELDLR  166 (185)
T ss_dssp             CEEEEEEEEECG
T ss_pred             CeEEEEEEecCc
Confidence            699999999765

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.34  E-value=1.3e-12  Score=116.89  Aligned_cols=94  Identities=16%  Similarity=0.283  Sum_probs=72.6

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      .+|.|...+.+..+.+|+.+.|.|.+.|.|.+.+.|+|+|..+....++.+...+.  .|.|.+++.+|+|.|+|.|.|.
T Consensus         9 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~a~n~   86 (108)
T 3kvq_A            9 VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNR--NLTIRRVRKEDEGLYTCQACSV   86 (108)
T ss_dssp             --CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTTT--EEEECSCCGGGCEEEEEEEC--
T ss_pred             CCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCCc--EEEEeecCcccCEEEEEEEEeC
Confidence            48888888889999999999999999999999999999999988777665544433  5899999999999999999999


Q ss_pred             CCceeeEEEEEeecCC
Q psy16863        428 VGRSHCSCELSVLVPK  443 (1075)
Q Consensus       428 ~g~~~~s~~l~V~~~~  443 (1075)
                      .|....++.|.|..++
T Consensus        87 ~g~~~~~~~l~V~~~~  102 (108)
T 3kvq_A           87 LGCAKVEAFFIIEGAQ  102 (108)
T ss_dssp             --CEEEEEEEEEEC--
T ss_pred             CCceEEEEEEEEeCCC
Confidence            9999999999888765

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.34  E-value=2e-12  Score=112.26  Aligned_cols=88  Identities=19%  Similarity=0.339  Sum_probs=76.7

Q ss_pred             CCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEe
Q psy16863        347 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       347 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      +.||.|...+....+.+|+++.|.|.+.|.| +.|.|+|+|..+..+.++.+.  +.  .|.|.+++.+|+|.|+|.|.|
T Consensus         7 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~--~~--~L~i~~~~~~D~G~Y~C~a~n   81 (95)
T 2ckn_A            7 AQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT--GE--EVEVRDSIPADSGLYACVTSS   81 (95)
T ss_dssp             SCSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC--SS--EEEESSCCGGGSEEEEEEEEE
T ss_pred             CCCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe--CC--EEEECCCChHHCEEEEEEecc
Confidence            4678888888899999999999999999987 799999999999877776554  22  589999999999999999999


Q ss_pred             CCCceeeEEEEEe
Q psy16863        427 AVGRSHCSCELSV  439 (1075)
Q Consensus       427 ~~g~~~~s~~l~V  439 (1075)
                      ..|....++.|.|
T Consensus        82 ~~g~~~~~~~l~V   94 (95)
T 2ckn_A           82 PSGSDTTYFSVNV   94 (95)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEE
Confidence            9999887777766

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.34  E-value=3.1e-12  Score=114.85  Aligned_cols=104  Identities=15%  Similarity=0.282  Sum_probs=78.3

Q ss_pred             cccceeecceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCCCcee---ccCcEEEEec--C----CeEEEEE
Q psy16863        135 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPI---FGNRFRAINR--D----GRTELNI  205 (1075)
Q Consensus       135 ~p~~~~~~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~~~~~---~~~~~~~~~~--~----~~~~L~I  205 (1075)
                      .|.|+..++++.|.+|++++|.|.+.+..       +.|.+.+.|+|+.....   .+.++.+...  +    ..+.|+|
T Consensus         7 ~~~F~~~P~~v~V~eG~~v~L~C~v~g~~-------~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I   79 (126)
T 2dav_A            7 GILFIEKPQGGTVKVGEDITFIAKVKAED-------LLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQI   79 (126)
T ss_dssp             SCSCCSCCCCCEEETTCCEEEEEEEECCC-------SSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEE
T ss_pred             ccEEEEcCCCeEEeCCCCEEEEEEEeccC-------CCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEE
Confidence            35688999999999999999999887532       23678999999642221   1345544321  1    2478999


Q ss_pred             ceeccCCCeEEEEEEEcCceeEEEEEEEeeeccCCCCCcc
Q psy16863        206 RRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAF  245 (1075)
Q Consensus       206 ~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~  245 (1075)
                      .+++.+|+|.|+|.|+|..|..+..++|+|....+..|.+
T Consensus        80 ~~v~~~DaG~Y~Cevsn~~g~~~~~~~L~V~~~~~~~p~~  119 (126)
T 2dav_A           80 IKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNI  119 (126)
T ss_dssp             CSCCTTSCEEEEEEEECSSCEEEECCEEEEECCCCSCCCC
T ss_pred             ccCCcccCEEEEEEEEeCCCcEEEEEEEEEEecCCCCCeE
Confidence            9999999999999999999999999999998644444443

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.34  E-value=3.4e-12  Score=112.46  Aligned_cols=89  Identities=21%  Similarity=0.366  Sum_probs=75.5

Q ss_pred             CCCCeEEeccce-eeeecCCeEEEEEEEecCCCCeEEEEECCEEeecC-CcEEEEEeeCcEEEEEEccccCCCCeEEEEE
Q psy16863        746 NKAPKFIEGLKS-CQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVES-DNVKILKETLGVCHLKIHALEVADQAEWKCI  823 (1075)
Q Consensus       746 ~~~p~~~~~~~~-~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~  823 (1075)
                      ..+|.|+..+.+ ..+.+|+++.|.|.+ +.|.+.++|+|+|.+|..+ .++.+... ...+.|.|.+++.+|+|.|+|.
T Consensus        13 ~~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~   90 (104)
T 1pd6_A           13 KKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESI-GAKRTLTISQCSLADDAAYQCV   90 (104)
T ss_dssp             STTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEE-TTEEEEEECSCSSSSCEEEEEE
T ss_pred             cCCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEec-CCEEEEEECCCCcccCEEEEEE
Confidence            368899988877 789999999999999 6899999999999999887 78877644 3477999999999999999999


Q ss_pred             EEeCCceEEEEEEEEEE
Q psy16863        824 ATNDFGQSITSCFLKLN  840 (1075)
Q Consensus       824 A~N~~G~~~~s~~l~V~  840 (1075)
                      |    |....++.|.|.
T Consensus        91 a----~~~~~~~~l~V~  103 (104)
T 1pd6_A           91 V----GGEKCSTELFVK  103 (104)
T ss_dssp             E----TTEEECCEEEEE
T ss_pred             E----CCCcEEEEEEEe
Confidence            9    445566777764

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.34  E-value=9.7e-12  Score=130.97  Aligned_cols=167  Identities=18%  Similarity=0.249  Sum_probs=108.5

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEECC--Ee---c--------------CCCCcEEEEEc--CCEEEEEEcccC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRND--RK---L--------------EENKIYRTQHD--GNFYFIDLSSVS  413 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~g--~~---l--------------~~~~~~~~~~~--g~~~~L~I~~v~  413 (1075)
                      ..+.+.+|++++|.|.+.+.+  ...+.|||..  ..   +              ....|+.+..+  .....|+|.+++
T Consensus        31 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~  110 (256)
T 3sob_H           31 GGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLR  110 (256)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCC
Confidence            456789999999999997632  5689999842  11   1              01245555433  356679999999


Q ss_pred             CCCceeEEEEEEeCCC-----------ceeeEEEEEeecCCCCCCCeee-eecceEEecCCeEEEEEEEEC-CC-CCeEE
Q psy16863        414 LFDSGRWTCLAENAVG-----------RSHCSCELSVLVPKAYKAPFFT-KELEAILTEQGTVSLECKVMG-IP-TPQLI  479 (1075)
Q Consensus       414 ~~d~G~Y~C~a~n~~g-----------~~~~s~~l~V~~~~~~~~p~~~-~~~~~~~~~g~~v~l~C~~~g-~p-~~~v~  479 (1075)
                      .+|+|.|.|.+.+..|           .......|.|...+. .+|.+. ..+...+.+|+.++|.|.+.+ .| ++.+.
T Consensus       111 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~-~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~~v~  189 (256)
T 3sob_H          111 AEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSAST-KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVS  189 (256)
T ss_dssp             GGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCC-BCCEEEEECCC-----TTEEEEEEEEEEEBSSCCEEE
T ss_pred             cccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCC-CCCEEEEECCCcccccCCcEEEEEEEEEEECCCeEEE
Confidence            9999999999987531           112234566654332 334443 333334568999999999987 45 34899


Q ss_pred             EEeCCEeccC-----------CCE----EEEEeCCCCCCCcEEEEEEEEecceeeEEEEEEEE
Q psy16863        480 WYKDNKKIKA-----------GDI----FALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVIA  527 (1075)
Q Consensus       480 W~~~g~~l~~-----------~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~v~v  527 (1075)
                      |  ++..+..           +..    ..|.+......| |.|+|.+.|..+.......+.+
T Consensus       190 W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~  249 (256)
T 3sob_H          190 W--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP  249 (256)
T ss_dssp             E--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             E--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEecc
Confidence            9  5554421           122    257777778888 9999999999876655554443

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.33  E-value=1.5e-11  Score=129.50  Aligned_cols=186  Identities=15%  Similarity=0.182  Sum_probs=113.0

Q ss_pred             cceeeccceeEEEEEecCC----CceEEEEe-cCCCeeeE-EecC-CCc----cccCCCeEEEee--CCeEEEEEcccCC
Q psy16863        251 DIAVKVGTRARLLVEIRSP----TEIKCQFD-LNNTIPFS-FRAQ-GDH----PIFGNRFRAINR--DGRTELNIRRVRR  317 (1075)
Q Consensus       251 ~~~v~~g~~~~l~c~~~~~----~~~~c~~~-~~~~~~~~-w~~~-~~~----~~~~~~~~~~~~--~~~~~L~I~~~~~  317 (1075)
                      ...+.+|+.++|.|...+.    ..+.|... .+....+. .... +..    .....|+.+..+  .+..+|+|.+++.
T Consensus        32 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~  111 (256)
T 3sob_H           32 GGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLRA  111 (256)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             cEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCCc
Confidence            4568899999999998642    22322211 11111211 1111 111    011356766543  3567899999999


Q ss_pred             CCCEEEEEEEEeCC-----------eeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEec-CC-CcEEEEE
Q psy16863        318 DDGGRYSVTASNES-----------GYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS-PT-EIKIHWY  384 (1075)
Q Consensus       318 ~d~G~Y~C~a~n~~-----------g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g-~p-~~~v~W~  384 (1075)
                      +|+|.|.|.+.+..           ........|.|......+|.+........+.+|+.++|.|.+.+ .| ++.+.| 
T Consensus       112 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~~v~W-  190 (256)
T 3sob_H          112 EDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW-  190 (256)
T ss_dssp             GGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCCEEEE-
T ss_pred             ccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCeEEEE-
Confidence            99999999998743           12233456777654556677664444556779999999999977 44 568999 


Q ss_pred             ECCEecCCCCc---EEEEEcCCE---EEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEe
Q psy16863        385 RNDRKLEENKI---YRTQHDGNF---YFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV  439 (1075)
Q Consensus       385 k~g~~l~~~~~---~~~~~~g~~---~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V  439 (1075)
                       +|..+.....   .....++..   ..|.|.....+| |.|+|.+.|..+.......+.+
T Consensus       191 -~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~  249 (256)
T 3sob_H          191 -NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP  249 (256)
T ss_dssp             -GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             -CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEecc
Confidence             6655532211   111122322   368899998899 9999999999877665555544

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=2.9e-12  Score=113.61  Aligned_cols=95  Identities=15%  Similarity=0.337  Sum_probs=76.2

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecC---CCcEEEEEECC-EecCC--CCcEEEEE--cC----CEEEEEEcccCCC
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSP---TEIKIHWYRND-RKLEE--NKIYRTQH--DG----NFYFIDLSSVSLF  415 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~---p~~~v~W~k~g-~~l~~--~~~~~~~~--~g----~~~~L~I~~v~~~  415 (1075)
                      ..+.|+..+.++.+.+|++++|.|.+.|.   |.|.|+|||+. ..+..  ..++.+..  ++    ..+.|+|.+++.+
T Consensus        11 ~~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   90 (118)
T 2edn_A           11 PTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLG   90 (118)
T ss_dssp             CSSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTT
T ss_pred             CcceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChh
Confidence            35678888999999999999999999875   68999999975 22221  23444432  21    1468999999999


Q ss_pred             CceeEEEEEEeCCCceeeEEEEEeecC
Q psy16863        416 DSGRWTCLAENAVGRSHCSCELSVLVP  442 (1075)
Q Consensus       416 d~G~Y~C~a~n~~g~~~~s~~l~V~~~  442 (1075)
                      |+|.|+|+|+|..|..++++.|+|..+
T Consensus        91 D~G~Y~Cevsn~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A           91 DRGYYRLEVKAKDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             TCSCEEEEEECSSCEEEEEECCEEECC
T ss_pred             hCEEEEEEEEEcCCcEEEEEEEEEEcC
Confidence            999999999999999999999999864

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.33  E-value=5.1e-12  Score=109.64  Aligned_cols=88  Identities=22%  Similarity=0.422  Sum_probs=78.6

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      ..|.|...+.+..+.+|+++.|.|.+ +.|.+.+.|||+|..+..+.++.+..++..+.|.|.+++.+|+|.|+|.|   
T Consensus         7 ~~~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a---   82 (95)
T 2k1m_A            7 PVSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA---   82 (95)
T ss_dssp             CCCCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE---
T ss_pred             CCCeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE---
Confidence            35778888889999999999999999 78889999999999998888888888898889999999999999999999   


Q ss_pred             CCceeeEEEEEee
Q psy16863        428 VGRSHCSCELSVL  440 (1075)
Q Consensus       428 ~g~~~~s~~l~V~  440 (1075)
                       |....++.|.|.
T Consensus        83 -g~~~~~~~l~V~   94 (95)
T 2k1m_A           83 -GSSKVKFDLKVI   94 (95)
T ss_dssp             -TTEEEEEEEEEE
T ss_pred             -CCceEEEEEEEe
Confidence             667777777774

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.33  E-value=7.2e-13  Score=135.36  Aligned_cols=176  Identities=12%  Similarity=0.125  Sum_probs=107.9

Q ss_pred             cccccccceeeccceeEEEEEecCCCceEEEEecCCCeeeEEecCCCccccCC-CeEE-EeeC---CeEEEEEcccCCCC
Q psy16863        245 FIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGN-RFRA-INRD---GRTELNIRRVRRDD  319 (1075)
Q Consensus       245 ~~~~~~~~~v~~g~~~~l~c~~~~~~~~~c~~~~~~~~~~~w~~~~~~~~~~~-~~~~-~~~~---~~~~L~I~~~~~~d  319 (1075)
                      ++..+....+.+|+.++|.|.+.+...       ..++.+.|  ++....... .... ...+   ....|+|.+++.+|
T Consensus         7 ~~~~P~~~~v~~G~~v~L~C~~~g~~p-------~~~~~v~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D   77 (214)
T 1ow0_A            7 SLHRPALEDLLLGSEANLTCTLTGLRD-------ASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNH   77 (214)
T ss_dssp             EEECCCHHHHHHCSSCCCEEEETTCCS-------CCCCCCCB--SSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHH
T ss_pred             EEECcChHHhccCCCcEEEEEEeeeEC-------CCCeEEEE--cCCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCC
Confidence            344566777899999999988764310       00145566  222211100 0000 0001   23479999999999


Q ss_pred             CEEEEEEEEeCCeeEEEEEEEEEecCCCCCCeeee-ecCceeeccCCeEEEEEEEecC-C-CcEEEEEECCEecCCCCcE
Q psy16863        320 GGRYSVTASNESGYSTAKFELSVESQVPDAPAFIR-RLHDIAVKVGTRARLLVEIRSP-T-EIKIHWYRNDRKLEENKIY  396 (1075)
Q Consensus       320 ~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~-~~~~~~v~~G~~v~l~C~~~g~-p-~~~v~W~k~g~~l~~~~~~  396 (1075)
                      +|.|+|.|.|..+.......+.+ .....+|.+.. .+....+..|+.++|.|.+.|. | .+.|+|+|||..+......
T Consensus        78 ~g~Y~C~~~~~~~~~~~~~~i~~-~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~  156 (214)
T 1ow0_A           78 GKTFTCTAAYPESKTPLTATLSK-SGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYL  156 (214)
T ss_dssp             TCEEEEEECCSSCSSCEEEEEEC-CSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSE
T ss_pred             CCeEEEEEecCCCCCceeEeecc-CCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCcee
Confidence            99999999997764322333332 12335776643 3334457789999999999884 5 3599999999998755211


Q ss_pred             ----EEE---EcCCEE---EEEEcccCCCCceeEEEEEEeCCCc
Q psy16863        397 ----RTQ---HDGNFY---FIDLSSVSLFDSGRWTCLAENAVGR  430 (1075)
Q Consensus       397 ----~~~---~~g~~~---~L~I~~v~~~d~G~Y~C~a~n~~g~  430 (1075)
                          ...   .+|...   .|.|.....+|.|.|+|.|.|....
T Consensus       157 ~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~  200 (214)
T 1ow0_A          157 TWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  200 (214)
T ss_dssp             ECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCT
T ss_pred             ecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCCC
Confidence                222   344433   3445444445689999999998654

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=3e-12  Score=113.46  Aligned_cols=92  Identities=23%  Similarity=0.387  Sum_probs=79.3

Q ss_pred             CCCeeeeecCc---eeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEE
Q psy16863        348 DAPAFIRRLHD---IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLA  424 (1075)
Q Consensus       348 ~~p~~~~~~~~---~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a  424 (1075)
                      .+|.++..+..   +.+.+|++++|.|.+.+.|.+ +.|||+|..+..+.++.+..++..+.|.|.+++.+|+|.|+|.|
T Consensus         6 ~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   84 (104)
T 2e6p_A            6 SGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRT   84 (104)
T ss_dssp             SSSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEEC
T ss_pred             CCCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEE
Confidence            36666666666   789999999999999998888 99999999998888888888888889999999999999999999


Q ss_pred             EeCCCceeeEEEEEeecCCC
Q psy16863        425 ENAVGRSHCSCELSVLVPKA  444 (1075)
Q Consensus       425 ~n~~g~~~~s~~l~V~~~~~  444 (1075)
                      .|..+    .+.|.|..+|.
T Consensus        85 ~n~~~----~~~l~V~~~P~  100 (104)
T 2e6p_A           85 EGVSA----FFGVTVQDPSG  100 (104)
T ss_dssp             SSCCC----CEEEEEECCCC
T ss_pred             CCceE----EEEEEEcCCCC
Confidence            98744    56788887764

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=2.9e-12  Score=112.35  Aligned_cols=89  Identities=29%  Similarity=0.446  Sum_probs=76.2

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      .+|.|...+.+..+.+|+++.|.|.+.|.|.+.+.|+|+|..+......   .......|.|.++..+|+|.|+|.|.|.
T Consensus        10 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a~N~   86 (99)
T 2yr3_A           10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARST---CEAGVAELHIQDALPEDHGTYTCLAENA   86 (99)
T ss_dssp             EEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCE---EETTEEEEEECSCCTTCCBCEEEEEECS
T ss_pred             cCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceE---eeCCeEEEEECCCChhhCEEEEEEEEEC
Confidence            4788888888999999999999999999999999999999988765432   2344567999999999999999999999


Q ss_pred             CCceeeEEEEEe
Q psy16863        428 VGRSHCSCELSV  439 (1075)
Q Consensus       428 ~g~~~~s~~l~V  439 (1075)
                      .|....++.|.|
T Consensus        87 ~g~~~~~~~l~V   98 (99)
T 2yr3_A           87 LGQVSCSAWVTV   98 (99)
T ss_dssp             SCEEEEECCEEE
T ss_pred             CCeEEEEEEEEE
Confidence            998877776665

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.33  E-value=1e-11  Score=109.43  Aligned_cols=93  Identities=15%  Similarity=0.196  Sum_probs=73.5

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEE--EEcC---CEEEEEEcccCCCCceeEEE
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRT--QHDG---NFYFIDLSSVSLFDSGRWTC  422 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~--~~~g---~~~~L~I~~v~~~d~G~Y~C  422 (1075)
                      .||.+....   ....|+.+.|.|.+.|.|.|.|+|+|||..|..+.++..  ...+   ....|.|.++..+|+|.|+|
T Consensus         3 ~pP~i~~~~---~~~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   79 (103)
T 1wwb_X            3 FAPTITFLE---SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTL   79 (103)
T ss_dssp             CCCCCCCCC---CCCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEE
T ss_pred             CCCEEEecc---CceECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEE
Confidence            366654222   234688999999999999999999999999987765422  2222   12469999999999999999


Q ss_pred             EEEeCCCceeeEEEEEeecCC
Q psy16863        423 LAENAVGRSHCSCELSVLVPK  443 (1075)
Q Consensus       423 ~a~n~~g~~~~s~~l~V~~~~  443 (1075)
                      .|+|..|....++.|.|..+|
T Consensus        80 ~A~N~~G~~~~~~~l~V~~~P  100 (103)
T 1wwb_X           80 IAKNEYGKDEKQISAHFMGWP  100 (103)
T ss_dssp             EEECSSCEEEEEEEECCSCCC
T ss_pred             EEEeCCCcEeEEEEEEECCCC
Confidence            999999999999999887655

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=4.5e-12  Score=115.27  Aligned_cols=95  Identities=18%  Similarity=0.270  Sum_probs=82.5

Q ss_pred             CCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCC-CCcEEEEEcCCEEEEEEcccCCCCceeEEEEEE
Q psy16863        347 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEE-NKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAE  425 (1075)
Q Consensus       347 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~-~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~  425 (1075)
                      ..+|.|...+.+..+.+|+++.|.|.+.|.|.+.|.|+|+|..+.. ..++.+..++   .|.|.+++.+|+|.|+|.|.
T Consensus         6 ~~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~   82 (118)
T 2eo9_A            6 SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG---VLQIRYAKLGDTGRYTCIAS   82 (118)
T ss_dssp             CCSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETT---EEEEESCCGGGCCCEEEEEE
T ss_pred             CCCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCC---EEEEccCCcCCCEEEEEEEE
Confidence            3578888888899999999999999999999999999999998864 4566666555   58999999999999999999


Q ss_pred             eCCCceeeEEEEEeecCCC
Q psy16863        426 NAVGRSHCSCELSVLVPKA  444 (1075)
Q Consensus       426 n~~g~~~~s~~l~V~~~~~  444 (1075)
                      |..|....++.|.|..++.
T Consensus        83 n~~g~~~~~~~l~V~~~~~  101 (118)
T 2eo9_A           83 TPSGEATWSAYIEVQEFGV  101 (118)
T ss_dssp             CSSCEEEEECCEEEECCSC
T ss_pred             cCCCcEEEEEEEEEEeCCC
Confidence            9999988888888887653

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.32  E-value=7.1e-12  Score=139.99  Aligned_cols=170  Identities=11%  Similarity=0.119  Sum_probs=111.7

Q ss_pred             eeccceeEEEEEecCC-CceEEEEecCCCeeeEEecCCCccccCC--CeEEEeeC---CeEEEEEcccCCCCCEEEEEEE
Q psy16863        254 VKVGTRARLLVEIRSP-TEIKCQFDLNNTIPFSFRAQGDHPIFGN--RFRAINRD---GRTELNIRRVRRDDGGRYSVTA  327 (1075)
Q Consensus       254 v~~g~~~~l~c~~~~~-~~~~c~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~---~~~~L~I~~~~~~d~G~Y~C~a  327 (1075)
                      +.+|+.++|.|.+.+. +.       ...+.+.|+++++......  .......+   ....|.|..++.+|+|.|+|.|
T Consensus       180 ~~~g~~v~L~C~~~g~~P~-------p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~  252 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKD-------DPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRV  252 (376)
T ss_pred             eeeCCeeEEEEEEeccccC-------CCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEE
Confidence            6789999998887642 00       1234678888775542211  00000111   2337999999999999999999


Q ss_pred             EeCCeeEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecC-C-CcEEEEEECCEecCCCCcE--EEEEcCC
Q psy16863        328 SNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSP-T-EIKIHWYRNDRKLEENKIY--RTQHDGN  403 (1075)
Q Consensus       328 ~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p-~~~v~W~k~g~~l~~~~~~--~~~~~g~  403 (1075)
                      .|..+.......+.+......+|.+...+......+|+.++|.|.+.|. | .+.|+|+|||.++......  ....+|.
T Consensus       253 ~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt  332 (376)
T 2aty_A          253 NSAAFPAPIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNES  332 (376)
T ss_pred             ecCCCCCceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCC
Confidence            9976643322333222223457877766666666679999999999884 3 5799999999988543222  2234444


Q ss_pred             E---EEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863        404 F---YFIDLSSVSLFDSGRWTCLAENAVGR  430 (1075)
Q Consensus       404 ~---~~L~I~~v~~~d~G~Y~C~a~n~~g~  430 (1075)
                      .   ..|.|.....+|.|.|+|.|.|....
T Consensus       333 y~~~s~L~i~~~~~~~~~~YtC~v~h~~l~  362 (376)
T 2aty_A          333 YFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  362 (376)
T ss_pred             EEEEEEEEEcHHHhCCCCcEEEEEEeCCCC
Confidence            3   35777777777899999999997643

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.32  E-value=2.8e-11  Score=124.59  Aligned_cols=182  Identities=13%  Similarity=0.122  Sum_probs=112.2

Q ss_pred             ccceeeccceeEEEEEecCC----CceEEEEe-cCCCeeeE-EecC-CCc----cccCCCeEEEee--CCeEEEEEcccC
Q psy16863        250 HDIAVKVGTRARLLVEIRSP----TEIKCQFD-LNNTIPFS-FRAQ-GDH----PIFGNRFRAINR--DGRTELNIRRVR  316 (1075)
Q Consensus       250 ~~~~v~~g~~~~l~c~~~~~----~~~~c~~~-~~~~~~~~-w~~~-~~~----~~~~~~~~~~~~--~~~~~L~I~~~~  316 (1075)
                      ..+.+.+|+.++|.|.+.+.    ..+.|.-. .+....+. .... +..    .....|+.+..+  .+..+|+|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (226)
T 3mlr_H            8 GGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQ   87 (226)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCC
T ss_pred             CCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCC
Confidence            34678899999999998642    22332211 11122221 1111 111    011356776543  356789999999


Q ss_pred             CCCCEEEEEEEEeCCe---------eEEEEEEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEec-CC-CcEEEEEE
Q psy16863        317 RDDGGRYSVTASNESG---------YSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS-PT-EIKIHWYR  385 (1075)
Q Consensus       317 ~~d~G~Y~C~a~n~~g---------~~~~~~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g-~p-~~~v~W~k  385 (1075)
                      .+|+|.|.|.+.+..+         .......|.|......+|.+........+.+|+.++|.|.+.+ .| .+.+.|  
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W--  165 (226)
T 3mlr_H           88 ASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--  165 (226)
T ss_dssp             GGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEEE--
T ss_pred             cccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEEE--
Confidence            9999999999987421         1112346777654555677664444455678999999999977 44 578999  


Q ss_pred             CCEecCCCC---cEEEEEcCCE---EEEEEcccCCCCceeEEEEEEeCCCceeeE
Q psy16863        386 NDRKLEENK---IYRTQHDGNF---YFIDLSSVSLFDSGRWTCLAENAVGRSHCS  434 (1075)
Q Consensus       386 ~g~~l~~~~---~~~~~~~g~~---~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s  434 (1075)
                      ++..+..+.   ......+|..   ..|.|.....+| |.|+|.|.|..+.....
T Consensus       166 ~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~  219 (226)
T 3mlr_H          166 NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD  219 (226)
T ss_dssp             GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEE
T ss_pred             CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCeE
Confidence            554432211   0111122322   368899988889 99999999987765433

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.31  E-value=5.3e-12  Score=111.58  Aligned_cols=92  Identities=23%  Similarity=0.379  Sum_probs=82.8

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      .+|.|...+.+..+.+|++++|.|.+.+.|.+ +.|+|++..+..+.++.+..++..+.|.|.+++.+|+|.|+|.    
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----   81 (103)
T 2e7b_A            7 GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS----   81 (103)
T ss_dssp             CCCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEE----
T ss_pred             CCCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEE----
Confidence            57888888899999999999999999998888 9999999999888899999999999999999999999999998    


Q ss_pred             CCceeeEEEEEeecCCC
Q psy16863        428 VGRSHCSCELSVLVPKA  444 (1075)
Q Consensus       428 ~g~~~~s~~l~V~~~~~  444 (1075)
                      .|....++.|.|..+|.
T Consensus        82 ~g~~~~~~~l~V~~~p~   98 (103)
T 2e7b_A           82 FGDQTTSATLTVTALPS   98 (103)
T ss_dssp             CSSCBCCBCEEEECCCC
T ss_pred             ECCcEEEEEEEEEeccc
Confidence            47777788888887653

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.31  E-value=2e-12  Score=117.55  Aligned_cols=97  Identities=16%  Similarity=0.388  Sum_probs=72.6

Q ss_pred             CCCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCC---c-EEEEEeeCcEEEEEE--ccccCCCCeE
Q psy16863        746 NKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESD---N-VKILKETLGVCHLKI--HALEVADQAE  819 (1075)
Q Consensus       746 ~~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~---~-~~~~~~~~~~~~L~I--~~~~~~D~G~  819 (1075)
                      ..||.|...+.+..+..|+++.|.|.+.|.|.|.|+|+|+|.++....   + ......+.....|.|  .+++.+|+|.
T Consensus         7 ~~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~   86 (117)
T 2v9t_A            7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV   86 (117)
T ss_dssp             CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEE
T ss_pred             cCCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEE
Confidence            368899988888999999999999999999999999999999987542   1 112222222223333  3678999999


Q ss_pred             EEEEEEeCCceEEE-EEEEEEEec
Q psy16863        820 WKCIATNDFGQSIT-SCFLKLNVP  842 (1075)
Q Consensus       820 Y~C~A~N~~G~~~~-s~~l~V~~~  842 (1075)
                      |+|.|.|.+|.+.+ .+.|.|..+
T Consensus        87 Y~C~a~N~~G~~~s~~~~l~~~~~  110 (117)
T 2v9t_A           87 YVCVARNYLGEAVSHDASLEVAAA  110 (117)
T ss_dssp             EEEEEEETTEEEECCCEEEEEC--
T ss_pred             EEEEEEeCccceEeeeEEEEhhhh
Confidence            99999999999866 456666543

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.31  E-value=7.3e-12  Score=107.67  Aligned_cols=82  Identities=12%  Similarity=0.186  Sum_probs=69.3

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeC
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND  827 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~  827 (1075)
                      ++.|...+....+.+|+.+.|.|.+.|.|.|.+.|+|+|.++....+          ..|.|.+++.+|+|.|+|.|.|.
T Consensus         3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~----------~~L~i~~v~~~d~G~Y~C~a~n~   72 (91)
T 3bfo_A            3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK----------KLYMVPYVDLEHQGTYWCHVYND   72 (91)
T ss_dssp             CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCCS----------SEEEESSCCGGGCEEEEEEEECS
T ss_pred             ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCC----------CeEEECCCCHHhCEEEEEEEEcC
Confidence            56777777788899999999999999999999999999998865432          27999999999999999999999


Q ss_pred             CceEE-EEEEEEE
Q psy16863        828 FGQSI-TSCFLKL  839 (1075)
Q Consensus       828 ~G~~~-~s~~l~V  839 (1075)
                      .|... ..+.|.|
T Consensus        73 ~g~~~s~~~~l~V   85 (91)
T 3bfo_A           73 RDSQDSKKVEIII   85 (91)
T ss_dssp             SCEEECCCEEEEE
T ss_pred             CCCEEeeeEEEEE
Confidence            99754 2345554

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.30  E-value=7.5e-12  Score=110.26  Aligned_cols=89  Identities=27%  Similarity=0.510  Sum_probs=76.7

Q ss_pred             CCCCeeeeecCc-eeeccCCeEEEEEEEecCCCcEEEEEECCEecCCC-CcEEEEEcCCEEEEEEcccCCCCceeEEEEE
Q psy16863        347 PDAPAFIRRLHD-IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN-KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLA  424 (1075)
Q Consensus       347 ~~~p~~~~~~~~-~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a  424 (1075)
                      ..+|.|+..+.+ ..+.+|++++|.|.+ +.|.+.|+|+|||..+..+ .++.+..++..+.|.|.+++.+|+|.|+|.|
T Consensus        13 ~~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   91 (104)
T 1pd6_A           13 KKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV   91 (104)
T ss_dssp             STTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEE
T ss_pred             cCCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEEE
Confidence            357888888877 889999999999999 7888899999999999887 7888888888889999999999999999999


Q ss_pred             EeCCCceeeEEEEEee
Q psy16863        425 ENAVGRSHCSCELSVL  440 (1075)
Q Consensus       425 ~n~~g~~~~s~~l~V~  440 (1075)
                          |....++.|.|.
T Consensus        92 ----~~~~~~~~l~V~  103 (104)
T 1pd6_A           92 ----GGEKCSTELFVK  103 (104)
T ss_dssp             ----TTEEECCEEEEE
T ss_pred             ----CCCcEEEEEEEe
Confidence                445556666664

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.30  E-value=1.4e-11  Score=109.80  Aligned_cols=93  Identities=13%  Similarity=0.215  Sum_probs=74.2

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCC---cEEEEEECCEec-C--CCCcEEEEE--c----CCEEEEEEcccCCC
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTE---IKIHWYRNDRKL-E--ENKIYRTQH--D----GNFYFIDLSSVSLF  415 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~---~~v~W~k~g~~l-~--~~~~~~~~~--~----g~~~~L~I~~v~~~  415 (1075)
                      ..|.|+..+.++.+.+|++++|.|.+.|.|.   +.|+|||++... .  ...++.+..  .    .....|.|.+++.+
T Consensus         3 p~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   82 (108)
T 3cx2_A            3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA   82 (108)
T ss_dssp             CCCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGG
T ss_pred             CccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCc
Confidence            4678888889999999999999999999887   999999988322 1  123444331  1    12457999999999


Q ss_pred             CceeEEEEEEeCCCceeeEEEEEee
Q psy16863        416 DSGRWTCLAENAVGRSHCSCELSVL  440 (1075)
Q Consensus       416 d~G~Y~C~a~n~~g~~~~s~~l~V~  440 (1075)
                      |+|.|+|.|.|..|...+++.|.|.
T Consensus        83 D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           83 FTGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             cCEEEEEEEecCCCceEEEEEEEEe
Confidence            9999999999999999988888875

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=7.7e-13  Score=119.62  Aligned_cols=100  Identities=23%  Similarity=0.352  Sum_probs=84.6

Q ss_pred             EEEEEecCCCCCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEE-EcCCEEEEEEcccCCCC
Q psy16863        338 FELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQ-HDGNFYFIDLSSVSLFD  416 (1075)
Q Consensus       338 ~~l~V~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~-~~g~~~~L~I~~v~~~d  416 (1075)
                      +.|.|..   .++.|...+.+..+.+|++++|.|.+.+.|.+.++|||||..+..+.++.+. .++..+.|.|.++..+|
T Consensus         5 a~l~V~~---~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D   81 (115)
T 2cr6_A            5 SSGLVQG---RRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKD   81 (115)
T ss_dssp             CCCCCCS---SCCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTT
T ss_pred             EEEEEcC---CCCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhh
Confidence            4455653   3568888889999999999999999999999999999999999888777665 44666789999999999


Q ss_pred             ceeEEEEEEeCCCceeeEEEEEeecCCC
Q psy16863        417 SGRWTCLAENAVGRSHCSCELSVLVPKA  444 (1075)
Q Consensus       417 ~G~Y~C~a~n~~g~~~~s~~l~V~~~~~  444 (1075)
                      +|.|+|.+    |....++.|.|..+|.
T Consensus        82 ~G~Y~C~~----g~~~~~~~L~V~~~p~  105 (115)
T 2cr6_A           82 SGTIYFEA----GDQRASAALRVTEKPS  105 (115)
T ss_dssp             CEEEEEEE----TTEECCEEEEEECCSS
T ss_pred             CEEEEEEE----CCeeEEEEEEEECCCc
Confidence            99999994    7778889999987664

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.29  E-value=3.8e-12  Score=112.53  Aligned_cols=91  Identities=21%  Similarity=0.340  Sum_probs=80.0

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .||.|...+.+..+.+|+++.|.|.+.+.|.| ++|+|++..+..+.++.+... ...+.|.|.+++.+|+|.|+|.   
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~---   81 (103)
T 2e7b_A            7 GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQE-GAMLELVVRNLRPQDSGRYSCS---   81 (103)
T ss_dssp             CCCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEEC-SSEEEEEECSCCTTTCCCEEEE---
T ss_pred             CCCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEEc-CCEEEEEEccCCcccCEEEEEE---
Confidence            58888888889999999999999999999999 999999999988888888654 4577899999999999999998   


Q ss_pred             CCceEEEEEEEEEEecC
Q psy16863        827 DFGQSITSCFLKLNVPK  843 (1075)
Q Consensus       827 ~~G~~~~s~~l~V~~~~  843 (1075)
                       +|....++.|.|..++
T Consensus        82 -~g~~~~~~~l~V~~~p   97 (103)
T 2e7b_A           82 -FGDQTTSATLTVTALP   97 (103)
T ss_dssp             -CSSCBCCBCEEEECCC
T ss_pred             -ECCcEEEEEEEEEecc
Confidence             5667778888888754

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=3.1e-12  Score=112.01  Aligned_cols=82  Identities=16%  Similarity=0.299  Sum_probs=69.7

Q ss_pred             ccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEE
Q psy16863        754 GLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT  833 (1075)
Q Consensus       754 ~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~  833 (1075)
                      .+....+.+|+.+.|.|.+.|.| |.|+|+|+|..+....++.+.   .  ..|.|.+++.+|+|.|+|.|.|..|....
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~---~--~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~   82 (99)
T 2cr3_A            9 EVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRIT---G--EEVEVQDSVPADSGLYACVTSSPSGSDTT   82 (99)
T ss_dssp             CEEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEEC---S--SEEEETTCCTTTCEEEEEEEEETTEEEEE
T ss_pred             CCcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEE---C--CEEEEccCCHHHCEEEEEEEEeCCceEEE
Confidence            34566788999999999999987 799999999999877776654   2  27999999999999999999999999877


Q ss_pred             EEEEEEEe
Q psy16863        834 SCFLKLNV  841 (1075)
Q Consensus       834 s~~l~V~~  841 (1075)
                      ++.|.|..
T Consensus        83 ~~~l~V~~   90 (99)
T 2cr3_A           83 YFSVNVSD   90 (99)
T ss_dssp             EEEECBCS
T ss_pred             EEEEEEec
Confidence            77776654

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=1.1e-11  Score=109.47  Aligned_cols=91  Identities=24%  Similarity=0.272  Sum_probs=80.1

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .||.|...+.+..+.+|+++.|.|.+ +.|.|.++|+|++..+..+.++.+.. ....+.|.|.+++.+|+|.|+|.   
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~---   81 (103)
T 2dku_A            7 GANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQ-EGLTLRLTISALEKADSDTYTCD---   81 (103)
T ss_dssp             CCCCCSSCCCCEEEETTSEEEEEEEC-SSCCSCCEEEESSCBCCSSSSEEEEE-ETTEEEEEEESCCTTTCSEEEEE---
T ss_pred             CCCEeEecCCcEEEeCCCcEEEEEEe-CCCCCeEEEEeCCEECCCCCeEEEEe-CCCEEEEEECCCCcccCEEEEEE---
Confidence            58889888999999999999999995 78999999999999999888888763 44577899999999999999998   


Q ss_pred             CCceEEEEEEEEEEecC
Q psy16863        827 DFGQSITSCFLKLNVPK  843 (1075)
Q Consensus       827 ~~G~~~~s~~l~V~~~~  843 (1075)
                       .|....++.|.|..++
T Consensus        82 -~g~~~~~~~l~V~~~p   97 (103)
T 2dku_A           82 -IGQAQSRAQLLVQGRR   97 (103)
T ss_dssp             -CSSCBCCEEEEEECSC
T ss_pred             -eCCceEEEEEEEeCcc
Confidence             5777778889988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1075
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	2e-15
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	2e-13
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	4e-12
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-11
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	4e-11
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	4e-11
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	5e-11
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	3e-10
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	2e-06
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	9e-04
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	8e-15
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-12
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-12
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	7e-12
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	2e-11
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	2e-09
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-06
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-06
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-05
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	2e-04
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	9e-14
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-13
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	5e-12
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-10
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	7e-10
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-09
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	5e-09
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	5e-09
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	3e-13
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	4e-10
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	4e-10
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	5e-10
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	5e-10
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	6e-10
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	2e-08
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	4e-08
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	2e-04
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	5e-13
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	7e-11
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	7e-11
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	1e-10
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	3e-10
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	9e-10
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	3e-08
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	1e-07
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	8e-05
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	1e-11
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	5e-11
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	8e-11
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	1e-10
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	1e-09
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	4e-08
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	9e-08
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	9e-08
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	2e-04
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	4e-04
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	2e-11
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	1e-10
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	2e-10
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	6e-10
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	9e-09
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	2e-08
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	2e-08
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	1e-07
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	7e-04
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-11
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	6e-09
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	5e-08
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-07
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	7e-07
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	7e-07
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-06
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-06
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	0.001
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	6e-11
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	8e-10
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	2e-08
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	7e-08
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	1e-05
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	2e-05
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	1e-10
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	2e-07
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	2e-07
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	1e-06
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	1e-06
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	4e-06
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	2e-05
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	4e-10
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	4e-07
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	6e-06
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	2e-05
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	2e-05
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	2e-04
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	4e-10
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	4e-10
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	4e-07
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	4e-07
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	1e-06
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	5e-06
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	3e-04
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	3e-04
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	5e-10
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	4e-08
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	3e-06
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	6e-04
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	0.001
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	0.002
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	5e-10
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	2e-09
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	2e-07
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	9e-07
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	9e-07
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	4e-05
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	7e-04
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	0.002
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	3e-09
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	6e-09
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	4e-08
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	4e-07
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	2e-06
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	2e-06
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	3e-06
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	6e-05
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	4e-09
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	4e-09
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	2e-07
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	2e-06
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	1e-05
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	1e-05
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	5e-09
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	2e-06
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	7e-06
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	3e-05
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	2e-04
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	5e-09
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	6e-08
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	3e-06
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	3e-06
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	1e-05
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	8e-05
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	2e-04
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	2e-04
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	6e-09
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-08
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-07
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-07
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	5e-07
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	7e-07
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	5e-06
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	5e-06
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	0.001
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	7e-09
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	8e-07
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	8e-06
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-05
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-05
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-05
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-05
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	9e-04
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	2e-08
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	4e-08
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	6e-08
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	8e-08
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	1e-07
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	2e-07
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	2e-07
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	3e-07
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	4e-04
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	3e-08
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	3e-08
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	5e-07
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	7e-07
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-05
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	7e-05
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-04
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	5e-04
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	4e-08
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	6e-08
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	2e-07
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	2e-06
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	1e-05
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	7e-05
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	7e-05
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	5e-04
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	5e-08
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	6e-08
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	8e-08
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	3e-07
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	6e-06
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	3e-05
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	8e-05
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	8e-05
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	4e-04
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	5e-08
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	5e-06
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	8e-05
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	3e-04
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	0.004
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	0.004
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	7e-08
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	1e-05
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	6e-05
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	0.001
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	0.001
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	0.003
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	0.004
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	8e-08
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	1e-07
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	4e-06
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	8e-08
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	4e-07
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	8e-07
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	2e-04
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	9e-08
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	1e-07
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	1e-06
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	1e-05
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	1e-05
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	2e-05
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	2e-05
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	6e-05
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	1e-07
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	3e-07
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	2e-06
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	1e-04
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	3e-07
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	4e-07
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	3e-06
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	5e-06
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	2e-05
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	2e-05
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	4e-05
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	0.004
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	5e-07
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	2e-06
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	4e-06
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	2e-05
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	2e-05
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	3e-05
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	5e-05
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	9e-05
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	7e-07
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	1e-06
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	2e-06
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	1e-04
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	0.002
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	2e-06
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	3e-06
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	1e-05
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	1e-05
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	1e-05
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	4e-05
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	4e-05
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	6e-05
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	3e-06
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	3e-05
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	2e-04
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	5e-04
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	5e-06
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	5e-06
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	5e-06
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	2e-05
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	2e-04
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	0.001
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	6e-06
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	2e-04
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	0.002
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	0.002
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	0.003
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	6e-06
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	2e-05
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	2e-05
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	9e-06
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	1e-05
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	2e-04
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	3e-04
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	3e-04
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	1e-05
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	1e-05
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	8e-04
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	0.001
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	2e-05
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	2e-05
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	3e-05
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	3e-05
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	0.001
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	0.002
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	3e-05
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	6e-05
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	0.002
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	0.004
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	6e-05
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	1e-04
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	7e-04
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	9e-05
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	2e-04
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	0.001
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	0.003
d1fnla2	89	b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C	0.001
d1fnla2	89	b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C	0.002
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	0.002
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	0.002
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	0.004
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	0.002
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	0.003
d1dr9a1	105	b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (	0.004
d1l6za2	96	b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,	0.004

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (172), Expect = 2e-15
 Identities = 18/93 (19%), Positives = 39/93 (41%)

Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL 409
           P  I+   D  V+ G    L  ++     I   W +  ++++E++  + ++  N   + +
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60

Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
            +      G +T L EN +G       L+V+  
Sbjct: 61  LAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 93

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (157), Expect = 2e-13
 Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 1/94 (1%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLK 808
           P+ I+  +  +    E  +   +V+ +     +W +  +Q+ ES+++K+     G   L 
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENG-SKLT 59

Query: 809 IHALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
           I A        +  +  N  G       L +   
Sbjct: 60  ILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 93

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (148), Expect = 4e-12
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 10/88 (11%)

Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL- 905
           P+ ++  +   +  G +V L  KV G    T  W K  ++++  +  K+ + E+G+    
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60

Query: 906 --------GIYTCEAHNCMGTTSSSAAL 925
                   G YT    N +G+  +   L
Sbjct: 61  LAARQEHCGCYTLLVENKLGSRQAQVNL 88

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (144), Expect = 1e-11
 Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 14/92 (15%)

Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL----- 705
           P+ ++  +      G  V    KV G    T  W K  ++++  +  ++  + +      
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60

Query: 706 --------GSYCCVAKNVMGKAESSTQLTIED 729
                   G Y  + +N +G  ++   LT+ D
Sbjct: 61  LAARQEHCGCYTLLVENKLGSRQAQVNLTVVD 92

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 4e-11
 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 13/111 (11%)

Query: 136 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAI 195
           P  I+   D  V+ G    L  ++     I C +            +    I  +    +
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWM-----------KFRKQIQESEHMKV 49

Query: 196 NRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAF 245
                  +L I   R++  G Y++   N+ G   A+  L+V    PD PA 
Sbjct: 50  ENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV-DKPDPPAG 99

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 4e-11
 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 13/111 (11%)

Query: 243 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAI 302
           P  I+   D  V+ G    L  ++     I C +            +    I  +    +
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWM-----------KFRKQIQESEHMKV 49

Query: 303 NRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAF 352
                  +L I   R++  G Y++   N+ G   A+  L+V    PD PA 
Sbjct: 50  ENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV-DKPDPPAG 99

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 5e-11
 Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 3/96 (3%)

Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSI 610
           P  I+  E+ K + G S  L  +V       +  W      ++ S+   +      G  +
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPI-TCTWMKFRKQIQESEHMKVENSE-NGSKL 58

Query: 611 EINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMP 646
            I        G +  +  +  G +Q     + V+  
Sbjct: 59  TILAARQEHCGCYTLLVENKLGSRQAQ-VNLTVVDK 93

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 3e-10
 Identities = 19/89 (21%), Positives = 28/89 (31%), Gaps = 10/89 (11%)

Query: 448 PFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIF---------ALTA 497
           P   +  E      G +V L  KV G       W K  K+I+  +            LT 
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60

Query: 498 NPKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
                   G YT    N +G+  +   + 
Sbjct: 61  LAARQEHCGCYTLLVENKLGSRQAQVNLT 89

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 2e-06
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 75  QGDHPIFGNRFRAINRDGRT-ELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP 133
           +    I  +    +       +L I   R++  G Y++   N+ G   A+  L+V    P
Sbjct: 36  KFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV-DKP 94

Query: 134 DAPAF 138
           D PA 
Sbjct: 95  DPPAG 99

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 9e-04
 Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 9/64 (14%)

Query: 2  GIPTPQLIWYKDNKKIKAGDIF---------ALTANPKDPSSLGTYTCEAVNCMGAAFST 52
          G       W K  K+I+  +            LT         G YT    N +G+  + 
Sbjct: 26 GTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQ 85

Query: 53 SRVI 56
            + 
Sbjct: 86 VNLT 89

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 69.1 bits (168), Expect = 8e-15
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 10/92 (10%)

Query: 844 HYKKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTC 903
           ++   + +E+    +     V   C   G P PT++W K+G+E K           +   
Sbjct: 3   YWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHW 62

Query: 904 CL----------GIYTCEAHNCMGTTSSSAAL 925
            L          G YTC   N  G+ + +  L
Sbjct: 63  SLIMESVVPSDKGNYTCVVENEYGSINHTYHL 94

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 62.5 bits (151), Expect = 1e-12
 Identities = 15/95 (15%), Positives = 35/95 (36%), Gaps = 4/95 (4%)

Query: 748 APKFIEGLKSCQ----ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLG 803
           AP +    K  +           KF      +P P + W ++ ++  +   +   K    
Sbjct: 1   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 60

Query: 804 VCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
              L + ++  +D+  + C+  N++G    +  L 
Sbjct: 61  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 95

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 62.5 bits (151), Expect = 1e-12
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 5/97 (5%)

Query: 349 APAFIRRLH----DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLE-ENKIYRTQHDGN 403
           AP +           AV      +            + W +N ++ + E++I   +    
Sbjct: 1   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 60

Query: 404 FYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
            + + + SV   D G +TC+ EN  G  + +  L V+
Sbjct: 61  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 97

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 60.6 bits (146), Expect = 7e-12
 Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 15/95 (15%)

Query: 447 APFFTKELEAILTEQ-----GTVSLECKVMGIPTPQLIWYKDNKKIKA----------GD 491
           AP++T   +            TV   C   G P P + W K+ K+ K             
Sbjct: 1   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 60

Query: 492 IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
            ++L      PS  G YTC   N  G+   T  + 
Sbjct: 61  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 95

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 59.4 bits (143), Expect = 2e-11
 Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 19/95 (20%)

Query: 652 PRFVESLKA-----VMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGD----VYQLTGT 702
           P +  + K       +     V F C   G P PT++W K+ +E K              
Sbjct: 2   PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 61

Query: 703 SSL----------GSYCCVAKNVMGKAESSTQLTI 727
            SL          G+Y CV +N  G    +  L +
Sbjct: 62  WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 2e-09
 Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 6/99 (6%)

Query: 550 APIFIK----EVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGL 605
           AP +      E          +    C     P P ++ W       +   +        
Sbjct: 1   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRN 59

Query: 606 GGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL 644
             +S+ +  +   D G + CV  +  G    +  ++ V+
Sbjct: 60  QHWSLIMESVVPSDKGNYTCVVENEYGSINHT-YHLDVV 97

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 1e-06
 Identities = 15/105 (14%), Positives = 25/105 (23%), Gaps = 13/105 (12%)

Query: 135 APAFIRRLH----DIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGN 190
           AP +           AV      +             ++          +   +      
Sbjct: 1   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRW---------LKNGKEFKQEHR 51

Query: 191 RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
                 R+    L +  V   D G Y+    NE G     + L V
Sbjct: 52  IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 1e-06
 Identities = 15/105 (14%), Positives = 25/105 (23%), Gaps = 13/105 (12%)

Query: 242 APAFIRRLH----DIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGN 297
           AP +           AV      +             ++          +   +      
Sbjct: 1   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRW---------LKNGKEFKQEHR 51

Query: 298 RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
                 R+    L +  V   D G Y+    NE G     + L V
Sbjct: 52  IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 10/65 (15%)

Query: 2  GIPTPQLIWYKDNKKIKA----------GDIFALTANPKDPSSLGTYTCEAVNCMGAAFS 51
          G P P + W K+ K+ K              ++L      PS  G YTC   N  G+   
Sbjct: 31 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 90

Query: 52 TSRVI 56
          T  + 
Sbjct: 91 TYHLD 95

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 11/56 (19%), Positives = 17/56 (30%)

Query: 73  RAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
           +   +            R+    L +  V   D G Y+    NE G     + L V
Sbjct: 41  KNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 66.0 bits (160), Expect = 9e-14
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 1/92 (1%)

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN-KIYRTQHDGNFYFI 407
           AP    R+    V  G+ A   V +    + +  WY+N  K+E + +IY    + N   +
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 63

Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
            +  V+  DS      A N  G +     L V
Sbjct: 64  VIRDVTGEDSASIMVKAINIAGETSSHAFLLV 95

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 64.5 bits (156), Expect = 3e-13
 Identities = 24/92 (26%), Positives = 41/92 (44%)

Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH 806
           +APK  E ++S       +  F V+V   P+P+  W+++  ++  SD +        VC 
Sbjct: 3   EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 62

Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
           L I  +   D A     A N  G++ +  FL 
Sbjct: 63  LVIRDVTGEDSASIMVKAINIAGETSSHAFLL 94

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 5e-12
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 846 KKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC 904
           + PK  E +++  + +G   +   +V+G P P  +W+K+G +++  D       ED  C 
Sbjct: 3   EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 62

Query: 905 L----------GIYTCEAHNCMGTTSSSAAL 925
           L               +A N  G TSS A L
Sbjct: 63  LVIRDVTGEDSASIMVKAINIAGETSSHAFL 93

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 3e-10
 Identities = 15/94 (15%), Positives = 34/94 (36%), Gaps = 2/94 (2%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
           AP   + +++     G+ A    +V+  P P   ++ N   +  +   Y    +      
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 63

Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
           +  + +   D       A + +G    S A++ V
Sbjct: 64  VIRD-VTGEDSASIMVKAINIAGETS-SHAFLLV 95

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 54.9 bits (131), Expect = 7e-10
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 15/93 (16%)

Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL---- 705
            P+  E +++     G    F  +VVG P P  +W+K+  +++  D              
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 63

Query: 706 ----------GSYCCVAKNVMGKAESSTQLTIE 728
                      S    A N+ G+  S   L ++
Sbjct: 64  VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQ 96

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 3e-09
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 11/97 (11%)

Query: 444 AYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD- 501
           + +AP   + +++    QG       +V+G P P+  WYK+  KI+  D         + 
Sbjct: 1   SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 60

Query: 502 ---------PSSLGTYTCEAVNCMGAAFSTSRVIARG 529
                         +   +A+N  G   S + ++ + 
Sbjct: 61  CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 97

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 5e-09
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 9/103 (8%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRA 194
           AP    R+    V  G+ A   V +    + +C++  N                   +  
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGV---------KIERSDRIYWY 54

Query: 195 INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 237
              D   EL IR V  +D     V A N +G +++   L V++
Sbjct: 55  WPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 97

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 5e-09
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 9/103 (8%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRA 301
           AP    R+    V  G+ A   V +    + +C++  N                   +  
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGV---------KIERSDRIYWY 54

Query: 302 INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
              D   EL IR V  +D     V A N +G +++   L V++
Sbjct: 55  WPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 97

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 64.5 bits (156), Expect = 3e-13
 Identities = 23/93 (24%), Positives = 46/93 (49%)

Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL 409
           P FI + +   V  G  A     + + +   + W+++DR+L+++  Y  +++GN Y + +
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 61

Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
           + V   D G +T  A+N+ G       L+V   
Sbjct: 62  NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRH 94

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.7 bits (133), Expect = 4e-10
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 1/90 (1%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLK 808
           P+FI      +    +   F  +V  S  P V+W +DD+++ +S              L 
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNG-NDYGLT 60

Query: 809 IHALEVADQAEWKCIATNDFGQSITSCFLK 838
           I+ ++  D+ E+   A N +G      FL 
Sbjct: 61  INRVKGDDKGEYTVRAKNSYGTKEEIVFLN 90

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.7 bits (133), Expect = 4e-10
 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 10/89 (11%)

Query: 847 KPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL 905
           +P+F+ +     + EG + N  C+VI    P + W KD RELK    +      +     
Sbjct: 1   QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 60

Query: 906 ---------GIYTCEAHNCMGTTSSSAAL 925
                    G YT  A N  GT      L
Sbjct: 61  INRVKGDDKGEYTVRAKNSYGTKEEIVFL 89

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.3 bits (132), Expect = 5e-10
 Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 10/105 (9%)

Query: 136 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAI 195
           P FI + +   V  G  A             C+   ++    ++           ++   
Sbjct: 2   PRFIVKPYGTEVGEGQSANF----------YCRVIASSPPVVTWHKDDRELKQSVKYMKR 51

Query: 196 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP 240
                  L I RV+ DD G Y+V A N  G       L+V     
Sbjct: 52  YNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSE 96

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.3 bits (132), Expect = 5e-10
 Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 10/105 (9%)

Query: 243 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAI 302
           P FI + +   V  G  A             C+   ++    ++           ++   
Sbjct: 2   PRFIVKPYGTEVGEGQSANF----------YCRVIASSPPVVTWHKDDRELKQSVKYMKR 51

Query: 303 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP 347
                  L I RV+ DD G Y+V A N  G       L+V     
Sbjct: 52  YNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSE 96

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.9 bits (131), Expect = 6e-10
 Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 14/93 (15%)

Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDN---------EELKPGDVYQLT 700
           +PRF+         +G   +F C+V+    P + W KD+          +   G+ Y LT
Sbjct: 1   QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 60

Query: 701 GTSSL----GSYCCVAKNVMGKAESSTQLTIED 729
                    G Y   AKN  G  E    L +  
Sbjct: 61  INRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTR 93

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.7 bits (120), Expect = 2e-08
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 3/93 (3%)

Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSI 610
           P FI +    +   G SA   C+V+    P  + W+  +  ++ S KY    +G   Y +
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPP-VVTWHKDDRELKQSVKYMKRYNG-NDYGL 59

Query: 611 EINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
            IN ++  D GE+   A +S G K+    +++V
Sbjct: 60  TINRVKGDDKGEYTVRAKNSYGTKE-EIVFLNV 91

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.9 bits (118), Expect = 4e-08
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 10/89 (11%)

Query: 448 PFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDN---------KKIKAGDIFALTA 497
           P F  +       +G + +  C+V+    P + W+KD+          K   G+ + LT 
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 61

Query: 498 NPKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
           N       G YT  A N  G       + 
Sbjct: 62  NRVKGDDKGEYTVRAKNSYGTKEEIVFLN 90

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 14/56 (25%), Positives = 19/56 (33%)

Query: 78  HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVP 133
                 ++          L I RV+ DD G Y+V A N  G       L+V     
Sbjct: 41  ELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSE 96

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 64.1 bits (155), Expect = 5e-13
 Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 1/98 (1%)

Query: 343 ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRK-LEENKIYRTQHD 401
           E +    P F + + D+ V  G+ AR   ++    + ++ W+++D    E         +
Sbjct: 2   EEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDE 61

Query: 402 GNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
                + +S V   D  ++TC A N++G + C+ EL V
Sbjct: 62  EGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 99

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 58.0 bits (139), Expect = 7e-11
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 9/109 (8%)

Query: 129 ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF 188
           E +    P F + + D+ V  G+ AR   ++    + +  +         F+        
Sbjct: 2   EEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMW---------FKDDNPVKES 52

Query: 189 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 237
            +     + +G   L I  V  DD  +Y+  A N  G +T   EL VE+
Sbjct: 53  RHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 101

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 58.0 bits (139), Expect = 7e-11
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 9/109 (8%)

Query: 236 ESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF 295
           E +    P F + + D+ V  G+ AR   ++    + +  +         F+        
Sbjct: 2   EEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMW---------FKDDNPVKES 52

Query: 296 GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
            +     + +G   L I  V  DD  +Y+  A N  G +T   EL VE+
Sbjct: 53  RHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 101

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 57.2 bits (137), Expect = 1e-10
 Identities = 26/91 (28%), Positives = 43/91 (47%)

Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
            P F + +   +       +F  +V   P+P+V WF+DD  V ES + +I  +  G C L
Sbjct: 8   KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 67

Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLK 838
            I  +   D A++ C A N  G++  +  L 
Sbjct: 68  TISEVCGDDDAKYTCKAVNSLGEATCTAELL 98

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 56.1 bits (134), Expect = 3e-10
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 11/94 (11%)

Query: 843 KHYKKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDG 901
           K + KP F + +  + + EG A   +CKV G P P + WFKD   +K     +I   E+G
Sbjct: 4   KPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG 63

Query: 902 TCCL----------GIYTCEAHNCMGTTSSSAAL 925
            C L            YTC+A N +G  + +A L
Sbjct: 64  NCSLTISEVCGDDDAKYTCKAVNSLGEATCTAEL 97

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 54.9 bits (131), Expect = 9e-10
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 2/98 (2%)

Query: 546 PPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGL 605
            P   P F K + +++   G++A  +C+V        + W+  +  V+ S  + I  D  
Sbjct: 4   KPHVKPYFTKTILDMEVVEGSAARFDCKV-EGYPDPEVMWFKDDNPVKESRHFQIDYDEE 62

Query: 606 GGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
           G  S+ I+ +   DD ++ C A +S G      A + V
Sbjct: 63  GNCSLTISEVCGDDDAKYTCKAVNSLGEAT-CTAELLV 99

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 50.3 bits (119), Expect = 3e-08
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 15/93 (16%)

Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL---- 705
           KP F +++  +   +G    F+CKV G+P P + WFKD+  +K    +Q+          
Sbjct: 8   KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 67

Query: 706 ----------GSYCCVAKNVMGKAESSTQLTIE 728
                       Y C A N +G+A  + +L +E
Sbjct: 68  TISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 100

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 48.7 bits (115), Expect = 1e-07
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 11/95 (11%)

Query: 443 KAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWY----------KDNKKIKAGD 491
           K +  P+FTK +  +   +G     +CKV G P P+++W+                    
Sbjct: 4   KPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG 63

Query: 492 IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
             +LT +         YTC+AVN +G A  T+ ++
Sbjct: 64  NCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELL 98

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 40.6 bits (94), Expect = 8e-05
 Identities = 15/60 (25%), Positives = 24/60 (40%)

Query: 71  FNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 130
           + +         +     + +G   L I  V  DD  +Y+  A N  G +T   EL VE+
Sbjct: 42  WFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 101

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 59.4 bits (143), Expect = 1e-11
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 447 APFFTKELEAILT--EQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDI----FALTANPK 500
           AP + ++ E ++   +   V++ CKV G+P P ++W  + K +  G        L     
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGV 61

Query: 501 DPSSLGTYTCEAVNCMGAAFSTSRV 525
                G Y C A N  G  +  + V
Sbjct: 62  KNGDKGYYGCRATNEHGDKYFETLV 86

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 57.8 bits (139), Expect = 5e-11
 Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 7/94 (7%)

Query: 748 APKFIEGLKSCQ-ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH 806
           APK+ +  +        ++     +V+  P P V W  + + +         + T+    
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG------RATVTDSG 55

Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLN 840
           L I  ++  D+  + C ATN+ G       +++N
Sbjct: 56  LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 89

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 57.1 bits (137), Expect = 8e-11
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 6/92 (6%)

Query: 349 APAFIRRLHD-IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
           AP + ++    I VK G    +  ++       + W  N + L   +   T        +
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDS-----GL 56

Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
            +  V   D G + C A N  G  +    + V
Sbjct: 57  VIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 56.7 bits (136), Expect = 1e-10
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 14/88 (15%)

Query: 848 PKFLEELKAVLS--EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIH--------KIIS 897
           PK+ ++ + V+   +G  V + CKV G+P P + W  + + L  G           K + 
Sbjct: 3   PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVK 62

Query: 898 GEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
             D     G Y C A N  G       +
Sbjct: 63  NGDK----GYYGCRATNEHGDKYFETLV 86

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 53.6 bits (128), Expect = 1e-09
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 10/86 (11%)

Query: 652 PRFVESLKAVMT--DDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL---- 705
           P++ +  + V+       V+  CKV G P P + W  + + L  G          +    
Sbjct: 3   PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVK 62

Query: 706 ----GSYCCVAKNVMGKAESSTQLTI 727
               G Y C A N  G     T + +
Sbjct: 63  NGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 49.8 bits (118), Expect = 4e-08
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 9/95 (9%)

Query: 550 APIFIKEVEN-VKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGY 608
           AP + ++ E  +  K G    + C+V   P P  ++ +N +    +  +  +   GL   
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAK--PLSGGRATVTDSGL--- 56

Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
              I  ++  D G + C AT+  G K F    V V
Sbjct: 57  --VIKGVKNGDKGYYGCRATNEHGDKYFE-TLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 48.6 bits (115), Expect = 9e-08
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 16/102 (15%)

Query: 135 APAFIRRLHD-IAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 193
           AP + ++    I VK G    +  ++                P    +    P+ G R  
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTG-----------LPAPNVVWSHNAKPLSGGRAT 50

Query: 194 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
             +      L I+ V+  D G Y   A+NE G    +  + V
Sbjct: 51  VTDSG----LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 48.6 bits (115), Expect = 9e-08
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 16/102 (15%)

Query: 242 APAFIRRLHD-IAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 300
           AP + ++    I VK G    +  ++                P    +    P+ G R  
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTG-----------LPAPNVVWSHNAKPLSGGRAT 50

Query: 301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
             +      L I+ V+  D G Y   A+NE G    +  + V
Sbjct: 51  VTDSG----LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 96  LNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
           L I+ V+  D G Y   A+NE G    +  + V
Sbjct: 56  LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 4/58 (6%)

Query: 2  GIPTPQLIWYKDNKKIKAGDI----FALTANPKDPSSLGTYTCEAVNCMGAAFSTSRV 55
          G+P P ++W  + K +  G        L          G Y C A N  G  +  + V
Sbjct: 29 GLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLV 86

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 59.1 bits (142), Expect = 2e-11
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 10/88 (11%)

Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQ---------LT 700
           +P +++ +     D G  + + C   G P P ++W +D + L   +  +           
Sbjct: 1   QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKL 60

Query: 701 GTSSLGSYCCVAKNVMGKAESSTQLTIE 728
                G Y CVA+N  G   +S +LT++
Sbjct: 61  VLEDSGMYQCVAENKHGTVYASAELTVQ 88

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 57.2 bits (137), Expect = 1e-10
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 6/85 (7%)

Query: 847 KPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL 905
           +P +L+ +       G  +   C   G P+P ++W +DG+ L + +  ++  GE     L
Sbjct: 1   QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKL 60

Query: 906 -----GIYTCEAHNCMGTTSSSAAL 925
                G+Y C A N  GT  +SA L
Sbjct: 61  VLEDSGMYQCVAENKHGTVYASAEL 85

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 56.0 bits (134), Expect = 2e-10
 Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLK 808
           P +++ +   +A +  + +++   S  P P V W RD Q +   + +++         L+
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEV-----SGGELR 56

Query: 809 IHALEVADQAEWKCIATNDFGQSITSCFLK 838
              L + D   ++C+A N  G    S  L 
Sbjct: 57  FSKLVLEDSGMYQCVAENKHGTVYASAELT 86

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 54.9 bits (131), Expect = 6e-10
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 4/90 (4%)

Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL 409
           P ++  + D    +G+  R            + W R+ + L                +  
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSG----GELRF 57

Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
           S + L DSG + C+AEN  G  + S EL+V
Sbjct: 58  SKLVLEDSGMYQCVAENKHGTVYASAELTV 87

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 51.4 bits (122), Expect = 9e-09
 Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 6/85 (7%)

Query: 448 PFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIF-----ALTANPKD 501
           P +   +     + G  +   C   G P P + W +D + + + +        L  +   
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLV 61

Query: 502 PSSLGTYTCEAVNCMGAAFSTSRVI 526
               G Y C A N  G  ++++ + 
Sbjct: 62  LEDSGMYQCVAENKHGTVYASAELT 86

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.6 bits (120), Expect = 2e-08
 Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 14/102 (13%)

Query: 136 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAI 195
           P ++  + D    +G+  R             ++  +     S                 
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGE------- 54

Query: 196 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 237
                  L   ++  +D G Y   A N+ G   A  EL+V++
Sbjct: 55  -------LRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 89

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.6 bits (120), Expect = 2e-08
 Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 14/102 (13%)

Query: 243 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAI 302
           P ++  + D    +G+  R             ++  +     S                 
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGE------- 54

Query: 303 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
                  L   ++  +D G Y   A N+ G   A  EL+V++
Sbjct: 55  -------LRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 89

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.3 bits (114), Expect = 1e-07
 Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 7/93 (7%)

Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSI 610
           P ++  + + +A IG+     C     P P   +  + + +   +              +
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSG------GEL 55

Query: 611 EINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
             + L   D G ++CVA +  G    ++A + V
Sbjct: 56  RFSKLVLEDSGMYQCVAENKHGTVY-ASAELTV 87

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.5 bits (86), Expect = 7e-04
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 96  LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 130
           L   ++  +D G Y   A N+ G   A  EL+V++
Sbjct: 55  LRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 3e-11
 Identities = 16/88 (18%), Positives = 34/88 (38%)

Query: 352 FIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSS 411
            + +   + V  G  AR   +        + W R  + L  +  ++          ++SS
Sbjct: 2   ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 61

Query: 412 VSLFDSGRWTCLAENAVGRSHCSCELSV 439
           V   D G ++ + EN+ G+      L++
Sbjct: 62  VQASDEGNYSVVVENSEGKQEAEFTLTI 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 6e-09
 Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 10/87 (11%)

Query: 849 KFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL-- 905
           + L + +++ + EG +    C   G P PT+ W + G+ L     H++ + +  +     
Sbjct: 1   RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEIS 60

Query: 906 -------GIYTCEAHNCMGTTSSSAAL 925
                  G Y+    N  G   +   L
Sbjct: 61  SVQASDEGNYSVVVENSEGKQEAEFTL 87

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 5e-08
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 14/90 (15%)

Query: 653 RFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL------ 705
           R +   +++   +G    F C   G P PT+ W +  + L     +Q+T T         
Sbjct: 1   RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEIS 60

Query: 706 -------GSYCCVAKNVMGKAESSTQLTIE 728
                  G+Y  V +N  GK E+   LTI+
Sbjct: 61  SVQASDEGNYSVVVENSEGKQEAEFTLTIQ 90

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 2e-07
 Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 1/89 (1%)

Query: 750 KFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKI 809
           + +   +S      E  +F+      P P V+W R  Q +  S   ++            
Sbjct: 1   RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEIS 60

Query: 810 HALEVADQAEWKCIATNDFGQSITSCFLK 838
              + +D+  +  +  N  G+      L 
Sbjct: 61  SV-QASDEGNYSVVVENSEGKQEAEFTLT 88

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 7e-07
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 10/99 (10%)

Query: 138 FIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINR 197
            + +   + V  G  AR            C  D       ++  +G       R +    
Sbjct: 2   ILTKPRSMTVYEGESARF----------SCDTDGEPVPTVTWLRKGQVLSTSARHQVTTT 51

Query: 198 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
             ++   I  V+  D G YSV   N  G   A+F L+++
Sbjct: 52  KYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 90

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 7e-07
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 10/99 (10%)

Query: 245 FIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINR 304
            + +   + V  G  AR            C  D       ++  +G       R +    
Sbjct: 2   ILTKPRSMTVYEGESARF----------SCDTDGEPVPTVTWLRKGQVLSTSARHQVTTT 51

Query: 305 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
             ++   I  V+  D G YSV   N  G   A+F L+++
Sbjct: 52  KYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 90

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 2e-06
 Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 553 FIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEI 612
            + +  ++    G SA   C     P P     + ++G V ++   H +       + EI
Sbjct: 2   ILTKPRSMTVYEGESARFSCDTDGEPVPT--VTWLRKGQVLSTSARHQVTTTKYKSTFEI 59

Query: 613 NYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
           + ++A D+G +  V  +S G ++ +   + +
Sbjct: 60  SSVQASDEGNYSVVVENSEGKQE-AEFTLTI 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 3e-06
 Identities = 11/87 (12%), Positives = 25/87 (28%), Gaps = 10/87 (11%)

Query: 450 FTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL--- 505
              +  ++   +G +    C   G P P + W +  + +       +T      +     
Sbjct: 2   ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 61

Query: 506 ------GTYTCEAVNCMGAAFSTSRVI 526
                 G Y+    N  G   +   + 
Sbjct: 62  VQASDEGNYSVVVENSEGKQEAEFTLT 88

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 99  RRVRRDDGGRYSVTASNESGYSTAKFELSVE 129
             V+  D G YSV   N  G   A+F L+++
Sbjct: 60  SSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 90

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 58.0 bits (139), Expect = 6e-11
 Identities = 29/94 (30%), Positives = 34/94 (36%), Gaps = 12/94 (12%)

Query: 847 KPKFLEELKAVL----SEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKI------- 895
            P F E+    L    S    V L C+    P  T +W  +G ELK G   +        
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63

Query: 896 -ISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGF 928
            IS        G Y C A N  GT  S  A L F
Sbjct: 64  VISNPVKAKDAGSYQCVATNARGTVVSREASLRF 97

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 54.5 bits (130), Expect = 8e-10
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 13/93 (13%)

Query: 443 KAYKAPFFTKELEAILTEQG----TVSLECKVMGIPTPQLIWYKDNKKIKAGD------- 491
           ++Y  P F ++    L  +G     V+L C+    P     W  +  ++K G        
Sbjct: 1   RSY-GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV 59

Query: 492 -IFALTANPKDPSSLGTYTCEAVNCMGAAFSTS 523
               + +NP      G+Y C A N  G   S  
Sbjct: 60  AGDLVISNPVKAKDAGSYQCVATNARGTVVSRE 92

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.7 bits (120), Expect = 2e-08
 Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 17/93 (18%)

Query: 647 KNYRKPRFVESLKAVMTDDGL----VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGT 702
           ++Y  P F E     +  +G     V+  C+    P  T +W  +  ELK G   +    
Sbjct: 1   RSY-GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV 59

Query: 703 SSL------------GSYCCVAKNVMGKAESST 723
           +              GSY CVA N  G   S  
Sbjct: 60  AGDLVISNPVKAKDAGSYQCVATNARGTVVSRE 92

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.1 bits (116), Expect = 7e-08
 Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 6/96 (6%)

Query: 748 APKFIEGLKSC---QATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGV 804
            P F E        + +  E+   T +   +P     W  +  ++    + +        
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVA--G 61

Query: 805 CHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLN 840
             +  + ++  D   ++C+ATN  G ++ S    L 
Sbjct: 62  DLVISNPVKAKDAGSYQCVATNARG-TVVSREASLR 96

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.0 bits (100), Expect = 1e-05
 Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 4/85 (4%)

Query: 349 APAFIRRLHDIAVKVGT---RARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFY 405
            P F  +        G+   +  L    R+       W  N  +L+     R +      
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63

Query: 406 FIDLSSVSLFDSGRWTCLAENAVGR 430
            I  + V   D+G + C+A NA G 
Sbjct: 64  VI-SNPVKAKDAGSYQCVATNARGT 87

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 6/95 (6%)

Query: 550 APIFIKEVENVKAKIGT---SAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLG 606
            P+F ++  +     G+      L C+    P   +  W      ++             
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPA-TYRWKMNGTELKMGPDSRYRLV--A 60

Query: 607 GYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYV 641
           G  +  N ++A D G ++CVAT++ G      A +
Sbjct: 61  GDLVISNPVKAKDAGSYQCVATNARGTVVSREASL 95

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 1e-10
 Identities = 11/97 (11%), Positives = 30/97 (30%), Gaps = 4/97 (4%)

Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQV--VESDNVKILKETLGV 804
           + P F+  +++ +    +   F              +     V       +K+      +
Sbjct: 1   RTPHFLR-IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFI 59

Query: 805 CHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
               +      D  +++C+   + G    S + +L V
Sbjct: 60  ASFNVVNTTKRDAGKYRCMIRTEGG-VGISNYAELVV 95

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 2e-07
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 5/95 (5%)

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIR---SPTEIKIHWYRNDRKLEENKIYRTQHDGNFY 405
            P F+R + ++ V  G  A             +       + R     +I  T       
Sbjct: 2   TPHFLR-IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIA 60

Query: 406 FIDLSSVSLFDSGRWTCLAENAVGRSH-CSCELSV 439
             ++ + +  D+G++ C+     G       EL V
Sbjct: 61  SFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 2e-07
 Identities = 15/95 (15%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSI-YWYNKEGVVEASDKYHIMADGLGGY 608
            P F++ ++NV+   G  A  +C  +         +    +       +  + +      
Sbjct: 2   TPHFLR-IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIA 60

Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
           S  +      D G+++C+  +  GV   + A + V
Sbjct: 61  SFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 1e-06
 Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 9/102 (8%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRA 194
            P F+R + ++ V  G  A         T    +  L          +            
Sbjct: 2   TPHFLR-IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTS------ 54

Query: 195 INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKF-ELSV 235
            +R      N+    + D G+Y      E G   + + EL V
Sbjct: 55  -SRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 1e-06
 Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 9/102 (8%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRA 301
            P F+R + ++ V  G  A         T    +  L          +            
Sbjct: 2   TPHFLR-IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTS------ 54

Query: 302 INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKF-ELSV 342
            +R      N+    + D G+Y      E G   + + EL V
Sbjct: 55  -SRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 4e-06
 Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 12/93 (12%)

Query: 846 KKPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELK--AGDIHKIISGEDGTC 903
           + P FL      ++ G     +C  IG      + +  G +++       K+ S      
Sbjct: 1   RTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIA 60

Query: 904 CLGI----------YTCEAHNCMGTTSSSAALL 926
              +          Y C      G   S+ A L
Sbjct: 61  SFNVVNTTKRDAGKYRCMIRTEGGVGISNYAEL 93

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 10/90 (11%), Positives = 20/90 (22%), Gaps = 12/90 (13%)

Query: 446 KAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKA------------GDIF 493
           + P F +     +      + +C  +G        +     ++               I 
Sbjct: 1   RTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIA 60

Query: 494 ALTANPKDPSSLGTYTCEAVNCMGAAFSTS 523
           +           G Y C      G   S  
Sbjct: 61  SFNVVNTTKRDAGKYRCMIRTEGGVGISNY 90

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 55.7 bits (133), Expect = 4e-10
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 2/96 (2%)

Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGY 608
           P P ++ +  ++ AK G   ++ C     P     Y+ N + V    +      +   G 
Sbjct: 4   PVPQYVSK--DMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGK 61

Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL 644
            +        D+G + C   +  G  Q  +  + V+
Sbjct: 62  RLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV 97

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 46.8 bits (110), Expect = 4e-07
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 4/95 (4%)

Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETL-GVCH 806
            P+++   K   A   +          +P    ++F++ + V  +   +I +        
Sbjct: 5   VPQYVS--KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR 62

Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
           L        D+  + C   N  G       LKL V
Sbjct: 63  LLFKTTLPEDEGVYTCEVDNGVG-KPQKHSLKLTV 96

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 43.7 bits (102), Expect = 6e-06
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
            P ++ +  D+  K G    +     S      ++++N + +  N   R           
Sbjct: 5   VPQYVSK--DMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR 62

Query: 409 L--SSVSLFDSGRWTCLAENAVGRSHC-SCELSVL 440
           L   +    D G +TC  +N VG+    S +L+V+
Sbjct: 63  LLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV 97

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 12/90 (13%)

Query: 848 PKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKA-GDIHKIISGEDGTCCLG 906
           P+++ +   +   G    + C     P     +FK+G+++    +             L 
Sbjct: 6   PQYVSK-DMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLL 64

Query: 907 I----------YTCEAHNCMGTTSSSAALL 926
                      YTCE  N +G     +  L
Sbjct: 65  FKTTLPEDEGVYTCEVDNGVGKPQKHSLKL 94

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 13/87 (14%)

Query: 448 PFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIF-----------ALT 496
            + +K++ A         + C     P     ++K+ K +                  L 
Sbjct: 7   QYVSKDMMA--KAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLL 64

Query: 497 ANPKDPSSLGTYTCEAVNCMGAAFSTS 523
                P   G YTCE  N +G     S
Sbjct: 65  FKTTLPEDEGVYTCEVDNGVGKPQKHS 91

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 19/93 (20%)

Query: 652 PRFV-ESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT-----GTSSL 705
           P++V + + A   D       C     P     +FK+ +++      ++T         L
Sbjct: 6   PQYVSKDMMAKAGDV--TMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRL 63

Query: 706 ----------GSYCCVAKNVMGKAESST-QLTI 727
                     G Y C   N +GK +  + +LT+
Sbjct: 64  LFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV 96

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 4e-10
 Identities = 17/107 (15%), Positives = 31/107 (28%), Gaps = 2/107 (1%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKCQFDLN-NTIPFSFRAQGDHPIFGNRF 192
              F+ R  D  V VG        +  +                      G H    + +
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 193 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV 239
              ++    EL+I   +    G Y    S +  +  + F L+V   +
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHEAM 110

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 4e-10
 Identities = 17/107 (15%), Positives = 31/107 (28%), Gaps = 2/107 (1%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKCQFDLN-NTIPFSFRAQGDHPIFGNRF 299
              F+ R  D  V VG        +  +                      G H    + +
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 300 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQV 346
              ++    EL+I   +    G Y    S +  +  + F L+V   +
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHEAM 110

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 4e-07
 Identities = 13/103 (12%), Positives = 29/103 (28%), Gaps = 12/103 (11%)

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRS---PTEIKIHWYRN---------DRKLEENKIY 396
              F+ R  D  V VG        +          + W++           + L+ +  Y
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 397 RTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
                   + + ++      +G + C           +  L+V
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTV 106

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 4e-07
 Identities = 13/105 (12%), Positives = 33/105 (31%), Gaps = 11/105 (10%)

Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRS----------IYWYNKEGVVEASDKY 598
           P  +F+   ++ +  +G S     +V      +           +   +K G        
Sbjct: 3   PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62

Query: 599 HIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
           +  A  +  + + I   +    G ++C  ++       S   + V
Sbjct: 63  YDRASKVYLFELHITDAQPAFTGGYRCEVSTKDK-FDCSNFNLTV 106

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 1e-06
 Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 11/102 (10%)

Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISP---EPKVSWFRDDQQVVESDNVKI------- 797
              F+   +  + TV     F+ +V+ +     P V WF+     + S   +        
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 798 -LKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
                + +  L I   + A    ++C  +       ++  L 
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLT 105

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 5e-06
 Identities = 12/70 (17%), Positives = 25/70 (35%)

Query: 63  FLDNDDVPFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTA 122
           +     V  +   G H    + +   ++    EL+I   +    G Y    S +  +  +
Sbjct: 41  WFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCS 100

Query: 123 KFELSVESQV 132
            F L+V   +
Sbjct: 101 NFNLTVHEAM 110

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 22/101 (21%)

Query: 847 KPKFLEELKAV-LSEGGAVNLECKVIGVP---QPTLKWFKD--------GRELKAGDIHK 894
              F+   +   ++ GG++    +V G      P +KWFK           +        
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 895 IISGEDGTCCLGI----------YTCEAHNCMGTTSSSAAL 925
             + +     L I          Y CE         S+  L
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNL 104

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 18/105 (17%), Positives = 27/105 (25%), Gaps = 26/105 (24%)

Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFP---TPTLQWFKDNEELKP------------G 694
              FV   +      G  ++F  +V G      P ++WFK                    
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 695 DVYQLTGTSSL----------GSYCCVAKNVMGKAESSTQLTIED 729
           D         L          G Y C          S+  LT+ +
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHE 108

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 5e-10
 Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 4/102 (3%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIM----ADGL 605
             ++IK         G    LEC V        + W    G      +           +
Sbjct: 3   VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNI 62

Query: 606 GGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPK 647
             + +    +   D+G ++C A   S + +  +  ++V   K
Sbjct: 63  SFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTDVK 104

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 4e-08
 Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 7/100 (7%)

Query: 348 DAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKL-----EENKIYRTQHD 401
           D   +I+R  + ++  G    L   ++       + W + +        +    ++ + +
Sbjct: 2   DVQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKN 61

Query: 402 GNFYFIDLSSVSLFDSGRWTCLAENAVGRSHC-SCELSVL 440
            +F+ +    V   D+G + C A          S  L V 
Sbjct: 62  ISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVT 101

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 3e-06
 Identities = 14/99 (14%), Positives = 28/99 (28%), Gaps = 6/99 (6%)

Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPE-PKVSWFRDDQQVVESDNVK----ILKETL 802
              +I+          + F+    V      P V+W + +         +      ++ +
Sbjct: 3   VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNI 62

Query: 803 GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
               L    +   D   ++C A       I S    L V
Sbjct: 63  SFFILHFEPVLPNDNGSYRCSANFQSN-LIESHSTTLYV 100

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 6e-04
 Identities = 18/101 (17%), Positives = 27/101 (26%), Gaps = 21/101 (20%)

Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFP-TPTLQWFKDNEELKPGDVYQLTGTSSLGS-- 707
             +++         G     EC V      P + W K N         + T      +  
Sbjct: 4   QLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNIS 63

Query: 708 ----------------YCCVAKNVMGKAES-STQLTIEDIR 731
                           Y C A       ES ST L + D++
Sbjct: 64  FFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTDVK 104

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 20/96 (20%), Positives = 25/96 (26%), Gaps = 16/96 (16%)

Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIP-TPQLIWYKDNKKIKAGD------------- 491
              + K         G    LEC V      P + W K N                    
Sbjct: 3   VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNI 62

Query: 492 -IFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
             F L   P  P+  G+Y C A        S S  +
Sbjct: 63  SFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTL 98

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 14/95 (14%), Positives = 24/95 (25%), Gaps = 16/95 (16%)

Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQ-PTLKWFKDGRELKAGDIHKIISGEDGTCCL 905
             +++      +  G    LEC V      P + W K           +  S ++     
Sbjct: 4   QLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNIS 63

Query: 906 GI--------------YTCEAHNCMGTTSSSAALL 926
                           Y C A+       S +  L
Sbjct: 64  FFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTL 98

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 5e-10
 Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 5/89 (5%)

Query: 352 FIRRLHDIAVKVGTRARLLVEIRSPT-EIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLS 410
             ++L D     G R  L  E+      +K      +        YR + +G  + + + 
Sbjct: 3   VTKQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIE 62

Query: 411 SVSLFDSGRWTCLAENAVGRSHCSCELSV 439
             +  D+  ++ +          S +LSV
Sbjct: 63  GATKADAAEYSVMTTGG----QSSAKLSV 87

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 2e-09
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 1/81 (1%)

Query: 552 IFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIE 611
           +  K++E+  A  G    LEC+V         +   +E +     +Y I  +G   + + 
Sbjct: 2   MVTKQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEG-KKHILI 60

Query: 612 INYLEAVDDGEWKCVATSSSG 632
           I      D  E+  + T    
Sbjct: 61  IEGATKADAAEYSVMTTGGQS 81

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 2e-07
 Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 750 KFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETLGVCHLK 808
              + L+   A   E  +   +VS   +  V WF++ ++++     +  ++       L 
Sbjct: 2   MVTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILI 60

Query: 809 IHALEVADQAEWKCIATNDFG 829
           I     AD AE+  + T    
Sbjct: 61  IEGATKADAAEYSVMTTGGQS 81

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 9e-07
 Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 13/99 (13%)

Query: 138 FIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINR 197
             ++L D     G R  L  E+         F     I    +         +R+R    
Sbjct: 3   VTKQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPK---------SRYRIRVE 53

Query: 198 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
             +  L I    + D   YSV  +          +LSV+
Sbjct: 54  GKKHILIIEGATKADAAEYSVMTTGGQS----SAKLSVD 88

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 9e-07
 Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 13/99 (13%)

Query: 245 FIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINR 304
             ++L D     G R  L  E+         F     I    +         +R+R    
Sbjct: 3   VTKQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPK---------SRYRIRVE 53

Query: 305 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
             +  L I    + D   YSV  +          +LSV+
Sbjct: 54  GKKHILIIEGATKADAAEYSVMTTGGQS----SAKLSVD 88

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 4e-05
 Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 13/83 (15%)

Query: 449 FFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGD-----------IFALT 496
             TK+LE      G  V LEC+V       + W+K+ ++I  G               L 
Sbjct: 2   MVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILI 60

Query: 497 ANPKDPSSLGTYTCEAVNCMGAA 519
                 +    Y+        +A
Sbjct: 61  IEGATKADAAEYSVMTTGGQSSA 83

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 7e-04
 Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 13/82 (15%)

Query: 849 KFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGD-IHKIISGEDGTCCL- 905
              ++L+      G  V LEC+V       +KWFK+G E+  G      I  E     L 
Sbjct: 2   MVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILI 60

Query: 906 ---------GIYTCEAHNCMGT 918
                      Y+        +
Sbjct: 61  IEGATKADAAEYSVMTTGGQSS 82

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 21/91 (23%)

Query: 654 FVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGD-----VYQLTGTSSL-- 705
             + L+      G  V  EC+V       ++WFK+ EE+ PG      +        L  
Sbjct: 3   VTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILII 61

Query: 706 --------GSYCCVAKNVMGKAESSTQLTIE 728
                     Y  +        +SS +L+++
Sbjct: 62  EGATKADAAEYSVMTTG----GQSSAKLSVD 88

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.1 bits (126), Expect = 3e-09
 Identities = 17/91 (18%), Positives = 26/91 (28%)

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
            P  +     I +K G    L V+     +    W   D               +   I 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
             S    DSG +    +N +G      E+ V
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.9 bits (123), Expect = 6e-09
 Identities = 19/89 (21%), Positives = 26/89 (29%), Gaps = 10/89 (11%)

Query: 847 KPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKA---------GDIHKII 896
           KPK L   + + +  G   NLE   IG P PT  W                       I 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 897 SGEDGTCCLGIYTCEAHNCMGTTSSSAAL 925
                    G Y  +  N +G   +   +
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEV 90

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.0 bits (118), Expect = 4e-08
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 14/92 (15%)

Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSS----- 704
           KP+ + + + +    G   + E   +G P PT  W   +          +   SS     
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 705 --------LGSYCCVAKNVMGKAESSTQLTIE 728
                    G+Y    KN +G+ E+  ++ ++
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.9 bits (110), Expect = 4e-07
 Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 1/91 (1%)

Query: 748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
            PK +   +  +          V    +P+P  +W   D     +  + +         +
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLV-DAKSSTTSI 60

Query: 808 KIHALEVADQAEWKCIATNDFGQSITSCFLK 838
              + + AD   +K    N+ G+      + 
Sbjct: 61  FFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 18/102 (17%), Positives = 29/102 (28%), Gaps = 10/102 (9%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRA 194
            P  +     I +K G    L          +  F        ++               
Sbjct: 2   KPKILTASRKIKIKAGFTHNL----------EVDFIGAPDPTATWTVGDSGAALAPELLV 51

Query: 195 INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
             +   T +     +R D G Y +   NE G   A FE+ V+
Sbjct: 52  DAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 18/102 (17%), Positives = 29/102 (28%), Gaps = 10/102 (9%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRA 301
            P  +     I +K G    L          +  F        ++               
Sbjct: 2   KPKILTASRKIKIKAGFTHNL----------EVDFIGAPDPTATWTVGDSGAALAPELLV 51

Query: 302 INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
             +   T +     +R D G Y +   NE G   A FE+ V+
Sbjct: 52  DAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.2 bits (103), Expect = 3e-06
 Identities = 16/90 (17%), Positives = 26/90 (28%), Gaps = 10/90 (11%)

Query: 447 APFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKA---------GDIFALT 496
            P        I  + G T +LE   +G P P   W   +                  ++ 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 497 ANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
                 +  G Y  +  N +G   +   VI
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVI 91

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (94), Expect = 6e-05
 Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
            P  +     +K K G +  LE   +  P P + +     G   A +            S
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKS--STTS 59

Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
           I     +  D G +K    +  G  +     V V
Sbjct: 60  IFFPSAKRADSGNYKLKVKNELGEDEAI-FEVIV 92

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 4e-09
 Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 8/111 (7%)

Query: 138 FIRRLHDIAVKVGTRARLLVEIR-----SPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
           FI +     VKVG     + +++         IK        +         H      F
Sbjct: 3   FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAG---KHLQLKETF 59

Query: 193 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 243
              +R    E+ I + + +  G Y    + +  + +  F+L V       P
Sbjct: 60  ERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTP 110

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 4e-09
 Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 8/111 (7%)

Query: 245 FIRRLHDIAVKVGTRARLLVEIR-----SPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRF 299
           FI +     VKVG     + +++         IK        +         H      F
Sbjct: 3   FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAG---KHLQLKETF 59

Query: 300 RAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 350
              +R    E+ I + + +  G Y    + +  + +  F+L V       P
Sbjct: 60  ERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTP 110

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 2e-07
 Identities = 15/104 (14%), Positives = 32/104 (30%), Gaps = 12/104 (11%)

Query: 352 FIRRLHDIAVKVGTRARLLVEIRS---PTEIKIHWYRNDRKLEENKI---------YRTQ 399
           FI +     VKVG     + ++++     +  I W++       +K          +   
Sbjct: 3   FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 62

Query: 400 HDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPK 443
                + + +       +G + C          CS +L V    
Sbjct: 63  SRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 106

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 11/104 (10%)

Query: 751 FIEGLKSCQATVNEEFKFTVQVSISP---EPKVSWFRDDQQVVESDNVKILK-------- 799
           FIE  +     V E+  F  +V       +P + WF+     + S   K L+        
Sbjct: 3   FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 62

Query: 800 ETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPK 843
             +    ++I   +      ++C  T        S  L+++   
Sbjct: 63  SRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 106

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 14/106 (13%), Positives = 33/106 (31%), Gaps = 11/106 (10%)

Query: 552 IFIKEVENVKAKIGTSAILECQVLVPPW---PRSIYWYNKEGVVEASDKYHI-------M 601
           +FI++ +    K+G       +V        P   ++  K   + +    H+        
Sbjct: 2   LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFER 61

Query: 602 ADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPK 647
              +  + ++I   +    G ++C  T        S   + V    
Sbjct: 62  HSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCS-FDLEVHEST 106

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 11/59 (18%), Positives = 21/59 (35%)

Query: 78  HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAP 136
           H      F   +R    E+ I + + +  G Y    + +  + +  F+L V       P
Sbjct: 52  HLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTP 110

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 5e-09
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 848 PKFLEELKAV-LSEGGAVNLECKV-IGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL 905
           P F  E K + +       L C+        T+ W++   ++        +    G    
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQS 61

Query: 906 GIYTCEAHNCMGTTSSSAALL 926
            +++CEAHN  G  SS  A +
Sbjct: 62  TMFSCEAHNLKGLASSRTATV 82

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 2/78 (2%)

Query: 448 PFFTKELEAILTEQG-TVSLECKV-MGIPTPQLIWYKDNKKIKAGDIFALTANPKDPSSL 505
           PFFT E + +         L C+         ++W++   KI          N    +  
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQS 61

Query: 506 GTYTCEAVNCMGAAFSTS 523
             ++CEA N  G A S +
Sbjct: 62  TMFSCEAHNLKGLASSRT 79

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 7e-06
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 11/92 (11%)

Query: 350 PAFIRRLHDIAVKVGTRARL-LVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
           P F     D+AV      +L    +  P  + I W+R   K+       +          
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVL-------- 53

Query: 409 LSSVSLFDSGRWTCLAENAVGRSH-CSCELSV 439
            +   +  S  ++C A N  G +   +  + +
Sbjct: 54  -NVTGVTQSTMFSCEAHNLKGLASSRTATVHL 84

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 3e-05
 Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 10/93 (10%)

Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSI 610
           P F  E +++         L C+ + PP P +I W+     +        +         
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSV--------- 52

Query: 611 EINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
            +N         + C A +  G+     A VH+
Sbjct: 53  -LNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 84

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 7/83 (8%)

Query: 652 PRFVESLKAVMTDDG-LVSFECKV-VGFPTPTLQWFKDNEELKPGD----VYQLTGTSSL 705
           P F    K +           C+        T+ W++   ++        V  +TG +  
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQS 61

Query: 706 GSYCCVAKNVMGKAESST-QLTI 727
             + C A N+ G A S T  + +
Sbjct: 62  TMFSCEAHNLKGLASSRTATVHL 84

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 5e-09
 Identities = 12/86 (13%), Positives = 25/86 (29%)

Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEA 617
             +    G    L C V     P   +  +   V      Y  +++      + +  +E 
Sbjct: 4   VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVER 63

Query: 618 VDDGEWKCVATSSSGVKQFSAAYVHV 643
            D G + C        +     ++ V
Sbjct: 64  SDAGRYWCQVEDGGETEISQPVWLTV 89

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 6e-08
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 11/81 (13%)

Query: 857 VLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL----------- 905
            +S+G  V L C V G+ +P ++W KDG  ++  D   I   E                 
Sbjct: 7   TVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDA 66

Query: 906 GIYTCEAHNCMGTTSSSAALL 926
           G Y C+  +   T  S    L
Sbjct: 67  GRYWCQVEDGGETEISQPVWL 87

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 3e-06
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 2/83 (2%)

Query: 760 ATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVK-ILKETLGVCHLKIHALEVADQA 818
            +  +  K    V    EP + W +D   V   D +   + E   +  L + ++E +D  
Sbjct: 8   VSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAG 67

Query: 819 EWKCIATNDFGQSITSCFLKLNV 841
            + C   +    +  S  + L V
Sbjct: 68  RYWCQVEDGGE-TEISQPVWLTV 89

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 3e-06
 Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 11/76 (14%)

Query: 459 TEQGTVSLECKVMGIPTPQLIWYKDNKKIKA-----------GDIFALTANPKDPSSLGT 507
           ++   V L C V G+  P + W KD   ++              I  L+    + S  G 
Sbjct: 9   SQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGR 68

Query: 508 YTCEAVNCMGAAFSTS 523
           Y C+  +      S  
Sbjct: 69  YWCQVEDGGETEISQP 84

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 1e-05
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 358 DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHD--GNFYFIDLSSVSLF 415
            + V  G   +L   +    E  I W ++   ++                F+ L SV   
Sbjct: 5   KLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERS 64

Query: 416 DSGRWTCLAENAVGRSH-CSCELSV 439
           D+GR+ C  E+           L+V
Sbjct: 65  DAGRYWCQVEDGGETEISQPVWLTV 89

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 8e-05
 Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 16/77 (20%)

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSL---------------GSYCCVA 712
           V   C V G   P +QW KD   ++  D   +  +                  G Y C  
Sbjct: 14  VKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQV 73

Query: 713 KNVMGKAES-STQLTIE 728
           ++      S    LT+E
Sbjct: 74  EDGGETEISQPVWLTVE 90

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 9/94 (9%)

Query: 144 DIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTEL 203
            + V  G   +L   +               I +         +         +     L
Sbjct: 5   KLTVSQGQPVKLNCSVEG--------MEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFL 56

Query: 204 NIRRVRRDDGGRYSVTASNESGYSTAK-FELSVE 236
           +++ V R D GRY     +      ++   L+VE
Sbjct: 57  SLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE 90

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 9/94 (9%)

Query: 251 DIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTEL 310
            + V  G   +L   +               I +         +         +     L
Sbjct: 5   KLTVSQGQPVKLNCSVEG--------MEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFL 56

Query: 311 NIRRVRRDDGGRYSVTASNESGYSTAK-FELSVE 343
           +++ V R D GRY     +      ++   L+VE
Sbjct: 57  SLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE 90

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.2 bits (124), Expect = 6e-09
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 6/100 (6%)

Query: 346 VPDAPAFIRR--LHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGN 403
           VP  P    R  + +    +G    L+ +     E  + W ++   +E  +    +H  +
Sbjct: 2   VP--PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFS 59

Query: 404 FYFIDL--SSVSLFDSGRWTCLAENAVGRSHCSCELSVLV 441
               +L   +V   D   + C+AEN  G    S  L V  
Sbjct: 60  DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 99

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.4 bits (122), Expect = 1e-08
 Identities = 26/100 (26%), Positives = 35/100 (35%), Gaps = 19/100 (19%)

Query: 840 NVPKHYKKPKFLEELKAV---LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHK-I 895
           NVP     P        V    + G +V L C   G P+PT+ W KDG  ++  +     
Sbjct: 1   NVP-----PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEK 55

Query: 896 ISGEDGTCCL----------GIYTCEAHNCMGTTSSSAAL 925
               D +  L            Y C A N  G   +S  L
Sbjct: 56  HIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL 95

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.9 bits (113), Expect = 2e-07
 Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 1/96 (1%)

Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGY 608
           P     + + N  A +G S  L C     P P   +  + E +    +            
Sbjct: 4   PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 63

Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL 644
            + I  ++  D+ E+ C+A + +G +  S  ++ V 
Sbjct: 64  ELTIRNVDKNDEAEYVCIAENKAGEQDAS-IHLKVF 98

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.6 bits (112), Expect = 2e-07
 Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 3/96 (3%)

Query: 746 NKAPKFIEGLKSCQATVN--EEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLG 803
           N  P          AT N  +           PEP +SW +D + +   +          
Sbjct: 1   NVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSD 60

Query: 804 V-CHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
               L I  ++  D+AE+ CIA N  G+   S  LK
Sbjct: 61  DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 96

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.8 bits (110), Expect = 5e-07
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 13/79 (16%)

Query: 463 TVSLECKVMGIPTPQLIWYKDNKK-----------IKAGDIFALTANPKDPSSLGTYTCE 511
           +V+L C   G P P + W KD +            I + D   LT    D +    Y C 
Sbjct: 22  SVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCI 81

Query: 512 AVNCMGAAFSTSR--VIAR 528
           A N  G   ++    V A+
Sbjct: 82  AENKAGEQDASIHLKVFAK 100

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.4 bits (109), Expect = 7e-07
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 15/77 (19%)

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT-----GTSSL----------GSYCCVA 712
           V+  C   GFP PT+ W KD E ++  +           +S L            Y C+A
Sbjct: 23  VTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIA 82

Query: 713 KNVMGKAESSTQLTIED 729
           +N  G+ ++S  L +  
Sbjct: 83  ENKAGEQDASIHLKVFA 99

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.1 bits (103), Expect = 5e-06
 Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 12/106 (11%)

Query: 132 VPDAPAFIRR--LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFG 189
           VP  P    R  + +    +G    L+ +     E    +  +     +     +  IF 
Sbjct: 2   VP--PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIF- 58

Query: 190 NRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
                   D  +EL IR V ++D   Y   A N++G   A   L V
Sbjct: 59  -------SDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 97

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.1 bits (103), Expect = 5e-06
 Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 12/106 (11%)

Query: 239 VPDAPAFIRR--LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFG 296
           VP  P    R  + +    +G    L+ +     E    +  +     +     +  IF 
Sbjct: 2   VP--PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIF- 58

Query: 297 NRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
                   D  +EL IR V ++D   Y   A N++G   A   L V
Sbjct: 59  -------SDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 97

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 15/51 (29%), Positives = 22/51 (43%)

Query: 78  HPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
                +  + I  D  +EL IR V ++D   Y   A N++G   A   L V
Sbjct: 47  ENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 97

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 7e-09
 Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 5/92 (5%)

Query: 349 APAFIRRLHD-IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
           + AF ++L     V  G + RL VE+                      Y  +  G    +
Sbjct: 5   STAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTL 64

Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
            +S  SL D   + C+         CS EL V
Sbjct: 65  TISQCSLADDAAYQCVVGGE----KCSTELFV 92

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 8e-07
 Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 13/87 (14%)

Query: 846 KKPKFLEELKAVLS--EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTC 903
           K   F ++L+      +G  + L  ++       +KW K+G+E++      I        
Sbjct: 4   KSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKR 62

Query: 904 CL----------GIYTCEAHNCMGTTS 920
            L            Y C       +T 
Sbjct: 63  TLTISQCSLADDAAYQCVVGGEKCSTE 89

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 8e-06
 Identities = 17/84 (20%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 747 KAPKFIEGLKSC-QATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVC 805
           K+  F + L+   Q +   + + TV+++   + +V W ++ Q++  S +  I +      
Sbjct: 4   KSTAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKR 62

Query: 806 HLKIHALEVADQAEWKCIATNDFG 829
            L I    +AD A ++C+   +  
Sbjct: 63  TLTISQCSLADDAAYQCVVGGEKC 86

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 13/86 (15%)

Query: 446 KAPFFTKELEAILT--EQGTVSLECKVMGIPTPQLIWYKDNKKIKA----------GDIF 493
           K+  F K+LE      +   + L  ++      ++ W K+ ++I+           G   
Sbjct: 4   KSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKR 62

Query: 494 ALTANPKDPSSLGTYTCEAVNCMGAA 519
            LT +    +    Y C       + 
Sbjct: 63  TLTISQCSLADDAAYQCVVGGEKCST 88

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 1e-05
 Identities = 19/104 (18%), Positives = 27/104 (25%), Gaps = 17/104 (16%)

Query: 135 APAFIRRLHD-IAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 193
           + AF ++L     V  G + RL VE+                   +   G          
Sbjct: 5   STAFQKKLEPAYQVSKGHKIRLTVELADHD-----------AEVKWLKNGQEIQMSGSKY 53

Query: 194 AINRDGRTE-LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
                G    L I +    D   Y      E        EL V+
Sbjct: 54  IFESIGAKRTLTISQCSLADDAAYQCVVGGEKC----STELFVK 93

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 1e-05
 Identities = 19/104 (18%), Positives = 27/104 (25%), Gaps = 17/104 (16%)

Query: 242 APAFIRRLHD-IAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 300
           + AF ++L     V  G + RL VE+                   +   G          
Sbjct: 5   STAFQKKLEPAYQVSKGHKIRLTVELADHD-----------AEVKWLKNGQEIQMSGSKY 53

Query: 301 AINRDGRTE-LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
                G    L I +    D   Y      E        EL V+
Sbjct: 54  IFESIGAKRTLTISQCSLADDAAYQCVVGGEKC----STELFVK 93

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 12/85 (14%), Positives = 25/85 (29%), Gaps = 3/85 (3%)

Query: 549 PAPIFIKEVE-NVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGG 607
            +  F K++E   +   G    L  ++             +E  +  S            
Sbjct: 4   KSTAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGA--K 61

Query: 608 YSIEINYLEAVDDGEWKCVATSSSG 632
            ++ I+     DD  ++CV      
Sbjct: 62  RTLTISQCSLADDAAYQCVVGGEKC 86

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 9e-04
 Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 21/96 (21%)

Query: 650 RKPRFVESLKAVMT--DDGLVSFECKVVGFPTPTLQWFKDNEELKP----------GDVY 697
           +   F + L+          +    ++       ++W K+ +E++           G   
Sbjct: 4   KSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKR 62

Query: 698 QLTGTSSL----GSYCCVAKNVMGKAESSTQLTIED 729
            LT +        +Y CV        + ST+L +++
Sbjct: 63  TLTISQCSLADDAAYQCVVGG----EKCSTELFVKE 94

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 2e-08
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 14/105 (13%)

Query: 350 PAFIRRL-HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEE-------------NKI 395
           P     L  + +  VG     + ++ S  +  I W ++  K                   
Sbjct: 5   PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 64

Query: 396 YRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL 440
                D     + + +V+  D+G +TCLA N++G S  S  L+VL
Sbjct: 65  GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 109

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 4e-08
 Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 13/103 (12%)

Query: 749 PKFIEGL-KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQ------------VVESDNV 795
           P    GL  +    V  + +F  +V    +P + W +  ++            +      
Sbjct: 5   PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 64

Query: 796 KILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLK 838
            +      +  L I  +   D  E+ C+A N  G S  S +L 
Sbjct: 65  GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLT 107

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 6e-08
 Identities = 26/103 (25%), Positives = 35/103 (33%), Gaps = 24/103 (23%)

Query: 847 KPKFLEELKAVLS--EGGAVNLECKVIGVPQPTLKWFKDGREL------------KAGDI 892
           +P     L A  S   GG V   CKV    QP ++W K   +             K    
Sbjct: 4   RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKA 63

Query: 893 HKIISGEDGTCCL----------GIYTCEAHNCMGTTSSSAAL 925
             + + +     L          G YTC A N +G +  SA L
Sbjct: 64  AGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWL 106

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 8e-08
 Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 13/106 (12%)

Query: 551 PIFIKEV-ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG-----------VVEASDKY 598
           PI    +  N    +G      C+V     P   +  + E             ++     
Sbjct: 5   PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 64

Query: 599 HIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL 644
            +         + I  +   D GE+ C+A +S G+    +A++ VL
Sbjct: 65  GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISF-HSAWLTVL 109

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 1e-07
 Identities = 25/105 (23%), Positives = 33/105 (31%), Gaps = 28/105 (26%)

Query: 651 KPRFVESLKAVMT--DDGLVSFECKVVGFPTPTLQWFKDNEEL----------------K 692
           +P     L A  +    G V F CKV     P +QW K  E+                  
Sbjct: 4   RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKA 63

Query: 693 PGDVYQLTGTSSL----------GSYCCVAKNVMGKAESSTQLTI 727
            G          L          G Y C+A N +G +  S  LT+
Sbjct: 64  AGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 2e-07
 Identities = 21/104 (20%), Positives = 32/104 (30%), Gaps = 4/104 (3%)

Query: 136 PAFIRRL-HDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF---GNR 191
           P     L  + +  VG     + ++ S  +   Q+  +     S       P        
Sbjct: 5   PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 64

Query: 192 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
                      L IR V  +D G Y+  A N  G S     L+V
Sbjct: 65  GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 2e-07
 Identities = 21/104 (20%), Positives = 32/104 (30%), Gaps = 4/104 (3%)

Query: 243 PAFIRRL-HDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIF---GNR 298
           P     L  + +  VG     + ++ S  +   Q+  +     S       P        
Sbjct: 5   PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 64

Query: 299 FRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
                      L IR V  +D G Y+  A N  G S     L+V
Sbjct: 65  GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 3e-07
 Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 24/103 (23%)

Query: 448 PFFTKELEAILT--EQGTVSLECKVMGIPTPQLIWYKDNKKIKA---------------- 489
           P     L A  +    G V   CKV     P + W K  +K  +                
Sbjct: 5   PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 64

Query: 490 ------GDIFALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
                  +I  L          G YTC A N +G +F ++ + 
Sbjct: 65  GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLT 107

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 4e-04
 Identities = 13/49 (26%), Positives = 17/49 (34%)

Query: 80  IFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
           +               L IR V  +D G Y+  A N  G S     L+V
Sbjct: 60  VLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 3e-08
 Identities = 23/132 (17%), Positives = 33/132 (25%), Gaps = 28/132 (21%)

Query: 123 KFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKCQFDLNNTIPFSFRA 181
           K  L    ++PD          I V  G + RL V I   P               +   
Sbjct: 6   KIHLDCPGRIPD---------TIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPAR 56

Query: 182 QGDHPIF------------------GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNE 223
                                      R R      R+   +    ++D G Y+VT  N 
Sbjct: 57  PAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNP 116

Query: 224 SGYSTAKFELSV 235
            G       + V
Sbjct: 117 VGEDQVNLTVKV 128

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 3e-08
 Identities = 23/132 (17%), Positives = 33/132 (25%), Gaps = 28/132 (21%)

Query: 230 KFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKCQFDLNNTIPFSFRA 288
           K  L    ++PD          I V  G + RL V I   P               +   
Sbjct: 6   KIHLDCPGRIPD---------TIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPAR 56

Query: 289 QGDHPIF------------------GNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNE 330
                                      R R      R+   +    ++D G Y+VT  N 
Sbjct: 57  PAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNP 116

Query: 331 SGYSTAKFELSV 342
            G       + V
Sbjct: 117 VGEDQVNLTVKV 128

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 5e-07
 Identities = 18/119 (15%), Positives = 32/119 (26%), Gaps = 6/119 (5%)

Query: 11  YKDNKKIKAGDIFALTANPK-DPSSLGTYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDV 69
             D   + AG+   L      DP+    +            + +             D  
Sbjct: 15  IPDTIVVVAGNKLRLDVPISGDPAPTVIWQK-----AITQGNKAPARPAPDAPEDTGDSD 69

Query: 70  PFNRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 128
            +   +        R R      R+   +    ++D G Y+VT  N  G       + V
Sbjct: 70  EWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 128

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 7e-07
 Identities = 16/127 (12%), Positives = 35/127 (27%), Gaps = 3/127 (2%)

Query: 314 RVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEI 373
           ++  D  GR   T    +G +  + ++ +       P  I +                  
Sbjct: 6   KIHLDCPGRIPDTIVVVAG-NKLRLDVPISGDPA--PTVIWQKAITQGNKAPARPAPDAP 62

Query: 374 RSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHC 433
               +     +      E     R +   +     +      D G +T   +N VG    
Sbjct: 63  EDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQV 122

Query: 434 SCELSVL 440
           +  + V+
Sbjct: 123 NLTVKVI 129

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 14/107 (13%), Positives = 25/107 (23%), Gaps = 38/107 (35%)

Query: 857 VLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKI--------------------- 895
           V+  G  + L+  + G P PT+ W K   +                              
Sbjct: 20  VVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLC 79

Query: 896 -------ISGEDGTCCL----------GIYTCEAHNCMGTTSSSAAL 925
                  +                   G+YT    N +G    +  +
Sbjct: 80  ETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTV 126

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 7e-05
 Identities = 15/123 (12%), Positives = 30/123 (24%), Gaps = 33/123 (26%)

Query: 749 PKFI-----EGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI------ 797
           PK           +       + +  V +S  P P V W +   Q  ++           
Sbjct: 5   PKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPED 64

Query: 798 ----------------------LKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSC 835
                                 ++ T       +   E  D+  +     N  G+   + 
Sbjct: 65  TGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNL 124

Query: 836 FLK 838
            +K
Sbjct: 125 TVK 127

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 30/118 (25%)

Query: 555 KEVENVKAKIGTSAILECQVLVPPWPRSIYWYN--------------------------- 587
           +  + +    G    L+  +   P P  I+                              
Sbjct: 14  RIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVF 73

Query: 588 -KEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL 644
            K+ + E   +  +           +   E  D+G +     +  G  Q +   V V+
Sbjct: 74  DKKLLCETEGRVRVETTK-DRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVN-LTVKVI 129

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 5e-04
 Identities = 13/104 (12%), Positives = 24/104 (23%), Gaps = 42/104 (40%)

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQLT--------------------------- 700
           +  +  + G P PT+ W K   +                                     
Sbjct: 27  LRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVR 86

Query: 701 -----GTSSL----------GSYCCVAKNVMGKAESSTQLTIED 729
                  S            G Y    KN +G+ + +  + + D
Sbjct: 87  VETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 130

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.4 bits (119), Expect = 4e-08
 Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 8/101 (7%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKET------ 801
           P           T+      T      SP  + SWF+D   ++ +D  K           
Sbjct: 3   PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 62

Query: 802 -LGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
                 L    +   D  E+ C A N +G ++ S    ++ 
Sbjct: 63  DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDA 103

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.0 bits (118), Expect = 6e-08
 Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 11/105 (10%)

Query: 346 VPDAPAFIRRLHDIAVKVGTRARLLVEI-RSPTEIKIHWYRNDRKLEENKIYRTQHDGNF 404
           VP  P+        +V +G RA L           +  W+++   +      +T+   N 
Sbjct: 1   VP--PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNS 58

Query: 405 YFID--------LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV 441
            F             V+ FDSG + C A+N  G +  S    +  
Sbjct: 59  SFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDA 103

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.1 bits (113), Expect = 2e-07
 Identities = 23/98 (23%), Positives = 29/98 (29%), Gaps = 20/98 (20%)

Query: 846 KKPKFLEELKAVLSEGGAVNLECKVI-GVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC 904
            KP            G    L C    G P     WFKDG  +   D  K  +  + +  
Sbjct: 4   SKPTISVPSSVT--IGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 61

Query: 905 L-----------------GIYTCEAHNCMGTTSSSAAL 925
           +                 G Y C+A N  GT   S A 
Sbjct: 62  IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAA 99

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 8/100 (8%)

Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSI 610
           P            IG  A+L C       P    W+     +  +D     A     ++I
Sbjct: 3   PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 62

Query: 611 -------EINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
                    + + A D GE+ C A +  G    S A  H+
Sbjct: 63  DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEA-AHM 101

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 18/101 (17%), Positives = 26/101 (25%), Gaps = 24/101 (23%)

Query: 650 RKPRFVESLKAVMTDDGLVSFECKVV-GFPTPTLQWFKDNEELKPGDVYQLTGTSSL--- 705
            KP         + +       C    G P     WFKD   +   D  +     +    
Sbjct: 4   SKPTISVPSSVTIGNR--AVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 61

Query: 706 ------------------GSYCCVAKNVMGKAESSTQLTIE 728
                             G Y C A+N  G A  S    ++
Sbjct: 62  IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 102

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.1 bits (95), Expect = 7e-05
 Identities = 18/106 (16%), Positives = 31/106 (29%), Gaps = 5/106 (4%)

Query: 132 VPDAPAFIRRLHDIAVKVGTRARLLVEI-RSPTEIKCQFDLNNTIPFSFRAQGDHPIFGN 190
           VP  P+        +V +G RA L           +  +  +     +  A+       +
Sbjct: 1   VP--PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNS 58

Query: 191 RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
            F    + G        V   D G Y   A N  G +       ++
Sbjct: 59  SFTIDPKSGDLI--FDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 102

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.1 bits (95), Expect = 7e-05
 Identities = 18/106 (16%), Positives = 31/106 (29%), Gaps = 5/106 (4%)

Query: 239 VPDAPAFIRRLHDIAVKVGTRARLLVEI-RSPTEIKCQFDLNNTIPFSFRAQGDHPIFGN 297
           VP  P+        +V +G RA L           +  +  +     +  A+       +
Sbjct: 1   VP--PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNS 58

Query: 298 RFRAINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
            F    + G        V   D G Y   A N  G +       ++
Sbjct: 59  SFTIDPKSGDLI--FDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 102

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (88), Expect = 5e-04
 Identities = 17/86 (19%), Positives = 23/86 (26%), Gaps = 18/86 (20%)

Query: 458 LTEQGTVSLECKV-MGIPTPQLIWYKDNKKIKAGDIFALTANPK---------------- 500
           +T      L C    G P  +  W+KD   +   D     A                   
Sbjct: 14  VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDP 73

Query: 501 -DPSSLGTYTCEAVNCMGAAFSTSRV 525
                 G Y C+A N  G A  +   
Sbjct: 74  VTAFDSGEYYCQAQNGYGTAMRSEAA 99

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.4 bits (117), Expect = 5e-08
 Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 4/88 (4%)

Query: 443 KAYKAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFA---LTAN 498
           + Y      K         G  V+LEC   G P PQ+ W K +    +  + +   L   
Sbjct: 1   RQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQ 60

Query: 499 PKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
             D    GTY CEA N  G      R+I
Sbjct: 61  NVDFEDEGTYECEAENIKGRDTYQGRII 88

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.0 bits (116), Expect = 6e-08
 Identities = 20/88 (22%), Positives = 27/88 (30%), Gaps = 6/88 (6%)

Query: 843 KHYKKPKFLEEL--KAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGED 900
           + Y  P    +         G  V LEC   G P P +KW K      +  +        
Sbjct: 1   RQYA-PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHI 59

Query: 901 GTCCL---GIYTCEAHNCMGTTSSSAAL 925
                   G Y CEA N  G  +    +
Sbjct: 60  QNVDFEDEGTYECEAENIKGRDTYQGRI 87

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.7 bits (115), Expect = 8e-08
 Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 7/92 (7%)

Query: 349 APAFIRRL-HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
           AP+   +   D     G    L          +I W +       +    ++   +   +
Sbjct: 4   APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKL------DGSQTSKWLSSEPLL 57

Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
            + +V   D G + C AEN  GR      + +
Sbjct: 58  HIQNVDFEDEGTYECEAENIKGRDTYQGRIII 89

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.1 bits (111), Expect = 3e-07
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 7/68 (10%)

Query: 668 VSFECKVVGFPTPTLQWFKDNEELKPGDVYQL-------TGTSSLGSYCCVAKNVMGKAE 720
           V+ EC   G P P ++W K +       +                G+Y C A+N+ G+  
Sbjct: 23  VTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDT 82

Query: 721 SSTQLTIE 728
              ++ I 
Sbjct: 83  YQGRIIIH 90

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.3 bits (101), Expect = 6e-06
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 8/94 (8%)

Query: 748 APKFIEGL-KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH 806
           AP           A   +          +P P++ W + D                    
Sbjct: 4   APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSE-------PL 56

Query: 807 LKIHALEVADQAEWKCIATNDFGQSITSCFLKLN 840
           L I  ++  D+  ++C A N  G+      + ++
Sbjct: 57  LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 90

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.3 bits (96), Expect = 3e-05
 Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 9/95 (9%)

Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGY 608
              I  K   +  A  G    LEC     P P+  +           D            
Sbjct: 4   APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKL--------DGSQTSKWLSSEP 55

Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
            + I  ++  D+G ++C A +  G   +    + +
Sbjct: 56  LLHIQNVDFEDEGTYECEAENIKGRDTYQ-GRIII 89

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.2 bits (93), Expect = 8e-05
 Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 17/104 (16%)

Query: 135 APAFIRRL-HDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 193
           AP+   +   D     G    L          +C    N      +R            +
Sbjct: 4   APSIKAKFPADTYALTGQMVTL----------ECFAFGNPVPQIKWR----KLDGSQTSK 49

Query: 194 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 237
            ++ +    L+I+ V  +D G Y   A N  G  T +  + + +
Sbjct: 50  WLSSEPL--LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA 91

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.2 bits (93), Expect = 8e-05
 Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 17/104 (16%)

Query: 242 APAFIRRL-HDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFR 300
           AP+   +   D     G    L          +C    N      +R            +
Sbjct: 4   APSIKAKFPADTYALTGQMVTL----------ECFAFGNPVPQIKWR----KLDGSQTSK 49

Query: 301 AINRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 344
            ++ +    L+I+ V  +D G Y   A N  G  T +  + + +
Sbjct: 50  WLSSEPL--LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA 91

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.3 bits (88), Expect = 4e-04
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 96  LNIRRVRRDDGGRYSVTASNESGYSTAKFELSVES 130
           L+I+ V  +D G Y   A N  G  T +  + + +
Sbjct: 57  LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA 91

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 5e-08
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 1/90 (1%)

Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL 409
           P    ++ + +V VG    L  ++      +  W   + +     +           +  
Sbjct: 3   PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL-A 61

Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSV 439
           +  S  +    TC AEN VGR+  S +++V
Sbjct: 62  NVTSDLNRKNVTCWAENDVGRAEVSVQVNV 91

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 5e-06
 Identities = 16/87 (18%), Positives = 25/87 (28%), Gaps = 9/87 (10%)

Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIH--------KIISG 898
           P    ++    +  G  V L C+V G       W     E  A  +           ++ 
Sbjct: 3   PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 62

Query: 899 EDGTCCLGIYTCEAHNCMGTTSSSAAL 925
                     TC A N +G    S  +
Sbjct: 63  VTSDLNRKNVTCWAENDVGRAEVSVQV 89

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 8e-05
 Identities = 11/92 (11%), Positives = 29/92 (31%), Gaps = 2/92 (2%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLK 808
           P     + +    V ++     QV      +  W   + +   +        +  +    
Sbjct: 3   PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPS--LGLTL 60

Query: 809 IHALEVADQAEWKCIATNDFGQSITSCFLKLN 840
            +     ++    C A ND G++  S  + ++
Sbjct: 61  ANVTSDLNRKNVTCWAENDVGRAEVSVQVNVS 92

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 3e-04
 Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 13/89 (14%)

Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGD------------VYQ 698
           P     +     D G  V   C+V G       W     E                 +  
Sbjct: 3   PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 62

Query: 699 LTGTSSLGSYCCVAKNVMGKAESSTQLTI 727
           +T   +  +  C A+N +G+AE S Q+ +
Sbjct: 63  VTSDLNRKNVTCWAENDVGRAEVSVQVNV 91

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 10/100 (10%), Positives = 28/100 (28%), Gaps = 11/100 (11%)

Query: 136 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAI 195
           P    ++ + +V VG    L  ++      +  + L            +        ++ 
Sbjct: 3   PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILT-----------ELEQSATVMKSG 51

Query: 196 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
                           +    +  A N+ G +    +++V
Sbjct: 52  GLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV 91

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 10/100 (10%), Positives = 28/100 (28%), Gaps = 11/100 (11%)

Query: 243 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAI 302
           P    ++ + +V VG    L  ++      +  + L            +        ++ 
Sbjct: 3   PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILT-----------ELEQSATVMKSG 51

Query: 303 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
                           +    +  A N+ G +    +++V
Sbjct: 52  GLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV 91

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 49.0 bits (116), Expect = 7e-08
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 352 FIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSS 411
             + L+ + V VG  A   +E+  P  +   W    + L  +       DG  + + L +
Sbjct: 4   VEKPLYGVEVFVGETAHFEIELSEPD-VHGQWKLKGQPLTASPDCEIIEDGKKHILILHN 62

Query: 412 VSLFDSGRWTCLAENAVGRSHCSCELSV 439
             L  +G  +  A NA      +  L V
Sbjct: 63  CQLGMTGEVSFQAANA----KSAANLKV 86

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 750 KFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKI 809
           +  + L   +  V E   F +++S  P+    W    Q +  S + +I+++      L +
Sbjct: 3   EVEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLTASPDCEIIEDG-KKHILIL 60

Query: 810 HALEVADQAEWKCIATNDFG 829
           H  ++    E    A N   
Sbjct: 61  HNCQLGMTGEVSFQAANAKS 80

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 6e-05
 Identities = 9/80 (11%), Positives = 26/80 (32%), Gaps = 3/80 (3%)

Query: 553 FIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEI 612
             K +  V+  +G +A  E ++  P          +      +     + +    + + +
Sbjct: 4   VEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQP---LTASPDCEIIEDGKKHILIL 60

Query: 613 NYLEAVDDGEWKCVATSSSG 632
           +  +    GE    A ++  
Sbjct: 61  HNCQLGMTGEVSFQAANAKS 80

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 15/99 (15%)

Query: 138 FIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINR 197
             + L+ + V VG  A   +E+  P            +   ++ +G           I  
Sbjct: 4   VEKPLYGVEVFVGETAHFEIELSEP-----------DVHGQWKLKGQPLTASPDCEIIED 52

Query: 198 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
             +  L +   +    G  S  A+N          L V+
Sbjct: 53  GKKHILILHNCQLGMTGEVSFQAANAKS----AANLKVK 87

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 15/99 (15%)

Query: 245 FIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINR 304
             + L+ + V VG  A   +E+  P            +   ++ +G           I  
Sbjct: 4   VEKPLYGVEVFVGETAHFEIELSEP-----------DVHGQWKLKGQPLTASPDCEIIED 52

Query: 305 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
             +  L +   +    G  S  A+N          L V+
Sbjct: 53  GKKHILILHNCQLGMTGEVSFQAANAKS----AANLKVK 87

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 14/92 (15%), Positives = 26/92 (28%), Gaps = 19/92 (20%)

Query: 653 RFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGS---- 707
              + L  V    G    FE ++   P    QW    + L      ++            
Sbjct: 3   EVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILH 61

Query: 708 ---------YCCVAKNVMGKAESSTQLTIEDI 730
                        A N    A+S+  L ++++
Sbjct: 62  NCQLGMTGEVSFQAAN----AKSAANLKVKEL 89

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.004
 Identities = 13/80 (16%), Positives = 22/80 (27%), Gaps = 11/80 (13%)

Query: 450 FTKELEAI-LTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIF---------ALTANP 499
             K L  + +    T   E ++   P     W    + + A              L  + 
Sbjct: 4   VEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHN 62

Query: 500 KDPSSLGTYTCEAVNCMGAA 519
                 G  + +A N   AA
Sbjct: 63  CQLGMTGEVSFQAANAKSAA 82

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 8e-08
 Identities = 12/100 (12%), Positives = 26/100 (26%), Gaps = 6/100 (6%)

Query: 350 PAFIR-RLHDIAVKVGTRARLLVEI---RSPTEIKIHWYRNDRKLEENKIYRTQHDGNFY 405
           P  +   L    V VG    +   +        + +  +R +  L      +        
Sbjct: 2   PRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEA 61

Query: 406 FIDL--SSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPK 443
                 ++        ++CLA   +     +       PK
Sbjct: 62  TATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSAPK 101

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 1e-07
 Identities = 16/101 (15%), Positives = 29/101 (28%), Gaps = 5/101 (4%)

Query: 749 PKFIE-GLKSCQATVNEEFKFTVQVSIS---PEPKVSWFRDDQQVVESDNVKILKETLGV 804
           P+ +   L+     V + F    +V          +  FR ++ +      K        
Sbjct: 2   PRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEA 61

Query: 805 CH-LKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKH 844
                  A        + C+A  D      + F K + PK 
Sbjct: 62  TATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSAPKM 102

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 4e-06
 Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 14/81 (17%)

Query: 856 AVLSEGGAVNLECKVIGV---PQPTLKWFKDGRELKAGDIHKIISGEDGTCCL------- 905
            +++ G +  +EC+V  V      TL  F+    L      K                  
Sbjct: 12  TLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADR 71

Query: 906 ----GIYTCEAHNCMGTTSSS 922
                 ++C A   + +   +
Sbjct: 72  EDGHRNFSCLAVLDLMSRGGN 92

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 8e-08
 Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 7/100 (7%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQV-SISPEPKVSWFRDDQQVVESDNVKILKETLGVCHL 807
           P          AT+      T      SP  + +WF+D   +  +               
Sbjct: 3   PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 62

Query: 808 ------KIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
                     L  +D  E+ C A N +G  +TS  +++  
Sbjct: 63  PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 102

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 4e-07
 Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 10/104 (9%)

Query: 346 VPDAPAFIRRLHDIAVKVGTRARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDGNF 404
           VP  P+        +  +G RA L    +      +  W+++   +  N         + 
Sbjct: 1   VP--PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSS 58

Query: 405 YFID-------LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV 441
           Y ++          +S  D+G ++C A N  G    S  + +  
Sbjct: 59  YVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 102

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 8e-07
 Identities = 22/97 (22%), Positives = 26/97 (26%), Gaps = 19/97 (19%)

Query: 846 KKPKFLEELKAVLSEGGAVNLECKVI-GVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC 904
            KP       A    G    L C    G P     WFKDG  +                 
Sbjct: 4   SKPTVNIPSSAT--IGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 61

Query: 905 LG----------------IYTCEAHNCMGTTSSSAAL 925
                              Y+CEA N  GT  +S A+
Sbjct: 62  NPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAV 98

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 18/100 (18%), Positives = 27/100 (27%), Gaps = 23/100 (23%)

Query: 650 RKPRFVESLKAVMTDDGLVSFECKVV-GFPTPTLQWFKDNEELKPGDVYQLTGTSSLGS- 707
            KP       A + +       C    G P     WFKD   +          ++S    
Sbjct: 4   SKPTVNIPSSATIGNR--AVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 61

Query: 708 -------------------YCCVAKNVMGKAESSTQLTIE 728
                              Y C A+N  G   +S  + +E
Sbjct: 62  NPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 101

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.8 bits (115), Expect = 9e-08
 Identities = 16/88 (18%), Positives = 26/88 (29%), Gaps = 9/88 (10%)

Query: 847 KPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCCL 905
           K  F          EG    + C V+    PT+ W   GR++      + I   +    +
Sbjct: 1   KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI 60

Query: 906 --------GIYTCEAHNCMGTTSSSAAL 925
                   G Y CE         +   +
Sbjct: 61  RGIKKTDEGTYRCEGRILARGEINFKDI 88

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.4 bits (114), Expect = 1e-07
 Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 1/92 (1%)

Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL 409
             F         K G  A ++ ++ S     I W    R +   K  R     N Y   +
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ-I 60

Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSVLV 441
             +   D G + C             ++ V+V
Sbjct: 61  RGIKKTDEGTYRCEGRILARGEINFKDIQVIV 92

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.7 bits (107), Expect = 1e-06
 Identities = 14/93 (15%), Positives = 33/93 (35%), Gaps = 2/93 (2%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLK 808
             F       +    E+      V  S  P + W    + V+   +V+ +  +    +L+
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS--NNYLQ 59

Query: 809 IHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
           I  ++  D+  ++C         I    +++ V
Sbjct: 60  IRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 92

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.0 bits (100), Expect = 1e-05
 Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSI 610
            +F       + K G  A++ C V+    P  I+ +    V+   D   I+        +
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS---NNYL 58

Query: 611 EINYLEAVDDGEWKCVATSSSG 632
           +I  ++  D+G ++C     + 
Sbjct: 59  QIRGIKKTDEGTYRCEGRILAR 80

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.6 bits (99), Expect = 1e-05
 Identities = 12/87 (13%), Positives = 23/87 (26%), Gaps = 9/87 (10%)

Query: 448 PFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKD----- 501
             F         ++G    + C V+    P +IW    + +             +     
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIR 61

Query: 502 ---PSSLGTYTCEAVNCMGAAFSTSRV 525
               +  GTY CE         +   +
Sbjct: 62  GIKKTDEGTYRCEGRILARGEINFKDI 88

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 13/100 (13%), Positives = 26/100 (26%), Gaps = 11/100 (11%)

Query: 136 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAI 195
             F         K G  A ++ ++ S           +  P          +   +    
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVS-----------SLPPTIIWKHKGRDVILKKDVRF 50

Query: 196 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
                  L IR +++ D G Y       +       ++ V
Sbjct: 51  IVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 90

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 13/100 (13%), Positives = 26/100 (26%), Gaps = 11/100 (11%)

Query: 243 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAI 302
             F         K G  A ++ ++ S           +  P          +   +    
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVS-----------SLPPTIIWKHKGRDVILKKDVRF 50

Query: 303 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
                  L IR +++ D G Y       +       ++ V
Sbjct: 51  IVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 90

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.7 bits (94), Expect = 6e-05
 Identities = 12/90 (13%), Positives = 25/90 (27%), Gaps = 13/90 (14%)

Query: 651 KPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTG-------- 701
           K  F  +       +G      C VV    PT+ W     ++      +           
Sbjct: 1   KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI 60

Query: 702 ----TSSLGSYCCVAKNVMGKAESSTQLTI 727
                +  G+Y C  + +     +   + +
Sbjct: 61  RGIKKTDEGTYRCEGRILARGEINFKDIQV 90

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 3/81 (3%)

Query: 651 KPRFVESL--KAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGS 707
            PR  E          +    +  C+  G P P L+  KD     P            G+
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGT 61

Query: 708 YCCVAKNVMGKAESSTQLTIE 728
           Y C A++  G+      + + 
Sbjct: 62  YLCRARSTQGEVTREVTVNVL 82

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 3e-07
 Identities = 16/82 (19%), Positives = 24/82 (29%), Gaps = 7/82 (8%)

Query: 847 KPKFLEELK---AVLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTC 903
            P+  E          E       C+  G P P LK  KDG           ++ +    
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEG- 60

Query: 904 CLGIYTCEAHNCMGTTSSSAAL 925
               Y C A +  G  +    +
Sbjct: 61  ---TYLCRARSTQGEVTREVTV 79

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 10/96 (10%), Positives = 25/96 (26%), Gaps = 15/96 (15%)

Query: 349 APAFIRRLH--DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYF 406
            P    R    +      ++   + +       ++   +                     
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK-------------DGTFPLPI 48

Query: 407 IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
            +  +V+    G + C A +  G       ++VL P
Sbjct: 49  GESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 84

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 17/84 (20%), Positives = 23/84 (27%), Gaps = 6/84 (7%)

Query: 445 YKAPFFTKELEAILT--EQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIFALTANPKDP 502
           Y      ++     T  E    +  C+  G P P+L   KD                   
Sbjct: 1   YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGES----VTVTR 56

Query: 503 SSLGTYTCEAVNCMGAAFSTSRVI 526
              GTY C A +  G       V 
Sbjct: 57  DLEGTYLCRARSTQGEVTREVTVN 80

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 47.3 bits (111), Expect = 3e-07
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 2/94 (2%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
            P+   +   V  +     +LEC +          W          +    +       S
Sbjct: 2   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRK--DEGS 59

Query: 610 IEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
           +     +A D+G ++C A + +GV          
Sbjct: 60  LVFLRPQASDEGHYQCFAETPAGVASSRVISFRK 93

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 47.0 bits (110), Expect = 4e-07
 Identities = 9/88 (10%), Positives = 23/88 (26%), Gaps = 1/88 (1%)

Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCH 806
           K P   +         N        +  + +     ++ D +                  
Sbjct: 1   KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRK-DEGS 59

Query: 807 LKIHALEVADQAEWKCIATNDFGQSITS 834
           L     + +D+  ++C A    G + + 
Sbjct: 60  LVFLRPQASDEGHYQCFAETPAGVASSR 87

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 44.3 bits (103), Expect = 3e-06
 Identities = 11/83 (13%), Positives = 25/83 (30%)

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
            P    +  ++  +      L   I    +   + ++ D K    + +      +   + 
Sbjct: 2   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLV 61

Query: 409 LSSVSLFDSGRWTCLAENAVGRS 431
                  D G + C AE   G +
Sbjct: 62  FLRPQASDEGHYQCFAETPAGVA 84

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 43.9 bits (102), Expect = 5e-06
 Identities = 22/91 (24%), Positives = 30/91 (32%), Gaps = 12/91 (13%)

Query: 446 KAPFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKK---------IKAGDIFAL 495
           K P    +   +L  +     LEC + G        +K + K             D  +L
Sbjct: 1   KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSL 60

Query: 496 TANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
                  S  G Y C A    G A  +SRVI
Sbjct: 61  VFLRPQASDEGHYQCFAETPAGVA--SSRVI 89

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 42.0 bits (97), Expect = 2e-05
 Identities = 13/96 (13%), Positives = 27/96 (28%), Gaps = 10/96 (10%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRA 194
            P    +  ++  +      L          +C  + N+        +           A
Sbjct: 2   YPVLKDQPAEVLFRENNPTVL----------ECIIEGNDQGVKYSWKKDGKSYNWQEHNA 51

Query: 195 INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK 230
             R     L   R +  D G Y   A   +G ++++
Sbjct: 52  ALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSR 87

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 42.0 bits (97), Expect = 2e-05
 Identities = 13/96 (13%), Positives = 27/96 (28%), Gaps = 10/96 (10%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRA 301
            P    +  ++  +      L          +C  + N+        +           A
Sbjct: 2   YPVLKDQPAEVLFRENNPTVL----------ECIIEGNDQGVKYSWKKDGKSYNWQEHNA 51

Query: 302 INRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAK 337
             R     L   R +  D G Y   A   +G ++++
Sbjct: 52  ALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSR 87

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 41.2 bits (95), Expect = 4e-05
 Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 10/91 (10%)

Query: 846 KKPKFLEELKAV-LSEGGAVNLECKVIGVPQPTLKWFKDG-RELKAGDIHKIISGEDGTC 903
           K P   ++   V   E     LEC + G  Q     +K   +     + +  +  ++G+ 
Sbjct: 1   KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSL 60

Query: 904 CL--------GIYTCEAHNCMGTTSSSAALL 926
                     G Y C A    G  SS     
Sbjct: 61  VFLRPQASDEGHYQCFAETPAGVASSRVISF 91

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 14/88 (15%), Positives = 24/88 (27%), Gaps = 14/88 (15%)

Query: 650 RKPRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPGDVYQLTGTSSLGS- 707
           + P   +    V+  +      EC + G        +K + +      +        GS 
Sbjct: 1   KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSL 60

Query: 708 ------------YCCVAKNVMGKAESST 723
                       Y C A+   G A S  
Sbjct: 61  VFLRPQASDEGHYQCFAETPAGVASSRV 88

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 5e-07
 Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 8/102 (7%)

Query: 548 GPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSI------YWYNKEGVVEASDKYHIM 601
           GP P       +     G +A+L C+    P              +K  +  +  ++ + 
Sbjct: 1   GP-PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVS 59

Query: 602 ADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
           +          N     D G+++C  TSS G  Q     + V
Sbjct: 60  SSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAI-ITLRV 100

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 13/98 (13%), Positives = 31/98 (31%), Gaps = 8/98 (8%)

Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRS-PTEIKIHWYRNDRKLEENKI------YRTQHDG 402
           P          +  G  A L+ +  S P      WY+     ++  +      +      
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62

Query: 403 NFYFIDLSSVSLFD-SGRWTCLAENAVGRSHCSCELSV 439
               + + ++++    G++ C   ++ G       L V
Sbjct: 63  GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 4e-06
 Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 18/96 (18%)

Query: 848 PKFLEELKAV-LSEGGAVNLECKVIGVP------QPTLKWFKDGRELKAGDIHKIISGED 900
           P+      +  ++EG    L CK   VP         +   +D   +   +    +S   
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62

Query: 901 GTCCL-----------GIYTCEAHNCMGTTSSSAAL 925
           G   L           G Y C   +  G+  +   L
Sbjct: 63  GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITL 98

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 4/101 (3%)

Query: 136 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAI 195
           P          +  G  A L+ +  S   +    D           +       +RF   
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSES---VPPVTDWAWYKITDSEDKALMNGSESRFFVS 59

Query: 196 NRDGRTELNIRRVR-RDDGGRYSVTASNESGYSTAKFELSV 235
           +  GR+EL+I  +    D G+Y    ++  G   A   L V
Sbjct: 60  SSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 4/101 (3%)

Query: 243 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAI 302
           P          +  G  A L+ +  S   +    D           +       +RF   
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSES---VPPVTDWAWYKITDSEDKALMNGSESRFFVS 59

Query: 303 NRDGRTELNIRRVR-RDDGGRYSVTASNESGYSTAKFELSV 342
           +  GR+EL+I  +    D G+Y    ++  G   A   L V
Sbjct: 60  SSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 3e-05
 Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 7/97 (7%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKV------SWFRDDQQVVESDNVKILKETL 802
           P+      S      E      +    P          +   D   +  S++   +  + 
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62

Query: 803 GVCHLKIHALEVADQA-EWKCIATNDFGQSITSCFLK 838
           G   L I  L +     +++C  T+  G       L+
Sbjct: 63  GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 99

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 5e-05
 Identities = 16/98 (16%), Positives = 26/98 (26%), Gaps = 22/98 (22%)

Query: 652 PRFVESLKAVMTDDG-LVSFECKVVGFPTPTLQWFKDNEELKPG----------DVYQLT 700
           PR      +   ++G      CK    P  T   +    + +             V    
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62

Query: 701 GTSSL-----------GSYCCVAKNVMGKAESSTQLTI 727
           G S L           G Y C   +  G  ++   L +
Sbjct: 63  GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 9e-05
 Identities = 14/99 (14%), Positives = 24/99 (24%), Gaps = 18/99 (18%)

Query: 448 PFFTKELEAILTEQG-TVSLECKVMGIPTPQLIWYKDNKKIKA----------------G 490
           P       +    +G T  L CK   +P      +      +                  
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62

Query: 491 DIFALT-ANPKDPSSLGTYTCEAVNCMGAAFSTSRVIAR 528
               L   N    +  G Y C   +  G+  +   +  R
Sbjct: 63  GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 101

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 7e-07
 Identities = 16/83 (19%), Positives = 24/83 (28%), Gaps = 20/83 (24%)

Query: 667 LVSFECKVVGFPTPTLQWFKDNEELKPGDVY----------QLTGTSSL----------G 706
                  V G P P+L+W  +   L                +      L          G
Sbjct: 17  HWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG 76

Query: 707 SYCCVAKNVMGKAESSTQLTIED 729
           +Y  +A N  G+A +S      D
Sbjct: 77  NYTLLAANPFGQASASIMAAFMD 99

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 1e-06
 Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 6/87 (6%)

Query: 768 FTVQVSISPEPKVSWFRDDQQVVESDNVKIL------KETLGVCHLKIHALEVADQAEWK 821
               V   P P + W  +   + E+  +          ET+    L+++     +   + 
Sbjct: 20  IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79

Query: 822 CIATNDFGQSITSCFLKLNVPKHYKKP 848
            +A N FGQ+  S             P
Sbjct: 80  LLAANPFGQASASIMAAFMDNPFEFNP 106

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 2e-06
 Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 12/80 (15%)

Query: 380 KIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLF-------DSGRWTCLAENAVGRSH 432
            + W  N   L E     T+         +    L        ++G +T LA N  G++ 
Sbjct: 31  SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQAS 90

Query: 433 CSCELSVLVPKAYKAPFFTK 452
            S   + +       PF   
Sbjct: 91  ASIMAAFMDN-----PFEFN 105

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 19/82 (23%), Positives = 25/82 (30%), Gaps = 16/82 (19%)

Query: 860 EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIH------KIISGEDGTCCL-------- 905
           E     +   V G P P+L+W  +G  L               +      CL        
Sbjct: 14  EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHV 73

Query: 906 --GIYTCEAHNCMGTTSSSAAL 925
             G YT  A N  G  S+S   
Sbjct: 74  NNGNYTLLAANPFGQASASIMA 95

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 15/79 (18%), Positives = 21/79 (26%), Gaps = 16/79 (20%)

Query: 464 VSLECKVMGIPTPQLIWYKDNKKIKAGDIF----------------ALTANPKDPSSLGT 507
             +   V G P P L W  +   +                       L  N     + G 
Sbjct: 18  WCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGN 77

Query: 508 YTCEAVNCMGAAFSTSRVI 526
           YT  A N  G A ++    
Sbjct: 78  YTLLAANPFGQASASIMAA 96

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 10/85 (11%)

Query: 654 FVESLKAVMTDDG-LVSFECKVV-GFPTPTLQWFKDNEELKPGDVYQLTGT--------S 703
            VE  ++     G  V+F C      P  TL W + +    P       G         S
Sbjct: 5   TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPS 64

Query: 704 SLGSYCCVAKNVMGKAESSTQLTIE 728
             G+Y C   N+    + +  L ++
Sbjct: 65  DAGTYVCTGSNMFAMDQGTATLHVQ 89

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.2 bits (103), Expect = 3e-06
 Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 7/95 (7%)

Query: 549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGY 608
           P  + ++E  +   + G      C         ++ W         S             
Sbjct: 1   PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNG------ 54

Query: 609 SIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHV 643
            + I  ++  D G + C  ++   + Q + A +HV
Sbjct: 55  ILTIRNVQPSDAGTYVCTGSNMFAMDQGT-ATLHV 88

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (100), Expect = 1e-05
 Identities = 17/99 (17%), Positives = 26/99 (26%), Gaps = 14/99 (14%)

Query: 138 FIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINR 197
            +      +V+ G                C     +        +  +    +R      
Sbjct: 5   TVEEQRSQSVRPGADVTF----------ICTAKSKSPAYTLVWTRLHNGKLPSRAM---- 50

Query: 198 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
           D    L IR V+  D G Y  T SN          L V+
Sbjct: 51  DFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 89

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (100), Expect = 1e-05
 Identities = 17/99 (17%), Positives = 26/99 (26%), Gaps = 14/99 (14%)

Query: 245 FIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINR 304
            +      +V+ G                C     +        +  +    +R      
Sbjct: 5   TVEEQRSQSVRPGADVTF----------ICTAKSKSPAYTLVWTRLHNGKLPSRAM---- 50

Query: 305 DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
           D    L IR V+  D G Y  T SN          L V+
Sbjct: 51  DFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 89

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 16/83 (19%), Positives = 23/83 (27%), Gaps = 8/83 (9%)

Query: 850 FLEELKAV-LSEGGAVNLECKVI-GVPQPTLKWFKDGRELKAGDIHK-----IISGEDGT 902
            +EE ++  +  G  V   C      P  TL W +                  I     +
Sbjct: 5   TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPS 64

Query: 903 CCLGIYTCEAHNCMGTTSSSAAL 925
              G Y C   N       +A L
Sbjct: 65  DA-GTYVCTGSNMFAMDQGTATL 86

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.1 bits (95), Expect = 4e-05
 Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 7/89 (7%)

Query: 751 FIEGLKSCQATVNEEFKFTVQV-SISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKI 809
            +E  +S       +  F     S SP   + W R     + S  +           L I
Sbjct: 5   TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM------DFNGILTI 58

Query: 810 HALEVADQAEWKCIATNDFGQSITSCFLK 838
             ++ +D   + C  +N F     +  L 
Sbjct: 59  RNVQPSDAGTYVCTGSNMFAMDQGTATLH 87

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.1 bits (95), Expect = 4e-05
 Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 6/89 (6%)

Query: 352 FIRRLHDIAVKVGTRARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLS 410
            +      +V+ G     +   +S      + W R       ++            + + 
Sbjct: 5   TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNG-----ILTIR 59

Query: 411 SVSLFDSGRWTCLAENAVGRSHCSCELSV 439
           +V   D+G + C   N       +  L V
Sbjct: 60  NVQPSDAGTYVCTGSNMFAMDQGTATLHV 88

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.7 bits (94), Expect = 6e-05
 Identities = 17/84 (20%), Positives = 25/84 (29%), Gaps = 6/84 (7%)

Query: 448 PFFTKELEAILTEQG-TVSLECKVM-GIPTPQLIWYKDNKKIKAGDIF----ALTANPKD 501
               +E  +     G  V+  C      P   L+W + +              LT     
Sbjct: 3   MVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQ 62

Query: 502 PSSLGTYTCEAVNCMGAAFSTSRV 525
           PS  GTY C   N       T+ +
Sbjct: 63  PSDAGTYVCTGSNMFAMDQGTATL 86

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 3e-06
 Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 6/98 (6%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVK----ILKETLGV 804
              I  L+S   T +  +     V  +P+P + WF +   + ES  +     +   T   
Sbjct: 4   APTITFLES--PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH 61

Query: 805 CHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
             L++      +  ++  IA N++G+            
Sbjct: 62  GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW 99

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 3e-05
 Identities = 19/96 (19%), Positives = 21/96 (21%), Gaps = 20/96 (20%)

Query: 652 PRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELK--------PGDVYQLTGTS 703
           P                     V G P P LQWF +   L                    
Sbjct: 5   PTITFLESPTSDHH--WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHG 62

Query: 704 SL----------GSYCCVAKNVMGKAESSTQLTIED 729
            L          G Y  +AKN  GK E         
Sbjct: 63  CLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 15/86 (17%)

Query: 864 VNLECKVIGVPQPTLKWFKDGRELKAGDIHK----IISGEDGTCCLGI----------YT 909
             +   V G P+P L+WF +G  L           + +  +   CL +          YT
Sbjct: 19  WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT 78

Query: 910 CEAHNCMGTTSSSAALLGFEDKSQIE 935
             A N  G      +   F     I+
Sbjct: 79  LIAKNEYGKDEKQISAH-FMGWPGID 103

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 5e-04
 Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 380 KIHWYRNDRKLEENKIYRTQHDGNFY-----FIDLSSVSLFDSGRWTCLAENAVGRSHCS 434
            + W+ N   L E+K   T+     +      + L + +  ++G +T +A+N  G+    
Sbjct: 32  ALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ 91

Query: 435 CELSVLVP 442
                +  
Sbjct: 92  ISAHFMGW 99

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 5e-06
 Identities = 13/99 (13%), Positives = 26/99 (26%), Gaps = 8/99 (8%)

Query: 349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWY-------RNDRKLEENKIYRTQHD 401
            P  I          G + ++   IRS        +        +           +  +
Sbjct: 6   GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 65

Query: 402 GNFYFIDLSSVSL-FDSGRWTCLAENAVGRSHCSCELSV 439
           G    + +S++        + C A N+ G       L  
Sbjct: 66  GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 104

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 5e-06
 Identities = 17/111 (15%), Positives = 27/111 (24%), Gaps = 4/111 (3%)

Query: 135 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRA 194
            P  I          G + ++   IRS                          +     +
Sbjct: 6   GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESG---TSGRYTVETIS 62

Query: 195 INRDGRTELNIRRVRRD-DGGRYSVTASNESGYSTAKFELSVESQVPDAPA 244
                 + L I  + R      Y+ TA N  G  T    L  +      P+
Sbjct: 63  TEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPS 113

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 5e-06
 Identities = 17/111 (15%), Positives = 27/111 (24%), Gaps = 4/111 (3%)

Query: 242 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRA 301
            P  I          G + ++   IRS                          +     +
Sbjct: 6   GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESG---TSGRYTVETIS 62

Query: 302 INRDGRTELNIRRVRRD-DGGRYSVTASNESGYSTAKFELSVESQVPDAPA 351
                 + L I  + R      Y+ TA N  G  T    L  +      P+
Sbjct: 63  TEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPS 113

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 2e-05
 Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 7/99 (7%)

Query: 747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILK------E 800
             P  I   ++  A   E+ +    +  +P P    +   + V+ES             E
Sbjct: 5   NGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 64

Query: 801 TLGVCHLKIHALEVA-DQAEWKCIATNDFGQSITSCFLK 838
              +  L I  +  A  Q  + C A N FG       LK
Sbjct: 65  EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 103

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 6/95 (6%)

Query: 550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS 609
            P  I   +   A  G    ++C +   P P  I W  KE V+E+        + +    
Sbjct: 6   GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 65

Query: 610 IEINYLE------AVDDGEWKCVATSSSGVKQFSA 638
             I+ L       A     + C A +S G      
Sbjct: 66  GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEII 100

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 20/113 (17%), Positives = 33/113 (29%), Gaps = 22/113 (19%)

Query: 437 LSVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWY--------------- 481
           L+V  P     P  +              ++C +   P P  I +               
Sbjct: 2   LTVNGP-----PIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRY 56

Query: 482 -KDNKKIKAGDIFALT-ANPKDPSSLGTYTCEAVNCMGAAFSTSRVIARGQQS 532
             +    + G I  LT +N         Y C A N  G+     R+  +G + 
Sbjct: 57  TVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEM 109

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 6e-06
 Identities = 20/95 (21%), Positives = 30/95 (31%), Gaps = 19/95 (20%)

Query: 652 PRFVESLKAVMTDDGLVSFECKVVGFPTPTLQWFKDNEELKPGDVYQ-------LTGTSS 704
           PR V   +  +        E  V G P PTL W  + + L+   +               
Sbjct: 6   PRVVSLEEPELRL--EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGC 63

Query: 705 L----------GSYCCVAKNVMGKAESSTQLTIED 729
           L          G+Y  +AKN +G A  +       
Sbjct: 64  LLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLK 98

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 6/97 (6%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKE---TLGVC 805
           P+ +  L+  +  +    +F V    +P P + W  + Q + ES  + +       +   
Sbjct: 6   PRVVS-LEEPELRLEHCIEFVV--RGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEG 62

Query: 806 HLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVP 842
            L  +     +   +  IA N  G +  +        
Sbjct: 63  CLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 99

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 23/102 (22%), Positives = 32/102 (31%), Gaps = 20/102 (19%)

Query: 438 SVLVPKAYKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIKAGDIF---- 493
           +V  P     P      E  L  +    +E  V G P P L W  + + ++   I     
Sbjct: 1   TVYYP-----PRVVSLEEPELRLE--HCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEY 53

Query: 494 ---------ALTANPKDPSSLGTYTCEAVNCMGAAFSTSRVI 526
                     L  N     + G YT  A N +G A  T    
Sbjct: 54  YQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH 95

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 13/73 (17%)

Query: 866 LECKVIGVPQPTLKWFKDGRELKAGDIHKIIS---GEDGTCCL----------GIYTCEA 912
           +E  V G P PTL W  +G+ L+   I  +     GE    CL          G YT  A
Sbjct: 22  IEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIA 81

Query: 913 HNCMGTTSSSAAL 925
            N +GT + +   
Sbjct: 82  KNPLGTANQTING 94

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 12/95 (12%), Positives = 34/95 (35%), Gaps = 2/95 (2%)

Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDL 409
           P  +  L +  +++      +V    P  +         +  +        +G      L
Sbjct: 5   PPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCL 64

Query: 410 --SSVSLFDSGRWTCLAENAVGRSHCSCELSVLVP 442
             +  + +++G +T +A+N +G ++ +     L  
Sbjct: 65  LFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 99

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 6e-06
 Identities = 11/94 (11%), Positives = 29/94 (30%), Gaps = 10/94 (10%)

Query: 558 ENVKAKIGTSAILECQVLVPP-------WPRSIYWYNKEGVVEASDKYHIMADGLGGYSI 610
           + +   +  +        VP            +           S   + +       S+
Sbjct: 3   QQIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62

Query: 611 EINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVL 644
            I  L + D+ E++  + + +   +F    ++VL
Sbjct: 63  TIYNLTSSDEDEYEMESPNITDTMKFF---LYVL 93

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 19/93 (20%), Positives = 26/93 (27%), Gaps = 5/93 (5%)

Query: 144 DIAVKVGTRARLLVEIRSP-TEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE 202
            I   V       V    P  E+  +   +               F NR       G   
Sbjct: 4   QIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG--S 61

Query: 203 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 235
           L I  +   D   Y + + N +   T KF L V
Sbjct: 62  LTIYNLTSSDEDEYEMESPNITD--TMKFFLYV 92

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 19/93 (20%), Positives = 26/93 (27%), Gaps = 5/93 (5%)

Query: 251 DIAVKVGTRARLLVEIRSP-TEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAINRDGRTE 309
            I   V       V    P  E+  +   +               F NR       G   
Sbjct: 4   QIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG--S 61

Query: 310 LNIRRVRRDDGGRYSVTASNESGYSTAKFELSV 342
           L I  +   D   Y + + N +   T KF L V
Sbjct: 62  LTIYNLTSSDEDEYEMESPNITD--TMKFFLYV 92

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (102), Expect = 9e-06
 Identities = 19/106 (17%), Positives = 30/106 (28%), Gaps = 8/106 (7%)

Query: 37  TYTCEAVNCMGAAFSTSRVIARGQQSFLDNDDVPFNRAQGDHPIFGNRFRAINR---DGR 93
              C       A               +       ++     P +  R   +     +G+
Sbjct: 21  ELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGK 80

Query: 94  TELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFI 139
             L I+ VR  D G Y+    + S    A  EL VE      P + 
Sbjct: 81  VALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE-----DPFYW 121

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.5 bits (101), Expect = 1e-05
 Identities = 15/116 (12%), Positives = 32/116 (27%), Gaps = 22/116 (18%)

Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGL------------ 605
             ++A +G  A L C++        +               +                  
Sbjct: 10  HPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRT 69

Query: 606 ---------GGYSIEINYLEAVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKP 652
                    G  ++ I  +   D+G + C     S  ++ +A  + V  P  +  P
Sbjct: 70  ELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEE-AAVELKVEDPFYWINP 124

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 17/133 (12%), Positives = 35/133 (26%), Gaps = 14/133 (10%)

Query: 321 GRYSVTASNES-----GYSTAKFELSVESQVPDAPAFIRRLHDIAVKVGTRARLLVEIRS 375
           G++ V           G   A+    +          +               L    + 
Sbjct: 1   GQFRVIGPGHPIRALVG-DEAELPCRISPGKNATGMEVGWYRS---PFSRVVHLYRNGKD 56

Query: 376 PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC 435
               +   YR   +     + +         + + +V   D G +TC   +   +   + 
Sbjct: 57  QDAEQAPEYRGRTE-----LLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAV 111

Query: 436 ELSVLVPKAYKAP 448
           EL V  P  +  P
Sbjct: 112 ELKVEDPFYWINP 124

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 24/117 (20%), Positives = 35/117 (29%), Gaps = 18/117 (15%)

Query: 143 HDIAVKVGTRARLLVEIRSPTEI----------KCQFDLNNTIPFSFRAQGDHPIFGNRF 192
           H I   VG  A L   I                     ++       +     P +  R 
Sbjct: 10  HPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRT 69

Query: 193 RAINR---DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFI 246
             +     +G+  L I+ VR  D G Y+    + S    A  EL VE      P + 
Sbjct: 70  ELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE-----DPFYW 121

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 24/117 (20%), Positives = 35/117 (29%), Gaps = 18/117 (15%)

Query: 250 HDIAVKVGTRARLLVEIRSPTEI----------KCQFDLNNTIPFSFRAQGDHPIFGNRF 299
           H I   VG  A L   I                     ++       +     P +  R 
Sbjct: 10  HPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRT 69

Query: 300 RAINR---DGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVESQVPDAPAFI 353
             +     +G+  L I+ VR  D G Y+    + S    A  EL VE      P + 
Sbjct: 70  ELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE-----DPFYW 121

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (100), Expect = 1e-05
 Identities = 12/101 (11%), Positives = 26/101 (25%), Gaps = 2/101 (1%)

Query: 136 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAI 195
            +      D+ V      +L       +  + ++        +              R  
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 196 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 236
                  +    V R D G Y+   S E G +  +  + + 
Sbjct: 62  FSSS--GITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (100), Expect = 1e-05
 Identities = 12/101 (11%), Positives = 26/101 (25%), Gaps = 2/101 (1%)

Query: 243 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDHPIFGNRFRAI 302
            +      D+ V      +L       +  + ++        +              R  
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 303 NRDGRTELNIRRVRRDDGGRYSVTASNESGYSTAKFELSVE 343
                  +    V R D G Y+   S E G +  +  + + 
Sbjct: 62  FSSS--GITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (86), Expect = 8e-04
 Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 7/100 (7%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI-------LKET 801
                     Q   NE  K T   S    P+V W                       + T
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 802 LGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
                +   ++   D  E+ C+ + + GQ+     + L V
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTV 101

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 8/100 (8%)

Query: 350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYF--- 406
            +      D+ V      +L       +  ++ W            Y +Q    +     
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 407 -----IDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV 441
                I  SSV+  D+G +TC+     G+++    + + V
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTV 101

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 4/104 (3%)

Query: 136 PAFIRRLHD-IAVKVGTRARLLVEIRS--PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRF 192
           P  +   ++ + V +G++ +L+  +          +++ +           D+    N  
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 193 RAINRDGRTELNIRRVRR-DDGGRYSVTASNESGYSTAKFELSV 235
                   T LNI  +        ++  A N  G   A  +L  
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 4/104 (3%)

Query: 243 PAFIRRLHD-IAVKVGTRARLLVEIRS--PTEIKCQFDLNNTIPFSFRAQGDHPIFGNRF 299
           P  +   ++ + V +G++ +L+  +          +++ +           D+    N  
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 300 RAINRDGRTELNIRRVRR-DDGGRYSVTASNESGYSTAKFELSV 342
                   T LNI  +        ++  A N  G   A  +L  
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 3e-05
 Identities = 15/106 (14%), Positives = 30/106 (28%), Gaps = 13/106 (12%)

Query: 749 PKFIEGL-KSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI---------- 797
           P  +    ++ +  +  + +    V+        W  +   + E D V            
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 798 -LKETLGVCHLKIHALEVADQ-AEWKCIATNDFGQSITSCFLKLNV 841
             + +  +  L I  +E       + C A N  G       L   V
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV 107

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 3e-05
 Identities = 15/103 (14%), Positives = 24/103 (23%), Gaps = 24/103 (23%)

Query: 847 KPKFLEELKAVLS--EGGAVNLECKVIGVPQPTLKWFKDGRELKAGDIHKIISGEDGTCC 904
           +P  +      +    G  + L C V G       W  +G  +   D             
Sbjct: 1   RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENP 60

Query: 905 L----------------------GIYTCEAHNCMGTTSSSAAL 925
                                    +TC A N  G  ++   L
Sbjct: 61  ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 103

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 17/103 (16%), Positives = 26/103 (25%), Gaps = 28/103 (27%)

Query: 651 KPRFVESLKAVMT--DDGLVSFECKVVGFPTPTLQWFKDNEELKPGD------------- 695
           +P  V      M       +   C V G  +    W  +   +   D             
Sbjct: 1   RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENP 60

Query: 696 --VYQLTGTSSL-----------GSYCCVAKNVMGKAESSTQL 725
               + T  + L             + C AKN  G   +  QL
Sbjct: 61  ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 103

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 14/106 (13%)

Query: 350 PAFIRRLHD-IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFID 408
           P  +   ++ + V +G++ +L+  +        +W  N   ++E+     +   +     
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 409 LSSVSLFDS-------------GRWTCLAENAVGRSHCSCELSVLV 441
               S   +               +TC A+N  G      +L   V
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV 107

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (96), Expect = 3e-05
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 2/88 (2%)

Query: 558 ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEAS--DKYHIMADGLGGYSIEINYL 615
              +  +G S    CQV      + I W++  G   +    +  ++ +     ++ I   
Sbjct: 8   SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNA 67

Query: 616 EAVDDGEWKCVATSSSGVKQFSAAYVHV 643
              D G +KCV T+  G +  +   V +
Sbjct: 68  NIDDAGIYKCVVTAEDGTQSEATVNVKI 95

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 6e-05
 Identities = 17/96 (17%), Positives = 23/96 (23%), Gaps = 7/96 (7%)

Query: 347 PDAPAFIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFY 405
              PA       +    G    L            +HW         +            
Sbjct: 4   RRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLL 63

Query: 406 FIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV 441
              L SV L DSG ++C           +  L V V
Sbjct: 64  ---LRSVQLHDSGNYSCYRAGRPAG---TVHLLVDV 93

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 9/99 (9%), Positives = 26/99 (26%), Gaps = 6/99 (6%)

Query: 743 LTNNKAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETL 802
           L   + P          +   +    T       +     +   +    S   +      
Sbjct: 1   LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMG- 59

Query: 803 GVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNV 841
               L + ++++ D   + C        ++    L ++V
Sbjct: 60  --RRLLLRSVQLHDSGNYSCYRAGRPAGTVH---LLVDV 93

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.004
 Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 5/89 (5%)

Query: 544 LMPPGPAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMAD 603
           L P    P        + +  G S  L C  + P    +++W  ++    +         
Sbjct: 1   LAPRRC-PAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAG-- 57

Query: 604 GLGGYSIEINYLEAVDDGEWKCVATSSSG 632
              G  + +  ++  D G + C       
Sbjct: 58  --MGRRLLLRSVQLHDSGNYSCYRAGRPA 84

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 6e-05
 Identities = 9/102 (8%), Positives = 25/102 (24%), Gaps = 8/102 (7%)

Query: 345 QVPDAPAFIRRLHDIAVKVGTRARLLVEIRS---PTEIKIHWYRNDRKLEENKIYRTQHD 401
             P               VG +  L  ++       ++ +   R +++L+         +
Sbjct: 2   WTP--ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAE 59

Query: 402 GNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVLVPK 443
                            +++C  E  +         +   P 
Sbjct: 60  VTTTV---LVRRDHHGAQFSCRTELDLRPQGLELFENTSAPY 98

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 10/99 (10%), Positives = 22/99 (22%), Gaps = 7/99 (7%)

Query: 749 PKFIEGLKSCQATVNEEFKFTVQVSIS---PEPKVSWFRDDQQVVESDNVKILKETLGVC 805
            +           V ++     QV       +  V   R ++++                
Sbjct: 5   ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA----VGEPAEV 60

Query: 806 HLKIHALEVADQAEWKCIATNDFGQSITSCFLKLNVPKH 844
              +        A++ C    D        F   + P  
Sbjct: 61  TTTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSAPYQ 99

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 7e-04
 Identities = 13/99 (13%), Positives = 24/99 (24%), Gaps = 15/99 (15%)

Query: 649 YRKPRFVE--SLKAVMTDDGLVSFECKVVG---FPTPTLQWFKDNEELKPGDVYQLTGTS 703
           Y  P  VE   L +       ++  C+V G       T+   +  +ELK           
Sbjct: 1   YWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEV 60

Query: 704 SL----------GSYCCVAKNVMGKAESSTQLTIEDIRN 732
           +             + C  +  +                
Sbjct: 61  TTTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSAPYQ 99

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 9e-05
 Identities = 14/96 (14%), Positives = 26/96 (27%), Gaps = 7/96 (7%)

Query: 561 KAKIGTSAILECQVL----VPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLE 616
           K  +     L C  +              + K+      D  H          + +  + 
Sbjct: 10  KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVK---DRLIVMNVA 66

Query: 617 AVDDGEWKCVATSSSGVKQFSAAYVHVLMPKNYRKP 652
               G + C A+ +   KQ+    V   +     KP
Sbjct: 67  EKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKP 102

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 10/84 (11%), Positives = 26/84 (30%), Gaps = 1/84 (1%)

Query: 358 DIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFD 416
            +             +  +  +  I WY++D K   +    ++   +   +      + D
Sbjct: 11  ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVED 70

Query: 417 SGRWTCLAENAVGRSHCSCELSVL 440
           SG + C+  N+            +
Sbjct: 71  SGHYYCVVRNSSYCLRIKISAKFV 94

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 10/84 (11%), Positives = 24/84 (28%), Gaps = 10/84 (11%)

Query: 361 VKVGTRARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGR 419
            + G    L          +K+ +++N +  + ++                  +   SG 
Sbjct: 12  FQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPNFSI--------PQANHSHSGD 63

Query: 420 WTCLAENAVGR-SHCSCELSVLVP 442
           + C         S     ++V  P
Sbjct: 64  YHCTGNIGYTLYSSKPVTITVQAP 87

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 12/77 (15%), Positives = 21/77 (27%), Gaps = 10/77 (12%)

Query: 856 AVLSEGGAVNLECKVI-GVPQPTLKWFKDGRELKAGDIHKI-----ISGEDGTCCLGIYT 909
               EG  + L C      P   + +F++G+  K             +          Y 
Sbjct: 10  LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPNFSIPQANHSHSGD----YH 65

Query: 910 CEAHNCMGTTSSSAALL 926
           C  +      SS    +
Sbjct: 66  CTGNIGYTLYSSKPVTI 82

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 2/78 (2%)

Query: 851 LEELKAVLSEGGAVNLECKVIGV-PQPTLKWFKDGRELKAGDIHKIISGEDGTCC-LGIY 908
           L+  + V  E   ++L C          + + ++G++ K    +        T    G Y
Sbjct: 7   LQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSY 66

Query: 909 TCEAHNCMGTTSSSAALL 926
            C         SS    +
Sbjct: 67  FCRGLVGSKNVSSETVNI 84

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 6/79 (7%), Positives = 22/79 (27%), Gaps = 11/79 (13%)

Query: 764 EEFKFTVQVS-ISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKC 822
           +           +   KV++ ++ +      +              I    + D   + C
Sbjct: 18  DPIHLRCHSWKNTALHKVTYLQNGKDRKYFHH---------NSDFHIPKATLKDSGSYFC 68

Query: 823 IATNDFGQSITSCFLKLNV 841
                   +++S  + + +
Sbjct: 69  RGLVGSK-NVSSETVNITI 86

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 3/83 (3%)

Query: 361 VKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRW 420
            K G  A L    +S        ++N     E+  Y      N       ++S  DSG +
Sbjct: 9   FKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLI---FNLSEGDSGVY 65

Query: 421 TCLAENAVGRSHCSCELSVLVPK 443
            CL+E  V        ++  V +
Sbjct: 66  QCLSEERVKNKTVFQVVAKHVLE 88

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 13/92 (14%), Positives = 32/92 (34%), Gaps = 8/92 (8%)

Query: 358 DIAVKVGTRARLLVEIRSPTEIKIHWYRNDR--------KLEENKIYRTQHDGNFYFIDL 409
           ++ +      +L       +  ++ W  +            +    Y  +       I  
Sbjct: 13  EVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITF 72

Query: 410 SSVSLFDSGRWTCLAENAVGRSHCSCELSVLV 441
            SV+  D+G +TC+     G S+   ++ ++V
Sbjct: 73  KSVTREDTGTYTCMVSEEGGNSYGEVKVKLIV 104

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.004
 Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 7/90 (7%)

Query: 759 QATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKIL-------KETLGVCHLKIHA 811
           +   N   K +   S    P+V W  D                    + T     +   +
Sbjct: 15  RIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKS 74

Query: 812 LEVADQAEWKCIATNDFGQSITSCFLKLNV 841
           +   D   + C+ + + G S     +KL V
Sbjct: 75  VTREDTGTYTCMVSEEGGNSYGEVKVKLIV 104

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 14/102 (13%), Positives = 27/102 (26%), Gaps = 7/102 (6%)

Query: 350 PAFIRRLHD-IAVKVGTRARLLVE-IRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFI 407
             F     D + +  G               +   W  N+         R         +
Sbjct: 4   QEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNL 63

Query: 408 DLSSVSLFDSGRWTCLAENAVGRSHCSC-----ELSVLVPKA 444
            ++     D G ++C A + +     S      +LS+    A
Sbjct: 64  YIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDA 105

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 18/82 (21%), Positives = 24/82 (29%), Gaps = 1/82 (1%)

Query: 551 PIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSI 610
               +E + VK   G   +  C         S  W   E                 G ++
Sbjct: 5   EFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG-NL 63

Query: 611 EINYLEAVDDGEWKCVATSSSG 632
            I   EA D G + C ATS   
Sbjct: 64  YIAKTEASDLGNYSCFATSHID 85

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.004
 Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 14/95 (14%)

Query: 557 VENVKAKIGTSAILECQVLVPPWPRSIYW-------------YNKEGVVEASDKYHIMAD 603
           V +V  ++   A L C   V     +                 + +  +    K   + D
Sbjct: 1   VIHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD 60

Query: 604 GLGGYSIEINYLEAVDDGEWKC-VATSSSGVKQFS 637
                SI I  L   D+G ++C V        +  
Sbjct: 61  ITNNLSIVILALRPSDEGTYECVVLKYEKDAFKRE 95

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 11/89 (12%), Positives = 27/89 (30%), Gaps = 4/89 (4%)

Query: 355 RLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSL 414
           ++ +  VK      L              + +       ++  +Q++          +  
Sbjct: 9   QVTNTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDP---IKR 65

Query: 415 FDSGRWTCLAENAVGRSH-CSCELSVLVP 442
            D+G + C   N V      S +L ++  
Sbjct: 66  EDAGEYQCEISNPVSVRRSNSIKLDIIFD 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1075
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.74
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.72
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.68
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.67
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.67
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.63
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.62
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.61
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.61
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.59
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.58
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.58
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.58
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.56
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.55
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.53
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.51
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.5
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.5
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.5
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.49
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.49
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.49
d2avga1	110	Cardiac myosin binding protein C, different domain	99.48
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.47
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.47
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.47
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.46
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.46
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.46
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.45
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.45
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.45
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.44
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.44
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.44
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.44
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.44
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.44
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.43
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.43
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.43
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.42
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.42
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.41
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.41
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.39
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.37
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.37
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.37
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.36
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.36
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.36
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.36
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.35
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.35
d2avga1	110	Cardiac myosin binding protein C, different domain	99.35
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.35
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.35
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.34
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.34
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.34
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.33
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.33
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.33
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.33
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.33
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.33
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.32
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.31
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.31
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.3
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.3
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.3
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.29
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.28
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.27
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.26
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.25
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.25
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.25
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.24
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.24
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.23
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.23
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.22
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.22
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.21
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.21
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.2
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.2
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.19
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.17
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.15
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.14
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.13
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.13
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.12
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.11
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.1
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.07
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.07
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.06
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.06
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.03
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.03
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.03
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.01
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.99
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.99
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.95
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.93
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.91
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.78
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.77
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.76
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.66
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.61
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.49
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.41
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.29
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.27
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.26
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.22
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.21
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.15
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.11
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.09
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.09
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.07
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.06
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.05
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.02
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.01
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.01
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.0
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	97.99
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.98
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	97.98
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	97.97
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	97.97
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	97.96
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	97.96
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	97.95
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.94
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.94
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	97.94
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	97.94
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.93
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.93
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	97.93
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	97.92
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.91
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.91
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.91
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.91
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.91
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.89
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.89
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.88
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.88
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	97.88
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	97.87
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.87
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	97.87
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	97.87
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	97.87
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.87
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	97.86
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.86
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	97.86
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.85
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	97.84
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.83
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	97.81
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.81
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.81
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	97.8
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.8
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.8
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	97.8
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	97.8
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.8
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.79
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.79
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.79
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.77
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	97.77
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	97.77
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.76
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.76
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.75
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	97.74
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.74
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.74
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.74
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.73
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.73
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	97.73
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.72
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.72
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.71
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.71
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.71
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.7
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.7
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.7
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.7
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.7
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	97.7
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.69
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.69
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.69
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.69
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.68
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.68
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.67
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	97.66
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.65
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.65
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.62
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.62
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.62
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.62
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.61
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	97.6
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.6
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.6
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.6
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.6
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.59
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.59
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.59
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.58
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.57
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.57
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.55
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.55
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.54
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.54
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.54
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	97.54
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.53
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.52
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.52
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.52
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.52
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	97.52
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.52
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.51
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.51
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.49
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.48
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.48
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.48
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.46
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.46
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.46
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.46
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.45
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.45
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.44
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.43
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.43
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.43
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.43
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.42
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.42
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.41
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.41
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.41
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.41
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.4
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.39
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.38
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.38
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.37
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.37
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.36
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.36
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.36
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.35
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.35
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.34
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.34
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.32
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.31
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.31
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.31
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.3
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.3
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.3
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.3
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.28
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.28
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.27
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.27
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.26
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.26
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.25
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.24
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.24
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.23
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.23
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.21
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.21
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.2
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.2
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.2
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.19
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.18
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.18
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.17
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.17
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.16
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.16
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.13
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.13
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.11
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.11
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.1
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.09
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.07
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.07
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.07
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.06
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.05
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.04
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.04
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.04
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.03
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.02
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.02
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.01
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.01
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.0
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	96.98
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	96.98
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.98
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.97
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.97
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	96.96
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.96
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	96.96
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	96.96
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	96.96
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	96.96
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	96.95
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	96.94
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	96.94
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.94
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.94
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	96.93
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.92
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.92
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	96.92
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	96.91
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	96.9
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	96.9
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	96.9
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	96.89
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	96.89
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	96.89
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	96.88
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	96.88
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.88
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	96.86
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.85
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	96.84
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.83
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	96.82
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	96.82
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.82
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	96.81
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.81
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	96.81
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	96.81
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	96.8
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	96.8
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.8
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	96.79
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	96.79
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	96.79
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	96.77
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.77
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	96.77
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	96.76
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	96.76
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	96.76
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	96.76
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	96.76
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	96.75
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.74
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	96.74
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.74
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	96.74
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.74
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	96.73
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.73
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	96.73
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	96.72
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	96.72
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	96.71
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	96.7
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	96.7
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	96.69
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.69
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.69
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	96.68
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	96.67
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	96.66
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	96.65
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.65
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	96.64
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.64
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	96.64
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	96.64
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	96.63
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.62
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	96.62
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	96.62
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.61
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.61
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	96.6
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.6
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	96.59
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.59
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.59
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.57
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	96.57
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	96.56
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.56
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	96.53
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	96.53
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	96.53
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	96.52
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	96.52
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.52
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.52
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	96.51
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	96.51
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	96.51
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	96.51
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	96.51
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.5
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	96.5
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.5
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	96.5
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.49
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	96.49
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	96.49
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	96.48
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	96.48
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	96.48
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	96.45
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.43
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	96.42
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	96.41
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	96.41
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	96.41
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	96.39
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	96.37
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	96.37
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.37
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	96.36
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	96.35
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	96.35
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.35
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	96.35
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	96.35
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.34
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	96.32
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	96.32
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	96.31
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	96.3
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	96.3
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	96.28
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	96.28
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	96.28
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	96.27
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.27
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	96.25
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	96.25
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	96.24
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	96.24
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.24
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.21
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.2
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.19
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	96.17
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.15
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.13
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	96.12
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	96.11
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	96.11
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	96.11
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	96.11
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	96.1

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.74  E-value=7.3e-18  Score=145.12  Aligned_cols=95  Identities=25%  Similarity=0.419  Sum_probs=89.0

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      ++|.|+..+++..+.+|+.+.|.|.+.|.|.|.++|||||.+|..+.++.+.....+.+.|.|.+++.+|+|.|+|.|.|
T Consensus         3 eaP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N   82 (98)
T d1g1ca_           3 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   82 (98)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cCCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEE
Confidence            58899999999999999999999999999999999999999999988888777777889999999999999999999999


Q ss_pred             CCceEEEEEEEEEEe
Q psy16863        827 DFGQSITSCFLKLNV  841 (1075)
Q Consensus       827 ~~G~~~~s~~l~V~~  841 (1075)
                      .+|.+.+++.|.|+.
T Consensus        83 ~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          83 IAGETSSHAFLLVQA   97 (98)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEEEEEE
Confidence            999999999998873

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.72  E-value=1.7e-17  Score=144.02  Aligned_cols=94  Identities=28%  Similarity=0.500  Sum_probs=88.7

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .+|.|...+++..+..|+++.|.|.+.|.|.|.|+|+|||.+|..+.++.+.....+.++|.|.+++.+|+|.|+|.|.|
T Consensus         7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   86 (102)
T d1fhga_           7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN   86 (102)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEE
Confidence            47899999999999999999999999999999999999999999999999887777788999999999999999999999


Q ss_pred             CCceEEEEEEEEEE
Q psy16863        827 DFGQSITSCFLKLN  840 (1075)
Q Consensus       827 ~~G~~~~s~~l~V~  840 (1075)
                      .+|.+.+++.|.|+
T Consensus        87 ~~G~~~~~~~L~V~  100 (102)
T d1fhga_          87 SLGEATCTAELLVE  100 (102)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEEE
Confidence            99999999999886

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.68  E-value=6.1e-17  Score=135.75  Aligned_cols=87  Identities=23%  Similarity=0.555  Sum_probs=80.4

Q ss_pred             CeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCC
Q psy16863        749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDF  828 (1075)
Q Consensus       749 p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~  828 (1075)
                      |.|+..+.+..+..|+++.|.|.+.|.|.|.|+|+|||.+|..+.++.+.   .+  .|.|.+++.+|+|.|+|.|.|.+
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~---~~--~L~i~~v~~~D~G~Y~C~a~N~~   76 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS---GG--ELRFSKLVLEDSGMYQCVAENKH   76 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE---TT--EEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeee---ee--eEEEEeecccCCEEEEEEEEeCC
Confidence            68999999999999999999999999999999999999999988887763   22  69999999999999999999999


Q ss_pred             ceEEEEEEEEEE
Q psy16863        829 GQSITSCFLKLN  840 (1075)
Q Consensus       829 G~~~~s~~l~V~  840 (1075)
                      |.+.+++.|.|+
T Consensus        77 G~~~~~~~l~V~   88 (89)
T d1cs6a4          77 GTVYASAELTVQ   88 (89)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEE
Confidence            999999999886

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.4e-16  Score=137.79  Aligned_cols=94  Identities=16%  Similarity=0.220  Sum_probs=85.8

Q ss_pred             CeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCC
Q psy16863        749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDF  828 (1075)
Q Consensus       749 p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~  828 (1075)
                      |.|+..+++..+..|+++.|+|.+.|.|.|.++|+|||++|..+.++.+.... +.+.|.|.+++.+|+|.|+|.|.|.+
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~N~~   79 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSE-NGSKLTILAARQEHCGCYTLLVENKL   79 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECS-SEEEEEETTCCTTTCEEEEEEEECSS
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEec-ceeEEEEeeCCcccCEEEEEEEEECC
Confidence            56777788899999999999999999999999999999999999999886644 56789999999999999999999999


Q ss_pred             ceEEEEEEEEEEecC
Q psy16863        829 GQSITSCFLKLNVPK  843 (1075)
Q Consensus       829 G~~~~s~~l~V~~~~  843 (1075)
                      |.++.++.|.|..+|
T Consensus        80 G~~~~~~~l~V~~~P   94 (101)
T d2cqva1          80 GSRQAQVNLTVVDKP   94 (101)
T ss_dssp             CEEECCEEEEEECSC
T ss_pred             CEEEEEEEEEEEecC
Confidence            999999999998765

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.67  E-value=8.7e-17  Score=136.70  Aligned_cols=92  Identities=13%  Similarity=0.237  Sum_probs=84.2

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeC
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND  827 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~  827 (1075)
                      +|.|+..++++.+..|+++.|.|.+.|.|.|.++|+|||..+..+.++.+... .+.+.|.|.+++.+|+|.|+|.|+|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~c~a~N~   80 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAK-SSTTSIFFPSAKRADSGNYKLKVKNE   80 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEE-TTEEEEECTTBCGGGCEEEEEEEEET
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeeccc-ccceeeccccccccccEEEEEEEEEC
Confidence            68899999999999999999999999999999999999999998888877654 45779999999999999999999999


Q ss_pred             CceEEEEEEEEEE
Q psy16863        828 FGQSITSCFLKLN  840 (1075)
Q Consensus       828 ~G~~~~s~~l~V~  840 (1075)
                      .|.+++++.|.|+
T Consensus        81 ~G~~~~~~~l~V~   93 (93)
T d1wiua_          81 LGEDEAIFEVIVQ   93 (93)
T ss_dssp             TEEEEEEEEEEEC
T ss_pred             CCEEEEEEEEEEC
Confidence            9999888888773

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.67  E-value=6.9e-17  Score=138.58  Aligned_cols=93  Identities=23%  Similarity=0.339  Sum_probs=84.9

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeC
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND  827 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~  827 (1075)
                      .|.|+..+++..+.+|+++.|.|.+.|.|.|.|+|+|||++|..+.++.+... .+.+.|.|.+++.+|+|.|+|.|.|.
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~   79 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYN-GNDYGLTINRVKGDDKGEYTVRAKNS   79 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCS-TTEEEEEESCCCSGGGSCEEEEEEET
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEec-CCeeEEEeCCCceecCEEEEEEEEEC
Confidence            37899999999999999999999999999999999999999998888877543 45788999999999999999999999


Q ss_pred             CceEEEEEEEEEEe
Q psy16863        828 FGQSITSCFLKLNV  841 (1075)
Q Consensus       828 ~G~~~~s~~l~V~~  841 (1075)
                      +|.+..++.|.|..
T Consensus        80 ~G~~~~~~~l~V~~   93 (97)
T d1koaa1          80 YGTKEEIVFLNVTR   93 (97)
T ss_dssp             TEEEEEEECCEEEC
T ss_pred             CCEEEEEEEEEEee
Confidence            99999999988874

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.63  E-value=4.3e-16  Score=133.51  Aligned_cols=94  Identities=24%  Similarity=0.361  Sum_probs=87.2

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCC
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAV  428 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~  428 (1075)
                      .|.|+..+.+..+.+|+++.|.|.+.|.|.+.|+|+|||..|..+.++.+..++..+.|.|.++..+|+|.|+|.|+|..
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   80 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY   80 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETT
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECC
Confidence            37899999999999999999999999999999999999999998888888888899999999999999999999999999


Q ss_pred             CceeeEEEEEeecC
Q psy16863        429 GRSHCSCELSVLVP  442 (1075)
Q Consensus       429 g~~~~s~~l~V~~~  442 (1075)
                      |....++.|.|...
T Consensus        81 G~~~~~~~l~V~~~   94 (97)
T d1koaa1          81 GTKEEIVFLNVTRH   94 (97)
T ss_dssp             EEEEEEECCEEECS
T ss_pred             CEEEEEEEEEEeec
Confidence            99988888888654

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.5e-15  Score=131.15  Aligned_cols=95  Identities=19%  Similarity=0.334  Sum_probs=88.8

Q ss_pred             CeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCC
Q psy16863        350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG  429 (1075)
Q Consensus       350 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g  429 (1075)
                      |.|+..+.+..+.+|+++.|.|.+.|.|.+.|+|+|||..|..+.++.+...+..+.|.|.++..+|+|.|+|.|+|..|
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   80 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLG   80 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSC
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCC
Confidence            67888888999999999999999999999999999999999999999998888889999999999999999999999999


Q ss_pred             ceeeEEEEEeecCCC
Q psy16863        430 RSHCSCELSVLVPKA  444 (1075)
Q Consensus       430 ~~~~s~~l~V~~~~~  444 (1075)
                      ....++.|.|...|.
T Consensus        81 ~~~~~~~l~V~~~P~   95 (101)
T d2cqva1          81 SRQAQVNLTVVDKPD   95 (101)
T ss_dssp             EEECCEEEEEECSCS
T ss_pred             EEEEEEEEEEEecCC
Confidence            999999999987653

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.62  E-value=1.4e-15  Score=130.49  Aligned_cols=94  Identities=22%  Similarity=0.290  Sum_probs=84.8

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEE-EEcCCEEEEEEcccCCCCceeEEEEEEe
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRT-QHDGNFYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~-~~~g~~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      .+|.|+..+.+..+.+|+.++|.|.+.|.|.|.|+|||||.+|..+.++.. ...++.+.|.|.++..+|+|.|+|.|+|
T Consensus         3 eaP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N   82 (98)
T d1g1ca_           3 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   82 (98)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cCCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEE
Confidence            378999999999999999999999999999999999999999988776544 4567788999999999999999999999


Q ss_pred             CCCceeeEEEEEeec
Q psy16863        427 AVGRSHCSCELSVLV  441 (1075)
Q Consensus       427 ~~g~~~~s~~l~V~~  441 (1075)
                      ..|...+++.|.|..
T Consensus        83 ~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          83 IAGETSSHAFLLVQA   97 (98)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEEEEEE
Confidence            999999888888863

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.61  E-value=1.9e-15  Score=130.76  Aligned_cols=93  Identities=25%  Similarity=0.494  Sum_probs=85.2

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEc-CCEEEEEEcccCCCCceeEEEEEEe
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHD-GNFYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~-g~~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      .+|.|...+.++.+.+|+++.|.|.+.|.|.+.|.|+|||.+|..+.++.+... ...+.|.|.++..+|+|.|+|.|+|
T Consensus         7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   86 (102)
T d1fhga_           7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN   86 (102)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEE
Confidence            478899999999999999999999999999999999999999999988887654 4577899999999999999999999


Q ss_pred             CCCceeeEEEEEee
Q psy16863        427 AVGRSHCSCELSVL  440 (1075)
Q Consensus       427 ~~g~~~~s~~l~V~  440 (1075)
                      ..|....++.|.|.
T Consensus        87 ~~G~~~~~~~L~V~  100 (102)
T d1fhga_          87 SLGEATCTAELLVE  100 (102)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEEE
Confidence            99999989888875

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.61  E-value=8.4e-16  Score=130.48  Aligned_cols=92  Identities=18%  Similarity=0.219  Sum_probs=86.1

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCC
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAV  428 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~  428 (1075)
                      +|.|+..+.++.+.+|+++.|.|.+.|.|.|.++|+|||..+..+.++.+...+..+.|.|.++..+|+|.|+|.|+|..
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~   81 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNEL   81 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETT
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECC
Confidence            68898899999999999999999999999999999999999998888888888888899999999999999999999999


Q ss_pred             CceeeEEEEEee
Q psy16863        429 GRSHCSCELSVL  440 (1075)
Q Consensus       429 g~~~~s~~l~V~  440 (1075)
                      |..+.++.|.|+
T Consensus        82 G~~~~~~~l~V~   93 (93)
T d1wiua_          82 GEDEAIFEVIVQ   93 (93)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             CEEEEEEEEEEC
Confidence            999888888773

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.59  E-value=3.1e-15  Score=125.15  Aligned_cols=87  Identities=24%  Similarity=0.424  Sum_probs=79.2

Q ss_pred             CeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCC
Q psy16863        350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG  429 (1075)
Q Consensus       350 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g  429 (1075)
                      |.|+..+.+..+.+|+++.|.|.+.|.|.|.|+|+|||.+|..+.++.+..  .  .|.|.++..+|+|.|+|.|.|..|
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~--~--~L~i~~v~~~D~G~Y~C~a~N~~G   77 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSG--G--ELRFSKLVLEDSGMYQCVAENKHG   77 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEET--T--EEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeeee--e--eEEEEeecccCCEEEEEEEEeCCC
Confidence            788999999999999999999999999999999999999999888876642  2  489999999999999999999999


Q ss_pred             ceeeEEEEEee
Q psy16863        430 RSHCSCELSVL  440 (1075)
Q Consensus       430 ~~~~s~~l~V~  440 (1075)
                      ....++.|.|.
T Consensus        78 ~~~~~~~l~V~   88 (89)
T d1cs6a4          78 TVYASAELTVQ   88 (89)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            99888888875

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.58  E-value=3.2e-16  Score=132.42  Aligned_cols=89  Identities=17%  Similarity=0.337  Sum_probs=78.8

Q ss_pred             EEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCce
Q psy16863        751 FIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQ  830 (1075)
Q Consensus       751 ~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~  830 (1075)
                      |+..++++.+.+|+++.|.|.+.|.|.|.++|+|||.+|..+.++.+.... ..+.|.|.+++.+|+|.|+|.|.|.+|.
T Consensus         2 ii~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~N~~G~   80 (91)
T d1tnna_           2 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTK-YKSTFEISSVQASDEGNYSVVVENSEGK   80 (91)
T ss_dssp             CSBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECS-SEEEEECSSCCSCCCEEEEEECBCSSCB
T ss_pred             EEeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeec-ceeEEeecCCCHHHCEEEEEEEEECCCE
Confidence            445567788999999999999999999999999999999988888776544 4679999999999999999999999999


Q ss_pred             EEEEEEEEEE
Q psy16863        831 SITSCFLKLN  840 (1075)
Q Consensus       831 ~~~s~~l~V~  840 (1075)
                      +..++.|.|+
T Consensus        81 ~~~~~~l~V~   90 (91)
T d1tnna_          81 QEAEFTLTIQ   90 (91)
T ss_dssp             CCEEEEEECC
T ss_pred             EEEEEEEEEE
Confidence            9888887764

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.58  E-value=4.8e-16  Score=132.98  Aligned_cols=82  Identities=15%  Similarity=0.366  Sum_probs=69.9

Q ss_pred             eeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEE
Q psy16863        758 CQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFL  837 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l  837 (1075)
                      ..+..|+++.|.|.+.|.|.|.|+|+|||++|..+.++.......+...|.|.+++.+|+|.|+|.|+|.+|.+..++.|
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   94 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   94 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEE
Confidence            45789999999999999999999999999999876544332223334589999999999999999999999999888888


Q ss_pred             EE
Q psy16863        838 KL  839 (1075)
Q Consensus       838 ~V  839 (1075)
                      .|
T Consensus        95 ~V   96 (97)
T d3dara1          95 DV   96 (97)
T ss_dssp             EE
T ss_pred             EE
Confidence            77

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.58  E-value=2.6e-15  Score=125.73  Aligned_cols=86  Identities=19%  Similarity=0.385  Sum_probs=73.2

Q ss_pred             CCeEEeccc-eeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        748 APKFIEGLK-SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       748 ~p~~~~~~~-~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      +|.|...+. ...+.+|+++.|.|.+.|.|.|.|+|+|||.+|..+ ++.+.  + +  .|.|.+++.+|+|.|+|.|.|
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~~--~-~--~L~i~~v~~~d~G~Y~C~a~N   75 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVT--D-S--GLVIKGVKNGDKGYYGCRATN   75 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEE--T-T--EEEESSCCSTTCEEEEEEEEE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc-cEEEe--e-e--eEEECCCChhhCEEEEEEEEE
Confidence            577777654 466889999999999999999999999999999654 55443  2 2  599999999999999999999


Q ss_pred             CCceEEEEEEEEE
Q psy16863        827 DFGQSITSCFLKL  839 (1075)
Q Consensus       827 ~~G~~~~s~~l~V  839 (1075)
                      .+|.+..++.|.|
T Consensus        76 ~~G~~~~~~~l~V   88 (89)
T d1biha4          76 EHGDKYFETLVQV   88 (89)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEE
Confidence            9999988888876

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=3.8e-15  Score=125.70  Aligned_cols=90  Identities=14%  Similarity=0.208  Sum_probs=77.8

Q ss_pred             CeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCC
Q psy16863        749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDF  828 (1075)
Q Consensus       749 p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~  828 (1075)
                      +.|...+.+..+.+|+.+.|.|.+.|.|.|.++|+|+|+.+....+..+.....+  .|.|.+++.+|+|.|+|.|.|..
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~n~~   79 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN--YLQIRGIKKTDEGTYRCEGRILA   79 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTS--CEEETTCCGGGCEEEEEEEEEGG
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeee--eEEECCCCHHhCEEEEEEEEECc
Confidence            5678888899999999999999999999999999999999987766555444443  69999999999999999999998


Q ss_pred             ceEEEEEEEEEE
Q psy16863        829 GQSITSCFLKLN  840 (1075)
Q Consensus       829 G~~~~s~~l~V~  840 (1075)
                      |.......+.|.
T Consensus        80 ~~~~~~~~i~Vi   91 (92)
T d1epfa2          80 RGEINFKDIQVI   91 (92)
T ss_dssp             GTEEEEEEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            888777777765

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.55  E-value=2.1e-15  Score=127.32  Aligned_cols=89  Identities=18%  Similarity=0.320  Sum_probs=82.0

Q ss_pred             eeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCce
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS  431 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~  431 (1075)
                      |+..|.++.+.+|+++.|.|.+.|.|.|.|.|+|||..|..+.++.+...+..+.|.|.++..+|+|.|+|.|.|..|..
T Consensus         2 ii~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~   81 (91)
T d1tnna_           2 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQ   81 (91)
T ss_dssp             CSBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBC
T ss_pred             EEeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEE
Confidence            55677889999999999999999999999999999999998888888888888999999999999999999999999999


Q ss_pred             eeEEEEEee
Q psy16863        432 HCSCELSVL  440 (1075)
Q Consensus       432 ~~s~~l~V~  440 (1075)
                      ..++.|.|+
T Consensus        82 ~~~~~l~V~   90 (91)
T d1tnna_          82 EAEFTLTIQ   90 (91)
T ss_dssp             CEEEEEECC
T ss_pred             EEEEEEEEE
Confidence            888888774

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=6.5e-15  Score=126.93  Aligned_cols=94  Identities=22%  Similarity=0.356  Sum_probs=74.7

Q ss_pred             CCeEEeccc--eeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEE-EEeeCcEEEEEEccccCCCCeEEEEEE
Q psy16863        748 APKFIEGLK--SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKI-LKETLGVCHLKIHALEVADQAEWKCIA  824 (1075)
Q Consensus       748 ~p~~~~~~~--~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~C~A  824 (1075)
                      ||.|.....  +.++..|+++.|.|.+.|.|.|.|+|+|+|.++........ .........|.|.+++.+|+|.|+|.|
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIA   82 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEE
Confidence            677765544  45677899999999999999999999999999975432111 111223458999999999999999999


Q ss_pred             EeCCceEEEEEEEEEEe
Q psy16863        825 TNDFGQSITSCFLKLNV  841 (1075)
Q Consensus       825 ~N~~G~~~~s~~l~V~~  841 (1075)
                      +|.+|.+..++.|.|..
T Consensus        83 ~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          83 ENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCCEEEEEEEEEEEE
Confidence            99999999999988864

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.51  E-value=1.3e-14  Score=122.22  Aligned_cols=87  Identities=16%  Similarity=0.203  Sum_probs=71.6

Q ss_pred             CCCeEEec-cceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEE
Q psy16863        747 KAPKFIEG-LKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT  825 (1075)
Q Consensus       747 ~~p~~~~~-~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~  825 (1075)
                      .+|.|... +.+..+.+|+++.|.|.+.|.|.|.|+|+|++..+....     ....  ..|.|.+++.+|+|.|+|.|+
T Consensus         3 ~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~-----~~~~--~~L~I~~v~~~D~G~Y~C~a~   75 (91)
T d1cs6a3           3 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW-----LSSE--PLLHIQNVDFEDEGTYECEAE   75 (91)
T ss_dssp             EEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCC-----SBSS--SEEEECSCCGGGCEEEEEEEE
T ss_pred             cCCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEe-----eeee--eEEEeCCCCccCCEEEEEEEE
Confidence            46777654 578889999999999999999999999999875443221     1112  379999999999999999999


Q ss_pred             eCCceEEEEEEEEEE
Q psy16863        826 NDFGQSITSCFLKLN  840 (1075)
Q Consensus       826 N~~G~~~~s~~l~V~  840 (1075)
                      |.+|.+..++.|.|+
T Consensus        76 N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          76 NIKGRDTYQGRIIIH   90 (91)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             ECCCEEEEEEEEEEE
Confidence            999999888888886

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.1e-14  Score=117.32  Aligned_cols=81  Identities=20%  Similarity=0.353  Sum_probs=66.9

Q ss_pred             CeEEeccceeeeecCCeEEEEEEEecCCCC-eEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeC
Q psy16863        749 PKFIEGLKSCQATVNEEFKFTVQVSISPEP-KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND  827 (1075)
Q Consensus       749 p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p-~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~  827 (1075)
                      |.|+..+.+..+..|+++.|.|.+.|.|.| +|+|+|||.+|.....          ..+.|.....+|+|.|+|.|+|.
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~----------~~~~l~~~~~~d~G~Y~C~A~N~   71 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP----------SPSVLNVTGVTQSTMFSCEAHNL   71 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE----------SSEEEEECCCSSCEEEEEEEEET
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCC----------cceEEecCCccccEEEEEEEEcC
Confidence            788888999999999999999999999988 9999999999865421          13556666778999999999999


Q ss_pred             CceEEE-EEEEEE
Q psy16863        828 FGQSIT-SCFLKL  839 (1075)
Q Consensus       828 ~G~~~~-s~~l~V  839 (1075)
                      +|...+ .+.|.|
T Consensus        72 ~G~~~S~~~~v~V   84 (85)
T d1rhfa2          72 KGLASSRTATVHL   84 (85)
T ss_dssp             TEEEECCCEEEEE
T ss_pred             CCcEEEEEEEEEE
Confidence            997543 566655

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.7e-14  Score=119.73  Aligned_cols=86  Identities=17%  Similarity=0.296  Sum_probs=72.7

Q ss_pred             cceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeC-cEEEEEEccccCCCCeEEEEEEEeCCceEE-
Q psy16863        755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETL-GVCHLKIHALEVADQAEWKCIATNDFGQSI-  832 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~-  832 (1075)
                      +.++.+.+|+++.|.|.+.|.|.|.+.|+|||.++..+.+..+..... ....|.|.+++.+|+|.|+|.|.|..|... 
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S   82 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS   82 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEEC
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEE
Confidence            356789999999999999999999999999999998877766554333 356899999999999999999999999864 


Q ss_pred             EEEEEEEE
Q psy16863        833 TSCFLKLN  840 (1075)
Q Consensus       833 ~s~~l~V~  840 (1075)
                      ..++|.|+
T Consensus        83 ~~~~l~V~   90 (91)
T d1rhfa1          83 QPVWLTVE   90 (91)
T ss_dssp             CCEEEEEE
T ss_pred             EEEEEEEE
Confidence            36777764

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=5.1e-14  Score=121.37  Aligned_cols=94  Identities=16%  Similarity=0.185  Sum_probs=75.6

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEee----CcEEEEEEccccCCCCeEEEE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKET----LGVCHLKIHALEVADQAEWKC  822 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~----~~~~~L~I~~~~~~D~G~Y~C  822 (1075)
                      .||.|.....   ...++...|.|.+.|.|.|+|+|+|||++|..+.++.+....    .....|.|.+++.+|+|.|+|
T Consensus         3 ~pP~it~~~~---~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   79 (103)
T d1wwbx_           3 FAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTL   79 (103)
T ss_dssp             CCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEE
T ss_pred             cCCeeEEcCC---CccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEE
Confidence            5777754322   236778889999999999999999999999988766654321    124579999999999999999


Q ss_pred             EEEeCCceEEEEEEEEEEecC
Q psy16863        823 IATNDFGQSITSCFLKLNVPK  843 (1075)
Q Consensus       823 ~A~N~~G~~~~s~~l~V~~~~  843 (1075)
                      .|+|.+|++..++.|.|..+|
T Consensus        80 ~a~N~~G~~~~~~~v~V~~~P  100 (103)
T d1wwbx_          80 IAKNEYGKDEKQISAHFMGWP  100 (103)
T ss_dssp             EEECSSCEEEEEEEECCSCCC
T ss_pred             EEeccCCEEEEEEEEEEEeCC
Confidence            999999999888888876544

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.49  E-value=5.4e-14  Score=123.74  Aligned_cols=93  Identities=19%  Similarity=0.397  Sum_probs=72.1

Q ss_pred             CCCeEEec-cceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeec----CC--------cEEEEEeeCcEEEEEEcccc
Q psy16863        747 KAPKFIEG-LKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVE----SD--------NVKILKETLGVCHLKIHALE  813 (1075)
Q Consensus       747 ~~p~~~~~-~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~----~~--------~~~~~~~~~~~~~L~I~~~~  813 (1075)
                      .+|.|..+ +++.++..|+++.|.|.+.|.|.|.|.|+|++.....    ..        .........+...|.|.+++
T Consensus         3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   82 (109)
T d2fdbp2           3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT   82 (109)
T ss_dssp             SCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCC
T ss_pred             CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCC
Confidence            47888776 5789999999999999999999999999997654321    11        11111112235689999999


Q ss_pred             CCCCeEEEEEEEeCCceEEEEEEEEE
Q psy16863        814 VADQAEWKCIATNDFGQSITSCFLKL  839 (1075)
Q Consensus       814 ~~D~G~Y~C~A~N~~G~~~~s~~l~V  839 (1075)
                      .+|+|.|+|.|.|.+|.+.+++.|.|
T Consensus        83 ~~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          83 FEDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             HHHCeEEEEEEEECCCEEEEEEEEEE
Confidence            99999999999999999999999887

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=8.8e-14  Score=120.76  Aligned_cols=94  Identities=15%  Similarity=0.174  Sum_probs=75.0

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeC---cEEEEEEccccCCCCeEEEEE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETL---GVCHLKIHALEVADQAEWKCI  823 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~  823 (1075)
                      .||+++...+.   ..+....|.|.+.|.|.|+++|+|||++|..+.++.+.....   ..+.|.|.+++.+|+|.|+|.
T Consensus         4 ~PP~i~~~~~~---~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (105)
T d1wwca_           4 YPPRVVSLEEP---ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLI   80 (105)
T ss_dssp             CCCCCCCCCCC---CCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEE
T ss_pred             cCCeeEEeCCC---EEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEE
Confidence            68887653222   234556788999999999999999999998887766543322   246799999999999999999


Q ss_pred             EEeCCceEEEEEEEEEEecC
Q psy16863        824 ATNDFGQSITSCFLKLNVPK  843 (1075)
Q Consensus       824 A~N~~G~~~~s~~l~V~~~~  843 (1075)
                      |+|.+|.+++++.|.|..+|
T Consensus        81 a~N~~G~~~~~~~v~V~~~P  100 (105)
T d1wwca_          81 AKNPLGTANQTINGHFLKEP  100 (105)
T ss_dssp             EEETTEEEEEEEEECCSCCC
T ss_pred             EEcCCCEEEEEEEEEEEeCC
Confidence            99999999999888886554

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.4e-14  Score=117.01  Aligned_cols=80  Identities=26%  Similarity=0.505  Sum_probs=62.6

Q ss_pred             Ceeeeecce-eecCCCeEEEEEEEEccCCC-eeEEEECCEEcCCCCeeEEEECCCCceeeEEEEEEEEeCCeeEEE-EEE
Q psy16863        848 PKFLEELKA-VLSEGGAVNLECKVIGVPQP-TLKWFKDGRELKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSS-SAA  924 (1075)
Q Consensus       848 p~~~~~~~~-~~~~g~~~~L~C~v~g~p~p-~v~W~k~g~~l~~~~~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~-~~~  924 (1075)
                      |.|...+.. .+.+|+++.|.|.+.|.|.| +|+|||||.+|.......+.+......|+|.|+|.|+|.+|...+ .++
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~~~   81 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTAT   81 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEESSEEEEECCCSSCEEEEEEEEETTEEEECCCEE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCCcceEEecCCccccEEEEEEEEcCCCcEEEEEEE
Confidence            556665554 37899999999999999998 899999999998765443334444556899999999999997654 566


Q ss_pred             EEE
Q psy16863        925 LLG  927 (1075)
Q Consensus       925 l~v  927 (1075)
                      |.|
T Consensus        82 v~V   84 (85)
T d1rhfa2          82 VHL   84 (85)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            665

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.5e-13  Score=120.56  Aligned_cols=94  Identities=15%  Similarity=0.260  Sum_probs=76.6

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCC---CCeEEEEECCEEeec---CCcEEEEEe-----eCcEEEEEEccccCCC
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISP---EPKVSWFRDDQQVVE---SDNVKILKE-----TLGVCHLKIHALEVAD  816 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p---~p~v~W~k~g~~i~~---~~~~~~~~~-----~~~~~~L~I~~~~~~D  816 (1075)
                      .|.|+..++++++..|++++|.|.+.|.|   .|.|.|+|++.....   ..++.....     ....+.|.|.+++.+|
T Consensus         4 ~~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (110)
T d2avga1           4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (110)
T ss_dssp             TCSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTC
T ss_pred             CCEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHH
Confidence            46899999999999999999999999998   578999998864422   223332211     1135689999999999


Q ss_pred             CeEEEEEEEeCCceEEEEEEEEEEe
Q psy16863        817 QAEWKCIATNDFGQSITSCFLKLNV  841 (1075)
Q Consensus       817 ~G~Y~C~A~N~~G~~~~s~~l~V~~  841 (1075)
                      +|.|+|.|+|..|.+.+++.|.|+.
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~~  108 (110)
T d2avga1          84 TGGYRCEVSTKDKFDCSNFNLTVHE  108 (110)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEES
T ss_pred             CcEEEEEEEECCCeEEEEEEEEEEe
Confidence            9999999999999999999999875

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.47  E-value=2.1e-14  Score=122.79  Aligned_cols=90  Identities=17%  Similarity=0.288  Sum_probs=74.3

Q ss_pred             CCCeEEeccceeeeecC---CeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEE
Q psy16863        747 KAPKFIEGLKSCQATVN---EEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCI  823 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g---~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~  823 (1075)
                      .+|.|+..+.+..+..|   +++.|.|.+.|.|.|.++|+|||.+|..+....+.... + ..|.|..++.+|+|.|+|.
T Consensus         3 ~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~-~-~~l~i~~~~~~d~G~Y~C~   80 (97)
T d1cs6a1           3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVA-G-DLVISNPVKAKDAGSYQCV   80 (97)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEET-T-EEEEESCCHHHHCEEEEEE
T ss_pred             cCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeee-e-eEEEEecccccCCEEEEEE
Confidence            57899988888887766   78999999999999999999999999776555444333 2 4788999999999999999


Q ss_pred             EEeCCceEEE-EEEEE
Q psy16863        824 ATNDFGQSIT-SCFLK  838 (1075)
Q Consensus       824 A~N~~G~~~~-s~~l~  838 (1075)
                      |+|.+|.+.+ ++.|.
T Consensus        81 a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          81 ATNARGTVVSREASLR   96 (97)
T ss_dssp             EEETTEEEECCCEEEE
T ss_pred             EEECCCEEEEEEEEEe
Confidence            9999998754 55553

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.47  E-value=6.1e-14  Score=117.21  Aligned_cols=86  Identities=20%  Similarity=0.282  Sum_probs=72.1

Q ss_pred             CCeeeeecC-ceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        349 APAFIRRLH-DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       349 ~p~~~~~~~-~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      +|.|...+. ...+.+|+++.|.|.+.|.|.|.|+|+|||.+|..+ ++.+..+    .|.|.++..+|+|.|+|.|.|.
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~~~~----~L~i~~v~~~d~G~Y~C~a~N~   76 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVTDS----GLVIKGVKNGDKGYYGCRATNE   76 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEETT----EEEESSCCSTTCEEEEEEEEET
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc-cEEEeee----eEEECCCChhhCEEEEEEEEEC
Confidence            467776654 467899999999999999999999999999999654 4444322    3899999999999999999999


Q ss_pred             CCceeeEEEEEe
Q psy16863        428 VGRSHCSCELSV  439 (1075)
Q Consensus       428 ~g~~~~s~~l~V  439 (1075)
                      .|....++.|.|
T Consensus        77 ~G~~~~~~~l~V   88 (89)
T d1biha4          77 HGDKYFETLVQV   88 (89)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            999888877776

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.47  E-value=3.3e-14  Score=120.85  Aligned_cols=84  Identities=14%  Similarity=0.197  Sum_probs=71.3

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCC-eEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEP-KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p-~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      +|.|...+.+..+.+|+++.|.|.+.|.|.| .+.|+|||++|..+..........  ..|.|.+++.+|+|.|+|.|.|
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~--~~L~i~~v~~~D~G~Y~C~a~N   79 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDE--GSLVFLRPQASDEGHYQCFAET   79 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTS--CCEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccc--eEEEEeccChhcCeEEEEEEEe
Confidence            6888888999999999999999999999966 799999999997665444333332  3799999999999999999999


Q ss_pred             CCceEEE
Q psy16863        827 DFGQSIT  833 (1075)
Q Consensus       827 ~~G~~~~  833 (1075)
                      .+|.+.+
T Consensus        80 ~~G~~~s   86 (94)
T d1biha1          80 PAGVASS   86 (94)
T ss_dssp             TTEEEEC
T ss_pred             CCCEEEE
Confidence            9998653

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.3e-14  Score=118.79  Aligned_cols=74  Identities=12%  Similarity=0.113  Sum_probs=64.3

Q ss_pred             cceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEE
Q psy16863        755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITS  834 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s  834 (1075)
                      +.+.++.+|+.+.|.|.+.|.|.|+++|+|+|..+....              .+.+++.+|+|.|+|+|+|.+|+++.+
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~--------------~~~~v~~~d~G~Y~C~A~N~~G~~~~~   76 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG--------------ESVTVTRDLEGTYLCRARSTQGEVTRE   76 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT--------------SCEECCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeee--------------eeeccccCCCCEEEEEEEcCCCEEEEE
Confidence            467789999999999999999999999999998775433              244678899999999999999999999


Q ss_pred             EEEEEEec
Q psy16863        835 CFLKLNVP  842 (1075)
Q Consensus       835 ~~l~V~~~  842 (1075)
                      +.|.|..|
T Consensus        77 ~~l~V~~P   84 (84)
T d2oz4a3          77 VTVNVLSP   84 (84)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEECC
Confidence            99998764

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.4e-13  Score=117.36  Aligned_cols=91  Identities=16%  Similarity=0.258  Sum_probs=75.8

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCC-eEEEEECCEEee------cCCcEEEEEeeCcEEEEEEcccc-CCCCeE
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEP-KVSWFRDDQQVV------ESDNVKILKETLGVCHLKIHALE-VADQAE  819 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p-~v~W~k~g~~i~------~~~~~~~~~~~~~~~~L~I~~~~-~~D~G~  819 (1075)
                      ||.|...+.+..+.+|+.+.|.|.+.|.|+| .++|+|++..+.      ...++.+... ...+.|.|.++. .+|+|.
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~~D~G~   80 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS-QGRSELHIENLNMEADPGQ   80 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEE-TTEEEEEECSCCTTTSSEE
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeC-CCEEEEEEeccccccCCEE
Confidence            7889888888999999999999999999987 799999764321      2345655543 457899999998 579999


Q ss_pred             EEEEEEeCCceEEEEEEEEE
Q psy16863        820 WKCIATNDFGQSITSCFLKL  839 (1075)
Q Consensus       820 Y~C~A~N~~G~~~~s~~l~V  839 (1075)
                      |+|.|.|.+|.+..++.|.|
T Consensus        81 Y~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          81 YRCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             EEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEECCCEEEEEEEEEE
Confidence            99999999999988888877

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.46  E-value=5.5e-14  Score=119.94  Aligned_cols=90  Identities=16%  Similarity=0.232  Sum_probs=72.1

Q ss_pred             CeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEE-eeCcEEEEEEccccCCCCeEEEEEEEeC
Q psy16863        749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILK-ETLGVCHLKIHALEVADQAEWKCIATND  827 (1075)
Q Consensus       749 p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~A~N~  827 (1075)
                      |.|+  .++..+..|+++.|.|.+.|.|.|.+.|+|+|+++.......+.. .......|.|.+++.+|+|.|+|.|.|.
T Consensus         6 p~~~--~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   83 (97)
T d1biha3           6 PQYV--SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNG   83 (97)
T ss_dssp             EEEE--CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCS
T ss_pred             CeeC--CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEEC
Confidence            4444  357889999999999999999999999999999997655443322 2223357999999999999999999999


Q ss_pred             CceEEE-EEEEEEE
Q psy16863        828 FGQSIT-SCFLKLN  840 (1075)
Q Consensus       828 ~G~~~~-s~~l~V~  840 (1075)
                      +|.+.+ ++.|+|.
T Consensus        84 ~G~~~s~s~~L~Vl   97 (97)
T d1biha3          84 VGKPQKHSLKLTVV   97 (97)
T ss_dssp             SSSCEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEEC
Confidence            998654 6777763

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=9.3e-14  Score=117.46  Aligned_cols=88  Identities=20%  Similarity=0.357  Sum_probs=73.2

Q ss_pred             CCCeEEeccce-eeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCC-cEEEEEeeCcEEEEEEccccCCCCeEEEEEE
Q psy16863        747 KAPKFIEGLKS-CQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESD-NVKILKETLGVCHLKIHALEVADQAEWKCIA  824 (1075)
Q Consensus       747 ~~p~~~~~~~~-~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A  824 (1075)
                      .+|.|+..+.+ ..+.+|+++.|.|.+. .|+|.++|||||.+|..+. ++.+. ...+.+.|.|.++..+|+|.|+|.|
T Consensus         4 ~~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~c~a   81 (94)
T d1pd6a_           4 KSTAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFE-SIGAKRTLTISQCSLADDAAYQCVV   81 (94)
T ss_dssp             TTSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEE-EETTEEEEEECSCSSSSCEEEEEEE
T ss_pred             CCCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeee-ccCCeEEeecCCCCceecEEEEEEE
Confidence            58889988865 5789999999999996 5999999999999997654 45554 4557889999999999999999999


Q ss_pred             EeCCceEEEEEEEEEE
Q psy16863        825 TNDFGQSITSCFLKLN  840 (1075)
Q Consensus       825 ~N~~G~~~~s~~l~V~  840 (1075)
                      .|    ..+++.|.|+
T Consensus        82 ~n----~~~s~~l~V~   93 (94)
T d1pd6a_          82 GG----EKCSTELFVK   93 (94)
T ss_dssp             TT----EEECCEEEEE
T ss_pred             ee----EEEEEEEEEE
Confidence            66    4566777775

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.1e-14  Score=122.94  Aligned_cols=89  Identities=15%  Similarity=0.196  Sum_probs=75.7

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCe-EEEEEEEe
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQA-EWKCIATN  826 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~A~N  826 (1075)
                      .|.|...+.+..+.+|+.+.|.|.+.|.|.|.|+|+|+|.++.......   .......|.|.+++.+|.| .|+|.|+|
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~---~~~~~~~L~i~~~~~~d~G~~Y~C~a~N   78 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKS---GGLPSLGLTLANVTSDLNRKNVTCWAEN   78 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCC---CCSSEEEEEEESCCSTTTTCCEEECCEE
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeee---eeccceeEEEccccccccceEEEEEEEc
Confidence            5888888899999999999999999999999999999998775433221   2334668999999999999 69999999


Q ss_pred             CCceEEEEEEEEE
Q psy16863        827 DFGQSITSCFLKL  839 (1075)
Q Consensus       827 ~~G~~~~s~~l~V  839 (1075)
                      .+|.+..++.|.|
T Consensus        79 ~~G~~~~s~~l~V   91 (92)
T d2ifga1          79 DVGRAEVSVQVNV   91 (92)
T ss_dssp             TTEECCEEECCCC
T ss_pred             CCCEEEEEEEEEE
Confidence            9999988877765

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.3e-13  Score=120.09  Aligned_cols=95  Identities=16%  Similarity=0.260  Sum_probs=75.6

Q ss_pred             eEEeccceeeeecCCeEEEEEEEecCC---CCeEEEEECCEEee---cCCcEEEEEee-----CcEEEEEEccccCCCCe
Q psy16863        750 KFIEGLKSCQATVNEEFKFTVQVSISP---EPKVSWFRDDQQVV---ESDNVKILKET-----LGVCHLKIHALEVADQA  818 (1075)
Q Consensus       750 ~~~~~~~~~~~~~g~~~~l~C~v~g~p---~p~v~W~k~g~~i~---~~~~~~~~~~~-----~~~~~L~I~~~~~~D~G  818 (1075)
                      .|+..+++..+.+|++++|.|.+.|.|   .|.|.|+|++....   ...++.+....     .+.+.|.|.+++.+|+|
T Consensus         2 ~F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   81 (113)
T d2dava1           2 LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAG   81 (113)
T ss_dssp             SCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCE
T ss_pred             EEeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCe
Confidence            366778889999999999999999998   58999999975432   23333332211     12567999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEEecCC
Q psy16863        819 EWKCIATNDFGQSITSCFLKLNVPKH  844 (1075)
Q Consensus       819 ~Y~C~A~N~~G~~~~s~~l~V~~~~~  844 (1075)
                      .|+|.|.|.+|...+++.|.|..++.
T Consensus        82 ~Y~C~a~N~~G~~~~~~~L~V~~~~~  107 (113)
T d2dava1          82 NYRCEVTYKDKFDSCSFDLEVHESTG  107 (113)
T ss_dssp             EEEEEEECSSCEEEECCEEEEECCCC
T ss_pred             EEEEEEEeCCCEEEEEEEEEEEcCCC
Confidence            99999999999999999999986543

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.44  E-value=6.3e-14  Score=119.57  Aligned_cols=72  Identities=26%  Similarity=0.471  Sum_probs=63.3

Q ss_pred             eecCCCeEEEEEEEEccCCCeeEEEECCEEcCCCC----------eeEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEE
Q psy16863        857 VLSEGGAVNLECKVIGVPQPTLKWFKDGRELKAGD----------IHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALL  926 (1075)
Q Consensus       857 ~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~~~~----------~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~  926 (1075)
                      .+.+|+++.|.|.+.|.|.|.|+|+|||.+|..+.          ...|.+......|+|.|+|.|+|.+|.+++++.|.
T Consensus        16 ~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   95 (97)
T d3dara1          16 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD   95 (97)
T ss_dssp             EECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEEE
Confidence            46789999999999999999999999999996432          24677788888999999999999999999999998


Q ss_pred             Ee
Q psy16863        927 GF  928 (1075)
Q Consensus       927 v~  928 (1075)
                      |+
T Consensus        96 Vl   97 (97)
T d3dara1          96 VV   97 (97)
T ss_dssp             EC
T ss_pred             EC
Confidence            74

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=5.1e-13  Score=113.97  Aligned_cols=86  Identities=19%  Similarity=0.337  Sum_probs=70.0

Q ss_pred             cceeeeecCCeEEEEEEEecCCC-CeEEEEE-CCEEee-cCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceE
Q psy16863        755 LKSCQATVNEEFKFTVQVSISPE-PKVSWFR-DDQQVV-ESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQS  831 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p~-p~v~W~k-~g~~i~-~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~  831 (1075)
                      +.+..+..|+++.|.|.+.|.|+ |.|.|+| +|..+. .+.++.+.....+...|.|.+++.+|+|.|+|.|+|..|..
T Consensus         7 P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   86 (97)
T d1epfa1           7 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQ   86 (97)
T ss_dssp             SSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEE
T ss_pred             CCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcE
Confidence            44567889999999999999985 7999999 556554 45677777666778899999999999999999999999975


Q ss_pred             E-EEEEEEEE
Q psy16863        832 I-TSCFLKLN  840 (1075)
Q Consensus       832 ~-~s~~l~V~  840 (1075)
                      . +++.|.|.
T Consensus        87 ~~~tv~l~V~   96 (97)
T d1epfa1          87 SEATVNVKIF   96 (97)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            3 45666553

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.4e-13  Score=115.35  Aligned_cols=85  Identities=21%  Similarity=0.354  Sum_probs=70.8

Q ss_pred             EEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCc--EEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCC
Q psy16863        751 FIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDN--VKILKETLGVCHLKIHALEVADQAEWKCIATNDF  828 (1075)
Q Consensus       751 ~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~--~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~  828 (1075)
                      |+.++++..+..|+++.|.|.+. .|.|.+.|||+|+++..+.+  +.+. .+.+.+.|.|.+++.+|+|.|+|.|.|  
T Consensus         3 i~~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~n--   78 (90)
T d1x44a1           3 VTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIR-VEGKKHILIIEGATKADAAEYSVMTTG--   78 (90)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEE-EETTEEEEEEEEECTTTCSEEEEEETT--
T ss_pred             EEcCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEE-EeCCccEEEECccccccCEEEEEEEec--
Confidence            45678889999999999999995 68899999999999977654  4444 345688999999999999999999976  


Q ss_pred             ceEEEEEEEEEEe
Q psy16863        829 GQSITSCFLKLNV  841 (1075)
Q Consensus       829 G~~~~s~~l~V~~  841 (1075)
                        +.+++.|.|+.
T Consensus        79 --~~~~a~l~V~~   89 (90)
T d1x44a1          79 --GQSSAKLSVDL   89 (90)
T ss_dssp             --EEEEEEEEEEC
T ss_pred             --ceEEEEEEEEE
Confidence              45678888864

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=8.3e-14  Score=116.98  Aligned_cols=84  Identities=19%  Similarity=0.315  Sum_probs=69.6

Q ss_pred             EEeccceeeeecCCeEEEEEEEe-cCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCc
Q psy16863        751 FIEGLKSCQATVNEEFKFTVQVS-ISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFG  829 (1075)
Q Consensus       751 ~~~~~~~~~~~~g~~~~l~C~v~-g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G  829 (1075)
                      ++..++...+.+|+++.|.|.+. +.|.|.|+|+|+|..+..+...    ...+  .|+|.+++.+|+|.|+|.|+|.+|
T Consensus         5 ~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~----~~~~--~L~i~~v~~~d~G~Y~C~a~N~~G   78 (89)
T d1gl4b_           5 TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM----DFNG--ILTIRNVQPSDAGTYVCTGSNMFA   78 (89)
T ss_dssp             EECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEE----EETT--EEEECSCCGGGCEEEEEEEECSSC
T ss_pred             EEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccE----eece--EEEEecCCcccCEEEEEEEEECCC
Confidence            34456678899999999999997 6788999999999887665422    1223  699999999999999999999999


Q ss_pred             eEEEEEEEEEE
Q psy16863        830 QSITSCFLKLN  840 (1075)
Q Consensus       830 ~~~~s~~l~V~  840 (1075)
                      .+..++.|.|+
T Consensus        79 ~~~~~~~l~V~   89 (89)
T d1gl4b_          79 MDQGTATLHVQ   89 (89)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EEEEEEEEEEC
Confidence            99888888773

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.3e-13  Score=113.66  Aligned_cols=75  Identities=12%  Similarity=0.180  Sum_probs=64.7

Q ss_pred             eeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEE
Q psy16863        757 SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCF  836 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~  836 (1075)
                      +..+.+|++++|.|.+.|.|.|.|+|+|++..+..+         .  ..|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~~---------~--~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~   76 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG---------G--KTLSVSQLELQDSGTWTCTVLQNQKKVEFKID   76 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEEE---------S--SEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEeecccceee---------e--eeeeeeecccccccEEEEEEEeCCCEEEEEEE
Confidence            345889999999999999999999999987654322         1  26999999999999999999999999999988


Q ss_pred             EEEEec
Q psy16863        837 LKLNVP  842 (1075)
Q Consensus       837 l~V~~~  842 (1075)
                      |.|...
T Consensus        77 v~V~~~   82 (84)
T d2nxyb2          77 IVVLAF   82 (84)
T ss_dssp             ECEECC
T ss_pred             EEEEec
Confidence            888753

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=1e-13  Score=116.75  Aligned_cols=91  Identities=18%  Similarity=0.222  Sum_probs=74.6

Q ss_pred             CeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCC
Q psy16863        350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG  429 (1075)
Q Consensus       350 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g  429 (1075)
                      +.|...|.+..+.+|+.+.|.|.+.|.|.|.++|+|+|..+....+......+. ..|.|.++..+|+|.|+|.|.|.+|
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~-~~L~I~~~~~~D~G~Y~C~a~n~~~   80 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILAR   80 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTT-SCEEETTCCGGGCEEEEEEEEEGGG
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeee-eeEEECCCCHHhCEEEEEEEEECcC
Confidence            567788899999999999999999999999999999999987654433332222 1489999999999999999999888


Q ss_pred             ceeeEEEEEeec
Q psy16863        430 RSHCSCELSVLV  441 (1075)
Q Consensus       430 ~~~~s~~l~V~~  441 (1075)
                      .......+.|.+
T Consensus        81 ~~~~~~~i~ViV   92 (92)
T d1epfa2          81 GEINFKDIQVIV   92 (92)
T ss_dssp             TEEEEEEEEEEC
T ss_pred             CEEEEEEEEEEC
Confidence            777677776653

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.8e-13  Score=113.98  Aligned_cols=85  Identities=13%  Similarity=0.176  Sum_probs=68.4

Q ss_pred             CeEEecc-ceeeeecCCeEEEEEEEe-cCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        749 PKFIEGL-KSCQATVNEEFKFTVQVS-ISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       749 p~~~~~~-~~~~~~~g~~~~l~C~v~-g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      |.++..+ ....+.+|+++.|.|.+. |.|.|.++|+|++.++..   .   ........|+|.+++.+|+|.|+|+|+|
T Consensus         3 P~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~---~---~~~~~~~~L~i~~v~~~D~G~Y~C~Asn   76 (90)
T d1gsma1           3 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA---V---QSDTGRSVLTVRNASLSAAGTRVCVGSC   76 (90)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC---E---EEESSEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee---e---eccCceeeEEcCccChhhCCcEEEEEEe
Confidence            3344443 457788999999999985 789999999998876632   1   1234467899999999999999999999


Q ss_pred             CCceEEEEEEEEE
Q psy16863        827 DFGQSITSCFLKL  839 (1075)
Q Consensus       827 ~~G~~~~s~~l~V  839 (1075)
                      ..|..+.++.|.|
T Consensus        77 ~~g~~~~s~~l~V   89 (90)
T d1gsma1          77 GGRTFQHTVQLLV   89 (90)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEE
Confidence            9999998988877

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.5e-13  Score=117.13  Aligned_cols=91  Identities=11%  Similarity=0.202  Sum_probs=68.6

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEE--CCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEE
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFR--DDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT  825 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k--~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~  825 (1075)
                      +|.|. .++++.+.+|+++.|.|.+.|.|.|.+.|++  ++.......+............|.|.+++.+|+|.|+|.|.
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   80 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR   80 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEE
Confidence            68897 5899999999999999999999988766543  22222222222222333345679999999999999999999


Q ss_pred             eCCceEEEE-EEEEE
Q psy16863        826 NDFGQSITS-CFLKL  839 (1075)
Q Consensus       826 N~~G~~~~s-~~l~V  839 (1075)
                      |..|.+.++ +.|.|
T Consensus        81 N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          81 TEGGVGISNYAELVV   95 (96)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             eCCCeEEEEEEEEEE
Confidence            999997654 78876

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.1e-13  Score=112.64  Aligned_cols=80  Identities=11%  Similarity=0.191  Sum_probs=67.0

Q ss_pred             eeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEE
Q psy16863        757 SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCF  836 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~  836 (1075)
                      ...+..|+++.|.|.+.|.|.|.++|++++..+..+..    ........|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus        10 ~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~----~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~   85 (90)
T d1vcaa2          10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKV----TNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQ   85 (90)
T ss_dssp             EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEE----EEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEE
T ss_pred             cEEEECCCEEEEEEeccCCCCceEEEEecCccceeeee----eeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEE
Confidence            34577899999999999999999999998876654322    12234668999999999999999999999999998888


Q ss_pred             EEEE
Q psy16863        837 LKLN  840 (1075)
Q Consensus       837 l~V~  840 (1075)
                      |.|.
T Consensus        86 v~V~   89 (90)
T d1vcaa2          86 VEIY   89 (90)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8874

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.7e-13  Score=117.73  Aligned_cols=84  Identities=14%  Similarity=0.181  Sum_probs=68.3

Q ss_pred             cCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeC------cEEEEEEccccCCCCeEEEEEEEeCCceEEEEE
Q psy16863        762 VNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETL------GVCHLKIHALEVADQAEWKCIATNDFGQSITSC  835 (1075)
Q Consensus       762 ~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~------~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~  835 (1075)
                      .++...|.|.+.|.|.|.++|+|||++|..+.++.......      ..+.|.|.++..+|+|.|+|.|.|.+|.+.+++
T Consensus        14 ~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i   93 (107)
T d1he7a_          14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI   93 (107)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEE
Confidence            33444566799999999999999999998877665543321      246799999999999999999999999999999


Q ss_pred             EEEEEecCCC
Q psy16863        836 FLKLNVPKHY  845 (1075)
Q Consensus       836 ~l~V~~~~~~  845 (1075)
                      .|.|..+|..
T Consensus        94 ~v~v~~~P~~  103 (107)
T d1he7a_          94 MAAFMDNPFE  103 (107)
T ss_dssp             EECCCSCTTS
T ss_pred             EEEEEcCCCC
Confidence            9988876643

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=2e-13  Score=117.42  Aligned_cols=93  Identities=18%  Similarity=0.364  Sum_probs=73.7

Q ss_pred             CCeeeeecC--ceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCc--EEEEEcCCEEEEEEcccCCCCceeEEEEE
Q psy16863        349 APAFIRRLH--DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI--YRTQHDGNFYFIDLSSVSLFDSGRWTCLA  424 (1075)
Q Consensus       349 ~p~~~~~~~--~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~--~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a  424 (1075)
                      ||.|...+.  +..+..|+++.|.|.+.|.|.|.|+|+|||..+.....  ...........|.|.+++.+|+|.|+|.|
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIA   82 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEE
Confidence            667765444  34667899999999999999999999999999865432  11222333457999999999999999999


Q ss_pred             EeCCCceeeEEEEEeec
Q psy16863        425 ENAVGRSHCSCELSVLV  441 (1075)
Q Consensus       425 ~n~~g~~~~s~~l~V~~  441 (1075)
                      +|..|....++.|.|..
T Consensus        83 ~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          83 ENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCCEEEEEEEEEEEE
Confidence            99999999888888864

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5.3e-13  Score=115.15  Aligned_cols=92  Identities=14%  Similarity=0.230  Sum_probs=78.6

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCc-EEEEEECCEec----C--CCCcEEEEEcCCEEEEEEcccC-CCCceeE
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEI-KIHWYRNDRKL----E--ENKIYRTQHDGNFYFIDLSSVS-LFDSGRW  420 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~v~W~k~g~~l----~--~~~~~~~~~~g~~~~L~I~~v~-~~d~G~Y  420 (1075)
                      ||.|...+....+.+|+.+.|.|.+.|.|++ .++|||++..+    .  ...++.+...+..+.|.|.++. .+|+|.|
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y   81 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQY   81 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEE
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEE
Confidence            7888888888999999999999999998866 89999976432    1  2356778888888999999998 5799999


Q ss_pred             EEEEEeCCCceeeEEEEEee
Q psy16863        421 TCLAENAVGRSHCSCELSVL  440 (1075)
Q Consensus       421 ~C~a~n~~g~~~~s~~l~V~  440 (1075)
                      +|.|.|..|....++.|.|+
T Consensus        82 ~C~A~N~~G~~~~~~~L~Vr  101 (101)
T d3b5ha1          82 RCNGTSSKGSDQAIITLRVR  101 (101)
T ss_dssp             EEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEECCCEEEEEEEEEEC
Confidence            99999999999888888774

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.6e-13  Score=117.54  Aligned_cols=93  Identities=13%  Similarity=0.244  Sum_probs=72.1

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCC-CCeEEEEECCEEeecC-C-cE-EEEE-eeCcEEEEEEccccCCCCeEEEE
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISP-EPKVSWFRDDQQVVES-D-NV-KILK-ETLGVCHLKIHALEVADQAEWKC  822 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p-~p~v~W~k~g~~i~~~-~-~~-~~~~-~~~~~~~L~I~~~~~~D~G~Y~C  822 (1075)
                      .|.|+..+.+..+..|+++.|.|.+.|.| .|.|+|+|++..+... . .. .... ...+...|.|.+++.+|+|.|+|
T Consensus         3 ~~~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   82 (104)
T d2aw2a1           3 VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRC   82 (104)
T ss_dssp             CEECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEE
T ss_pred             ccEEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEE
Confidence            34567778888999999999999999999 5899999998766422 2 22 2221 12235679999999999999999


Q ss_pred             EEEeCCceEEE-EEEEEEE
Q psy16863        823 IATNDFGQSIT-SCFLKLN  840 (1075)
Q Consensus       823 ~A~N~~G~~~~-s~~l~V~  840 (1075)
                      .|.|..|...+ ++.|.|.
T Consensus        83 ~A~N~~G~~~s~~~~l~V~  101 (104)
T d2aw2a1          83 SANFQSNLIESHSTTLYVT  101 (104)
T ss_dssp             EEEETTEEEECCCEEEEEE
T ss_pred             EEEcCCCeEEEEEEEEEEE
Confidence            99999998654 6777775

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.6e-13  Score=123.96  Aligned_cols=93  Identities=17%  Similarity=0.255  Sum_probs=74.8

Q ss_pred             CCCeEEe-----ccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeec-----------------------------C
Q psy16863        747 KAPKFIE-----GLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVE-----------------------------S  792 (1075)
Q Consensus       747 ~~p~~~~-----~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~-----------------------------~  792 (1075)
                      .||.+..     .+..+.+.+|+.++|.|.+.|.|.|.|+|+|++..+..                             .
T Consensus         3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (130)
T d1gxea_           3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE   82 (130)
T ss_dssp             BCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCS
T ss_pred             CCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccC
Confidence            4666532     34567899999999999999999999999998866542                             1


Q ss_pred             CcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy16863        793 DNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITSCFLKLN  840 (1075)
Q Consensus       793 ~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~  840 (1075)
                      .++.+.. ..+.+.|.|.+++.+|+|.|+|.|+|.+|.+.+++.|.|.
T Consensus        83 ~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          83 GRVRVET-TKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             SSCEEEE-ETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             ceEEEEE-CCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            2344443 3457899999999999999999999999999888888774

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=9.9e-13  Score=110.71  Aligned_cols=85  Identities=20%  Similarity=0.270  Sum_probs=71.3

Q ss_pred             cCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcC--CEEEEEEcccCCCCceeEEEEEEeCCCce-e
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDG--NFYFIDLSSVSLFDSGRWTCLAENAVGRS-H  432 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g--~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~-~  432 (1075)
                      |.++.+.+|+++.|.|.+.|.|.+.|.|+|||..+....+..+....  ....|.|.+++.+|+|.|+|.|+|..|.. +
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S   82 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS   82 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEEC
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEE
Confidence            46788999999999999999999999999999999887765554433  34679999999999999999999999975 4


Q ss_pred             eEEEEEee
Q psy16863        433 CSCELSVL  440 (1075)
Q Consensus       433 ~s~~l~V~  440 (1075)
                      ..+.|.|.
T Consensus        83 ~~~~l~V~   90 (91)
T d1rhfa1          83 QPVWLTVE   90 (91)
T ss_dssp             CCEEEEEE
T ss_pred             EEEEEEEE
Confidence            45666663

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.2e-12  Score=109.47  Aligned_cols=85  Identities=20%  Similarity=0.427  Sum_probs=72.8

Q ss_pred             eeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCC--cEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCC
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENK--IYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG  429 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~--~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g  429 (1075)
                      |..++.+..+.+|+++.|.|.+ +.|.+.+.|||||.++..+.  ++.+..++..+.|.|.++..+|+|.|+|.|.|   
T Consensus         3 i~~~l~~~~v~~G~~v~l~C~v-~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n---   78 (90)
T d1x44a1           3 VTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG---   78 (90)
T ss_dssp             CSBCCCCEEEETTEEEEEEEEC-SSSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT---
T ss_pred             EEcCCCCEEEeCCCcEEEEEEE-CCCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec---
Confidence            5567889999999999999999 56888999999999987654  47788889999999999999999999999955   


Q ss_pred             ceeeEEEEEeec
Q psy16863        430 RSHCSCELSVLV  441 (1075)
Q Consensus       430 ~~~~s~~l~V~~  441 (1075)
                       ...++.|+|..
T Consensus        79 -~~~~a~l~V~~   89 (90)
T d1x44a1          79 -GQSSAKLSVDL   89 (90)
T ss_dssp             -EEEEEEEEEEC
T ss_pred             -ceEEEEEEEEE
Confidence             45677787753

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.7e-13  Score=115.50  Aligned_cols=89  Identities=20%  Similarity=0.265  Sum_probs=75.9

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCce-eEEEEEEeC
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSG-RWTCLAENA  427 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G-~Y~C~a~n~  427 (1075)
                      .|.|...+.+..+.+|+++.|.|.+.|.|.|.|+|+|+|..+.....  .........|.|.+++.+|.| .|+|.|+|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~   79 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM--KSGGLPSLGLTLANVTSDLNRKNVTCWAEND   79 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC--CCCCSSEEEEEEESCCSTTTTCCEEECCEET
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeee--eeeeccceeEEEccccccccceEEEEEEEcC
Confidence            58888889999999999999999999999999999999987754322  223445567999999999999 699999999


Q ss_pred             CCceeeEEEEEe
Q psy16863        428 VGRSHCSCELSV  439 (1075)
Q Consensus       428 ~g~~~~s~~l~V  439 (1075)
                      .|....++.|.|
T Consensus        80 ~G~~~~s~~l~V   91 (92)
T d2ifga1          80 VGRAEVSVQVNV   91 (92)
T ss_dssp             TEECCEEECCCC
T ss_pred             CCEEEEEEEEEE
Confidence            999988877765

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.36  E-value=3.5e-13  Score=113.25  Aligned_cols=86  Identities=20%  Similarity=0.254  Sum_probs=69.7

Q ss_pred             CCeeee-ecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        349 APAFIR-RLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       349 ~p~~~~-~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      +|.|.. .+.+..+.+|++++|.|.+.|.|.|.|+|+|++..+....    ..++.  .|.|.+++.+|+|.|+|.|+|.
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~----~~~~~--~L~I~~v~~~D~G~Y~C~a~N~   77 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW----LSSEP--LLHIQNVDFEDEGTYECEAENI   77 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCC----SBSSS--EEEECSCCGGGCEEEEEEEEET
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEe----eeeee--EEEeCCCCccCCEEEEEEEEEC
Confidence            566654 4578899999999999999999999999999876543321    11222  5899999999999999999999


Q ss_pred             CCceeeEEEEEee
Q psy16863        428 VGRSHCSCELSVL  440 (1075)
Q Consensus       428 ~g~~~~s~~l~V~  440 (1075)
                      .|....++.|.|.
T Consensus        78 ~G~~~~~~~l~V~   90 (91)
T d1cs6a3          78 KGRDTYQGRIIIH   90 (91)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEE
Confidence            9999888888774

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=6.5e-13  Score=113.03  Aligned_cols=90  Identities=13%  Similarity=0.243  Sum_probs=74.1

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeC
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND  827 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~  827 (1075)
                      +|.+.  +.+..+.+|+++.|+|.+.+ |++.|+|+|+|+.|..+.++.+...   ...|.|.+++.+|+|.|+|.|.|.
T Consensus         5 ~P~i~--~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~---~~~L~I~~v~~~d~G~Y~C~a~N~   78 (96)
T d1l6za2           5 QPFLQ--VTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQN---NSILRIDPIKREDAGEYQCEISNP   78 (96)
T ss_dssp             CCCEE--CSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETT---TTEEEECSCCGGGCEEEEEEEESS
T ss_pred             CCeEE--cCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCC---ceEEEEeccchhhceEEEEEEEeC
Confidence            45443  46677999999999999875 6689999999999998888876432   237999999999999999999999


Q ss_pred             CceEEE-EEEEEEEecC
Q psy16863        828 FGQSIT-SCFLKLNVPK  843 (1075)
Q Consensus       828 ~G~~~~-s~~l~V~~~~  843 (1075)
                      +|...+ .+.|.|..+|
T Consensus        79 ~g~~~S~~~~L~V~~~P   95 (96)
T d1l6za2          79 VSVRRSNSIKLDIIFDP   95 (96)
T ss_dssp             SCCEECCCCEEEECCSC
T ss_pred             CCCeEEEeEEEEEEcCC
Confidence            998764 5788887653

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.6e-13  Score=113.60  Aligned_cols=86  Identities=9%  Similarity=0.114  Sum_probs=70.2

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCC-CeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPE-PKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT  825 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~-p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~  825 (1075)
                      .+|.|......+.+.+|+++.|.|.+.|.|+ ++|+|+|+|.++....+....  .++  .|.|.+++.+|+|.|+|.|.
T Consensus         5 ~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~--~~~--~L~I~~v~~~D~G~Y~C~a~   80 (93)
T d1n26a1           5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAG--MGR--RLLLRSVQLHDSGNYSCYRA   80 (93)
T ss_dssp             CCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEE--ESS--EEEECSCCGGGCEEEEEESS
T ss_pred             CCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEec--CCC--EEEECCCChhcCEEEEEEEC
Confidence            6788888888899999999999999998775 599999999999776654432  223  79999999999999999999


Q ss_pred             eCCceEEEEEEEEE
Q psy16863        826 NDFGQSITSCFLKL  839 (1075)
Q Consensus       826 N~~G~~~~s~~l~V  839 (1075)
                      |..+.   +..|.|
T Consensus        81 n~~~~---t~~l~V   91 (93)
T d1n26a1          81 GRPAG---TVHLLV   91 (93)
T ss_dssp             SSCSC---EEEEEE
T ss_pred             Ccccc---EEEEEE
Confidence            87655   344544

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.2e-12  Score=110.41  Aligned_cols=89  Identities=26%  Similarity=0.487  Sum_probs=74.3

Q ss_pred             CCCCeeeeecCc-eeeccCCeEEEEEEEecCCCcEEEEEECCEecCCC-CcEEEEEcCCEEEEEEcccCCCCceeEEEEE
Q psy16863        347 PDAPAFIRRLHD-IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN-KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLA  424 (1075)
Q Consensus       347 ~~~p~~~~~~~~-~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a  424 (1075)
                      ..+|.|+..+.+ ..|.+|+++.|.|.+ +.|.+.++|||||..|..+ .++.+..++..+.|.|.++..+|+|.|+|.|
T Consensus         3 ~~~~~f~~~l~~~~~v~~G~~v~l~c~v-~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a   81 (94)
T d1pd6a_           3 KKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV   81 (94)
T ss_dssp             STTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEE
T ss_pred             CCCCcEEEeCCCCEEECcCCeEEEEEEE-CCCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEE
Confidence            357888888765 579999999999998 4588899999999999765 5677788888899999999999999999999


Q ss_pred             EeCCCceeeEEEEEee
Q psy16863        425 ENAVGRSHCSCELSVL  440 (1075)
Q Consensus       425 ~n~~g~~~~s~~l~V~  440 (1075)
                      .|    ...++.|.|.
T Consensus        82 ~n----~~~s~~l~V~   93 (94)
T d1pd6a_          82 GG----EKCSTELFVK   93 (94)
T ss_dssp             TT----EEECCEEEEE
T ss_pred             ee----EEEEEEEEEE
Confidence            54    4556667664

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.35  E-value=4.7e-14  Score=117.73  Aligned_cols=85  Identities=20%  Similarity=0.277  Sum_probs=73.4

Q ss_pred             eEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCc
Q psy16863        750 KFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFG  829 (1075)
Q Consensus       750 ~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G  829 (1075)
                      .|..++++..+.+|+++.|+|.+. .|.|.+.|+|||++|..+.++.+...+ +.+.|.|.+++.+|+|.|+|.|.|..+
T Consensus         3 ~i~~~l~d~~v~~G~~~~~~c~vs-~p~~~v~W~k~g~~i~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~c~a~n~~~   80 (89)
T d1tiua_           3 EVEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLTASPDCEIIEDG-KKHILILHNCQLGMTGEVSFQAANAKS   80 (89)
T ss_dssp             CCSBCCCCEEEETTSCCCEEEBCS-SSSCCCBCCSSSCCCCSSSSCEEEECS-SCEEEECCSCCSCCCSEECCBCSSCBC
T ss_pred             EEEcCCcCEEEeCCCcEEEEEEEC-CCCcEEEEEEeeeecccceeEEEEeec-eeEEEEEcCCChhcCEEEEEEECceEE
Confidence            356678899999999999999985 799999999999999999999987654 578999999999999999999987644


Q ss_pred             eEEEEEEEEEE
Q psy16863        830 QSITSCFLKLN  840 (1075)
Q Consensus       830 ~~~~s~~l~V~  840 (1075)
                          ++.|.|+
T Consensus        81 ----sa~l~V~   87 (89)
T d1tiua_          81 ----AANLKVK   87 (89)
T ss_dssp             ----CEEEEEE
T ss_pred             ----EEEEEEE
Confidence                4667765

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.35  E-value=7.7e-14  Score=116.38  Aligned_cols=85  Identities=22%  Similarity=0.276  Sum_probs=75.6

Q ss_pred             eeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863        351 AFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGR  430 (1075)
Q Consensus       351 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~  430 (1075)
                      .|.+++.++.+.+|+++.|.|.+ +.|.+.+.|||||.++..+.++.+..++..+.|.|.++..+|+|.|+|.|.|.   
T Consensus         3 ~i~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~---   78 (89)
T d1tiua_           3 EVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANA---   78 (89)
T ss_dssp             CCSBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSC---
T ss_pred             EEEcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECce---
Confidence            46677899999999999999998 57889999999999999999999999999999999999999999999998664   


Q ss_pred             eeeEEEEEee
Q psy16863        431 SHCSCELSVL  440 (1075)
Q Consensus       431 ~~~s~~l~V~  440 (1075)
                       ..++.|.|.
T Consensus        79 -~~sa~l~V~   87 (89)
T d1tiua_          79 -KSAANLKVK   87 (89)
T ss_dssp             -BCCEEEEEE
T ss_pred             -EEEEEEEEE
Confidence             445667775

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.4e-12  Score=111.77  Aligned_cols=93  Identities=12%  Similarity=0.191  Sum_probs=75.2

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCC---CcEEEEEECCEecC---CCCcEEEEE------cCCEEEEEEcccCCCC
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPT---EIKIHWYRNDRKLE---ENKIYRTQH------DGNFYFIDLSSVSLFD  416 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p---~~~v~W~k~g~~l~---~~~~~~~~~------~g~~~~L~I~~v~~~d  416 (1075)
                      .|.|+..|.++.+.+|++++|.|.+.|.|   .|.|.|+|++....   ...++....      ....+.|.|.+++.+|
T Consensus         4 ~~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (110)
T d2avga1           4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (110)
T ss_dssp             TCSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTC
T ss_pred             CCEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHH
Confidence            46788899999999999999999999988   57999999985432   122333221      1134579999999999


Q ss_pred             ceeEEEEEEeCCCceeeEEEEEeec
Q psy16863        417 SGRWTCLAENAVGRSHCSCELSVLV  441 (1075)
Q Consensus       417 ~G~Y~C~a~n~~g~~~~s~~l~V~~  441 (1075)
                      +|.|+|.|+|..|...+++.|.|..
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~~  108 (110)
T d2avga1          84 TGGYRCEVSTKDKFDCSNFNLTVHE  108 (110)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEES
T ss_pred             CcEEEEEEEECCCeEEEEEEEEEEe
Confidence            9999999999999999999998874

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.7e-12  Score=108.01  Aligned_cols=86  Identities=19%  Similarity=0.283  Sum_probs=69.4

Q ss_pred             Ceeeeec-CceeeccCCeEEEEEEEe-cCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        350 PAFIRRL-HDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       350 p~~~~~~-~~~~v~~G~~v~l~C~~~-g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      |.++..+ ....+.+|+++.|.|.+. |.|.+.|+|++++.++..     .........|.|.+++.+|+|.|+|+|+|.
T Consensus         3 P~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~-----~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~   77 (90)
T d1gsma1           3 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA-----VQSDTGRSVLTVRNASLSAAGTRVCVGSCG   77 (90)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC-----EEEESSEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee-----eeccCceeeEEcCccChhhCCcEEEEEEeC
Confidence            3444444 557888999999999985 788999999998876632     233455678999999999999999999999


Q ss_pred             CCceeeEEEEEee
Q psy16863        428 VGRSHCSCELSVL  440 (1075)
Q Consensus       428 ~g~~~~s~~l~V~  440 (1075)
                      .|..+.++.|.|.
T Consensus        78 ~g~~~~s~~l~Vy   90 (90)
T d1gsma1          78 GRTFQHTVQLLVY   90 (90)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEC
Confidence            9998888888773

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=3.4e-13  Score=118.48  Aligned_cols=84  Identities=21%  Similarity=0.341  Sum_probs=63.8

Q ss_pred             eeeecCCeEEEEEEEe-cCCCCeEEEEECCEEeecCCcEEEEE-------eeCcEEEEEEccccCCCCeEEEEEEEeCCc
Q psy16863        758 CQATVNEEFKFTVQVS-ISPEPKVSWFRDDQQVVESDNVKILK-------ETLGVCHLKIHALEVADQAEWKCIATNDFG  829 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~-g~p~p~v~W~k~g~~i~~~~~~~~~~-------~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G  829 (1075)
                      ..+.+|+++.|.|.+. |.|.+.++|+|+|.++..........       .......|.|.+++.+|+|.|+|.|+|.+|
T Consensus        12 ~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   91 (110)
T d1f97a2          12 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG   91 (110)
T ss_dssp             SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSS
T ss_pred             CEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCC
Confidence            4578999999999985 79999999999999886544322211       111234799999999999999999999999


Q ss_pred             eEEEEEEEEEEe
Q psy16863        830 QSITSCFLKLNV  841 (1075)
Q Consensus       830 ~~~~s~~l~V~~  841 (1075)
                      .+..+..+.+++
T Consensus        92 ~~~~s~~v~l~V  103 (110)
T d1f97a2          92 TAMRSEAAHMDA  103 (110)
T ss_dssp             CCEECCCEEEEE
T ss_pred             cEEEEEEEEEEE
Confidence            987766666554

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3.1e-12  Score=107.11  Aligned_cols=80  Identities=11%  Similarity=0.177  Sum_probs=68.3

Q ss_pred             ceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEE
Q psy16863        358 DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCEL  437 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l  437 (1075)
                      ...+.+|+++.|.|.+.|.|.|.++|++++..+..+.   ....+....|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus        10 ~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~---~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v   86 (90)
T d1vcaa2          10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGK---VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV   86 (90)
T ss_dssp             EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSE---EEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEE
T ss_pred             cEEEECCCEEEEEEeccCCCCceEEEEecCccceeee---eeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEE
Confidence            4556789999999999999999999999887665432   3345666789999999999999999999999999888888


Q ss_pred             Eee
Q psy16863        438 SVL  440 (1075)
Q Consensus       438 ~V~  440 (1075)
                      .|.
T Consensus        87 ~V~   89 (90)
T d1vcaa2          87 EIY   89 (90)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            874

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.1e-12  Score=107.98  Aligned_cols=77  Identities=21%  Similarity=0.283  Sum_probs=65.2

Q ss_pred             cCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEE
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC  435 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~  435 (1075)
                      .++..+.+|++++|.|.+.|.|.|.|+|++++..+..        ++.  .|.|.++..+|+|.|+|.|.|..|.....+
T Consensus         6 ~~~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~--------~~~--~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~   75 (84)
T d2nxyb2           6 NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ--------GGK--TLSVSQLELQDSGTWTCTVLQNQKKVEFKI   75 (84)
T ss_dssp             SCSSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEE--------ESS--EEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CCCeEEECCCeEEEEEEeEcCCchheEEEeeccccee--------eee--eeeeeecccccccEEEEEEEeCCCEEEEEE
Confidence            3466789999999999999999999999998765432        222  478999999999999999999999998888


Q ss_pred             EEEeecC
Q psy16863        436 ELSVLVP  442 (1075)
Q Consensus       436 ~l~V~~~  442 (1075)
                      .|.|...
T Consensus        76 ~v~V~~~   82 (84)
T d2nxyb2          76 DIVVLAF   82 (84)
T ss_dssp             EECEECC
T ss_pred             EEEEEec
Confidence            8888754

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.34  E-value=1.4e-12  Score=110.99  Aligned_cols=88  Identities=20%  Similarity=0.312  Sum_probs=70.8

Q ss_pred             CeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEE--EEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRT--QHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       350 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~--~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      |.++  ..+..+.+|+++.|.|.+.|.|.+.|.|+|+|..+.......+  ........|.|.+++.+|+|.|+|.|.|.
T Consensus         6 p~~~--~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   83 (97)
T d1biha3           6 PQYV--SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNG   83 (97)
T ss_dssp             EEEE--CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCS
T ss_pred             CeeC--CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEEC
Confidence            4444  4688999999999999999999999999999999976543322  23333347999999999999999999999


Q ss_pred             CCcee-eEEEEEe
Q psy16863        428 VGRSH-CSCELSV  439 (1075)
Q Consensus       428 ~g~~~-~s~~l~V  439 (1075)
                      .|... .++.|+|
T Consensus        84 ~G~~~s~s~~L~V   96 (97)
T d1biha3          84 VGKPQKHSLKLTV   96 (97)
T ss_dssp             SSSCEEEEEEEEE
T ss_pred             CCcEEEEEEEEEE
Confidence            99864 4677776

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=1.7e-12  Score=108.81  Aligned_cols=84  Identities=14%  Similarity=0.323  Sum_probs=69.0

Q ss_pred             eeeecCceeeccCCeEEEEEEEe-cCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIR-SPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGR  430 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~-g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~  430 (1075)
                      ++..+....+.+|+++.|.|.+. +.|.+.|+|+|+|..+..+..  ...++   .|+|.+++.+|+|.|+|.|+|..|.
T Consensus         5 ~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~--~~~~~---~L~i~~v~~~d~G~Y~C~a~N~~G~   79 (89)
T d1gl4b_           5 TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA--MDFNG---ILTIRNVQPSDAGTYVCTGSNMFAM   79 (89)
T ss_dssp             EECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTE--EEETT---EEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             EEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecccc--Eeece---EEEEecCCcccCEEEEEEEEECCCE
Confidence            34455678899999999999996 678899999999988766543  22233   4899999999999999999999999


Q ss_pred             eeeEEEEEee
Q psy16863        431 SHCSCELSVL  440 (1075)
Q Consensus       431 ~~~s~~l~V~  440 (1075)
                      ...++.|.|+
T Consensus        80 ~~~~~~l~V~   89 (89)
T d1gl4b_          80 DQGTATLHVQ   89 (89)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEEC
Confidence            8888888773

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.1e-12  Score=119.64  Aligned_cols=93  Identities=19%  Similarity=0.290  Sum_probs=77.1

Q ss_pred             CCCeee-----eecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCC-----------------------------C
Q psy16863        348 DAPAFI-----RRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEE-----------------------------N  393 (1075)
Q Consensus       348 ~~p~~~-----~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~-----------------------------~  393 (1075)
                      .||.+.     ..+..+.|.+|++++|.|.+.|.|.+.|.|+|++..+..                             .
T Consensus         3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (130)
T d1gxea_           3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE   82 (130)
T ss_dssp             BCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCS
T ss_pred             CCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccC
Confidence            366653     345678899999999999999999999999998866522                             2


Q ss_pred             CcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEEEEEee
Q psy16863        394 KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSCELSVL  440 (1075)
Q Consensus       394 ~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~  440 (1075)
                      .++.+...+..+.|.|.++..+|+|.|+|.|+|..|...+++.|.|.
T Consensus        83 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          83 GRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             SSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             ceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            24566667778899999999999999999999999999888888775

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.2e-12  Score=109.11  Aligned_cols=94  Identities=15%  Similarity=0.187  Sum_probs=75.3

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEc---C--CEEEEEEcccCCCCceeEEE
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHD---G--NFYFIDLSSVSLFDSGRWTC  422 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~---g--~~~~L~I~~v~~~d~G~Y~C  422 (1075)
                      .||.+.....   ...+....|.|.+.|.|.|+|+|+|||..|..+.+..+...   .  ....|.|.+++.+|+|.|+|
T Consensus         3 ~pP~it~~~~---~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   79 (103)
T d1wwbx_           3 FAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTL   79 (103)
T ss_dssp             CCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEE
T ss_pred             cCCeeEEcCC---CccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEE
Confidence            4777654322   24678889999999999999999999999988776554321   1  23579999999999999999


Q ss_pred             EEEeCCCceeeEEEEEeecCCC
Q psy16863        423 LAENAVGRSHCSCELSVLVPKA  444 (1075)
Q Consensus       423 ~a~n~~g~~~~s~~l~V~~~~~  444 (1075)
                      .|+|..|..+.++.|.|...|.
T Consensus        80 ~a~N~~G~~~~~~~v~V~~~P~  101 (103)
T d1wwbx_          80 IAKNEYGKDEKQISAHFMGWPG  101 (103)
T ss_dssp             EEECSSCEEEEEEEECCSCCCC
T ss_pred             EEeccCCEEEEEEEEEEEeCCC
Confidence            9999999999888888876653

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.33  E-value=2.4e-12  Score=112.85  Aligned_cols=93  Identities=24%  Similarity=0.407  Sum_probs=71.3

Q ss_pred             CCCeeeee-cCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCC----CC--cEE-------EEEcCCEEEEEEcccC
Q psy16863        348 DAPAFIRR-LHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEE----NK--IYR-------TQHDGNFYFIDLSSVS  413 (1075)
Q Consensus       348 ~~p~~~~~-~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~----~~--~~~-------~~~~g~~~~L~I~~v~  413 (1075)
                      .+|.|... +.++.+.+|++++|.|.+.|.|.|.|.|+|++.....    ..  ...       ...+.....|.|.++.
T Consensus         3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   82 (109)
T d2fdbp2           3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT   82 (109)
T ss_dssp             SCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCC
T ss_pred             CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCC
Confidence            46777665 5789999999999999999999999999998754321    11  111       1122234679999999


Q ss_pred             CCCceeEEEEEEeCCCceeeEEEEEee
Q psy16863        414 LFDSGRWTCLAENAVGRSHCSCELSVL  440 (1075)
Q Consensus       414 ~~d~G~Y~C~a~n~~g~~~~s~~l~V~  440 (1075)
                      .+|+|.|+|.|.|..|...+++.|+|.
T Consensus        83 ~~D~G~Y~C~a~N~~G~~~~~~~L~Vl  109 (109)
T d2fdbp2          83 FEDAGEYTCLAGNSIGISFHSAWLTVL  109 (109)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             HHHCeEEEEEEEECCCEEEEEEEEEEC
Confidence            999999999999999999999988873

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.5e-12  Score=111.16  Aligned_cols=90  Identities=16%  Similarity=0.183  Sum_probs=69.5

Q ss_pred             CeEEeccc-eeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEE---ee--------CcEEEEEEccccCCC
Q psy16863        749 PKFIEGLK-SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILK---ET--------LGVCHLKIHALEVAD  816 (1075)
Q Consensus       749 p~~~~~~~-~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~---~~--------~~~~~L~I~~~~~~D  816 (1075)
                      |.|+.+.. ...+..|+++.|.|.+.|.|.|.+.|++||..+..........   ..        .....|.|.+++.+|
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   81 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF   81 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHH
Confidence            55555443 3568889999999999999999999999999987654332211   00        014579999999999


Q ss_pred             Ce-EEEEEEEeCCceEEEEEEEE
Q psy16863        817 QA-EWKCIATNDFGQSITSCFLK  838 (1075)
Q Consensus       817 ~G-~Y~C~A~N~~G~~~~s~~l~  838 (1075)
                      .| +|+|.|.|.+|.+...+.|.
T Consensus        82 ~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          82 YKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GSSCEEEEEECSSCEEEEEEEEE
T ss_pred             CCcEEEEEEEeCCCeEEEEEEEE
Confidence            99 59999999999987766554

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.8e-14  Score=122.71  Aligned_cols=94  Identities=20%  Similarity=0.302  Sum_probs=70.7

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEE-ecCCCCeEEEEECCEEeecCCcEEEEEee------CcEEEEEEccccCCCCeEE
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQV-SISPEPKVSWFRDDQQVVESDNVKILKET------LGVCHLKIHALEVADQAEW  820 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v-~g~p~p~v~W~k~g~~i~~~~~~~~~~~~------~~~~~L~I~~~~~~D~G~Y  820 (1075)
                      ||.+........+.+|+.++|.|.+ .|.|.|.+.|+|+|..+....++......      .....|.|.+++.+|+|.|
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y   81 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY   81 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCE
T ss_pred             CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEE
Confidence            3433333344568899999999998 58999999999999988765433321111      1134799999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEEe
Q psy16863        821 KCIATNDFGQSITSCFLKLNV  841 (1075)
Q Consensus       821 ~C~A~N~~G~~~~s~~l~V~~  841 (1075)
                      +|.|+|.+|++..++.+.|.+
T Consensus        82 ~C~a~N~~G~~~~s~~v~v~v  102 (104)
T d1nbqa2          82 SCEARNGYGTPMTSNAVRMEA  102 (104)
T ss_dssp             EEEEECSSSCCEECCCBCCEE
T ss_pred             EEEEEECCCceEEEEEEEEEE
Confidence            999999999998877666654

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=3.1e-12  Score=108.69  Aligned_cols=90  Identities=17%  Similarity=0.307  Sum_probs=74.7

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCC
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAV  428 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~  428 (1075)
                      +|.+  .+.+..+.+|++++|.|.+.+ +++.|.|+|+|..|..+.++.+..++.  .|.|.+++.+|+|.|+|.|.|..
T Consensus         5 ~P~i--~~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~--~L~I~~v~~~d~G~Y~C~a~N~~   79 (96)
T d1l6za2           5 QPFL--QVTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNNS--ILRIDPIKREDAGEYQCEISNPV   79 (96)
T ss_dssp             CCCE--ECSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTTT--EEEECSCCGGGCEEEEEEEESSS
T ss_pred             CCeE--EcCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCce--EEEEeccchhhceEEEEEEEeCC
Confidence            4544  356788999999999999865 568999999999999888887766554  58999999999999999999999


Q ss_pred             Ccee-eEEEEEeecCC
Q psy16863        429 GRSH-CSCELSVLVPK  443 (1075)
Q Consensus       429 g~~~-~s~~l~V~~~~  443 (1075)
                      |... ..+.|+|..+|
T Consensus        80 g~~~S~~~~L~V~~~P   95 (96)
T d1l6za2          80 SVRRSNSIKLDIIFDP   95 (96)
T ss_dssp             CCEECCCCEEEECCSC
T ss_pred             CCeEEEeEEEEEEcCC
Confidence            8774 46788887665

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=7.6e-12  Score=108.21  Aligned_cols=93  Identities=17%  Similarity=0.313  Sum_probs=73.5

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEE--EcC--CEEEEEEcccCCCCceeEEEE
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQ--HDG--NFYFIDLSSVSLFDSGRWTCL  423 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~--~~g--~~~~L~I~~v~~~d~G~Y~C~  423 (1075)
                      .||.++....   ...+....|.|.+.|.|.|.|+|+|||++|..+.++.+.  .++  ..+.|.|.+++.+|+|.|+|.
T Consensus         4 ~PP~i~~~~~---~~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (105)
T d1wwca_           4 YPPRVVSLEE---PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLI   80 (105)
T ss_dssp             CCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEE
T ss_pred             cCCeeEEeCC---CEEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEE
Confidence            4777765332   234556678889999999999999999999887765443  233  235799999999999999999


Q ss_pred             EEeCCCceeeEEEEEeecCC
Q psy16863        424 AENAVGRSHCSCELSVLVPK  443 (1075)
Q Consensus       424 a~n~~g~~~~s~~l~V~~~~  443 (1075)
                      |+|..|..++++.|.|..+|
T Consensus        81 a~N~~G~~~~~~~v~V~~~P  100 (105)
T d1wwca_          81 AKNPLGTANQTINGHFLKEP  100 (105)
T ss_dssp             EEETTEEEEEEEEECCSCCC
T ss_pred             EEcCCCEEEEEEEEEEEeCC
Confidence            99999999988888887665

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.3e-12  Score=115.29  Aligned_cols=93  Identities=16%  Similarity=0.289  Sum_probs=74.3

Q ss_pred             eeeecCceeeccCCeEEEEEEEecCC---CcEEEEEECCEec---CCCCcEEEEE------cCCEEEEEEcccCCCCcee
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIRSPT---EIKIHWYRNDRKL---EENKIYRTQH------DGNFYFIDLSSVSLFDSGR  419 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~g~p---~~~v~W~k~g~~l---~~~~~~~~~~------~g~~~~L~I~~v~~~d~G~  419 (1075)
                      |+..|.++.+.+|++++|.|.+.|.|   .|.|.|+|++...   ....++.+..      ....+.|.|.++..+|+|.
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   82 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN   82 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEE
T ss_pred             EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeE
Confidence            66778899999999999999999987   5799999997543   1233333221      1224579999999999999


Q ss_pred             EEEEEEeCCCceeeEEEEEeecCCC
Q psy16863        420 WTCLAENAVGRSHCSCELSVLVPKA  444 (1075)
Q Consensus       420 Y~C~a~n~~g~~~~s~~l~V~~~~~  444 (1075)
                      |+|.|+|..|..++++.|.|..++.
T Consensus        83 Y~C~a~N~~G~~~~~~~L~V~~~~~  107 (113)
T d2dava1          83 YRCEVTYKDKFDSCSFDLEVHESTG  107 (113)
T ss_dssp             EEEEEECSSCEEEECCEEEEECCCC
T ss_pred             EEEEEEeCCCEEEEEEEEEEEcCCC
Confidence            9999999999999999999976653

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.30  E-value=1.1e-12  Score=111.72  Aligned_cols=88  Identities=20%  Similarity=0.284  Sum_probs=70.5

Q ss_pred             CCeeeeecCceeeccC---CeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEE
Q psy16863        349 APAFIRRLHDIAVKVG---TRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAE  425 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G---~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~  425 (1075)
                      +|.|+..+.+..+.+|   ++++|.|.+.|.|.+.++|+|||..+..+....+...+. ..|.|..+..+|+|.|+|.|+
T Consensus         4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~a~   82 (97)
T d1cs6a1           4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG-DLVISNPVKAKDAGSYQCVAT   82 (97)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETT-EEEEESCCHHHHCEEEEEEEE
T ss_pred             CCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeee-eEEEEecccccCCEEEEEEEE
Confidence            6888888888887766   799999999999999999999999997654433333333 357889899999999999999


Q ss_pred             eCCCcee-eEEEE
Q psy16863        426 NAVGRSH-CSCEL  437 (1075)
Q Consensus       426 n~~g~~~-~s~~l  437 (1075)
                      |..|... .++.|
T Consensus        83 N~~G~~~S~~a~L   95 (97)
T d1cs6a1          83 NARGTVVSREASL   95 (97)
T ss_dssp             ETTEEEECCCEEE
T ss_pred             ECCCEEEEEEEEE
Confidence            9999763 34554

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=4.9e-13  Score=109.17  Aligned_cols=74  Identities=11%  Similarity=0.101  Sum_probs=63.6

Q ss_pred             cCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEE
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC  435 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~  435 (1075)
                      +.+..+.+|+.+.|.|.+.|.|.|+|+|+|||..+....             .+.+++.+|+|.|+|.|+|..|..+..+
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~-------------~~~~v~~~d~G~Y~C~A~N~~G~~~~~~   77 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG-------------ESVTVTRDLEGTYLCRARSTQGEVTREV   77 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT-------------SCEECCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeee-------------eeeccccCCCCEEEEEEEcCCCEEEEEE
Confidence            467889999999999999999999999999998775433             2456788999999999999999998888


Q ss_pred             EEEeecC
Q psy16863        436 ELSVLVP  442 (1075)
Q Consensus       436 ~l~V~~~  442 (1075)
                      .|.|..|
T Consensus        78 ~l~V~~P   84 (84)
T d2oz4a3          78 TVNVLSP   84 (84)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            8888654

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.30  E-value=2.8e-12  Score=106.37  Aligned_cols=76  Identities=12%  Similarity=0.204  Sum_probs=61.0

Q ss_pred             eeeecCCeEEEEEEEec-CCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEE-EE
Q psy16863        758 CQATVNEEFKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT-SC  835 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g-~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~-s~  835 (1075)
                      ..+.+|++++|.|.+.+ .|.+.+.|||||+.+....         ....|.|.+++.+|+|.|+|.|.|..|...+ .+
T Consensus        10 ~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~---------~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v   80 (88)
T d2fcba2          10 LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSR---------SDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPV   80 (88)
T ss_dssp             SEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEES---------SCCEEEETTCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred             CeEecCCeEEEEEEecCCCCCcEEEEEeecccccccc---------cccccccCccCHHHCCeEEEEEEeCCCCEEeeeE
Confidence            34789999999999975 4667999999999875432         1236999999999999999999999997643 56


Q ss_pred             EEEEEec
Q psy16863        836 FLKLNVP  842 (1075)
Q Consensus       836 ~l~V~~~  842 (1075)
                      .|.|+.|
T Consensus        81 ~l~V~~P   87 (88)
T d2fcba2          81 TITVQAP   87 (88)
T ss_dssp             EEEECCC
T ss_pred             EEEEeCC
Confidence            7777654

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6e-12  Score=109.00  Aligned_cols=89  Identities=15%  Similarity=0.200  Sum_probs=70.6

Q ss_pred             CceeeccCCeEEE---EEEEecCCCcEEEEEECCEecCCCCcEEEEEcC-------CEEEEEEcccCCCCceeEEEEEEe
Q psy16863        357 HDIAVKVGTRARL---LVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDG-------NFYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       357 ~~~~v~~G~~v~l---~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g-------~~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      .++.+.+|....+   .|.+.|.|.|.|+|+|||.+|..+.+.......       ....|.|.++..+|+|.|+|.|+|
T Consensus         5 ~~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N   84 (107)
T d1he7a_           5 ASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAAN   84 (107)
T ss_dssp             CCCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEE
T ss_pred             CEeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEe
Confidence            4455555655554   558899999999999999999877765543211       235799999999999999999999


Q ss_pred             CCCceeeEEEEEeecCCCC
Q psy16863        427 AVGRSHCSCELSVLVPKAY  445 (1075)
Q Consensus       427 ~~g~~~~s~~l~V~~~~~~  445 (1075)
                      ..|...+++.|.|..+|..
T Consensus        85 ~~G~~~~~i~v~v~~~P~~  103 (107)
T d1he7a_          85 PFGQASASIMAAFMDNPFE  103 (107)
T ss_dssp             TTEEEEEEEEECCCSCTTS
T ss_pred             CCCEEEEEEEEEEEcCCCC
Confidence            9999999999988877643

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.7e-12  Score=108.28  Aligned_cols=91  Identities=19%  Similarity=0.256  Sum_probs=68.3

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEE---CCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEE
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYR---NDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAE  425 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k---~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~  425 (1075)
                      .|.|. .+.++.+.+|+++.|.|.+.|.|.|.+.|++   ++..+.......+...+....|.|.++..+|+|.|+|.|.
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   80 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR   80 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEE
Confidence            68887 4899999999999999999998877555433   3333333333334444445679999999999999999999


Q ss_pred             eCCCcee-eEEEEEee
Q psy16863        426 NAVGRSH-CSCELSVL  440 (1075)
Q Consensus       426 n~~g~~~-~s~~l~V~  440 (1075)
                      |..|... ..+.|.|+
T Consensus        81 N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          81 TEGGVGISNYAELVVK   96 (96)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             eCCCeEEEEEEEEEEC
Confidence            9999864 44677774

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.27  E-value=3.3e-12  Score=108.19  Aligned_cols=86  Identities=16%  Similarity=0.259  Sum_probs=70.7

Q ss_pred             CCeeeeeccceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEEC
Q psy16863        550 APIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATS  629 (1075)
Q Consensus       550 ~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  629 (1075)
                      .|.|...+.++.+.+|+.++|.|.+.+.|.|..+.|+++|..+...........+  ..+|.|.++..+|+|.|+|.|.|
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~--~~~L~i~~v~~~D~G~Y~C~a~N   79 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKD--EGSLVFLRPQASDEGHYQCFAET   79 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTT--SCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeeccc--ceEEEEeccChhcCeEEEEEEEe
Confidence            3667777888999999999999999999877689999999988765544433333  23799999999999999999999


Q ss_pred             CCCceeee
Q psy16863        630 SSGVKQFS  637 (1075)
Q Consensus       630 ~~g~~~~~  637 (1075)
                      ..|.....
T Consensus        80 ~~G~~~s~   87 (94)
T d1biha1          80 PAGVASSR   87 (94)
T ss_dssp             TTEEEECC
T ss_pred             CCCEEEEE
Confidence            99976543

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=4.8e-13  Score=118.69  Aligned_cols=96  Identities=18%  Similarity=0.252  Sum_probs=75.3

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecC-CCCeEEEEECCEEeecC--CcEEEEEee--C-cEEEEEEccccCCC-CeE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSIS-PEPKVSWFRDDQQVVES--DNVKILKET--L-GVCHLKIHALEVAD-QAE  819 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~-p~p~v~W~k~g~~i~~~--~~~~~~~~~--~-~~~~L~I~~~~~~D-~G~  819 (1075)
                      .||.|. .++...+.+|+.+.|.|.+.|. |.+.+.|++++..+..+  .++.+....  . ..+.|.|.+++.+| +|.
T Consensus         6 ~Pp~i~-~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~   84 (115)
T d2crya1           6 GPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTI   84 (115)
T ss_dssp             SSCCEE-EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSC
T ss_pred             cCCEEe-cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeE
Confidence            577664 5667788999999999999985 45689999999988654  344443322  1 13579999999999 799


Q ss_pred             EEEEEEeCCceEEEEEEEEEEecC
Q psy16863        820 WKCIATNDFGQSITSCFLKLNVPK  843 (1075)
Q Consensus       820 Y~C~A~N~~G~~~~s~~l~V~~~~  843 (1075)
                      |+|.|+|.+|.++.++.|.|..++
T Consensus        85 Y~C~A~N~~G~~~~~~~L~V~~~~  108 (115)
T d2crya1          85 YNCTAWNSFGSDTEIIRLKEQGSE  108 (115)
T ss_dssp             EEEEEECSSCEEEEEECCCCSCSS
T ss_pred             EEEEEEECCCeEEEEEEEEEECCC
Confidence            999999999999888888776543

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3.5e-12  Score=106.61  Aligned_cols=88  Identities=20%  Similarity=0.232  Sum_probs=70.1

Q ss_pred             CCCCeeeeecCceeeccCCeEEEEEEEecCC-CcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEE
Q psy16863        347 PDAPAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAE  425 (1075)
Q Consensus       347 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p-~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~  425 (1075)
                      ..+|.+...+..+.+.+|++++|.|.+.+.| +++|+|+|+|..+..+.+..... +.  +|.|.+++.+|+|.|+|.|.
T Consensus         4 ~~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~-~~--~L~I~~v~~~D~G~Y~C~a~   80 (93)
T d1n26a1           4 RRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGM-GR--RLLLRSVQLHDSGNYSCYRA   80 (93)
T ss_dssp             SCCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEE-SS--EEEECSCCGGGCEEEEEESS
T ss_pred             CCCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecC-CC--EEEECCCChhcCEEEEEEEC
Confidence            4578888888889999999999999998765 46999999999997776654443 33  49999999999999999997


Q ss_pred             eCCCceeeEEEEEee
Q psy16863        426 NAVGRSHCSCELSVL  440 (1075)
Q Consensus       426 n~~g~~~~s~~l~V~  440 (1075)
                      |..+   .+..|.|.
T Consensus        81 n~~~---~t~~l~V~   92 (93)
T d1n26a1          81 GRPA---GTVHLLVD   92 (93)
T ss_dssp             SSCS---CEEEEEEC
T ss_pred             Cccc---cEEEEEEE
Confidence            6543   34456554

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=8.9e-13  Score=114.75  Aligned_cols=93  Identities=14%  Similarity=0.152  Sum_probs=68.2

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeC-------cEEEEEEccccCCCCeEE
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETL-------GVCHLKIHALEVADQAEW  820 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~-------~~~~L~I~~~~~~D~G~Y  820 (1075)
                      ++.+......+.+.+|+++.|.|.+.|.|.|.+.|+|++..+.....+.......       ....|.|.+++.+|+|.|
T Consensus         4 ~v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   83 (105)
T d1nbqa1           4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTY   83 (105)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEE
T ss_pred             ceEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeE
Confidence            3344444556779999999999999999999999999876554221110000000       012699999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEE
Q psy16863        821 KCIATNDFGQSITSCFLKLN  840 (1075)
Q Consensus       821 ~C~A~N~~G~~~~s~~l~V~  840 (1075)
                      +|.|.|..|.+...+.|+|.
T Consensus        84 ~C~a~n~~G~~~~~~~v~v~  103 (105)
T d1nbqa1          84 TCMVSEEGGNSYGEVKVKLI  103 (105)
T ss_dssp             EEEEEETTSSCEECCEEECC
T ss_pred             EEEEEECCCCEEEEEEEEEE
Confidence            99999999999887777664

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=7e-12  Score=108.31  Aligned_cols=92  Identities=15%  Similarity=0.269  Sum_probs=70.9

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCC-CcEEEEEECCEecCC---CCcEEEEEcC--CEEEEEEcccCCCCceeEEE
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPT-EIKIHWYRNDRKLEE---NKIYRTQHDG--NFYFIDLSSVSLFDSGRWTC  422 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p-~~~v~W~k~g~~l~~---~~~~~~~~~g--~~~~L~I~~v~~~d~G~Y~C  422 (1075)
                      .+.|++.+....+.+|+++.|.|.+.|.| .|.|+|+|++..+..   ........++  ....|.|.++..+|+|.|+|
T Consensus         3 ~~~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   82 (104)
T d2aw2a1           3 VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRC   82 (104)
T ss_dssp             CEECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEE
T ss_pred             ccEEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEE
Confidence            34566777888999999999999999988 589999999876532   2222233322  34579999999999999999


Q ss_pred             EEEeCCCcee-eEEEEEee
Q psy16863        423 LAENAVGRSH-CSCELSVL  440 (1075)
Q Consensus       423 ~a~n~~g~~~-~s~~l~V~  440 (1075)
                      .|.|..|... .++.|.|.
T Consensus        83 ~A~N~~G~~~s~~~~l~V~  101 (104)
T d2aw2a1          83 SANFQSNLIESHSTTLYVT  101 (104)
T ss_dssp             EEEETTEEEECCCEEEEEE
T ss_pred             EEEcCCCeEEEEEEEEEEE
Confidence            9999999754 46677664

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.24  E-value=7.5e-12  Score=103.87  Aligned_cols=74  Identities=7%  Similarity=0.093  Sum_probs=58.5

Q ss_pred             eeeecCCeEEEEEEEec-CCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEE-EE
Q psy16863        758 CQATVNEEFKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT-SC  835 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g-~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~-s~  835 (1075)
                      ..+.+|++++|.|.+.+ .|.+.+.|||||+.+....       .  ...|.|.+++.+|+|.|+|.|.|..|...+ .+
T Consensus        12 ~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~~-------~--~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v   82 (89)
T d1fnla2          12 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFH-------H--NSDFHIPKATLKDSGSYFCRGLVGSKNVSSETV   82 (89)
T ss_dssp             SEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEE-------E--CCCEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred             CeEccCCeEEEEEEecCCCCCcEEEEEEcccccceec-------c--ccccEECccceeccceEEEEEEeCCCCeEEeeE
Confidence            44789999999999975 4666899999998875321       1  126999999999999999999999987543 46


Q ss_pred             EEEEE
Q psy16863        836 FLKLN  840 (1075)
Q Consensus       836 ~l~V~  840 (1075)
                      .|+|+
T Consensus        83 ~itV~   87 (89)
T d1fnla2          83 NITIT   87 (89)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66665

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.24  E-value=2.7e-11  Score=102.93  Aligned_cols=88  Identities=19%  Similarity=0.365  Sum_probs=68.2

Q ss_pred             eccceEeecCCeEEEEEEEecCCCCceEEEEeCCe-EEe-cCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCc
Q psy16863        556 EVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEG-VVE-ASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGV  633 (1075)
Q Consensus       556 ~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~-~i~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  633 (1075)
                      .|....+.+|+++.|.|.+.+.|.+..+.|+++++ .+. .+.++.+.....+..+|.|.+++.+|+|.|+|.|.|..|.
T Consensus         6 ~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   85 (97)
T d1epfa1           6 VPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGT   85 (97)
T ss_dssp             ESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTE
T ss_pred             ECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCc
Confidence            45677899999999999999988544899999554 333 4456666655555678999999999999999999999997


Q ss_pred             eeeeeEEEEE
Q psy16863        634 KQFSAAYVHV  643 (1075)
Q Consensus       634 ~~~~~~~l~v  643 (1075)
                      .......|.|
T Consensus        86 ~~~~tv~l~V   95 (97)
T d1epfa1          86 QSEATVNVKI   95 (97)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            6544445544

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=8.2e-12  Score=103.72  Aligned_cols=77  Identities=9%  Similarity=0.003  Sum_probs=61.8

Q ss_pred             eeeecCCeEEEEEEEecC-CCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEE-EEE
Q psy16863        758 CQATVNEEFKFTVQVSIS-PEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSI-TSC  835 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~-p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~-~s~  835 (1075)
                      ..+.+|++++|.|.+.+. |.+.+.|||||+.+.....         ...|.|.+++.+|+|.|+|.|.|..|... ..+
T Consensus        10 ~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~~---------~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v   80 (89)
T d1f2qa2          10 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE---------NHNISITNATVEDSGTYYCTGKVWQLDYESEPL   80 (89)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCC---------SSEEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred             CeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccccc---------cceEEEeeeeeecCcEEEEEEEeCCCCeEeeeE
Confidence            457899999999999765 5669999999998864321         12699999999999999999999988654 356


Q ss_pred             EEEEEecC
Q psy16863        836 FLKLNVPK  843 (1075)
Q Consensus       836 ~l~V~~~~  843 (1075)
                      .|.|..+|
T Consensus        81 ~i~V~~~P   88 (89)
T d1f2qa2          81 NITVIKAP   88 (89)
T ss_dssp             EEEEECSC
T ss_pred             EEEEEeCC
Confidence            77777654

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=6.8e-12  Score=109.95  Aligned_cols=83  Identities=20%  Similarity=0.289  Sum_probs=62.2

Q ss_pred             ceeeccCCeEEEEEEE-ecCCCcEEEEEECCEecCCCCcEE--------EEEcCCEEEEEEcccCCCCceeEEEEEEeCC
Q psy16863        358 DIAVKVGTRARLLVEI-RSPTEIKIHWYRNDRKLEENKIYR--------TQHDGNFYFIDLSSVSLFDSGRWTCLAENAV  428 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~--------~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~  428 (1075)
                      ...+.+|+++.|.|.+ .|.|.+.|+|+|+|..+.......        .........|.|.+++.+|+|.|+|.|+|..
T Consensus        11 ~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~   90 (110)
T d1f97a2          11 PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGY   90 (110)
T ss_dssp             CSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSS
T ss_pred             CCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECC
Confidence            4578899999999998 479999999999999886543322        1222233468999999999999999999999


Q ss_pred             CceeeEEEEEee
Q psy16863        429 GRSHCSCELSVL  440 (1075)
Q Consensus       429 g~~~~s~~l~V~  440 (1075)
                      |....+..+.+.
T Consensus        91 G~~~~s~~v~l~  102 (110)
T d1f97a2          91 GTAMRSEAAHMD  102 (110)
T ss_dssp             SCCEECCCEEEE
T ss_pred             CcEEEEEEEEEE
Confidence            987665444443

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=3.2e-12  Score=110.22  Aligned_cols=88  Identities=20%  Similarity=0.325  Sum_probs=67.7

Q ss_pred             CeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeec------------CCcEEEEEeeCcEEEEEEccccCCC
Q psy16863        749 PKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVE------------SDNVKILKETLGVCHLKIHALEVAD  816 (1075)
Q Consensus       749 p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~------------~~~~~~~~~~~~~~~L~I~~~~~~D  816 (1075)
                      |.+.....+..+.+|+++.|.|.+.|.|.|.|.|+|++..+..            ..+...   ..  ..|.|.+++.+|
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~tL~I~~v~~~D   76 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF---SS--SGITFSSVTRKD   76 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEE---ET--TEEEESCCCGGG
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEe---cC--CEEEEeECCccC
Confidence            3445556677899999999999999999999999986543211            111111   11  269999999999


Q ss_pred             CeEEEEEEEeCCceEEEEEEEEEEe
Q psy16863        817 QAEWKCIATNDFGQSITSCFLKLNV  841 (1075)
Q Consensus       817 ~G~Y~C~A~N~~G~~~~s~~l~V~~  841 (1075)
                      +|.|+|.|.|..|....++.+.|.+
T Consensus        77 ~G~Y~C~a~n~~g~~~~~~~v~v~V  101 (102)
T d1f97a1          77 NGEYTCMVSEEGGQNYGEVSIHLTV  101 (102)
T ss_dssp             CEEEEEEEEETTSSSEEEEEEEEEE
T ss_pred             CEEEEEEEEECCCCEEEEEEEEEEE
Confidence            9999999999999988887777764

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.1e-12  Score=113.98  Aligned_cols=93  Identities=16%  Similarity=0.226  Sum_probs=70.3

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEE-ecCCCcEEEEEECCEecCCCCcEEEEE-------cCCEEEEEEcccCCCCceeE
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEI-RSPTEIKIHWYRNDRKLEENKIYRTQH-------DGNFYFIDLSSVSLFDSGRW  420 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~-------~g~~~~L~I~~v~~~d~G~Y  420 (1075)
                      ||.+........+.+|+.++|.|.+ .|.|.+.+.|+|+|..+....++....       ......|.|.+++.+|+|.|
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y   81 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY   81 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCE
T ss_pred             CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEE
Confidence            4444444455678999999999998 579999999999999886554332211       11223688999999999999


Q ss_pred             EEEEEeCCCceeeEEEEEeec
Q psy16863        421 TCLAENAVGRSHCSCELSVLV  441 (1075)
Q Consensus       421 ~C~a~n~~g~~~~s~~l~V~~  441 (1075)
                      +|.|+|..|....++.+.|.+
T Consensus        82 ~C~a~N~~G~~~~s~~v~v~v  102 (104)
T d1nbqa2          82 SCEARNGYGTPMTSNAVRMEA  102 (104)
T ss_dssp             EEEEECSSSCCEECCCBCCEE
T ss_pred             EEEEEECCCceEEEEEEEEEE
Confidence            999999999988777666543

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1e-11  Score=105.62  Aligned_cols=73  Identities=11%  Similarity=0.163  Sum_probs=60.4

Q ss_pred             eeeecCCeEEEEE------EEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceE
Q psy16863        758 CQATVNEEFKFTV------QVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQS  831 (1075)
Q Consensus       758 ~~~~~g~~~~l~C------~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~  831 (1075)
                      +.+..|....|.|      .+.++|.|.|+|+|||++|..+.+.....  .+  .|.|.+++.+|+|.|+|.|.|..|..
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~--~~--~L~I~~v~~~D~G~Y~C~a~n~~~g~   84 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV--KD--RLIVMNVAEKHRGNYTCHASYTYLGK   84 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEE--TT--EEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEec--CC--EEEEcccccccCcEEEEEEEECcCCE
Confidence            4588999999999      67899999999999999998765544332  23  69999999999999999999988765


Q ss_pred             EEE
Q psy16863        832 ITS  834 (1075)
Q Consensus       832 ~~s  834 (1075)
                      ..+
T Consensus        85 ~~~   87 (103)
T d1iray2          85 QYP   87 (103)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.7e-12  Score=107.27  Aligned_cols=81  Identities=9%  Similarity=0.126  Sum_probs=64.5

Q ss_pred             cceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCC-cEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEE
Q psy16863        755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESD-NVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSIT  833 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~  833 (1075)
                      .++..+.+|+++.|.|.+.| |.|.+.|+++|+++.... ++.+.  .++  .|.|.+++++|+|.|+|.|.|..|....
T Consensus         4 ~~~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~--~~~--~L~I~~v~~~DsG~Y~C~A~n~~g~~~~   78 (92)
T d1olza1           4 YRQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLM--GRK--NLLIFNLSEGDSGVYQCLSEERVKNKTV   78 (92)
T ss_dssp             EEEEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCT--TTT--CEEECSCCGGGCEEEEEEEEEECSSSEE
T ss_pred             hhheeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecc--eee--EEEECCCCHHHCcEEEEEEEEcCCCEEE
Confidence            34567899999999999997 778999999999886543 33332  222  5999999999999999999999998766


Q ss_pred             EEEEEEE
Q psy16863        834 SCFLKLN  840 (1075)
Q Consensus       834 s~~l~V~  840 (1075)
                      +..|.+.
T Consensus        79 ~~~l~~~   85 (92)
T d1olza1          79 FQVVAKH   85 (92)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            6555443

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=6.4e-12  Score=107.52  Aligned_cols=92  Identities=13%  Similarity=0.164  Sum_probs=72.4

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEec-CCCC--eEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSI-SPEP--KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCI  823 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g-~p~p--~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~  823 (1075)
                      .||.+...+....+.+|+.++|+|.+.| .|.|  +++|+|+++.+......    .......|.|..+..+|+|.|+|+
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~----~~~~~s~l~i~~~~~dd~g~ytC~   78 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAV----GEPAEVTTTVLVRRDHHGAQFSCR   78 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC----TTTEEEEEEEECCSSCSSCEEEEE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccc----cccceEEEEEeeehhHCCCEEEEE
Confidence            4667776677777899999999999997 4655  68899999998653221    223456899999999999999999


Q ss_pred             EEeCCceEEEEEEEEEEec
Q psy16863        824 ATNDFGQSITSCFLKLNVP  842 (1075)
Q Consensus       824 A~N~~G~~~~s~~l~V~~~  842 (1075)
                      |+|.+|....+..+.+..|
T Consensus        79 A~n~~g~~~~~~~~~~s~p   97 (103)
T d1iama1          79 TELDLRPQGLELFENTSAP   97 (103)
T ss_dssp             EEEECGGGTSCEEEEECCC
T ss_pred             EEeCCCCccCeEeeeEcCC
Confidence            9999998777777776543

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.20  E-value=1.5e-11  Score=102.06  Aligned_cols=74  Identities=14%  Similarity=0.153  Sum_probs=58.6

Q ss_pred             eeecCCCeEEEEEEEEcc-CCCeeEEEECCEEcCCC-CeeEEEECCCCceeeEEEEEEEEeCCeeEE-EEEEEEEec
Q psy16863        856 AVLSEGGAVNLECKVIGV-PQPTLKWFKDGRELKAG-DIHKIISGEDGTCCLGIYTCEAHNCMGTTS-SSAALLGFE  929 (1075)
Q Consensus       856 ~~~~~g~~~~L~C~v~g~-p~p~v~W~k~g~~l~~~-~~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~-~~~~l~v~~  929 (1075)
                      ..+.+|++++|.|.+.+. |.+.++|||||..+... ....+.+......|+|.|+|+|.|..|... ..+.|.|.|
T Consensus        12 ~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~itV~E   88 (89)
T d1fnla2          12 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ   88 (89)
T ss_dssp             SEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CeEccCCeEEEEEEecCCCCCcEEEEEEcccccceeccccccEECccceeccceEEEEEEeCCCCeEEeeEEEEEEe
Confidence            347799999999999754 55689999999988642 234566788888999999999999999765 356777754

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.19  E-value=4e-12  Score=109.79  Aligned_cols=77  Identities=18%  Similarity=0.210  Sum_probs=61.7

Q ss_pred             ceeeeecCCeEEEEEEE-ecCCCCeEEEEECCEEeecCC--cEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEE
Q psy16863        756 KSCQATVNEEFKFTVQV-SISPEPKVSWFRDDQQVVESD--NVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSI  832 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v-~g~p~p~v~W~k~g~~i~~~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~  832 (1075)
                      ..+.+.+|+++.|.|.+ .|.|.|.|+|+|||.++....  +.... ...  ..|.|.+++.+|+|.|+|.|.|..|...
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~-~~~--~~L~I~~v~~~D~G~Y~C~a~N~~g~~~   88 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVS-QTT--GNLYIAKTEASDLGNYSCFATSHIDFIT   88 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEEC-TTT--CCEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             CCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeee-cCC--CEEeecccccccCcEEEEEEEECCCCEE
Confidence            45779999999999997 688999999999998765433  23222 222  3699999999999999999999999876


Q ss_pred             EEE
Q psy16863        833 TSC  835 (1075)
Q Consensus       833 ~s~  835 (1075)
                      .+.
T Consensus        89 ~~v   91 (105)
T d1cs6a2          89 KSV   91 (105)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            653

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.17  E-value=3.1e-11  Score=99.84  Aligned_cols=80  Identities=11%  Similarity=0.211  Sum_probs=62.4

Q ss_pred             cceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceeee
Q psy16863        558 ENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQFS  637 (1075)
Q Consensus       558 ~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  637 (1075)
                      ....+.+|++++|.|.+.+.+++..+.|||++..+....         ....|.|.+++.+|+|.|+|.|.|..|...+.
T Consensus         8 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~---------~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~   78 (88)
T d2fcba2           8 PHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSR---------SDPNFSIPQANHSHSGDYHCTGNIGYTLYSSK   78 (88)
T ss_dssp             SCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEES---------SCCEEEETTCCGGGCEEEEEEEEETTEEEECC
T ss_pred             CCCeEecCCeEEEEEEecCCCCCcEEEEEeecccccccc---------cccccccCccCHHHCCeEEEEEEeCCCCEEee
Confidence            345578999999999998665555899999998764321         12379999999999999999999998876555


Q ss_pred             eEEEEEeCC
Q psy16863        638 AAYVHVLMP  646 (1075)
Q Consensus       638 ~~~l~v~~p  646 (1075)
                      ...|.|..|
T Consensus        79 ~v~l~V~~P   87 (88)
T d2fcba2          79 PVTITVQAP   87 (88)
T ss_dssp             CEEEEECCC
T ss_pred             eEEEEEeCC
Confidence            566777654

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1e-10  Score=101.63  Aligned_cols=89  Identities=16%  Similarity=0.287  Sum_probs=68.5

Q ss_pred             Ceeeeec-CceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEE----EcC--------CEEEEEEcccCCCC
Q psy16863        350 PAFIRRL-HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQ----HDG--------NFYFIDLSSVSLFD  416 (1075)
Q Consensus       350 p~~~~~~-~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~----~~g--------~~~~L~I~~v~~~d  416 (1075)
                      |.|+.+. ..+.+..|+++.|.|.+.|.|.+.|.|++||..+.........    ...        ....|.|.+++.+|
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   81 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF   81 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHH
Confidence            5565544 3467889999999999999999999999999988655322111    110        13579999999999


Q ss_pred             ce-eEEEEEEeCCCceeeEEEEE
Q psy16863        417 SG-RWTCLAENAVGRSHCSCELS  438 (1075)
Q Consensus       417 ~G-~Y~C~a~n~~g~~~~s~~l~  438 (1075)
                      .| .|+|.|+|..|.....+.|.
T Consensus        82 ~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          82 YKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GSSCEEEEEECSSCEEEEEEEEE
T ss_pred             CCcEEEEEEEeCCCeEEEEEEEE
Confidence            99 59999999999887766654

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=8.7e-12  Score=108.29  Aligned_cols=91  Identities=14%  Similarity=0.218  Sum_probs=68.6

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEE--E--------EEcCCEEEEEEcccCCCCce
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYR--T--------QHDGNFYFIDLSSVSLFDSG  418 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~--~--------~~~g~~~~L~I~~v~~~d~G  418 (1075)
                      .+.+...++.+.+.+|+++.|.|.+.|.|.|.|.|+|++..+.......  .        ...+  ..|.|.+++.+|+|
T Consensus         4 ~v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~L~I~~v~~~D~G   81 (105)
T d1nbqa1           4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP--TGITFKSVTREDTG   81 (105)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET--TEEECSCCCTTSCS
T ss_pred             ceEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecC--ceEEEeccccccee
Confidence            3444445567889999999999999999999999999876543211110  0        0111  25899999999999


Q ss_pred             eEEEEEEeCCCceeeEEEEEeec
Q psy16863        419 RWTCLAENAVGRSHCSCELSVLV  441 (1075)
Q Consensus       419 ~Y~C~a~n~~g~~~~s~~l~V~~  441 (1075)
                      .|+|.|.|..|.....+.|+|.+
T Consensus        82 ~Y~C~a~n~~G~~~~~~~v~v~V  104 (105)
T d1nbqa1          82 TYTCMVSEEGGNSYGEVKVKLIV  104 (105)
T ss_dssp             EEEEEEEETTSSCEECCEEECCE
T ss_pred             eEEEEEEECCCCEEEEEEEEEEE
Confidence            99999999999998777777654

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=3.7e-12  Score=112.85  Aligned_cols=94  Identities=19%  Similarity=0.274  Sum_probs=74.3

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecC-CCcEEEEEECCEecCCC--CcEEEE----EcCCEEEEEEcccCCCC-ceeE
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSP-TEIKIHWYRNDRKLEEN--KIYRTQ----HDGNFYFIDLSSVSLFD-SGRW  420 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p~~~v~W~k~g~~l~~~--~~~~~~----~~g~~~~L~I~~v~~~d-~G~Y  420 (1075)
                      ||.+. .+..+.+.+|+.+.|.|.+.+. |.+.+.|++++..+..+  .++.+.    .++..+.|.|.++..+| +|.|
T Consensus         7 Pp~i~-~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y   85 (115)
T d2crya1           7 PPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIY   85 (115)
T ss_dssp             SCCEE-EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCE
T ss_pred             CCEEe-cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeEE
Confidence            66654 5677889999999999999884 56789999999988654  333332    22334679999999999 7999


Q ss_pred             EEEEEeCCCceeeEEEEEeecCC
Q psy16863        421 TCLAENAVGRSHCSCELSVLVPK  443 (1075)
Q Consensus       421 ~C~a~n~~g~~~~s~~l~V~~~~  443 (1075)
                      +|.|+|..|..+.++.|.|...+
T Consensus        86 ~C~A~N~~G~~~~~~~L~V~~~~  108 (115)
T d2crya1          86 NCTAWNSFGSDTEIIRLKEQGSE  108 (115)
T ss_dssp             EEEEECSSCEEEEEECCCCSCSS
T ss_pred             EEEEEECCCeEEEEEEEEEECCC
Confidence            99999999999888888776544

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=5.8e-11  Score=98.45  Aligned_cols=82  Identities=12%  Similarity=0.105  Sum_probs=65.3

Q ss_pred             ccceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEECCCCceee
Q psy16863        557 VENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVATSSSGVKQF  636 (1075)
Q Consensus       557 ~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  636 (1075)
                      +....+.+|++++|.|.+.+.+.+..+.|||+|..+.....         ...|.|.+++.+|+|.|+|.|.|..|...+
T Consensus         7 ~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~~---------~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S   77 (89)
T d1f2qa2           7 ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE---------NHNISITNATVEDSGTYYCTGKVWQLDYES   77 (89)
T ss_dssp             ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCC---------SSEEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccccc---------cceEEEeeeeeecCcEEEEEEEeCCCCeEe
Confidence            34456889999999999988766679999999987753321         237999999999999999999998887665


Q ss_pred             eeEEEEEeCCC
Q psy16863        637 SAAYVHVLMPK  647 (1075)
Q Consensus       637 ~~~~l~v~~p~  647 (1075)
                      ....|.|..+|
T Consensus        78 ~~v~i~V~~~P   88 (89)
T d1f2qa2          78 EPLNITVIKAP   88 (89)
T ss_dssp             CCEEEEEECSC
T ss_pred             eeEEEEEEeCC
Confidence            55677777654

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.12  E-value=9.2e-12  Score=107.43  Aligned_cols=78  Identities=10%  Similarity=0.087  Sum_probs=61.4

Q ss_pred             ecCceeeccCCeEEEEEEE-ecCCCcEEEEEECCEecCC--CCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCce
Q psy16863        355 RLHDIAVKVGTRARLLVEI-RSPTEIKIHWYRNDRKLEE--NKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS  431 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~-~g~p~~~v~W~k~g~~l~~--~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~  431 (1075)
                      ....+.+.+|+++.|.|.+ .+.|.+.|+|+|||..+..  ..+.......  ..|.|.+++.+|+|.|+|.|+|..|..
T Consensus        10 ~~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~N~~g~~   87 (105)
T d1cs6a2          10 ERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTT--GNLYIAKTEASDLGNYSCFATSHIDFI   87 (105)
T ss_dssp             CCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTT--CCEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred             CCCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCC--CEEeecccccccCcEEEEEEEECCCCE
Confidence            3456789999999999997 6888999999999977643  2333332222  248999999999999999999998887


Q ss_pred             eeE
Q psy16863        432 HCS  434 (1075)
Q Consensus       432 ~~s  434 (1075)
                      ..+
T Consensus        88 ~~~   90 (105)
T d1cs6a2          88 TKS   90 (105)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=9.6e-11  Score=100.71  Aligned_cols=88  Identities=16%  Similarity=0.217  Sum_probs=67.9

Q ss_pred             CeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCC------------CCcEEEEEcCCEEEEEEcccCCCCc
Q psy16863        350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEE------------NKIYRTQHDGNFYFIDLSSVSLFDS  417 (1075)
Q Consensus       350 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~------------~~~~~~~~~g~~~~L~I~~v~~~d~  417 (1075)
                      |.+......+.+.+|+++.|.|.+.|.|.+.|.|+|++..+..            ..+...  .+  .+|.|.+++.+|+
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~tL~I~~v~~~D~   77 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF--SS--SGITFSSVTRKDN   77 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEE--ET--TEEEESCCCGGGC
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEe--cC--CEEEEeECCccCC
Confidence            4556666778999999999999999999999999996643211            011111  11  1599999999999


Q ss_pred             eeEEEEEEeCCCceeeEEEEEeec
Q psy16863        418 GRWTCLAENAVGRSHCSCELSVLV  441 (1075)
Q Consensus       418 G~Y~C~a~n~~g~~~~s~~l~V~~  441 (1075)
                      |.|+|.|.|..|....+..++|.|
T Consensus        78 G~Y~C~a~n~~g~~~~~~~v~v~V  101 (102)
T d1f97a1          78 GEYTCMVSEEGGQNYGEVSIHLTV  101 (102)
T ss_dssp             EEEEEEEEETTSSSEEEEEEEEEE
T ss_pred             EEEEEEEEECCCCEEEEEEEEEEE
Confidence            999999999999988777777654

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=7e-11  Score=100.48  Aligned_cols=81  Identities=16%  Similarity=0.189  Sum_probs=65.7

Q ss_pred             eeeecCCeEEEEEEEe-cCCCCeEEEEECCEEeecC--CcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEEEE
Q psy16863        758 CQATVNEEFKFTVQVS-ISPEPKVSWFRDDQQVVES--DNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSITS  834 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~-g~p~p~v~W~k~g~~i~~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~s  834 (1075)
                      ..+.+|+.+.|.|.+. +.|.++|+|+|+|..+...  ....+... .+  .|.|.+++.+|+|.|+|.|.|..|....+
T Consensus        12 ~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~-~~--~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   88 (101)
T d1iray1          12 LVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH-KE--KLWFVPAKVEDSGHYYCVVRNSSYCLRIK   88 (101)
T ss_dssp             EEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEE-TT--EEEETTCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             EEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEecc-CC--EEEeccceecCCEEEEEEEECCCCeEEEE
Confidence            4577899999999886 6789999999998765422  23333322 22  79999999999999999999999999999


Q ss_pred             EEEEEEe
Q psy16863        835 CFLKLNV  841 (1075)
Q Consensus       835 ~~l~V~~  841 (1075)
                      +.|.|..
T Consensus        89 ~~L~V~~   95 (101)
T d1iray1          89 ISAKFVE   95 (101)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            9999875

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.5e-11  Score=106.08  Aligned_cols=88  Identities=15%  Similarity=0.153  Sum_probs=63.5

Q ss_pred             eccceeeeecCCeEEEEEEEec-C--CCCeEEEEECCEEeecCCcEEEEE-eeCcEEEEEEccccCCCCeEEEEEEEeCC
Q psy16863        753 EGLKSCQATVNEEFKFTVQVSI-S--PEPKVSWFRDDQQVVESDNVKILK-ETLGVCHLKIHALEVADQAEWKCIATNDF  828 (1075)
Q Consensus       753 ~~~~~~~~~~g~~~~l~C~v~g-~--p~p~v~W~k~g~~i~~~~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~  828 (1075)
                      ..+....+.+|+.++|+|.+.| .  |.++|+|||||++|.......... .......|.|.....+|.|.|+|+|.|++
T Consensus         7 i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~   86 (106)
T d1zxqa1           7 LTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDL   86 (106)
T ss_dssp             EEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEEC
T ss_pred             ecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecC
Confidence            3455567889999999999997 3  455899999999986543222111 11234578888888999999999999999


Q ss_pred             ceEEEEEEEEEE
Q psy16863        829 GQSITSCFLKLN  840 (1075)
Q Consensus       829 G~~~~s~~l~V~  840 (1075)
                      |......++.+.
T Consensus        87 ~~~~~~~~~~~s   98 (106)
T d1zxqa1          87 MSRGGNIFHKHS   98 (106)
T ss_dssp             GGGTCCEEEEEC
T ss_pred             CCCCCeeEeccc
Confidence            875445555543

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=4e-11  Score=100.01  Aligned_cols=80  Identities=20%  Similarity=0.220  Sum_probs=63.3

Q ss_pred             CceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCC-cEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCceeeEE
Q psy16863        357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENK-IYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSHCSC  435 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~-~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~s~  435 (1075)
                      ....+.+|+++.|.|.+.| |.+.+.|+++|..+.... ++.+..++   .|.|.+++.+|+|.|+|.|.|..|....+.
T Consensus         5 ~~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~---~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~   80 (92)
T d1olza1           5 RQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRK---NLLIFNLSEGDSGVYQCLSEERVKNKTVFQ   80 (92)
T ss_dssp             EEEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTT---CEEECSCCGGGCEEEEEEEEEECSSSEEEE
T ss_pred             hheeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceee---EEEECCCCHHHCcEEEEEEEEcCCCEEEEE
Confidence            4567899999999999987 568999999999886543 33333344   389999999999999999999988776555


Q ss_pred             EEEee
Q psy16863        436 ELSVL  440 (1075)
Q Consensus       436 ~l~V~  440 (1075)
                      .|.+.
T Consensus        81 ~l~~~   85 (92)
T d1olza1          81 VVAKH   85 (92)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55443

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.7e-10  Score=98.50  Aligned_cols=91  Identities=9%  Similarity=0.062  Sum_probs=70.8

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEec-CCC--cEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEE
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRS-PTE--IKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAE  425 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g-~p~--~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~  425 (1075)
                      |+.+...+.+..+.+|+.++|.|.+.| .|.  +.++|+|++..|.....   ........|.|..+..+|.|.|+|+|+
T Consensus         4 P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~---~~~~~~s~l~i~~~~~dd~g~ytC~A~   80 (103)
T d1iama1           4 PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA---VGEPAEVTTTVLVRRDHHGAQFSCRTE   80 (103)
T ss_dssp             CSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC---CTTTEEEEEEEECCSSCSSCEEEEEEE
T ss_pred             CCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc---ccccceEEEEEeeehhHCCCEEEEEEE
Confidence            667766677788999999999999986 454  37899999998854211   122344578999999999999999999


Q ss_pred             eCCCceeeEEEEEeecC
Q psy16863        426 NAVGRSHCSCELSVLVP  442 (1075)
Q Consensus       426 n~~g~~~~s~~l~V~~~  442 (1075)
                      |..|....+..+.+..+
T Consensus        81 n~~g~~~~~~~~~~s~p   97 (103)
T d1iama1          81 LDLRPQGLELFENTSAP   97 (103)
T ss_dssp             EECGGGTSCEEEEECCC
T ss_pred             eCCCCccCeEeeeEcCC
Confidence            99998876776766544

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.06  E-value=1.7e-10  Score=94.47  Aligned_cols=74  Identities=16%  Similarity=0.262  Sum_probs=60.9

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCe-EEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPK-VSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT  825 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~-v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~  825 (1075)
                      .+|.+...+....+.+|++++|+|.+.|.|.+. +.|+|+|..+..+.           ..|.|.+++.+|+|.|+|.|.
T Consensus         4 Pkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~i~~~~~~d~G~Y~C~a~   72 (84)
T d1fnla1           4 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA-----------SSYFIDAATVNDSGEYRCQTN   72 (84)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSC-----------SEEEESSCCGGGCEEEEEECS
T ss_pred             CCCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeecc-----------eeeEecCCcccCCEEEEEEcc
Confidence            356777777788899999999999999998875 66789998775432           269999999999999999998


Q ss_pred             eCCceE
Q psy16863        826 NDFGQS  831 (1075)
Q Consensus       826 N~~G~~  831 (1075)
                      |..++.
T Consensus        73 ~s~~S~   78 (84)
T d1fnla1          73 LSTLSD   78 (84)
T ss_dssp             SSCCCC
T ss_pred             CCCccc
Confidence            876543

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.7e-10  Score=97.99  Aligned_cols=76  Identities=17%  Similarity=0.150  Sum_probs=62.7

Q ss_pred             eeecCCCeEEEEEEEE-ccCCCeeEEEECCEEcCCC---------CeeEEEECCCCceeeEEEEEEEEeCCeeEEEEEEE
Q psy16863        856 AVLSEGGAVNLECKVI-GVPQPTLKWFKDGRELKAG---------DIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAAL  925 (1075)
Q Consensus       856 ~~~~~g~~~~L~C~v~-g~p~p~v~W~k~g~~l~~~---------~~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l  925 (1075)
                      .++.+|+.+.|.|.+. +.|.++|+|||+|.++...         ....|.+......|+|.|+|.|.|..|....++.|
T Consensus        12 ~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~L   91 (101)
T d1iray1          12 LVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISA   91 (101)
T ss_dssp             EEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeEEEEEEE
Confidence            3466899999999986 6789999999998655321         12357778888899999999999999999999999


Q ss_pred             EEecCC
Q psy16863        926 LGFEDK  931 (1075)
Q Consensus       926 ~v~~~~  931 (1075)
                      .|++..
T Consensus        92 ~V~~~~   97 (101)
T d1iray1          92 KFVENE   97 (101)
T ss_dssp             EEECCC
T ss_pred             EEEeCC
Confidence            998654

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.4e-10  Score=98.53  Aligned_cols=73  Identities=16%  Similarity=0.219  Sum_probs=60.0

Q ss_pred             ceeeccCCeEEEEE------EEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCce
Q psy16863        358 DIAVKVGTRARLLV------EIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS  431 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C------~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~  431 (1075)
                      .+.+..|....|.|      .+.++|.|.|.|+|||++|..+.+.....++   .|.|.++..+|+|.|+|.|.|..|..
T Consensus         8 ~q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~n~~~g~   84 (103)
T d1iray2           8 KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD---RLIVMNVAEKHRGNYTCHASYTYLGK   84 (103)
T ss_dssp             EEEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETT---EEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred             EEEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCC---EEEEcccccccCcEEEEEEEECcCCE
Confidence            35788999999999      5678899999999999999876554444444   48999999999999999999987755


Q ss_pred             ee
Q psy16863        432 HC  433 (1075)
Q Consensus       432 ~~  433 (1075)
                      ..
T Consensus        85 ~~   86 (103)
T d1iray2          85 QY   86 (103)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.03  E-value=2.8e-10  Score=93.08  Aligned_cols=74  Identities=23%  Similarity=0.355  Sum_probs=61.7

Q ss_pred             CCCeeeeeccceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEE
Q psy16863        549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVAT  628 (1075)
Q Consensus       549 ~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  628 (1075)
                      |+|.+...|....+.+|++++|.|.+.+.|.+..+.|++++..+....           ..|.|.+++.+|+|.|+|.|.
T Consensus         4 Pkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~i~~~~~~d~G~Y~C~a~   72 (84)
T d1fnla1           4 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA-----------SSYFIDAATVNDSGEYRCQTN   72 (84)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSC-----------SEEEESSCCGGGCEEEEEECS
T ss_pred             CCCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeecc-----------eeeEecCCcccCCEEEEEEcc
Confidence            567777888888999999999999999998886788888887765322           279999999999999999998


Q ss_pred             CCCCc
Q psy16863        629 SSSGV  633 (1075)
Q Consensus       629 n~~g~  633 (1075)
                      |..++
T Consensus        73 ~s~~S   77 (84)
T d1fnla1          73 LSTLS   77 (84)
T ss_dssp             SSCCC
T ss_pred             CCCcc
Confidence            76543

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.01  E-value=2.2e-10  Score=94.08  Aligned_cols=80  Identities=18%  Similarity=0.171  Sum_probs=62.9

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecCCCc-EEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEe
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSPTEI-KIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      ..|.+...+....+.+|++++|.|.+.+.|.+ .+.|+|||..+..+..          .|.|.+++.+|+|.|+|+|.|
T Consensus         3 pkp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~~----------~l~i~~v~~~dsG~Y~C~a~n   72 (85)
T d2fcba1           3 PKAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQ----------PSYRFKANNNDSGEYTCQTGQ   72 (85)
T ss_dssp             CBCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTCCS----------SEEEEECCGGGCEEEEEECTT
T ss_pred             CCCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccccc----------ceEEeeccccCCcEEEEECCC
Confidence            35667667778899999999999999887754 7999999998865432          378899999999999999987


Q ss_pred             CCCceeeEEEEEe
Q psy16863        427 AVGRSHCSCELSV  439 (1075)
Q Consensus       427 ~~g~~~~s~~l~V  439 (1075)
                      ..++.  .+.|+|
T Consensus        73 s~~S~--~v~l~V   83 (85)
T d2fcba1          73 TSLSD--PVHLTV   83 (85)
T ss_dssp             SBCCC--CEEEEE
T ss_pred             Ccccc--cEEEEE
Confidence            65443  345555

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.4e-10  Score=94.40  Aligned_cols=78  Identities=19%  Similarity=0.264  Sum_probs=59.8

Q ss_pred             CeEEeccceeeeecCCeEEEEEEEecCCCC-eEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeC
Q psy16863        749 PKFIEGLKSCQATVNEEFKFTVQVSISPEP-KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND  827 (1075)
Q Consensus       749 p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p-~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~  827 (1075)
                      |.|...+....+.+|++++|.|.+.+.|.+ .+.|+|+|..+....           ..|.|.+++.+|+|.|+|.|.|.
T Consensus         2 P~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~i~~v~~~d~G~Y~C~a~~s   70 (82)
T d1f2qa1           2 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN-----------SSLNIVNAKFEDSGEYKCQHQQV   70 (82)
T ss_dssp             CCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCS-----------SEEEECSCCGGGCEEEEEECTTS
T ss_pred             CEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeeccc-----------ceeEECCCChhhCCcEEEEecCC
Confidence            556666667789999999999999999987 466789998876432           26999999999999999999987


Q ss_pred             CceEEEEEEEEE
Q psy16863        828 FGQSITSCFLKL  839 (1075)
Q Consensus       828 ~G~~~~s~~l~V  839 (1075)
                      .++.  .+.|.|
T Consensus        71 ~~S~--~v~l~V   80 (82)
T d1f2qa1          71 NESE--PVYLEV   80 (82)
T ss_dssp             SCCC--CEEEEE
T ss_pred             CCcc--cEEEEE
Confidence            6654  445555

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.99  E-value=3e-10  Score=93.23  Aligned_cols=74  Identities=19%  Similarity=0.294  Sum_probs=61.3

Q ss_pred             CCCeeeeeccceEeecCCeEEEEEEEecCCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEEEeeeeecCCceEEEEEE
Q psy16863        549 PAPIFIKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIEINYLEAVDDGEWKCVAT  628 (1075)
Q Consensus       549 ~~~~~~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  628 (1075)
                      |.|.+...+....+.+|+.++|.|.+.+.|.+..+.|++++..+....           ..|.|.+++.+|+|.|+|.|.
T Consensus         3 pkp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~-----------~~l~i~~v~~~dsG~Y~C~a~   71 (85)
T d2fcba1           3 PKAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHT-----------QPSYRFKANNNDSGEYTCQTG   71 (85)
T ss_dssp             CBCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTCC-----------SSEEEEECCGGGCEEEEEECT
T ss_pred             CCCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecccccccccc-----------cceEEeeccccCCcEEEEECC
Confidence            346677777888999999999999999988777899999998775332           168899999999999999998


Q ss_pred             CCCCc
Q psy16863        629 SSSGV  633 (1075)
Q Consensus       629 n~~g~  633 (1075)
                      |..++
T Consensus        72 ns~~S   76 (85)
T d2fcba1          72 QTSLS   76 (85)
T ss_dssp             TSBCC
T ss_pred             CCccc
Confidence            86554

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.95  E-value=7.5e-11  Score=102.23  Aligned_cols=80  Identities=15%  Similarity=0.231  Sum_probs=59.8

Q ss_pred             eeeeecCCeEEEEEEE-ecCCCCeEEEEECCEEeecCCcE-----EEEEeeCcEEEEEEccccCCCCe---EEEEEEEeC
Q psy16863        757 SCQATVNEEFKFTVQV-SISPEPKVSWFRDDQQVVESDNV-----KILKETLGVCHLKIHALEVADQA---EWKCIATND  827 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v-~g~p~p~v~W~k~g~~i~~~~~~-----~~~~~~~~~~~L~I~~~~~~D~G---~Y~C~A~N~  827 (1075)
                      +.++.+|++++|.|.+ .|.|.|.+.|+|+|..+....+.     .+.....+  .|.|.+++.+|+|   .|+|.|.|.
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~gd~g~Y~C~A~N~   88 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDG--NLYFTIVTKEDVSDIYKYVCTAKNA   88 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTS--CEEEEEECGGGCCSSEEEEEEEECT
T ss_pred             cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeecccccc--ccEEeeeEeeccCCceEEEEEEEeC
Confidence            4557899999999997 89999999999998766433211     11122222  6999999988877   799999999


Q ss_pred             CceEEEEEEEE
Q psy16863        828 FGQSITSCFLK  838 (1075)
Q Consensus       828 ~G~~~~s~~l~  838 (1075)
                      +|.+.....+.
T Consensus        89 ~g~~~~~~~~~   99 (111)
T d1biha2          89 AVDEEVVLVEY   99 (111)
T ss_dssp             TCSSCEEEEEE
T ss_pred             CCCceEEEEEE
Confidence            99886554333

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.4e-10  Score=98.30  Aligned_cols=87  Identities=10%  Similarity=0.087  Sum_probs=62.3

Q ss_pred             eecCceeeccCCeEEEEEEEec-C--CCcEEEEEECCEecCCCCcEEEE--EcCCEEEEEEcccCCCCceeEEEEEEeCC
Q psy16863        354 RRLHDIAVKVGTRARLLVEIRS-P--TEIKIHWYRNDRKLEENKIYRTQ--HDGNFYFIDLSSVSLFDSGRWTCLAENAV  428 (1075)
Q Consensus       354 ~~~~~~~v~~G~~v~l~C~~~g-~--p~~~v~W~k~g~~l~~~~~~~~~--~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~  428 (1075)
                      ..+.+..+.+|+.++|.|.+.| .  |.++|+|||||+.|.........  .......|.|.....+|.|.|+|+|.|..
T Consensus         7 i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~   86 (106)
T d1zxqa1           7 LTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDL   86 (106)
T ss_dssp             EEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEEC
T ss_pred             ecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecC
Confidence            3556678999999999999976 3  45689999999988643221111  12234567788778888889999999998


Q ss_pred             CceeeEEEEEee
Q psy16863        429 GRSHCSCELSVL  440 (1075)
Q Consensus       429 g~~~~s~~l~V~  440 (1075)
                      |.......+.+.
T Consensus        87 ~~~~~~~~~~~s   98 (106)
T d1zxqa1          87 MSRGGNIFHKHS   98 (106)
T ss_dssp             GGGTCCEEEEEC
T ss_pred             CCCCCeeEeccc
Confidence            866544445443

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=5.8e-10  Score=90.64  Aligned_cols=78  Identities=18%  Similarity=0.253  Sum_probs=59.5

Q ss_pred             CeeeeecCceeeccCCeEEEEEEEecCCCc-EEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCC
Q psy16863        350 PAFIRRLHDIAVKVGTRARLLVEIRSPTEI-KIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAV  428 (1075)
Q Consensus       350 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~  428 (1075)
                      |.|...+....+.+|++++|.|.+.+.|.+ .+.|+|+|..+.....          .|.|.+++.+|+|.|.|.|.|..
T Consensus         2 P~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~~~----------~l~i~~v~~~d~G~Y~C~a~~s~   71 (82)
T d1f2qa1           2 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNS----------SLNIVNAKFEDSGEYKCQHQQVN   71 (82)
T ss_dssp             CCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCSS----------EEEECSCCGGGCEEEEEECTTSS
T ss_pred             CEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeecccc----------eeEECCCChhhCCcEEEEecCCC
Confidence            566667777889999999999999888766 5677899988865432          48999999999999999998765


Q ss_pred             CceeeEEEEEe
Q psy16863        429 GRSHCSCELSV  439 (1075)
Q Consensus       429 g~~~~s~~l~V  439 (1075)
                      +..  .+.|.|
T Consensus        72 ~S~--~v~l~V   80 (82)
T d1f2qa1          72 ESE--PVYLEV   80 (82)
T ss_dssp             CCC--CEEEEE
T ss_pred             Ccc--cEEEEE
Confidence            443  345555

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.78  E-value=2.4e-08  Score=89.32  Aligned_cols=92  Identities=22%  Similarity=0.367  Sum_probs=66.4

Q ss_pred             eeeeecCCeEEEEEEEecCC---CCeEEEEECCEEe-----ec------------CCcEEEEEe--eCcEEEEEEccccC
Q psy16863        757 SCQATVNEEFKFTVQVSISP---EPKVSWFRDDQQV-----VE------------SDNVKILKE--TLGVCHLKIHALEV  814 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~g~p---~p~v~W~k~g~~i-----~~------------~~~~~~~~~--~~~~~~L~I~~~~~  814 (1075)
                      .+.+..|++++|.|.+...+   ...+.|+|.+...     ..            ..+..+...  ..+.++|.|.+++.
T Consensus        11 ~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~   90 (126)
T d1pkoa_          11 PIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRF   90 (126)
T ss_dssp             CEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCG
T ss_pred             CEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEch
Confidence            46788999999999986433   3469999975311     00            112333221  23478999999999


Q ss_pred             CCCeEEEEEEEeCCceEEEEEEEEEEecCCCCCC
Q psy16863        815 ADQAEWKCIATNDFGQSITSCFLKLNVPKHYKKP  848 (1075)
Q Consensus       815 ~D~G~Y~C~A~N~~G~~~~s~~l~V~~~~~~~~p  848 (1075)
                      +|+|.|+|.+.|..|.....+.|.|..|.....|
T Consensus        91 ~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~~~~~p  124 (126)
T d1pkoa_          91 SDEGGYTCFFRDHSYQEEAAVELKVEDPFYWINP  124 (126)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEECTTTTSST
T ss_pred             hHCeEEEEEEEECCCEEEEEEEEEEeCCCEEeCC
Confidence            9999999999999999888899999887655443

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.77  E-value=2.3e-09  Score=92.56  Aligned_cols=77  Identities=17%  Similarity=0.182  Sum_probs=58.4

Q ss_pred             ceeeccCCeEEEEEEE-ecCCCcEEEEEECCEecCCC-------CcEEEEEcCCEEEEEEcccCCCCce---eEEEEEEe
Q psy16863        358 DIAVKVGTRARLLVEI-RSPTEIKIHWYRNDRKLEEN-------KIYRTQHDGNFYFIDLSSVSLFDSG---RWTCLAEN  426 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~-------~~~~~~~~g~~~~L~I~~v~~~d~G---~Y~C~a~n  426 (1075)
                      +..+.+|++++|.|.+ .|.|.|.+.|+|+|..+...       .++....++   +|.|.+++.+|+|   .|+|.|+|
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~D~gd~g~Y~C~A~N   87 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDG---NLYFTIVTKEDVSDIYKYVCTAKN   87 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTS---CEEEEEECGGGCCSSEEEEEEEEC
T ss_pred             cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeecccccc---ccEEeeeEeeccCCceEEEEEEEe
Confidence            3457899999999997 89999999999998765332       223333333   3788888888877   79999999


Q ss_pred             CCCceeeEEEE
Q psy16863        427 AVGRSHCSCEL  437 (1075)
Q Consensus       427 ~~g~~~~s~~l  437 (1075)
                      ..|.......+
T Consensus        88 ~~g~~~~~~~~   98 (111)
T d1biha2          88 AAVDEEVVLVE   98 (111)
T ss_dssp             TTCSSCEEEEE
T ss_pred             CCCCceEEEEE
Confidence            99988755433

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=2.5e-09  Score=89.73  Aligned_cols=79  Identities=22%  Similarity=0.275  Sum_probs=58.4

Q ss_pred             eeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCc----------EEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        757 SCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDN----------VKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~----------~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .+.+..|++++|.|.+. .|.+.|.|+|++..+.....          ..+.. ......|+|.+++++|+|.|+|.|.|
T Consensus         4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~sL~I~~l~~~DsG~Y~c~~~n   81 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYL-DTVSGSLTIYNLTSSDEDEYEMESPN   81 (93)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEE-CTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             EEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEE-cCCeeEEEEEecChhhCEEEEEEEEC
Confidence            45688999999999875 68899999999987642111          11111 12234799999999999999999999


Q ss_pred             CCceEEEEEEEEE
Q psy16863        827 DFGQSITSCFLKL  839 (1075)
Q Consensus       827 ~~G~~~~s~~l~V  839 (1075)
                      ..+.+.  +.|+|
T Consensus        82 ~~~t~~--~~l~V   92 (93)
T d1ccza1          82 ITDTMK--FFLYV   92 (93)
T ss_dssp             CCSCEE--EEEEE
T ss_pred             CCcEEE--EEEEE
Confidence            888664  45554

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.66  E-value=1e-07  Score=85.03  Aligned_cols=91  Identities=22%  Similarity=0.311  Sum_probs=65.5

Q ss_pred             cCceeeccCCeEEEEEEEecC---CCcEEEEEECCEec-----------C------CCCcEEEEEc---CCEEEEEEccc
Q psy16863        356 LHDIAVKVGTRARLLVEIRSP---TEIKIHWYRNDRKL-----------E------ENKIYRTQHD---GNFYFIDLSSV  412 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~---p~~~v~W~k~g~~l-----------~------~~~~~~~~~~---g~~~~L~I~~v  412 (1075)
                      ...+.+.+|++++|.|.+.+.   ....|.|+|.+...           .      -..+..+..+   .....|.|.++
T Consensus         9 ~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v   88 (126)
T d1pkoa_           9 GHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNV   88 (126)
T ss_dssp             SSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSC
T ss_pred             CCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEE
Confidence            345788899999999998542   24579999975321           0      0123333322   23568999999


Q ss_pred             CCCCceeEEEEEEeCCCceeeEEEEEeecCCCCC
Q psy16863        413 SLFDSGRWTCLAENAVGRSHCSCELSVLVPKAYK  446 (1075)
Q Consensus       413 ~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~  446 (1075)
                      +.+|+|.|.|.+.+..+...+.+.|.|..|....
T Consensus        89 ~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~~~~  122 (126)
T d1pkoa_          89 RFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWI  122 (126)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEECTTTTS
T ss_pred             chhHCeEEEEEEEECCCEEEEEEEEEEeCCCEEe
Confidence            9999999999999998888888889998775443

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=6.5e-09  Score=87.08  Aligned_cols=79  Identities=15%  Similarity=0.074  Sum_probs=56.8

Q ss_pred             ceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCC--C--------cEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        358 DIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEEN--K--------IYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~--~--------~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      .+....|++|+|.|.+ +.|.+.|.|+|++..+...  .        +.+...+.....|+|.+++.+|+|.|+|+|.|.
T Consensus         4 ~v~~~~G~sVtl~c~~-~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~   82 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (93)
T ss_dssp             EEEEETTCCEEECCCC-SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEECCCEEEEecC-CCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECC
Confidence            4577899999999987 5678899999999776311  1        111122223346999999999999999999887


Q ss_pred             CCceeeEEEEEe
Q psy16863        428 VGRSHCSCELSV  439 (1075)
Q Consensus       428 ~g~~~~s~~l~V  439 (1075)
                      .+..+  +.|.|
T Consensus        83 ~~t~~--~~l~V   92 (93)
T d1ccza1          83 TDTMK--FFLYV   92 (93)
T ss_dssp             CSCEE--EEEEE
T ss_pred             CcEEE--EEEEE
Confidence            66543  55554

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.49  E-value=1e-07  Score=79.89  Aligned_cols=78  Identities=21%  Similarity=0.260  Sum_probs=55.5

Q ss_pred             eeeecCCeEEEEEEEe-cCC-CCeEEEEECCEEeec----------CCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEE
Q psy16863        758 CQATVNEEFKFTVQVS-ISP-EPKVSWFRDDQQVVE----------SDNVKILKETLGVCHLKIHALEVADQAEWKCIAT  825 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~-g~p-~p~v~W~k~g~~i~~----------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~  825 (1075)
                      +....|++|+|.|... ... ...|.|+|++..+..          +.+..+  ..+  ..|+|.+++.+|+|.|+|.+.
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~--~~n--gSL~I~nl~~~DsG~Y~c~v~   80 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEI--LAN--GDLKIKNLTRDDSGTYNVTVY   80 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEE--CTT--SCEEESSCCGGGCEEEEEEEE
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEE--CCC--ccEEEeCCCHHHCEEEEEEEE
Confidence            4567899999999632 222 347999999987742          122222  122  369999999999999999999


Q ss_pred             eCCceEEEEEEEEE
Q psy16863        826 NDFGQSITSCFLKL  839 (1075)
Q Consensus       826 N~~G~~~~s~~l~V  839 (1075)
                      |..|....+..+.+
T Consensus        81 ~~~g~~~~~~~~~L   94 (98)
T d1hnga1          81 STNGTRILNKALDL   94 (98)
T ss_dssp             ETTCCEEEEEEEEE
T ss_pred             eCCCCEEEEEEEEE
Confidence            99998754444433

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.41  E-value=2e-07  Score=78.00  Aligned_cols=79  Identities=15%  Similarity=0.251  Sum_probs=56.1

Q ss_pred             eeeccCCeEEEEEEE-ecC-CCcEEEEEECCEecCC----------CCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEe
Q psy16863        359 IAVKVGTRARLLVEI-RSP-TEIKIHWYRNDRKLEE----------NKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       359 ~~v~~G~~v~l~C~~-~g~-p~~~v~W~k~g~~l~~----------~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      +....|++|+|.|.. ... ....|.|+|++..+..          ..+..+..++   .|+|.+++.+|+|.|+|.+.+
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ng---SL~I~nl~~~DsG~Y~c~v~~   81 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG---DLKIKNLTRDDSGTYNVTVYS   81 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTS---CEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCc---cEEEeCCCHHHCEEEEEEEEe
Confidence            456689999999963 222 2358999999976621          2233333333   489999999999999999999


Q ss_pred             CCCcee--eEEEEEee
Q psy16863        427 AVGRSH--CSCELSVL  440 (1075)
Q Consensus       427 ~~g~~~--~s~~l~V~  440 (1075)
                      ..|...  ..+.|.|.
T Consensus        82 ~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          82 TNGTRILNKALDLRIL   97 (98)
T ss_dssp             TTCCEEEEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEEE
Confidence            999874  45555553

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=8e-07  Score=78.78  Aligned_cols=87  Identities=15%  Similarity=0.303  Sum_probs=60.7

Q ss_pred             cceeeeecCCeEEEEEEEecCCC----CeEEEEECCEE--------ee-------------cCCcEEEEEe--eCcEEEE
Q psy16863        755 LKSCQATVNEEFKFTVQVSISPE----PKVSWFRDDQQ--------VV-------------ESDNVKILKE--TLGVCHL  807 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p~----p~v~W~k~g~~--------i~-------------~~~~~~~~~~--~~~~~~L  807 (1075)
                      ...+.+..|+++.|.|.+...+.    ..+.|++.+..        +.             -.++..+...  ..+.+.|
T Consensus        11 ~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL   90 (124)
T d1eaja_          11 EEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASI   90 (124)
T ss_dssp             EEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCE
T ss_pred             CceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEE
Confidence            34467889999999999986543    36899873210        00             0123333221  1235679


Q ss_pred             EEccccCCCCeEEEEEEEeCCceEEEEEEEEEEe
Q psy16863        808 KIHALEVADQAEWKCIATNDFGQSITSCFLKLNV  841 (1075)
Q Consensus       808 ~I~~~~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~  841 (1075)
                      +|.+++.+|+|.|.|.+.|..|.....+.|.|.+
T Consensus        91 ~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~V  124 (124)
T d1eaja_          91 NVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV  124 (124)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEcccEEccCEEEEEEEEECCCeEEeEEEEEEEC
Confidence            9999999999999999999988887777777753

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.27  E-value=6.4e-07  Score=76.18  Aligned_cols=78  Identities=15%  Similarity=0.172  Sum_probs=54.6

Q ss_pred             eeeccCCeEEEEEEEecCCCcEEEEEECCEecCC-------------------CCcEEEEEcCCEEEEEEcccCCCCcee
Q psy16863        359 IAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEE-------------------NKIYRTQHDGNFYFIDLSSVSLFDSGR  419 (1075)
Q Consensus       359 ~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~-------------------~~~~~~~~~g~~~~L~I~~v~~~d~G~  419 (1075)
                      ..+.+|++|.|.|.........+.|+|+......                   ..|..+..++   .|.|.+++.+|+|.
T Consensus         9 ~~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ng---SL~I~~v~~~D~G~   85 (107)
T d1l6za1           9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG---SLLFQMITMKDMGV   85 (107)
T ss_dssp             SSCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTS---CEEECSCCGGGCEE
T ss_pred             CcccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccc---cEEEcCCCchhCEE
Confidence            3467999999999843334679999996532110                   1244444444   48999999999999


Q ss_pred             EEEEEEeCCCc-eeeEEEEEe
Q psy16863        420 WTCLAENAVGR-SHCSCELSV  439 (1075)
Q Consensus       420 Y~C~a~n~~g~-~~~s~~l~V  439 (1075)
                      |+|++.+..+. ...++.|.|
T Consensus        86 Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          86 YTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEEEEEETTEEECCCCEEECC
T ss_pred             EEEEEEECCCCEEEEEEEEEE
Confidence            99999887643 445566655

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=5.8e-07  Score=75.40  Aligned_cols=91  Identities=9%  Similarity=-0.019  Sum_probs=60.5

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .+|.+...+.. .|..|++|+|.|... .+...+.|+|+|....................+.|.+++.+|+|.|+|...|
T Consensus         6 pkPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~   83 (99)
T d1ucta1           6 PMPFISAKSSP-VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRI   83 (99)
T ss_dssp             CCCCEEESSCS-EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEecCCC-ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEEC
Confidence            36666665544 588999999999876 5667999999875322111111111111234699999999999999999999


Q ss_pred             CCceEEEEEEEEE
Q psy16863        827 DFGQSITSCFLKL  839 (1075)
Q Consensus       827 ~~G~~~~s~~l~V  839 (1075)
                      ..+.+..|-.|.+
T Consensus        84 ~~~~S~~Sdpl~L   96 (99)
T d1ucta1          84 GHYRFRYSDTLEL   96 (99)
T ss_dssp             TTTEEEECCCEEE
T ss_pred             CCcccCCCCCEEE
Confidence            8775555544444

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=1.6e-06  Score=75.70  Aligned_cols=78  Identities=18%  Similarity=0.258  Sum_probs=58.0

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEEC--CEE------ee----------------cCCcEEEEEeeCc
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQQ------VV----------------ESDNVKILKETLG  803 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~~------i~----------------~~~~~~~~~~~~~  803 (1075)
                      +|.+...++...+.+|++++|.|.+.+.....+.|||-  |+.      |.                ...++........
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            35566667778899999999999999888889999981  221      10                0123444444455


Q ss_pred             EEEEEEccccCCCCeEEEEEEE
Q psy16863        804 VCHLKIHALEVADQAEWKCIAT  825 (1075)
Q Consensus       804 ~~~L~I~~~~~~D~G~Y~C~A~  825 (1075)
                      .+.|+|.+++.+|+|.|.|.+.
T Consensus        81 ~~~L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          81 KYVLTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEE
T ss_pred             EeEEEEcccccCCCEEEEeeEe
Confidence            6899999999999999999875

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2e-06  Score=76.02  Aligned_cols=85  Identities=20%  Similarity=0.269  Sum_probs=59.2

Q ss_pred             CceeeccCCeEEEEEEEecCC----CcEEEEEECCEecC-------------------C--CCcEEEEEc---CCEEEEE
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT----EIKIHWYRNDRKLE-------------------E--NKIYRTQHD---GNFYFID  408 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p----~~~v~W~k~g~~l~-------------------~--~~~~~~~~~---g~~~~L~  408 (1075)
                      ..+.+.+|++++|.|.+...+    ...+.|++......                   .  ..|..+..+   .....|+
T Consensus        12 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~   91 (124)
T d1eaja_          12 EMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASIN   91 (124)
T ss_dssp             EEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEE
T ss_pred             ceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEE
Confidence            456788999999999986543    24799997321110                   0  123333211   1234699


Q ss_pred             EcccCCCCceeEEEEEEeCCCceeeEEEEEeec
Q psy16863        409 LSSVSLFDSGRWTCLAENAVGRSHCSCELSVLV  441 (1075)
Q Consensus       409 I~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~  441 (1075)
                      |.+++.+|+|.|.|.+.+..|.......|+|.|
T Consensus        92 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~V  124 (124)
T d1eaja_          92 VTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV  124 (124)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EcccEEccCEEEEEEEEECCCeEEeEEEEEEEC
Confidence            999999999999999999888777777777754

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.15  E-value=5.5e-06  Score=69.91  Aligned_cols=75  Identities=16%  Similarity=0.326  Sum_probs=56.9

Q ss_pred             eeeecCceeeccCCeEEEEEEEecCCCcEEEEEEC--C-Ee-c----------CCCCcEEEEEcCCEEEEEEcccCCCCc
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--D-RK-L----------EENKIYRTQHDGNFYFIDLSSVSLFDS  417 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g-~~-l----------~~~~~~~~~~~g~~~~L~I~~v~~~d~  417 (1075)
                      +...|..+.+.+|++|+|.|.........+.||+-  | .+ +          ....++.....+..+.|+|.++..+|+
T Consensus         3 ltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~Ds   82 (106)
T d1a0ql1           3 LTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDI   82 (106)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             eECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCC
Confidence            34456778899999999999986655557999982  2 11 1          123466777778888999999999999


Q ss_pred             eeEEEEEEe
Q psy16863        418 GRWTCLAEN  426 (1075)
Q Consensus       418 G~Y~C~a~n  426 (1075)
                      |.|.|.+.+
T Consensus        83 A~YyCa~~~   91 (106)
T d1a0ql1          83 ATYYCLQYY   91 (106)
T ss_dssp             SEEEEEECS
T ss_pred             EeEEEEEeC
Confidence            999998753

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.11  E-value=5.2e-06  Score=70.02  Aligned_cols=75  Identities=12%  Similarity=0.302  Sum_probs=57.1

Q ss_pred             eeeecCceeeccCCeEEEEEEEecCCCcEEEEEEC--CEec------------CCCCcEEEEEcCCEEEEEEcccCCCCc
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DRKL------------EENKIYRTQHDGNFYFIDLSSVSLFDS  417 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~l------------~~~~~~~~~~~g~~~~L~I~~v~~~d~  417 (1075)
                      +...|..+.+.+|++++|.|...+.....+.|||.  |..+            ....++.....++...|+|.++..+|+
T Consensus         4 ltQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds   83 (106)
T d1i8ka_           4 LTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDV   83 (106)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccC
Confidence            34556778899999999999986655557999973  3221            123566666777888999999999999


Q ss_pred             eeEEEEEEe
Q psy16863        418 GRWTCLAEN  426 (1075)
Q Consensus       418 G~Y~C~a~n  426 (1075)
                      |.|.|.+.+
T Consensus        84 a~YyCa~~~   92 (106)
T d1i8ka_          84 GDYYCLQSF   92 (106)
T ss_dssp             EEEEEEECS
T ss_pred             EEEeEecCc
Confidence            999998653

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=3.8e-06  Score=71.73  Aligned_cols=92  Identities=13%  Similarity=0.224  Sum_probs=56.9

Q ss_pred             CCCCeeeeecCceeeccCCeEEEEEEEec-CCC--cEEEEEECCEecCCCCcEEE-EEcCC---EEEEEEcccCCCCce-
Q psy16863        347 PDAPAFIRRLHDIAVKVGTRARLLVEIRS-PTE--IKIHWYRNDRKLEENKIYRT-QHDGN---FYFIDLSSVSLFDSG-  418 (1075)
Q Consensus       347 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g-~p~--~~v~W~k~g~~l~~~~~~~~-~~~g~---~~~L~I~~v~~~d~G-  418 (1075)
                      |..|.+....   .+.+|+.++|.|.+.+ .|.  +.|.|++++..+........ ...+.   ...|.+.. +.+|.| 
T Consensus         2 P~~P~I~~~~---~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~-~~~D~g~   77 (109)
T d1vcaa1           2 PKDPEIHLSG---PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTP-VIEDIGK   77 (109)
T ss_dssp             CSCCEEEESS---CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECC-CGGGTTC
T ss_pred             CCCCEEecCC---CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccC-ChHHCCc
Confidence            4567665322   4789999999999965 664  37999999988753211000 01111   23466654 445555 


Q ss_pred             eEEEEEEeCCCce-------eeEEEEEeecC
Q psy16863        419 RWTCLAENAVGRS-------HCSCELSVLVP  442 (1075)
Q Consensus       419 ~Y~C~a~n~~g~~-------~~s~~l~V~~~  442 (1075)
                      .|+|+|+|.++..       .++..|.|..+
T Consensus        78 ~ltC~a~~~~~~~~~~~~~~~t~~~L~V~~~  108 (109)
T d1vcaa1          78 VLVCRAKLHIDEMDSVPTVRQAVKELQVYIS  108 (109)
T ss_dssp             EEEEEEEECSCCCTTSCSEEEEEEECCEECC
T ss_pred             EEEEEEEcCcCCccccccccceeEEeEEEeC
Confidence            8999999987542       23445666654

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=4.9e-06  Score=71.04  Aligned_cols=93  Identities=9%  Similarity=0.062  Sum_probs=58.3

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEec-CCCC--eEEEEECCEEeecCCcEEEEEee---CcEEEEEEccccCCCCeEE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSI-SPEP--KVSWFRDDQQVVESDNVKILKET---LGVCHLKIHALEVADQAEW  820 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g-~p~p--~v~W~k~g~~i~~~~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y  820 (1075)
                      ..|.+....   .+.+|+.++|.|.+.+ .|.+  .|+|+++++.+............   .....|++.-...+|...|
T Consensus         3 ~~P~I~~~~---~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~l   79 (109)
T d1vcaa1           3 KDPEIHLSG---PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVL   79 (109)
T ss_dssp             SCCEEEESS---CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEE
T ss_pred             CCCEEecCC---CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEE
Confidence            355554322   3779999999999886 6744  79999999987532110000000   0134677776666667789


Q ss_pred             EEEEEeCCce-------EEEEEEEEEEec
Q psy16863        821 KCIATNDFGQ-------SITSCFLKLNVP  842 (1075)
Q Consensus       821 ~C~A~N~~G~-------~~~s~~l~V~~~  842 (1075)
                      +|.|+|.++.       ..++..|.|..+
T Consensus        80 tC~a~~~~~~~~~~~~~~~t~~~L~V~~~  108 (109)
T d1vcaa1          80 VCRAKLHIDEMDSVPTVRQAVKELQVYIS  108 (109)
T ss_dssp             EEEEEECSCCCTTSCSEEEEEEECCEECC
T ss_pred             EEEEEcCcCCccccccccceeEEeEEEeC
Confidence            9999998765       233445666543

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=2e-06  Score=71.94  Aligned_cols=89  Identities=8%  Similarity=-0.014  Sum_probs=58.4

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCc-EEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI-YRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~-~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      +|.+...+ ...|..|++|+|.|... .+...+.|+|+|........ ......+....+.|.+++..|+|.|+|...+.
T Consensus         7 kPsLsa~P-~~~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~   84 (99)
T d1ucta1           7 MPFISAKS-SPVIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIG   84 (99)
T ss_dssp             CCCEEESS-CSEEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCEEEecC-CCceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECC
Confidence            45555444 45688999999999874 45679999998742211111 11112233345789999999999999999887


Q ss_pred             CCceeeEEEEEe
Q psy16863        428 VGRSHCSCELSV  439 (1075)
Q Consensus       428 ~g~~~~s~~l~V  439 (1075)
                      ...+..|-.|.+
T Consensus        85 ~~~S~~Sdpl~L   96 (99)
T d1ucta1          85 HYRFRYSDTLEL   96 (99)
T ss_dssp             TTEEEECCCEEE
T ss_pred             CcccCCCCCEEE
Confidence            665555544444

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=2.8e-06  Score=70.08  Aligned_cols=87  Identities=9%  Similarity=0.034  Sum_probs=58.6

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCC
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAV  428 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~  428 (1075)
                      +|.+...+ ...|..|++|+|.|... .....+.|+|+|........ .....+....+.|.+++..|+|.|+|...+..
T Consensus         4 KPsLsa~P-~~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~-~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~   80 (95)
T d1olla1           4 KPFIWAEP-HFMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRVGE   80 (95)
T ss_dssp             CCEEEEES-CSEEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECC-SSCTTCCEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCEEEeeC-CCcccCCCcEEEEEecC-CCccEEEEEECCCCcceeEE-ccCCCccEEEEEEeeeecCCCceEEEEeCCCC
Confidence            55555544 44688999999999873 44679999999864321100 00123445678999999999999999988765


Q ss_pred             CceeeEEEEE
Q psy16863        429 GRSHCSCELS  438 (1075)
Q Consensus       429 g~~~~s~~l~  438 (1075)
                      +.+..|-.|.
T Consensus        81 ~~S~~Sd~le   90 (95)
T d1olla1          81 LWSEPSNLLD   90 (95)
T ss_dssp             EECCCCCCEE
T ss_pred             CccCCCCCEE
Confidence            5444343333

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.05  E-value=8.8e-06  Score=68.44  Aligned_cols=74  Identities=18%  Similarity=0.315  Sum_probs=56.2

Q ss_pred             eeecCceeeccCCeEEEEEEEecCCCcEEEEEE--CCEec------------CCCCcEEEEEcCCEEEEEEcccCCCCce
Q psy16863        353 IRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYR--NDRKL------------EENKIYRTQHDGNFYFIDLSSVSLFDSG  418 (1075)
Q Consensus       353 ~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k--~g~~l------------~~~~~~~~~~~g~~~~L~I~~v~~~d~G  418 (1075)
                      ...|..+.+.+|++++|.|.........+.|||  .|+.+            ....++.....++...|.|.+++.+|+|
T Consensus         5 tQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   84 (107)
T d1c5cl1           5 TQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFA   84 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             EccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCe
Confidence            445677889999999999998766666799998  33221            1234556666677789999999999999


Q ss_pred             eEEEEEEe
Q psy16863        419 RWTCLAEN  426 (1075)
Q Consensus       419 ~Y~C~a~n  426 (1075)
                      .|.|.+.+
T Consensus        85 ~YyCa~~~   92 (107)
T d1c5cl1          85 DYYCLQYA   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             EEEEecCc
Confidence            99997653

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=1.3e-05  Score=69.75  Aligned_cols=78  Identities=18%  Similarity=0.368  Sum_probs=57.6

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEE--CCEe------c----C------------CCCcEEE-EEcCC
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYR--NDRK------L----E------------ENKIYRT-QHDGN  403 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k--~g~~------l----~------------~~~~~~~-~~~g~  403 (1075)
                      +|.+...|..+.+.+|++++|.|.+.+.....+.|||  .|..      |    .            ...++.. ...++
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            3666677888899999999999999877777899998  1221      1    0            0113322 24456


Q ss_pred             EEEEEEcccCCCCceeEEEEEEe
Q psy16863        404 FYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       404 ~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      .+.|+|.+++.+|+|.|.|.+..
T Consensus        81 ~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          81 KYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EeEEEEcccccCCCEEEEeeEeC
Confidence            67899999999999999998753

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.3e-05  Score=66.07  Aligned_cols=73  Identities=11%  Similarity=0.087  Sum_probs=58.0

Q ss_pred             CCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEecc--------CCCEEEEEeCCCCCCCcEEEEEEEEecce
Q psy16863        446 KAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK--------AGDIFALTANPKDPSSLGTYTCEAVNCMG  517 (1075)
Q Consensus       446 ~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~--------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  517 (1075)
                      .+|.+...+...+..|++|+|.|... .+...+.|+|+|....        .+....+.|.++...|+|.|+|...+..+
T Consensus         3 PKPsLsa~P~~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~   81 (95)
T d1olla1           3 PKPFIWAEPHFMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL   81 (95)
T ss_dssp             CCCEEEEESCSEEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCCEEEeeCCCcccCCCcEEEEEecC-CCccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCCCC
Confidence            45788888888899999999999864 3556899999986531        23456899999999999999999887655


Q ss_pred             ee
Q psy16863        518 AA  519 (1075)
Q Consensus       518 ~~  519 (1075)
                      ..
T Consensus        82 ~S   83 (95)
T d1olla1          82 WS   83 (95)
T ss_dssp             EC
T ss_pred             cc
Confidence            43

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.01  E-value=1.1e-05  Score=68.31  Aligned_cols=75  Identities=17%  Similarity=0.329  Sum_probs=57.7

Q ss_pred             eeeecCceeeccCCeEEEEEEEecCCCcEEEEEEC--CEec------------CCCCcEEEEEcCCEEEEEEcccCCCCc
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DRKL------------EENKIYRTQHDGNFYFIDLSSVSLFDS  417 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~l------------~~~~~~~~~~~g~~~~L~I~~v~~~d~  417 (1075)
                      +...|..+.+.+|++++|.|.........+.|||.  |+.+            ....++....++....|+|.++..+|+
T Consensus         4 ~tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1j1pl_           4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCC
Confidence            34556778899999999999986555567999983  2211            123567777788888999999999999


Q ss_pred             eeEEEEEEe
Q psy16863        418 GRWTCLAEN  426 (1075)
Q Consensus       418 G~Y~C~a~n  426 (1075)
                      |.|.|.+.+
T Consensus        84 a~YyCa~~~   92 (107)
T d1j1pl_          84 GMYFCQQAN   92 (107)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEEEcCC
Confidence            999997653

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.00  E-value=7.2e-06  Score=69.25  Aligned_cols=73  Identities=14%  Similarity=0.279  Sum_probs=55.3

Q ss_pred             eecCceeeccCCeEEEEEEEecCCCcEEEEEEC--CEec------------CCCCcEEEEEcCCEEEEEEcccCCCCcee
Q psy16863        354 RRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DRKL------------EENKIYRTQHDGNFYFIDLSSVSLFDSGR  419 (1075)
Q Consensus       354 ~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~l------------~~~~~~~~~~~g~~~~L~I~~v~~~d~G~  419 (1075)
                      ..|..+.+.+|++|+|.|...+.....+.|||-  |..+            ....++.....+..+.|.|.++..+|+|.
T Consensus         6 QsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~   85 (107)
T d1ospl1           6 QSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVAT   85 (107)
T ss_dssp             CCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSE
T ss_pred             eeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCc
Confidence            446677899999999999986655557999982  2211            12356667666777889999999999999


Q ss_pred             EEEEEEe
Q psy16863        420 WTCLAEN  426 (1075)
Q Consensus       420 Y~C~a~n  426 (1075)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (107)
T d1ospl1          86 YFCQQYW   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEEeecc
Confidence            9998753

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.99  E-value=1.1e-05  Score=69.16  Aligned_cols=77  Identities=13%  Similarity=0.242  Sum_probs=55.2

Q ss_pred             eeecCceeeccCCeEEEEEEEecCCCcEEEEEEC--CEec------CC------CCcEE--EEEcCCEEEEEEcccCCCC
Q psy16863        353 IRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DRKL------EE------NKIYR--TQHDGNFYFIDLSSVSLFD  416 (1075)
Q Consensus       353 ~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~l------~~------~~~~~--~~~~g~~~~L~I~~v~~~d  416 (1075)
                      ...|..+.+.+|++++|.|...+.....+.|||-  |+.+      ..      ..++.  ....+....|.|.++..+|
T Consensus         4 ~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   83 (113)
T d2bnqd1           4 TQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGD   83 (113)
T ss_dssp             ECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred             EeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCC
Confidence            4456678899999999999997766668999982  2211      01      12222  2334567789999999999


Q ss_pred             ceeEEEEEEeCCC
Q psy16863        417 SGRWTCLAENAVG  429 (1075)
Q Consensus       417 ~G~Y~C~a~n~~g  429 (1075)
                      +|.|.|.+....+
T Consensus        84 sg~YyCa~~~~~~   96 (113)
T d2bnqd1          84 SATYLCAVRPTSG   96 (113)
T ss_dssp             CEEEEEEEEESSS
T ss_pred             CcEEeEeEecCCC
Confidence            9999999976544

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.98  E-value=1e-05  Score=69.55  Aligned_cols=77  Identities=18%  Similarity=0.358  Sum_probs=55.7

Q ss_pred             eeeecCceeeccCCeEEEEEEEecCCCcEEEEEECC--Ee---c---------CCCCcEEEE--EcCCEEEEEEcccCCC
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRND--RK---L---------EENKIYRTQ--HDGNFYFIDLSSVSLF  415 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g--~~---l---------~~~~~~~~~--~~g~~~~L~I~~v~~~  415 (1075)
                      +...|..+.+.+|++++|.|.....+...+.|||..  ..   |         ....++...  .....+.|+|.++..+
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~   82 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLS   82 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGG
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChh
Confidence            344567788999999999999877666789999832  11   1         011233332  2345678999999999


Q ss_pred             CceeEEEEEEeCC
Q psy16863        416 DSGRWTCLAENAV  428 (1075)
Q Consensus       416 d~G~Y~C~a~n~~  428 (1075)
                      |+|.|.|.+....
T Consensus        83 Dsg~Y~Ca~~~~~   95 (114)
T d2cdea1          83 DSASYICVVSDRG   95 (114)
T ss_dssp             GCSEEEEEEECSC
T ss_pred             hCcccceeeecCC
Confidence            9999999998753

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.98  E-value=1.5e-05  Score=67.20  Aligned_cols=74  Identities=15%  Similarity=0.306  Sum_probs=56.9

Q ss_pred             eeeecCceeeccCCeEEEEEEEecCCCcEEEEEEC--CEe---c---------CCCCcEEEEEcCCEEEEEEcccCCCCc
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DRK---L---------EENKIYRTQHDGNFYFIDLSSVSLFDS  417 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~---l---------~~~~~~~~~~~g~~~~L~I~~v~~~d~  417 (1075)
                      +...|..+.+.+|++|+|.|.........+.|||.  |..   |         ....++....++....|+|.++..+|+
T Consensus         4 ~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   83 (107)
T d1tjgl1           4 LTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDF   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcC
Confidence            44567778899999999999996655678999983  211   1         123466666677888999999999999


Q ss_pred             eeEEEEEE
Q psy16863        418 GRWTCLAE  425 (1075)
Q Consensus       418 G~Y~C~a~  425 (1075)
                      |.|.|.+.
T Consensus        84 A~YyCa~~   91 (107)
T d1tjgl1          84 ATYYCQQL   91 (107)
T ss_dssp             SEEEEEEC
T ss_pred             ceEEEEEC
Confidence            99999754

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.97  E-value=2.3e-06  Score=72.63  Aligned_cols=70  Identities=16%  Similarity=0.209  Sum_probs=48.8

Q ss_pred             EeecCCeEEEEEEEecCCCCceEEEEeCCeEEe---------------c----CCcEEEEEcCCceEEEEEeeeeecCCc
Q psy16863        561 KAKIGTSAILECQVLVPPWPRSIYWYNKEGVVE---------------A----SDKYHIMADGLGGYSIEINYLEAVDDG  621 (1075)
Q Consensus       561 ~v~~G~~~~L~C~~~~~p~p~~v~W~~~~~~i~---------------~----~~~~~~~~~~~~~~~L~i~~~~~~d~G  621 (1075)
                      .+.+|++++|.|...... +..+.|+|+.....               .    ..|..+..++    +|.|.+++.+|+|
T Consensus        10 ~v~~G~~V~L~c~~~p~~-~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ng----SL~I~~v~~~D~G   84 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLPLA-LGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG----SLLFQMITMKDMG   84 (107)
T ss_dssp             SCCTTCCEEEEEESCCTT-CSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTS----CEEECSCCGGGCE
T ss_pred             cccCCCCEEEEecCCCCC-ceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccc----cEEEcCCCchhCE
Confidence            356899999999743222 34899998653211               0    1244444333    7999999999999


Q ss_pred             eEEEEEECCCCcee
Q psy16863        622 EWKCVATSSSGVKQ  635 (1075)
Q Consensus       622 ~Y~C~a~n~~g~~~  635 (1075)
                      .|+|.+.+..+...
T Consensus        85 ~Y~c~v~~~~~~~~   98 (107)
T d1l6za1          85 VYTLDMTDENYRRT   98 (107)
T ss_dssp             EEEEEEEETTEEEC
T ss_pred             EEEEEEEECCCCEE
Confidence            99999988765543

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.97  E-value=1.4e-05  Score=67.51  Aligned_cols=70  Identities=14%  Similarity=0.337  Sum_probs=54.1

Q ss_pred             cCceeeccCCeEEEEEEEecCCCcEEEEEEC--CE---ec---------CCCCcEEEEEcCCEEEEEEcccCCCCceeEE
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DR---KL---------EENKIYRTQHDGNFYFIDLSSVSLFDSGRWT  421 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~---~l---------~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~  421 (1075)
                      ++.+.+.+|++++|.|..++.....+.|||-  |.   .|         ....++....+++...|.|.++..+|+|.|.
T Consensus         7 p~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy   86 (106)
T d1lk3l1           7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (106)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCcc
Confidence            3457889999999999997655567999973  21   11         1234667777788889999999999999999


Q ss_pred             EEEE
Q psy16863        422 CLAE  425 (1075)
Q Consensus       422 C~a~  425 (1075)
                      |.+.
T Consensus        87 Ca~~   90 (106)
T d1lk3l1          87 CQQS   90 (106)
T ss_dssp             EEEC
T ss_pred             cccc
Confidence            9654

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=7.1e-06  Score=68.38  Aligned_cols=69  Identities=14%  Similarity=0.232  Sum_probs=48.9

Q ss_pred             eeeecCCeEEEEEEEecCCCCeEEEEECCE--EeecCC------------cEEEEE--eeCcEEEEEEccccCCCCeEEE
Q psy16863        758 CQATVNEEFKFTVQVSISPEPKVSWFRDDQ--QVVESD------------NVKILK--ETLGVCHLKIHALEVADQAEWK  821 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~--~i~~~~------------~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~  821 (1075)
                      +...+|++++|.|..+......+.|++...  .+....            ++....  ...+..+|.|.+++.+|+|.|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            456789999999998877778999998643  221111            111111  1223567999999999999999


Q ss_pred             EEEEe
Q psy16863        822 CIATN  826 (1075)
Q Consensus       822 C~A~N  826 (1075)
                      |.+.|
T Consensus        84 C~v~~   88 (97)
T d2nxyb1          84 CEVED   88 (97)
T ss_dssp             EEETT
T ss_pred             EEEec
Confidence            99965

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.96  E-value=1.7e-05  Score=68.11  Aligned_cols=76  Identities=18%  Similarity=0.260  Sum_probs=54.6

Q ss_pred             ccceeeeecCCeEEEEEEEecCCCCeEEEEEC--CEE---e---------ecCCcEEEEEe-eCcEEEEEEccccCCCCe
Q psy16863        754 GLKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQQ---V---------VESDNVKILKE-TLGVCHLKIHALEVADQA  818 (1075)
Q Consensus       754 ~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~~---i---------~~~~~~~~~~~-~~~~~~L~I~~~~~~D~G  818 (1075)
                      .+..+.+.+|++++|+|..++.....+.|||-  |+.   +         ....++..... ....+.|+|.+++.+|+|
T Consensus         6 ~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg   85 (113)
T d2bnqd1           6 IPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSA   85 (113)
T ss_dssp             SSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCE
T ss_pred             eCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCc
Confidence            34556789999999999998776678999982  221   1         11233433333 345789999999999999


Q ss_pred             EEEEEEEeCCc
Q psy16863        819 EWKCIATNDFG  829 (1075)
Q Consensus       819 ~Y~C~A~N~~G  829 (1075)
                      .|.|.+....+
T Consensus        86 ~YyCa~~~~~~   96 (113)
T d2bnqd1          86 TYLCAVRPTSG   96 (113)
T ss_dssp             EEEEEEEESSS
T ss_pred             EEeEeEecCCC
Confidence            99999975543

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.95  E-value=2.1e-05  Score=66.24  Aligned_cols=75  Identities=13%  Similarity=0.270  Sum_probs=55.9

Q ss_pred             eeeecCceeeccCCeEEEEEEEecCCCcEEEEEEC--CEe---c---------CCCCcEEEEEcCCEEEEEEcccCCCCc
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DRK---L---------EENKIYRTQHDGNFYFIDLSSVSLFDS  417 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~---l---------~~~~~~~~~~~g~~~~L~I~~v~~~d~  417 (1075)
                      +...|..+.+.+|++++|.|...+.....+.|||-  |..   |         ....++....++....|+|.++..+|+
T Consensus         4 vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds   83 (108)
T d1jhll_           4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDF   83 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCC
T ss_pred             EEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccc
Confidence            34456678899999999999986655567999982  211   1         112345566777888999999999999


Q ss_pred             eeEEEEEEe
Q psy16863        418 GRWTCLAEN  426 (1075)
Q Consensus       418 G~Y~C~a~n  426 (1075)
                      |.|.|.+.+
T Consensus        84 a~YyCA~~~   92 (108)
T d1jhll_          84 AMYICQQHN   92 (108)
T ss_dssp             SEEEEEECS
T ss_pred             eEEEEeeCC
Confidence            999997654

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.94  E-value=1e-05  Score=69.63  Aligned_cols=75  Identities=15%  Similarity=0.336  Sum_probs=54.4

Q ss_pred             eccceeeeecCCeEEEEEEEecCCCCeEEEEECC--E---Ee---------ecCCcEEEEE-eeCcEEEEEEccccCCCC
Q psy16863        753 EGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDD--Q---QV---------VESDNVKILK-ETLGVCHLKIHALEVADQ  817 (1075)
Q Consensus       753 ~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g--~---~i---------~~~~~~~~~~-~~~~~~~L~I~~~~~~D~  817 (1075)
                      ..+..+.+.+|++++|.|.....+...+.|||-.  .   .|         ....++.... .....+.|+|.+++.+|+
T Consensus         5 Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Ds   84 (114)
T d2cdea1           5 QSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDS   84 (114)
T ss_dssp             EECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGC
T ss_pred             eeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhC
Confidence            3345667889999999999987777789999732  1   11         1123444432 223578899999999999


Q ss_pred             eEEEEEEEeC
Q psy16863        818 AEWKCIATND  827 (1075)
Q Consensus       818 G~Y~C~A~N~  827 (1075)
                      |.|.|.+.+.
T Consensus        85 g~Y~Ca~~~~   94 (114)
T d2cdea1          85 ASYICVVSDR   94 (114)
T ss_dssp             SEEEEEEECS
T ss_pred             cccceeeecC
Confidence            9999999874

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.94  E-value=2.1e-05  Score=66.26  Aligned_cols=73  Identities=14%  Similarity=0.305  Sum_probs=56.5

Q ss_pred             eecCceeeccCCeEEEEEEEecCCCcEEEEEECC--E---ec---------CCCCcEEEEEcCCEEEEEEcccCCCCcee
Q psy16863        354 RRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRND--R---KL---------EENKIYRTQHDGNFYFIDLSSVSLFDSGR  419 (1075)
Q Consensus       354 ~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g--~---~l---------~~~~~~~~~~~g~~~~L~I~~v~~~d~G~  419 (1075)
                      ..|..+.+.+|++++|.|...+.....+.||+..  +   .|         ....++....++....|.|.++..+|+|.
T Consensus         5 Q~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~   84 (106)
T d1op3k1           5 QSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFAT   84 (106)
T ss_dssp             EECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSE
T ss_pred             CcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCc
Confidence            4567788999999999999866555679999832  1   11         11246677777888899999999999999


Q ss_pred             EEEEEEe
Q psy16863        420 WTCLAEN  426 (1075)
Q Consensus       420 Y~C~a~n  426 (1075)
                      |.|.+..
T Consensus        85 YyCa~~~   91 (106)
T d1op3k1          85 YHCQHYA   91 (106)
T ss_dssp             EEEEEEC
T ss_pred             EeeeeCC
Confidence            9998753

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.94  E-value=1.6e-05  Score=66.98  Aligned_cols=73  Identities=11%  Similarity=0.284  Sum_probs=55.3

Q ss_pred             eeecCceeeccCCeEEEEEEEecCCCcEEEEEEC--CEe---c---------CCCCcEEEEEcCCEEEEEEcccCCCCce
Q psy16863        353 IRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DRK---L---------EENKIYRTQHDGNFYFIDLSSVSLFDSG  418 (1075)
Q Consensus       353 ~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~---l---------~~~~~~~~~~~g~~~~L~I~~v~~~d~G  418 (1075)
                      ...+..+.+.+|++++|.|.........+.|||.  |..   |         ....++.....++...|.|.++..+|+|
T Consensus         5 tQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA   84 (107)
T d1mexl1           5 TQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLA   84 (107)
T ss_dssp             ECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             EcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecce
Confidence            3455667889999999999986555557999972  221   1         1135667777778889999999999999


Q ss_pred             eEEEEEE
Q psy16863        419 RWTCLAE  425 (1075)
Q Consensus       419 ~Y~C~a~  425 (1075)
                      .|.|.+.
T Consensus        85 ~YyCa~~   91 (107)
T d1mexl1          85 EYFCQQY   91 (107)
T ss_dssp             EEEEEEC
T ss_pred             eEEEeEC
Confidence            9999864

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.94  E-value=2.4e-05  Score=65.84  Aligned_cols=73  Identities=16%  Similarity=0.223  Sum_probs=53.1

Q ss_pred             eccceeeeecCCeEEEEEEEecCCCCeEEEEEC---CEEe---e--------cCCcEEEEEeeCcEEEEEEccccCCCCe
Q psy16863        753 EGLKSCQATVNEEFKFTVQVSISPEPKVSWFRD---DQQV---V--------ESDNVKILKETLGVCHLKIHALEVADQA  818 (1075)
Q Consensus       753 ~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~---g~~i---~--------~~~~~~~~~~~~~~~~L~I~~~~~~D~G  818 (1075)
                      ..+..+.+.+|++++|.|..+......+.|||-   ..+.   .        ...++.... ....+.|+|.+++++|+|
T Consensus         5 QsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~L~I~~~~~~DsA   83 (106)
T d1a0ql1           5 QSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSG-SGRDYSFSISNLEPEDIA   83 (106)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE-ETTEEEEEECSCCGGGCS
T ss_pred             CcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeec-CCCEeeeEehhhcccCCE
Confidence            334556788999999999988766667999983   2111   1        123555543 345789999999999999


Q ss_pred             EEEEEEEe
Q psy16863        819 EWKCIATN  826 (1075)
Q Consensus       819 ~Y~C~A~N  826 (1075)
                      .|.|.+.+
T Consensus        84 ~YyCa~~~   91 (106)
T d1a0ql1          84 TYYCLQYY   91 (106)
T ss_dssp             EEEEEECS
T ss_pred             eEEEEEeC
Confidence            99998754

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=2e-05  Score=67.61  Aligned_cols=76  Identities=14%  Similarity=0.225  Sum_probs=56.9

Q ss_pred             eeeecCceeeccCCeEEEEEEEecC-CCcEEEEEECC----Ee-c---------------CCCCcEEEEEcCCEEEEEEc
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIRSP-TEIKIHWYRND----RK-L---------------EENKIYRTQHDGNFYFIDLS  410 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~g~-p~~~v~W~k~g----~~-l---------------~~~~~~~~~~~g~~~~L~I~  410 (1075)
                      +...|.+..+.+|++|+|.|.+.+. ....+.|||-.    .. +               ....++.....++...|.|.
T Consensus         3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~   82 (114)
T d1akjd_           3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLS   82 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEES
T ss_pred             eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEc
Confidence            4456778889999999999998553 34579999822    11 1               11246666777777899999


Q ss_pred             ccCCCCceeEEEEEEeC
Q psy16863        411 SVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       411 ~v~~~d~G~Y~C~a~n~  427 (1075)
                      ++..+|+|.|.|.+...
T Consensus        83 ~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          83 DFRRENEGYYFCSALSN   99 (114)
T ss_dssp             SCCGGGCEEEEEEEEET
T ss_pred             cCCCCCCEEEeEeEcCC
Confidence            99999999999998643

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.93  E-value=1.9e-05  Score=66.87  Aligned_cols=73  Identities=15%  Similarity=0.288  Sum_probs=56.0

Q ss_pred             eeecCceeeccCCeEEEEEEEecCCCcEEEEEEC--CEe---c---------CCCCcEEEEEcCCEEEEEEcccCCCCce
Q psy16863        353 IRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DRK---L---------EENKIYRTQHDGNFYFIDLSSVSLFDSG  418 (1075)
Q Consensus       353 ~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~---l---------~~~~~~~~~~~g~~~~L~I~~v~~~d~G  418 (1075)
                      ...|..+.+.+|++|+|.|.........+.|||.  |..   |         ....++..........|+|.++..+|+|
T Consensus         5 tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa   84 (107)
T d1kcvl1           5 TQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDA   84 (107)
T ss_dssp             EESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             ECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCc
Confidence            3456677899999999999987655567999983  211   1         1235666677777889999999999999


Q ss_pred             eEEEEEE
Q psy16863        419 RWTCLAE  425 (1075)
Q Consensus       419 ~Y~C~a~  425 (1075)
                      .|.|.+.
T Consensus        85 ~YyCa~~   91 (107)
T d1kcvl1          85 DYYCGQS   91 (107)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEec
Confidence            9999864

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1.1e-05  Score=69.97  Aligned_cols=88  Identities=13%  Similarity=0.166  Sum_probs=58.5

Q ss_pred             ccceeeeecCCeEEEEEEEecCC---CCeEEEEECCE-----Eee---------cCCcEEEE-EeeCcEEEEEEccccCC
Q psy16863        754 GLKSCQATVNEEFKFTVQVSISP---EPKVSWFRDDQ-----QVV---------ESDNVKIL-KETLGVCHLKIHALEVA  815 (1075)
Q Consensus       754 ~~~~~~~~~g~~~~l~C~v~g~p---~p~v~W~k~g~-----~i~---------~~~~~~~~-~~~~~~~~L~I~~~~~~  815 (1075)
                      .++.+.+.+|++++|.|......   ...+.|+|...     .+.         ...++.+. ....+...|+|.+++.+
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~   84 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   84 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence            45667889999999999976432   34688998431     111         12344443 23456789999999999


Q ss_pred             CCeEEEEEEEeCCceEEEEEEEEEEe
Q psy16863        816 DQAEWKCIATNDFGQSITSCFLKLNV  841 (1075)
Q Consensus       816 D~G~Y~C~A~N~~G~~~~s~~l~V~~  841 (1075)
                      |+|.|.|.+.+..........|.|..
T Consensus        85 DsG~Y~C~v~~~~~~~~~~v~L~V~~  110 (116)
T d1xeda_          85 DSGRYKCGLGINSRGLSFDVSLEVLE  110 (116)
T ss_dssp             GCEEEEEEESCGGGCCEEEEEEEEEC
T ss_pred             CCEEEEEEEEcCCCCceEeEEEEEEC
Confidence            99999998865443334456666654

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.92  E-value=2.2e-05  Score=66.68  Aligned_cols=75  Identities=16%  Similarity=0.306  Sum_probs=57.2

Q ss_pred             eeeecCceeeccCCeEEEEEEEecCCCcEEEEEEC--CE---ec---------CCCCcEEEEEcCCEEEEEEcccCCCCc
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DR---KL---------EENKIYRTQHDGNFYFIDLSSVSLFDS  417 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~---~l---------~~~~~~~~~~~g~~~~L~I~~v~~~d~  417 (1075)
                      +...|..+.+.+|++++|.|...+.....+.|||.  |+   .|         ....++....+++.+.|+|.++..+|+
T Consensus         6 ltQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Ds   85 (109)
T d1bwwa_           6 MTQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDI   85 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcC
Confidence            34556778899999999999997655567899982  21   11         123566777778888999999999999


Q ss_pred             eeEEEEEEe
Q psy16863        418 GRWTCLAEN  426 (1075)
Q Consensus       418 G~Y~C~a~n  426 (1075)
                      |.|.|.+..
T Consensus        86 a~YyCA~~~   94 (109)
T d1bwwa_          86 ATYYCQQYQ   94 (109)
T ss_dssp             EEEEEEECS
T ss_pred             ceEEEeecC
Confidence            999998653

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=3.1e-05  Score=66.28  Aligned_cols=75  Identities=16%  Similarity=0.122  Sum_probs=54.1

Q ss_pred             eccceeeeecCCeEEEEEEEecC-CCCeEEEEEC--CE-E--e----------ecCCcEEEEEeeC-cEEEEEEccccCC
Q psy16863        753 EGLKSCQATVNEEFKFTVQVSIS-PEPKVSWFRD--DQ-Q--V----------VESDNVKILKETL-GVCHLKIHALEVA  815 (1075)
Q Consensus       753 ~~~~~~~~~~g~~~~l~C~v~g~-p~p~v~W~k~--g~-~--i----------~~~~~~~~~~~~~-~~~~L~I~~~~~~  815 (1075)
                      ..+..+.+.+|++++|.|...+. ....+.|||-  |+ +  |          ....++.+..... ..+.|.|.+++++
T Consensus         4 qsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~   83 (114)
T d3bp5a1           4 FYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRN   83 (114)
T ss_dssp             EESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGG
T ss_pred             ECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcC
Confidence            34556779999999999998754 3457899982  22 1  1          1234566655433 4678999999999


Q ss_pred             CCeEEEEEEEeC
Q psy16863        816 DQAEWKCIATND  827 (1075)
Q Consensus       816 D~G~Y~C~A~N~  827 (1075)
                      |+|.|.|.+...
T Consensus        84 Dsg~YyCa~~~~   95 (114)
T d3bp5a1          84 DSGIYLCGAISL   95 (114)
T ss_dssp             GCEEEEEEEECS
T ss_pred             CCeEEEEEEEeC
Confidence            999999988643

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.91  E-value=3e-05  Score=65.82  Aligned_cols=74  Identities=14%  Similarity=0.255  Sum_probs=54.6

Q ss_pred             ccceeeeecCCeEEEEEEEecC--CCCeEEEEEC------CEEeecCCcEEEEEee-CcEEEEEEccccCCCCeEEEEEE
Q psy16863        754 GLKSCQATVNEEFKFTVQVSIS--PEPKVSWFRD------DQQVVESDNVKILKET-LGVCHLKIHALEVADQAEWKCIA  824 (1075)
Q Consensus       754 ~~~~~~~~~g~~~~l~C~v~g~--p~p~v~W~k~------g~~i~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~A  824 (1075)
                      .+..+.+..|++++|.|..++.  ....+.|||.      ...+..+.++....+. ...+.|+|.+++++|+|.|.|.+
T Consensus         5 ~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~   84 (112)
T d1sq2n_           5 TPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGL   84 (112)
T ss_dssp             ECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEE
Confidence            3445668899999999998753  3568999982      2334455566655443 34789999999999999999987


Q ss_pred             EeC
Q psy16863        825 TND  827 (1075)
Q Consensus       825 ~N~  827 (1075)
                      ...
T Consensus        85 ~~~   87 (112)
T d1sq2n_          85 GVA   87 (112)
T ss_dssp             CBT
T ss_pred             ecC
Confidence            644

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=4e-05  Score=65.11  Aligned_cols=72  Identities=13%  Similarity=0.195  Sum_probs=50.0

Q ss_pred             eeeeecCCeEEEEEEEecC--CCCeEEEEECC--EE---e-e--------cCCcEEEEE-eeCcEEEEEEccccCCCCeE
Q psy16863        757 SCQATVNEEFKFTVQVSIS--PEPKVSWFRDD--QQ---V-V--------ESDNVKILK-ETLGVCHLKIHALEVADQAE  819 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~g~--p~p~v~W~k~g--~~---i-~--------~~~~~~~~~-~~~~~~~L~I~~~~~~D~G~  819 (1075)
                      .+.+.+|++++|.|.....  ....+.|||..  ..   | .        ...++.+.. ...+.+.|.|.+++++|+|.
T Consensus         5 ~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~   84 (108)
T d1hkfa_           5 VLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGH   84 (108)
T ss_dssp             EEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             EEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEE
Confidence            4568899999999987643  23467899832  11   1 1        123444433 24568899999999999999


Q ss_pred             EEEEEEeCC
Q psy16863        820 WKCIATNDF  828 (1075)
Q Consensus       820 Y~C~A~N~~  828 (1075)
                      |.|......
T Consensus        85 Y~C~v~~~~   93 (108)
T d1hkfa_          85 YWCRIYRPS   93 (108)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEecCC
Confidence            999887543

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.91  E-value=3.1e-05  Score=63.93  Aligned_cols=81  Identities=19%  Similarity=0.220  Sum_probs=53.3

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecC--CCcEEEEEECCEecCCCCcE---EEEEcCCEEEEEEcccCCCCceeEEE
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSP--TEIKIHWYRNDRKLEENKIY---RTQHDGNFYFIDLSSVSLFDSGRWTC  422 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~--p~~~v~W~k~g~~l~~~~~~---~~~~~g~~~~L~I~~v~~~d~G~Y~C  422 (1075)
                      +||.+...+. ..+..|+.++|.|.+.|.  +...|+|++||..+..+...   ....+|.........+..++.+.|+|
T Consensus         2 ~pP~V~v~p~-~~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC   80 (100)
T d1muja1           2 EAPQATVFPK-SPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDC   80 (100)
T ss_dssp             CCCEEEEEES-SCCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEE
T ss_pred             CCCEEEEEcC-CccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEE
Confidence            3566544332 245678899999999883  46899999999888653211   12234454434444445667779999


Q ss_pred             EEEeCCC
Q psy16863        423 LAENAVG  429 (1075)
Q Consensus       423 ~a~n~~g  429 (1075)
                      ++.+..-
T Consensus        81 ~V~H~sl   87 (100)
T d1muja1          81 KVEHWGL   87 (100)
T ss_dssp             EEECTTS
T ss_pred             EEEECCC
Confidence            9998743

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.91  E-value=1.1e-05  Score=69.42  Aligned_cols=76  Identities=17%  Similarity=0.218  Sum_probs=53.3

Q ss_pred             eeecCceeeccCCeEEEEEEEecCCCcEEEEEEC--CEec------------CCCCcEEEE--EcCCEEEEEEcccCCCC
Q psy16863        353 IRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DRKL------------EENKIYRTQ--HDGNFYFIDLSSVSLFD  416 (1075)
Q Consensus       353 ~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~l------------~~~~~~~~~--~~g~~~~L~I~~v~~~d  416 (1075)
                      ...+..+.+.+|++++|.|.........+.|||.  |..+            ....++.+.  ..++...|.|.+++.+|
T Consensus         5 ~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   84 (115)
T d1lp9e1           5 TQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSD   84 (115)
T ss_dssp             EECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGG
T ss_pred             EcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeecccccccc
Confidence            3445667899999999999987666678999983  2211            011223332  23345579999999999


Q ss_pred             ceeEEEEEEeCC
Q psy16863        417 SGRWTCLAENAV  428 (1075)
Q Consensus       417 ~G~Y~C~a~n~~  428 (1075)
                      +|.|.|.+....
T Consensus        85 sg~YyCa~~~~~   96 (115)
T d1lp9e1          85 SALYYCALFLAS   96 (115)
T ss_dssp             CEEEEEEEEECS
T ss_pred             CccceEEEEcCC
Confidence            999999886543

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.89  E-value=2.3e-05  Score=66.72  Aligned_cols=72  Identities=17%  Similarity=0.224  Sum_probs=51.7

Q ss_pred             cCceeeccCCeEEEEEEEecC-CCcEEEEEEC--CEec------------CCCCcEEEEEcCCEEEEEEcccCCCCceeE
Q psy16863        356 LHDIAVKVGTRARLLVEIRSP-TEIKIHWYRN--DRKL------------EENKIYRTQHDGNFYFIDLSSVSLFDSGRW  420 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~-p~~~v~W~k~--g~~l------------~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y  420 (1075)
                      ++.+.+.+|++++|.|...+. ....+.|||.  |+.+            ....++....++....|.|.++..+|+|.|
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY   84 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE
Confidence            345788999999999997543 3456899982  3211            112233444556778899999999999999


Q ss_pred             EEEEEeC
Q psy16863        421 TCLAENA  427 (1075)
Q Consensus       421 ~C~a~n~  427 (1075)
                      .|.+...
T Consensus        85 yCa~~~~   91 (110)
T d2esvd1          85 YCIVVRS   91 (110)
T ss_dssp             EEEEEES
T ss_pred             EEEEeCC
Confidence            9998654

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.89  E-value=3.1e-05  Score=66.81  Aligned_cols=75  Identities=13%  Similarity=0.196  Sum_probs=55.3

Q ss_pred             eccceeeeecCCeEEEEEEEecCCCCeEEEEEC--CEEee-----------------cCCcEEEEEeeCcEEEEEEcccc
Q psy16863        753 EGLKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQQVV-----------------ESDNVKILKETLGVCHLKIHALE  813 (1075)
Q Consensus       753 ~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~~i~-----------------~~~~~~~~~~~~~~~~L~I~~~~  813 (1075)
                      ..+....+.+|++++|+|...+.....+.|||-  |+.+.                 ...++.+.......+.|+|.+++
T Consensus         6 Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~   85 (118)
T d2ij0c1           6 QHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAH   85 (118)
T ss_dssp             EECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCC
T ss_pred             EcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccc
Confidence            334456688999999999988776778999982  32110                 12356655555557889999999


Q ss_pred             CCCCeEEEEEEEeC
Q psy16863        814 VADQAEWKCIATND  827 (1075)
Q Consensus       814 ~~D~G~Y~C~A~N~  827 (1075)
                      ++|+|.|-|.+.-.
T Consensus        86 ~~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          86 PEDSGFYVCSALAG   99 (118)
T ss_dssp             GGGCEEEEEEEECS
T ss_pred             cccCceEEEEEecC
Confidence            99999999998643

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.88  E-value=2.1e-05  Score=67.70  Aligned_cols=77  Identities=14%  Similarity=0.235  Sum_probs=53.2

Q ss_pred             eeecCceeeccCCeEEEEEEEec-CCCcEEEEEE--CCEec-------CC------CCc--EEEEEcCCEEEEEEcccCC
Q psy16863        353 IRRLHDIAVKVGTRARLLVEIRS-PTEIKIHWYR--NDRKL-------EE------NKI--YRTQHDGNFYFIDLSSVSL  414 (1075)
Q Consensus       353 ~~~~~~~~v~~G~~v~l~C~~~g-~p~~~v~W~k--~g~~l-------~~------~~~--~~~~~~g~~~~L~I~~v~~  414 (1075)
                      ...+..+.+.+|++|+|.|.... .....+.|||  .|..+       ..      ..+  ......+..+.|.|.++..
T Consensus         4 tQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   83 (114)
T d2ak4d1           4 TQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQV   83 (114)
T ss_dssp             ECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             EecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccccc
Confidence            34556778999999999998754 3345789998  23211       00      112  2233445677899999999


Q ss_pred             CCceeEEEEEEeCCC
Q psy16863        415 FDSGRWTCLAENAVG  429 (1075)
Q Consensus       415 ~d~G~Y~C~a~n~~g  429 (1075)
                      +|+|.|.|.+....+
T Consensus        84 ~Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          84 VDSAVYFCALSGFYN   98 (114)
T ss_dssp             GGCEEEEEEEECSBT
T ss_pred             ccCCCceEeCCCCCC
Confidence            999999998876543

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.88  E-value=1.1e-05  Score=68.15  Aligned_cols=74  Identities=15%  Similarity=0.316  Sum_probs=55.6

Q ss_pred             eeeecCceeeccCCeEEEEEEEecCCCcEEEEEEC--CEec------------CCCCcEEEEEcCCEEEEEEcccCCCCc
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DRKL------------EENKIYRTQHDGNFYFIDLSSVSLFDS  417 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~l------------~~~~~~~~~~~g~~~~L~I~~v~~~d~  417 (1075)
                      +...|..+.+.+|++|+|.|.........+.|||-  |+.+            ....++.....++...|.|.+++.+|+
T Consensus         4 ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d3cx5k1           4 LTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDI   83 (107)
T ss_dssp             EEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCC
T ss_pred             EECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCC
Confidence            34566778899999999999986665667999973  2211            112445555667778999999999999


Q ss_pred             eeEEEEEE
Q psy16863        418 GRWTCLAE  425 (1075)
Q Consensus       418 G~Y~C~a~  425 (1075)
                      |.|.|.+.
T Consensus        84 a~YyCa~~   91 (107)
T d3cx5k1          84 ATYFCQHH   91 (107)
T ss_dssp             SEEEEEEC
T ss_pred             CcEEeeeC
Confidence            99999764

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.88  E-value=1.5e-05  Score=69.47  Aligned_cols=86  Identities=13%  Similarity=0.229  Sum_probs=53.6

Q ss_pred             ccceeeeecCCeEEEEEEEecC----CCCeEEEEECC--E----Eee----------c----CCcEEEEEe-eCcEEEEE
Q psy16863        754 GLKSCQATVNEEFKFTVQVSIS----PEPKVSWFRDD--Q----QVV----------E----SDNVKILKE-TLGVCHLK  808 (1075)
Q Consensus       754 ~~~~~~~~~g~~~~l~C~v~g~----p~p~v~W~k~g--~----~i~----------~----~~~~~~~~~-~~~~~~L~  808 (1075)
                      .+.++.+..|++++|.|.....    ....+.|+|..  .    .+.          .    .+|+.+... ..+.+.|.
T Consensus         5 ~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   84 (119)
T d1neua_           5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIV   84 (119)
T ss_dssp             CCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEE
T ss_pred             CCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEE
Confidence            4456779999999999997632    23489998731  1    110          0    123333211 23346799


Q ss_pred             EccccCCCCeEEEEEEEeCCc--eEEEEEEEEE
Q psy16863        809 IHALEVADQAEWKCIATNDFG--QSITSCFLKL  839 (1075)
Q Consensus       809 I~~~~~~D~G~Y~C~A~N~~G--~~~~s~~l~V  839 (1075)
                      |.+++.+|+|.|.|.+.|..+  .......|.|
T Consensus        85 I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V  117 (119)
T d1neua_          85 IHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV  117 (119)
T ss_dssp             ECSCCGGGCEEEEEEEEC----CCEEEEEEEEE
T ss_pred             ECCCChHHCEEEEEEEEECCCcCceEEEEEEEE
Confidence            999999999999999998543  2333444444

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.87  E-value=3.1e-05  Score=65.02  Aligned_cols=73  Identities=21%  Similarity=0.309  Sum_probs=53.2

Q ss_pred             eccceeeeecCCeEEEEEEEecCCCCeEEEEEC--CEEee------------cCCcEEEEEeeCcEEEEEEccccCCCCe
Q psy16863        753 EGLKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQQVV------------ESDNVKILKETLGVCHLKIHALEVADQA  818 (1075)
Q Consensus       753 ~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~~i~------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G  818 (1075)
                      ..+..+.+.+|++++|.|..+......+.|||.  |+...            ...++.... ....+.|.|.+++++|+|
T Consensus         6 Q~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~l~~~Dsa   84 (107)
T d1c5cl1           6 QSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSR-SGSDYSLTISSLESEDFA   84 (107)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEE-ETTEEEEEESSCCGGGCS
T ss_pred             ccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecc-cCCEEEEEEhhhcccCCe
Confidence            334556788999999999988777778999982  32211            123444433 345789999999999999


Q ss_pred             EEEEEEEe
Q psy16863        819 EWKCIATN  826 (1075)
Q Consensus       819 ~Y~C~A~N  826 (1075)
                      .|-|.+.+
T Consensus        85 ~YyCa~~~   92 (107)
T d1c5cl1          85 DYYCLQYA   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             EEEEecCc
Confidence            99997654

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.87  E-value=4.1e-05  Score=65.07  Aligned_cols=71  Identities=15%  Similarity=0.258  Sum_probs=53.7

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEECC--Ee---c---------CCCCcEEEEEcCCEEEEEEcccCCCCceeE
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRND--RK---L---------EENKIYRTQHDGNFYFIDLSSVSLFDSGRW  420 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~g--~~---l---------~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y  420 (1075)
                      +.+.+.+|++++|.|...+..  ...+.||+..  ..   |         ....++....++....|.|.++..+|++.|
T Consensus         8 ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Y   87 (114)
T d2rhea_           8 PSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADY   87 (114)
T ss_dssp             SEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceE
Confidence            457889999999999986543  4578999832  11   1         112466666777888999999999999999


Q ss_pred             EEEEEeC
Q psy16863        421 TCLAENA  427 (1075)
Q Consensus       421 ~C~a~n~  427 (1075)
                      .|.+...
T Consensus        88 yCA~~~~   94 (114)
T d2rhea_          88 YCAAWND   94 (114)
T ss_dssp             EEEEEET
T ss_pred             EEeecCC
Confidence            9998643

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.87  E-value=3e-05  Score=66.68  Aligned_cols=78  Identities=19%  Similarity=0.311  Sum_probs=55.2

Q ss_pred             eeeecCceeeccCCeEEEEEEEecC-CCcEEEEEE--CCEe---c------------CCCCcEEEEE--cCCEEEEEEcc
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIRSP-TEIKIHWYR--NDRK---L------------EENKIYRTQH--DGNFYFIDLSS  411 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~g~-p~~~v~W~k--~g~~---l------------~~~~~~~~~~--~g~~~~L~I~~  411 (1075)
                      +...+..+.+.+|++++|.|...+. ....+.|||  .|+.   |            ....|+.+..  ......|+|.+
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISP   82 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESS
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecC
Confidence            3445677789999999999998543 456899997  2221   1            1123555543  34556899999


Q ss_pred             cCCCCceeEEEEEEeCCC
Q psy16863        412 VSLFDSGRWTCLAENAVG  429 (1075)
Q Consensus       412 v~~~d~G~Y~C~a~n~~g  429 (1075)
                      ++.+|+|.|.|.+....+
T Consensus        83 ~~~~Dsg~YyCa~~~~~~  100 (116)
T d1tvda_          83 VRTEDSATYYCAFTLPPP  100 (116)
T ss_dssp             CCGGGCEEEEEEEECTTT
T ss_pred             ccccccccceeeEecCCC
Confidence            999999999998876543

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.87  E-value=2.8e-05  Score=65.56  Aligned_cols=74  Identities=16%  Similarity=0.354  Sum_probs=56.2

Q ss_pred             eeecCceeeccCCeEEEEEEEecCCCcEEEEEEC--CEe---c---------CCCCcEEEEEcCCEEEEEEcccCCCCce
Q psy16863        353 IRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DRK---L---------EENKIYRTQHDGNFYFIDLSSVSLFDSG  418 (1075)
Q Consensus       353 ~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~---l---------~~~~~~~~~~~g~~~~L~I~~v~~~d~G  418 (1075)
                      ...|..+.+.+|++|+|.|..+......+.|||.  |..   |         ....++....++....|.|.++..+|+|
T Consensus         5 tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa   84 (107)
T d1d5il1           5 TQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMG   84 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCE
Confidence            3456678899999999999986655667899973  221   1         1124666677777789999999999999


Q ss_pred             eEEEEEEe
Q psy16863        419 RWTCLAEN  426 (1075)
Q Consensus       419 ~Y~C~a~n  426 (1075)
                      .|.|.+..
T Consensus        85 ~YyCa~~~   92 (107)
T d1d5il1          85 IYYCLQYD   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             EEEeeecc
Confidence            99997653

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=1.2e-05  Score=69.64  Aligned_cols=87  Identities=15%  Similarity=0.212  Sum_probs=56.3

Q ss_pred             ecCceeeccCCeEEEEEEEecC---CCcEEEEEECCE--e---c---------CCCCcEEEE--EcCCEEEEEEcccCCC
Q psy16863        355 RLHDIAVKVGTRARLLVEIRSP---TEIKIHWYRNDR--K---L---------EENKIYRTQ--HDGNFYFIDLSSVSLF  415 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~~g~---p~~~v~W~k~g~--~---l---------~~~~~~~~~--~~g~~~~L~I~~v~~~  415 (1075)
                      .|..+.+.+|++|+|.|.....   ....+.|+|...  .   +         ....+..+.  .......|+|.+++.+
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~   84 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   84 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence            4567888999999999997432   134678998431  1   1         112333333  3445678999999999


Q ss_pred             CceeEEEEEEeCCCceeeEEEEEeec
Q psy16863        416 DSGRWTCLAENAVGRSHCSCELSVLV  441 (1075)
Q Consensus       416 d~G~Y~C~a~n~~g~~~~s~~l~V~~  441 (1075)
                      |+|.|.|.+............|+|..
T Consensus        85 DsG~Y~C~v~~~~~~~~~~v~L~V~~  110 (116)
T d1xeda_          85 DSGRYKCGLGINSRGLSFDVSLEVLE  110 (116)
T ss_dssp             GCEEEEEEESCGGGCCEEEEEEEEEC
T ss_pred             CCEEEEEEEEcCCCCceEeEEEEEEC
Confidence            99999999864433333445666654

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=4.1e-05  Score=65.50  Aligned_cols=77  Identities=14%  Similarity=0.150  Sum_probs=54.6

Q ss_pred             eeeccceEeecCCeEEEEEEEecCCCCceEEEEeC--Ce-E--E----------ecCCcEEEEEcCC-ceEEEEEeeeee
Q psy16863        554 IKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNK--EG-V--V----------EASDKYHIMADGL-GGYSIEINYLEA  617 (1075)
Q Consensus       554 ~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~--~~-~--i----------~~~~~~~~~~~~~-~~~~L~i~~~~~  617 (1075)
                      ...|..+.+.+|++++|.|..........+.||+.  ++ +  +          ....++.+..+.. ..+.|.|.+++.
T Consensus         3 tqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   82 (114)
T d3bp5a1           3 TFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRR   82 (114)
T ss_dssp             EEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCG
T ss_pred             eECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCc
Confidence            34467788999999999999865443346899972  21 1  1          1234566655433 457899999999


Q ss_pred             cCCceEEEEEECC
Q psy16863        618 VDDGEWKCVATSS  630 (1075)
Q Consensus       618 ~d~G~Y~C~a~n~  630 (1075)
                      +|+|.|.|.+...
T Consensus        83 ~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          83 NDSGIYLCGAISL   95 (114)
T ss_dssp             GGCEEEEEEEECS
T ss_pred             CCCeEEEEEEEeC
Confidence            9999999988754

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.86  E-value=3.1e-05  Score=65.42  Aligned_cols=74  Identities=14%  Similarity=0.266  Sum_probs=56.0

Q ss_pred             eeecCceeeccCCeEEEEEEEecCCCcEEEEEEC--CE---ec---------CCCCcEEEEEcCCEEEEEEcccCCCCce
Q psy16863        353 IRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DR---KL---------EENKIYRTQHDGNFYFIDLSSVSLFDSG  418 (1075)
Q Consensus       353 ~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~---~l---------~~~~~~~~~~~g~~~~L~I~~v~~~d~G  418 (1075)
                      ...|..+.+.+|++++|.|.........+.|||.  |+   .|         ....++....++....|.|.++..+|+|
T Consensus         5 tQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa   84 (109)
T d1mqkl_           5 TQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFG   84 (109)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             ECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCe
Confidence            3456778889999999999986555557999982  22   11         1124566666778889999999999999


Q ss_pred             eEEEEEEe
Q psy16863        419 RWTCLAEN  426 (1075)
Q Consensus       419 ~Y~C~a~n  426 (1075)
                      .|.|.+..
T Consensus        85 ~YyCA~~~   92 (109)
T d1mqkl_          85 SYYCQHHY   92 (109)
T ss_dssp             EEEEEECS
T ss_pred             eEEEeeeC
Confidence            99998753

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.86  E-value=4.1e-05  Score=64.96  Aligned_cols=76  Identities=13%  Similarity=0.279  Sum_probs=55.2

Q ss_pred             eeecCceeeccCCeEEEEEEEecC--CCcEEEEEEC--C----EecCCCCcEEEEEc--CCEEEEEEcccCCCCceeEEE
Q psy16863        353 IRRLHDIAVKVGTRARLLVEIRSP--TEIKIHWYRN--D----RKLEENKIYRTQHD--GNFYFIDLSSVSLFDSGRWTC  422 (1075)
Q Consensus       353 ~~~~~~~~v~~G~~v~l~C~~~g~--p~~~v~W~k~--g----~~l~~~~~~~~~~~--g~~~~L~I~~v~~~d~G~Y~C  422 (1075)
                      ...|..+.+.+|++++|.|...+.  ....+.|||.  |    ..+..+.++....+  .+...|+|.++..+|+|.|.|
T Consensus         3 ~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   82 (112)
T d1sq2n_           3 DQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRC   82 (112)
T ss_dssp             EEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             EecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeE
Confidence            445667788999999999998543  3568999982  2    23344455554433  356789999999999999999


Q ss_pred             EEEeCC
Q psy16863        423 LAENAV  428 (1075)
Q Consensus       423 ~a~n~~  428 (1075)
                      .+....
T Consensus        83 A~~~~~   88 (112)
T d1sq2n_          83 GLGVAG   88 (112)
T ss_dssp             EECBTT
T ss_pred             EEecCC
Confidence            876543

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.86  E-value=2.2e-05  Score=68.39  Aligned_cols=78  Identities=17%  Similarity=0.207  Sum_probs=49.8

Q ss_pred             eecCceeeccCCeEEEEEEEecC----CCcEEEEEECC--E----ec----------CC----CCcEEEEE--cCCEEEE
Q psy16863        354 RRLHDIAVKVGTRARLLVEIRSP----TEIKIHWYRND--R----KL----------EE----NKIYRTQH--DGNFYFI  407 (1075)
Q Consensus       354 ~~~~~~~v~~G~~v~l~C~~~g~----p~~~v~W~k~g--~----~l----------~~----~~~~~~~~--~g~~~~L  407 (1075)
                      ..+..+.+..|++++|.|.+...    ....+.|+|..  .    .+          ..    ..|+.+..  ..+...|
T Consensus         4 ~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   83 (119)
T d1neua_           4 YTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSI   83 (119)
T ss_dssp             ECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCE
T ss_pred             cCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEE
Confidence            34567788999999999997532    24589998732  1    11          00    12333321  1223469


Q ss_pred             EEcccCCCCceeEEEEEEeCCCce
Q psy16863        408 DLSSVSLFDSGRWTCLAENAVGRS  431 (1075)
Q Consensus       408 ~I~~v~~~d~G~Y~C~a~n~~g~~  431 (1075)
                      .|.+++.+|+|.|.|.+.+..+..
T Consensus        84 ~I~~v~~~DsG~Y~C~v~~~~~~~  107 (119)
T d1neua_          84 VIHNLDYSDNGTFTCDVKNPPDIV  107 (119)
T ss_dssp             EECSCCGGGCEEEEEEEEC----C
T ss_pred             EECCCChHHCEEEEEEEEECCCcC
Confidence            999999999999999999865433

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.85  E-value=2.5e-05  Score=66.92  Aligned_cols=74  Identities=12%  Similarity=0.197  Sum_probs=52.2

Q ss_pred             eecCceeeccCCeEEEEEEEecCCCcEEEEEEC--CEec------C------CCCcE--EEEEcCCEEEEEEcccCCCCc
Q psy16863        354 RRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DRKL------E------ENKIY--RTQHDGNFYFIDLSSVSLFDS  417 (1075)
Q Consensus       354 ~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~l------~------~~~~~--~~~~~g~~~~L~I~~v~~~d~  417 (1075)
                      ..+..+.+.+|++++|.|..++. ...+.|||-  |..+      .      ...++  .....+....|+|.++..+|+
T Consensus         5 Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   83 (115)
T d1ogad1           5 QSPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDT   83 (115)
T ss_dssp             EECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGC
T ss_pred             eCCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccce
Confidence            44667889999999999998654 457999982  2111      0      11222  233345677899999999999


Q ss_pred             eeEEEEEEeCC
Q psy16863        418 GRWTCLAENAV  428 (1075)
Q Consensus       418 G~Y~C~a~n~~  428 (1075)
                      |.|.|.+....
T Consensus        84 a~YyCa~~~~~   94 (115)
T d1ogad1          84 GLYLCAGAGSQ   94 (115)
T ss_dssp             EEEEEEEECTT
T ss_pred             eeEcccccCCC
Confidence            99999887543

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.84  E-value=4.4e-05  Score=64.21  Aligned_cols=73  Identities=18%  Similarity=0.222  Sum_probs=51.7

Q ss_pred             ccceeeeecCCeEEEEEEEecCCCCeEEEEEC--CE---Ee-e--------cCCcEEEEEeeCcEEEEEEccccCCCCeE
Q psy16863        754 GLKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQ---QV-V--------ESDNVKILKETLGVCHLKIHALEVADQAE  819 (1075)
Q Consensus       754 ~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~---~i-~--------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~  819 (1075)
                      .+....+.+|++++|.|..+......+.|||-  |+   .| .        ...++... .+...+.|+|.+++++|+|.
T Consensus         7 ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~l~~~Dsa~   85 (108)
T d1jhll_           7 SPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGS-GSGTDFTLTISSLEPEDFAM   85 (108)
T ss_dssp             ECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-ESSSEEEEEECSCCTTCCSE
T ss_pred             cCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCcccccccc-CCCCEEEeEeeeeEeccceE
Confidence            34456688999999999998766668999983  21   11 1        11233333 23456889999999999999


Q ss_pred             EEEEEEeC
Q psy16863        820 WKCIATND  827 (1075)
Q Consensus       820 Y~C~A~N~  827 (1075)
                      |-|.+.+.
T Consensus        86 YyCA~~~~   93 (108)
T d1jhll_          86 YICQQHNE   93 (108)
T ss_dssp             EEEEECSS
T ss_pred             EEEeeCCC
Confidence            99976553

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.83  E-value=1.6e-05  Score=66.70  Aligned_cols=70  Identities=19%  Similarity=0.318  Sum_probs=53.0

Q ss_pred             CceeeccCCeEEEEEEEecCCCcEEEEEEC--CEec------------CCCCcEEEEEcCCEEEEEEcccCCCCceeEEE
Q psy16863        357 HDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DRKL------------EENKIYRTQHDGNFYFIDLSSVSLFDSGRWTC  422 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~l------------~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C  422 (1075)
                      +.+.+.+|++|+|.|...+.....+.|||-  |..+            ....++....+.+...|.|.++..+|+|.|.|
T Consensus         6 ~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   85 (103)
T d8faba1           6 PSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYC   85 (103)
T ss_dssp             SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEe
Confidence            457789999999999986544457899983  2211            11245666777788899999999999999999


Q ss_pred             EEEe
Q psy16863        423 LAEN  426 (1075)
Q Consensus       423 ~a~n  426 (1075)
                      .+.+
T Consensus        86 A~~~   89 (103)
T d8faba1          86 QAWD   89 (103)
T ss_dssp             EEEE
T ss_pred             eecC
Confidence            8764

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=97.81  E-value=7e-05  Score=63.85  Aligned_cols=74  Identities=15%  Similarity=0.253  Sum_probs=54.8

Q ss_pred             eccceeeeecCCeEEEEEEEecC--CCCeEEEEEC--CE----EeecCCcEEEEEee-CcEEEEEEccccCCCCeEEEEE
Q psy16863        753 EGLKSCQATVNEEFKFTVQVSIS--PEPKVSWFRD--DQ----QVVESDNVKILKET-LGVCHLKIHALEVADQAEWKCI  823 (1075)
Q Consensus       753 ~~~~~~~~~~g~~~~l~C~v~g~--p~p~v~W~k~--g~----~i~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~  823 (1075)
                      ..+..+.+.+|++++|.|.+++.  +...+.|||.  |.    .+....++....+. ...+.|+|.+++.+|+|.|.|.
T Consensus         5 Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa   84 (113)
T d1vesa_           5 QTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQ   84 (113)
T ss_dssp             EECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             eeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeee
Confidence            34556778899999999999753  4467999972  22    33445566655443 3467999999999999999999


Q ss_pred             EEe
Q psy16863        824 ATN  826 (1075)
Q Consensus       824 A~N  826 (1075)
                      +..
T Consensus        85 ~~~   87 (113)
T d1vesa_          85 AFY   87 (113)
T ss_dssp             EEE
T ss_pred             eec
Confidence            854

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.81  E-value=5.6e-05  Score=65.11  Aligned_cols=77  Identities=19%  Similarity=0.295  Sum_probs=56.1

Q ss_pred             eeeecCceeeccCCeEEEEEEEecCCCcEEEEEE--CCEec-----------------CCCCcEEEEE-cCCEEEEEEcc
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYR--NDRKL-----------------EENKIYRTQH-DGNFYFIDLSS  411 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k--~g~~l-----------------~~~~~~~~~~-~g~~~~L~I~~  411 (1075)
                      +...|....+.+|++++|.|...+.....+.|||  .|+.+                 ....++.+.. .++...|+|.+
T Consensus         4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~   83 (118)
T d2ij0c1           4 VSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTS   83 (118)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECS
T ss_pred             EEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccc
Confidence            4455667789999999999998666667899998  23211                 0123455443 45567899999


Q ss_pred             cCCCCceeEEEEEEeCC
Q psy16863        412 VSLFDSGRWTCLAENAV  428 (1075)
Q Consensus       412 v~~~d~G~Y~C~a~n~~  428 (1075)
                      +..+|+|.|.|.+....
T Consensus        84 ~~~~Dsa~YyCa~~~~~  100 (118)
T d2ij0c1          84 AHPEDSGFYVCSALAGS  100 (118)
T ss_dssp             CCGGGCEEEEEEEECSS
T ss_pred             cccccCceEEEEEecCC
Confidence            99999999999986543

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.81  E-value=2.5e-05  Score=66.71  Aligned_cols=73  Identities=15%  Similarity=0.201  Sum_probs=51.7

Q ss_pred             eecCceeeccCCeEEEEEEEecCCCcEEEEEEC--CEec-------C-----CCCcEE--EEEcCCEEEEEEcccCCCCc
Q psy16863        354 RRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DRKL-------E-----ENKIYR--TQHDGNFYFIDLSSVSLFDS  417 (1075)
Q Consensus       354 ~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~l-------~-----~~~~~~--~~~~g~~~~L~I~~v~~~d~  417 (1075)
                      ..|..+.+.+|++++|.|.........+.|||-  |...       .     ...+..  ....+....|.|.++..+|+
T Consensus         4 Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   83 (110)
T d1u3ha1           4 QSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDS   83 (110)
T ss_dssp             CSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSC
T ss_pred             ecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCc
Confidence            345667889999999999986655557999983  2211       0     011222  22345667899999999999


Q ss_pred             eeEEEEEEe
Q psy16863        418 GRWTCLAEN  426 (1075)
Q Consensus       418 G~Y~C~a~n  426 (1075)
                      |.|.|.+..
T Consensus        84 a~YyCa~~~   92 (110)
T d1u3ha1          84 ATYFCAASA   92 (110)
T ss_dssp             SEEEECCEE
T ss_pred             eeEeeeecC
Confidence            999998764

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.80  E-value=2.8e-05  Score=65.35  Aligned_cols=84  Identities=13%  Similarity=0.163  Sum_probs=51.7

Q ss_pred             eeecceeEEeeCCeEEEEEEecCCCeeEEEEc---cCCCeeEEEeeCCC-ceeccCcEEEEecCCeEEEEEceeccCCCe
Q psy16863        139 IRRLHDIAVKVGTRARLLVEIRSPTEIKCQFD---LNNTIPFSFRAQGD-HPIFGNRFRAINRDGRTELNIRRVRRDDGG  214 (1075)
Q Consensus       139 ~~~~~~~~v~~G~~~~l~c~~~~~~~~~c~~~---~~~~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G  214 (1075)
                      ...+..+.+.+|++++|.|..+....-...|.   ....+.+.++.... ......||.....+..+.|+|.+++.+|+|
T Consensus         5 tQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa   84 (106)
T d1i8ka_           5 TQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVG   84 (106)
T ss_dssp             EEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCE
Confidence            34456778899999999998765321112221   11111222221111 111345776666667789999999999999


Q ss_pred             EEEEEEEc
Q psy16863        215 RYSVTASN  222 (1075)
Q Consensus       215 ~Y~C~a~n  222 (1075)
                      .|.|.+.+
T Consensus        85 ~YyCa~~~   92 (106)
T d1i8ka_          85 DYYCLQSF   92 (106)
T ss_dssp             EEEEEECS
T ss_pred             EEeEecCc
Confidence            99997654

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.80  E-value=1.8e-05  Score=68.07  Aligned_cols=75  Identities=15%  Similarity=0.184  Sum_probs=52.0

Q ss_pred             eeecCceeeccCCeEEEEEEEecCCCcEEEEEE--CCEe---c---C-C--------CCcEEEEEcCCEEEEEEcccCCC
Q psy16863        353 IRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYR--NDRK---L---E-E--------NKIYRTQHDGNFYFIDLSSVSLF  415 (1075)
Q Consensus       353 ~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k--~g~~---l---~-~--------~~~~~~~~~g~~~~L~I~~v~~~  415 (1075)
                      ..++..+.+.+|++++|.|.........+.|||  .|..   |   . .        ..+......++...|+|.++..+
T Consensus         4 ~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1i9ea_           4 TQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWS   83 (115)
T ss_dssp             ECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGG
T ss_pred             EcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccccc
Confidence            334456789999999999998766567889998  2221   1   0 1        11222233445567999999999


Q ss_pred             CceeEEEEEEeC
Q psy16863        416 DSGRWTCLAENA  427 (1075)
Q Consensus       416 d~G~Y~C~a~n~  427 (1075)
                      |+|.|.|.+...
T Consensus        84 Dsg~YyCa~~~~   95 (115)
T d1i9ea_          84 DSAVYFCAVSGF   95 (115)
T ss_dssp             GCEEEEEEEEET
T ss_pred             ccceecccccCC
Confidence            999999987643

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.80  E-value=5.7e-05  Score=63.79  Aligned_cols=73  Identities=21%  Similarity=0.312  Sum_probs=53.6

Q ss_pred             eccceeeeecCCeEEEEEEEecCCCCeEEEEEC--CE---Eee---------cCCcEEEEEeeCcEEEEEEccccCCCCe
Q psy16863        753 EGLKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQ---QVV---------ESDNVKILKETLGVCHLKIHALEVADQA  818 (1075)
Q Consensus       753 ~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~---~i~---------~~~~~~~~~~~~~~~~L~I~~~~~~D~G  818 (1075)
                      ..+....+.+|++|+|.|..+......+.|||-  |+   .|.         ...++.... ......|+|.+++++|+|
T Consensus         6 QsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~l~~~DSa   84 (107)
T d1kcvl1           6 QSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSG-SATDFTLTISSVQADDDA   84 (107)
T ss_dssp             ESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCGGGCE
T ss_pred             CcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeec-cCCeeecEEHhheecCCc
Confidence            334556788999999999988776668999983  22   111         134555543 445789999999999999


Q ss_pred             EEEEEEEe
Q psy16863        819 EWKCIATN  826 (1075)
Q Consensus       819 ~Y~C~A~N  826 (1075)
                      .|-|.+..
T Consensus        85 ~YyCa~~~   92 (107)
T d1kcvl1          85 DYYCGQSY   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             eEEEEecC
Confidence            99997643

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.80  E-value=3.9e-05  Score=64.57  Aligned_cols=73  Identities=15%  Similarity=0.384  Sum_probs=52.3

Q ss_pred             eccceEeecCCeEEEEEEEecCCCCceEEEEeCC--eE---E---------ecCCcEEEEEcCCceEEEEEeeeeecCCc
Q psy16863        556 EVENVKAKIGTSAILECQVLVPPWPRSIYWYNKE--GV---V---------EASDKYHIMADGLGGYSIEINYLEAVDDG  621 (1075)
Q Consensus       556 ~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~--~~---i---------~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  621 (1075)
                      .|..+.+.+|++++|.|..+..... .+.||+..  +.   +         ....++....++ ..+.|+|.+++.+|+|
T Consensus         7 sP~~ltv~~G~svtl~C~~s~~~~~-~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~-~~~~L~I~~~~~~Dsa   84 (107)
T d1ospl1           7 SSSSFSVSLGDRVTITCKASEDIYS-RLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSG-KDYTLSITSLQTEDVA   84 (107)
T ss_dssp             CCSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSS-SSEEEEESSCCGGGCS
T ss_pred             eCCEEEECCCCCEEEEEecCCCccc-ccEEEEcCCCccceeEEeeccccCCccccccceecCC-CeEEeEEcccccccCC
Confidence            3566788999999999998766544 69999731  11   1         012355554333 4578999999999999


Q ss_pred             eEEEEEECC
Q psy16863        622 EWKCVATSS  630 (1075)
Q Consensus       622 ~Y~C~a~n~  630 (1075)
                      .|.|.+...
T Consensus        85 ~YyCa~~~~   93 (107)
T d1ospl1          85 TYFCQQYWS   93 (107)
T ss_dssp             EEEEEECSS
T ss_pred             cEEEeeccC
Confidence            999987643

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.80  E-value=4.6e-05  Score=64.26  Aligned_cols=73  Identities=14%  Similarity=0.188  Sum_probs=53.7

Q ss_pred             eccceeeeecCCeEEEEEEEecCCCCeEEEEEC--CEEee------------cCCcEEEEEeeCcEEEEEEccccCCCCe
Q psy16863        753 EGLKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQQVV------------ESDNVKILKETLGVCHLKIHALEVADQA  818 (1075)
Q Consensus       753 ~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~~i~------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G  818 (1075)
                      ..+..+.+.+|++++|.|.........+.|||.  |+.+.            ...++..... ...+.|+|.+++++|+|
T Consensus         6 Q~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~-~~~~~L~I~~~~~~Dsa   84 (107)
T d1j1pl_           6 QSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGS-GTDFTLSINSVETEDFG   84 (107)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-TTEEEEEESSCCGGGCE
T ss_pred             CcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceeccc-CCEEEEEEcccCcCCCE
Confidence            334556789999999999987666678999983  22110            1245665443 45789999999999999


Q ss_pred             EEEEEEEe
Q psy16863        819 EWKCIATN  826 (1075)
Q Consensus       819 ~Y~C~A~N  826 (1075)
                      .|-|.+.+
T Consensus        85 ~YyCa~~~   92 (107)
T d1j1pl_          85 MYFCQQAN   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEcCC
Confidence            99997654

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=7.8e-05  Score=61.57  Aligned_cols=81  Identities=14%  Similarity=0.277  Sum_probs=54.2

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEec--CCCcEEEEEECCEecCCCCc--EEEEEcCCEEEEEEcccCCCCceeEEEEE
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRS--PTEIKIHWYRNDRKLEENKI--YRTQHDGNFYFIDLSSVSLFDSGRWTCLA  424 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g--~p~~~v~W~k~g~~l~~~~~--~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a  424 (1075)
                      +|.+...+ ...+..|+.++|.|.+.|  .+...|+|++||.++.....  .....+|.........+..++.+.|+|.+
T Consensus         5 ~P~V~v~~-~~~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V   83 (100)
T d1k5nb_           5 TPKIQVYS-RHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRV   83 (100)
T ss_dssp             CCEEEEEE-SSCCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEE
T ss_pred             CCeeEEEc-CCcccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEEE
Confidence            55543322 123467899999999988  34679999999999864322  23334555544444455667778999999


Q ss_pred             EeCCCc
Q psy16863        425 ENAVGR  430 (1075)
Q Consensus       425 ~n~~g~  430 (1075)
                      .+....
T Consensus        84 ~H~sl~   89 (100)
T d1k5nb_          84 NHVTLS   89 (100)
T ss_dssp             ECTTCS
T ss_pred             EeCCCC
Confidence            987543

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.79  E-value=6.3e-05  Score=63.08  Aligned_cols=72  Identities=14%  Similarity=0.229  Sum_probs=53.0

Q ss_pred             eeecCceeeccCCeEEEEEEEecCCCcEEEEEECC--Eec------------CCCCcEEEEEcCCEEEEEEcccCCCCce
Q psy16863        353 IRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRND--RKL------------EENKIYRTQHDGNFYFIDLSSVSLFDSG  418 (1075)
Q Consensus       353 ~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g--~~l------------~~~~~~~~~~~g~~~~L~I~~v~~~d~G  418 (1075)
                      ...|..+.+.+|++++|.|..+.. ...+.||+..  ..+            ....++.....+....|.|.++..+|+|
T Consensus         4 tQsP~~l~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa   82 (104)
T d1yqvl1           4 TQSPAIMSASPGEKVTMTCSASSS-VNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAA   82 (104)
T ss_dssp             EEESSEEEECTTCCEEEEEEESSC-CSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             eCcCCeEEECCCCCEEEEEEeCCC-CCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCC
Confidence            345677889999999999987543 4457999832  111            1134556666777889999999999999


Q ss_pred             eEEEEEE
Q psy16863        419 RWTCLAE  425 (1075)
Q Consensus       419 ~Y~C~a~  425 (1075)
                      .|.|.+.
T Consensus        83 ~YyCa~~   89 (104)
T d1yqvl1          83 TYYCQQW   89 (104)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEec
Confidence            9999753

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.79  E-value=5.7e-05  Score=64.60  Aligned_cols=74  Identities=14%  Similarity=0.198  Sum_probs=51.4

Q ss_pred             cceeeeecCCeEEEEEEEecCCCCeEEEEEC--CEE---e---------ecCCcEEEEEe-eCcEEEEEEccccCCCCeE
Q psy16863        755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQQ---V---------VESDNVKILKE-TLGVCHLKIHALEVADQAE  819 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~~---i---------~~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~  819 (1075)
                      +....+.+|++++|.|..++. ...+.|||-  |+.   +         ....++..... ....+.|.|.+++.+|+|.
T Consensus         7 P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   85 (115)
T d1ogad1           7 PQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGL   85 (115)
T ss_dssp             CSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceee
Confidence            445668899999999998764 347999982  211   1         11233433332 2347889999999999999


Q ss_pred             EEEEEEeCCc
Q psy16863        820 WKCIATNDFG  829 (1075)
Q Consensus       820 Y~C~A~N~~G  829 (1075)
                      |.|.+....+
T Consensus        86 YyCa~~~~~~   95 (115)
T d1ogad1          86 YLCAGAGSQG   95 (115)
T ss_dssp             EEEEEECTTS
T ss_pred             EcccccCCCC
Confidence            9998875443

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.79  E-value=4.5e-05  Score=65.02  Aligned_cols=74  Identities=12%  Similarity=0.189  Sum_probs=53.0

Q ss_pred             eeecCceeeccCCeEEEEEEEecCCCcEEEEEEC--CEec-------C-----CCCcEEE--EEcCCEEEEEEcccCCCC
Q psy16863        353 IRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DRKL-------E-----ENKIYRT--QHDGNFYFIDLSSVSLFD  416 (1075)
Q Consensus       353 ~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~l-------~-----~~~~~~~--~~~g~~~~L~I~~v~~~d  416 (1075)
                      ...+..+.+.+|++++|.|...+.....+.||+-  |+.+       .     ...++..  ...++...|.|.++..+|
T Consensus         4 ~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (111)
T d1bd2d1           4 KQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGD   83 (111)
T ss_dssp             ECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred             EccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccc
Confidence            3445667789999999999986665667999982  3211       0     1123333  334567899999999999


Q ss_pred             ceeEEEEEEe
Q psy16863        417 SGRWTCLAEN  426 (1075)
Q Consensus       417 ~G~Y~C~a~n  426 (1075)
                      +|.|.|.+..
T Consensus        84 sa~YyCa~~~   93 (111)
T d1bd2d1          84 SAVYFCAAME   93 (111)
T ss_dssp             CEEEEEEEES
T ss_pred             cEEEEeeccC
Confidence            9999998764

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.77  E-value=3.9e-05  Score=64.61  Aligned_cols=72  Identities=18%  Similarity=0.319  Sum_probs=54.2

Q ss_pred             cCceeeccCCeEEEEEEEecCCCcEEEEEEC--CEec------------CCCCcEEEEEcCCEEEEEEcccCCCCceeEE
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DRKL------------EENKIYRTQHDGNFYFIDLSSVSLFDSGRWT  421 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~l------------~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~  421 (1075)
                      ++.+.+.+|++++|.|.........+.|||.  |+.+            ....++....++....|.|.+++.+|+|.|.
T Consensus         7 p~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYy   86 (109)
T d1w72l1           7 PPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYY   86 (109)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEE
Confidence            3457888999999999975444457999973  2211            1134566677788889999999999999999


Q ss_pred             EEEEeC
Q psy16863        422 CLAENA  427 (1075)
Q Consensus       422 C~a~n~  427 (1075)
                      |.+...
T Consensus        87 CA~~~~   92 (109)
T d1w72l1          87 CQVWDS   92 (109)
T ss_dssp             EEEEET
T ss_pred             EEecCC
Confidence            998654

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.77  E-value=4.4e-05  Score=65.61  Aligned_cols=75  Identities=17%  Similarity=0.243  Sum_probs=53.5

Q ss_pred             ccceeeeecCCeEEEEEEEecC-CCCeEEEEE--CCE-E--ee------------cCCcEEEEEee-CcEEEEEEccccC
Q psy16863        754 GLKSCQATVNEEFKFTVQVSIS-PEPKVSWFR--DDQ-Q--VV------------ESDNVKILKET-LGVCHLKIHALEV  814 (1075)
Q Consensus       754 ~~~~~~~~~g~~~~l~C~v~g~-p~p~v~W~k--~g~-~--i~------------~~~~~~~~~~~-~~~~~L~I~~~~~  814 (1075)
                      .+....+.+|++++|.|..++. ....+.|||  .|+ +  |.            ...++.+.... ...+.|+|.+++.
T Consensus         6 ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   85 (116)
T d1tvda_           6 SSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRT   85 (116)
T ss_dssp             CSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCG
T ss_pred             cCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCccc
Confidence            3445678899999999998653 466899997  222 1  11            12466655433 3467899999999


Q ss_pred             CCCeEEEEEEEeCC
Q psy16863        815 ADQAEWKCIATNDF  828 (1075)
Q Consensus       815 ~D~G~Y~C~A~N~~  828 (1075)
                      +|+|.|.|.+....
T Consensus        86 ~Dsg~YyCa~~~~~   99 (116)
T d1tvda_          86 EDSATYYCAFTLPP   99 (116)
T ss_dssp             GGCEEEEEEEECTT
T ss_pred             cccccceeeEecCC
Confidence            99999999887543

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=8.6e-06  Score=67.84  Aligned_cols=68  Identities=19%  Similarity=0.363  Sum_probs=47.4

Q ss_pred             eeeccCCeEEEEEEEecCCCcEEEEEECCEe--cCC------------CCcEEEEE---cCCEEEEEEcccCCCCceeEE
Q psy16863        359 IAVKVGTRARLLVEIRSPTEIKIHWYRNDRK--LEE------------NKIYRTQH---DGNFYFIDLSSVSLFDSGRWT  421 (1075)
Q Consensus       359 ~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~--l~~------------~~~~~~~~---~g~~~~L~I~~v~~~d~G~Y~  421 (1075)
                      +...+|++|+|.|.........+.|++....  +..            ..++....   +.....|.|.+++.+|+|.|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            4567999999999987777778999985432  100            11222211   112346999999999999999


Q ss_pred             EEEEe
Q psy16863        422 CLAEN  426 (1075)
Q Consensus       422 C~a~n  426 (1075)
                      |.+.+
T Consensus        84 C~v~~   88 (97)
T d2nxyb1          84 CEVED   88 (97)
T ss_dssp             EEETT
T ss_pred             EEEec
Confidence            99954

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.76  E-value=4.1e-05  Score=65.17  Aligned_cols=72  Identities=10%  Similarity=0.230  Sum_probs=54.4

Q ss_pred             cCceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEe---c---------CCCCcEEEEEcCCEEEEEEcccCCCCcee
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRK---L---------EENKIYRTQHDGNFYFIDLSSVSLFDSGR  419 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~---l---------~~~~~~~~~~~g~~~~L~I~~v~~~d~G~  419 (1075)
                      ++.+.+.+|++++|.|..++..  ...+.||+-  |..   |         ....++....+++.+.|.|.+++.+|+|.
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~   86 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcc
Confidence            3467899999999999985532  346999973  211   1         12356777777888899999999999999


Q ss_pred             EEEEEEeC
Q psy16863        420 WTCLAENA  427 (1075)
Q Consensus       420 Y~C~a~n~  427 (1075)
                      |.|.+...
T Consensus        87 YyCA~~~~   94 (111)
T d1rzfl1          87 YYCGTWDS   94 (111)
T ss_dssp             EEEEEEET
T ss_pred             eEEeecCC
Confidence            99988654

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.76  E-value=3.6e-05  Score=65.17  Aligned_cols=72  Identities=17%  Similarity=0.274  Sum_probs=54.6

Q ss_pred             eecCceeeccCCeEEEEEEEecC-CCcEEEEEEC--CE---ec---------CCCCcEEEEEcCCEEEEEEcccCCCCce
Q psy16863        354 RRLHDIAVKVGTRARLLVEIRSP-TEIKIHWYRN--DR---KL---------EENKIYRTQHDGNFYFIDLSSVSLFDSG  418 (1075)
Q Consensus       354 ~~~~~~~v~~G~~v~l~C~~~g~-p~~~v~W~k~--g~---~l---------~~~~~~~~~~~g~~~~L~I~~v~~~d~G  418 (1075)
                      ..|..+.+.+|++++|.|..... ....+.|||.  |.   .|         ....++.....++.+.|+|.++..+|+|
T Consensus         6 Q~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa   85 (108)
T d2fx7l1           6 QSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFA   85 (108)
T ss_dssp             CSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             eeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccE
Confidence            44567789999999999998543 2457899983  32   11         1234667777788889999999999999


Q ss_pred             eEEEEEE
Q psy16863        419 RWTCLAE  425 (1075)
Q Consensus       419 ~Y~C~a~  425 (1075)
                      .|.|.+.
T Consensus        86 ~YyCa~~   92 (108)
T d2fx7l1          86 VYYCQQY   92 (108)
T ss_dssp             EEEEEEC
T ss_pred             EEeeecC
Confidence            9999864

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.75  E-value=3.7e-05  Score=66.08  Aligned_cols=72  Identities=14%  Similarity=0.273  Sum_probs=49.0

Q ss_pred             ceeeeecCCeEEEEEEEecCCCCeEEEEE--CCE---Eee---c-------CCcEEEE-EeeCcEEEEEEccccCCCCeE
Q psy16863        756 KSCQATVNEEFKFTVQVSISPEPKVSWFR--DDQ---QVV---E-------SDNVKIL-KETLGVCHLKIHALEVADQAE  819 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g~p~p~v~W~k--~g~---~i~---~-------~~~~~~~-~~~~~~~~L~I~~~~~~D~G~  819 (1075)
                      ..+.+.+|++++|.|.........+.|||  .|+   .|.   .       ..+.... ......+.|+|.+++++|+|.
T Consensus         8 ~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~   87 (115)
T d1i9ea_           8 ARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAV   87 (115)
T ss_dssp             SEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCEE
T ss_pred             CeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccce
Confidence            34568999999999998876667889997  222   111   0       1111111 112234679999999999999


Q ss_pred             EEEEEEeC
Q psy16863        820 WKCIATND  827 (1075)
Q Consensus       820 Y~C~A~N~  827 (1075)
                      |.|.+...
T Consensus        88 YyCa~~~~   95 (115)
T d1i9ea_          88 YFCAVSGF   95 (115)
T ss_dssp             EEEEEEET
T ss_pred             ecccccCC
Confidence            99987643

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=97.74  E-value=0.00011  Score=62.68  Aligned_cols=75  Identities=16%  Similarity=0.256  Sum_probs=54.9

Q ss_pred             eeeecCceeeccCCeEEEEEEEecC--CCcEEEEEE--CCE----ecCCCCcEEEEE--cCCEEEEEEcccCCCCceeEE
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIRSP--TEIKIHWYR--NDR----KLEENKIYRTQH--DGNFYFIDLSSVSLFDSGRWT  421 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~g~--p~~~v~W~k--~g~----~l~~~~~~~~~~--~g~~~~L~I~~v~~~d~G~Y~  421 (1075)
                      +...|..+.+.+|++++|.|..++.  ....+.|||  .|.    .+....++....  ..+...|+|.+++.+|+|.|.
T Consensus         3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   82 (113)
T d1vesa_           3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYK   82 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEe
Confidence            3455677889999999999998653  346799997  232    233344554443  345678999999999999999


Q ss_pred             EEEEe
Q psy16863        422 CLAEN  426 (1075)
Q Consensus       422 C~a~n  426 (1075)
                      |.+..
T Consensus        83 Ca~~~   87 (113)
T d1vesa_          83 CQAFY   87 (113)
T ss_dssp             EEEEE
T ss_pred             eeeec
Confidence            99854

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.74  E-value=5.7e-05  Score=64.02  Aligned_cols=74  Identities=12%  Similarity=0.211  Sum_probs=54.7

Q ss_pred             eeecCceeeccCCeEEEEEEEecC----CCcEEEEEEC--CEec------------CCCCcEEEEEcCCEEEEEEcccCC
Q psy16863        353 IRRLHDIAVKVGTRARLLVEIRSP----TEIKIHWYRN--DRKL------------EENKIYRTQHDGNFYFIDLSSVSL  414 (1075)
Q Consensus       353 ~~~~~~~~v~~G~~v~l~C~~~g~----p~~~v~W~k~--g~~l------------~~~~~~~~~~~g~~~~L~I~~v~~  414 (1075)
                      ...|..+.+.+|++|+|.|..++.    ....+.|||.  |..+            ....++.....+..+.|+|.++..
T Consensus         5 tQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~   84 (111)
T d2gsia1           5 TQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEE   84 (111)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             EeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccc
Confidence            345667889999999999987542    1234899983  3211            113567777777888999999999


Q ss_pred             CCceeEEEEEEe
Q psy16863        415 FDSGRWTCLAEN  426 (1075)
Q Consensus       415 ~d~G~Y~C~a~n  426 (1075)
                      +|+|.|.|.+..
T Consensus        85 ~DsA~YyCa~~~   96 (111)
T d2gsia1          85 EDAATYYCSHIR   96 (111)
T ss_dssp             GGCEEEEEEECS
T ss_pred             cCCceEEEEECC
Confidence            999999997653

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=1.8e-05  Score=67.07  Aligned_cols=79  Identities=14%  Similarity=0.131  Sum_probs=49.3

Q ss_pred             eEEeeCCeEEEEEEecCCCe----eEEEEccCCCeeEEEeeCCCcee--ccCcEEEEecCCeEEEEEceeccCCCeEEEE
Q psy16863        145 IAVKVGTRARLLVEIRSPTE----IKCQFDLNNTIPFSFRAQGDHPI--FGNRFRAINRDGRTELNIRRVRRDDGGRYSV  218 (1075)
Q Consensus       145 ~~v~~G~~~~l~c~~~~~~~----~~c~~~~~~~~~~~W~~~~~~~~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C  218 (1075)
                      ++...|++|+|.|....+..    +.+.|.......+.+..+.....  ..+|..... .+..+|.|.+++.+|+|.|.|
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~-~g~~sL~I~~v~~~D~G~Y~C   82 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDI-TNNLSIVILALRPSDEGTYEC   82 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEES-TTTTEEEECSCCGGGCEEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeecc-CCcEEEEECcCChHHCeEEEE
Confidence            45678999999998765321    44555443333333332111111  234555443 345689999999999999999


Q ss_pred             EEEcCc
Q psy16863        219 TASNES  224 (1075)
Q Consensus       219 ~a~n~~  224 (1075)
                      .+.+..
T Consensus        83 ~V~~~~   88 (105)
T d1dr9a1          83 VVLKYE   88 (105)
T ss_dssp             EEEECC
T ss_pred             EEEeCC
Confidence            997643

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.74  E-value=2.8e-05  Score=66.90  Aligned_cols=75  Identities=13%  Similarity=0.274  Sum_probs=52.5

Q ss_pred             eeecCceeeccCCeEEEEEEEecCCCcEEEEEEC--CEe---c---CC-------CCcEEEE--EcCCEEEEEEcccCCC
Q psy16863        353 IRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DRK---L---EE-------NKIYRTQ--HDGNFYFIDLSSVSLF  415 (1075)
Q Consensus       353 ~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~---l---~~-------~~~~~~~--~~g~~~~L~I~~v~~~  415 (1075)
                      ...+..+.+.+|++++|.|.........+.|||-  |+.   |   ..       ..++...  .......|+|.++..+
T Consensus         4 tQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1j8hd1           4 TQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMS   83 (115)
T ss_dssp             ECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGG
T ss_pred             EcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeecccccc
Confidence            3445678899999999999987665678999982  221   1   00       1122222  2233457999999999


Q ss_pred             CceeEEEEEEeC
Q psy16863        416 DSGRWTCLAENA  427 (1075)
Q Consensus       416 d~G~Y~C~a~n~  427 (1075)
                      |+|.|.|.+...
T Consensus        84 Dsa~YyCa~~~~   95 (115)
T d1j8hd1          84 DAAEYFCAVSES   95 (115)
T ss_dssp             GCEEEEEEEESS
T ss_pred             CCccceeeecCC
Confidence            999999998764

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.73  E-value=2.8e-05  Score=66.76  Aligned_cols=74  Identities=12%  Similarity=0.172  Sum_probs=52.4

Q ss_pred             ccceeeeecCCeEEEEEEEecCCCCeEEEEEC--CE---Eee---------cCCcEEEEEe-eCcEEEEEEccccCCCCe
Q psy16863        754 GLKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQ---QVV---------ESDNVKILKE-TLGVCHLKIHALEVADQA  818 (1075)
Q Consensus       754 ~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~---~i~---------~~~~~~~~~~-~~~~~~L~I~~~~~~D~G  818 (1075)
                      .+..+.+.+|++++|+|.........+.|||.  |+   .|.         ...++.+..+ ....+.|.|.+++++|+|
T Consensus         7 ~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg   86 (115)
T d1lp9e1           7 TEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSA   86 (115)
T ss_dssp             CCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCE
T ss_pred             CCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCc
Confidence            34456688999999999998777788999983  22   110         1223443322 223567999999999999


Q ss_pred             EEEEEEEeC
Q psy16863        819 EWKCIATND  827 (1075)
Q Consensus       819 ~Y~C~A~N~  827 (1075)
                      .|.|.+...
T Consensus        87 ~YyCa~~~~   95 (115)
T d1lp9e1          87 LYYCALFLA   95 (115)
T ss_dssp             EEEEEEEEC
T ss_pred             cceEEEEcC
Confidence            999987654

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.73  E-value=7.7e-05  Score=63.51  Aligned_cols=72  Identities=13%  Similarity=0.163  Sum_probs=51.7

Q ss_pred             cceeeeecCCeEEEEEEEecCCCCeEEEEEC--CEE---ee---------cCCcEEEEEe-eCcEEEEEEccccCCCCeE
Q psy16863        755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQQ---VV---------ESDNVKILKE-TLGVCHLKIHALEVADQAE  819 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~~---i~---------~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~  819 (1075)
                      +..+.+.+|++++|.|..+......+.|||-  |+.   |.         ...++..... ....+.|.|.+++++|+|.
T Consensus         7 p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   86 (111)
T d1bd2d1           7 SPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAV   86 (111)
T ss_dssp             CSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEE
T ss_pred             CCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEE
Confidence            3445688999999999988766678999982  221   11         1234444332 2457899999999999999


Q ss_pred             EEEEEEe
Q psy16863        820 WKCIATN  826 (1075)
Q Consensus       820 Y~C~A~N  826 (1075)
                      |.|.+..
T Consensus        87 YyCa~~~   93 (111)
T d1bd2d1          87 YFCAAME   93 (111)
T ss_dssp             EEEEEES
T ss_pred             EEeeccC
Confidence            9998764

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.73  E-value=7.6e-05  Score=62.75  Aligned_cols=71  Identities=21%  Similarity=0.296  Sum_probs=51.7

Q ss_pred             cceeeeecCCeEEEEEEEecCCCCeEEEEEC--CE---Eee---------cCCcEEEEEeeCcEEEEEEccccCCCCeEE
Q psy16863        755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQ---QVV---------ESDNVKILKETLGVCHLKIHALEVADQAEW  820 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~---~i~---------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y  820 (1075)
                      +....+.+|++++|.|..+..-...+.|||-  |+   .|.         ...++..... ...+.|.|.+++++|+|.|
T Consensus         8 p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~-~~~~~L~I~~~~~~DsA~Y   86 (107)
T d1mexl1           8 QKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGS-GTDFTLTINNVQSEDLAEY   86 (107)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-TTEEEEEESSCCGGGCSEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCC-CCeeeeeechhheecceeE
Confidence            3445688999999999987665567999973  22   111         1245655443 4578999999999999999


Q ss_pred             EEEEEe
Q psy16863        821 KCIATN  826 (1075)
Q Consensus       821 ~C~A~N  826 (1075)
                      -|.+.+
T Consensus        87 yCa~~~   92 (107)
T d1mexl1          87 FCQQYN   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEeECC
Confidence            997643

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.72  E-value=5.6e-05  Score=64.43  Aligned_cols=73  Identities=12%  Similarity=0.206  Sum_probs=54.4

Q ss_pred             cCceeeccCCeEEEEEEEecC---CCcEEEEEEC--CEec------------CCCCcEEEEEcCCEEEEEEcccCCCCce
Q psy16863        356 LHDIAVKVGTRARLLVEIRSP---TEIKIHWYRN--DRKL------------EENKIYRTQHDGNFYFIDLSSVSLFDSG  418 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~---p~~~v~W~k~--g~~l------------~~~~~~~~~~~g~~~~L~I~~v~~~d~G  418 (1075)
                      |..+.+.+|++|+|.|...+.   ....+.|||.  |+.+            ....++.....++...|.|.+++.+|+|
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   86 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEA   86 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCE
Confidence            456789999999999998653   2346899982  2211            1234566667778889999999999999


Q ss_pred             eEEEEEEeCC
Q psy16863        419 RWTCLAENAV  428 (1075)
Q Consensus       419 ~Y~C~a~n~~  428 (1075)
                      .|.|.+.+..
T Consensus        87 ~YyCa~~~~~   96 (112)
T d1lgva1          87 DYYCSSYDGS   96 (112)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEEeeecCC
Confidence            9999886543

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=0.00016  Score=59.69  Aligned_cols=70  Identities=14%  Similarity=0.265  Sum_probs=49.5

Q ss_pred             eccCCeEEEEEEEecC-C-CcEEEEEECCEecCCCCcEEE--EEcCCEEEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863        361 VKVGTRARLLVEIRSP-T-EIKIHWYRNDRKLEENKIYRT--QHDGNFYFIDLSSVSLFDSGRWTCLAENAVGR  430 (1075)
Q Consensus       361 v~~G~~v~l~C~~~g~-p-~~~v~W~k~g~~l~~~~~~~~--~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~  430 (1075)
                      ...|+.++|.|.+.|. | ...|+|++||.++........  ..+|.........+..++.+.|+|.+.+.+-.
T Consensus        15 ~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~sl~   88 (99)
T d1lk2b_          15 PENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDSMA   88 (99)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECTTSS
T ss_pred             ccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeCCCC
Confidence            4568889999999883 3 679999999999876543322  23455444444445667778999999987543

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.71  E-value=7.6e-05  Score=62.89  Aligned_cols=71  Identities=11%  Similarity=0.125  Sum_probs=53.3

Q ss_pred             cCceeeccCCeEEEEEEEecCC---CcEEEEEE--CCEec------------CCCCcEEEEEcCCEEEEEEcccCCCCce
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPT---EIKIHWYR--NDRKL------------EENKIYRTQHDGNFYFIDLSSVSLFDSG  418 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p---~~~v~W~k--~g~~l------------~~~~~~~~~~~g~~~~L~I~~v~~~d~G  418 (1075)
                      ++.+.+.+|++++|.|..++..   ...+.|||  .|+.+            .-..++.....++...|.|.++..+|+|
T Consensus         7 ~~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa   86 (110)
T d1oaql_           7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEA   86 (110)
T ss_dssp             CSEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCE
T ss_pred             CCCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccE
Confidence            3467889999999999996532   22488997  22211            1135677777788889999999999999


Q ss_pred             eEEEEEEe
Q psy16863        419 RWTCLAEN  426 (1075)
Q Consensus       419 ~Y~C~a~n  426 (1075)
                      .|.|.+..
T Consensus        87 ~YyCa~~~   94 (110)
T d1oaql_          87 IYFCALWY   94 (110)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEccc
Confidence            99999764

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.71  E-value=7.6e-05  Score=63.59  Aligned_cols=73  Identities=14%  Similarity=0.281  Sum_probs=54.2

Q ss_pred             eeecCceeeccCCeEEEEEEEecC------CCcEEEEEEC--CEec------------CCCCcEEEEEcCCEEEEEEccc
Q psy16863        353 IRRLHDIAVKVGTRARLLVEIRSP------TEIKIHWYRN--DRKL------------EENKIYRTQHDGNFYFIDLSSV  412 (1075)
Q Consensus       353 ~~~~~~~~v~~G~~v~l~C~~~g~------p~~~v~W~k~--g~~l------------~~~~~~~~~~~g~~~~L~I~~v  412 (1075)
                      ...|..+.+.+|++++|.|..++.      ....+.|||.  |..+            ....++....++....|.|.++
T Consensus         5 tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l   84 (113)
T d1q9ra1           5 SQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSV   84 (113)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC
T ss_pred             EccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEeccc
Confidence            345677889999999999987542      1235999983  3211            2234666777778889999999


Q ss_pred             CCCCceeEEEEEE
Q psy16863        413 SLFDSGRWTCLAE  425 (1075)
Q Consensus       413 ~~~d~G~Y~C~a~  425 (1075)
                      +.+|+|.|.|.+.
T Consensus        85 ~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          85 QAEDLAVYYCKQS   97 (113)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             ccCCCeEEEeccc
Confidence            9999999999764

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.71  E-value=7.2e-05  Score=61.37  Aligned_cols=65  Identities=17%  Similarity=0.244  Sum_probs=47.5

Q ss_pred             CCeEEEEEEEecCCCCeEEEEEC--CE---Ee--------ecCCcEEEEEe-eCcEEEEEEccccCCCCeEEEEEEEeC
Q psy16863        763 NEEFKFTVQVSISPEPKVSWFRD--DQ---QV--------VESDNVKILKE-TLGVCHLKIHALEVADQAEWKCIATND  827 (1075)
Q Consensus       763 g~~~~l~C~v~g~p~p~v~W~k~--g~---~i--------~~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~A~N~  827 (1075)
                      |++++|.|.........+.|||-  |+   -|        ....++..... ....+.|.|.+++++|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            78999999988777788999982  21   11        12234554432 334678999999999999999988754

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.70  E-value=0.00013  Score=61.95  Aligned_cols=74  Identities=11%  Similarity=0.225  Sum_probs=52.7

Q ss_pred             EeccceeeeecCCeEEEEEEEecCCCCeEEEEEC--CE-E--ee------------cCCcEEEEEeeCcEEEEEEccccC
Q psy16863        752 IEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQ-Q--VV------------ESDNVKILKETLGVCHLKIHALEV  814 (1075)
Q Consensus       752 ~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~-~--i~------------~~~~~~~~~~~~~~~~L~I~~~~~  814 (1075)
                      ...+....+.+|++++|.|..++ ....+.|||-  |+ +  |.            ...++.........+.|+|.++++
T Consensus         5 ~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   83 (110)
T d2aq2a1           5 TQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATP   83 (110)
T ss_dssp             EEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCG
T ss_pred             EEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCH
Confidence            34455667899999999999875 4568999982  22 1  10            112344444455678999999999


Q ss_pred             CCCeEEEEEEEe
Q psy16863        815 ADQAEWKCIATN  826 (1075)
Q Consensus       815 ~D~G~Y~C~A~N  826 (1075)
                      +|+|.|.|.+..
T Consensus        84 ~Dsa~YyCa~~~   95 (110)
T d2aq2a1          84 SQTSVYFCASGG   95 (110)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             hhCEEEEEeeCC
Confidence            999999998764

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=0.00013  Score=61.83  Aligned_cols=75  Identities=16%  Similarity=0.309  Sum_probs=50.2

Q ss_pred             cceEeecCCeEEEEEEEecCCC-CceEEEEeCCe--E---E---------ecCCcEEEEE-cCCceEEEEEeeeeecCCc
Q psy16863        558 ENVKAKIGTSAILECQVLVPPW-PRSIYWYNKEG--V---V---------EASDKYHIMA-DGLGGYSIEINYLEAVDDG  621 (1075)
Q Consensus       558 ~~~~v~~G~~~~L~C~~~~~p~-p~~v~W~~~~~--~---i---------~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G  621 (1075)
                      +.+.+.+|++++|.|..+.... ...+.||+...  .   +         ....++.+.. ...+.+.|+|.+++.+|+|
T Consensus         4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG   83 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSG   83 (108)
T ss_dssp             EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCE
Confidence            3466789999999998754322 22578987321  1   1         1123444433 3346789999999999999


Q ss_pred             eEEEEEECCCC
Q psy16863        622 EWKCVATSSSG  632 (1075)
Q Consensus       622 ~Y~C~a~n~~g  632 (1075)
                      .|.|.+.....
T Consensus        84 ~Y~C~v~~~~~   94 (108)
T d1hkfa_          84 HYWCRIYRPSD   94 (108)
T ss_dssp             EEEEEEECTTT
T ss_pred             EEEEEEecCCC
Confidence            99999875543

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.70  E-value=5.5e-05  Score=65.05  Aligned_cols=76  Identities=12%  Similarity=0.202  Sum_probs=52.9

Q ss_pred             eeecCceeeccCCeEEEEEEEec-CCCcEEEEEEC--CEec---------C----CCCcEEEE--EcCCEEEEEEcccCC
Q psy16863        353 IRRLHDIAVKVGTRARLLVEIRS-PTEIKIHWYRN--DRKL---------E----ENKIYRTQ--HDGNFYFIDLSSVSL  414 (1075)
Q Consensus       353 ~~~~~~~~v~~G~~v~l~C~~~g-~p~~~v~W~k~--g~~l---------~----~~~~~~~~--~~g~~~~L~I~~v~~  414 (1075)
                      ...+..+.+.+|++|+|.|.... .....+.|||.  |+.+         .    ...++.+.  ..++...|.|.++..
T Consensus         3 tQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1fo0a_           3 TQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQI   82 (115)
T ss_dssp             ECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCG
T ss_pred             EccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCc
Confidence            34556778999999999998753 33557899982  2111         0    01233333  345667899999999


Q ss_pred             CCceeEEEEEEeCC
Q psy16863        415 FDSGRWTCLAENAV  428 (1075)
Q Consensus       415 ~d~G~Y~C~a~n~~  428 (1075)
                      +|+|.|.|.+....
T Consensus        83 ~Dsa~YyCa~~~~~   96 (115)
T d1fo0a_          83 EDSAVYFCAMRGDY   96 (115)
T ss_dssp             GGCEEEEEEEECCC
T ss_pred             cccccccceeecCC
Confidence            99999999987543

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.70  E-value=3.9e-05  Score=65.79  Aligned_cols=73  Identities=19%  Similarity=0.293  Sum_probs=54.6

Q ss_pred             eecCceeeccCCeEEEEEEEecCCCcEEEEEEC--CE---ec---------CCCCcEEEEEcCCEEEEEEcccCCCCcee
Q psy16863        354 RRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DR---KL---------EENKIYRTQHDGNFYFIDLSSVSLFDSGR  419 (1075)
Q Consensus       354 ~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~---~l---------~~~~~~~~~~~g~~~~L~I~~v~~~d~G~  419 (1075)
                      ..|..+.+.+|++++|.|...+.....+.|||.  +.   .|         ....++.....+..+.|.|.++..+|+|.
T Consensus         6 Q~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsav   85 (119)
T d1f3rb2           6 QSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVAT   85 (119)
T ss_dssp             EETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSE
T ss_pred             ccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeE
Confidence            445677889999999999986554557999983  21   11         11345556667777889999999999999


Q ss_pred             EEEEEEe
Q psy16863        420 WTCLAEN  426 (1075)
Q Consensus       420 Y~C~a~n  426 (1075)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (119)
T d1f3rb2          86 YFCYQYN   92 (119)
T ss_dssp             EEEEEES
T ss_pred             EEeeccC
Confidence            9998654

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.70  E-value=5.1e-05  Score=64.43  Aligned_cols=74  Identities=16%  Similarity=0.251  Sum_probs=54.1

Q ss_pred             eeecCceeeccCCeEEEEEEEecC----CCcEEEEEEC--CEec------------CCCCcEEEEEcCCEEEEEEcccCC
Q psy16863        353 IRRLHDIAVKVGTRARLLVEIRSP----TEIKIHWYRN--DRKL------------EENKIYRTQHDGNFYFIDLSSVSL  414 (1075)
Q Consensus       353 ~~~~~~~~v~~G~~v~l~C~~~g~----p~~~v~W~k~--g~~l------------~~~~~~~~~~~g~~~~L~I~~v~~  414 (1075)
                      ...|..+.+.+|++|+|.|.....    ....+.|||.  |+.+            ....++....++....|.|.++..
T Consensus         5 tQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   84 (111)
T d1j05a_           5 TQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEA   84 (111)
T ss_dssp             EEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCG
T ss_pred             EccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEccccc
Confidence            345667788999999999987432    1335999983  3221            123456666777888999999999


Q ss_pred             CCceeEEEEEEe
Q psy16863        415 FDSGRWTCLAEN  426 (1075)
Q Consensus       415 ~d~G~Y~C~a~n  426 (1075)
                      +|+|.|.|.+.+
T Consensus        85 ~Dsa~YyCa~~~   96 (111)
T d1j05a_          85 DDVATYYCQQTN   96 (111)
T ss_dssp             GGCEEEEEEECS
T ss_pred             ccCccEEEeecC
Confidence            999999998653

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.70  E-value=9.5e-05  Score=62.32  Aligned_cols=72  Identities=19%  Similarity=0.223  Sum_probs=52.8

Q ss_pred             eccceeeeecCCeEEEEEEEecCCCCeEEEEEC--CE---Eee---------cCCcEEEEEeeCcEEEEEEccccCCCCe
Q psy16863        753 EGLKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQ---QVV---------ESDNVKILKETLGVCHLKIHALEVADQA  818 (1075)
Q Consensus       753 ~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~---~i~---------~~~~~~~~~~~~~~~~L~I~~~~~~D~G  818 (1075)
                      ..+..+.+.+|++++|.|..+......+.|||-  |+   .|.         ...++.... ....+.|.|.+++++|+|
T Consensus         6 QsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~-~~~~~~L~I~~~~~~DSa   84 (109)
T d1mqkl_           6 QTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSG-SGTQFSLKINSLLPEDFG   84 (109)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ETTEEEEEESSCCGGGCE
T ss_pred             CcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEec-cCCEEEEEEccccccCCe
Confidence            334566788999999999988666667999982  22   111         123455443 445789999999999999


Q ss_pred             EEEEEEE
Q psy16863        819 EWKCIAT  825 (1075)
Q Consensus       819 ~Y~C~A~  825 (1075)
                      .|-|.+.
T Consensus        85 ~YyCA~~   91 (109)
T d1mqkl_          85 SYYCQHH   91 (109)
T ss_dssp             EEEEEEC
T ss_pred             eEEEeee
Confidence            9999875

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.69  E-value=5.3e-05  Score=63.81  Aligned_cols=72  Identities=15%  Similarity=0.276  Sum_probs=53.8

Q ss_pred             cCceeeccCCeEEEEEEEecCCCcEEEEEEC--CEe---c---------CCCCcEEEEEcCCEEEEEEcccCCCCceeEE
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DRK---L---------EENKIYRTQHDGNFYFIDLSSVSLFDSGRWT  421 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~---l---------~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~  421 (1075)
                      |..+.+.+|++++|.|.........+.|||-  |+.   |         .-..++....++....|.|.+++.+|+|.|.
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~Yy   85 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEE
Confidence            4567788999999999885444456899982  321   1         1124677777778889999999999999999


Q ss_pred             EEEEeC
Q psy16863        422 CLAENA  427 (1075)
Q Consensus       422 C~a~n~  427 (1075)
                      |.+...
T Consensus        86 CA~~~~   91 (108)
T d1nfde1          86 CLSSYG   91 (108)
T ss_dssp             EEEEET
T ss_pred             EEeecC
Confidence            987643

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.69  E-value=5.3e-05  Score=65.12  Aligned_cols=75  Identities=15%  Similarity=0.262  Sum_probs=50.9

Q ss_pred             eeccceEeecCCeEEEEEEEecCCCCceEEEEeC-----CeEE------e-----------cCCcEEEEEc-CCceEEEE
Q psy16863        555 KEVENVKAKIGTSAILECQVLVPPWPRSIYWYNK-----EGVV------E-----------ASDKYHIMAD-GLGGYSIE  611 (1075)
Q Consensus       555 ~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~-----~~~i------~-----------~~~~~~~~~~-~~~~~~L~  611 (1075)
                      ..|....+.+|++++|.|.+.+......+.||+.     .+.+      .           ...++....+ ....+.|+
T Consensus         3 Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   82 (115)
T d2atpb1           3 QTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLS   82 (115)
T ss_dssp             EECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEE
T ss_pred             eeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEe
Confidence            3456778999999999999876443337999974     2211      0           1123333322 23356899


Q ss_pred             EeeeeecCCceEEEEEEC
Q psy16863        612 INYLEAVDDGEWKCVATS  629 (1075)
Q Consensus       612 i~~~~~~d~G~Y~C~a~n  629 (1075)
                      |.+++.+|+|.|.|.+..
T Consensus        83 I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          83 IMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             ECSCCGGGCEEEEEEEEC
T ss_pred             ecccCCCCCcEEEEeEcC
Confidence            999999999999998753

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.69  E-value=6.4e-05  Score=63.89  Aligned_cols=71  Identities=14%  Similarity=0.292  Sum_probs=53.1

Q ss_pred             eecCceeeccCCeEEEEEEEecC-----CCcEEEEEEC--CEec------------CCCCcEEEEEcCCEEEEEEcccCC
Q psy16863        354 RRLHDIAVKVGTRARLLVEIRSP-----TEIKIHWYRN--DRKL------------EENKIYRTQHDGNFYFIDLSSVSL  414 (1075)
Q Consensus       354 ~~~~~~~v~~G~~v~l~C~~~g~-----p~~~v~W~k~--g~~l------------~~~~~~~~~~~g~~~~L~I~~v~~  414 (1075)
                      ..+..+.+.+|++|+|.|..++.     ....+.||+.  |...            ....++.....++...|.|.++..
T Consensus         6 Q~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~   85 (112)
T d1mjul1           6 QAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEA   85 (112)
T ss_dssp             CCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCG
T ss_pred             ecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccc
Confidence            44567788999999999998653     2457899973  2211            113466677778888999999999


Q ss_pred             CCceeEEEEE
Q psy16863        415 FDSGRWTCLA  424 (1075)
Q Consensus       415 ~d~G~Y~C~a  424 (1075)
                      +|+|.|.|..
T Consensus        86 ~DsAvYyCa~   95 (112)
T d1mjul1          86 EDVGVYYCLQ   95 (112)
T ss_dssp             GGCEEEEEEE
T ss_pred             cCCceEEEEe
Confidence            9999999953

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.69  E-value=7.1e-05  Score=63.28  Aligned_cols=74  Identities=18%  Similarity=0.349  Sum_probs=51.4

Q ss_pred             eeccceEeecCCeEEEEEEEecCCCCceEEEEeCC--e---EEe---------cCCcEEEEEcCCceEEEEEeeeeecCC
Q psy16863        555 KEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKE--G---VVE---------ASDKYHIMADGLGGYSIEINYLEAVDD  620 (1075)
Q Consensus       555 ~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~--~---~i~---------~~~~~~~~~~~~~~~~L~i~~~~~~d~  620 (1075)
                      ..|..+.+.+|++++|.|..........+.||+..  +   .+.         ...++....++ ..+.|+|.+++.+|+
T Consensus         6 Q~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~-~~~~L~I~~~~~~Ds   84 (108)
T d2fx7l1           6 QSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSG-TDFTLTISRLEPEDF   84 (108)
T ss_dssp             CSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET-TEEEEEESSCCGGGC
T ss_pred             eeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCC-CEEEEEehHheeccc
Confidence            34566778999999999998654323368999742  1   111         12344444443 467899999999999


Q ss_pred             ceEEEEEEC
Q psy16863        621 GEWKCVATS  629 (1075)
Q Consensus       621 G~Y~C~a~n  629 (1075)
                      |.|.|.+.+
T Consensus        85 a~YyCa~~~   93 (108)
T d2fx7l1          85 AVYYCQQYG   93 (108)
T ss_dssp             SEEEEEECS
T ss_pred             EEEeeecCC
Confidence            999998754

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.68  E-value=0.00012  Score=62.08  Aligned_cols=74  Identities=12%  Similarity=0.231  Sum_probs=53.0

Q ss_pred             eeeecCceeeccCCeEEEEEEEecCCCcEEEEEEC--CEec----------------CCCCcEEEEEcCCEEEEEEcccC
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DRKL----------------EENKIYRTQHDGNFYFIDLSSVS  413 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~l----------------~~~~~~~~~~~g~~~~L~I~~v~  413 (1075)
                      +...|....+.+|++++|.|..++ ....+.|||-  |+.+                ...........+....|+|.++.
T Consensus         4 V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (110)
T d2aq2a1           4 VTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESAT   82 (110)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCC
T ss_pred             EEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCC
Confidence            445567788999999999999854 3568999982  2211                01122233445566789999999


Q ss_pred             CCCceeEEEEEEe
Q psy16863        414 LFDSGRWTCLAEN  426 (1075)
Q Consensus       414 ~~d~G~Y~C~a~n  426 (1075)
                      .+|+|.|.|.+..
T Consensus        83 ~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          83 PSQTSVYFCASGG   95 (110)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             HhhCEEEEEeeCC
Confidence            9999999998764

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.68  E-value=2e-05  Score=67.84  Aligned_cols=72  Identities=18%  Similarity=0.237  Sum_probs=49.9

Q ss_pred             ccceeeeecCCeEEEEEEEecC-CCCeEEEEEC-----CEEee-----------------cCCcEEEEEe-eCcEEEEEE
Q psy16863        754 GLKSCQATVNEEFKFTVQVSIS-PEPKVSWFRD-----DQQVV-----------------ESDNVKILKE-TLGVCHLKI  809 (1075)
Q Consensus       754 ~~~~~~~~~g~~~~l~C~v~g~-p~p~v~W~k~-----g~~i~-----------------~~~~~~~~~~-~~~~~~L~I  809 (1075)
                      .+....+.+|++++|.|.+.+. ....+.|||-     ++.+.                 ...++..... ....+.|+|
T Consensus         4 ~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   83 (115)
T d2atpb1           4 TPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSI   83 (115)
T ss_dssp             ECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEE
T ss_pred             eCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEee
Confidence            3455678999999999998864 4567999973     23220                 1123333332 223568999


Q ss_pred             ccccCCCCeEEEEEEE
Q psy16863        810 HALEVADQAEWKCIAT  825 (1075)
Q Consensus       810 ~~~~~~D~G~Y~C~A~  825 (1075)
                      .+++.+|+|.|.|.+.
T Consensus        84 ~~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          84 MNVKPEDSDFYFCATV   99 (115)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             cccCCCCCcEEEEeEc
Confidence            9999999999999775

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.67  E-value=6.1e-05  Score=64.20  Aligned_cols=71  Identities=17%  Similarity=0.229  Sum_probs=49.5

Q ss_pred             ceeeeecCCeEEEEEEEecCCCCeEEEEEC--CEE---ee---------cCCcEEEEE-eeCcEEEEEEccccCCCCeEE
Q psy16863        756 KSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQQ---VV---------ESDNVKILK-ETLGVCHLKIHALEVADQAEW  820 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~~---i~---------~~~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y  820 (1075)
                      ....+.+|++++|.|.........+.|||-  |+.   +.         ...++.... .....+.|.|.+++++|+|.|
T Consensus         7 ~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   86 (110)
T d1u3ha1           7 QSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATY   86 (110)
T ss_dssp             SSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSEE
T ss_pred             CEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCceeE
Confidence            445688999999999988655567999983  221   11         112222222 223467899999999999999


Q ss_pred             EEEEEe
Q psy16863        821 KCIATN  826 (1075)
Q Consensus       821 ~C~A~N  826 (1075)
                      .|.+.-
T Consensus        87 yCa~~~   92 (110)
T d1u3ha1          87 FCAASA   92 (110)
T ss_dssp             EECCEE
T ss_pred             eeeecC
Confidence            998863

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.66  E-value=0.00011  Score=61.66  Aligned_cols=72  Identities=19%  Similarity=0.284  Sum_probs=52.7

Q ss_pred             ccceeeeecCCeEEEEEEEecCCCCeEEEEEC--CE---Eee---------cCCcEEEEEeeCcEEEEEEccccCCCCeE
Q psy16863        754 GLKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQ---QVV---------ESDNVKILKETLGVCHLKIHALEVADQAE  819 (1075)
Q Consensus       754 ~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~---~i~---------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~  819 (1075)
                      .+....+.+|++++|.|..+......+.|||-  |.   .|.         ...++..... ...+.|.|.+++++|+|.
T Consensus         7 ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~-~~~~~L~I~~~~~~Dsa~   85 (107)
T d1d5il1           7 SPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGS-GQDYSLTISSLEYEDMGI   85 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-TTEEEEEESSCCGGGCEE
T ss_pred             eCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeeccc-CCEEEccccccCCcCCEE
Confidence            34556788999999999988777778999973  22   111         1235555433 456899999999999999


Q ss_pred             EEEEEEe
Q psy16863        820 WKCIATN  826 (1075)
Q Consensus       820 Y~C~A~N  826 (1075)
                      |.|.+.+
T Consensus        86 YyCa~~~   92 (107)
T d1d5il1          86 YYCLQYD   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEeeecc
Confidence            9997654

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=0.00027  Score=57.73  Aligned_cols=69  Identities=14%  Similarity=0.249  Sum_probs=48.6

Q ss_pred             ccCCeEEEEEEEec-CCCcEEEEEECCEecCCCCcEEEEE--cCCEE---EEEEcccCCCCceeEEEEEEeCCCceee
Q psy16863        362 KVGTRARLLVEIRS-PTEIKIHWYRNDRKLEENKIYRTQH--DGNFY---FIDLSSVSLFDSGRWTCLAENAVGRSHC  433 (1075)
Q Consensus       362 ~~G~~v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~~~~~~--~g~~~---~L~I~~v~~~d~G~Y~C~a~n~~g~~~~  433 (1075)
                      ..|+.++|.|.+.| .|.+.|+|++||+.+..........  +|...   .|.|   ...+...|+|.+.+..-....
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v---~~~~~~~~tC~V~h~~l~~~~   88 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDF---NMTTNHSFMCLIKYGHLRVNQ   88 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEE---ETTSCEEEEEEEEETTCCEEE
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEc---cCCccceEEEEEEecCCCCcE
Confidence            45788999999977 7888999999999887554333332  23332   4444   345667999999998655443

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=0.00018  Score=58.83  Aligned_cols=67  Identities=12%  Similarity=0.281  Sum_probs=46.7

Q ss_pred             ecCCeEEEEEEEec-CCCCeEEEEECCEEeecCCcEEEEEeeCcE----EEEEEccccCCCCeEEEEEEEeCCce
Q psy16863        761 TVNEEFKFTVQVSI-SPEPKVSWFRDDQQVVESDNVKILKETLGV----CHLKIHALEVADQAEWKCIATNDFGQ  830 (1075)
Q Consensus       761 ~~g~~~~l~C~v~g-~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~A~N~~G~  830 (1075)
                      ..++.++|.|.+.| .|.+.|+|++||+.+............++.    +.|.|.   ..+...|+|.+....-.
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~   85 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLR   85 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCC
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCC
Confidence            35778999999997 699999999999988654332222222232    345554   45678999999987544

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=0.00013  Score=59.13  Aligned_cols=70  Identities=11%  Similarity=0.172  Sum_probs=51.5

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEE
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLA  424 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a  424 (1075)
                      +|.+...+ ...|..|++|+|.|... .....+.|+|+|..-.    ......+....+.|.+++..|+|.|+|..
T Consensus         4 kPsLsa~P-~~~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~----~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~   73 (93)
T d1olla2           4 TPTLSVHP-GPEVISGEKVTFYCRLD-TATSMFLLLKEGRSSH----VQRGYGKVQAEFPLGPVTTAHRGTYRCFG   73 (93)
T ss_dssp             CCEEEEES-CSEEETTCEEEEEEECS-SSCSEEEEEEESSSCE----EEEEECSSEEEEEEEECCGGGCEEEEEEC
T ss_pred             CCEEEEeC-CCcccCCCcEEEEECCC-CCCCEEEEEECCCccc----eeecCCCceeEEEecccChhcCceEEEEe
Confidence            45554444 55788999999999873 4467999999885322    12223456667899999999999999974

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.62  E-value=9.4e-05  Score=62.07  Aligned_cols=73  Identities=15%  Similarity=0.171  Sum_probs=50.7

Q ss_pred             eecceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCC--C------------ceeccCcEEEEecCCeEEEEE
Q psy16863        140 RRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG--D------------HPIFGNRFRAINRDGRTELNI  205 (1075)
Q Consensus       140 ~~~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~--~------------~~~~~~~~~~~~~~~~~~L~I  205 (1075)
                      ..+..+.+.+|++++|.|..+....          ..+.|++..  .            .....+++.....+..+.|+|
T Consensus         5 Q~P~sl~~~~G~svtL~C~~~~~~~----------~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I   74 (106)
T d1op3k1           5 QSPSTLSASVGDTITITCRASQSIE----------TWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTI   74 (106)
T ss_dssp             EECSEEEECTTCEEEEEEEESSCCT----------TCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred             CcCCeEEECCCCCEEEEEEeCCCCC----------CcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEE
Confidence            4566788999999999998765321          123344321  1            111234676666677789999


Q ss_pred             ceeccCCCeEEEEEEEc
Q psy16863        206 RRVRRDDGGRYSVTASN  222 (1075)
Q Consensus       206 ~~~~~~D~G~Y~C~a~n  222 (1075)
                      .+++.+|+|.|.|.+..
T Consensus        75 ~~~~~~Dsa~YyCa~~~   91 (106)
T d1op3k1          75 SGLQFDDFATYHCQHYA   91 (106)
T ss_dssp             ESCCGGGCSEEEEEEEC
T ss_pred             ccccccCCCcEeeeeCC
Confidence            99999999999998754

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=8.3e-05  Score=63.57  Aligned_cols=84  Identities=17%  Similarity=0.208  Sum_probs=51.5

Q ss_pred             eeecceeEEeeCCeEEEEEEecCCC---eeEEEEcc--C-CCeeEEEeeCCCce-----eccCcEEEEecCCeEEEEEce
Q psy16863        139 IRRLHDIAVKVGTRARLLVEIRSPT---EIKCQFDL--N-NTIPFSFRAQGDHP-----IFGNRFRAINRDGRTELNIRR  207 (1075)
Q Consensus       139 ~~~~~~~~v~~G~~~~l~c~~~~~~---~~~c~~~~--~-~~~~~~W~~~~~~~-----~~~~~~~~~~~~~~~~L~I~~  207 (1075)
                      ...+.+.++.+|++++|.|.+....   .+.|....  . +.+.+.-+..+...     ....|+.....+....|+|.+
T Consensus         4 ~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~   83 (114)
T d1akjd_           4 RVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSD   83 (114)
T ss_dssp             EEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESS
T ss_pred             eECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEcc
Confidence            3445677888999999999886542   12222211  1 11111111111111     123467666667778999999


Q ss_pred             eccCCCeEEEEEEEc
Q psy16863        208 VRRDDGGRYSVTASN  222 (1075)
Q Consensus       208 ~~~~D~G~Y~C~a~n  222 (1075)
                      ++.+|+|.|.|.+..
T Consensus        84 l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          84 FRRENEGYYFCSALS   98 (114)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             CCCCCCEEEeEeEcC
Confidence            999999999999864

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.62  E-value=0.00011  Score=62.46  Aligned_cols=74  Identities=15%  Similarity=0.293  Sum_probs=54.8

Q ss_pred             eeeecCceeeccCCeEEEEEEEecC-----CCcEEEEEEC--CEec------------CCCCcEEEEEcCCEEEEEEccc
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIRSP-----TEIKIHWYRN--DRKL------------EENKIYRTQHDGNFYFIDLSSV  412 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~g~-----p~~~v~W~k~--g~~l------------~~~~~~~~~~~g~~~~L~I~~v  412 (1075)
                      +...|..+.+.+|++|+|.|..++.     ....+.||+-  |+..            ....++.....++...|+|.++
T Consensus         5 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~   84 (113)
T d1n4xl_           5 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV   84 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSC
T ss_pred             EeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCC
Confidence            3455677889999999999998542     2357999972  2211            1234666667788889999999


Q ss_pred             CCCCceeEEEEEE
Q psy16863        413 SLFDSGRWTCLAE  425 (1075)
Q Consensus       413 ~~~d~G~Y~C~a~  425 (1075)
                      ..+|+|.|.|...
T Consensus        85 ~~~DsavYyCa~~   97 (113)
T d1n4xl_          85 EAEDLGIYYCFQG   97 (113)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CcccCEEEEEEEC
Confidence            9999999999654

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.61  E-value=0.00013  Score=60.21  Aligned_cols=76  Identities=13%  Similarity=0.157  Sum_probs=52.6

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      +|.+... +...|..|++|+|.|.. ..+...+.|+|+|...... .......+....+.|..+...|+|.|+|.-...
T Consensus         6 kPsLsa~-P~~~V~~G~~VTL~C~~-~~~~~~f~L~k~g~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~   81 (99)
T d1nkra2           6 KPSLSAQ-PGPTVLAGENVTLSCSS-RSSYDMYHLSREGEAHERR-LPAGPKVNGTFQADFPLGPATHGGTYRCFGSFH   81 (99)
T ss_dssp             CCEEEEE-SCSEECTTCEEEEEEEE-SSCCSEEEEEETTCSSCEE-EECEEEETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred             CCEEEEe-CCCcccCCCeEEEEECC-CCCccEEEEEECCCccccE-EEccccCCccEEEEEeccccccCEEEEEEeecC
Confidence            5555444 45678999999999987 3457799999999643211 111223455556778888899999999986543

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.60  E-value=9.6e-05  Score=62.14  Aligned_cols=83  Identities=13%  Similarity=0.130  Sum_probs=50.5

Q ss_pred             eeecceeEEeeCCeEEEEEEecCCC--eeEEEEc--cCCCeeEEEeeCCCceeccCcEEEEecCCeEEEEEceeccCCCe
Q psy16863        139 IRRLHDIAVKVGTRARLLVEIRSPT--EIKCQFD--LNNTIPFSFRAQGDHPIFGNRFRAINRDGRTELNIRRVRRDDGG  214 (1075)
Q Consensus       139 ~~~~~~~~v~~G~~~~l~c~~~~~~--~~~c~~~--~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G  214 (1075)
                      ...+.++.+.+|++++|.|..+...  .+.|...  |..+..+.+...+.......++.....+..+.|+|.+++.+|+|
T Consensus         5 tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA   84 (107)
T d1tjgl1           5 TQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFA   84 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             EeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCc
Confidence            3456778899999999999887532  1222211  11111111111111111234666655667789999999999999


Q ss_pred             EEEEEEE
Q psy16863        215 RYSVTAS  221 (1075)
Q Consensus       215 ~Y~C~a~  221 (1075)
                      .|.|.+.
T Consensus        85 ~YyCa~~   91 (107)
T d1tjgl1          85 TYYCQQL   91 (107)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEEC
Confidence            9999654

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.60  E-value=0.00015  Score=62.14  Aligned_cols=78  Identities=15%  Similarity=0.321  Sum_probs=51.9

Q ss_pred             eeccceEeecCCeEEEEEEEecCCCCceEEEEeC--CeE---E----------ecCCcEEEEEcC-CceEEEEEeeeeec
Q psy16863        555 KEVENVKAKIGTSAILECQVLVPPWPRSIYWYNK--EGV---V----------EASDKYHIMADG-LGGYSIEINYLEAV  618 (1075)
Q Consensus       555 ~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~--~~~---i----------~~~~~~~~~~~~-~~~~~L~i~~~~~~  618 (1075)
                      ..+..+.+.+|++++|.|..........+.||+.  ++.   +          ....+.....++ ...+.|+|.+++.+
T Consensus         5 Q~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   84 (114)
T d2ak4d1           5 QAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVV   84 (114)
T ss_dssp             CCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             ecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccc
Confidence            3356677899999999998765433335889972  211   1          011223332222 34678999999999


Q ss_pred             CCceEEEEEECCCC
Q psy16863        619 DDGEWKCVATSSSG  632 (1075)
Q Consensus       619 d~G~Y~C~a~n~~g  632 (1075)
                      |+|.|.|.+....+
T Consensus        85 Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          85 DSAVYFCALSGFYN   98 (114)
T ss_dssp             GCEEEEEEEECSBT
T ss_pred             cCCCceEeCCCCCC
Confidence            99999998876543

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.60  E-value=8.8e-05  Score=63.30  Aligned_cols=74  Identities=14%  Similarity=0.224  Sum_probs=49.6

Q ss_pred             ccceeeeecCCeEEEEEEEecCCCCeEEEEEC--CE-Ee---ec------CCcE--EEEEeeCcEEEEEEccccCCCCeE
Q psy16863        754 GLKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQ-QV---VE------SDNV--KILKETLGVCHLKIHALEVADQAE  819 (1075)
Q Consensus       754 ~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~-~i---~~------~~~~--~~~~~~~~~~~L~I~~~~~~D~G~  819 (1075)
                      .+..+.+.+|++++|.|..+. ....+.|||-  |. +.   ..      ....  .........+.|.|.+++++|+|.
T Consensus         7 ~P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   85 (113)
T d1h5ba_           7 SPSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGT   85 (113)
T ss_dssp             ECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEE
T ss_pred             CCCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEE
Confidence            345567889999999999875 3457999982  22 11   00      0111  111122346789999999999999


Q ss_pred             EEEEEEeCC
Q psy16863        820 WKCIATNDF  828 (1075)
Q Consensus       820 Y~C~A~N~~  828 (1075)
                      |-|.+....
T Consensus        86 YyCa~~~~~   94 (113)
T d1h5ba_          86 YFCAAEASS   94 (113)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEecCCC
Confidence            999887543

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.60  E-value=0.00023  Score=58.32  Aligned_cols=71  Identities=14%  Similarity=0.265  Sum_probs=48.6

Q ss_pred             eeccCCeEEEEEEEec--CCCcEEEEEECCEecCCCC---cEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863        360 AVKVGTRARLLVEIRS--PTEIKIHWYRNDRKLEENK---IYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGR  430 (1075)
Q Consensus       360 ~v~~G~~v~l~C~~~g--~p~~~v~W~k~g~~l~~~~---~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~  430 (1075)
                      ....++.++|.|.+.|  .+...|+|++||+.+..+.   ......+|.........+..++...|+|.+.+....
T Consensus        13 ~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~V~H~sl~   88 (98)
T d1hdmb1          13 PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGAP   88 (98)
T ss_dssp             CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEEEECTTSS
T ss_pred             CccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEEEEeCCCC
Confidence            3556788999999988  3478999999999886442   122233555443333344566667999999997544

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.60  E-value=5.4e-05  Score=63.73  Aligned_cols=72  Identities=17%  Similarity=0.242  Sum_probs=51.9

Q ss_pred             eccceeeeecCCeEEEEEEEecCCCCeEEEEEC--CEEe---e---------cCCcEEEEEeeCcEEEEEEccccCCCCe
Q psy16863        753 EGLKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQQV---V---------ESDNVKILKETLGVCHLKIHALEVADQA  818 (1075)
Q Consensus       753 ~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~~i---~---------~~~~~~~~~~~~~~~~L~I~~~~~~D~G  818 (1075)
                      ..+..+.+.+|++++|.|..+......+.|||-  |+.+   .         ...++.... ....+.|.|.+++++|+|
T Consensus         6 QsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~-~~~~~~L~I~~~~~~Dsa   84 (107)
T d3cx5k1           6 QTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSG-SGTDYSLTISNLEPEDIA   84 (107)
T ss_dssp             EESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEE-ETTEEEEECSCCCSCCCS
T ss_pred             CcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEc-cCCEEEEEEeEeeecCCC
Confidence            344556788999999999988777778999973  2211   0         123444433 334789999999999999


Q ss_pred             EEEEEEE
Q psy16863        819 EWKCIAT  825 (1075)
Q Consensus       819 ~Y~C~A~  825 (1075)
                      .|-|.+.
T Consensus        85 ~YyCa~~   91 (107)
T d3cx5k1          85 TYFCQHH   91 (107)
T ss_dssp             EEEEEEC
T ss_pred             cEEeeeC
Confidence            9999764

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=8.3e-05  Score=60.85  Aligned_cols=74  Identities=14%  Similarity=0.076  Sum_probs=52.3

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      +|.+... +...|..|++|+|.|.........+.|+|+|...... .   ...+....+.|.+++.+|+|.|+|.-...
T Consensus         5 kP~Lsa~-P~~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~-~---~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2           5 KPFLSAD-RGLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ-H---QSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             CCEEEES-SCSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS-E---EECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CCEEEEe-CCCccCCCCeEEEEEeCCCCCceEEEEEECCcccceE-E---cCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            4544443 4557999999999998633345689999999633221 1   12334456889999999999999987643

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.59  E-value=3.8e-05  Score=66.03  Aligned_cols=74  Identities=15%  Similarity=0.201  Sum_probs=51.5

Q ss_pred             ccceeeeecCCeEEEEEEEecCCCCeEEEEEC--CE---Eee----------cCCcEEEEEe-eCcEEEEEEccccCCCC
Q psy16863        754 GLKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQ---QVV----------ESDNVKILKE-TLGVCHLKIHALEVADQ  817 (1075)
Q Consensus       754 ~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~---~i~----------~~~~~~~~~~-~~~~~~L~I~~~~~~D~  817 (1075)
                      .+..+.+.+|++++|+|..+......+.|||-  |+   .|.          ...++..... ......|+|.+++++|+
T Consensus         6 ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   85 (115)
T d1j8hd1           6 LGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDA   85 (115)
T ss_dssp             SCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGC
T ss_pred             CCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCC
Confidence            34456789999999999998766678999982  22   111          1122333222 22345799999999999


Q ss_pred             eEEEEEEEeC
Q psy16863        818 AEWKCIATND  827 (1075)
Q Consensus       818 G~Y~C~A~N~  827 (1075)
                      |.|.|.+...
T Consensus        86 a~YyCa~~~~   95 (115)
T d1j8hd1          86 AEYFCAVSES   95 (115)
T ss_dssp             EEEEEEEESS
T ss_pred             ccceeeecCC
Confidence            9999999754

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=1.6e-05  Score=67.28  Aligned_cols=70  Identities=16%  Similarity=0.313  Sum_probs=50.3

Q ss_pred             eeeecCCeEEEEEEEecCCC----CeEEEEECCEEeec------------CCcEEEEEeeCcEEEEEEccccCCCCeEEE
Q psy16863        758 CQATVNEEFKFTVQVSISPE----PKVSWFRDDQQVVE------------SDNVKILKETLGVCHLKIHALEVADQAEWK  821 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p~----p~v~W~k~g~~i~~------------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~  821 (1075)
                      +++..|++++|.|.......    ..+.|.+++..+..            ..+...  ...+..+|.|.+++.+|+|.|.
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~--~~~g~~sL~I~~v~~~D~G~Y~   81 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIF--DITNNLSIVILALRPSDEGTYE   81 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEE--ESTTTTEEEECSCCGGGCEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeee--ccCCcEEEEECcCChHHCeEEE
Confidence            56889999999998764221    36899998876521            123333  2334568999999999999999


Q ss_pred             EEEEeCCc
Q psy16863        822 CIATNDFG  829 (1075)
Q Consensus       822 C~A~N~~G  829 (1075)
                      |.+.+..+
T Consensus        82 C~V~~~~~   89 (105)
T d1dr9a1          82 CVVLKYEK   89 (105)
T ss_dssp             EEEEECCT
T ss_pred             EEEEeCCC
Confidence            99886543

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.58  E-value=0.00015  Score=60.70  Aligned_cols=72  Identities=13%  Similarity=0.126  Sum_probs=49.2

Q ss_pred             eeecceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCCC--c----------ee--ccCcEEEEecCCeEEEE
Q psy16863        139 IRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGD--H----------PI--FGNRFRAINRDGRTELN  204 (1075)
Q Consensus       139 ~~~~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~~--~----------~~--~~~~~~~~~~~~~~~L~  204 (1075)
                      ...+..+.+.+|++++|.|..+...           ..+.|++...  .          ..  ...++.....+..+.|.
T Consensus         4 tQsP~~l~~~~G~~vtl~C~~s~~~-----------~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~   72 (104)
T d1yqvl1           4 TQSPAIMSASPGEKVTMTCSASSSV-----------NYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLT   72 (104)
T ss_dssp             EEESSEEEECTTCCEEEEEEESSCC-----------SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEE
T ss_pred             eCcCCeEEECCCCCEEEEEEeCCCC-----------CccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEE
Confidence            3456677889999999999865432           1234554321  0          00  13456655566778999


Q ss_pred             EceeccCCCeEEEEEEE
Q psy16863        205 IRRVRRDDGGRYSVTAS  221 (1075)
Q Consensus       205 I~~~~~~D~G~Y~C~a~  221 (1075)
                      |.+++.+|+|.|.|.+.
T Consensus        73 I~~~~~~Dsa~YyCa~~   89 (104)
T d1yqvl1          73 ISSMETEDAATYYCQQW   89 (104)
T ss_dssp             ESSCCGGGCEEEEEEEC
T ss_pred             ecccCcccCCeEEEEec
Confidence            99999999999999764

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.57  E-value=0.00024  Score=58.37  Aligned_cols=70  Identities=16%  Similarity=0.303  Sum_probs=46.4

Q ss_pred             eccCCeEEEEEEEec--CCCcEEEEEECCEecCCCCc---EEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863        361 VKVGTRARLLVEIRS--PTEIKIHWYRNDRKLEENKI---YRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGR  430 (1075)
Q Consensus       361 v~~G~~v~l~C~~~g--~p~~~v~W~k~g~~l~~~~~---~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~  430 (1075)
                      ...++..+|.|.+.|  .+...|+|++||..+..+..   .....+|..+.+....+...+...|+|.+.+..-.
T Consensus        15 ~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~sl~   89 (98)
T d1d5mb1          15 QPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVT   89 (98)
T ss_dssp             ------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTTCS
T ss_pred             cccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECCCC
Confidence            344667789999987  33679999999998865421   12234566665555666777888999999997543

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.57  E-value=0.00012  Score=61.89  Aligned_cols=72  Identities=15%  Similarity=0.278  Sum_probs=53.0

Q ss_pred             eeecCceeeccCCeEEEEEEEecCC-----CcEEEEEEC--CEec------------CCCCcEEEEEcCCEEEEEEcccC
Q psy16863        353 IRRLHDIAVKVGTRARLLVEIRSPT-----EIKIHWYRN--DRKL------------EENKIYRTQHDGNFYFIDLSSVS  413 (1075)
Q Consensus       353 ~~~~~~~~v~~G~~v~l~C~~~g~p-----~~~v~W~k~--g~~l------------~~~~~~~~~~~g~~~~L~I~~v~  413 (1075)
                      ...|..+.+.+|++|+|.|..++..     ..-+.||+.  |..+            ....++.....++...|.|.++.
T Consensus         5 TQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~   84 (112)
T d1ncwl1           5 TQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVE   84 (112)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccc
Confidence            3456778899999999999975422     346999973  2211            11345666677788899999999


Q ss_pred             CCCceeEEEEE
Q psy16863        414 LFDSGRWTCLA  424 (1075)
Q Consensus       414 ~~d~G~Y~C~a  424 (1075)
                      .+|+|.|.|..
T Consensus        85 ~eDsAvYYC~~   95 (112)
T d1ncwl1          85 AEDLGVYYCWQ   95 (112)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cCcCEeEEEEc
Confidence            99999999954

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.55  E-value=0.00013  Score=62.71  Aligned_cols=75  Identities=12%  Similarity=0.184  Sum_probs=52.2

Q ss_pred             ccceeeeecCCeEEEEEEEec-CCCCeEEEEEC--CE-E---ee---------cCCcEEEEEe-eCcEEEEEEccccCCC
Q psy16863        754 GLKSCQATVNEEFKFTVQVSI-SPEPKVSWFRD--DQ-Q---VV---------ESDNVKILKE-TLGVCHLKIHALEVAD  816 (1075)
Q Consensus       754 ~~~~~~~~~g~~~~l~C~v~g-~p~p~v~W~k~--g~-~---i~---------~~~~~~~~~~-~~~~~~L~I~~~~~~D  816 (1075)
                      .+..+.+.+|++|+|.|..+. .....+.|||.  |+ +   +.         ...++.+... ..+.+.|.|.+++++|
T Consensus         5 ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   84 (115)
T d1fo0a_           5 TQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIED   84 (115)
T ss_dssp             CCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             cCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCccc
Confidence            345567899999999999764 34557899982  22 1   10         1134555443 3347889999999999


Q ss_pred             CeEEEEEEEeCC
Q psy16863        817 QAEWKCIATNDF  828 (1075)
Q Consensus       817 ~G~Y~C~A~N~~  828 (1075)
                      +|.|.|.+....
T Consensus        85 sa~YyCa~~~~~   96 (115)
T d1fo0a_          85 SAVYFCAMRGDY   96 (115)
T ss_dssp             CEEEEEEEECCC
T ss_pred             cccccceeecCC
Confidence            999999887543

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.55  E-value=0.00022  Score=58.82  Aligned_cols=80  Identities=18%  Similarity=0.214  Sum_probs=49.8

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecC-C-CcEEEEEECCEecCCCCc---EEEEEcCCEEEEEEcccCCCCceeEEEE
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSP-T-EIKIHWYRNDRKLEENKI---YRTQHDGNFYFIDLSSVSLFDSGRWTCL  423 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p-~~~v~W~k~g~~l~~~~~---~~~~~~g~~~~L~I~~v~~~d~G~Y~C~  423 (1075)
                      +|.+...+ ...+..|+.++|.|.+.|. | ...|+|++||+++..+..   .....+|.........+...+...|+|.
T Consensus         5 ~P~V~v~~-~~~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~   83 (101)
T d1fnga1           5 APEVTVLS-RSPVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDCE   83 (101)
T ss_dssp             CCEEEEEE-SSCCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECCCTTCCEEEE
T ss_pred             CCeEEEeC-CCcccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcCCCCCEEEEE
Confidence            55543322 2234567888999999883 4 679999999998865421   1122344443222333344566689999


Q ss_pred             EEeCCC
Q psy16863        424 AENAVG  429 (1075)
Q Consensus       424 a~n~~g  429 (1075)
                      +.+..-
T Consensus        84 V~H~sl   89 (101)
T d1fnga1          84 VDHWGL   89 (101)
T ss_dssp             EECTTC
T ss_pred             EEECCC
Confidence            998753

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00025  Score=57.58  Aligned_cols=67  Identities=16%  Similarity=0.235  Sum_probs=46.0

Q ss_pred             cCCeEEEEEEEec-CC-CcEEEEEECCEecCCC----CcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCC
Q psy16863        363 VGTRARLLVEIRS-PT-EIKIHWYRNDRKLEEN----KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG  429 (1075)
Q Consensus       363 ~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~----~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g  429 (1075)
                      .++.++|.|.+.| .| ...|+|++||+++...    .......++.........+...+...|+|.+.+..-
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~sl   86 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGL   86 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECTTS
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence            4667899999988 34 6799999999998543    122223344454444445556677799999999743

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.54  E-value=0.00012  Score=59.92  Aligned_cols=64  Identities=17%  Similarity=0.339  Sum_probs=46.5

Q ss_pred             CCeEEEEEEEecCCCcEEEEEEC--CEe---c---C-----CCCcEEEE--EcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        364 GTRARLLVEIRSPTEIKIHWYRN--DRK---L---E-----ENKIYRTQ--HDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       364 G~~v~l~C~~~g~p~~~v~W~k~--g~~---l---~-----~~~~~~~~--~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      |++|+|.|.........+.|||.  |..   |   .     ...++...  ..++...|.|.+++.+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            78999999987766778999982  211   1   1     12234333  3455678999999999999999998754

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.54  E-value=7.2e-05  Score=63.65  Aligned_cols=72  Identities=13%  Similarity=0.238  Sum_probs=51.7

Q ss_pred             ecCceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEec------------CCCCcEEEE--EcCCEEEEEEcccCCCC
Q psy16863        355 RLHDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRKL------------EENKIYRTQ--HDGNFYFIDLSSVSLFD  416 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~l------------~~~~~~~~~--~~g~~~~L~I~~v~~~d  416 (1075)
                      .|..+.+.+|++++|.|..++..  ..-+.|||.  ++.+            ....++...  ..++...|.|.++..+|
T Consensus         6 QP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~D   85 (111)
T d1cd0a_           6 QPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTED   85 (111)
T ss_dssp             CCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCccc
Confidence            34567899999999999986543  235899983  2221            112344443  34678899999999999


Q ss_pred             ceeEEEEEEe
Q psy16863        417 SGRWTCLAEN  426 (1075)
Q Consensus       417 ~G~Y~C~a~n  426 (1075)
                      +|.|.|.+.+
T Consensus        86 sa~YyCA~~~   95 (111)
T d1cd0a_          86 EADYYCQSYD   95 (111)
T ss_dssp             CEEEEEEEEE
T ss_pred             CcEEEEeecc
Confidence            9999998654

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.54  E-value=0.00013  Score=61.29  Aligned_cols=69  Identities=17%  Similarity=0.203  Sum_probs=48.1

Q ss_pred             ceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCC--Cc------------eeccCcEEEEecCCeEEEEEcee
Q psy16863        143 HDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG--DH------------PIFGNRFRAINRDGRTELNIRRV  208 (1075)
Q Consensus       143 ~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~--~~------------~~~~~~~~~~~~~~~~~L~I~~~  208 (1075)
                      ..+.+.+|++++|.|..+....          ..+.|++..  ..            .....++.....+..+.|+|.++
T Consensus         8 ~s~~~~~G~svtL~C~~s~~~~----------~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~   77 (106)
T d1lk3l1           8 PALTVSPGEKLTISCKASESVT----------SRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPV   77 (106)
T ss_dssp             SEEEECTTSCEEEEEEESSCCT----------TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             CeEEECCCCCEEEEEEeCCCCC----------ccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCc
Confidence            4678899999999998875321          123444321  11            11235677666677789999999


Q ss_pred             ccCCCeEEEEEEE
Q psy16863        209 RRDDGGRYSVTAS  221 (1075)
Q Consensus       209 ~~~D~G~Y~C~a~  221 (1075)
                      +.+|+|.|.|.+.
T Consensus        78 ~~~Dsa~YyCa~~   90 (106)
T d1lk3l1          78 EADDTAIYFCQQS   90 (106)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             ChhhCCCcccccc
Confidence            9999999999654

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.53  E-value=0.0001  Score=62.52  Aligned_cols=73  Identities=14%  Similarity=0.294  Sum_probs=48.0

Q ss_pred             cceEeecCCeEEEEEEEecCCCCceEEEEeC--CeE---Ee-------cCCcEEEE-EcCCceEEEEEeeeeecCCceEE
Q psy16863        558 ENVKAKIGTSAILECQVLVPPWPRSIYWYNK--EGV---VE-------ASDKYHIM-ADGLGGYSIEINYLEAVDDGEWK  624 (1075)
Q Consensus       558 ~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~--~~~---i~-------~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~  624 (1075)
                      ..+.+.+|++++|.|..+.......+.||+.  ++.   +.       ...+.... ......+.|.|.+++.+|+|.|.
T Consensus         6 ~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   85 (110)
T d2esvd1           6 PSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYY   85 (110)
T ss_dssp             SEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEE
T ss_pred             CEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEE
Confidence            4577899999999999765432335899973  221   10       11111221 12234678999999999999999


Q ss_pred             EEEECC
Q psy16863        625 CVATSS  630 (1075)
Q Consensus       625 C~a~n~  630 (1075)
                      |.+...
T Consensus        86 Ca~~~~   91 (110)
T d2esvd1          86 CIVVRS   91 (110)
T ss_dssp             EEEEES
T ss_pred             EEEeCC
Confidence            987643

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.52  E-value=8.2e-05  Score=63.41  Aligned_cols=71  Identities=17%  Similarity=0.221  Sum_probs=51.1

Q ss_pred             cCceeeccCCeEEEEEEEecCC-CcEEEEEEC--CEecC------------CCCcEEEEEcCCEEEEEEcccCCCCceeE
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPT-EIKIHWYRN--DRKLE------------ENKIYRTQHDGNFYFIDLSSVSLFDSGRW  420 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p-~~~v~W~k~--g~~l~------------~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y  420 (1075)
                      |..+.+.+|++|+|.|...+.. ...+.|||.  |+.+.            ...++.+..+.....|.|.++..+|+|.|
T Consensus         5 P~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Y   84 (112)
T d1kgcd1           5 PNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVY   84 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeE
Confidence            4557788999999999986533 345899983  32221            11234455566677899999999999999


Q ss_pred             EEEEEe
Q psy16863        421 TCLAEN  426 (1075)
Q Consensus       421 ~C~a~n  426 (1075)
                      .|.+..
T Consensus        85 yCa~~~   90 (112)
T d1kgcd1          85 YCILPL   90 (112)
T ss_dssp             EEECCC
T ss_pred             eeeEec
Confidence            998754

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.52  E-value=0.00033  Score=59.43  Aligned_cols=83  Identities=14%  Similarity=0.142  Sum_probs=53.5

Q ss_pred             cccccceeeccceeEEEEEecCCC--------ceEE-EEecCCCeeeEEecCCCccc-cCCCeEEEeeCCeEEEEEcccC
Q psy16863        247 RRLHDIAVKVGTRARLLVEIRSPT--------EIKC-QFDLNNTIPFSFRAQGDHPI-FGNRFRAINRDGRTELNIRRVR  316 (1075)
Q Consensus       247 ~~~~~~~v~~g~~~~l~c~~~~~~--------~~~c-~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~~~~~L~I~~~~  316 (1075)
                      ..|..+.+.+|++++|.|..++..        .+.| +...+..+.+..+....... ..+++....++....|+|.+++
T Consensus         6 Q~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~   85 (113)
T d1q9ra1           6 QSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQ   85 (113)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC
T ss_pred             ccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccc
Confidence            445677889999999999876431        1222 11122333333332222111 2556777777888899999999


Q ss_pred             CCCCEEEEEEEEe
Q psy16863        317 RDDGGRYSVTASN  329 (1075)
Q Consensus       317 ~~d~G~Y~C~a~n  329 (1075)
                      ++|+|.|.|.+.+
T Consensus        86 ~~Dsa~YyCA~~~   98 (113)
T d1q9ra1          86 AEDLAVYYCKQSY   98 (113)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             cCCCeEEEecccC
Confidence            9999999997643

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.00043  Score=51.51  Aligned_cols=58  Identities=12%  Similarity=0.219  Sum_probs=43.6

Q ss_pred             ecCCeEEEEEEEecCCCC--eEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        761 TVNEEFKFTVQVSISPEP--KVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       761 ~~g~~~~l~C~v~g~p~p--~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      ..|..+.|+|.+...+.+  --.|.|+|+.|.++..      ......+.|..  .+|+|+|.|+-.+
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~------~~~~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL------PGQKTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTC------CCSEEEEEECG--GGCCEEEEEEEES
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCC------CCCceEEEEec--CCCCceEEEEEcC
Confidence            467889999999875433  5789999999987642      12234677765  8899999999654

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.52  E-value=0.00029  Score=57.87  Aligned_cols=81  Identities=16%  Similarity=0.267  Sum_probs=51.4

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecC--CCcEEEEEECCEecCCCCc---EEEEEcCCEEEEEEcccCCCCceeEEE
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSP--TEIKIHWYRNDRKLEENKI---YRTQHDGNFYFIDLSSVSLFDSGRWTC  422 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~--p~~~v~W~k~g~~l~~~~~---~~~~~~g~~~~L~I~~v~~~d~G~Y~C  422 (1075)
                      .+|.+..-+. ..+..|+..+|.|.+.|.  +...|+|++||.++..+..   .....+|.........+..++...|+|
T Consensus         4 ~~P~V~v~~~-~~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC   82 (99)
T d1uvqa1           4 EVPEVTVFSK-SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDC   82 (99)
T ss_dssp             CCCEEEEEES-SCCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEEE
T ss_pred             cCCEEEEEcC-CcccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEEE
Confidence            4565543221 234567889999999883  4679999999998865321   122234554433333344566678999


Q ss_pred             EEEeCCC
Q psy16863        423 LAENAVG  429 (1075)
Q Consensus       423 ~a~n~~g  429 (1075)
                      ++.+..-
T Consensus        83 ~V~H~sl   89 (99)
T d1uvqa1          83 KVEHWGL   89 (99)
T ss_dssp             EEECTTS
T ss_pred             EEEeCCC
Confidence            9998743

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.52  E-value=0.00015  Score=61.24  Aligned_cols=84  Identities=10%  Similarity=0.093  Sum_probs=51.5

Q ss_pred             eeecceeEEeeCCeEEEEEEecCCCeeEEEEc---cCCCeeEEEeeCC-CceeccCcEEEEecCCeEEEEEceeccCCCe
Q psy16863        139 IRRLHDIAVKVGTRARLLVEIRSPTEIKCQFD---LNNTIPFSFRAQG-DHPIFGNRFRAINRDGRTELNIRRVRRDDGG  214 (1075)
Q Consensus       139 ~~~~~~~~v~~G~~~~l~c~~~~~~~~~c~~~---~~~~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G  214 (1075)
                      ...+..+.+.+|++++|.|..+....-...|.   ....+.+..+... .......++.....+..+.|+|.+++.+|+|
T Consensus         7 tQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa   86 (109)
T d1bwwa_           7 TQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIA   86 (109)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCc
Confidence            34566788999999999999876432111221   1111111111111 1111235676666667789999999999999


Q ss_pred             EEEEEEEc
Q psy16863        215 RYSVTASN  222 (1075)
Q Consensus       215 ~Y~C~a~n  222 (1075)
                      .|.|.+..
T Consensus        87 ~YyCA~~~   94 (109)
T d1bwwa_          87 TYYCQQYQ   94 (109)
T ss_dssp             EEEEEECS
T ss_pred             eEEEeecC
Confidence            99997643

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.52  E-value=0.00027  Score=60.70  Aligned_cols=76  Identities=17%  Similarity=0.395  Sum_probs=54.5

Q ss_pred             eeeecCceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEec------------CCCCcEEEEE--cCCEEEEEEcccC
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRKL------------EENKIYRTQH--DGNFYFIDLSSVS  413 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~l------------~~~~~~~~~~--~g~~~~L~I~~v~  413 (1075)
                      ++..+..+.+.+|++++|.|.+.+..  ...+.|||.  |+.+            ....++....  .++...|.|.++.
T Consensus         4 vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~   83 (120)
T d1hxma1           4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS   83 (120)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred             EeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccc
Confidence            34455677899999999999997643  457999982  2211            1123555443  4567899999999


Q ss_pred             CCCceeEEEEEEeC
Q psy16863        414 LFDSGRWTCLAENA  427 (1075)
Q Consensus       414 ~~d~G~Y~C~a~n~  427 (1075)
                      .+|+|.|.|.....
T Consensus        84 ~~Dsa~YyCA~~~~   97 (120)
T d1hxma1          84 ERDEGSYYCACDTL   97 (120)
T ss_dssp             GGGCEEEEEEEECC
T ss_pred             ccCCceeecCcccC
Confidence            99999999987553

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.51  E-value=0.00016  Score=61.31  Aligned_cols=71  Identities=17%  Similarity=0.217  Sum_probs=48.8

Q ss_pred             cceeeeecCCeEEEEEEEecCC----CCeEEEEEC--CEE---ee---------cCCcEEEEEeeCcEEEEEEccccCCC
Q psy16863        755 LKSCQATVNEEFKFTVQVSISP----EPKVSWFRD--DQQ---VV---------ESDNVKILKETLGVCHLKIHALEVAD  816 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p----~p~v~W~k~--g~~---i~---------~~~~~~~~~~~~~~~~L~I~~~~~~D  816 (1075)
                      +....+.+|++++|.|..+...    ...+.|||-  |+.   |.         ...++.... ....+.|.|.+++++|
T Consensus         8 P~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~-~~~~~~L~I~~~~~~D   86 (111)
T d1j05a_           8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG-SRTDFTLIIDPVEADD   86 (111)
T ss_dssp             CSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEC-SSSEEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEec-CCCEEEEEEccccccc
Confidence            4456688999999999875321    234999983  321   11         122444432 3457899999999999


Q ss_pred             CeEEEEEEEe
Q psy16863        817 QAEWKCIATN  826 (1075)
Q Consensus       817 ~G~Y~C~A~N  826 (1075)
                      +|.|-|.+.+
T Consensus        87 sa~YyCa~~~   96 (111)
T d1j05a_          87 VATYYCQQTN   96 (111)
T ss_dssp             CEEEEEEECS
T ss_pred             CccEEEeecC
Confidence            9999998754

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.51  E-value=0.00011  Score=62.22  Aligned_cols=75  Identities=11%  Similarity=0.209  Sum_probs=52.6

Q ss_pred             eeecCceeeccCCeEEEEEEEecCCCcEEEEEEC--CEec-------C-----CCCcEEEE--EcCCEEEEEEcccCCCC
Q psy16863        353 IRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DRKL-------E-----ENKIYRTQ--HDGNFYFIDLSSVSLFD  416 (1075)
Q Consensus       353 ~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~l-------~-----~~~~~~~~--~~g~~~~L~I~~v~~~d  416 (1075)
                      ...+..+.+.+|++++|.|.........+.|||-  |+.+       .     ...++...  ..+....|.|.++..+|
T Consensus         4 tQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~D   83 (110)
T d1ac6a_           4 TQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESD   83 (110)
T ss_dssp             EECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGG
T ss_pred             EeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCC
Confidence            4456677899999999999986655567999982  2211       0     11233332  23445679999999999


Q ss_pred             ceeEEEEEEeC
Q psy16863        417 SGRWTCLAENA  427 (1075)
Q Consensus       417 ~G~Y~C~a~n~  427 (1075)
                      +|.|.|.+...
T Consensus        84 sa~YyCA~~~~   94 (110)
T d1ac6a_          84 SAVYYCALSGG   94 (110)
T ss_dssp             CEEEEEEEEET
T ss_pred             CcccceeecCC
Confidence            99999988653

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.49  E-value=0.00028  Score=60.85  Aligned_cols=71  Identities=15%  Similarity=0.262  Sum_probs=51.5

Q ss_pred             cCceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEec--------------C---CCCcEEEEE--cCCEEEEEEccc
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRKL--------------E---ENKIYRTQH--DGNFYFIDLSSV  412 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~l--------------~---~~~~~~~~~--~g~~~~L~I~~v  412 (1075)
                      +..+.+.+|++++|.|.++|..  ...+.|||-  |+.+              .   ...++.+..  ..+...|.|.++
T Consensus         8 ~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l   87 (123)
T d1hxmb1           8 QISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNV   87 (123)
T ss_dssp             CSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSC
T ss_pred             CCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeeccccc
Confidence            3456778899999999998743  457899982  2111              0   124566654  346778999999


Q ss_pred             CCCCceeEEEEEEe
Q psy16863        413 SLFDSGRWTCLAEN  426 (1075)
Q Consensus       413 ~~~d~G~Y~C~a~n  426 (1075)
                      ..+|+|.|.|.+..
T Consensus        88 ~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          88 EKQDIATYYCALWE  101 (123)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ccccCcEEEEeeeC
Confidence            99999999998754

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.48  E-value=0.00022  Score=61.26  Aligned_cols=74  Identities=14%  Similarity=0.237  Sum_probs=52.9

Q ss_pred             eccceeeeecCCeEEEEEEEecCC--CCeEEEEEC--CEE---ee---------cCCcEEEEEe-eCcEEEEEEccccCC
Q psy16863        753 EGLKSCQATVNEEFKFTVQVSISP--EPKVSWFRD--DQQ---VV---------ESDNVKILKE-TLGVCHLKIHALEVA  815 (1075)
Q Consensus       753 ~~~~~~~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~---i~---------~~~~~~~~~~-~~~~~~L~I~~~~~~  815 (1075)
                      .....+.+.+|++++|+|.+++..  ...+.|||-  |+.   |.         ..+++....+ ....+.|.|.+++++
T Consensus         6 ~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~   85 (120)
T d1hxma1           6 PEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSER   85 (120)
T ss_dssp             ESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGG
T ss_pred             ccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccccc
Confidence            344556788999999999998654  457999982  221   11         1245665543 234789999999999


Q ss_pred             CCeEEEEEEEe
Q psy16863        816 DQAEWKCIATN  826 (1075)
Q Consensus       816 D~G~Y~C~A~N  826 (1075)
                      |+|.|.|....
T Consensus        86 Dsa~YyCA~~~   96 (120)
T d1hxma1          86 DEGSYYCACDT   96 (120)
T ss_dssp             GCEEEEEEEEC
T ss_pred             CCceeecCccc
Confidence            99999998654

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.48  E-value=0.00022  Score=60.31  Aligned_cols=74  Identities=14%  Similarity=0.226  Sum_probs=51.3

Q ss_pred             ccceeeeecCCeEEEEEEEecCCCCeEEEEEC--CEE---ee---------cCCcEEEEEee-CcEEEEEEccccCCCCe
Q psy16863        754 GLKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQQ---VV---------ESDNVKILKET-LGVCHLKIHALEVADQA  818 (1075)
Q Consensus       754 ~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~~---i~---------~~~~~~~~~~~-~~~~~L~I~~~~~~D~G  818 (1075)
                      .+..+.+.+|++++|.|.........+.|||-  |+.   |.         ...++...... ...+.|.|.+++++|+|
T Consensus         6 ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa   85 (110)
T d1ac6a_           6 TEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSA   85 (110)
T ss_dssp             CCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCE
T ss_pred             CCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCc
Confidence            34456789999999999987655567999982  221   11         12234433222 23568999999999999


Q ss_pred             EEEEEEEeC
Q psy16863        819 EWKCIATND  827 (1075)
Q Consensus       819 ~Y~C~A~N~  827 (1075)
                      .|-|.+...
T Consensus        86 ~YyCA~~~~   94 (110)
T d1ac6a_          86 VYYCALSGG   94 (110)
T ss_dssp             EEEEEEEET
T ss_pred             ccceeecCC
Confidence            999988754

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.48  E-value=0.00018  Score=61.41  Aligned_cols=71  Identities=14%  Similarity=0.201  Sum_probs=50.0

Q ss_pred             cceeeeecCCeEEEEEEEecCCCCeEEEEE--CCEEee---------------cCCcEEEEEeeCcEEEEEEccccCCCC
Q psy16863        755 LKSCQATVNEEFKFTVQVSISPEPKVSWFR--DDQQVV---------------ESDNVKILKETLGVCHLKIHALEVADQ  817 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k--~g~~i~---------------~~~~~~~~~~~~~~~~L~I~~~~~~D~  817 (1075)
                      +....+.+|++++|.|..++ ....+.|||  .|+...               ...++.........+.|+|.+++++|+
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   84 (113)
T d2ntsp1           6 PRYLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDS   84 (113)
T ss_dssp             CSEEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGC
T ss_pred             CCeEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccc
Confidence            34456889999999999764 345899998  232211               112344433344467899999999999


Q ss_pred             eEEEEEEEe
Q psy16863        818 AEWKCIATN  826 (1075)
Q Consensus       818 G~Y~C~A~N  826 (1075)
                      |.|-|.+..
T Consensus        85 a~YyCA~~~   93 (113)
T d2ntsp1          85 ALYLCASSL   93 (113)
T ss_dssp             EEEEEEEES
T ss_pred             eeeeeeeeC
Confidence            999998864

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.46  E-value=0.00018  Score=61.49  Aligned_cols=73  Identities=16%  Similarity=0.147  Sum_probs=49.0

Q ss_pred             eecceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCC--------------CceeccCcEEEEecCCeEEEEE
Q psy16863        140 RRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG--------------DHPIFGNRFRAINRDGRTELNI  205 (1075)
Q Consensus       140 ~~~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~--------------~~~~~~~~~~~~~~~~~~~L~I  205 (1075)
                      ..+..+.+.+|++++|.|..+....          ..+.|++..              .......++.....+..+.|.|
T Consensus         6 Q~P~sv~~~~G~svtl~C~~s~~~~----------~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I   75 (119)
T d1f3rb2           6 QSPSLLSASVGDRVTLSCKGSQNIN----------NYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTI   75 (119)
T ss_dssp             EETSEECCCTTCCEEEEEECSSCCB----------TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEE
T ss_pred             ccCCEEEECCCCCEEEEEEeCCCCc----------ceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEc
Confidence            4456677889999999998764321          123444321              1111234565555566689999


Q ss_pred             ceeccCCCeEEEEEEEc
Q psy16863        206 RRVRRDDGGRYSVTASN  222 (1075)
Q Consensus       206 ~~~~~~D~G~Y~C~a~n  222 (1075)
                      .+++.+|+|.|.|.+.+
T Consensus        76 ~~~~~~DsavYyCa~~~   92 (119)
T d1f3rb2          76 SSLQPEDVATYFCYQYN   92 (119)
T ss_dssp             CSCCGGGCSEEEEEEES
T ss_pred             ccCccCCCeEEEeeccC
Confidence            99999999999998764

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.00028  Score=57.15  Aligned_cols=71  Identities=8%  Similarity=0.190  Sum_probs=51.4

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEE
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIAT  825 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~  825 (1075)
                      +|.+...+. ..+..|++|+|.|... .+...+.|+|+|..-.    .. .........+.|.+++.+|+|.|+|...
T Consensus         4 kPsLsa~P~-~~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~----~~-~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2           4 TPTLSVHPG-PEVISGEKVTFYCRLD-TATSMFLLLKEGRSSH----VQ-RGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             CCEEEEESC-SEEETTCEEEEEEECS-SSCSEEEEEEESSSCE----EE-EEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CCEEEEeCC-CcccCCCcEEEEECCC-CCCCEEEEEECCCccc----ee-ecCCCceeEEEecccChhcCceEEEEeE
Confidence            555555443 4588999999999976 4567999999885321    11 1222346789999999999999999753

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=9e-05  Score=63.18  Aligned_cols=76  Identities=12%  Similarity=0.135  Sum_probs=43.0

Q ss_pred             eEEeeCCeEEEEEEecCCCe-----eEEEEccCCCeeEEEeeCCCce------eccCcEEEEecCCeEEEEEceeccCCC
Q psy16863        145 IAVKVGTRARLLVEIRSPTE-----IKCQFDLNNTIPFSFRAQGDHP------IFGNRFRAINRDGRTELNIRRVRRDDG  213 (1075)
Q Consensus       145 ~~v~~G~~~~l~c~~~~~~~-----~~c~~~~~~~~~~~W~~~~~~~------~~~~~~~~~~~~~~~~L~I~~~~~~D~  213 (1075)
                      +.+..|++++|.|..+.+..     +.+.|.......+..+..+...      ....|....  .+...|+|.+++.+|+
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~--~~~~sL~I~~v~~~D~   81 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFD--SDSWTLRLHNLQIKDK   81 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEE--TTTTEEEECSCCGGGC
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEecc--CCeEEEEECCCChhHC
Confidence            45567999999998865431     2233322221111111122111      112223222  3345899999999999


Q ss_pred             eEEEEEEEc
Q psy16863        214 GRYSVTASN  222 (1075)
Q Consensus       214 G~Y~C~a~n  222 (1075)
                      |.|.|.+..
T Consensus        82 G~Y~C~V~~   90 (110)
T d1ncna_          82 GLYQCIIHH   90 (110)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEe
Confidence            999999864

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.46  E-value=0.00023  Score=60.40  Aligned_cols=71  Identities=10%  Similarity=0.231  Sum_probs=48.9

Q ss_pred             cceeeeecCCeEEEEEEEecCCCCeEEEEEC--CEE---ee-------------cCCcEEEEEeeCcEEEEEEccccCCC
Q psy16863        755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQQ---VV-------------ESDNVKILKETLGVCHLKIHALEVAD  816 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~~---i~-------------~~~~~~~~~~~~~~~~L~I~~~~~~D  816 (1075)
                      +....+.+|++++|.|...+ ....+.|||-  |+.   |.             ...++.....+...+.|+|.+++.+|
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~D   84 (111)
T d2esve1           6 PSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELED   84 (111)
T ss_dssp             CSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCC
Confidence            44566889999999998654 3458999973  221   10             12334433333345789999999999


Q ss_pred             CeEEEEEEEe
Q psy16863        817 QAEWKCIATN  826 (1075)
Q Consensus       817 ~G~Y~C~A~N  826 (1075)
                      +|.|.|.+..
T Consensus        85 sa~YyCa~~~   94 (111)
T d2esve1          85 SGVYFCASSQ   94 (111)
T ss_dssp             CEEEEEEEES
T ss_pred             CceEEEeeeC
Confidence            9999998764

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.45  E-value=0.00041  Score=59.73  Aligned_cols=71  Identities=21%  Similarity=0.323  Sum_probs=51.4

Q ss_pred             ceeeeecCCeEEEEEEEecCC--CCeEEEEEC--CEE---e----------e----cCCcEEEEEee-CcEEEEEEcccc
Q psy16863        756 KSCQATVNEEFKFTVQVSISP--EPKVSWFRD--DQQ---V----------V----ESDNVKILKET-LGVCHLKIHALE  813 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~---i----------~----~~~~~~~~~~~-~~~~~L~I~~~~  813 (1075)
                      ..+...+|++++|+|.++|..  ...+.|||-  |+.   |          .    ...++.+..+. ...+.|.|.+++
T Consensus         9 ~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~   88 (123)
T d1hxmb1           9 ISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVE   88 (123)
T ss_dssp             SEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCC
T ss_pred             CeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccc
Confidence            345678899999999999753  457999982  211   1          0    12467766543 357889999999


Q ss_pred             CCCCeEEEEEEEe
Q psy16863        814 VADQAEWKCIATN  826 (1075)
Q Consensus       814 ~~D~G~Y~C~A~N  826 (1075)
                      ++|+|.|-|.+..
T Consensus        89 ~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          89 KQDIATYYCALWE  101 (123)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccCcEEEEeeeC
Confidence            9999999998753

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.45  E-value=0.00039  Score=58.87  Aligned_cols=81  Identities=10%  Similarity=0.107  Sum_probs=54.1

Q ss_pred             cccceeeccceeEEEEEecCCC----ceEEEE-ecCCCeeeEEecCC-CccccCCCeEEEeeCCeEEEEEcccCCCCCEE
Q psy16863        249 LHDIAVKVGTRARLLVEIRSPT----EIKCQF-DLNNTIPFSFRAQG-DHPIFGNRFRAINRDGRTELNIRRVRRDDGGR  322 (1075)
Q Consensus       249 ~~~~~v~~g~~~~l~c~~~~~~----~~~c~~-~~~~~~~~~w~~~~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~  322 (1075)
                      ++.+.+.+|++++|.|..+...    .+.|.- ..+....+..+... ......+++....++....|+|.+++++|+|.
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~   86 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcc
Confidence            4467899999999999876432    133321 12223333322222 22222567878788888999999999999999


Q ss_pred             EEEEEEe
Q psy16863        323 YSVTASN  329 (1075)
Q Consensus       323 Y~C~a~n  329 (1075)
                      |.|.+..
T Consensus        87 YyCA~~~   93 (111)
T d1rzfl1          87 YYCGTWD   93 (111)
T ss_dssp             EEEEEEE
T ss_pred             eEEeecC
Confidence            9998764

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00011  Score=60.51  Aligned_cols=80  Identities=13%  Similarity=0.147  Sum_probs=50.4

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecC-C-CCeEEEEECCEEeecCCcEEEEEeeCcEE-EEEEccccCCCCeEEEEE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSIS-P-EPKVSWFRDDQQVVESDNVKILKETLGVC-HLKIHALEVADQAEWKCI  823 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~-p-~p~v~W~k~g~~i~~~~~~~~~~~~~~~~-~L~I~~~~~~D~G~Y~C~  823 (1075)
                      .||....... ..+..|+.++|.|.+.|. | ...|+|+|||+++............++++ ......+..+|.+.|+|.
T Consensus         4 ~~P~V~v~~~-~~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~   82 (100)
T d1k5nb_           4 RTPKIQVYSR-HPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACR   82 (100)
T ss_dssp             BCCEEEEEES-SCCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEE
T ss_pred             CCCeeEEEcC-CcccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEE
Confidence            3565543221 124578899999999995 4 45899999999985432222233344432 222334456778899999


Q ss_pred             EEeC
Q psy16863        824 ATND  827 (1075)
Q Consensus       824 A~N~  827 (1075)
                      +.-.
T Consensus        83 V~H~   86 (100)
T d1k5nb_          83 VNHV   86 (100)
T ss_dssp             EECT
T ss_pred             EEeC
Confidence            9764

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.43  E-value=0.00022  Score=60.76  Aligned_cols=73  Identities=18%  Similarity=0.234  Sum_probs=50.6

Q ss_pred             eecCceeeccCCeEEEEEEEecCCCcEEEEEE--CCEec---------------CCCCcEEE-EEcCCEEEEEEcccCCC
Q psy16863        354 RRLHDIAVKVGTRARLLVEIRSPTEIKIHWYR--NDRKL---------------EENKIYRT-QHDGNFYFIDLSSVSLF  415 (1075)
Q Consensus       354 ~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k--~g~~l---------------~~~~~~~~-~~~g~~~~L~I~~v~~~  415 (1075)
                      ..|..+.+.+|++++|.|...+. ...+.|||  .|+.+               ....++.. ..++....|+|.++..+
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (113)
T d2ntsp1           4 QTPRYLIKTRGQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELG   82 (113)
T ss_dssp             EECSEEEEETTCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGG
T ss_pred             eCCCeEEECCCCCEEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcc
Confidence            34556788999999999997543 46899998  33221               01122322 23344568999999999


Q ss_pred             CceeEEEEEEeC
Q psy16863        416 DSGRWTCLAENA  427 (1075)
Q Consensus       416 d~G~Y~C~a~n~  427 (1075)
                      |+|.|.|.+...
T Consensus        83 Dsa~YyCA~~~~   94 (113)
T d2ntsp1          83 DSALYLCASSLA   94 (113)
T ss_dssp             GCEEEEEEEESS
T ss_pred             cceeeeeeeeCC
Confidence            999999988653

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00011  Score=63.82  Aligned_cols=72  Identities=13%  Similarity=0.293  Sum_probs=49.6

Q ss_pred             cCceeeccCCeEEEEEEEecC-------CCcEEEEEECCEec--------CC---------CCcEEEEE--cCCEEEEEE
Q psy16863        356 LHDIAVKVGTRARLLVEIRSP-------TEIKIHWYRNDRKL--------EE---------NKIYRTQH--DGNFYFIDL  409 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~-------p~~~v~W~k~g~~l--------~~---------~~~~~~~~--~g~~~~L~I  409 (1075)
                      +..+.+.+|+.|+|.|.++..       ....+.|++.+..-        ..         ..|+.+..  ..+...|+|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            456789999999999998521       12478899864211        00         12444433  223457999


Q ss_pred             cccCCCCceeEEEEEEeC
Q psy16863        410 SSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       410 ~~v~~~d~G~Y~C~a~n~  427 (1075)
                      .+++.+|+|.|.|.+...
T Consensus        88 ~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          88 RDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             CSCCGGGCEEEEEEEEET
T ss_pred             CCCChHHCEEEEEEEEeC
Confidence            999999999999999754

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00021  Score=59.68  Aligned_cols=72  Identities=14%  Similarity=0.324  Sum_probs=47.4

Q ss_pred             eeccCCeEEEEEEEec-CC-CcEEEEEECCEecCCCCcE----EEEEcCCEE---EEEEcccCCCCceeEEEEEEeCCCc
Q psy16863        360 AVKVGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKIY----RTQHDGNFY---FIDLSSVSLFDSGRWTCLAENAVGR  430 (1075)
Q Consensus       360 ~v~~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~~----~~~~~g~~~---~L~I~~v~~~d~G~Y~C~a~n~~g~  430 (1075)
                      ....++.++|.|.+.+ .| ...|+|++||..+......    ....+|...   .|.|..-.-.....|+|.+.+....
T Consensus        15 ~~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~   94 (105)
T d1fp5a2          15 WPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS   94 (105)
T ss_dssp             CSSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTST
T ss_pred             HHhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCCC
Confidence            3445678999999977 44 6799999999988654211    112334432   5666544434456899999997654


Q ss_pred             e
Q psy16863        431 S  431 (1075)
Q Consensus       431 ~  431 (1075)
                      .
T Consensus        95 ~   95 (105)
T d1fp5a2          95 P   95 (105)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.43  E-value=0.00012  Score=60.19  Aligned_cols=80  Identities=16%  Similarity=0.205  Sum_probs=49.5

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecC-C-CCeEEEEECCEEeecCCcE-EEEEeeCcEEE-EEEccccCCCCeEEEE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSIS-P-EPKVSWFRDDQQVVESDNV-KILKETLGVCH-LKIHALEVADQAEWKC  822 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~-p-~p~v~W~k~g~~i~~~~~~-~~~~~~~~~~~-L~I~~~~~~D~G~Y~C  822 (1075)
                      .||.+...+.. .+..|+.++|.|.+.|. | ...|+|+|||+++..+... ....+.++.+. .....+..++.+.|+|
T Consensus         2 ~pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC   80 (100)
T d1muja1           2 EAPQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDC   80 (100)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEE
T ss_pred             CCCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEE
Confidence            46665543322 35578899999999985 4 5799999999888643111 11222333222 2222344567889999


Q ss_pred             EEEeC
Q psy16863        823 IATND  827 (1075)
Q Consensus       823 ~A~N~  827 (1075)
                      .+...
T Consensus        81 ~V~H~   85 (100)
T d1muja1          81 KVEHW   85 (100)
T ss_dssp             EEECT
T ss_pred             EEEEC
Confidence            99865

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.42  E-value=0.00019  Score=60.95  Aligned_cols=72  Identities=15%  Similarity=0.292  Sum_probs=51.6

Q ss_pred             ceeeeecCCeEEEEEEEecCC--CCeEEEEEC--CEEee------------cCCcEEEEEe-eCcEEEEEEccccCCCCe
Q psy16863        756 KSCQATVNEEFKFTVQVSISP--EPKVSWFRD--DQQVV------------ESDNVKILKE-TLGVCHLKIHALEVADQA  818 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~i~------------~~~~~~~~~~-~~~~~~L~I~~~~~~D~G  818 (1075)
                      ..+.+.+|++++|.|..++..  ..-+.|||-  ++.+.            ..+++....+ ....+.|.|.+++++|+|
T Consensus         8 ~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa   87 (111)
T d1cd0a_           8 HSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEA   87 (111)
T ss_dssp             SEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             CeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccCc
Confidence            346688999999999988653  235999983  22211            1245555544 345789999999999999


Q ss_pred             EEEEEEEeC
Q psy16863        819 EWKCIATND  827 (1075)
Q Consensus       819 ~Y~C~A~N~  827 (1075)
                      .|.|.+.+.
T Consensus        88 ~YyCA~~~~   96 (111)
T d1cd0a_          88 DYYCQSYDA   96 (111)
T ss_dssp             EEEEEEEET
T ss_pred             EEEEeeccC
Confidence            999987653

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.42  E-value=0.00026  Score=60.26  Aligned_cols=77  Identities=21%  Similarity=0.359  Sum_probs=50.8

Q ss_pred             eeeccceEeecCCeEEEEEEEecCCCCceEEEEeC--CeEE----e-------cCC-cEEEEEcCCceEEEEEeeeeecC
Q psy16863        554 IKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNK--EGVV----E-------ASD-KYHIMADGLGGYSIEINYLEAVD  619 (1075)
Q Consensus       554 ~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~--~~~i----~-------~~~-~~~~~~~~~~~~~L~i~~~~~~d  619 (1075)
                      ...|..+.+.+|++++|.|..+... . .+.||+.  ++.+    .       ... +............|+|.+++.+|
T Consensus         5 ~Q~P~~~~v~~G~~vtl~C~~~~~~-~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (113)
T d1h5ba_           5 EQSPSALSLHEGTDSALRCNFTTTM-R-SVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLED   82 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEEESSCC-S-EEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGG
T ss_pred             EECCCEEEEcCCCCEEEEEEEecCC-c-cceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhH
Confidence            3446677889999999999987543 3 6999982  2111    0       011 11111122345689999999999


Q ss_pred             CceEEEEEECCCC
Q psy16863        620 DGEWKCVATSSSG  632 (1075)
Q Consensus       620 ~G~Y~C~a~n~~g  632 (1075)
                      +|.|.|.+....+
T Consensus        83 sa~YyCa~~~~~~   95 (113)
T d1h5ba_          83 SGTYFCAAEASSG   95 (113)
T ss_dssp             CEEEEEEEECSSS
T ss_pred             CEEEEEEecCCCC
Confidence            9999999875443

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=9.6e-05  Score=64.28  Aligned_cols=79  Identities=18%  Similarity=0.289  Sum_probs=48.6

Q ss_pred             cceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCCCc---------------e--eccCcEEEEe--cCCeEE
Q psy16863        142 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQGDH---------------P--IFGNRFRAIN--RDGRTE  202 (1075)
Q Consensus       142 ~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~~~---------------~--~~~~~~~~~~--~~~~~~  202 (1075)
                      +.++++.+|+.++|.|..+.+....   .......+.|++....               .  ...+|+.+..  ..+...
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~---~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s   84 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQ---TDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCT   84 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CT---TTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCC
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCC---cccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEE
Confidence            3567899999999999886432100   0011233455544211               0  1124565543  234678


Q ss_pred             EEEceeccCCCeEEEEEEEcC
Q psy16863        203 LNIRRVRRDDGGRYSVTASNE  223 (1075)
Q Consensus       203 L~I~~~~~~D~G~Y~C~a~n~  223 (1075)
                      |+|.+++.+|+|.|.|.+...
T Consensus        85 L~I~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          85 LSIRDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             EEECSCCGGGCEEEEEEEEET
T ss_pred             EEECCCChHHCEEEEEEEEeC
Confidence            999999999999999999654

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00041  Score=56.57  Aligned_cols=68  Identities=18%  Similarity=0.282  Sum_probs=47.6

Q ss_pred             cCCeEEEEEEEec-CC-CcEEEEEECCEecCCCCcEEEEE--cCCEEEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863        363 VGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKIYRTQH--DGNFYFIDLSSVSLFDSGRWTCLAENAVGR  430 (1075)
Q Consensus       363 ~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~~~~~~--~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~  430 (1075)
                      .|+.++|.|.+.| .| ...|+|++||..+..........  ++.........+...+...|+|.+.+..-.
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~sl~   85 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSSLA   85 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEETTCS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEECCCC
Confidence            4788999999988 44 57999999999886544333332  333444444445566777999999997544

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00016  Score=59.08  Aligned_cols=70  Identities=21%  Similarity=0.366  Sum_probs=54.6

Q ss_pred             CCCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEecc-----CCCEEEEEeCCCCCCCcEEEEEEEEe
Q psy16863        445 YKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK-----AGDIFALTANPKDPSSLGTYTCEAVN  514 (1075)
Q Consensus       445 ~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~-----~~~~~~l~i~~~~~~d~G~Y~C~a~n  514 (1075)
                      +.+|.+...+...+..|++|+|.|.........+.|+|+|....     ......+.+..+...|+|.|+|....
T Consensus         3 ~PkP~Lsa~P~~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   77 (96)
T d1ucta2           3 YGKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWY   77 (96)
T ss_dssp             SCCCEEEESSCSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEEC
T ss_pred             CCCCEEEEeCCCccCCCCeEEEEEeCCCCCceEEEEEECCcccceEEcCCCcccEEEEeccccccCcEEEEEEEc
Confidence            34678888888889999999999986433445899999997432     23446788999999999999998764

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.41  E-value=0.00036  Score=56.25  Aligned_cols=67  Identities=21%  Similarity=0.184  Sum_probs=44.3

Q ss_pred             CCeEEEEEEEec-CC-CcEEEEEECCEecCCCCcEEE-EEcCCEEEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863        364 GTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKIYRT-QHDGNFYFIDLSSVSLFDSGRWTCLAENAVGR  430 (1075)
Q Consensus       364 G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~~~~-~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~  430 (1075)
                      +..++|.|.+.| .| ...|+|++||..+........ ..+|.........+..++...|+|++.+..-.
T Consensus        15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v~~~~~~~ytC~V~H~sL~   84 (91)
T d3frua1          15 SGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEVKRGDEHHYQCQVEHEGLA   84 (91)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEEETTCGGGEEEEEECTTSS
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEECCCCCCEEEEEEEeCCCC
Confidence            458999999988 34 679999999998865432212 23444433223333456667999999987544

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.40  E-value=0.00042  Score=59.41  Aligned_cols=71  Identities=13%  Similarity=0.175  Sum_probs=49.2

Q ss_pred             cCceeeccCCeEEEEEEEecCC---CcEEEEEEC--CEec---------------CCCCcEEEEEcCCEEEEEEcccCCC
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPT---EIKIHWYRN--DRKL---------------EENKIYRTQHDGNFYFIDLSSVSLF  415 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p---~~~v~W~k~--g~~l---------------~~~~~~~~~~~g~~~~L~I~~v~~~  415 (1075)
                      |..+.+.+|++++|.|+..+..   ...+.|||.  |+.+               .+........++....|.|.+++.+
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV   85 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence            3456778999999999985432   225889983  2211               1111223445566778999999999


Q ss_pred             CceeEEEEEEe
Q psy16863        416 DSGRWTCLAEN  426 (1075)
Q Consensus       416 d~G~Y~C~a~n  426 (1075)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (117)
T d1dqta_          86 DTGLYLCKVEL   96 (117)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCEeEEEEEec
Confidence            99999998753

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.39  E-value=0.00041  Score=59.51  Aligned_cols=70  Identities=19%  Similarity=0.130  Sum_probs=47.1

Q ss_pred             eeeeecCCeEEEEEEEecCCCC---eEEEEEC--CEEee--------------cCCcEEEEEeeCcEEEEEEccccCCCC
Q psy16863        757 SCQATVNEEFKFTVQVSISPEP---KVSWFRD--DQQVV--------------ESDNVKILKETLGVCHLKIHALEVADQ  817 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~g~p~p---~v~W~k~--g~~i~--------------~~~~~~~~~~~~~~~~L~I~~~~~~D~  817 (1075)
                      ...+..|++++|.|.....-.+   .+.|||.  |+...              .+..+.....+.....|.|.+++.+|+
T Consensus         8 ~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   87 (117)
T d1dqta_           8 VVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDT   87 (117)
T ss_dssp             EEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             EEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccC
Confidence            3457789999999998643322   4789983  32110              111222223345578999999999999


Q ss_pred             eEEEEEEEe
Q psy16863        818 AEWKCIATN  826 (1075)
Q Consensus       818 G~Y~C~A~N  826 (1075)
                      |.|.|.+..
T Consensus        88 a~YyCa~~~   96 (117)
T d1dqta_          88 GLYLCKVEL   96 (117)
T ss_dssp             EEEEEEEEE
T ss_pred             EeEEEEEec
Confidence            999998753

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.38  E-value=0.00037  Score=59.72  Aligned_cols=72  Identities=18%  Similarity=0.301  Sum_probs=50.0

Q ss_pred             ecCceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEe---c----C---------CCCcEEEEE--cCCEEEEEEccc
Q psy16863        355 RLHDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRK---L----E---------ENKIYRTQH--DGNFYFIDLSSV  412 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~---l----~---------~~~~~~~~~--~g~~~~L~I~~v  412 (1075)
                      ++..+...+|++++|.|.+.+..  ...+.|||-  |+.   |    .         ...++.+..  ..+...|+|.++
T Consensus         7 ~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l   86 (120)
T d1ypzf1           7 PEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSL   86 (120)
T ss_dssp             SCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSC
T ss_pred             CCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccccc
Confidence            34456777899999999986532  356899982  211   1    0         113444443  345678999999


Q ss_pred             CCCCceeEEEEEEe
Q psy16863        413 SLFDSGRWTCLAEN  426 (1075)
Q Consensus       413 ~~~d~G~Y~C~a~n  426 (1075)
                      ..+|+|.|.|.+..
T Consensus        87 ~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          87 EEEDEAIYYCSYGE  100 (120)
T ss_dssp             CGGGCSEEEEEECC
T ss_pred             ccccceeEEEEEcC
Confidence            99999999997753

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.38  E-value=0.00021  Score=60.85  Aligned_cols=70  Identities=17%  Similarity=0.235  Sum_probs=48.8

Q ss_pred             cceeeeecCCeEEEEEEEecCCCCeEEEEEC--CE---Eee-------------cCCcEEEEEeeCcEEEEEEccccCCC
Q psy16863        755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQ---QVV-------------ESDNVKILKETLGVCHLKIHALEVAD  816 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~---~i~-------------~~~~~~~~~~~~~~~~L~I~~~~~~D  816 (1075)
                      +....+.+|++++|.|...+ ....+.|||-  |+   .+.             ...++.........+.|+|.+++++|
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   84 (112)
T d1kgce1           6 PRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQED   84 (112)
T ss_dssp             CSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGG
T ss_pred             CCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCC
Confidence            34456889999999998653 4568999982  21   110             12344443333346789999999999


Q ss_pred             CeEEEEEEE
Q psy16863        817 QAEWKCIAT  825 (1075)
Q Consensus       817 ~G~Y~C~A~  825 (1075)
                      +|.|.|.+.
T Consensus        85 sa~YyCa~~   93 (112)
T d1kgce1          85 SAVYLCASS   93 (112)
T ss_dssp             CEEEEEEEE
T ss_pred             CEEEEEeee
Confidence            999999875

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=0.00027  Score=58.78  Aligned_cols=82  Identities=10%  Similarity=0.195  Sum_probs=49.4

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEecC-C-CcEEEEEECCEecCCCCc---EEEEEcCCEE---EEEEcccCCCCcee
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRSP-T-EIKIHWYRNDRKLEENKI---YRTQHDGNFY---FIDLSSVSLFDSGR  419 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p-~~~v~W~k~g~~l~~~~~---~~~~~~g~~~---~L~I~~v~~~d~G~  419 (1075)
                      .+|.+...++......+..++|.|.+.|. | ...|+|++||.++..+..   .....+|...   .|.|..-.-.....
T Consensus         4 ~~P~V~l~~ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~   83 (102)
T d1q0xl2           4 SSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSS   83 (102)
T ss_dssp             BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCE
T ss_pred             CCCEEEEECCCHHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCE
Confidence            35554332222222345678999999773 3 579999999998764321   1112344433   45554433344569


Q ss_pred             EEEEEEeCCC
Q psy16863        420 WTCLAENAVG  429 (1075)
Q Consensus       420 Y~C~a~n~~g  429 (1075)
                      |+|.+.+...
T Consensus        84 ytC~V~H~~~   93 (102)
T d1q0xl2          84 YSCQVTHEGH   93 (102)
T ss_dssp             EEEEEEETTE
T ss_pred             EEEEEEECCc
Confidence            9999998754

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.37  E-value=0.0004  Score=59.10  Aligned_cols=75  Identities=15%  Similarity=0.222  Sum_probs=50.5

Q ss_pred             eeeecCceeeccCCeEEEEEEEecCCCcEEEEEEC--CEec------C---------CCCcEEEE-EcCCEEEEEEcccC
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DRKL------E---------ENKIYRTQ-HDGNFYFIDLSSVS  413 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~l------~---------~~~~~~~~-~~g~~~~L~I~~v~  413 (1075)
                      +...|..+.+.+|++++|.|.... ....+.|||-  |..+      .         ...++... .++....|+|.++.
T Consensus         3 V~QsP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   81 (113)
T d1j8he1           3 VTQSSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAS   81 (113)
T ss_dssp             EEESCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCC
T ss_pred             EEccCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCc
Confidence            344456678889999999998743 3567899982  2111      0         01222222 23445679999999


Q ss_pred             CCCceeEEEEEEeC
Q psy16863        414 LFDSGRWTCLAENA  427 (1075)
Q Consensus       414 ~~d~G~Y~C~a~n~  427 (1075)
                      .+|+|.|.|.+...
T Consensus        82 ~~Dsa~YyCa~~~~   95 (113)
T d1j8he1          82 TNQTSMYLCASSST   95 (113)
T ss_dssp             GGGCEEEEEEEECT
T ss_pred             cCCcccEEeeEccC
Confidence            99999999998753

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.36  E-value=0.0013  Score=49.25  Aligned_cols=73  Identities=18%  Similarity=0.311  Sum_probs=51.6

Q ss_pred             eeeeecCCeEEEEEEEec-CCCCeEEEEE-CCE---EeecCCcEEEEEee---CcEEEEEEccccCCCCeEEEEEEEeCC
Q psy16863        757 SCQATVNEEFKFTVQVSI-SPEPKVSWFR-DDQ---QVVESDNVKILKET---LGVCHLKIHALEVADQAEWKCIATNDF  828 (1075)
Q Consensus       757 ~~~~~~g~~~~l~C~v~g-~p~p~v~W~k-~g~---~i~~~~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~A~N~~  828 (1075)
                      ...+..|+.+.|+|.+.- .-.|.++|-| +|+   +|............   .....|.+..+-++|.|.|+|.|.=..
T Consensus        12 ~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s   91 (104)
T d1xaua_          12 KHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNS   91 (104)
T ss_dssp             EEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             eeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCCh
Confidence            356889999999999984 3478999976 443   44433332222222   236789999999999999999996444


Q ss_pred             c
Q psy16863        829 G  829 (1075)
Q Consensus       829 G  829 (1075)
                      |
T Consensus        92 ~   92 (104)
T d1xaua_          92 Q   92 (104)
T ss_dssp             E
T ss_pred             h
Confidence            4

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.36  E-value=0.00069  Score=56.34  Aligned_cols=80  Identities=16%  Similarity=0.155  Sum_probs=52.4

Q ss_pred             ccceeeccceeEEEEEecCCC--ceEE-EEecCCCeeeEEecCC-CccccCCCeEEEeeCCeEEEEEcccCCCCCEEEEE
Q psy16863        250 HDIAVKVGTRARLLVEIRSPT--EIKC-QFDLNNTIPFSFRAQG-DHPIFGNRFRAINRDGRTELNIRRVRRDDGGRYSV  325 (1075)
Q Consensus       250 ~~~~v~~g~~~~l~c~~~~~~--~~~c-~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C  325 (1075)
                      ..+.+.+|++++|.|......  .+.| +...+..+.+...... .......++..........|+|.+++++|+|.|.|
T Consensus         6 ~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   85 (103)
T d8faba1           6 PSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYC   85 (103)
T ss_dssp             SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEe
Confidence            467789999999999876432  2222 2222223333322221 12222566777778888899999999999999999


Q ss_pred             EEEe
Q psy16863        326 TASN  329 (1075)
Q Consensus       326 ~a~n  329 (1075)
                      .+.+
T Consensus        86 A~~~   89 (103)
T d8faba1          86 QAWD   89 (103)
T ss_dssp             EEEE
T ss_pred             eecC
Confidence            7764

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.36  E-value=0.00052  Score=56.38  Aligned_cols=77  Identities=8%  Similarity=0.090  Sum_probs=53.8

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEe
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATN  826 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N  826 (1075)
                      .+|.+...+ ...+..|++|+|.|... .+...+.|+|+|......  ............+.|..+...|+|.|+|....
T Consensus         5 pkPsLsa~P-~~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~--~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~   80 (99)
T d1nkra2           5 EKPSLSAQP-GPTVLAGENVTLSCSSR-SSYDMYHLSREGEAHERR--LPAGPKVNGTFQADFPLGPATHGGTYRCFGSF   80 (99)
T ss_dssp             CCCEEEEES-CSEECTTCEEEEEEEES-SCCSEEEEEETTCSSCEE--EECEEEETTEEEEEEEEEECCSCEEEEEEEEE
T ss_pred             CCCEEEEeC-CCcccCCCeEEEEECCC-CCccEEEEEECCCccccE--EEccccCCccEEEEEeccccccCEEEEEEeec
Confidence            356665544 34588999999999876 467799999998533211  11112233456788899999999999998764


Q ss_pred             C
Q psy16863        827 D  827 (1075)
Q Consensus       827 ~  827 (1075)
                      .
T Consensus        81 ~   81 (99)
T d1nkra2          81 H   81 (99)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.35  E-value=0.00028  Score=60.47  Aligned_cols=70  Identities=23%  Similarity=0.362  Sum_probs=49.2

Q ss_pred             ceeeeecCCeEEEEEEEecCC--CCeEEEEEC--CE---Eee-------------cCCcEEEEEe-eCcEEEEEEccccC
Q psy16863        756 KSCQATVNEEFKFTVQVSISP--EPKVSWFRD--DQ---QVV-------------ESDNVKILKE-TLGVCHLKIHALEV  814 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~---~i~-------------~~~~~~~~~~-~~~~~~L~I~~~~~  814 (1075)
                      ..+...+|++++|.|.+.+..  ...+.|||-  |+   -|.             ...++.+..+ ....+.|+|.++++
T Consensus         9 ~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~   88 (120)
T d1ypzf1           9 ISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEE   88 (120)
T ss_dssp             SEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCG
T ss_pred             CEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccccccc
Confidence            345677899999999987643  456999982  21   111             1134455443 34578899999999


Q ss_pred             CCCeEEEEEEE
Q psy16863        815 ADQAEWKCIAT  825 (1075)
Q Consensus       815 ~D~G~Y~C~A~  825 (1075)
                      +|+|.|.|.+.
T Consensus        89 ~Dsa~YyCA~~   99 (120)
T d1ypzf1          89 EDEAIYYCSYG   99 (120)
T ss_dssp             GGCSEEEEEEC
T ss_pred             ccceeEEEEEc
Confidence            99999999764

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.35  E-value=0.00039  Score=58.67  Aligned_cols=78  Identities=19%  Similarity=0.267  Sum_probs=50.6

Q ss_pred             eeecceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeC--CCce------------eccCcEEEEecCCeEEEE
Q psy16863        139 IRRLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQ--GDHP------------IFGNRFRAINRDGRTELN  204 (1075)
Q Consensus       139 ~~~~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~--~~~~------------~~~~~~~~~~~~~~~~L~  204 (1075)
                      ...+..+.+.+|++++|.|..+.....      .....+.|++.  |..+            ....||.....+..+.|+
T Consensus         5 tQsP~s~s~~~G~svtL~C~~s~~~~~------~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~   78 (111)
T d2gsia1           5 TQSPASLAVSLGQPATISCGASKSVRT------SGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLN   78 (111)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCCC------SSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEE
T ss_pred             EeeCCEEEECCCCCEEEEEEECCCCcc------CCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcc
Confidence            344567889999999999987642110      00112344432  1111            123577666666778999


Q ss_pred             EceeccCCCeEEEEEEEc
Q psy16863        205 IRRVRRDDGGRYSVTASN  222 (1075)
Q Consensus       205 I~~~~~~D~G~Y~C~a~n  222 (1075)
                      |.+++.+|+|.|.|.+..
T Consensus        79 I~~~~~~DsA~YyCa~~~   96 (111)
T d2gsia1          79 IHPVEEEDAATYYCSHIR   96 (111)
T ss_dssp             ESSCCGGGCEEEEEEECS
T ss_pred             cccccccCCceEEEEECC
Confidence            999999999999997643

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.34  E-value=0.00032  Score=59.40  Aligned_cols=81  Identities=14%  Similarity=0.146  Sum_probs=49.8

Q ss_pred             eecceeEEeeCCeEEEEEEecCCC-------eeEEEEc-cCCCeeEEEeeCCC-ceeccCcEEEEecCCeEEEEEceecc
Q psy16863        140 RRLHDIAVKVGTRARLLVEIRSPT-------EIKCQFD-LNNTIPFSFRAQGD-HPIFGNRFRAINRDGRTELNIRRVRR  210 (1075)
Q Consensus       140 ~~~~~~~v~~G~~~~l~c~~~~~~-------~~~c~~~-~~~~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~  210 (1075)
                      ..+..+.+.+|++++|.|..++..       .+.|.-. ....+.+..+.... ......|+.....+..+.|+|.+++.
T Consensus         6 Q~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~   85 (112)
T d1mjul1           6 QAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEA   85 (112)
T ss_dssp             CCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCG
T ss_pred             ecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccc
Confidence            345577889999999999876531       1222111 11122222222111 11123467666677788999999999


Q ss_pred             CCCeEEEEEE
Q psy16863        211 DDGGRYSVTA  220 (1075)
Q Consensus       211 ~D~G~Y~C~a  220 (1075)
                      +|+|.|.|..
T Consensus        86 ~DsAvYyCa~   95 (112)
T d1mjul1          86 EDVGVYYCLQ   95 (112)
T ss_dssp             GGCEEEEEEE
T ss_pred             cCCceEEEEe
Confidence            9999999953

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.34  E-value=0.00066  Score=56.91  Aligned_cols=80  Identities=11%  Similarity=0.097  Sum_probs=53.2

Q ss_pred             ccceeeccceeEEEEEecCCCc-----eEEEE-ecCCCeeeEEecCCCc-cccCCCeEEEeeCCeEEEEEcccCCCCCEE
Q psy16863        250 HDIAVKVGTRARLLVEIRSPTE-----IKCQF-DLNNTIPFSFRAQGDH-PIFGNRFRAINRDGRTELNIRRVRRDDGGR  322 (1075)
Q Consensus       250 ~~~~v~~g~~~~l~c~~~~~~~-----~~c~~-~~~~~~~~~w~~~~~~-~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~  322 (1075)
                      +.+.+.+|++++|.|..+....     +.|.- ..+..+.+..+..... .-..+++.....+....|+|.+++.+|+|.
T Consensus         8 ~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~   87 (110)
T d1oaql_           8 SALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAI   87 (110)
T ss_dssp             SEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEE
T ss_pred             CCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEe
Confidence            4567899999999999864321     33321 1122333332222211 122568888888888999999999999999


Q ss_pred             EEEEEEe
Q psy16863        323 YSVTASN  329 (1075)
Q Consensus       323 Y~C~a~n  329 (1075)
                      |.|.+..
T Consensus        88 YyCa~~~   94 (110)
T d1oaql_          88 YFCALWY   94 (110)
T ss_dssp             EEEEEEE
T ss_pred             EEEEccc
Confidence            9998765

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.32  E-value=0.0012  Score=54.43  Aligned_cols=72  Identities=11%  Similarity=0.159  Sum_probs=46.8

Q ss_pred             eccCCeEEEEEEEec-CC-CcEEEEEECCEecCCCCcEEE--EEcCCEEEEEEcccCCCCceeEEEEEEeCCCcee
Q psy16863        361 VKVGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKIYRT--QHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRSH  432 (1075)
Q Consensus       361 v~~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~~~~--~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~  432 (1075)
                      +..|+..+|.|.+.| .| ...|+|++||..+........  ..+|.........+..+|...|+|.+.+..-...
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~~l~~p   90 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEPDRYT   90 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECCCTTCCEEEEEEETTTTEE
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEecCCCCEEEEEEEeCCCCCC
Confidence            456888899999988 44 679999999998765433322  2334332211222345566689999999854433

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.31  E-value=0.00026  Score=60.38  Aligned_cols=70  Identities=11%  Similarity=0.229  Sum_probs=47.7

Q ss_pred             ceeeeecCCeEEEEEEEecCCCCeEEEEEC--CEEee------c---------CCcEEEEEeeCcEEEEEEccccCCCCe
Q psy16863        756 KSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQQVV------E---------SDNVKILKETLGVCHLKIHALEVADQA  818 (1075)
Q Consensus       756 ~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~~i~------~---------~~~~~~~~~~~~~~~L~I~~~~~~D~G  818 (1075)
                      ....+.+|++++|.|..+ .....+.|||-  |+.+.      .         ..++.........+.|.|.+++++|+|
T Consensus         7 ~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DSa   85 (114)
T d1ogae1           7 KYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTA   85 (114)
T ss_dssp             SEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCE
T ss_pred             CeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCce
Confidence            445688999999999987 44568999983  22110      0         112222222233567999999999999


Q ss_pred             EEEEEEEe
Q psy16863        819 EWKCIATN  826 (1075)
Q Consensus       819 ~Y~C~A~N  826 (1075)
                      .|.|.+..
T Consensus        86 ~YyCa~~~   93 (114)
T d1ogae1          86 FYLCASSS   93 (114)
T ss_dssp             EEEEEEES
T ss_pred             eEEEeecc
Confidence            99997764

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.31  E-value=0.00028  Score=59.17  Aligned_cols=70  Identities=20%  Similarity=0.229  Sum_probs=48.4

Q ss_pred             ceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCC--C------------ceeccCcEEEEecCCeEEEEEcee
Q psy16863        143 HDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG--D------------HPIFGNRFRAINRDGRTELNIRRV  208 (1075)
Q Consensus       143 ~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~--~------------~~~~~~~~~~~~~~~~~~L~I~~~  208 (1075)
                      ..+.+.+|++++|.|..+....          ..+.|++..  .            ......++.....+....|.|.++
T Consensus         8 ~sl~~~~G~svtl~C~~~~~~~----------~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l   77 (109)
T d1w72l1           8 PSVSVAPGQTARITCGGNNIGS----------RSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRV   77 (109)
T ss_dssp             SEEEECTTSCEEEEEECTTGGG----------SCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSC
T ss_pred             CeEEECCCCCEEEEEEcCCCCC----------cceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeee
Confidence            3578889999999998665321          123444321  1            111235666666677889999999


Q ss_pred             ccCCCeEEEEEEEc
Q psy16863        209 RRDDGGRYSVTASN  222 (1075)
Q Consensus       209 ~~~D~G~Y~C~a~n  222 (1075)
                      +.+|+|.|.|.+..
T Consensus        78 ~~~DsavYyCA~~~   91 (109)
T d1w72l1          78 EAGDEADYYCQVWD   91 (109)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ccCCCEEEEEEecC
Confidence            99999999998754

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00019  Score=61.22  Aligned_cols=69  Identities=9%  Similarity=0.283  Sum_probs=49.2

Q ss_pred             eeeecCCeEEEEEEEecC--CCCeEEEEEC--CE---Eee------------cCCcEEEEEe-eCcEEEEEEccccCCCC
Q psy16863        758 CQATVNEEFKFTVQVSIS--PEPKVSWFRD--DQ---QVV------------ESDNVKILKE-TLGVCHLKIHALEVADQ  817 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~--p~p~v~W~k~--g~---~i~------------~~~~~~~~~~-~~~~~~L~I~~~~~~D~  817 (1075)
                      ..+.+|++++|.|..++.  ....+.|||.  |.   .|.            ..+++.+..+ ..+.+.|+|.+++.+|+
T Consensus         9 ~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Ds   88 (113)
T d1smoa_           9 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDS   88 (113)
T ss_dssp             EECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccC
Confidence            567899999999997642  4457899983  21   111            1125555543 44678899999999999


Q ss_pred             eEEEEEEEe
Q psy16863        818 AEWKCIATN  826 (1075)
Q Consensus       818 G~Y~C~A~N  826 (1075)
                      |.|.|.+..
T Consensus        89 g~Y~Cav~~   97 (113)
T d1smoa_          89 GLYQCVIYQ   97 (113)
T ss_dssp             EEEEEEECC
T ss_pred             ceEEEEEEC
Confidence            999998743

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.30  E-value=0.00032  Score=59.63  Aligned_cols=72  Identities=15%  Similarity=0.288  Sum_probs=49.9

Q ss_pred             eecCceeeccCCeEEEEEEEecCCCcEEEEEEC--CEe---c-------------CCCCcEEEEE-cCCEEEEEEcccCC
Q psy16863        354 RRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DRK---L-------------EENKIYRTQH-DGNFYFIDLSSVSL  414 (1075)
Q Consensus       354 ~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~---l-------------~~~~~~~~~~-~g~~~~L~I~~v~~  414 (1075)
                      ..|..+.+.+|++++|.|...+ ....+.|||-  |+.   +             ....++.... ..+...|+|.++..
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (112)
T d1kgce1           4 QSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQ   82 (112)
T ss_dssp             EECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCG
T ss_pred             ECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCc
Confidence            3456677899999999998643 3568999982  211   1             1123333332 33456899999999


Q ss_pred             CCceeEEEEEEe
Q psy16863        415 FDSGRWTCLAEN  426 (1075)
Q Consensus       415 ~d~G~Y~C~a~n  426 (1075)
                      +|+|.|.|.+..
T Consensus        83 ~Dsa~YyCa~~~   94 (112)
T d1kgce1          83 EDSAVYLCASSL   94 (112)
T ss_dssp             GGCEEEEEEEES
T ss_pred             CCCEEEEEeeeC
Confidence            999999998764

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.30  E-value=0.00042  Score=58.47  Aligned_cols=82  Identities=16%  Similarity=0.097  Sum_probs=49.1

Q ss_pred             eecceeEEeeCCeEEEEEEecCCCe-----eEEEEc---cCCCeeEEEeeCC-CceeccCcEEEEecCCeEEEEEceecc
Q psy16863        140 RRLHDIAVKVGTRARLLVEIRSPTE-----IKCQFD---LNNTIPFSFRAQG-DHPIFGNRFRAINRDGRTELNIRRVRR  210 (1075)
Q Consensus       140 ~~~~~~~v~~G~~~~l~c~~~~~~~-----~~c~~~---~~~~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~L~I~~~~~  210 (1075)
                      ..+..+.+.+|++++|.|..+....     -...|.   ....+.+..+... ...-..++|.....+..+.|+|.+++.
T Consensus         6 QsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~   85 (112)
T d1ncwl1           6 QSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEA   85 (112)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             CcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECcccc
Confidence            4456788999999999998764321     112221   0111111111111 011123567666666778999999999


Q ss_pred             CCCeEEEEEEE
Q psy16863        211 DDGGRYSVTAS  221 (1075)
Q Consensus       211 ~D~G~Y~C~a~  221 (1075)
                      +|+|.|.|...
T Consensus        86 eDsAvYYC~~~   96 (112)
T d1ncwl1          86 EDLGVYYCWQG   96 (112)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CcCEeEEEEcC
Confidence            99999999553

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.30  E-value=0.0007  Score=57.19  Aligned_cols=80  Identities=14%  Similarity=0.084  Sum_probs=52.9

Q ss_pred             ccceeeccceeEEEEEecCCC----ceEEE-EecCCCeeeEEecCCCc-cccCCCeEEEeeCCeEEEEEcccCCCCCEEE
Q psy16863        250 HDIAVKVGTRARLLVEIRSPT----EIKCQ-FDLNNTIPFSFRAQGDH-PIFGNRFRAINRDGRTELNIRRVRRDDGGRY  323 (1075)
Q Consensus       250 ~~~~v~~g~~~~l~c~~~~~~----~~~c~-~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y  323 (1075)
                      +.+.+.+|++++|.|..+...    .+.|. ...+....+..+..... .-..+++....+.....|+|.+++.+|++.|
T Consensus         8 ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Y   87 (114)
T d2rhea_           8 PSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADY   87 (114)
T ss_dssp             SEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceE
Confidence            457788999999999876432    23322 12222333333322221 1225677777788889999999999999999


Q ss_pred             EEEEEe
Q psy16863        324 SVTASN  329 (1075)
Q Consensus       324 ~C~a~n  329 (1075)
                      .|.+..
T Consensus        88 yCA~~~   93 (114)
T d2rhea_          88 YCAAWN   93 (114)
T ss_dssp             EEEEEE
T ss_pred             EEeecC
Confidence            998764

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.30  E-value=0.00074  Score=55.53  Aligned_cols=70  Identities=13%  Similarity=0.144  Sum_probs=48.0

Q ss_pred             ecCCeEEEEEEEecC-CCCceEEEEeCCeEEecCCcEEEEEcCCceEE-EEEeeeeecCCceEEEEEECCCC
Q psy16863        563 KIGTSAILECQVLVP-PWPRSIYWYNKEGVVEASDKYHIMADGLGGYS-IEINYLEAVDDGEWKCVATSSSG  632 (1075)
Q Consensus       563 ~~G~~~~L~C~~~~~-p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~-L~i~~~~~~d~G~Y~C~a~n~~g  632 (1075)
                      ..|+.++|.|.+.|. |....++|+++|..+..........++.+.+. .....+..++...|+|.+.+..-
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~sl   87 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDSM   87 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECTTS
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeCCC
Confidence            468889999999984 55568999999998764433334444444433 22334456677899999998753

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.28  E-value=0.00055  Score=57.92  Aligned_cols=74  Identities=15%  Similarity=0.371  Sum_probs=50.6

Q ss_pred             eeccceEeecCCeEEEEEEEecCCCCceEEEEeCC--eE---E---------e----cCCcEEEEEcCCceEEEEEeeee
Q psy16863        555 KEVENVKAKIGTSAILECQVLVPPWPRSIYWYNKE--GV---V---------E----ASDKYHIMADGLGGYSIEINYLE  616 (1075)
Q Consensus       555 ~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~~--~~---i---------~----~~~~~~~~~~~~~~~~L~i~~~~  616 (1075)
                      ..|....+.+|++++|.|...... . .+.||+..  +.   +         .    ...++.....+...+.|+|.++.
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~~~-~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~   81 (111)
T d2esve1           4 QFPSHSVIEKGQTVTLRCDPISGH-D-NLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAE   81 (111)
T ss_dssp             EECSEEEEETTCCEEEEEECCTTC-S-EEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCC
T ss_pred             ECCCEEEECCCCCEEEEEEECCCC-c-eEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcc
Confidence            345667789999999999865432 3 79999731  11   1         0    12334444334445789999999


Q ss_pred             ecCCceEEEEEECC
Q psy16863        617 AVDDGEWKCVATSS  630 (1075)
Q Consensus       617 ~~d~G~Y~C~a~n~  630 (1075)
                      .+|+|.|.|.+...
T Consensus        82 ~~Dsa~YyCa~~~~   95 (111)
T d2esve1          82 LEDSGVYFCASSQD   95 (111)
T ss_dssp             GGGCEEEEEEEESS
T ss_pred             cCCCceEEEeeeCC
Confidence            99999999987643

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.28  E-value=0.0002  Score=58.38  Aligned_cols=78  Identities=6%  Similarity=0.043  Sum_probs=51.0

Q ss_pred             CCeEEeccceeeeecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeC
Q psy16863        748 APKFIEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEVADQAEWKCIATND  827 (1075)
Q Consensus       748 ~p~~~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~  827 (1075)
                      +|.+...+ ...+..|++|+|.|... .....+.++|+|..-..-..............+.|.+++..|+|.|+|.-...
T Consensus         2 KPsLsa~P-~~~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1           2 KPSLLAHP-GPLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             CCEEEEES-CSEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CCEEEeeC-CCccCCCCcEEEEECCC-CCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            34444433 34588999999999977 45668999998853211000001111112457999999999999999987643

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.27  E-value=0.00049  Score=58.34  Aligned_cols=75  Identities=13%  Similarity=0.133  Sum_probs=50.5

Q ss_pred             cceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCC--C------------ceeccCcEEEEecCCeEEEEEce
Q psy16863        142 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG--D------------HPIFGNRFRAINRDGRTELNIRR  207 (1075)
Q Consensus       142 ~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~--~------------~~~~~~~~~~~~~~~~~~L~I~~  207 (1075)
                      +..+.+.+|++++|.|..++...       .....+.|++..  .            .....+++..........|+|.+
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~-------~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   79 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIV-------GSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISG   79 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSS-------SCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECS
T ss_pred             CCcEEECCCCCEEEEEEeCCCCC-------CCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCc
Confidence            45778999999999998765321       011224455421  1            11123456666666788999999


Q ss_pred             eccCCCeEEEEEEEcC
Q psy16863        208 VRRDDGGRYSVTASNE  223 (1075)
Q Consensus       208 ~~~~D~G~Y~C~a~n~  223 (1075)
                      ++.+|+|.|.|.+.+.
T Consensus        80 l~~~Dsa~YyCa~~~~   95 (112)
T d1lgva1          80 LQAEDEADYYCSSYDG   95 (112)
T ss_dssp             CCGGGCEEEEEEEECS
T ss_pred             CccccCEEEEEeeecC
Confidence            9999999999987653

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00034  Score=58.18  Aligned_cols=81  Identities=11%  Similarity=0.206  Sum_probs=48.4

Q ss_pred             CCCeeeeecCceeeccCCeEEEEEEEec-CC-CcEEEEEECCEecCCCCc---EEEEEcCCEE---EEEEcccCCCCcee
Q psy16863        348 DAPAFIRRLHDIAVKVGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKI---YRTQHDGNFY---FIDLSSVSLFDSGR  419 (1075)
Q Consensus       348 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~---~~~~~~g~~~---~L~I~~v~~~d~G~  419 (1075)
                      .+|.+..-++...-..++.++|.|.+.| .| ...|+|++||..+..+..   .....+|...   .|.|..-.-.....
T Consensus         4 ~~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~   83 (102)
T d1rzfl2           4 AAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRS   83 (102)
T ss_dssp             BCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSC
T ss_pred             CCCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCE
Confidence            4555543322222234677999999987 33 669999999998865422   1122344443   44443322222447


Q ss_pred             EEEEEEeCC
Q psy16863        420 WTCLAENAV  428 (1075)
Q Consensus       420 Y~C~a~n~~  428 (1075)
                      |+|.+.+..
T Consensus        84 ytC~V~H~~   92 (102)
T d1rzfl2          84 YSCQVTHEG   92 (102)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEEECC
Confidence            999999974

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.26  E-value=0.00044  Score=57.86  Aligned_cols=71  Identities=13%  Similarity=0.272  Sum_probs=51.1

Q ss_pred             ceeeccCCeEEEEEEEecC--CCcEEEEEEC--CEe----cC---C--------CCcEEEEEc--CCEEEEEEcccCCCC
Q psy16863        358 DIAVKVGTRARLLVEIRSP--TEIKIHWYRN--DRK----LE---E--------NKIYRTQHD--GNFYFIDLSSVSLFD  416 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~~g~--p~~~v~W~k~--g~~----l~---~--------~~~~~~~~~--g~~~~L~I~~v~~~d  416 (1075)
                      ...+.+|++++|.|..++.  ....+.|+|.  |+.    +.   .        ..|+.+..+  .+..+|+|.+++.+|
T Consensus         4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eD   83 (110)
T d1u9ka_           4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTD   83 (110)
T ss_dssp             EEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             CCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCC
Confidence            4578899999999998653  3557899983  321    11   0        124555543  567789999999999


Q ss_pred             ceeEEEEEEeCC
Q psy16863        417 SGRWTCLAENAV  428 (1075)
Q Consensus       417 ~G~Y~C~a~n~~  428 (1075)
                      +|.|.|...+..
T Consensus        84 sa~YyCa~~~~~   95 (110)
T d1u9ka_          84 SGLYRCVIYHPP   95 (110)
T ss_dssp             CEEEEEEEECTT
T ss_pred             CEEEEEEEeCCC
Confidence            999999986553

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.26  E-value=0.0005  Score=58.48  Aligned_cols=72  Identities=8%  Similarity=0.200  Sum_probs=49.2

Q ss_pred             ccceeeeecCCeEEEEEEEecCCCCeEEEEEC--CEEee---------------cCCcEEEEEeeCcEEEEEEccccCCC
Q psy16863        754 GLKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQQVV---------------ESDNVKILKETLGVCHLKIHALEVAD  816 (1075)
Q Consensus       754 ~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~~i~---------------~~~~~~~~~~~~~~~~L~I~~~~~~D  816 (1075)
                      .+....+.+|++++|.|.... ....+.|||-  |+.+.               ...++.........+.|+|.+++++|
T Consensus         6 sP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   84 (113)
T d1j8he1           6 SSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQ   84 (113)
T ss_dssp             SCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGG
T ss_pred             cCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCC
Confidence            344556889999999998753 3567999982  22111               01233333333445789999999999


Q ss_pred             CeEEEEEEEe
Q psy16863        817 QAEWKCIATN  826 (1075)
Q Consensus       817 ~G~Y~C~A~N  826 (1075)
                      +|.|.|.+..
T Consensus        85 sa~YyCa~~~   94 (113)
T d1j8he1          85 TSMYLCASSS   94 (113)
T ss_dssp             CEEEEEEEEC
T ss_pred             cccEEeeEcc
Confidence            9999998864

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00033  Score=59.47  Aligned_cols=92  Identities=16%  Similarity=0.203  Sum_probs=51.6

Q ss_pred             ceeeccceeEEEEEecCCC-----ceEEEEecCCCeeeEEecCCCcccc--CCCe--EEEeeCCeEEEEEcccCCCCCEE
Q psy16863        252 IAVKVGTRARLLVEIRSPT-----EIKCQFDLNNTIPFSFRAQGDHPIF--GNRF--RAINRDGRTELNIRRVRRDDGGR  322 (1075)
Q Consensus       252 ~~v~~g~~~~l~c~~~~~~-----~~~c~~~~~~~~~~~w~~~~~~~~~--~~~~--~~~~~~~~~~L~I~~~~~~d~G~  322 (1075)
                      +.+..|++++|.|....+.     .+.+.|.......+..+..+.....  ..++  +.....+..+|+|.+++.+|+|.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence            3567899999999886432     2344444333332222222211111  1111  22333445589999999999999


Q ss_pred             EEEEEEe--CCee---EEEEEEEEEe
Q psy16863        323 YSVTASN--ESGY---STAKFELSVE  343 (1075)
Q Consensus       323 Y~C~a~n--~~g~---~~~~~~l~V~  343 (1075)
                      |.|.+..  ..|.   ....+.|.|.
T Consensus        84 Y~C~V~~~~~~~~~~~~~~~~~L~V~  109 (110)
T d1ncna_          84 YQCIIHHKKPTGMIRIHQMNSELSVL  109 (110)
T ss_dssp             EEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred             EEEEEEecCCCceEEEEcceEEEEEE
Confidence            9999864  3332   2444555553

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.24  E-value=0.00083  Score=54.86  Aligned_cols=70  Identities=19%  Similarity=0.353  Sum_probs=44.8

Q ss_pred             ccCCeEEEEEEEec-CC-CcEEEEEECCEecCCCCc---EEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCCce
Q psy16863        362 KVGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKI---YRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVGRS  431 (1075)
Q Consensus       362 ~~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~---~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~  431 (1075)
                      ..|+..+|.|.+.| .| ...|+|++||.++..+..   .....+|.........+...+...|+|.+.+..-..
T Consensus        14 ~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~sl~~   88 (97)
T d1uvqb1          14 ALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQS   88 (97)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECTTCSS
T ss_pred             cCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeCCCCC
Confidence            44677899999987 33 689999999988765421   122344555544444556677779999999875443

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.24  E-value=0.00052  Score=55.86  Aligned_cols=77  Identities=10%  Similarity=0.034  Sum_probs=51.8

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCcEEEE-EcCCEEEEEEcccCCCCceeEEEEEEeC
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKIYRTQ-HDGNFYFIDLSSVSLFDSGRWTCLAENA  427 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~-~~g~~~~L~I~~v~~~d~G~Y~C~a~n~  427 (1075)
                      .|.+... +...|..|++|+|.|... .....+.++|+|..-......... ..+....+.|.+++..|+|.|+|.-...
T Consensus         2 KPsLsa~-P~~~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1           2 KPSLLAH-PGPLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             CCEEEEE-SCSEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CCEEEee-CCCccCCCCcEEEEECCC-CCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            3444333 356788999999999973 446799999988532211111111 2233456889999999999999987543

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00083  Score=54.99  Aligned_cols=77  Identities=10%  Similarity=0.088  Sum_probs=49.2

Q ss_pred             CCeeeeecCceeeccCCeEEEEEEEecCCCcEEEEEECCEecCCCCc--EEEEEcCCEEEEEEcccCCCCceeEEEEEEe
Q psy16863        349 APAFIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRNDRKLEENKI--YRTQHDGNFYFIDLSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       349 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~--~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n  426 (1075)
                      .|.+...+ ...|..|++|+|.|... .....+.++|+|........  ......+....+.|.+++..|+|.|+|.-..
T Consensus         4 kPsLsa~P-~~~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   81 (98)
T d1ugna2           4 KPTLSAQP-SPVVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYD   81 (98)
T ss_dssp             CCEEEEES-CSEEETTCCEEEEEECS-SCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEEC
T ss_pred             CCEEEeeC-CCccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEc
Confidence            45555444 44689999999999863 34679999999875432211  1112244556789999999999999998754


Q ss_pred             C
Q psy16863        427 A  427 (1075)
Q Consensus       427 ~  427 (1075)
                      .
T Consensus        82 ~   82 (98)
T d1ugna2          82 S   82 (98)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00097  Score=55.43  Aligned_cols=69  Identities=13%  Similarity=0.188  Sum_probs=48.0

Q ss_pred             ecCCeEEEEEEEec-CCCC-eEEEEECCEEeecCCcEEEEEeeCcE----EEEEEccccCCCCeEEEEEEEeCCc
Q psy16863        761 TVNEEFKFTVQVSI-SPEP-KVSWFRDDQQVVESDNVKILKETLGV----CHLKIHALEVADQAEWKCIATNDFG  829 (1075)
Q Consensus       761 ~~g~~~~l~C~v~g-~p~p-~v~W~k~g~~i~~~~~~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~A~N~~G  829 (1075)
                      ..+.+++|.|.+.| .|.. .|+|++||+.+............++.    +.|.|..-.......|+|.+.....
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGH   93 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTE
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCE
Confidence            34567999999998 5644 79999999988754332222333333    4577776655567789999998753

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.21  E-value=0.00072  Score=54.25  Aligned_cols=66  Identities=20%  Similarity=0.204  Sum_probs=42.9

Q ss_pred             cCCeEEEEEEEecC-C-CcEEEEEECCEecCCCCcE---EEEEcCCEEEEEEcccCCCCceeEEEEEEeCC
Q psy16863        363 VGTRARLLVEIRSP-T-EIKIHWYRNDRKLEENKIY---RTQHDGNFYFIDLSSVSLFDSGRWTCLAENAV  428 (1075)
Q Consensus       363 ~G~~v~l~C~~~g~-p-~~~v~W~k~g~~l~~~~~~---~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~  428 (1075)
                      .++.++|.|.+.|. | ...|+|++||+.+..+...   ....+|.........+...+...|+|.+.+.+
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~ytC~V~H~~   84 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYYTCHVYHQG   84 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEESSTTTTCEEEEECSS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecCcCCCEEEEEEEECC
Confidence            45789999999883 3 6799999999988654322   22334443322222233445558999998864

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.0015  Score=48.53  Aligned_cols=57  Identities=16%  Similarity=0.311  Sum_probs=42.2

Q ss_pred             ccCCeEEEEEEEecCC--CcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEE
Q psy16863        362 KVGTRARLLVEIRSPT--EIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAE  425 (1075)
Q Consensus       362 ~~G~~v~l~C~~~g~p--~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~  425 (1075)
                      ..|..+.|+|.++..+  ..--.|.|+|+.|.....     .+....+.|..  .+++|+|.|...
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~-----~~~~tey~V~~--~D~SGeY~CVFl   68 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL-----PGQKTEFKVDS--DDQWGEYSCVFL   68 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTC-----CCSEEEEEECG--GGCCEEEEEEEE
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCC-----CCCceEEEEec--CCCCceEEEEEc
Confidence            4688899999996644  347799999999976532     23334466664  789999999965

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.20  E-value=0.00028  Score=60.20  Aligned_cols=72  Identities=15%  Similarity=0.239  Sum_probs=48.5

Q ss_pred             ecCceeeccCCeEEEEEEEecCCCcEEEEEEC--CEec------CC---------CCcEEEE-EcCCEEEEEEcccCCCC
Q psy16863        355 RLHDIAVKVGTRARLLVEIRSPTEIKIHWYRN--DRKL------EE---------NKIYRTQ-HDGNFYFIDLSSVSLFD  416 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~--g~~l------~~---------~~~~~~~-~~g~~~~L~I~~v~~~d  416 (1075)
                      .|..+.+.+|++++|.|..+. ....+.|||.  |+.+      ..         ..+.... ..+....|.|.++..+|
T Consensus         5 sP~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (114)
T d1ogae1           5 SPKYLFRKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNP   83 (114)
T ss_dssp             SCSEEEEETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCC
T ss_pred             cCCeEEEcCCCCEEEEEEEec-CCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCC
Confidence            345678899999999999853 4568999983  2111      00         1111111 22344579999999999


Q ss_pred             ceeEEEEEEeC
Q psy16863        417 SGRWTCLAENA  427 (1075)
Q Consensus       417 ~G~Y~C~a~n~  427 (1075)
                      +|.|.|.+...
T Consensus        84 Sa~YyCa~~~~   94 (114)
T d1ogae1          84 TAFYLCASSSR   94 (114)
T ss_dssp             CEEEEEEEESS
T ss_pred             ceeEEEeeccC
Confidence            99999977643

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00085  Score=54.94  Aligned_cols=69  Identities=20%  Similarity=0.399  Sum_probs=51.4

Q ss_pred             CCCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEecc-----------CCCEEEEEeCCCCCCCcEEEEEEEE
Q psy16863        445 YKAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK-----------AGDIFALTANPKDPSSLGTYTCEAV  513 (1075)
Q Consensus       445 ~~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~-----------~~~~~~l~i~~~~~~d~G~Y~C~a~  513 (1075)
                      +..|.+...+..++..|++|+|.|... .....+.++|+|....           .+....+.|..+...|+|.|+|.-.
T Consensus         2 ~pkPsLsa~P~~~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~   80 (98)
T d1ugna2           2 YIKPTLSAQPSPVVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAY   80 (98)
T ss_dssp             SCCCEEEEESCSEEETTCCEEEEEECS-SCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEE
T ss_pred             CCCCEEEeeCCCccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeE
Confidence            456788888888899999999999864 3455888999887532           1234578999999999999999875


Q ss_pred             e
Q psy16863        514 N  514 (1075)
Q Consensus       514 n  514 (1075)
                      .
T Consensus        81 ~   81 (98)
T d1ugna2          81 D   81 (98)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00077  Score=54.89  Aligned_cols=66  Identities=20%  Similarity=0.219  Sum_probs=43.3

Q ss_pred             CCeEEEEEEEecC--CCcEEEEEECCEecCCCCcE---EEEEcCCEEEEEEcccCCCCceeEEEEEEeCCC
Q psy16863        364 GTRARLLVEIRSP--TEIKIHWYRNDRKLEENKIY---RTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG  429 (1075)
Q Consensus       364 G~~v~l~C~~~g~--p~~~v~W~k~g~~l~~~~~~---~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g  429 (1075)
                      +..++|.|.+.|.  ....|+|++||..+..+...   ....++.........+...+...|+|++.+..-
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC~V~H~~L   85 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGL   85 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEECTTC
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEEEEEECcC
Confidence            5689999999883  36799999999988654321   112233333333333445566689999998743

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.19  E-value=0.00038  Score=59.14  Aligned_cols=75  Identities=20%  Similarity=0.297  Sum_probs=51.2

Q ss_pred             eeeecCceeeccCCeEEEEEEEecCCCcEEEEEECC--Eec------C---------CCCcEEEE-EcCCEEEEEEcccC
Q psy16863        352 FIRRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRND--RKL------E---------ENKIYRTQ-HDGNFYFIDLSSVS  413 (1075)
Q Consensus       352 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g--~~l------~---------~~~~~~~~-~~g~~~~L~I~~v~  413 (1075)
                      +...|..+.+.+|++++|.|..... ...+.|||-.  +.+      .         ...++... ..+....|+|.++.
T Consensus         4 VtQ~P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (113)
T d1nfdb1           4 VVQSPRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALE   82 (113)
T ss_dssp             CEEECSEEEEETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCC
T ss_pred             EEEcCCEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccC
Confidence            4455677789999999999986443 4589999832  111      0         01222222 23344689999999


Q ss_pred             CCCceeEEEEEEeC
Q psy16863        414 LFDSGRWTCLAENA  427 (1075)
Q Consensus       414 ~~d~G~Y~C~a~n~  427 (1075)
                      .+|+|.|.|.+...
T Consensus        83 ~~Dsa~YyCa~~~~   96 (113)
T d1nfdb1          83 LEDSAMYFCASSLR   96 (113)
T ss_dssp             GGGCEEECEEEESS
T ss_pred             cCCceeEEEEeecC
Confidence            99999999987643

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.18  E-value=2.1e-05  Score=64.76  Aligned_cols=72  Identities=15%  Similarity=0.367  Sum_probs=49.8

Q ss_pred             ceeeccCCeEEEEEEEecCCCcEEEEEE--CCEec------------CCCCcEEEE--EcCCEEEEEEcccCCCCceeEE
Q psy16863        358 DIAVKVGTRARLLVEIRSPTEIKIHWYR--NDRKL------------EENKIYRTQ--HDGNFYFIDLSSVSLFDSGRWT  421 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~~g~p~~~v~W~k--~g~~l------------~~~~~~~~~--~~g~~~~L~I~~v~~~d~G~Y~  421 (1075)
                      .+.|.+|++|+|.|...+ ....+.|||  .|+.+            ....++.+.  ...+...|+|.+++.+|+|.|.
T Consensus         2 slsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   80 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYF   80 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCE
T ss_pred             CceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEe
Confidence            457889999999998754 356899998  23221            011233332  2334457999999999999999


Q ss_pred             EEEEeCCCc
Q psy16863        422 CLAENAVGR  430 (1075)
Q Consensus       422 C~a~n~~g~  430 (1075)
                      |.+....|.
T Consensus        81 CA~~~~~g~   89 (96)
T d1ymmd1          81 CATDTTSGT   89 (96)
T ss_dssp             EEEEETTSC
T ss_pred             EeEecCCCC
Confidence            998766553

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.18  E-value=0.00066  Score=57.54  Aligned_cols=72  Identities=10%  Similarity=-0.017  Sum_probs=47.0

Q ss_pred             cceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeEEEeeCC--------------CceeccCcEEEEecCCeEEEEEce
Q psy16863        142 LHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPFSFRAQG--------------DHPIFGNRFRAINRDGRTELNIRR  207 (1075)
Q Consensus       142 ~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~~W~~~~--------------~~~~~~~~~~~~~~~~~~~L~I~~  207 (1075)
                      +..+.+.+|++++|.|..++...         ...+.|++..              .......++.+..+.....|+|.+
T Consensus         5 P~~~~~~~G~svtl~C~~s~~~~---------~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~   75 (112)
T d1kgcd1           5 PNSMESNEEEPVHLPCNHSTISG---------TDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHR   75 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESCCCT---------TCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESS
T ss_pred             CCEEEECCCCCEEEEEEEeCCCc---------cccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEee
Confidence            34577889999999998764221         1123444421              111122345555556677899999


Q ss_pred             eccCCCeEEEEEEEc
Q psy16863        208 VRRDDGGRYSVTASN  222 (1075)
Q Consensus       208 ~~~~D~G~Y~C~a~n  222 (1075)
                      ++.+|+|.|.|.+..
T Consensus        76 ~~~~Dsa~YyCa~~~   90 (112)
T d1kgcd1          76 ATLRDAAVYYCILPL   90 (112)
T ss_dssp             CCGGGCEEEEEECCC
T ss_pred             cccccceeEeeeEec
Confidence            999999999997643

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00042  Score=59.00  Aligned_cols=72  Identities=14%  Similarity=0.230  Sum_probs=48.7

Q ss_pred             ceEeecCCeEEEEEEEecCC-CCceEEEEeC--CeE---Ee------------cCCcEEEEEc-CCceEEEEEeeeeecC
Q psy16863        559 NVKAKIGTSAILECQVLVPP-WPRSIYWYNK--EGV---VE------------ASDKYHIMAD-GLGGYSIEINYLEAVD  619 (1075)
Q Consensus       559 ~~~v~~G~~~~L~C~~~~~p-~p~~v~W~~~--~~~---i~------------~~~~~~~~~~-~~~~~~L~i~~~~~~d  619 (1075)
                      ...+.+|++++|.|..++.. ....+.||+.  +..   +.            ...++.+..+ ..+.++|+|.+++.+|
T Consensus         8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~D   87 (113)
T d1smoa_           8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVED   87 (113)
T ss_dssp             EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCccc
Confidence            46678899999999876421 1226889973  111   11            1124555433 4456789999999999


Q ss_pred             CceEEEEEECC
Q psy16863        620 DGEWKCVATSS  630 (1075)
Q Consensus       620 ~G~Y~C~a~n~  630 (1075)
                      +|.|.|.+...
T Consensus        88 sg~Y~Cav~~~   98 (113)
T d1smoa_          88 SGLYQCVIYQP   98 (113)
T ss_dssp             CEEEEEEECCT
T ss_pred             CceEEEEEECC
Confidence            99999987543

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.17  E-value=0.0011  Score=56.12  Aligned_cols=82  Identities=15%  Similarity=0.147  Sum_probs=54.0

Q ss_pred             cccccceeeccceeEEEEEecCCC-------ceEEE-EecCCCeeeEEecCCCccc-cCCCeEEEeeCCeEEEEEcccCC
Q psy16863        247 RRLHDIAVKVGTRARLLVEIRSPT-------EIKCQ-FDLNNTIPFSFRAQGDHPI-FGNRFRAINRDGRTELNIRRVRR  317 (1075)
Q Consensus       247 ~~~~~~~v~~g~~~~l~c~~~~~~-------~~~c~-~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~~~~~L~I~~~~~  317 (1075)
                      ..|..+.+.+|++++|.|..+...       .+.|. -..+..+.+..+....... ..+++.....+....|+|.+++.
T Consensus         7 Q~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~   86 (113)
T d1n4xl_           7 QTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEA   86 (113)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCG
T ss_pred             CcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCc
Confidence            445677889999999999976421       23332 2223333333333222222 25677777778888999999999


Q ss_pred             CCCEEEEEEEE
Q psy16863        318 DDGGRYSVTAS  328 (1075)
Q Consensus       318 ~d~G~Y~C~a~  328 (1075)
                      +|+|.|.|...
T Consensus        87 ~DsavYyCa~~   97 (113)
T d1n4xl_          87 EDLGIYYCFQG   97 (113)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccCEEEEEEEC
Confidence            99999999544

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.16  E-value=0.00032  Score=60.55  Aligned_cols=74  Identities=15%  Similarity=0.107  Sum_probs=49.8

Q ss_pred             ecCceeeccCCeEEEEEEEecC---C---CcEEEEEECCEe----c-----------CCCCcEEEEE--cCCEEEEEEcc
Q psy16863        355 RLHDIAVKVGTRARLLVEIRSP---T---EIKIHWYRNDRK----L-----------EENKIYRTQH--DGNFYFIDLSS  411 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~~g~---p---~~~v~W~k~g~~----l-----------~~~~~~~~~~--~g~~~~L~I~~  411 (1075)
                      .|..+.+.+|+.|+|.|.+...   +   ...+.|++.+..    +           ....++.+..  ..+...|+|.+
T Consensus         6 ~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~   85 (118)
T d1qfoa_           6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKD   85 (118)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred             CCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECC
Confidence            3456789999999999998531   1   235678874321    1           1123444432  23445699999


Q ss_pred             cCCCCceeEEEEEEeCC
Q psy16863        412 VSLFDSGRWTCLAENAV  428 (1075)
Q Consensus       412 v~~~d~G~Y~C~a~n~~  428 (1075)
                      ++.+|+|.|.|.+....
T Consensus        86 v~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          86 LKPEDSGTYNFRFEISD  102 (118)
T ss_dssp             CCGGGCEEEEEEEECC-
T ss_pred             CChhHCEEEEEEEEeCC
Confidence            99999999999997653

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.0017  Score=52.41  Aligned_cols=68  Identities=15%  Similarity=0.360  Sum_probs=46.7

Q ss_pred             cCCeEEEEEEEec-CCCCceEEEEeCCeEEecC--CcEEEEEcCCceEE-EEEeeeeecCCceEEEEEECCC
Q psy16863        564 IGTSAILECQVLV-PPWPRSIYWYNKEGVVEAS--DKYHIMADGLGGYS-IEINYLEAVDDGEWKCVATSSS  631 (1075)
Q Consensus       564 ~G~~~~L~C~~~~-~p~p~~v~W~~~~~~i~~~--~~~~~~~~~~~~~~-L~i~~~~~~d~G~Y~C~a~n~~  631 (1075)
                      .++.++|.|.+.+ .|....++|+++|..+...  .......++.+.+. ...-.+...+...|+|.+.+..
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~s   85 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPG   85 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            4677899999998 4667799999999987543  22234445544443 2233445566778999999874

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00082  Score=54.00  Aligned_cols=79  Identities=15%  Similarity=0.161  Sum_probs=56.7

Q ss_pred             cceeeeecCCeEEEEEEEecCCCCeEEE-EECCEEeecC-CcEEEEEeeCcEEEEEEccccCCCCeEEEEEEEeCCceEE
Q psy16863        755 LKSCQATVNEEFKFTVQVSISPEPKVSW-FRDDQQVVES-DNVKILKETLGVCHLKIHALEVADQAEWKCIATNDFGQSI  832 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p~p~v~W-~k~g~~i~~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~  832 (1075)
                      +.-+.+.+|+.+.+-|.++ .|..+++- .+++..+... ..+.. ....   -++|.+++..|+|.|.|.|... |...
T Consensus        12 p~~V~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p~g~~v~~-Dpk~---Gf~I~~~~~~~~g~y~C~a~~~-g~~~   85 (95)
T d1fltx_          12 PEIIHMTEGRELVIPCRVT-SPNITVTLKKFPLDTLIPDGKRIIW-DSRK---GFIISNATYKEIGLLTCEATVN-GHLY   85 (95)
T ss_dssp             CEEEEECTTSCEEECCCBS-CTTSCCEEEETTTEEECCCSSSEEE-ETTT---EEEESSCCGGGCEEEEEEEEET-TEEE
T ss_pred             CCEEEEeCCCCEEEEccCC-CCCceeEEEeccCCccCCCCCEEEE-CCCC---CEEEeCCCcccCeEEEEEEEEC-CEEE
Confidence            3445688999999999999 78887654 4477766543 33333 2222   3899999999999999999876 6666


Q ss_pred             EEEEEEE
Q psy16863        833 TSCFLKL  839 (1075)
Q Consensus       833 ~s~~l~V  839 (1075)
                      .|.+|..
T Consensus        86 ~S~yl~~   92 (95)
T d1fltx_          86 KTNYLTH   92 (95)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            6655543

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00051  Score=58.92  Aligned_cols=71  Identities=17%  Similarity=0.282  Sum_probs=47.7

Q ss_pred             cCceeeccCCeEEEEEEEecCCC---cEEEEEECC--Ee---c-----C-------CCCcEEEEEcCCEEEEEEcccCCC
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPTE---IKIHWYRND--RK---L-----E-------ENKIYRTQHDGNFYFIDLSSVSLF  415 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p~---~~v~W~k~g--~~---l-----~-------~~~~~~~~~~g~~~~L~I~~v~~~  415 (1075)
                      |..+.+.+|+.++|.|.......   ..+.|||..  +.   +     .       .........++....|.|.++..+
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAM   85 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGG
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccC
Confidence            34456789999999999854322   268999843  21   1     0       001111234456678999999999


Q ss_pred             CceeEEEEEEe
Q psy16863        416 DSGRWTCLAEN  426 (1075)
Q Consensus       416 d~G~Y~C~a~n  426 (1075)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (118)
T d1i8lc_          86 DTGLYICKVEL   96 (118)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CCEEEEEeEec
Confidence            99999998764

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.11  E-value=0.0016  Score=54.19  Aligned_cols=66  Identities=24%  Similarity=0.292  Sum_probs=49.2

Q ss_pred             eeecCCeEEEEEEEecCCC--CeEEEEEC--CEEe------ec----------CCcEEEEEee-CcEEEEEEccccCCCC
Q psy16863        759 QATVNEEFKFTVQVSISPE--PKVSWFRD--DQQV------VE----------SDNVKILKET-LGVCHLKIHALEVADQ  817 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p~--p~v~W~k~--g~~i------~~----------~~~~~~~~~~-~~~~~L~I~~~~~~D~  817 (1075)
                      .+.+|++++|+|.++|..-  -.+.|+|.  |+.+      ..          ..|+.+..+. ..+..|.|++++.+|+
T Consensus        11 ~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eDt   90 (120)
T d1dn0b1          11 LLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADT   90 (120)
T ss_dssp             EECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccccc
Confidence            4778999999999998653  36889873  3221      11          2467777653 3477899999999999


Q ss_pred             eEEEEEEE
Q psy16863        818 AEWKCIAT  825 (1075)
Q Consensus       818 G~Y~C~A~  825 (1075)
                      +.|-| |.
T Consensus        91 A~YYC-Ar   97 (120)
T d1dn0b1          91 AVYYC-AR   97 (120)
T ss_dssp             EEEEE-EE
T ss_pred             cEEEE-Ee
Confidence            99999 54

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=0.00041  Score=59.76  Aligned_cols=73  Identities=16%  Similarity=0.231  Sum_probs=49.4

Q ss_pred             cceeeeecCCeEEEEEEEecC---C---CCeEEEEECCE----Ee-e----------cCCcEEEEEe-eCcEEEEEEccc
Q psy16863        755 LKSCQATVNEEFKFTVQVSIS---P---EPKVSWFRDDQ----QV-V----------ESDNVKILKE-TLGVCHLKIHAL  812 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~---p---~p~v~W~k~g~----~i-~----------~~~~~~~~~~-~~~~~~L~I~~~  812 (1075)
                      ++.+.+.+|+.|.|.|.+...   +   ...+.|++.+.    .+ .          ...++.+..+ ..+.+.|.|.++
T Consensus         7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   86 (118)
T d1qfoa_           7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDL   86 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred             CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCC
Confidence            345679999999999998621   1   22567887431    11 1          1234444322 235678999999


Q ss_pred             cCCCCeEEEEEEEeC
Q psy16863        813 EVADQAEWKCIATND  827 (1075)
Q Consensus       813 ~~~D~G~Y~C~A~N~  827 (1075)
                      +.+|+|.|.|.+...
T Consensus        87 ~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          87 KPEDSGTYNFRFEIS  101 (118)
T ss_dssp             CGGGCEEEEEEEECC
T ss_pred             ChhHCEEEEEEEEeC
Confidence            999999999999754

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00093  Score=55.36  Aligned_cols=68  Identities=15%  Similarity=0.194  Sum_probs=46.5

Q ss_pred             cCCeEEEEEEEecC-C-CCeEEEEECCEEeecCCc-EEEEEeeCc----EEEEEEccccCCCCeEEEEEEEeCCc
Q psy16863        762 VNEEFKFTVQVSIS-P-EPKVSWFRDDQQVVESDN-VKILKETLG----VCHLKIHALEVADQAEWKCIATNDFG  829 (1075)
Q Consensus       762 ~g~~~~l~C~v~g~-p-~p~v~W~k~g~~i~~~~~-~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~~G  829 (1075)
                      .+..+.|.|.+.|. | ...|+|++||+++..+.. .......++    .+.|.|..-.......|+|.+.....
T Consensus        19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (102)
T d1q0xl2          19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGH   93 (102)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTE
T ss_pred             CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCc
Confidence            35678999999985 4 358999999998753211 011112222    34678877777778999999998643

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.09  E-value=0.00062  Score=57.73  Aligned_cols=72  Identities=15%  Similarity=0.176  Sum_probs=48.2

Q ss_pred             eecCceeeccCCeEEEEEEEecCCCcEEEEEE--CCEec------CC----------CCcEEEEEcCCEEEEEEcccCCC
Q psy16863        354 RRLHDIAVKVGTRARLLVEIRSPTEIKIHWYR--NDRKL------EE----------NKIYRTQHDGNFYFIDLSSVSLF  415 (1075)
Q Consensus       354 ~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k--~g~~l------~~----------~~~~~~~~~g~~~~L~I~~v~~~  415 (1075)
                      ..|....+.+|++++|.|..+.. ...+.|||  .|+.+      ..          ..............|.|.++..+
T Consensus         4 Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (112)
T d2bnub1           4 QTPKFQVLKTGQSMTLQCAQDMN-HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPS   82 (112)
T ss_dssp             EECSEEEEETTCCEEEEEEESSC-CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGG
T ss_pred             ECCCeEEECCCCCEEEEEEEECC-ccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHH
Confidence            34566778999999999998543 56899998  22211      00          11111112233357999999999


Q ss_pred             CceeEEEEEEe
Q psy16863        416 DSGRWTCLAEN  426 (1075)
Q Consensus       416 d~G~Y~C~a~n  426 (1075)
                      |+|.|.|.+..
T Consensus        83 DsavYyCA~~~   93 (112)
T d2bnub1          83 QTSVYFCASSY   93 (112)
T ss_dssp             GCEEEEEEEEC
T ss_pred             HCEEEEEeecC
Confidence            99999998764

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.07  E-value=0.00035  Score=59.36  Aligned_cols=73  Identities=7%  Similarity=0.228  Sum_probs=48.5

Q ss_pred             cceeeeecCCeEEEEEEEecCCCCeEEEEEC--CEEe---e------------cCCcEEEEEeeCcEEEEEEccccCCCC
Q psy16863        755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQQV---V------------ESDNVKILKETLGVCHLKIHALEVADQ  817 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~~i---~------------~~~~~~~~~~~~~~~~L~I~~~~~~D~  817 (1075)
                      +....+.+|++++|.|.... -...+.|||-  |+.+   .            ...++.........+.|.|.+++++|+
T Consensus         5 P~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Ds   83 (112)
T d2cdeb1           5 PRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHT   83 (112)
T ss_dssp             CSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTC
T ss_pred             CCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccccccc
Confidence            34456889999999999764 3458999983  2211   0            011222222223356799999999999


Q ss_pred             eEEEEEEEeCC
Q psy16863        818 AEWKCIATNDF  828 (1075)
Q Consensus       818 G~Y~C~A~N~~  828 (1075)
                      |.|-|.+....
T Consensus        84 a~YyCA~~~~~   94 (112)
T d2cdeb1          84 SQYLCASSENI   94 (112)
T ss_dssp             SEEEEEEECSS
T ss_pred             ccEEEEEecCC
Confidence            99999887543

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.0017  Score=52.69  Aligned_cols=69  Identities=20%  Similarity=0.302  Sum_probs=48.0

Q ss_pred             cCCeEEEEEEEec-CCCCceEEEEeCCeEEecCCcEEEEEcCCceEE-EEEeeeeecCCceEEEEEECCCC
Q psy16863        564 IGTSAILECQVLV-PPWPRSIYWYNKEGVVEASDKYHIMADGLGGYS-IEINYLEAVDDGEWKCVATSSSG  632 (1075)
Q Consensus       564 ~G~~~~L~C~~~~-~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~-L~i~~~~~~d~G~Y~C~a~n~~g  632 (1075)
                      .|+.++|.|.+.| .|....|+|+++|..+..........++.+.+. .....+...+...|+|.+.+..-
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~sl   84 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSSL   84 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEETTC
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEECCC
Confidence            4789999999998 565679999999987754433344444444433 33444556677789999998753

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.07  E-value=0.00088  Score=56.04  Aligned_cols=81  Identities=15%  Similarity=0.145  Sum_probs=54.8

Q ss_pred             cccceeeccceeEEEEEecCCC--ceEEEE-ecCCCeeeEEecCCCcc-ccCCCeEEEeeCCeEEEEEcccCCCCCEEEE
Q psy16863        249 LHDIAVKVGTRARLLVEIRSPT--EIKCQF-DLNNTIPFSFRAQGDHP-IFGNRFRAINRDGRTELNIRRVRRDDGGRYS  324 (1075)
Q Consensus       249 ~~~~~v~~g~~~~l~c~~~~~~--~~~c~~-~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~  324 (1075)
                      |..+.+.+|++++|.|......  .+.|.- ..+..+.+.++...... -..+++.....+....|.|.+++++|+|.|.
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~Yy   85 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEE
Confidence            4567788999999999875422  233322 22333444444332221 1256788888888889999999999999999


Q ss_pred             EEEEe
Q psy16863        325 VTASN  329 (1075)
Q Consensus       325 C~a~n  329 (1075)
                      |.+..
T Consensus        86 CA~~~   90 (108)
T d1nfde1          86 CLSSY   90 (108)
T ss_dssp             EEEEE
T ss_pred             EEeec
Confidence            98754

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.06  E-value=0.0018  Score=53.79  Aligned_cols=73  Identities=15%  Similarity=0.284  Sum_probs=52.6

Q ss_pred             eecCceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEe------cCC-----------CCcEEEEEc--CCEEEEEEc
Q psy16863        354 RRLHDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRK------LEE-----------NKIYRTQHD--GNFYFIDLS  410 (1075)
Q Consensus       354 ~~~~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~------l~~-----------~~~~~~~~~--g~~~~L~I~  410 (1075)
                      .......+++|++++|.|.++|..  .--+.|+|.  |+.      |..           ..|+.+..+  .+...|.|.
T Consensus         6 ~~sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~   85 (122)
T d1vgeh1           6 EQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLS   85 (122)
T ss_dssp             EECCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EecCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeeccc
Confidence            344566789999999999998854  457899882  221      111           246666654  456679999


Q ss_pred             ccCCCCceeEEEEEEe
Q psy16863        411 SVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       411 ~v~~~d~G~Y~C~a~n  426 (1075)
                      +++.+|++.|.|....
T Consensus        86 ~L~~eDtA~YYCAr~~  101 (122)
T d1vgeh1          86 SLRPEDTAVYYCARDP  101 (122)
T ss_dssp             SCCGGGCEEEEEEEET
T ss_pred             ccCCCcceEEEEeecC
Confidence            9999999999997653

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00056  Score=58.70  Aligned_cols=69  Identities=16%  Similarity=0.185  Sum_probs=45.6

Q ss_pred             eeeecCCeEEEEEEEecCCCC---eEEEEECC--EE---ee----cC-------CcEEEEEeeCcEEEEEEccccCCCCe
Q psy16863        758 CQATVNEEFKFTVQVSISPEP---KVSWFRDD--QQ---VV----ES-------DNVKILKETLGVCHLKIHALEVADQA  818 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p~p---~v~W~k~g--~~---i~----~~-------~~~~~~~~~~~~~~L~I~~~~~~D~G  818 (1075)
                      ..+..|+.++|.|.....-.+   .+.|||..  +.   +.    .+       .++.....+...+.|.|.+++.+|+|
T Consensus         9 ~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   88 (118)
T d1i8lc_           9 VLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTG   88 (118)
T ss_dssp             EECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGGCE
T ss_pred             EEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCCCE
Confidence            447789999999998643333   58999842  21   10    00       11111122344778999999999999


Q ss_pred             EEEEEEEe
Q psy16863        819 EWKCIATN  826 (1075)
Q Consensus       819 ~Y~C~A~N  826 (1075)
                      .|.|.+..
T Consensus        89 ~YyCa~~~   96 (118)
T d1i8lc_          89 LYICKVEL   96 (118)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEeEec
Confidence            99998864

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=0.00048  Score=56.96  Aligned_cols=69  Identities=12%  Similarity=0.166  Sum_probs=44.5

Q ss_pred             ccCCeEEEEEEEec-CC-CcEEEEEECCEecCCCCcEEEEEcCCE---EEEEEcccCCCCceeEEEEEEeCCCce
Q psy16863        362 KVGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKIYRTQHDGNF---YFIDLSSVSLFDSGRWTCLAENAVGRS  431 (1075)
Q Consensus       362 ~~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~~~~~~~g~~---~~L~I~~v~~~d~G~Y~C~a~n~~g~~  431 (1075)
                      ..++.++|.|.+.| .| ...|+|.++|........-....+|..   +.|.|..-.. +.|.|+|.+.+.....
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w-~~~~ytC~V~H~~~~~   91 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTW-PSASVTCLVAHPKSST   91 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTT-TTSCCEEEEEEGGGTE
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhc-CCCeEEEEEEeCCCCe
Confidence            46789999999987 34 679999988864321111112344543   3566654333 4679999999876543

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00044  Score=56.46  Aligned_cols=68  Identities=18%  Similarity=0.211  Sum_probs=53.0

Q ss_pred             CCCeeeeecceEEecCCeEEEEEEEECCCCCeEEEEeCCEecc--------CCCEEEEEeCCCCCCCcEEEEEEEEe
Q psy16863        446 KAPFFTKELEAILTEQGTVSLECKVMGIPTPQLIWYKDNKKIK--------AGDIFALTANPKDPSSLGTYTCEAVN  514 (1075)
Q Consensus       446 ~~p~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~l~--------~~~~~~l~i~~~~~~d~G~Y~C~a~n  514 (1075)
                      .+|.+...+..++..|++|+|.|... .+...+.++|+|....        .+....+.|..+...|+|.|+|....
T Consensus         3 PkP~Lsa~Ps~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1           3 PKPTLWAEPGSVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             CCCEEEEESCSEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeECCCccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            35678878888899999999999964 4556889999886421        12345788999999999999998653

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=0.0013  Score=49.28  Aligned_cols=85  Identities=18%  Similarity=0.333  Sum_probs=57.1

Q ss_pred             eccceEeecCCeEEEEEEEec-CCCCceEEEEeCCeE----EecC-CcEEEE--EcCCceEEEEEeeeeecCCceEEEEE
Q psy16863        556 EVENVKAKIGTSAILECQVLV-PPWPRSIYWYNKEGV----VEAS-DKYHIM--ADGLGGYSIEINYLEAVDDGEWKCVA  627 (1075)
Q Consensus       556 ~~~~~~v~~G~~~~L~C~~~~-~p~p~~v~W~~~~~~----i~~~-~~~~~~--~~~~~~~~L~i~~~~~~d~G~Y~C~a  627 (1075)
                      ..+..++..|+.+.|+|.+.- ...| .++|-|-++.    +.-. +.++-.  .+....+.|.+..+-.+|.|.|+|.|
T Consensus         9 R~S~hs~~~G~~f~leCPVkYC~~RP-nVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSa   87 (104)
T d1xaua_           9 RNSKHSAWTGELFKIECPVKYCVHRP-NVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCST   87 (104)
T ss_dssp             TTEEEEECTTSCEEEEEEEECSSSCC-CEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEE
T ss_pred             ecceeeEecCCceEecCcchhhcCCC-CcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEec
Confidence            344567889999999999974 2334 7999986653    2212 222222  22344578999999999999999999


Q ss_pred             ECCCCceeeeeEEE
Q psy16863        628 TSSSGVKQFSAAYV  641 (1075)
Q Consensus       628 ~n~~g~~~~~~~~l  641 (1075)
                      .-..+..++-+..+
T Consensus        88 nf~s~vieSHSvti  101 (104)
T d1xaua_          88 NFNSQVINSHSVTI  101 (104)
T ss_dssp             EETTEEEECCCEEE
T ss_pred             CCChhheecceEEE
Confidence            76666555433333

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.03  E-value=0.0015  Score=53.80  Aligned_cols=69  Identities=20%  Similarity=0.341  Sum_probs=50.5

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEe------cC-C----------CCcEEEEEc--CCEEEEEEcccC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRK------LE-E----------NKIYRTQHD--GNFYFIDLSSVS  413 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~------l~-~----------~~~~~~~~~--g~~~~L~I~~v~  413 (1075)
                      ....+++|++++|.|.++|..  .-.+.|+|.  |+.      |. .          ..|+.+..+  .+...|.|.+++
T Consensus         8 G~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~   87 (117)
T d1jpth1           8 GGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLR   87 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccC
Confidence            456788999999999999854  558899873  221      11 1          245566544  466789999999


Q ss_pred             CCCceeEEEEEE
Q psy16863        414 LFDSGRWTCLAE  425 (1075)
Q Consensus       414 ~~d~G~Y~C~a~  425 (1075)
                      .+|++.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (117)
T d1jpth1          88 AEDTAVYYCARD   99 (117)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCCceEEEEeec
Confidence            999999999653

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.02  E-value=0.0022  Score=53.31  Aligned_cols=71  Identities=17%  Similarity=0.314  Sum_probs=51.3

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEec------C--------C--CCcEEEEEc--CCEEEEEEcccCC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRKL------E--------E--NKIYRTQHD--GNFYFIDLSSVSL  414 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~l------~--------~--~~~~~~~~~--g~~~~L~I~~v~~  414 (1075)
                      -...+++|++++|.|.++|..  ...+.|+|.  |+.+      .        +  ..|+.+..+  .+...|.|.+++.
T Consensus         7 g~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~   86 (119)
T d1kxvc_           7 GGGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKP   86 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCG
T ss_pred             CCceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCc
Confidence            345678999999999998854  457899883  2211      1        1  136666654  4567899999999


Q ss_pred             CCceeEEEEEEeC
Q psy16863        415 FDSGRWTCLAENA  427 (1075)
Q Consensus       415 ~d~G~Y~C~a~n~  427 (1075)
                      +|++.|.|.....
T Consensus        87 eDtA~YYCAr~~~   99 (119)
T d1kxvc_          87 DDTAMYYCKPSLR   99 (119)
T ss_dssp             GGCEEEEEEEEES
T ss_pred             CCcceEeeeeccc
Confidence            9999999976543

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.02  E-value=0.002  Score=53.34  Aligned_cols=69  Identities=16%  Similarity=0.271  Sum_probs=49.5

Q ss_pred             cCceeeccCCeEEEEEEEecCC--CcEEEEEE--CCEec------C---------C--CCcEEEEEc--CCEEEEEEccc
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPT--EIKIHWYR--NDRKL------E---------E--NKIYRTQHD--GNFYFIDLSSV  412 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k--~g~~l------~---------~--~~~~~~~~~--g~~~~L~I~~v  412 (1075)
                      .....+++|++++|.|.++|..  ..-+.|+|  .|+.+      .         +  ..|+.+..+  .+...|.|.++
T Consensus         7 sg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L   86 (117)
T d1mfah1           7 SGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSL   86 (117)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeeccc
Confidence            3456778999999999998853  45788887  23211      1         1  125556544  45668999999


Q ss_pred             CCCCceeEEEEE
Q psy16863        413 SLFDSGRWTCLA  424 (1075)
Q Consensus       413 ~~~d~G~Y~C~a  424 (1075)
                      +.+|++.|.|..
T Consensus        87 ~~eDtAvYYCAr   98 (117)
T d1mfah1          87 TSEDSAVYYCTR   98 (117)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CCCcceEEEEec
Confidence            999999999964

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.01  E-value=0.00045  Score=58.68  Aligned_cols=75  Identities=12%  Similarity=0.182  Sum_probs=50.8

Q ss_pred             EeccceeeeecCCeEEEEEEEecCCCCeEEEEECC--E---Ee---e---------cCCcEEEEEeeCcEEEEEEccccC
Q psy16863        752 IEGLKSCQATVNEEFKFTVQVSISPEPKVSWFRDD--Q---QV---V---------ESDNVKILKETLGVCHLKIHALEV  814 (1075)
Q Consensus       752 ~~~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~g--~---~i---~---------~~~~~~~~~~~~~~~~L~I~~~~~  814 (1075)
                      ...+....+.+|++++|.|..... ...+.|||-.  +   -|   .         ...++.........+.|+|.++++
T Consensus         5 tQ~P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   83 (113)
T d1nfdb1           5 VQSPRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALEL   83 (113)
T ss_dssp             EEECSEEEEETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCG
T ss_pred             EEcCCEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCc
Confidence            344455668899999999986643 4589999842  1   11   0         112333333333457899999999


Q ss_pred             CCCeEEEEEEEeC
Q psy16863        815 ADQAEWKCIATND  827 (1075)
Q Consensus       815 ~D~G~Y~C~A~N~  827 (1075)
                      +|+|.|-|.+...
T Consensus        84 ~Dsa~YyCa~~~~   96 (113)
T d1nfdb1          84 EDSAMYFCASSLR   96 (113)
T ss_dssp             GGCEEECEEEESS
T ss_pred             CCceeEEEEeecC
Confidence            9999999987643

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00065  Score=56.39  Aligned_cols=70  Identities=11%  Similarity=0.149  Sum_probs=44.6

Q ss_pred             cCCeEEEEEEEec-CCCCceEEEEeCCeEEecCCcEEEEEcCCceE----EEEEeeeeecCCceEEEEEECCCCc
Q psy16863        564 IGTSAILECQVLV-PPWPRSIYWYNKEGVVEASDKYHIMADGLGGY----SIEINYLEAVDDGEWKCVATSSSGV  633 (1075)
Q Consensus       564 ~G~~~~L~C~~~~-~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~g~  633 (1075)
                      .++.++|.|.+.+ .|....++|+++|.............++.+.|    .|.|..-.....-.|+|.+.+....
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~l~   92 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH   92 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCCCC
Confidence            4678999999998 46667999999998754221111112222223    3566554445556799999997543

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.00  E-value=0.0021  Score=53.83  Aligned_cols=68  Identities=15%  Similarity=0.249  Sum_probs=48.8

Q ss_pred             ceeeccCCeEEEEEEEecCC----CcEEEEEEC--CEec--------------CC--CCcEEEEEc--CCEEEEEEcccC
Q psy16863        358 DIAVKVGTRARLLVEIRSPT----EIKIHWYRN--DRKL--------------EE--NKIYRTQHD--GNFYFIDLSSVS  413 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~~g~p----~~~v~W~k~--g~~l--------------~~--~~~~~~~~~--g~~~~L~I~~v~  413 (1075)
                      ...+++|++++|.|.++|..    ...+.|||.  |+.+              .+  ..|+.+..+  .+...|+|.+++
T Consensus         9 ~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~   88 (120)
T d2agjh1           9 PTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLD   88 (120)
T ss_dssp             CSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCC
T ss_pred             CeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeee
Confidence            45678899999999998742    347889983  3221              00  245666543  356789999999


Q ss_pred             CCCceeEEEEEE
Q psy16863        414 LFDSGRWTCLAE  425 (1075)
Q Consensus       414 ~~d~G~Y~C~a~  425 (1075)
                      .+|++.|.|...
T Consensus        89 ~eDsAvYyCAr~  100 (120)
T d2agjh1          89 PVDTATYYCART  100 (120)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             eccceEEeeEec
Confidence            999999999754

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.98  E-value=1.8e-05  Score=65.13  Aligned_cols=72  Identities=18%  Similarity=0.322  Sum_probs=49.7

Q ss_pred             eeeecCCeEEEEEEEecCCCCeEEEEEC--CEEee------------cCCcEEEEEe-eCcEEEEEEccccCCCCeEEEE
Q psy16863        758 CQATVNEEFKFTVQVSISPEPKVSWFRD--DQQVV------------ESDNVKILKE-TLGVCHLKIHALEVADQAEWKC  822 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~~i~------------~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C  822 (1075)
                      ..|.+|++++|+|..+. ....+.|||-  |+.+.            ...++.+..+ ....+.|.|.+++++|+|.|.|
T Consensus         3 lsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   81 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFC   81 (96)
T ss_dssp             CCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEE
T ss_pred             ceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeE
Confidence            45789999999998874 4458999982  32111            1233443322 2235679999999999999999


Q ss_pred             EEEeCCce
Q psy16863        823 IATNDFGQ  830 (1075)
Q Consensus       823 ~A~N~~G~  830 (1075)
                      .+....|.
T Consensus        82 A~~~~~g~   89 (96)
T d1ymmd1          82 ATDTTSGT   89 (96)
T ss_dssp             EEEETTSC
T ss_pred             eEecCCCC
Confidence            98766553

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00097  Score=55.51  Aligned_cols=70  Identities=17%  Similarity=0.248  Sum_probs=46.1

Q ss_pred             ecCCeEEEEEEEec-CCCCceEEEEeCCeEEecCCcEE--EEEcCCceE----EEEEeeeeecCCceEEEEEECCCC
Q psy16863        563 KIGTSAILECQVLV-PPWPRSIYWYNKEGVVEASDKYH--IMADGLGGY----SIEINYLEAVDDGEWKCVATSSSG  632 (1075)
Q Consensus       563 ~~G~~~~L~C~~~~-~p~p~~v~W~~~~~~i~~~~~~~--~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~g  632 (1075)
                      ..++.++|.|.+.+ .|....|.|+++|..+.......  ...++.+.|    .|+|..-.......|+|.+.+...
T Consensus        17 ~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l   93 (105)
T d1fp5a2          17 GSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAA   93 (105)
T ss_dssp             SSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTS
T ss_pred             hcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCC
Confidence            45678999999988 45556999999998765432111  122222333    466665555566779999998654

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.98  E-value=0.0029  Score=52.80  Aligned_cols=69  Identities=16%  Similarity=0.269  Sum_probs=50.1

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEec------CC-----------CCcEEEEE--cCCEEEEEEcccC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRKL------EE-----------NKIYRTQH--DGNFYFIDLSSVS  413 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~l------~~-----------~~~~~~~~--~g~~~~L~I~~v~  413 (1075)
                      ....+++|++++|.|.++|..  ...+.|+|.  |+.+      ..           ..|+.+..  ..+...|+|.+++
T Consensus         8 g~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~   87 (120)
T d1pg7x1           8 GPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLT   87 (120)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccC
Confidence            345688999999999998754  457899882  3221      11           23565554  3456789999999


Q ss_pred             CCCceeEEEEEE
Q psy16863        414 LFDSGRWTCLAE  425 (1075)
Q Consensus       414 ~~d~G~Y~C~a~  425 (1075)
                      .+|++.|.|...
T Consensus        88 ~eDtA~YYCAr~   99 (120)
T d1pg7x1          88 SNDSAVYYCARE   99 (120)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEeeec
Confidence            999999999864

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.97  E-value=0.00053  Score=58.17  Aligned_cols=75  Identities=16%  Similarity=0.299  Sum_probs=49.7

Q ss_pred             eecCceeeccCCeEEEEEEEecCCCcEEEEEECC--Eec-------CCC--------CcEEEE-EcCCEEEEEEcccCCC
Q psy16863        354 RRLHDIAVKVGTRARLLVEIRSPTEIKIHWYRND--RKL-------EEN--------KIYRTQ-HDGNFYFIDLSSVSLF  415 (1075)
Q Consensus       354 ~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g--~~l-------~~~--------~~~~~~-~~g~~~~L~I~~v~~~  415 (1075)
                      ..|..+.+.+|++++|.|.... ....+.|||-.  +.+       ..+        .+.... .+.....|.|.++..+
T Consensus         3 QsP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   81 (112)
T d2cdeb1           3 QTPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPS   81 (112)
T ss_dssp             EECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTT
T ss_pred             ECCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccccc
Confidence            3455678899999999999743 34689999832  211       000        111111 2233457999999999


Q ss_pred             CceeEEEEEEeCCC
Q psy16863        416 DSGRWTCLAENAVG  429 (1075)
Q Consensus       416 d~G~Y~C~a~n~~g  429 (1075)
                      |+|.|.|.+....+
T Consensus        82 Dsa~YyCA~~~~~~   95 (112)
T d2cdeb1          82 HTSQYLCASSENIG   95 (112)
T ss_dssp             TCSEEEEEEECSSS
T ss_pred             ccccEEEEEecCCC
Confidence            99999998875443

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.97  E-value=0.002  Score=53.30  Aligned_cols=70  Identities=19%  Similarity=0.271  Sum_probs=50.7

Q ss_pred             cCceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEe------cC-C----------CCcEEEEEc--CCEEEEEEccc
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRK------LE-E----------NKIYRTQHD--GNFYFIDLSSV  412 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~------l~-~----------~~~~~~~~~--g~~~~L~I~~v  412 (1075)
                      .....+++|++++|.|.++|..  .-.+.|+|.  |+.      |. .          ..|+.+..+  .+...|.|.++
T Consensus         6 sg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL   85 (117)
T d1um5h1           6 SGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSL   85 (117)
T ss_dssp             CCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeeccccc
Confidence            3456788999999999998754  458899883  221      11 1          135566543  45667999999


Q ss_pred             CCCCceeEEEEEE
Q psy16863        413 SLFDSGRWTCLAE  425 (1075)
Q Consensus       413 ~~~d~G~Y~C~a~  425 (1075)
                      +.+|++.|.|...
T Consensus        86 ~~eDtAvYYCAr~   98 (117)
T d1um5h1          86 TSEDSAVYYCARS   98 (117)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEEeec
Confidence            9999999999753

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.96  E-value=0.0014  Score=54.72  Aligned_cols=69  Identities=13%  Similarity=0.252  Sum_probs=43.9

Q ss_pred             cCCeEEEEEEEec-CC-CcEEEEEECCEecCCCCcEEE----EEcCCEE---EEEEcccCCCCceeEEEEEEeCCCce
Q psy16863        363 VGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKIYRT----QHDGNFY---FIDLSSVSLFDSGRWTCLAENAVGRS  431 (1075)
Q Consensus       363 ~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~~~~----~~~g~~~---~L~I~~v~~~d~G~Y~C~a~n~~g~~  431 (1075)
                      .+..++|.|.+.| .| ...|+|++||..+........    ..+|...   .|.|..-.-.....|+|.+.+.....
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~~~   96 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS   96 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCCCC
Confidence            4678999999977 34 579999999998865421111    1234333   45554333223558999999875443

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.96  E-value=0.0016  Score=53.81  Aligned_cols=69  Identities=14%  Similarity=0.268  Sum_probs=49.8

Q ss_pred             cCceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEe------cCC-----------CCcEEEEEc--CCEEEEEEccc
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRK------LEE-----------NKIYRTQHD--GNFYFIDLSSV  412 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~------l~~-----------~~~~~~~~~--g~~~~L~I~~v  412 (1075)
                      .....+++|++++|.|.++|..  .-.+.|+|.  |+.      |..           ..|+.+..+  .+...|.|.++
T Consensus         7 sg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL   86 (118)
T d2jelh1           7 SGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARL   86 (118)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccccc
Confidence            3456688999999999998864  447899872  221      111           135555543  45678999999


Q ss_pred             CCCCceeEEEEE
Q psy16863        413 SLFDSGRWTCLA  424 (1075)
Q Consensus       413 ~~~d~G~Y~C~a  424 (1075)
                      +.+|++.|.|..
T Consensus        87 ~~eDTAvYYCAr   98 (118)
T d2jelh1          87 TSEDSAIYYCAR   98 (118)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccCcceeeeEEE
Confidence            999999999953

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.96  E-value=0.0018  Score=52.69  Aligned_cols=69  Identities=13%  Similarity=0.304  Sum_probs=50.3

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEe------cCC-------------CCcEEEEEc--CCEEEEEEcc
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRK------LEE-------------NKIYRTQHD--GNFYFIDLSS  411 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~------l~~-------------~~~~~~~~~--g~~~~L~I~~  411 (1075)
                      ....+++|++++|.|.++|..  ..-+.|+|.  |+.      |..             ..|+.+..+  .+...|.|.+
T Consensus         8 G~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~s   87 (109)
T d2ck0h1           8 GGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNN   87 (109)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccC
Confidence            456788999999999998854  447888872  221      111             136666654  4667899999


Q ss_pred             cCCCCceeEEEEEE
Q psy16863        412 VSLFDSGRWTCLAE  425 (1075)
Q Consensus       412 v~~~d~G~Y~C~a~  425 (1075)
                      ++.+|++.|.|.-.
T Consensus        88 L~~eDTAvYYCAr~  101 (109)
T d2ck0h1          88 LKTEDTGIYYCVRG  101 (109)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             CCHhHCEEEEEEEc
Confidence            99999999999753

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=96.96  E-value=0.0019  Score=52.37  Aligned_cols=65  Identities=12%  Similarity=0.236  Sum_probs=43.4

Q ss_pred             CCeEEEEEEEec-CC-CcEEEEEECCEecCCCCcE----EEEEcCCEEEEEEcccCCCCceeEEEEEEeCC
Q psy16863        364 GTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKIY----RTQHDGNFYFIDLSSVSLFDSGRWTCLAENAV  428 (1075)
Q Consensus       364 G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~~----~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~  428 (1075)
                      +..++|.|.+.| .| ...|+|++||..+......    ....++.........+..++...|+|.+.+..
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~ytC~V~H~~   85 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSG   85 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEEETT
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEEEEEEECC
Confidence            467899999988 33 6799999999988654322    11234444433333444556668999999874

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.96  E-value=0.0021  Score=53.54  Aligned_cols=70  Identities=13%  Similarity=0.322  Sum_probs=51.0

Q ss_pred             eeeecCCeEEEEEEEecC--CCCeEEEEEC--CE----Eeec-----------CCcEEEEEe-eCcEEEEEEccccCCCC
Q psy16863        758 CQATVNEEFKFTVQVSIS--PEPKVSWFRD--DQ----QVVE-----------SDNVKILKE-TLGVCHLKIHALEVADQ  817 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~--p~p~v~W~k~--g~----~i~~-----------~~~~~~~~~-~~~~~~L~I~~~~~~D~  817 (1075)
                      ..+.+|++++|.|..++.  ..-.+.|+|.  |+    .|..           .+|+.+..+ ..+...|+|.+++.+|+
T Consensus         5 ~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eDs   84 (110)
T d1u9ka_           5 YDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTDS   84 (110)
T ss_dssp             EEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             CcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCCC
Confidence            457899999999998863  4557899983  32    1111           135666543 34678999999999999


Q ss_pred             eEEEEEEEeC
Q psy16863        818 AEWKCIATND  827 (1075)
Q Consensus       818 G~Y~C~A~N~  827 (1075)
                      |.|.|...+.
T Consensus        85 a~YyCa~~~~   94 (110)
T d1u9ka_          85 GLYRCVIYHP   94 (110)
T ss_dssp             EEEEEEEECT
T ss_pred             EEEEEEEeCC
Confidence            9999987544

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=96.96  E-value=0.0031  Score=51.98  Aligned_cols=70  Identities=19%  Similarity=0.217  Sum_probs=51.1

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEec------C--------C--CCcEEEEEc--CCEEEEEEcccCC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRKL------E--------E--NKIYRTQHD--GNFYFIDLSSVSL  414 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~l------~--------~--~~~~~~~~~--g~~~~L~I~~v~~  414 (1075)
                      ....+++|++++|.|.++|..  ..-+.|+|.  |+.+      .        +  ..|+.+..+  .+...|.|.+++.
T Consensus         8 G~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~   87 (116)
T d7fabh1           8 GPGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTA   87 (116)
T ss_dssp             CCSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CCceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccccc
Confidence            345678999999999998853  558899982  3221      1        1  245666543  4567899999999


Q ss_pred             CCceeEEEEEEe
Q psy16863        415 FDSGRWTCLAEN  426 (1075)
Q Consensus       415 ~d~G~Y~C~a~n  426 (1075)
                      +|++.|.|....
T Consensus        88 eDtAvYyCAr~~   99 (116)
T d7fabh1          88 ADTAVYYCARNL   99 (116)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceEEEeeeec
Confidence            999999997643

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.95  E-value=0.0021  Score=53.12  Aligned_cols=70  Identities=21%  Similarity=0.378  Sum_probs=50.3

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEE--CCEec------C-----------CCCcEEEEEc--CCEEEEEEcccC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYR--NDRKL------E-----------ENKIYRTQHD--GNFYFIDLSSVS  413 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k--~g~~l------~-----------~~~~~~~~~~--g~~~~L~I~~v~  413 (1075)
                      ....+++|++++|.|.++|..  .-.+.|+|  .|+.+      .           -..|+.+..+  .+...|.|.+++
T Consensus         8 g~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~   87 (117)
T d1iqdb1           8 GAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLR   87 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccC
Confidence            345678899999999998853  45688988  22211      1           1245666654  456679999999


Q ss_pred             CCCceeEEEEEEe
Q psy16863        414 LFDSGRWTCLAEN  426 (1075)
Q Consensus       414 ~~d~G~Y~C~a~n  426 (1075)
                      .+|++.|.|....
T Consensus        88 ~eDtAvYYCA~~~  100 (117)
T d1iqdb1          88 SDDTAVYYCAVPD  100 (117)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             cCcceEEEEeEcC
Confidence            9999999998643

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=96.94  E-value=0.00096  Score=54.30  Aligned_cols=66  Identities=11%  Similarity=0.254  Sum_probs=43.9

Q ss_pred             cCCeEEEEEEEec-CC-CcEEEEEECCEecCCCCc--EEEEEcCCEEEEEEcccCCCCceeEEEEEEeCC
Q psy16863        363 VGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKI--YRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAV  428 (1075)
Q Consensus       363 ~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~--~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~  428 (1075)
                      .++.++|.|.+.| .| ...|+|++|+..+.....  .....+|.........+..+|...|+|.+.+.+
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~s   84 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVADGEAAGLSCRVKHSS   84 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEEGGGCTTEEEEEEEGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEeCccCCEEEEEEEeCC
Confidence            4668999999987 45 569999999988754321  223345554332223334456678999999875

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=96.94  E-value=0.0013  Score=53.98  Aligned_cols=77  Identities=17%  Similarity=0.201  Sum_probs=47.2

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecC-C-CCeEEEEECCEEeecCCc-EEEEEeeCc----EEEEEEccccCCCCeE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSIS-P-EPKVSWFRDDQQVVESDN-VKILKETLG----VCHLKIHALEVADQAE  819 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~-p-~p~v~W~k~g~~i~~~~~-~~~~~~~~~----~~~L~I~~~~~~D~G~  819 (1075)
                      .+|.+...+.. .+..|+..+|.|.+.|. | ...|+|+|||+++..+.. .....++++    .+.|.|.   ..+...
T Consensus         4 v~P~V~v~~~~-~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~   79 (101)
T d1fnga1           4 VAPEVTVLSRS-PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFL---PSTDDF   79 (101)
T ss_dssp             BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEEC---CCTTCC
T ss_pred             cCCeEEEeCCC-cccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEc---CCCCCE
Confidence            35554432211 24467888999999985 5 459999999998864311 111222333    2345554   355668


Q ss_pred             EEEEEEeC
Q psy16863        820 WKCIATND  827 (1075)
Q Consensus       820 Y~C~A~N~  827 (1075)
                      |+|.+.-.
T Consensus        80 ytC~V~H~   87 (101)
T d1fnga1          80 YDCEVDHW   87 (101)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEEC
Confidence            99999765

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.94  E-value=0.002  Score=53.38  Aligned_cols=67  Identities=12%  Similarity=0.233  Sum_probs=48.5

Q ss_pred             eeeecCCeEEEEEEEecCCC--CeEEEEEC--CEE------eec-----------CCcEEEEEee-CcEEEEEEccccCC
Q psy16863        758 CQATVNEEFKFTVQVSISPE--PKVSWFRD--DQQ------VVE-----------SDNVKILKET-LGVCHLKIHALEVA  815 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p~--p~v~W~k~--g~~------i~~-----------~~~~~~~~~~-~~~~~L~I~~~~~~  815 (1075)
                      ..+.+|++++|+|.++|..-  -.+.|+|-  |+-      |..           ..|+.+..+. ..+..|.|.+++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~e   89 (119)
T d1eapb1          10 ELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTSE   89 (119)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccCC
Confidence            34678999999999998753  36899873  221      221           1366666543 34678999999999


Q ss_pred             CCeEEEEEE
Q psy16863        816 DQAEWKCIA  824 (1075)
Q Consensus       816 D~G~Y~C~A  824 (1075)
                      |++.|.|..
T Consensus        90 DTAvYYCAr   98 (119)
T d1eapb1          90 DSAVYFCKR   98 (119)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEEE
Confidence            999999953

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.94  E-value=0.00072  Score=57.28  Aligned_cols=71  Identities=10%  Similarity=0.213  Sum_probs=47.5

Q ss_pred             cceeeeecCCeEEEEEEEecCCCCeEEEEEC--CEEee------c---------CCcEEEEEeeCcEEEEEEccccCCCC
Q psy16863        755 LKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQQVV------E---------SDNVKILKETLGVCHLKIHALEVADQ  817 (1075)
Q Consensus       755 ~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~~i~------~---------~~~~~~~~~~~~~~~L~I~~~~~~D~  817 (1075)
                      +....+.+|++++|.|..+. -...+.|||-  |+.+.      .         ..++.........+.|.|.+++++|+
T Consensus         6 P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   84 (112)
T d2bnub1           6 PKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQT   84 (112)
T ss_dssp             CSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGC
T ss_pred             CCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHC
Confidence            34456889999999999874 3568999982  22110      0         11222222223345799999999999


Q ss_pred             eEEEEEEEe
Q psy16863        818 AEWKCIATN  826 (1075)
Q Consensus       818 G~Y~C~A~N  826 (1075)
                      |.|-|.+..
T Consensus        85 avYyCA~~~   93 (112)
T d2bnub1          85 SVYFCASSY   93 (112)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEeecC
Confidence            999998763

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0013  Score=54.57  Aligned_cols=70  Identities=14%  Similarity=0.161  Sum_probs=45.4

Q ss_pred             ecCCeEEEEEEEec-CCCCceEEEEeCCeEEecCCcEEEEEcCCceE----EEEEeeeeecCCceEEEEEECCCC
Q psy16863        563 KIGTSAILECQVLV-PPWPRSIYWYNKEGVVEASDKYHIMADGLGGY----SIEINYLEAVDDGEWKCVATSSSG  632 (1075)
Q Consensus       563 ~~G~~~~L~C~~~~-~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~g  632 (1075)
                      ..+..++|.|.+.+ .|....|+|+++|..+...........+.+.+    .|.|..-.......|+|.+.+...
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGH   93 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTE
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCE
Confidence            34668999999998 56666899999998876432222111112222    355554444456779999998753

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.92  E-value=0.0027  Score=52.33  Aligned_cols=68  Identities=15%  Similarity=0.277  Sum_probs=49.7

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEE--CCEe------cC---------C--CCcEEEEEc--CCEEEEEEcccC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYR--NDRK------LE---------E--NKIYRTQHD--GNFYFIDLSSVS  413 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k--~g~~------l~---------~--~~~~~~~~~--g~~~~L~I~~v~  413 (1075)
                      ....+++|+++.|.|.++|..  .--+.|+|  .|+.      |.         +  ..|+.+..+  .+...|.|.+++
T Consensus         8 G~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~   87 (117)
T d1jnhb1           8 GAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLT   87 (117)
T ss_dssp             CCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccC
Confidence            345678999999999999854  45889988  2221      11         1  246666654  456679999999


Q ss_pred             CCCceeEEEEE
Q psy16863        414 LFDSGRWTCLA  424 (1075)
Q Consensus       414 ~~d~G~Y~C~a  424 (1075)
                      .+|++.|.|..
T Consensus        88 ~eDTAvYYCAr   98 (117)
T d1jnhb1          88 SEDSAVYSCSR   98 (117)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCcceEEEEee
Confidence            99999999965

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.92  E-value=0.0017  Score=53.56  Aligned_cols=67  Identities=12%  Similarity=0.301  Sum_probs=48.7

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEe------cCC-----------CCcEEEEEc--CCEEEEEEcccC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRK------LEE-----------NKIYRTQHD--GNFYFIDLSSVS  413 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~------l~~-----------~~~~~~~~~--g~~~~L~I~~v~  413 (1075)
                      ....+++|++++|.|.++|..  ...+.|+|.  |+.      |..           ..|+.+..+  .+...|+|.+++
T Consensus         8 g~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~   87 (118)
T d1nlbh1           8 GPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLK   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecc
Confidence            345678999999999998854  446889872  221      211           235566644  366789999999


Q ss_pred             CCCceeEEEE
Q psy16863        414 LFDSGRWTCL  423 (1075)
Q Consensus       414 ~~d~G~Y~C~  423 (1075)
                      .+|++.|.|.
T Consensus        88 ~eDtAvYYCA   97 (118)
T d1nlbh1          88 NEDTATYFCA   97 (118)
T ss_dssp             GGGCEEEEEE
T ss_pred             cCcceEEEEe
Confidence            9999999995

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.92  E-value=0.0018  Score=53.61  Aligned_cols=67  Identities=21%  Similarity=0.349  Sum_probs=47.8

Q ss_pred             ceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEec------C-C----------CCcEEEEEc--CCEEEEEEcccCC
Q psy16863        358 DIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRKL------E-E----------NKIYRTQHD--GNFYFIDLSSVSL  414 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~l------~-~----------~~~~~~~~~--g~~~~L~I~~v~~  414 (1075)
                      ...+++|++++|.|.++|..  ...+.|+|.  |+.+      . .          ..|+.+..+  .+...|.|.+++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~   88 (115)
T d1f3dh1           9 PELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTF   88 (115)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCc
Confidence            44578899999999998753  446889872  3221      1 1          135555543  4566799999999


Q ss_pred             CCceeEEEEE
Q psy16863        415 FDSGRWTCLA  424 (1075)
Q Consensus       415 ~d~G~Y~C~a  424 (1075)
                      +|++.|.|..
T Consensus        89 eDtAvYYCAr   98 (115)
T d1f3dh1          89 EDSAVYYCAN   98 (115)
T ss_dssp             GGCEEEEEEE
T ss_pred             CCcEEEEEec
Confidence            9999999953

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.91  E-value=0.0031  Score=52.38  Aligned_cols=68  Identities=15%  Similarity=0.271  Sum_probs=49.7

Q ss_pred             eeecCCeEEEEEEEecCCC--CeEEEEEC--CEEe------ec----------CCcEEEEEee-CcEEEEEEccccCCCC
Q psy16863        759 QATVNEEFKFTVQVSISPE--PKVSWFRD--DQQV------VE----------SDNVKILKET-LGVCHLKIHALEVADQ  817 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p~--p~v~W~k~--g~~i------~~----------~~~~~~~~~~-~~~~~L~I~~~~~~D~  817 (1075)
                      .+.+|++++|+|.++|...  -.+.|+|.  |+-+      ..          ..|+.+..+. .++..|.|++++.+|+
T Consensus        10 ~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eDt   89 (119)
T d1kxvc_          10 TVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDDT   89 (119)
T ss_dssp             EECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCCc
Confidence            4778999999999998653  35889873  2211      11          1467776553 3577899999999999


Q ss_pred             eEEEEEEEe
Q psy16863        818 AEWKCIATN  826 (1075)
Q Consensus       818 G~Y~C~A~N  826 (1075)
                      +.|-|.+.-
T Consensus        90 A~YYCAr~~   98 (119)
T d1kxvc_          90 AMYYCKPSL   98 (119)
T ss_dssp             EEEEEEEEE
T ss_pred             ceEeeeecc
Confidence            999997643

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=96.90  E-value=0.0021  Score=53.37  Aligned_cols=67  Identities=19%  Similarity=0.274  Sum_probs=49.2

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEec------CC----------CCcEEEEEc--CCEEEEEEcccCC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRKL------EE----------NKIYRTQHD--GNFYFIDLSSVSL  414 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~l------~~----------~~~~~~~~~--g~~~~L~I~~v~~  414 (1075)
                      ....+++|++++|.|.++|..  ..-+.|+|.  |+.+      ..          ..|+.+..+  .+...|.|.+++.
T Consensus         8 G~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~   87 (120)
T d1dn0b1           8 GAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTA   87 (120)
T ss_dssp             CCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CCcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccc
Confidence            345688999999999998854  447889883  2221      11          246666653  4567799999999


Q ss_pred             CCceeEEEE
Q psy16863        415 FDSGRWTCL  423 (1075)
Q Consensus       415 ~d~G~Y~C~  423 (1075)
                      +|++.|.|.
T Consensus        88 eDtA~YYCA   96 (120)
T d1dn0b1          88 ADTAVYYCA   96 (120)
T ss_dssp             GGCEEEEEE
T ss_pred             ccccEEEEE
Confidence            999999994

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.90  E-value=0.0015  Score=54.73  Aligned_cols=67  Identities=19%  Similarity=0.292  Sum_probs=47.5

Q ss_pred             eeecCCeEEEEEEEecCC----CCeEEEEEC--CEEee------c----------CCcEEEEEee-CcEEEEEEccccCC
Q psy16863        759 QATVNEEFKFTVQVSISP----EPKVSWFRD--DQQVV------E----------SDNVKILKET-LGVCHLKIHALEVA  815 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p----~p~v~W~k~--g~~i~------~----------~~~~~~~~~~-~~~~~L~I~~~~~~  815 (1075)
                      .+.+|++++|+|.++|..    ...+.|+|.  |+.+.      .          ..|+.+..+. .....|.|.+++++
T Consensus        11 ~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~e   90 (120)
T d2agjh1          11 LVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPV   90 (120)
T ss_dssp             BCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGG
T ss_pred             eECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeec
Confidence            367799999999998753    246889973  32111      0          2356665432 34678999999999


Q ss_pred             CCeEEEEEEE
Q psy16863        816 DQAEWKCIAT  825 (1075)
Q Consensus       816 D~G~Y~C~A~  825 (1075)
                      |++.|-|...
T Consensus        91 DsAvYyCAr~  100 (120)
T d2agjh1          91 DTATYYCART  100 (120)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEeeEec
Confidence            9999999654

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.90  E-value=0.00085  Score=55.54  Aligned_cols=70  Identities=10%  Similarity=0.173  Sum_probs=40.9

Q ss_pred             ccCCeEEEEEEEec-C-CCcEEEEEECCEecCCCCcEEEEEcCCE---EEEEEcccCCCCceeEEEEEEeCCCcee
Q psy16863        362 KVGTRARLLVEIRS-P-TEIKIHWYRNDRKLEENKIYRTQHDGNF---YFIDLSSVSLFDSGRWTCLAENAVGRSH  432 (1075)
Q Consensus       362 ~~G~~v~l~C~~~g-~-p~~~v~W~k~g~~l~~~~~~~~~~~g~~---~~L~I~~v~~~d~G~Y~C~a~n~~g~~~  432 (1075)
                      ..++.++|.|.+.| . ....|+|.+++.............+|..   +.|.|..-.- +.+.|+|.+.+..+...
T Consensus        18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~ys~~S~L~v~~~~w-~~~~ytC~V~H~~~~~~   92 (102)
T d1mjuh2          18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTW-PSQSITCNVAHPASSTK   92 (102)
T ss_dssp             ----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTT-TTSCCEEEEEEGGGTEE
T ss_pred             cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccccCCCCEEEEEEEEEehhHc-CCceEEEEEEECCCCEE
Confidence            45788999999988 3 3679999877743211111112344433   3566555433 36789999999765443

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.89  E-value=0.0021  Score=52.97  Aligned_cols=68  Identities=15%  Similarity=0.239  Sum_probs=49.8

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEec------C--------C--CCcEEEEEc--CCEEEEEEcccCC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRKL------E--------E--NKIYRTQHD--GNFYFIDLSSVSL  414 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~l------~--------~--~~~~~~~~~--g~~~~L~I~~v~~  414 (1075)
                      ....+++|++++|.|.++|..  ..-+.|+|.  |+.+      .        +  ..|+.+..+  .+...|.|.+++.
T Consensus         8 G~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~   87 (117)
T d1c5db1           8 GPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQT   87 (117)
T ss_dssp             CCSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCG
T ss_pred             CCceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeecccccccc
Confidence            445688999999999998854  357889872  3222      1        1  236666654  4567899999999


Q ss_pred             CCceeEEEEE
Q psy16863        415 FDSGRWTCLA  424 (1075)
Q Consensus       415 ~d~G~Y~C~a  424 (1075)
                      +|++.|.|..
T Consensus        88 eDtAvYYCAr   97 (117)
T d1c5db1          88 EDTAIYFCTR   97 (117)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEEec
Confidence            9999999964

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.89  E-value=0.0017  Score=54.14  Aligned_cols=83  Identities=12%  Similarity=0.136  Sum_probs=51.8

Q ss_pred             CCeeee-ecCceeeccCCeEEEEEEEec-CC-CcEEEEEECCEecCCCCcE--EEEEcCCEEEEEEcccCCCCce-eEEE
Q psy16863        349 APAFIR-RLHDIAVKVGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKIY--RTQHDGNFYFIDLSSVSLFDSG-RWTC  422 (1075)
Q Consensus       349 ~p~~~~-~~~~~~v~~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~~--~~~~~g~~~~L~I~~v~~~d~G-~Y~C  422 (1075)
                      +|.+.. .+....+..+..++|.|.+.+ .| ...|+|++||..+......  ....+|.........+..++-| .|+|
T Consensus         8 ~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w~~~ytC   87 (107)
T d1hxmb2           8 SPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSLDKEHRC   87 (107)
T ss_dssp             SCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGGGSCEEE
T ss_pred             CCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccCCCeEEE
Confidence            444432 334445677889999999977 34 5699999999877543221  1234454433233334445534 7999


Q ss_pred             EEEeCCCce
Q psy16863        423 LAENAVGRS  431 (1075)
Q Consensus       423 ~a~n~~g~~  431 (1075)
                      .+.+.....
T Consensus        88 ~V~H~s~~~   96 (107)
T d1hxmb2          88 IVRHENNKN   96 (107)
T ss_dssp             EEEETTSGG
T ss_pred             EEEECCCCC
Confidence            999986554

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.89  E-value=0.00088  Score=55.33  Aligned_cols=66  Identities=17%  Similarity=0.275  Sum_probs=42.8

Q ss_pred             cCCeEEEEEEEec-CC-CcEEEEEECCEecCCCC--cEEEEEcCCEE---EEEEcccCCCCceeEEEEEEeCC
Q psy16863        363 VGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENK--IYRTQHDGNFY---FIDLSSVSLFDSGRWTCLAENAV  428 (1075)
Q Consensus       363 ~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~--~~~~~~~g~~~---~L~I~~v~~~d~G~Y~C~a~n~~  428 (1075)
                      ..+.++|.|.+.| .| ...|+|++||..+....  ......+|...   .|.|..-.-.....|+|++.+..
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            4568999999988 34 67999999998875422  11222344432   45554332234558999999874

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.001  Score=55.83  Aligned_cols=75  Identities=8%  Similarity=0.151  Sum_probs=49.1

Q ss_pred             ccceEeecCCeEEEEEEEecC-CCCceEEEEeCCeEEecCCcEEE---E--EcCCceE----EEEEeeeeecCCceEEEE
Q psy16863        557 VENVKAKIGTSAILECQVLVP-PWPRSIYWYNKEGVVEASDKYHI---M--ADGLGGY----SIEINYLEAVDDGEWKCV  626 (1075)
Q Consensus       557 ~~~~~v~~G~~~~L~C~~~~~-p~p~~v~W~~~~~~i~~~~~~~~---~--~~~~~~~----~L~i~~~~~~d~G~Y~C~  626 (1075)
                      +....+..|+.++|.|.+.+. |....|+|+++|..+..+.....   .  .++.+.|    .|+|..-.......|+|.
T Consensus        12 p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~   91 (108)
T d1ow0a2          12 PPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCM   91 (108)
T ss_dssp             CCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEE
T ss_pred             CCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEE
Confidence            333445668899999999985 55568999999988765432211   0  1122222    456655555567789999


Q ss_pred             EECCC
Q psy16863        627 ATSSS  631 (1075)
Q Consensus       627 a~n~~  631 (1075)
                      +.+..
T Consensus        92 V~H~s   96 (108)
T d1ow0a2          92 VGHEA   96 (108)
T ss_dssp             EECTT
T ss_pred             EEeCC
Confidence            99865

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00078  Score=56.63  Aligned_cols=80  Identities=11%  Similarity=0.271  Sum_probs=50.4

Q ss_pred             CCeee-eecCceeeccCCeEEEEEEEec-CC-CcEEEEEECCEecCCCCcEE----E---EEcCCE---EEEEEcccCCC
Q psy16863        349 APAFI-RRLHDIAVKVGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKIYR----T---QHDGNF---YFIDLSSVSLF  415 (1075)
Q Consensus       349 ~p~~~-~~~~~~~v~~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~~~----~---~~~g~~---~~L~I~~v~~~  415 (1075)
                      +|.+. ..+....+..|+.++|.|.+.+ .| ...|+|++||.++.......    .   ..+|..   +.|.|..-.-.
T Consensus         4 ~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~   83 (108)
T d1ow0a2           4 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWK   83 (108)
T ss_dssp             CCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHH
T ss_pred             CCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhC
Confidence            45443 2344455678899999999977 34 56999999999886543221    1   123333   24555433322


Q ss_pred             CceeEEEEEEeCC
Q psy16863        416 DSGRWTCLAENAV  428 (1075)
Q Consensus       416 d~G~Y~C~a~n~~  428 (1075)
                      ....|+|.+.+..
T Consensus        84 ~g~~ytC~V~H~s   96 (108)
T d1ow0a2          84 KGDTFSCMVGHEA   96 (108)
T ss_dssp             HTCCEEEEEECTT
T ss_pred             CCCEEEEEEEeCC
Confidence            3459999999875

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.88  E-value=0.0029  Score=52.17  Aligned_cols=69  Identities=20%  Similarity=0.233  Sum_probs=49.5

Q ss_pred             eeeecCCeEEEEEEEecCC--CCeEEEEEC--CEE------eec-----------CCcEEEEEee-CcEEEEEEccccCC
Q psy16863        758 CQATVNEEFKFTVQVSISP--EPKVSWFRD--DQQ------VVE-----------SDNVKILKET-LGVCHLKIHALEVA  815 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~------i~~-----------~~~~~~~~~~-~~~~~L~I~~~~~~  815 (1075)
                      ..+.+|++++|+|.++|..  .-.+.|+|.  |+-      |..           ..|+.+..+. ..+..|.|++++.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~e   89 (118)
T d1nlbh1          10 ELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKNE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecccC
Confidence            3478999999999999865  346889873  321      211           2366666543 35678999999999


Q ss_pred             CCeEEEEEEEeC
Q psy16863        816 DQAEWKCIATND  827 (1075)
Q Consensus       816 D~G~Y~C~A~N~  827 (1075)
                      |++.|.| |...
T Consensus        90 DtAvYYC-Ar~~  100 (118)
T d1nlbh1          90 DTATYFC-ARFL  100 (118)
T ss_dssp             GCEEEEE-EEEC
T ss_pred             cceEEEE-eeeC
Confidence            9999999 4443

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=96.86  E-value=0.0016  Score=53.05  Aligned_cols=67  Identities=15%  Similarity=0.195  Sum_probs=45.1

Q ss_pred             eecCCeEEEEEEEecC-C-CCeEEEEECCEEeecCC-cEEEEEeeCcEE----EEEEccccCCCCeEEEEEEEeCCc
Q psy16863        760 ATVNEEFKFTVQVSIS-P-EPKVSWFRDDQQVVESD-NVKILKETLGVC----HLKIHALEVADQAEWKCIATNDFG  829 (1075)
Q Consensus       760 ~~~g~~~~l~C~v~g~-p-~p~v~W~k~g~~i~~~~-~~~~~~~~~~~~----~L~I~~~~~~D~G~Y~C~A~N~~G  829 (1075)
                      ...++.++|.|.+.|. | ...|+|++||+.+..+. ......+.++++    .|.|   ..++...|+|.+.....
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v---~~~~~~~ytC~V~H~sl   87 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLAL---TPSYGDTYTCVVEHIGA   87 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEE---CCCTTCCEEEEEECTTS
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEc---CCCCCCEEEEEEEeCCC
Confidence            4567889999999985 4 67999999999886432 112223333332    3444   45667789999987643

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.85  E-value=0.0037  Score=51.65  Aligned_cols=71  Identities=17%  Similarity=0.256  Sum_probs=50.9

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEec------CC-----------CCcEEEEEc--CCEEEEEEcccC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRKL------EE-----------NKIYRTQHD--GNFYFIDLSSVS  413 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~l------~~-----------~~~~~~~~~--g~~~~L~I~~v~  413 (1075)
                      ....+++|++++|.|.++|..  .-.+.|+|.  |+.|      ..           ..|+.+..+  .+...|.|.+++
T Consensus         8 G~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~   87 (118)
T d2fbjh1           8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccC
Confidence            345788999999999998854  346889872  3211      11           235566654  455679999999


Q ss_pred             CCCceeEEEEEEeC
Q psy16863        414 LFDSGRWTCLAENA  427 (1075)
Q Consensus       414 ~~d~G~Y~C~a~n~  427 (1075)
                      .+|++.|.|.....
T Consensus        88 ~eDtAvYYCAr~~~  101 (118)
T d2fbjh1          88 SEDTALYYCARLHY  101 (118)
T ss_dssp             GGGCEEEEEEEEET
T ss_pred             CCcceEEEeeEecC
Confidence            99999999986554

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00079  Score=55.83  Aligned_cols=67  Identities=15%  Similarity=0.198  Sum_probs=44.9

Q ss_pred             cCCeEEEEEEEec-CC-CCeEEEEECCEEeecCCcE-EEEEeeCc----EEEEEEccccCCCCeEEEEEEEeCC
Q psy16863        762 VNEEFKFTVQVSI-SP-EPKVSWFRDDQQVVESDNV-KILKETLG----VCHLKIHALEVADQAEWKCIATNDF  828 (1075)
Q Consensus       762 ~g~~~~l~C~v~g-~p-~p~v~W~k~g~~i~~~~~~-~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~~  828 (1075)
                      .++.+.|.|.+.| .| ...|+|++||+.+..+... ......++    .+.|.|..........|+|.+....
T Consensus        19 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1rzfl2          19 QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG   92 (102)
T ss_dssp             HTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETT
T ss_pred             cCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            4677999999998 45 3489999999987643211 11112222    3467777666555678999999864

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=96.83  E-value=0.0026  Score=52.45  Aligned_cols=69  Identities=14%  Similarity=0.245  Sum_probs=50.1

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEec------C--------C--CCcEEEEE--cCCEEEEEEcccCC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRKL------E--------E--NKIYRTQH--DGNFYFIDLSSVSL  414 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~l------~--------~--~~~~~~~~--~g~~~~L~I~~v~~  414 (1075)
                      ....+++|++++|.|.++|..  ...+.|+|.  |+.+      .        +  ..|+.+..  ..+...|.|.+++.
T Consensus         8 G~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~   87 (116)
T d1a2yb_           8 GPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHT   87 (116)
T ss_dssp             CCSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCG
T ss_pred             CCceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeee
Confidence            345678999999999998854  458899883  2221      1        1  13555554  44667899999999


Q ss_pred             CCceeEEEEEE
Q psy16863        415 FDSGRWTCLAE  425 (1075)
Q Consensus       415 ~d~G~Y~C~a~  425 (1075)
                      +|++.|.|.-.
T Consensus        88 eDTAvYYCAr~   98 (116)
T d1a2yb_          88 DDTARYYCARE   98 (116)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEEEEEe
Confidence            99999999754

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.0013  Score=54.54  Aligned_cols=68  Identities=13%  Similarity=0.265  Sum_probs=43.5

Q ss_pred             cCCeEEEEEEEec-CC-CcEEEEEECCEecCCCC--cEEEEEcCCEE---EEEEcccCCCCceeEEEEEEeCCCc
Q psy16863        363 VGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENK--IYRTQHDGNFY---FIDLSSVSLFDSGRWTCLAENAVGR  430 (1075)
Q Consensus       363 ~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~--~~~~~~~g~~~---~L~I~~v~~~d~G~Y~C~a~n~~g~  430 (1075)
                      .++.++|.|.+.| .| ...|+|++||.......  ......+|...   .|.|..-.....-.|+|.+.+....
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~l~   92 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH   92 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCCCC
Confidence            4778999999987 34 67999999998765321  11122344443   4555443223334799999997543

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.82  E-value=0.0037  Score=52.42  Aligned_cols=71  Identities=14%  Similarity=0.243  Sum_probs=51.4

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEec---------------CC--CCcEEEEEc--CCEEEEEEcccC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRKL---------------EE--NKIYRTQHD--GNFYFIDLSSVS  413 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~l---------------~~--~~~~~~~~~--g~~~~L~I~~v~  413 (1075)
                      ....+++|++++|.|.++|..  ...+.|+|.  |+.+               .+  ..|+.+..+  .+...|.|.+++
T Consensus         8 G~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~   87 (128)
T d2nxyd1           8 GAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLR   87 (128)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeecc
Confidence            345678999999999999854  446788762  2211               11  246666655  466789999999


Q ss_pred             CCCceeEEEEEEeC
Q psy16863        414 LFDSGRWTCLAENA  427 (1075)
Q Consensus       414 ~~d~G~Y~C~a~n~  427 (1075)
                      .+|++.|.|.....
T Consensus        88 ~eDTA~YYCAr~~~  101 (128)
T d2nxyd1          88 SDDTAVYFCAGVYE  101 (128)
T ss_dssp             GGGCEEEEEEEEEC
T ss_pred             ccCceEEEEeEEec
Confidence            99999999997543

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.82  E-value=0.0024  Score=52.35  Aligned_cols=69  Identities=20%  Similarity=0.252  Sum_probs=49.9

Q ss_pred             cCceeeccCCeEEEEEEEecCC--CcEEEEEE--CCEe------cC-C----------CCcEEEEEc--CCEEEEEEccc
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPT--EIKIHWYR--NDRK------LE-E----------NKIYRTQHD--GNFYFIDLSSV  412 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k--~g~~------l~-~----------~~~~~~~~~--g~~~~L~I~~v  412 (1075)
                      .....+++|++++|.|.++|..  ..-+.|+|  .|+.      |. .          ..|+.+..+  .+...|.|.++
T Consensus         7 sg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL   86 (116)
T d1mjuh1           7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL   86 (116)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEeccccc
Confidence            3456788999999999998854  45788987  2221      11 1          135666544  45678999999


Q ss_pred             CCCCceeEEEEE
Q psy16863        413 SLFDSGRWTCLA  424 (1075)
Q Consensus       413 ~~~d~G~Y~C~a  424 (1075)
                      +.+|++.|.|..
T Consensus        87 ~~eDtAvYYCAr   98 (116)
T d1mjuh1          87 TSDDSAVYYCAN   98 (116)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CCCCceEEEEcc
Confidence            999999999964

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.81  E-value=0.0025  Score=53.81  Aligned_cols=71  Identities=11%  Similarity=0.218  Sum_probs=47.8

Q ss_pred             ccceeeeecCCeEEEEEEEecCCCCeEEEEEC--CEEee----------------cCCcEEEEEeeCcEEEEEEccccCC
Q psy16863        754 GLKSCQATVNEEFKFTVQVSISPEPKVSWFRD--DQQVV----------------ESDNVKILKETLGVCHLKIHALEVA  815 (1075)
Q Consensus       754 ~~~~~~~~~g~~~~l~C~v~g~p~p~v~W~k~--g~~i~----------------~~~~~~~~~~~~~~~~L~I~~~~~~  815 (1075)
                      .+....+.+|++++|.|.....-...+.|||-  |+.+.                ...++.......  ..|.|..++.+
T Consensus         7 ~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~--~~l~l~~~~~~   84 (112)
T d1fo0b_           7 NPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTD--TELRLQVANMS   84 (112)
T ss_dssp             ECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEET--TEEEEEEESCC
T ss_pred             CCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccc--cEEEEecCCcc
Confidence            34455688999999999987655568999984  32111                012233332222  36888888999


Q ss_pred             CCeEEEEEEEe
Q psy16863        816 DQAEWKCIATN  826 (1075)
Q Consensus       816 D~G~Y~C~A~N  826 (1075)
                      |++.|.|.+.-
T Consensus        85 dsa~Y~Ca~~~   95 (112)
T d1fo0b_          85 QGRTLYCTCSA   95 (112)
T ss_dssp             SCEEEEEEEES
T ss_pred             CCccEEEEEec
Confidence            99999998753

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.81  E-value=0.0055  Score=50.68  Aligned_cols=70  Identities=16%  Similarity=0.302  Sum_probs=50.4

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEE--CCEec------CC-------------CCcEEEEEc--CCEEEEEEcc
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYR--NDRKL------EE-------------NKIYRTQHD--GNFYFIDLSS  411 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k--~g~~l------~~-------------~~~~~~~~~--g~~~~L~I~~  411 (1075)
                      ....+++|++++|.|.++|..  .--+.|+|  .|+.+      ..             ..|+.+..+  .+...|.|.+
T Consensus         8 G~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~   87 (120)
T d1dlfh_           8 GGGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNT   87 (120)
T ss_dssp             CCCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CCceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceee
Confidence            345678999999999998753  56889987  23221      10             135666554  4567899999


Q ss_pred             cCCCCceeEEEEEEe
Q psy16863        412 VSLFDSGRWTCLAEN  426 (1075)
Q Consensus       412 v~~~d~G~Y~C~a~n  426 (1075)
                      ++.+|++.|.|....
T Consensus        88 L~~eDtAvYYCA~~~  102 (120)
T d1dlfh_          88 LRAEDTGIYYCTGIY  102 (120)
T ss_dssp             CCGGGCEEEEEEEEB
T ss_pred             ccCCCceEEEeeEec
Confidence            999999999996543

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.81  E-value=0.0027  Score=52.39  Aligned_cols=68  Identities=19%  Similarity=0.325  Sum_probs=49.6

Q ss_pred             eeecCCeEEEEEEEecCC--CCeEEEEEC--CEE------eec-----------CCcEEEEEee-CcEEEEEEccccCCC
Q psy16863        759 QATVNEEFKFTVQVSISP--EPKVSWFRD--DQQ------VVE-----------SDNVKILKET-LGVCHLKIHALEVAD  816 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~------i~~-----------~~~~~~~~~~-~~~~~L~I~~~~~~D  816 (1075)
                      .+.+|++++|+|.++|..  .-.+.|+|-  |+.      |..           ..|+.+..+. ..+..|.|++++.+|
T Consensus        11 ~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~eD   90 (117)
T d1iqdb1          11 VKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSDD   90 (117)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcCc
Confidence            467899999999999864  336889872  321      111           2356666553 346789999999999


Q ss_pred             CeEEEEEEEe
Q psy16863        817 QAEWKCIATN  826 (1075)
Q Consensus       817 ~G~Y~C~A~N  826 (1075)
                      ++.|.|....
T Consensus        91 tAvYYCA~~~  100 (117)
T d1iqdb1          91 TAVYYCAVPD  100 (117)
T ss_dssp             CEEEEEEECS
T ss_pred             ceEEEEeEcC
Confidence            9999998654

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.81  E-value=0.0028  Score=51.99  Aligned_cols=68  Identities=19%  Similarity=0.322  Sum_probs=49.2

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEe------cCC-----------CCcEEEEEc--CCEEEEEEcccC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRK------LEE-----------NKIYRTQHD--GNFYFIDLSSVS  413 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~------l~~-----------~~~~~~~~~--g~~~~L~I~~v~  413 (1075)
                      ....+++|++++|.|.++|..  ...+.|+|.  |+.      |..           ..|+.+..+  .+...|.|.+++
T Consensus         8 G~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~   87 (114)
T d1indh1           8 GGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLR   87 (114)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeec
Confidence            345788999999999998854  446789872  221      211           135666654  456779999999


Q ss_pred             CCCceeEEEEE
Q psy16863        414 LFDSGRWTCLA  424 (1075)
Q Consensus       414 ~~d~G~Y~C~a  424 (1075)
                      .+|++.|.|..
T Consensus        88 ~eDtAvYYCA~   98 (114)
T d1indh1          88 SEDTALYFCAS   98 (114)
T ss_dssp             GGGCEEEEEEC
T ss_pred             cCcccEEEECC
Confidence            99999999963

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.80  E-value=0.0016  Score=53.92  Aligned_cols=68  Identities=13%  Similarity=0.264  Sum_probs=43.9

Q ss_pred             cCCeEEEEEEEec-CC-CcEEEEEECCEecCCCC--cEEEEEcCCEE---EEEEcccCCCCceeEEEEEEeCCCc
Q psy16863        363 VGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENK--IYRTQHDGNFY---FIDLSSVSLFDSGRWTCLAENAVGR  430 (1075)
Q Consensus       363 ~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~--~~~~~~~g~~~---~L~I~~v~~~d~G~Y~C~a~n~~g~  430 (1075)
                      ....++|.|.+.| .| ...|+|++||.++....  ......+|...   .|.|..-.......|+|.+.+....
T Consensus        18 ~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~~~   92 (102)
T d1i1ca2          18 TQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE   92 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             cCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCCCC
Confidence            3568999999977 33 57999999998875321  11223345443   3555543334455899999997543

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=96.80  E-value=0.0074  Score=49.45  Aligned_cols=71  Identities=15%  Similarity=0.162  Sum_probs=47.9

Q ss_pred             eecCCeEEEEEEEec-CCCCceEEEEeCCeEEecCCcEEEEEcCCceEEEE-EeeeeecCCceEEEEEECCCC
Q psy16863        562 AKIGTSAILECQVLV-PPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSIE-INYLEAVDDGEWKCVATSSSG  632 (1075)
Q Consensus       562 v~~G~~~~L~C~~~~-~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L~-i~~~~~~d~G~Y~C~a~n~~g  632 (1075)
                      +..|+..+|.|.+.+ .|....|.|+++|..+..........++.+.|.+. .-.+..++...|+|.+.+..-
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~~l   87 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEPD   87 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECCCTTCCEEEEEEETTT
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEecCCCCEEEEEEEeCCC
Confidence            346888899999998 45567999999998765443333444444444432 123455666779999999754

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.80  E-value=0.0026  Score=53.18  Aligned_cols=69  Identities=17%  Similarity=0.309  Sum_probs=50.2

Q ss_pred             cCceeeccCCeEEEEEEEecCC--CcEEEEEE--CCEec------CC-----------CCcEEEEEc--CCEEEEEEccc
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPT--EIKIHWYR--NDRKL------EE-----------NKIYRTQHD--GNFYFIDLSSV  412 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k--~g~~l------~~-----------~~~~~~~~~--g~~~~L~I~~v  412 (1075)
                      .....+++|++++|.|.++|..  ..-+.|+|  .|+.|      ..           ..|+.+..+  .+...|.|.++
T Consensus         7 sg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L   86 (127)
T d1n0xh1           7 SGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSL   86 (127)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEcc
Confidence            3456788999999999998854  44788987  23221      11           135666654  46678999999


Q ss_pred             CCCCceeEEEEE
Q psy16863        413 SLFDSGRWTCLA  424 (1075)
Q Consensus       413 ~~~d~G~Y~C~a  424 (1075)
                      +.+|++.|.|.-
T Consensus        87 ~~eDtAvYYCAR   98 (127)
T d1n0xh1          87 RSADTAVYYCAR   98 (127)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CCCCceEEEEEe
Confidence            999999999964

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.79  E-value=0.0045  Score=52.06  Aligned_cols=73  Identities=14%  Similarity=0.195  Sum_probs=52.1

Q ss_pred             ecCceeeccCCeEEEEEEEecCC--CcEEEEEE--CCEec------CC-----------CCcEEEEEc--CCEEEEEEcc
Q psy16863        355 RLHDIAVKVGTRARLLVEIRSPT--EIKIHWYR--NDRKL------EE-----------NKIYRTQHD--GNFYFIDLSS  411 (1075)
Q Consensus       355 ~~~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k--~g~~l------~~-----------~~~~~~~~~--g~~~~L~I~~  411 (1075)
                      ......+++|++++|.|.++|..  .--+.|+|  .|+.+      ..           ..|+.+..+  .+...|.|.+
T Consensus         5 esg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~   84 (130)
T d1rhhb1           5 QSGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTN   84 (130)
T ss_dssp             ECCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             ccCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeec
Confidence            34456688999999999998753  45789987  23221      11           236666654  4566799999


Q ss_pred             cCCCCceeEEEEEEeC
Q psy16863        412 VSLFDSGRWTCLAENA  427 (1075)
Q Consensus       412 v~~~d~G~Y~C~a~n~  427 (1075)
                      ++.+|++.|.|.....
T Consensus        85 L~~eDtAvYyCAr~~~  100 (130)
T d1rhhb1          85 LRSDDTAVYYCARDFG  100 (130)
T ss_dssp             CCGGGCEEEEEEEECC
T ss_pred             cCCCCcEEEEEEeecC
Confidence            9999999999986543

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.79  E-value=0.0034  Score=52.54  Aligned_cols=69  Identities=23%  Similarity=0.373  Sum_probs=50.5

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEe------cCC-----------CCcEEEEEc--CCEEEEEEcccC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRK------LEE-----------NKIYRTQHD--GNFYFIDLSSVS  413 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~------l~~-----------~~~~~~~~~--g~~~~L~I~~v~  413 (1075)
                      ....+++|++++|.|.++|..  .-.+.|+|.  |+.      |..           ..|+.+..+  .+...|.|.+++
T Consensus         7 G~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~   86 (124)
T d1zvya1           7 GGGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVK   86 (124)
T ss_dssp             CCEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceecccc
Confidence            345788999999999998854  558899883  221      111           135566554  466789999999


Q ss_pred             CCCceeEEEEEE
Q psy16863        414 LFDSGRWTCLAE  425 (1075)
Q Consensus       414 ~~d~G~Y~C~a~  425 (1075)
                      .+|++.|.|...
T Consensus        87 ~eDtAvYYCAr~   98 (124)
T d1zvya1          87 SEDTAIYTCGAT   98 (124)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             CCcceEEEEeec
Confidence            999999999764

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.79  E-value=0.0034  Score=52.47  Aligned_cols=69  Identities=17%  Similarity=0.230  Sum_probs=50.4

Q ss_pred             cCceeeccCCeEEEEEEEecCC--CcEEEEEE--CCEe------cC-C----------CCcEEEEEc--CCEEEEEEccc
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPT--EIKIHWYR--NDRK------LE-E----------NKIYRTQHD--GNFYFIDLSSV  412 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k--~g~~------l~-~----------~~~~~~~~~--g~~~~L~I~~v  412 (1075)
                      .....+++|++++|.|.++|..  ..-+.|+|  .|+.      |. .          ..|+.+..+  .+...|.|.++
T Consensus         6 sG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L   85 (126)
T d1lmka1           6 SGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSL   85 (126)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeeccc
Confidence            3456788999999999998854  45788987  2221      11 1          245566544  56678999999


Q ss_pred             CCCCceeEEEEE
Q psy16863        413 SLFDSGRWTCLA  424 (1075)
Q Consensus       413 ~~~d~G~Y~C~a  424 (1075)
                      +.+|++.|.|..
T Consensus        86 ~~eDTAvYYCAr   97 (126)
T d1lmka1          86 TSEDSAVYYCAR   97 (126)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CCCcceEEEEee
Confidence            999999999964

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.77  E-value=0.0051  Score=51.34  Aligned_cols=69  Identities=17%  Similarity=0.317  Sum_probs=49.9

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEec------C-C----------CCcEEEEEc--CCEEEEEEcccC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRKL------E-E----------NKIYRTQHD--GNFYFIDLSSVS  413 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~l------~-~----------~~~~~~~~~--g~~~~L~I~~v~  413 (1075)
                      ....+++|++++|.|.++|..  ..-+.|+|.  |+.+      . .          ..|+.+..+  .+...|.|.+++
T Consensus         8 g~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~   87 (121)
T d1j05b_           8 GAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLT   87 (121)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccC
Confidence            455688999999999998754  457899873  3222      1 1          135555543  456679999999


Q ss_pred             CCCceeEEEEEE
Q psy16863        414 LFDSGRWTCLAE  425 (1075)
Q Consensus       414 ~~d~G~Y~C~a~  425 (1075)
                      .+|++.|.|...
T Consensus        88 ~eDtAvYYCAr~   99 (121)
T d1j05b_          88 SEDTAVYYCAPF   99 (121)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCcceEEEeEee
Confidence            999999999754

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.77  E-value=0.0027  Score=53.04  Aligned_cols=68  Identities=16%  Similarity=0.289  Sum_probs=48.5

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEec------CC-----------CCcEEEEE--cCCEEEEEEcccC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRKL------EE-----------NKIYRTQH--DGNFYFIDLSSVS  413 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~l------~~-----------~~~~~~~~--~g~~~~L~I~~v~  413 (1075)
                      ....+++|++++|.|.++|..  ...+.|+|.  |+.+      ..           ..|+.+..  ..+...|+|.+++
T Consensus         8 g~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~   87 (119)
T d1qnzh_           8 GAELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLT   87 (119)
T ss_dssp             CCCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccC
Confidence            344678999999999998743  346899872  3221      11           13566654  3456679999999


Q ss_pred             CCCceeEEEEE
Q psy16863        414 LFDSGRWTCLA  424 (1075)
Q Consensus       414 ~~d~G~Y~C~a  424 (1075)
                      .+|++.|.|..
T Consensus        88 ~eDsAvYYCA~   98 (119)
T d1qnzh_          88 SDDSAVYYCAI   98 (119)
T ss_dssp             GGGCEEEEEEE
T ss_pred             ccceeEEEEEE
Confidence            99999999964

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.77  E-value=0.0029  Score=53.22  Aligned_cols=69  Identities=23%  Similarity=0.335  Sum_probs=49.8

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEE--CCEec------C-C----------CCcEEEEEc--CCEEEEEEcccC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYR--NDRKL------E-E----------NKIYRTQHD--GNFYFIDLSSVS  413 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k--~g~~l------~-~----------~~~~~~~~~--g~~~~L~I~~v~  413 (1075)
                      ....+++|++++|.|.++|..  ...+.|+|  .|+.|      . .          ..|+.+..+  .+...|.|.+++
T Consensus         8 g~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~   87 (125)
T d1rihh1           8 GNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLT   87 (125)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccC
Confidence            455678999999999998854  34688887  22211      1 1          135566554  456789999999


Q ss_pred             CCCceeEEEEEE
Q psy16863        414 LFDSGRWTCLAE  425 (1075)
Q Consensus       414 ~~d~G~Y~C~a~  425 (1075)
                      .+|++.|.|...
T Consensus        88 ~eDtAvYYCAR~   99 (125)
T d1rihh1          88 SEDSAVYYCARE   99 (125)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccceEEEEeee
Confidence            999999999864

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=96.76  E-value=0.0051  Score=50.72  Aligned_cols=68  Identities=19%  Similarity=0.315  Sum_probs=49.4

Q ss_pred             eeecCCeEEEEEEEecCC--CCeEEEEEC--CEEe------e--------c--CCcEEEEEee-CcEEEEEEccccCCCC
Q psy16863        759 QATVNEEFKFTVQVSISP--EPKVSWFRD--DQQV------V--------E--SDNVKILKET-LGVCHLKIHALEVADQ  817 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~i------~--------~--~~~~~~~~~~-~~~~~L~I~~~~~~D~  817 (1075)
                      .+.+|++++|+|.++|..  .-.+.|+|-  |+.+      .        .  ..|+.+..+. .....|.|++++.+|+
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eDt   90 (116)
T d7fabh1          11 LVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAADT   90 (116)
T ss_dssp             EECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccccc
Confidence            467899999999999864  346889873  3211      1        1  2466676543 3467899999999999


Q ss_pred             eEEEEEEEe
Q psy16863        818 AEWKCIATN  826 (1075)
Q Consensus       818 G~Y~C~A~N  826 (1075)
                      +.|-|...-
T Consensus        91 AvYyCAr~~   99 (116)
T d7fabh1          91 AVYYCARNL   99 (116)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEeeeec
Confidence            999997543

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.76  E-value=0.0014  Score=51.86  Aligned_cols=62  Identities=15%  Similarity=0.236  Sum_probs=44.4

Q ss_pred             CeEEEEEEEecC--CCcEEEEEECCEecCCCCcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCC
Q psy16863        365 TRARLLVEIRSP--TEIKIHWYRNDRKLEENKIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAV  428 (1075)
Q Consensus       365 ~~v~l~C~~~g~--p~~~v~W~k~g~~l~~~~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~  428 (1075)
                      ..++|.|.+.|.  +...|+|.+||..+..........+|....+.+..+.  ....|+|++.+..
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~gtys~~s~~~~~--~~~~yTC~V~H~~   77 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLGKYE--DSNSVTCSVQHDN   77 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECCCEEEECTTSSEEEEEEEEET--TTTTCEEEEEETT
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCcEEeeeccCCcEEEEEEEecC--CCCEEEEEEEECC
Confidence            346899999883  3679999999988766555555566766655555443  4447999999874

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.76  E-value=0.0047  Score=49.48  Aligned_cols=67  Identities=12%  Similarity=0.216  Sum_probs=45.2

Q ss_pred             CCeEEEEEEEecC-CCCceEEEEeCCeEEecCCcEEEEEcCCceEEE-EEeeeeecCCceEEEEEECCCC
Q psy16863        565 GTSAILECQVLVP-PWPRSIYWYNKEGVVEASDKYHIMADGLGGYSI-EINYLEAVDDGEWKCVATSSSG  632 (1075)
Q Consensus       565 G~~~~L~C~~~~~-p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L-~i~~~~~~d~G~Y~C~a~n~~g  632 (1075)
                      +..++|.|.+.|. |....++|+++|..+.. .......++.+.+.+ ..-.+...+...|+|++.+..-
T Consensus        15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~-~~~~~~~~~dgty~~~S~l~v~~~~~~~ytC~V~H~sL   83 (91)
T d3frua1          15 SGSSVLTCAAFSFYPPELKFRFLRNGLASGS-GNCSTGPNGDGSFHAWSLLEVKRGDEHHYQCQVEHEGL   83 (91)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCC-CEEEEEECSSSCEEEEEEEEEETTCGGGEEEEEECTTS
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEeCCc-cCccceecCCCCEeEEEEEEECCCCCCEEEEEEEeCCC
Confidence            5689999999984 66679999999987643 334444455444432 1223345566789999998753

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.76  E-value=0.0033  Score=50.97  Aligned_cols=66  Identities=21%  Similarity=0.302  Sum_probs=42.4

Q ss_pred             cCCeEEEEEEEecCC--CcEEEEEEC--CEec------C-C----------CCcEEEEEc--CCEEEEEEcccCCCCcee
Q psy16863        363 VGTRARLLVEIRSPT--EIKIHWYRN--DRKL------E-E----------NKIYRTQHD--GNFYFIDLSSVSLFDSGR  419 (1075)
Q Consensus       363 ~G~~v~l~C~~~g~p--~~~v~W~k~--g~~l------~-~----------~~~~~~~~~--g~~~~L~I~~v~~~d~G~  419 (1075)
                      +|++++|.|.++|..  .--+.|+|.  |+.+      . .          ..|+.+..+  .+...|+|.+++.+|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            489999999998854  457999972  3322      1 1          245666644  455689999999999999


Q ss_pred             EEEEEEeCC
Q psy16863        420 WTCLAENAV  428 (1075)
Q Consensus       420 Y~C~a~n~~  428 (1075)
                      |.|......
T Consensus        81 YYCAr~~~~   89 (103)
T d1oari_          81 YYCARMWYY   89 (103)
T ss_dssp             EEEEEEECS
T ss_pred             EEeEEECCC
Confidence            999865443

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=96.76  E-value=0.0021  Score=52.57  Aligned_cols=77  Identities=17%  Similarity=0.233  Sum_probs=47.7

Q ss_pred             CCCeEEeccceeeeecCCeEEEEEEEecC-C-CCeEEEEECCEEeecCCc-EEEEEeeCcE----EEEEEccccCCCCeE
Q psy16863        747 KAPKFIEGLKSCQATVNEEFKFTVQVSIS-P-EPKVSWFRDDQQVVESDN-VKILKETLGV----CHLKIHALEVADQAE  819 (1075)
Q Consensus       747 ~~p~~~~~~~~~~~~~g~~~~l~C~v~g~-p-~p~v~W~k~g~~i~~~~~-~~~~~~~~~~----~~L~I~~~~~~D~G~  819 (1075)
                      .+|.+..-+.. ....|+..+|.|.+.|. | ...|+|++||+++..+.. .....+++++    +.|.|.   .+|...
T Consensus         4 ~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~---~~~~~~   79 (99)
T d1uvqa1           4 EVPEVTVFSKS-PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL---PSADEI   79 (99)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEC---CCTTCC
T ss_pred             cCCEEEEEcCC-cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEc---CCCCCE
Confidence            46655442221 24567889999999985 4 468999999998864311 1111223332    234444   456678


Q ss_pred             EEEEEEeC
Q psy16863        820 WKCIATND  827 (1075)
Q Consensus       820 Y~C~A~N~  827 (1075)
                      |+|.+...
T Consensus        80 ytC~V~H~   87 (99)
T d1uvqa1          80 YDCKVEHW   87 (99)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEeC
Confidence            99999865

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.75  E-value=0.004  Score=51.63  Aligned_cols=69  Identities=19%  Similarity=0.328  Sum_probs=49.5

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEe------cC-C----------CCcEEEEEc--CCEEEEEEcccC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRK------LE-E----------NKIYRTQHD--GNFYFIDLSSVS  413 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~------l~-~----------~~~~~~~~~--g~~~~L~I~~v~  413 (1075)
                      ....+++|++++|.|.++|..  .--+.|+|.  |+.      |. .          ..|+.+..+  .+...|.|.+++
T Consensus         8 g~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~   87 (119)
T d1rz7h1           8 GAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLR   87 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccC
Confidence            445678999999999999854  447889872  211      11 1          136666553  466789999999


Q ss_pred             CCCceeEEEEEE
Q psy16863        414 LFDSGRWTCLAE  425 (1075)
Q Consensus       414 ~~d~G~Y~C~a~  425 (1075)
                      .+|++.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (119)
T d1rz7h1          88 SEDTAVYYCAAD   99 (119)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cccceEEEEeec
Confidence            999999999653

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=96.74  E-value=0.0031  Score=52.11  Aligned_cols=69  Identities=19%  Similarity=0.283  Sum_probs=49.5

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEE--CCEe------cCC-----------CCcEEEEE--cCCEEEEEEcccC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYR--NDRK------LEE-----------NKIYRTQH--DGNFYFIDLSSVS  413 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k--~g~~------l~~-----------~~~~~~~~--~g~~~~L~I~~v~  413 (1075)
                      ....+++|++++|.|.++|..  .--+.|+|  .|+.      |..           ..|+.+..  ..+...|.|.+++
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~   87 (118)
T d1ct8b1           8 GAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLT   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccC
Confidence            456788999999999998854  45788887  2321      111           13555554  3466789999999


Q ss_pred             CCCceeEEEEEE
Q psy16863        414 LFDSGRWTCLAE  425 (1075)
Q Consensus       414 ~~d~G~Y~C~a~  425 (1075)
                      .+|++.|.|...
T Consensus        88 ~eDtAvYYCAr~   99 (118)
T d1ct8b1          88 TEDSAIYYCARY   99 (118)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEeee
Confidence            999999999653

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.0034  Score=52.01  Aligned_cols=75  Identities=9%  Similarity=0.100  Sum_probs=43.9

Q ss_pred             eeeccCCeEEEEEEEec-CC-CcEEEEEECCEecCCCCc--EEEEEcCCEE---EEEEcccCCC--CceeEEEEEEeCCC
Q psy16863        359 IAVKVGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKI--YRTQHDGNFY---FIDLSSVSLF--DSGRWTCLAENAVG  429 (1075)
Q Consensus       359 ~~v~~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~--~~~~~~g~~~---~L~I~~v~~~--d~G~Y~C~a~n~~g  429 (1075)
                      ......+.++|.|.+.| .| ...|+|.++|..+.....  -....+|...   .|.|..-.-.  ....|+|.+.+..+
T Consensus        16 ~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~   95 (105)
T d1dn0b2          16 NSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNG   95 (105)
T ss_dssp             -----CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTC
T ss_pred             cccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCC
Confidence            34445678999999988 44 679999999976643211  1123455432   4555432221  12379999999876


Q ss_pred             ceee
Q psy16863        430 RSHC  433 (1075)
Q Consensus       430 ~~~~  433 (1075)
                      ....
T Consensus        96 ~~~~   99 (105)
T d1dn0b2          96 NKEK   99 (105)
T ss_dssp             CEEE
T ss_pred             CEEe
Confidence            5543

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.74  E-value=0.0028  Score=52.47  Aligned_cols=68  Identities=18%  Similarity=0.306  Sum_probs=49.0

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEe------cCC-----------CCcEEEEEc--CCEEEEEEcccC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRK------LEE-----------NKIYRTQHD--GNFYFIDLSSVS  413 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~------l~~-----------~~~~~~~~~--g~~~~L~I~~v~  413 (1075)
                      ....+++|++++|.|.++|..  ...+.|+|.  |+.      |..           ..|+.+..+  .+...|.|.+++
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~   87 (119)
T d1eapb1           8 GTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLT   87 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeeccc
Confidence            445678999999999998854  447889872  221      221           135555543  456689999999


Q ss_pred             CCCceeEEEEE
Q psy16863        414 LFDSGRWTCLA  424 (1075)
Q Consensus       414 ~~d~G~Y~C~a  424 (1075)
                      .+|++.|.|..
T Consensus        88 ~eDTAvYYCAr   98 (119)
T d1eapb1          88 SEDSAVYFCKR   98 (119)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCcceEEEEEE
Confidence            99999999954

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.74  E-value=0.0017  Score=53.55  Aligned_cols=67  Identities=13%  Similarity=0.205  Sum_probs=43.2

Q ss_pred             CCeEEEEEEEec-CCCCceEEEEeCCeEEecCCcEEEEEcCCceE----EEEEeeeeecCCceEEEEEECCC
Q psy16863        565 GTSAILECQVLV-PPWPRSIYWYNKEGVVEASDKYHIMADGLGGY----SIEINYLEAVDDGEWKCVATSSS  631 (1075)
Q Consensus       565 G~~~~L~C~~~~-~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~  631 (1075)
                      .+.++|.|.+.+ .|....|+|+++|..+..........+..+.|    .|+|..-.......|+|.+.+..
T Consensus        18 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          18 KDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            567899999998 46667999999998754211111111222222    45665444455777999999874

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.74  E-value=0.0032  Score=52.06  Aligned_cols=71  Identities=17%  Similarity=0.265  Sum_probs=50.9

Q ss_pred             eeecCCeEEEEEEEecCCCC--eEEEEEC--CEE------eec-----------CCcEEEEEee-CcEEEEEEccccCCC
Q psy16863        759 QATVNEEFKFTVQVSISPEP--KVSWFRD--DQQ------VVE-----------SDNVKILKET-LGVCHLKIHALEVAD  816 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p~p--~v~W~k~--g~~------i~~-----------~~~~~~~~~~-~~~~~L~I~~~~~~D  816 (1075)
                      .+++|++++|+|.++|..-.  .+.|+|-  |+.      |..           ..|+.+..+. ..+..|.|++++.+|
T Consensus        11 ~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~eD   90 (118)
T d2fbjh1          11 LVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSED   90 (118)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCCc
Confidence            47789999999999997533  5889862  321      111           1356666543 346789999999999


Q ss_pred             CeEEEEEEEeCCc
Q psy16863        817 QAEWKCIATNDFG  829 (1075)
Q Consensus       817 ~G~Y~C~A~N~~G  829 (1075)
                      ++.|.|......+
T Consensus        91 tAvYYCAr~~~~~  103 (118)
T d2fbjh1          91 TALYYCARLHYYG  103 (118)
T ss_dssp             CEEEEEEEEETTT
T ss_pred             ceEEEeeEecCCC
Confidence            9999998765433

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.73  E-value=0.0027  Score=51.42  Aligned_cols=68  Identities=12%  Similarity=0.228  Sum_probs=43.2

Q ss_pred             cCCeEEEEEEEecCCC--CeEEEEEC--CEEe------e-c----------CCcEEEEEee-CcEEEEEEccccCCCCeE
Q psy16863        762 VNEEFKFTVQVSISPE--PKVSWFRD--DQQV------V-E----------SDNVKILKET-LGVCHLKIHALEVADQAE  819 (1075)
Q Consensus       762 ~g~~~~l~C~v~g~p~--p~v~W~k~--g~~i------~-~----------~~~~~~~~~~-~~~~~L~I~~~~~~D~G~  819 (1075)
                      +|++++|+|.++|..-  --+.|+|-  |+.+      . .          ..|+.+..+. ..+..|+|++++.+|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            4899999999998653  36899873  3322      1 1          1456665432 346789999999999999


Q ss_pred             EEEEEEeCCc
Q psy16863        820 WKCIATNDFG  829 (1075)
Q Consensus       820 Y~C~A~N~~G  829 (1075)
                      |-|......+
T Consensus        81 YYCAr~~~~~   90 (103)
T d1oari_          81 YYCARMWYYG   90 (103)
T ss_dssp             EEEEEEECSS
T ss_pred             EEeEEECCCC
Confidence            9998655443

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.73  E-value=0.0053  Score=50.66  Aligned_cols=68  Identities=13%  Similarity=0.239  Sum_probs=49.6

Q ss_pred             eeeecCCeEEEEEEEecCCC--CeEEEEEC--CEE------eec-----------CCcEEEEEee-CcEEEEEEccccCC
Q psy16863        758 CQATVNEEFKFTVQVSISPE--PKVSWFRD--DQQ------VVE-----------SDNVKILKET-LGVCHLKIHALEVA  815 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p~--p~v~W~k~--g~~------i~~-----------~~~~~~~~~~-~~~~~L~I~~~~~~  815 (1075)
                      ..+.+|++++|+|.++|..-  -.+.|+|-  |+.      |..           ..|+.+..+. ..+..|.|.+++.+
T Consensus         9 ~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~e   88 (117)
T d1um5h1           9 VLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTSE   88 (117)
T ss_dssp             EEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCCC
Confidence            34778999999999998653  36899873  321      211           1466666543 45678999999999


Q ss_pred             CCeEEEEEEE
Q psy16863        816 DQAEWKCIAT  825 (1075)
Q Consensus       816 D~G~Y~C~A~  825 (1075)
                      |++.|.|...
T Consensus        89 DtAvYYCAr~   98 (117)
T d1um5h1          89 DSAVYYCARS   98 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeec
Confidence            9999999653

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.73  E-value=0.0037  Score=51.86  Aligned_cols=68  Identities=19%  Similarity=0.355  Sum_probs=49.6

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEec------C-C----------CCcEEEEEc--CCEEEEEEcccC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRKL------E-E----------NKIYRTQHD--GNFYFIDLSSVS  413 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~l------~-~----------~~~~~~~~~--g~~~~L~I~~v~  413 (1075)
                      ....+++|++++|.|.++|..  ..-+.|+|.  |+.+      . .          ..|+.+..+  .+...|.|.+++
T Consensus         8 G~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~   87 (121)
T d2p49b1           8 GGGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLK   87 (121)
T ss_dssp             ECEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeecc
Confidence            345678999999999998743  567899872  2211      1 1          136666654  456679999999


Q ss_pred             CCCceeEEEEE
Q psy16863        414 LFDSGRWTCLA  424 (1075)
Q Consensus       414 ~~d~G~Y~C~a  424 (1075)
                      .+|++.|.|..
T Consensus        88 ~eDtAvYYCAr   98 (121)
T d2p49b1          88 PEDTATYYCAA   98 (121)
T ss_dssp             GGGCEEEEEEE
T ss_pred             ccceeEEeeec
Confidence            99999999975

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00098  Score=54.29  Aligned_cols=67  Identities=18%  Similarity=0.289  Sum_probs=49.3

Q ss_pred             CCeeeeecceeecCCCeEEEEEEEEccCCCeeEEEECCEEcC--------CCCeeEEEECCCCceeeEEEEEEEEe
Q psy16863        847 KPKFLEELKAVLSEGGAVNLECKVIGVPQPTLKWFKDGRELK--------AGDIHKIISGEDGTCCLGIYTCEAHN  914 (1075)
Q Consensus       847 ~p~~~~~~~~~~~~g~~~~L~C~v~g~p~p~v~W~k~g~~l~--------~~~~~~i~~~~~~~~d~G~Y~C~a~N  914 (1075)
                      +|.+...+..++..|++|+|.|.. ..+...+.++|+|....        .+....+.+......|+|.|.|.-..
T Consensus         4 kP~Lsa~Ps~~V~~G~~VTL~C~~-~~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1           4 KPTLWAEPGSVITQGSPVTLRCQG-GQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             CCEEEEESCSEEETTCCEEEEEEC-CTTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEeECCCccCCCCcEEEEEeC-CCCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            566655566678899999999996 34456788999986421        12345677788889999999997654

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.72  E-value=0.004  Score=51.63  Aligned_cols=67  Identities=21%  Similarity=0.263  Sum_probs=48.9

Q ss_pred             eeecCCeEEEEEEEecCCC--CeEEEEEC--CEE------ee-c----------CCcEEEEEee-CcEEEEEEccccCCC
Q psy16863        759 QATVNEEFKFTVQVSISPE--PKVSWFRD--DQQ------VV-E----------SDNVKILKET-LGVCHLKIHALEVAD  816 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p~--p~v~W~k~--g~~------i~-~----------~~~~~~~~~~-~~~~~L~I~~~~~~D  816 (1075)
                      .+.+|++++|+|.++|..-  -.+.|+|-  |+.      |. .          ..|+.+..+. ..+..|.|++++.+|
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~eD   90 (119)
T d1rz7h1          11 VKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSED   90 (119)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCccc
Confidence            4678999999999998653  36899873  221      11 1          1367776643 457789999999999


Q ss_pred             CeEEEEEEE
Q psy16863        817 QAEWKCIAT  825 (1075)
Q Consensus       817 ~G~Y~C~A~  825 (1075)
                      ++.|.|...
T Consensus        91 TAvYYCAr~   99 (119)
T d1rz7h1          91 TAVYYCAAD   99 (119)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEEeec
Confidence            999999653

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.71  E-value=0.0045  Score=51.38  Aligned_cols=68  Identities=16%  Similarity=0.242  Sum_probs=50.1

Q ss_pred             eeeecCCeEEEEEEEecCCC--CeEEEEEC--CEE------eec-----------CCcEEEEEee-CcEEEEEEccccCC
Q psy16863        758 CQATVNEEFKFTVQVSISPE--PKVSWFRD--DQQ------VVE-----------SDNVKILKET-LGVCHLKIHALEVA  815 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p~--p~v~W~k~--g~~------i~~-----------~~~~~~~~~~-~~~~~L~I~~~~~~  815 (1075)
                      ..+++|++++|+|.++|...  --+.|+|.  |+.      |..           ..|+.+..+. ..+..|.|++++.+
T Consensus        11 ~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~e   90 (122)
T d1vgeh1          11 EVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPE   90 (122)
T ss_dssp             EEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCCC
Confidence            45789999999999998753  36889872  221      111           1466776553 34678999999999


Q ss_pred             CCeEEEEEEE
Q psy16863        816 DQAEWKCIAT  825 (1075)
Q Consensus       816 D~G~Y~C~A~  825 (1075)
                      |++.|.|...
T Consensus        91 DtA~YYCAr~  100 (122)
T d1vgeh1          91 DTAVYYCARD  100 (122)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeec
Confidence            9999999764

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.70  E-value=0.0035  Score=52.19  Aligned_cols=68  Identities=19%  Similarity=0.374  Sum_probs=49.4

Q ss_pred             ceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEe------cCC-----------CCcEEEEEc--CCEEEEEEcccCC
Q psy16863        358 DIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRK------LEE-----------NKIYRTQHD--GNFYFIDLSSVSL  414 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~------l~~-----------~~~~~~~~~--g~~~~L~I~~v~~  414 (1075)
                      ...+++|++++|.|.++|..  .--+.|+|.  |+.      |..           ..|+.+..+  .+...|.|.+++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~   88 (121)
T d1ol0a_           9 GGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRA   88 (121)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeeccc
Confidence            45678999999999998754  346889872  222      111           135666654  4567899999999


Q ss_pred             CCceeEEEEEE
Q psy16863        415 FDSGRWTCLAE  425 (1075)
Q Consensus       415 ~d~G~Y~C~a~  425 (1075)
                      +|++.|.|...
T Consensus        89 eDtAvYYCAr~   99 (121)
T d1ol0a_          89 EDTAVYYCARE   99 (121)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccceEEEEEEe
Confidence            99999999754

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.70  E-value=0.004  Score=51.46  Aligned_cols=66  Identities=12%  Similarity=0.297  Sum_probs=47.6

Q ss_pred             eeecCCeEEEEEEEecCC--CCeEEEEEC--CEEe------e-c----------CCcEEEEEee-CcEEEEEEccccCCC
Q psy16863        759 QATVNEEFKFTVQVSISP--EPKVSWFRD--DQQV------V-E----------SDNVKILKET-LGVCHLKIHALEVAD  816 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~i------~-~----------~~~~~~~~~~-~~~~~L~I~~~~~~D  816 (1075)
                      .+.+|++++|+|.++|..  .-.+.|+|-  |+.+      . .          ..|+.+..+. ..+..|.|++++.+|
T Consensus        11 ~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~eD   90 (115)
T d1f3dh1          11 LVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFED   90 (115)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcCC
Confidence            367899999999999863  346899873  3222      1 1          1366666543 346789999999999


Q ss_pred             CeEEEEEE
Q psy16863        817 QAEWKCIA  824 (1075)
Q Consensus       817 ~G~Y~C~A  824 (1075)
                      ++.|.|..
T Consensus        91 tAvYYCAr   98 (115)
T d1f3dh1          91 SAVYYCAN   98 (115)
T ss_dssp             CEEEEEEE
T ss_pred             cEEEEEec
Confidence            99999953

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=96.69  E-value=0.0018  Score=52.95  Aligned_cols=57  Identities=28%  Similarity=0.483  Sum_probs=36.2

Q ss_pred             cCCeEEEEEEEECC-CCC-eEEEEeCCEeccCCC-----------EEE-EEeCCCCCCCcEEEEEEEEecc
Q psy16863        460 EQGTVSLECKVMGI-PTP-QLIWYKDNKKIKAGD-----------IFA-LTANPKDPSSLGTYTCEAVNCM  516 (1075)
Q Consensus       460 ~g~~v~l~C~~~g~-p~~-~v~W~~~g~~l~~~~-----------~~~-l~i~~~~~~d~G~Y~C~a~n~~  516 (1075)
                      .++..+|.|.+.|+ |.. .|+|++||.++..+.           .+. +..-.+...+...|+|.+.+..
T Consensus        17 ~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~s   87 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS   87 (98)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTT
T ss_pred             cCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECC
Confidence            45667899999985 443 899999999875421           121 1122234566779999998854

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.69  E-value=0.0044  Score=51.70  Aligned_cols=70  Identities=19%  Similarity=0.353  Sum_probs=50.0

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEe------cC-C----------CCcEEEEEc--CCEEEEEEcccC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRK------LE-E----------NKIYRTQHD--GNFYFIDLSSVS  413 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~------l~-~----------~~~~~~~~~--g~~~~L~I~~v~  413 (1075)
                      ....+++|++++|.|.++|..  .-.+.|+|.  |+.      |. .          ..|+.+..+  .+...|.|.+++
T Consensus         8 G~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~   87 (122)
T d1bz7b1           8 GGGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLR   87 (122)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeec
Confidence            345678899999999998854  457899872  221      11 1          145556544  466789999999


Q ss_pred             CCCceeEEEEEEe
Q psy16863        414 LFDSGRWTCLAEN  426 (1075)
Q Consensus       414 ~~d~G~Y~C~a~n  426 (1075)
                      .+|++.|.|...+
T Consensus        88 ~eDTAvYYCAr~~  100 (122)
T d1bz7b1          88 SEDTAIYYCTRGG  100 (122)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ccCceEEEeecCC
Confidence            9999999997643

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.69  E-value=0.0055  Score=51.07  Aligned_cols=67  Identities=12%  Similarity=0.234  Sum_probs=49.4

Q ss_pred             eeecCCeEEEEEEEecCC--CCeEEEEEC--CEEe------ec-----------CCcEEEEEee-CcEEEEEEccccCCC
Q psy16863        759 QATVNEEFKFTVQVSISP--EPKVSWFRD--DQQV------VE-----------SDNVKILKET-LGVCHLKIHALEVAD  816 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~i------~~-----------~~~~~~~~~~-~~~~~L~I~~~~~~D  816 (1075)
                      .+.+|++++|+|.++|..  .-.+.|+|-  |+.+      ..           ..|+.+..+. .+...|.|++++.+|
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~eD   90 (120)
T d1pg7x1          11 LVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSND   90 (120)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCCc
Confidence            477899999999999864  346899873  3321      11           1366666543 347789999999999


Q ss_pred             CeEEEEEEE
Q psy16863        817 QAEWKCIAT  825 (1075)
Q Consensus       817 ~G~Y~C~A~  825 (1075)
                      ++.|-|...
T Consensus        91 tA~YYCAr~   99 (120)
T d1pg7x1          91 SAVYYCARE   99 (120)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEeeec
Confidence            999999864

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.68  E-value=0.0046  Score=50.84  Aligned_cols=66  Identities=24%  Similarity=0.383  Sum_probs=49.0

Q ss_pred             eeecCCeEEEEEEEecCCC--CeEEEEEC--CEEe------ec----------CCcEEEEEee-CcEEEEEEccccCCCC
Q psy16863        759 QATVNEEFKFTVQVSISPE--PKVSWFRD--DQQV------VE----------SDNVKILKET-LGVCHLKIHALEVADQ  817 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p~--p~v~W~k~--g~~i------~~----------~~~~~~~~~~-~~~~~L~I~~~~~~D~  817 (1075)
                      .+.+|++++|+|.++|..-  -.+.|+|.  |+.+      ..          ..|+.+..+. .++..|.|++++.+|+
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eDt   90 (117)
T d1c5db1          11 LVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDT   90 (117)
T ss_dssp             EECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCcc
Confidence            4789999999999998653  36889873  3322      11          1367776553 3467899999999999


Q ss_pred             eEEEEEE
Q psy16863        818 AEWKCIA  824 (1075)
Q Consensus       818 G~Y~C~A  824 (1075)
                      +.|.|..
T Consensus        91 AvYYCAr   97 (117)
T d1c5db1          91 AIYFCTR   97 (117)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEec
Confidence            9999954

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.67  E-value=0.0037  Score=51.93  Aligned_cols=68  Identities=22%  Similarity=0.288  Sum_probs=49.8

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEE--CCEec------CC-----------CCcEEEEEc--CCEEEEEEcccC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYR--NDRKL------EE-----------NKIYRTQHD--GNFYFIDLSSVS  413 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k--~g~~l------~~-----------~~~~~~~~~--g~~~~L~I~~v~  413 (1075)
                      ....+++|++++|.|.++|..  ..-+.|+|  .|+.|      ..           ..|+.+..+  .+...|.|.+++
T Consensus         8 G~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~   87 (124)
T d1yedb1           8 GPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLK   87 (124)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCC
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccC
Confidence            445678999999999998854  45788987  22221      11           135666654  466789999999


Q ss_pred             CCCceeEEEEE
Q psy16863        414 LFDSGRWTCLA  424 (1075)
Q Consensus       414 ~~d~G~Y~C~a  424 (1075)
                      .+|++.|.|..
T Consensus        88 ~eDTAvYYCAR   98 (124)
T d1yedb1          88 SEDSAVYFCTR   98 (124)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCcceEEEecc
Confidence            99999999975

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.66  E-value=0.0057  Score=51.12  Aligned_cols=70  Identities=19%  Similarity=0.364  Sum_probs=50.2

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEe------cC-C----------CCcEEEEEc--CCEEEEEEcccC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRK------LE-E----------NKIYRTQHD--GNFYFIDLSSVS  413 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~------l~-~----------~~~~~~~~~--g~~~~L~I~~v~  413 (1075)
                      ....+++|++++|.|.++|..  ..-+.|+|.  |+.      |. .          ..|+.+..+  .+...|.|.+++
T Consensus         8 g~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~   87 (126)
T d1dfbh1           8 GGGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLR   87 (126)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeec
Confidence            345678999999999998854  447889872  221      11 1          235566654  456789999999


Q ss_pred             CCCceeEEEEEEe
Q psy16863        414 LFDSGRWTCLAEN  426 (1075)
Q Consensus       414 ~~d~G~Y~C~a~n  426 (1075)
                      .+|++.|.|....
T Consensus        88 ~eDtavYYCAr~~  100 (126)
T d1dfbh1          88 AEDMALYYCVKGR  100 (126)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cCcceEEEEEecc
Confidence            9999999997543

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.65  E-value=0.0047  Score=51.88  Aligned_cols=70  Identities=16%  Similarity=0.300  Sum_probs=50.2

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEe------cCC-----------CCcEEEEEcC--CEEEEEEcccC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRK------LEE-----------NKIYRTQHDG--NFYFIDLSSVS  413 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~------l~~-----------~~~~~~~~~g--~~~~L~I~~v~  413 (1075)
                      ....+++|++++|.|.++|..  ..-+.|+|.  |+.      |..           ..|+.+..+.  +...|.|.+++
T Consensus         8 G~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~   87 (135)
T d1ieha_           8 GGGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLK   87 (135)
T ss_dssp             CCCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCC
T ss_pred             CCceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeC
Confidence            445688999999999998854  456889872  221      111           2466666543  44679999999


Q ss_pred             CCCceeEEEEEEe
Q psy16863        414 LFDSGRWTCLAEN  426 (1075)
Q Consensus       414 ~~d~G~Y~C~a~n  426 (1075)
                      .+|++.|.|....
T Consensus        88 ~eDTAvYYCAr~~  100 (135)
T d1ieha_          88 SEDTAVYYCAKYS  100 (135)
T ss_dssp             SSSCEEEEEEEBS
T ss_pred             cccceeeEEEEec
Confidence            9999999997543

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.65  E-value=0.0046  Score=51.59  Aligned_cols=66  Identities=15%  Similarity=0.248  Sum_probs=47.8

Q ss_pred             eeecCCeEEEEEEEecCC--CCeEEEEEC--CEE------eec-----------CCcEEEEEee-CcEEEEEEccccCCC
Q psy16863        759 QATVNEEFKFTVQVSISP--EPKVSWFRD--DQQ------VVE-----------SDNVKILKET-LGVCHLKIHALEVAD  816 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~------i~~-----------~~~~~~~~~~-~~~~~L~I~~~~~~D  816 (1075)
                      .+.+|++++|+|.++|..  .-.+.|+|.  |+.      +..           ..|+.+..+. .....|+|++++++|
T Consensus        11 ~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~eD   90 (119)
T d1qnzh_          11 LVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSDD   90 (119)
T ss_dssp             EECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGGG
T ss_pred             eECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCccc
Confidence            477899999999999854  335899873  332      111           1366776543 346789999999999


Q ss_pred             CeEEEEEE
Q psy16863        817 QAEWKCIA  824 (1075)
Q Consensus       817 ~G~Y~C~A  824 (1075)
                      ++.|-|..
T Consensus        91 sAvYYCA~   98 (119)
T d1qnzh_          91 SAVYYCAI   98 (119)
T ss_dssp             CEEEEEEE
T ss_pred             eeEEEEEE
Confidence            99999954

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00067  Score=51.50  Aligned_cols=61  Identities=13%  Similarity=0.304  Sum_probs=43.4

Q ss_pred             ecCCeEEEEEEEecCCCCeEEEEECCEEeecCCcEEEEEeeCcEEEEEEccccC-CCCeEEEEEEE
Q psy16863        761 TVNEEFKFTVQVSISPEPKVSWFRDDQQVVESDNVKILKETLGVCHLKIHALEV-ADQAEWKCIAT  825 (1075)
Q Consensus       761 ~~g~~~~l~C~v~g~p~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~A~  825 (1075)
                      ..|.+|.|+|...  +...|.|.|++..+..............  .|.+.+.+. +++|.|.|.+.
T Consensus         8 ISGTtV~LTCP~~--~~~~i~W~~n~~~~~~~~~~~~~~~~~~--~l~L~dfSe~e~sGyY~C~~~   69 (91)
T d1xiwa_           8 ISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDED--HLSLKEFSELEQSGYYVCYPR   69 (91)
T ss_dssp             EETTEEEEECSSC--TTSCEEEEETTEEESSSCSCTTEEEETT--EEEETTCCHHHHCEEEEEEET
T ss_pred             EeCCEEEEECCCC--CCCceeeeeccccccCCCcccccccccc--eEEecccCccccCceEEEEcC
Confidence            3589999999743  4568999999998875432111111222  688899876 89999999985

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=96.64  E-value=0.0026  Score=53.01  Aligned_cols=69  Identities=23%  Similarity=0.284  Sum_probs=49.5

Q ss_pred             CceeeccCCeEEEEEEEecCC----CcEEEEEEC--CEec------CC----------CCcEEEEEc--CCEEEEEEccc
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT----EIKIHWYRN--DRKL------EE----------NKIYRTQHD--GNFYFIDLSSV  412 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p----~~~v~W~k~--g~~l------~~----------~~~~~~~~~--g~~~~L~I~~v  412 (1075)
                      ....+++|++++|.|.++|..    ..-+.|+|.  |+.|      ..          ..|+.+..+  .+...|.|.++
T Consensus         8 G~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL   87 (120)
T d1ai1h1           8 GPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISV   87 (120)
T ss_dssp             CCSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSC
T ss_pred             CCceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeee
Confidence            345678999999999998753    346789883  2222      11          135566553  45678999999


Q ss_pred             CCCCceeEEEEEE
Q psy16863        413 SLFDSGRWTCLAE  425 (1075)
Q Consensus       413 ~~~d~G~Y~C~a~  425 (1075)
                      +.+|++.|.|...
T Consensus        88 ~~eDtAvYYCAr~  100 (120)
T d1ai1h1          88 TNEDTAMYYCSRE  100 (120)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             eccceeEEEEEec
Confidence            9999999999754

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.64  E-value=0.0048  Score=51.63  Aligned_cols=68  Identities=18%  Similarity=0.362  Sum_probs=50.0

Q ss_pred             eeecCCeEEEEEEEecCC--CCeEEEEEC--CEE------eec-----------CCcEEEEEee-CcEEEEEEccccCCC
Q psy16863        759 QATVNEEFKFTVQVSISP--EPKVSWFRD--DQQ------VVE-----------SDNVKILKET-LGVCHLKIHALEVAD  816 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~------i~~-----------~~~~~~~~~~-~~~~~L~I~~~~~~D  816 (1075)
                      .+.+|++++|+|.++|..  .-.+.|+|.  |+.      |..           ..|+.+..+. ..+..|.|++++.+|
T Consensus        10 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~eD   89 (124)
T d1zvya1          10 SVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSED   89 (124)
T ss_dssp             ECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCCc
Confidence            477899999999999865  346899873  221      211           1366676543 357789999999999


Q ss_pred             CeEEEEEEEe
Q psy16863        817 QAEWKCIATN  826 (1075)
Q Consensus       817 ~G~Y~C~A~N  826 (1075)
                      ++.|.|.+..
T Consensus        90 tAvYYCAr~~   99 (124)
T d1zvya1          90 TAIYTCGATR   99 (124)
T ss_dssp             CEEEEEEECS
T ss_pred             ceEEEEeecc
Confidence            9999997754

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.64  E-value=0.0035  Score=52.31  Aligned_cols=69  Identities=16%  Similarity=0.194  Sum_probs=49.0

Q ss_pred             cCceeeccCCeEEEEEEEecCC--CcEEEEEE--CCEe------cCC-----------CCcEEEEEc--CCEEEEEEccc
Q psy16863        356 LHDIAVKVGTRARLLVEIRSPT--EIKIHWYR--NDRK------LEE-----------NKIYRTQHD--GNFYFIDLSSV  412 (1075)
Q Consensus       356 ~~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k--~g~~------l~~-----------~~~~~~~~~--g~~~~L~I~~v  412 (1075)
                      .....+++|++++|.|.++|..  .-.+.|+|  .|+.      |..           ..|+.+..+  .+...|.|.++
T Consensus         7 sg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L   86 (124)
T d2b1hh1           7 SGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSL   86 (124)
T ss_dssp             CCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeecc
Confidence            3445678999999999999854  34678987  2211      111           245555554  35678999999


Q ss_pred             CCCCceeEEEEE
Q psy16863        413 SLFDSGRWTCLA  424 (1075)
Q Consensus       413 ~~~d~G~Y~C~a  424 (1075)
                      +.+|++.|.|..
T Consensus        87 ~~eDTA~YYCAR   98 (124)
T d2b1hh1          87 KPSDTALYYCAR   98 (124)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccccceEEEEee
Confidence            999999999954

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.0059  Score=51.96  Aligned_cols=68  Identities=7%  Similarity=-0.017  Sum_probs=43.4

Q ss_pred             eeeccCCeEEEEEEEecCC--Cc-EEEEEECC-Ee---c------------CCCCc--EEEEEcCCEEEEEEcccCCCCc
Q psy16863        359 IAVKVGTRARLLVEIRSPT--EI-KIHWYRND-RK---L------------EENKI--YRTQHDGNFYFIDLSSVSLFDS  417 (1075)
Q Consensus       359 ~~v~~G~~v~l~C~~~g~p--~~-~v~W~k~g-~~---l------------~~~~~--~~~~~~g~~~~L~I~~v~~~d~  417 (1075)
                      ..+.+|+.++|.|..++..  .. .+.|++.- ..   +            ....+  ......++...|+|.+++.+|+
T Consensus        10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   89 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQT   89 (118)
T ss_dssp             EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGC
T ss_pred             cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccC
Confidence            3466799999999986532  22 33455521 11   1            00122  2333455667899999999999


Q ss_pred             eeEEEEEEe
Q psy16863        418 GRWTCLAEN  426 (1075)
Q Consensus       418 G~Y~C~a~n  426 (1075)
                      |.|.|.+..
T Consensus        90 avYyCa~~~   98 (118)
T d1yjdc1          90 DIYFCKIEV   98 (118)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEec
Confidence            999998754

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=96.62  E-value=0.0049  Score=50.99  Aligned_cols=69  Identities=22%  Similarity=0.302  Sum_probs=50.1

Q ss_pred             CceeeccCCeEEEEEEEecCCC---cEEEEEE--CCEec------CC----------CCcEEEEEc--CCEEEEEEcccC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPTE---IKIHWYR--NDRKL------EE----------NKIYRTQHD--GNFYFIDLSSVS  413 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p~---~~v~W~k--~g~~l------~~----------~~~~~~~~~--g~~~~L~I~~v~  413 (1075)
                      ....+++|++++|.|.++|..-   .-+.|+|  .|+-|      ..          ..|+.+..+  .+...|.|.+++
T Consensus         8 G~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~   87 (119)
T d1ncwh1           8 GPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVT   87 (119)
T ss_dssp             SCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccc
Confidence            4557889999999999998642   3578987  33322      11          235666653  466789999999


Q ss_pred             CCCceeEEEEEE
Q psy16863        414 LFDSGRWTCLAE  425 (1075)
Q Consensus       414 ~~d~G~Y~C~a~  425 (1075)
                      .+|++.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (119)
T d1ncwh1          88 TEDTATYYCAGL   99 (119)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCCceEEEEeEe
Confidence            999999999644

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.62  E-value=0.002  Score=53.23  Aligned_cols=67  Identities=12%  Similarity=0.250  Sum_probs=42.4

Q ss_pred             cCCeEEEEEEEec-CC-CcEEEEEECCEecCCCCc--EEEEEcCCEE---EEEEcccCCCCceeEEEEEEeCCC
Q psy16863        363 VGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKI--YRTQHDGNFY---FIDLSSVSLFDSGRWTCLAENAVG  429 (1075)
Q Consensus       363 ~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~--~~~~~~g~~~---~L~I~~v~~~d~G~Y~C~a~n~~g  429 (1075)
                      .++.++|.|.+.| .| ...|+|++||........  .....+|...   .|.|..-.-.....|+|.+.+..-
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~l   91 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGL   91 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCCC
Confidence            5778999999987 34 679999999987543211  1122344433   455443222234589999998753

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.62  E-value=0.0064  Score=50.70  Aligned_cols=70  Identities=16%  Similarity=0.324  Sum_probs=50.4

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEec------CC-----------CCcEEEEEc--CCEEEEEEcccC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRKL------EE-----------NKIYRTQHD--GNFYFIDLSSVS  413 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~l------~~-----------~~~~~~~~~--g~~~~L~I~~v~  413 (1075)
                      ....+++|++++|.|.++|..  ...+.|+|.  |+.+      ..           ..|+.+..+  .+...|.|.+++
T Consensus         8 G~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~   87 (125)
T d1op3h1           8 GGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMR   87 (125)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccC
Confidence            345678999999999998843  446889872  2221      11           135666654  466789999999


Q ss_pred             CCCceeEEEEEEe
Q psy16863        414 LFDSGRWTCLAEN  426 (1075)
Q Consensus       414 ~~d~G~Y~C~a~n  426 (1075)
                      .+|++.|.|....
T Consensus        88 ~eDTAvYYCAr~~  100 (125)
T d1op3h1          88 VEDTAIYYCARKG  100 (125)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             CccceeEeEeecc
Confidence            9999999997643

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.61  E-value=0.0061  Score=49.92  Aligned_cols=67  Identities=13%  Similarity=0.234  Sum_probs=48.9

Q ss_pred             eeeecCCeEEEEEEEecCCC--CeEEEEEC--CEE------eec-----------CCcEEEEEee-CcEEEEEEccccCC
Q psy16863        758 CQATVNEEFKFTVQVSISPE--PKVSWFRD--DQQ------VVE-----------SDNVKILKET-LGVCHLKIHALEVA  815 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p~--p~v~W~k~--g~~------i~~-----------~~~~~~~~~~-~~~~~L~I~~~~~~  815 (1075)
                      ..+.+|++++|+|.++|...  --+.|+|-  |+.      |..           ..|+.+..+. .++..|.|++++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~~e   89 (116)
T d1mjuh1          10 ELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSD   89 (116)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccCCC
Confidence            45789999999999998653  36889872  321      211           1366776543 35778999999999


Q ss_pred             CCeEEEEEE
Q psy16863        816 DQAEWKCIA  824 (1075)
Q Consensus       816 D~G~Y~C~A  824 (1075)
                      |++.|.|..
T Consensus        90 DtAvYYCAr   98 (116)
T d1mjuh1          90 DSAVYYCAN   98 (116)
T ss_dssp             GCEEEEEEE
T ss_pred             CceEEEEcc
Confidence            999999964

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=96.61  E-value=0.0054  Score=50.76  Aligned_cols=67  Identities=15%  Similarity=0.303  Sum_probs=48.9

Q ss_pred             eeecCCeEEEEEEEecCCCC---eEEEEE--CCEEe------ec----------CCcEEEEEee-CcEEEEEEccccCCC
Q psy16863        759 QATVNEEFKFTVQVSISPEP---KVSWFR--DDQQV------VE----------SDNVKILKET-LGVCHLKIHALEVAD  816 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p~p---~v~W~k--~g~~i------~~----------~~~~~~~~~~-~~~~~L~I~~~~~~D  816 (1075)
                      .+.+|++++|+|.++|..-.   .+.|+|  .|+-+      ..          ..|+.+..+. .+...|.|.+++.+|
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~eD   90 (119)
T d1ncwh1          11 LVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTED   90 (119)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccCC
Confidence            47789999999999997643   468976  24322      11          1366776543 356789999999999


Q ss_pred             CeEEEEEEE
Q psy16863        817 QAEWKCIAT  825 (1075)
Q Consensus       817 ~G~Y~C~A~  825 (1075)
                      ++.|.|...
T Consensus        91 TAvYYCAr~   99 (119)
T d1ncwh1          91 TATYYCAGL   99 (119)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEeEe
Confidence            999999643

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.60  E-value=0.0061  Score=50.10  Aligned_cols=69  Identities=17%  Similarity=0.291  Sum_probs=50.0

Q ss_pred             eeeecCCeEEEEEEEecCC--CCeEEEEEC--CEE------ee-c----------CCcEEEEEee-CcEEEEEEccccCC
Q psy16863        758 CQATVNEEFKFTVQVSISP--EPKVSWFRD--DQQ------VV-E----------SDNVKILKET-LGVCHLKIHALEVA  815 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~------i~-~----------~~~~~~~~~~-~~~~~L~I~~~~~~  815 (1075)
                      ..+.+|++++|+|.++|..  .-.+.|+|.  |+.      |. .          ..|+.+..+. .++..|.|++++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~e   89 (117)
T d1jpth1          10 GLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAE   89 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCC
Confidence            3477899999999999865  346889873  221      21 1          1356666543 35778999999999


Q ss_pred             CCeEEEEEEEe
Q psy16863        816 DQAEWKCIATN  826 (1075)
Q Consensus       816 D~G~Y~C~A~N  826 (1075)
                      |++.|.|....
T Consensus        90 DTAvYYCAr~~  100 (117)
T d1jpth1          90 DTAVYYCARDT  100 (117)
T ss_dssp             GCEEEEEEEEC
T ss_pred             CceEEEEeecC
Confidence            99999996543

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.60  E-value=0.0059  Score=50.78  Aligned_cols=70  Identities=17%  Similarity=0.370  Sum_probs=50.0

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEe------cCC-----------CCcEEEEEc--CCEEEEEEcccC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRK------LEE-----------NKIYRTQHD--GNFYFIDLSSVS  413 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~------l~~-----------~~~~~~~~~--g~~~~L~I~~v~  413 (1075)
                      ....+++|++++|.|.++|..  .--+.|+|.  |+.      |..           ..|+.+..+  .+...|.|.+++
T Consensus         8 G~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~   87 (123)
T d1mqkh_           8 GGDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLK   87 (123)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeec
Confidence            345688999999999998854  346889872  221      111           135566543  456679999999


Q ss_pred             CCCceeEEEEEEe
Q psy16863        414 LFDSGRWTCLAEN  426 (1075)
Q Consensus       414 ~~d~G~Y~C~a~n  426 (1075)
                      .+|++.|.|....
T Consensus        88 ~eDtAvYYCAr~~  100 (123)
T d1mqkh_          88 SEDTAMYYCVRHE  100 (123)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cCcccceeEEecC
Confidence            9999999997654

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.59  E-value=0.0013  Score=54.42  Aligned_cols=66  Identities=15%  Similarity=0.207  Sum_probs=44.3

Q ss_pred             cCCeEEEEEEEecC-C-CCeEEEEECCEEeecCCcEEEEEeeCc----EEEEEEccccCCCCeEEEEEEEeC
Q psy16863        762 VNEEFKFTVQVSIS-P-EPKVSWFRDDQQVVESDNVKILKETLG----VCHLKIHALEVADQAEWKCIATND  827 (1075)
Q Consensus       762 ~g~~~~l~C~v~g~-p-~p~v~W~k~g~~i~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~  827 (1075)
                      .+..+.|.|.+.|. | ...|+|++||+++............+|    .+.|.|......+...|+|++.-.
T Consensus        18 ~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~   89 (102)
T d1i1ca2          18 TQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHE   89 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred             cCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeC
Confidence            35678999999985 4 458999999987643211111112222    345788777767777899999875

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.59  E-value=0.0077  Score=49.55  Aligned_cols=66  Identities=17%  Similarity=0.276  Sum_probs=48.6

Q ss_pred             eeecCCeEEEEEEEecCCC--CeEEEEEC--CEE------ee-c----------CCcEEEEEee-CcEEEEEEccccCCC
Q psy16863        759 QATVNEEFKFTVQVSISPE--PKVSWFRD--DQQ------VV-E----------SDNVKILKET-LGVCHLKIHALEVAD  816 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p~--p~v~W~k~--g~~------i~-~----------~~~~~~~~~~-~~~~~L~I~~~~~~D  816 (1075)
                      .+.+|++++|+|.++|..-  -.+.|+|-  |+-      |. .          ..|+.+..+. ..+..|.|++++.+|
T Consensus        11 ~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~eD   90 (117)
T d1jnhb1          11 LARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSED   90 (117)
T ss_dssp             ECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCCc
Confidence            4678999999999998653  36899872  221      21 1          1367776644 346789999999999


Q ss_pred             CeEEEEEE
Q psy16863        817 QAEWKCIA  824 (1075)
Q Consensus       817 ~G~Y~C~A  824 (1075)
                      ++.|.|..
T Consensus        91 TAvYYCAr   98 (117)
T d1jnhb1          91 SAVYSCSR   98 (117)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEee
Confidence            99999965

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.59  E-value=0.0076  Score=49.71  Aligned_cols=67  Identities=16%  Similarity=0.247  Sum_probs=47.9

Q ss_pred             eeeecCCeEEEEEEEecCC--CCeEEEEEC--CEEe------ec-----------CCcEEEEEee-CcEEEEEEccccCC
Q psy16863        758 CQATVNEEFKFTVQVSISP--EPKVSWFRD--DQQV------VE-----------SDNVKILKET-LGVCHLKIHALEVA  815 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~i------~~-----------~~~~~~~~~~-~~~~~L~I~~~~~~  815 (1075)
                      ..+.+|++++|+|.++|..  .--+.|+|.  |+-+      ..           ..|+.+..+. .....|.|++++.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~e   89 (117)
T d1mfah1          10 VVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTSE   89 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCCC
Confidence            3467899999999999864  346888772  3322      11           1256665543 34678999999999


Q ss_pred             CCeEEEEEE
Q psy16863        816 DQAEWKCIA  824 (1075)
Q Consensus       816 D~G~Y~C~A  824 (1075)
                      |++.|-|..
T Consensus        90 DtAvYYCAr   98 (117)
T d1mfah1          90 DSAVYYCTR   98 (117)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEec
Confidence            999999964

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.57  E-value=0.0073  Score=50.52  Aligned_cols=70  Identities=16%  Similarity=0.250  Sum_probs=50.1

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEE--CCEec------C-C----------CCcEEEEEc--CCEEEEEEcccC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYR--NDRKL------E-E----------NKIYRTQHD--GNFYFIDLSSVS  413 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k--~g~~l------~-~----------~~~~~~~~~--g~~~~L~I~~v~  413 (1075)
                      ....+++|++++|.|.++|..  ..-+.|+|  .|+.|      . .          ..|+.+..+  .+...|.|.+++
T Consensus         8 g~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~   87 (127)
T d2fx7h1           8 GAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLR   87 (127)
T ss_dssp             CCEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccC
Confidence            345678899999999998853  45688986  22211      1 1          245666654  456789999999


Q ss_pred             CCCceeEEEEEEe
Q psy16863        414 LFDSGRWTCLAEN  426 (1075)
Q Consensus       414 ~~d~G~Y~C~a~n  426 (1075)
                      .+|++.|.|....
T Consensus        88 ~eDTavYYCAR~~  100 (127)
T d2fx7h1          88 PEDTAVYYCAREG  100 (127)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccceEEEEeecc
Confidence            9999999998643

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.57  E-value=0.0089  Score=50.37  Aligned_cols=71  Identities=14%  Similarity=0.209  Sum_probs=51.0

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEE--CCEec------C-----------CCCcEEEEEc--CCEEEEEEcccC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYR--NDRKL------E-----------ENKIYRTQHD--GNFYFIDLSSVS  413 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k--~g~~l------~-----------~~~~~~~~~~--g~~~~L~I~~v~  413 (1075)
                      ....+++|++++|.|.++|..  .-.+.|+|  .|+.|      .           -..|+.+..+  .+...|.+.+++
T Consensus         7 G~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~   86 (133)
T d1rzfh1           7 GAEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLR   86 (133)
T ss_dssp             CCEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCC
Confidence            445688999999999998754  45788887  22211      1           1246666655  456789999999


Q ss_pred             CCCceeEEEEEEeC
Q psy16863        414 LFDSGRWTCLAENA  427 (1075)
Q Consensus       414 ~~d~G~Y~C~a~n~  427 (1075)
                      .+|++.|.|.....
T Consensus        87 ~eDtA~YYCAr~~~  100 (133)
T d1rzfh1          87 SDDTAVYYCASNSI  100 (133)
T ss_dssp             GGGCEEEEEEEEEC
T ss_pred             CCCCEEEEeeeccC
Confidence            99999999976443

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.0052  Score=51.15  Aligned_cols=68  Identities=13%  Similarity=0.184  Sum_probs=43.9

Q ss_pred             cCCeEEEEEEEec-CC-CcEEEEEECCEecCCCCcEEEE----EcCCE---EEEEEcccCCCCceeEEEEEEeCCCc
Q psy16863        363 VGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKIYRTQ----HDGNF---YFIDLSSVSLFDSGRWTCLAENAVGR  430 (1075)
Q Consensus       363 ~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~~~~~----~~g~~---~~L~I~~v~~~d~G~Y~C~a~n~~g~  430 (1075)
                      .++.++|.|.+.| .| ...|+|++||..+.........    .+|..   +.|.|..-.-.....|+|.+.+....
T Consensus        19 ~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~~~   95 (107)
T d1c5cl2          19 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS   95 (107)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             cCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCCC
Confidence            4678999999987 34 5799999999987654322111    23433   25555443323344899999997544

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.56  E-value=0.007  Score=49.90  Aligned_cols=66  Identities=11%  Similarity=0.185  Sum_probs=48.2

Q ss_pred             eeeecCCeEEEEEEEecCCCC--eEEEEEC--CEE------eec-----------CCcEEEEEee-CcEEEEEEccccCC
Q psy16863        758 CQATVNEEFKFTVQVSISPEP--KVSWFRD--DQQ------VVE-----------SDNVKILKET-LGVCHLKIHALEVA  815 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p~p--~v~W~k~--g~~------i~~-----------~~~~~~~~~~-~~~~~L~I~~~~~~  815 (1075)
                      ..+++|++++|+|.++|..--  .+.|+|.  |+.      |..           ..|+.+..+. .++..|.|++++.+
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~e   89 (118)
T d2jelh1          10 ELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTSE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccccC
Confidence            347799999999999987633  6899872  321      111           1366666543 45678999999999


Q ss_pred             CCeEEEEE
Q psy16863        816 DQAEWKCI  823 (1075)
Q Consensus       816 D~G~Y~C~  823 (1075)
                      |++.|.|.
T Consensus        90 DTAvYYCA   97 (118)
T d2jelh1          90 DSAIYYCA   97 (118)
T ss_dssp             GCEEEEEE
T ss_pred             cceeeeEE
Confidence            99999994

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.53  E-value=0.0096  Score=49.13  Aligned_cols=69  Identities=22%  Similarity=0.312  Sum_probs=49.8

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEec------C-C----------CCcEEEEEc--CCEEEEEEcccC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRKL------E-E----------NKIYRTQHD--GNFYFIDLSSVS  413 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~l------~-~----------~~~~~~~~~--g~~~~L~I~~v~  413 (1075)
                      ....+++|++++|.|.++|..  ..-+.|+|.  |+.|      . .          ..|+.+..+  .+...|.|.+++
T Consensus         8 g~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~   87 (120)
T d1ad9b1           8 GAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLR   87 (120)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccC
Confidence            445688999999999998854  457889872  2211      1 1          145555544  466789999999


Q ss_pred             CCCceeEEEEEE
Q psy16863        414 LFDSGRWTCLAE  425 (1075)
Q Consensus       414 ~~d~G~Y~C~a~  425 (1075)
                      .+|++.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (120)
T d1ad9b1          88 SEDTAFYFCARE   99 (120)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEEEc
Confidence            999999999753

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.53  E-value=0.004  Score=51.02  Aligned_cols=66  Identities=17%  Similarity=0.327  Sum_probs=48.4

Q ss_pred             eeecCCeEEEEEEEecCC--CCeEEEEEC--CEE------eec-----------CCcEEEEEee-CcEEEEEEccccCCC
Q psy16863        759 QATVNEEFKFTVQVSISP--EPKVSWFRD--DQQ------VVE-----------SDNVKILKET-LGVCHLKIHALEVAD  816 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~------i~~-----------~~~~~~~~~~-~~~~~L~I~~~~~~D  816 (1075)
                      .+.+|++++|+|.++|..  .-.+.|+|-  |+-      |..           ..|+.+..+. ..+..|.|++++.+|
T Consensus        11 ~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~eD   90 (114)
T d1indh1          11 SVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSED   90 (114)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccCc
Confidence            477999999999999865  346889873  221      211           1366676543 346789999999999


Q ss_pred             CeEEEEEE
Q psy16863        817 QAEWKCIA  824 (1075)
Q Consensus       817 ~G~Y~C~A  824 (1075)
                      ++.|.|..
T Consensus        91 tAvYYCA~   98 (114)
T d1indh1          91 TALYFCAS   98 (114)
T ss_dssp             CEEEEEEC
T ss_pred             ccEEEECC
Confidence            99999964

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.53  E-value=0.0018  Score=53.55  Aligned_cols=68  Identities=16%  Similarity=0.255  Sum_probs=43.0

Q ss_pred             cCCeEEEEEEEec-CCCCceEEEEeCCeEEecCCcEEEEEcCCceE----EEEEeeeeecCCceEEEEEECCC
Q psy16863        564 IGTSAILECQVLV-PPWPRSIYWYNKEGVVEASDKYHIMADGLGGY----SIEINYLEAVDDGEWKCVATSSS  631 (1075)
Q Consensus       564 ~G~~~~L~C~~~~-~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~  631 (1075)
                      .++.++|.|.+.+ .|....|+|.++|.............++.+.|    .|.|..-.......|+|.+.+..
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            4778999999998 46667999999987643211111111222222    45565444455677999999865

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.52  E-value=0.0059  Score=50.98  Aligned_cols=69  Identities=14%  Similarity=0.325  Sum_probs=50.0

Q ss_pred             eeecCCeEEEEEEEecCC--CCeEEEEEC--CEE------ee-c----------CCcEEEEEee-CcEEEEEEccccCCC
Q psy16863        759 QATVNEEFKFTVQVSISP--EPKVSWFRD--DQQ------VV-E----------SDNVKILKET-LGVCHLKIHALEVAD  816 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~------i~-~----------~~~~~~~~~~-~~~~~L~I~~~~~~D  816 (1075)
                      .+.+|++++|+|.++|..  .-.+.|+|.  |+.      |. .          ..|+.+..+. ..+..|.|.+++.+|
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~eD   90 (126)
T d1dfbh1          11 LVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAED   90 (126)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccCc
Confidence            467899999999999865  336889873  221      21 1          1356666543 356789999999999


Q ss_pred             CeEEEEEEEeC
Q psy16863        817 QAEWKCIATND  827 (1075)
Q Consensus       817 ~G~Y~C~A~N~  827 (1075)
                      ++.|.|.....
T Consensus        91 tavYYCAr~~~  101 (126)
T d1dfbh1          91 MALYYCVKGRD  101 (126)
T ss_dssp             CEEEEEEEEEC
T ss_pred             ceEEEEEeccC
Confidence            99999976543

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.52  E-value=0.0079  Score=50.75  Aligned_cols=68  Identities=16%  Similarity=0.307  Sum_probs=48.5

Q ss_pred             ceeeccCCeEEEEEEEecCC----CcEEEEEEC--CEec--------------CC--CCcEEEEEc--CCEEEEEEcccC
Q psy16863        358 DIAVKVGTRARLLVEIRSPT----EIKIHWYRN--DRKL--------------EE--NKIYRTQHD--GNFYFIDLSSVS  413 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~~g~p----~~~v~W~k~--g~~l--------------~~--~~~~~~~~~--g~~~~L~I~~v~  413 (1075)
                      ...+++|++++|.|.++|..    ..-+.|+|.  |+.+              .+  ..|+.+..+  .+...|.|.+++
T Consensus         9 ~~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~   88 (126)
T d1etzb1           9 PGILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVD   88 (126)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceeccc
Confidence            45688899999999998742    346789862  2221              01  235666554  456789999999


Q ss_pred             CCCceeEEEEEE
Q psy16863        414 LFDSGRWTCLAE  425 (1075)
Q Consensus       414 ~~d~G~Y~C~a~  425 (1075)
                      .+|++.|.|...
T Consensus        89 ~eDtAvYyCAr~  100 (126)
T d1etzb1          89 TSDTATYHCARR  100 (126)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             ccccceEEEEEe
Confidence            999999999853

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.52  E-value=0.0069  Score=50.08  Aligned_cols=67  Identities=13%  Similarity=0.277  Sum_probs=48.8

Q ss_pred             eeecCCeEEEEEEEecCC--CCeEEEEEC--CEEee------c-------------CCcEEEEEee-CcEEEEEEccccC
Q psy16863        759 QATVNEEFKFTVQVSISP--EPKVSWFRD--DQQVV------E-------------SDNVKILKET-LGVCHLKIHALEV  814 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~i~------~-------------~~~~~~~~~~-~~~~~L~I~~~~~  814 (1075)
                      .+.+|++++|+|.++|..  .-.+.|+|.  |+-+.      .             ..|+.+..+. .++..|.|++++.
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~~   90 (120)
T d1dlfh_          11 LVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLRA   90 (120)
T ss_dssp             EECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeeccC
Confidence            367899999999999864  347899872  33221      1             1366676543 3467899999999


Q ss_pred             CCCeEEEEEEE
Q psy16863        815 ADQAEWKCIAT  825 (1075)
Q Consensus       815 ~D~G~Y~C~A~  825 (1075)
                      +|++.|.|...
T Consensus        91 eDtAvYYCA~~  101 (120)
T d1dlfh_          91 EDTGIYYCTGI  101 (120)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCceEEEeeEe
Confidence            99999999654

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.52  E-value=0.0064  Score=51.00  Aligned_cols=70  Identities=17%  Similarity=0.317  Sum_probs=50.0

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEe------cCC-----------CCcEEEEEc--CCEEEEEEcccC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRK------LEE-----------NKIYRTQHD--GNFYFIDLSSVS  413 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~------l~~-----------~~~~~~~~~--g~~~~L~I~~v~  413 (1075)
                      ....+++|++++|.|.++|..  ..-+.|+|.  |+.      |..           ..|+.+..+  .+...|+|.+++
T Consensus         8 G~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~   87 (127)
T d2fb4h1           8 GGGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLR   87 (127)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeee
Confidence            345678999999999998853  447888872  221      111           135566554  466789999999


Q ss_pred             CCCceeEEEEEEe
Q psy16863        414 LFDSGRWTCLAEN  426 (1075)
Q Consensus       414 ~~d~G~Y~C~a~n  426 (1075)
                      .+|++.|.|....
T Consensus        88 ~eDTA~YYCAr~~  100 (127)
T d2fb4h1          88 PEDTGVYFCARDG  100 (127)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ecceeEEEEEEec
Confidence            9999999997643

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.51  E-value=0.0076  Score=50.83  Aligned_cols=70  Identities=19%  Similarity=0.342  Sum_probs=50.5

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEe---c--------C---------C--CCcEEEEE--cCCEEEEE
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRK---L--------E---------E--NKIYRTQH--DGNFYFID  408 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~---l--------~---------~--~~~~~~~~--~g~~~~L~  408 (1075)
                      ....+++|++++|.|.++|..  .-.+.|+|.  |+.   |        .         +  ..|+.+..  ..+...|+
T Consensus         8 G~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~   87 (127)
T d1i3ua_           8 GGGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQ   87 (127)
T ss_dssp             SCEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEE
T ss_pred             CCceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEe
Confidence            345678999999999998853  458899973  211   1        0         0  13555554  34667899


Q ss_pred             EcccCCCCceeEEEEEEe
Q psy16863        409 LSSVSLFDSGRWTCLAEN  426 (1075)
Q Consensus       409 I~~v~~~d~G~Y~C~a~n  426 (1075)
                      |.+++.+|++.|.|....
T Consensus        88 i~~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          88 MNSLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             ECSCCGGGCEEEEEEEES
T ss_pred             eecccccceeEEEEEEEe
Confidence            999999999999998753

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.0046  Score=51.18  Aligned_cols=85  Identities=14%  Similarity=0.146  Sum_probs=47.0

Q ss_pred             CCeeeeeccceEeecCCeEEEEEEEec-CCCCceEEEEeCCeEEecCCcE--EEEEcCCc--eEEEEEeeeeec--CCce
Q psy16863        550 APIFIKEVENVKAKIGTSAILECQVLV-PPWPRSIYWYNKEGVVEASDKY--HIMADGLG--GYSIEINYLEAV--DDGE  622 (1075)
Q Consensus       550 ~~~~~~~~~~~~v~~G~~~~L~C~~~~-~p~p~~v~W~~~~~~i~~~~~~--~~~~~~~~--~~~L~i~~~~~~--d~G~  622 (1075)
                      |..++..+..........++|.|.+.+ .|....|+|.++++.+......  ....+|..  ...|+|..-+..  ....
T Consensus         6 P~V~~l~p~~~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~   85 (105)
T d1dn0b2           6 PTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEH   85 (105)
T ss_dssp             CEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCE
T ss_pred             CeEEeECCCccccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCE
Confidence            444444444444555788999999998 5666799999998766432110  11223311  123555433332  2247


Q ss_pred             EEEEEECCCCce
Q psy16863        623 WKCVATSSSGVK  634 (1075)
Q Consensus       623 Y~C~a~n~~g~~  634 (1075)
                      |+|.+.+..+..
T Consensus        86 ytC~V~H~~~~~   97 (105)
T d1dn0b2          86 VVCKVQHPNGNK   97 (105)
T ss_dssp             EEEEEECTTCCE
T ss_pred             EEEEEEECCCCE
Confidence            999999987653

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.51  E-value=0.0017  Score=52.67  Aligned_cols=65  Identities=17%  Similarity=0.385  Sum_probs=45.4

Q ss_pred             eeccCCeEEEEEEEecCC--CcEEEEEEC--CEec------C--------C--CCcEEEEEc--CCEEEEEEcccCCCCc
Q psy16863        360 AVKVGTRARLLVEIRSPT--EIKIHWYRN--DRKL------E--------E--NKIYRTQHD--GNFYFIDLSSVSLFDS  417 (1075)
Q Consensus       360 ~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~l------~--------~--~~~~~~~~~--g~~~~L~I~~v~~~d~  417 (1075)
                      .+++|++++|.|.++|..  ...+.|+|.  |+.+      .        +  ..|+.+..+  .+...|.|.+++.+|+
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence            467899999999997742  446789873  2211      1        1  135666654  3556799999999999


Q ss_pred             eeEEEEE
Q psy16863        418 GRWTCLA  424 (1075)
Q Consensus       418 G~Y~C~a  424 (1075)
                      +.|.|..
T Consensus        84 AvYyCA~   90 (107)
T d1sjva_          84 AVYYCYT   90 (107)
T ss_dssp             SEEEEEE
T ss_pred             eeeeEec
Confidence            9999964

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.51  E-value=0.01  Score=49.46  Aligned_cols=68  Identities=16%  Similarity=0.253  Sum_probs=49.3

Q ss_pred             eeeecCCeEEEEEEEecCC--CCeEEEEEC--CEEe------ec-----------CCcEEEEEee-CcEEEEEEccccCC
Q psy16863        758 CQATVNEEFKFTVQVSISP--EPKVSWFRD--DQQV------VE-----------SDNVKILKET-LGVCHLKIHALEVA  815 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~i------~~-----------~~~~~~~~~~-~~~~~L~I~~~~~~  815 (1075)
                      ..+++|++++|+|.++|..  .--+.|+|-  |+.+      ..           ..|+.+..+. ..+..|.|++++.+
T Consensus        10 ~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~e   89 (121)
T d1j05b_          10 ELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSE   89 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCcC
Confidence            3478999999999999854  346889873  3211      11           1366666543 34678999999999


Q ss_pred             CCeEEEEEEE
Q psy16863        816 DQAEWKCIAT  825 (1075)
Q Consensus       816 D~G~Y~C~A~  825 (1075)
                      |++.|.|...
T Consensus        90 DtAvYYCAr~   99 (121)
T d1j05b_          90 DTAVYYCAPF   99 (121)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEeEee
Confidence            9999999764

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.51  E-value=0.0088  Score=47.61  Aligned_cols=68  Identities=12%  Similarity=0.113  Sum_probs=44.1

Q ss_pred             cCCeEEEEEEEecC-CCCceEEEEeCCeEEecCCcE-EEEEcCCceEEEE-EeeeeecCCceEEEEEECCC
Q psy16863        564 IGTSAILECQVLVP-PWPRSIYWYNKEGVVEASDKY-HIMADGLGGYSIE-INYLEAVDDGEWKCVATSSS  631 (1075)
Q Consensus       564 ~G~~~~L~C~~~~~-p~p~~v~W~~~~~~i~~~~~~-~~~~~~~~~~~L~-i~~~~~~d~G~Y~C~a~n~~  631 (1075)
                      .++.++|.|.+.+. |....|+|+++|..+..+... ....++.+.+... .-.+...+...|+|.+.+..
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~ytC~V~H~~   84 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYYTCHVYHQG   84 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEESSTTTTCEEEEECSS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecCcCCCEEEEEEEECC
Confidence            36789999999984 555689999999887644322 1234444443321 12334556667999998764

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=96.50  E-value=0.0051  Score=51.21  Aligned_cols=67  Identities=16%  Similarity=0.223  Sum_probs=48.5

Q ss_pred             eeecCCeEEEEEEEecCCC----CeEEEEEC--CEEe------ec----------CCcEEEEEee-CcEEEEEEccccCC
Q psy16863        759 QATVNEEFKFTVQVSISPE----PKVSWFRD--DQQV------VE----------SDNVKILKET-LGVCHLKIHALEVA  815 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p~----p~v~W~k~--g~~i------~~----------~~~~~~~~~~-~~~~~L~I~~~~~~  815 (1075)
                      .+.+|++++|+|.++|...    --+.|+|-  |+.+      ..          ..|+.+..+. .+...|.|.+++.+
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~e   90 (120)
T d1ai1h1          11 VIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTNE   90 (120)
T ss_dssp             EECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCGG
T ss_pred             eECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeecc
Confidence            4678999999999998642    25789873  3222      21          1467776543 34678999999999


Q ss_pred             CCeEEEEEEE
Q psy16863        816 DQAEWKCIAT  825 (1075)
Q Consensus       816 D~G~Y~C~A~  825 (1075)
                      |++.|-|...
T Consensus        91 DtAvYYCAr~  100 (120)
T d1ai1h1          91 DTAMYYCSRE  100 (120)
T ss_dssp             GCEEEEEEEE
T ss_pred             ceeEEEEEec
Confidence            9999999654

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.50  E-value=0.0004  Score=57.89  Aligned_cols=68  Identities=12%  Similarity=0.208  Sum_probs=43.4

Q ss_pred             cCCeEEEEEEEec-CC-CcEEEEEECCEecCCCCcE--EEEEcCCEEEEEEcccCC---CCceeEEEEEEeCCCc
Q psy16863        363 VGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKIY--RTQHDGNFYFIDLSSVSL---FDSGRWTCLAENAVGR  430 (1075)
Q Consensus       363 ~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~~--~~~~~g~~~~L~I~~v~~---~d~G~Y~C~a~n~~g~  430 (1075)
                      .+..++|.|.+.| .| ...|+|++||..+......  ....++......+..+..   .+...|+|.+.+....
T Consensus        19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~~   93 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET   93 (104)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCCc
Confidence            4677999999987 44 5699999999988643221  122344433223333332   3455899999998644

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.50  E-value=0.0054  Score=51.31  Aligned_cols=67  Identities=21%  Similarity=0.320  Sum_probs=47.3

Q ss_pred             eeecCCeEEEEEEEecCCC----CeEEEEEC--CEEe------ec----------CCcEEEEEee-CcEEEEEEccccCC
Q psy16863        759 QATVNEEFKFTVQVSISPE----PKVSWFRD--DQQV------VE----------SDNVKILKET-LGVCHLKIHALEVA  815 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p~----p~v~W~k~--g~~i------~~----------~~~~~~~~~~-~~~~~L~I~~~~~~  815 (1075)
                      .+.+|++++|+|.++|..-    --+.|+|.  |+.+      ..          ..|+.+..+. .+...|.|++++.+
T Consensus        11 ~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~e   90 (123)
T d1r0ah1          11 IVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVETA   90 (123)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecccc
Confidence            4678999999999998532    24689872  3211      11          1356666543 34678999999999


Q ss_pred             CCeEEEEEEE
Q psy16863        816 DQAEWKCIAT  825 (1075)
Q Consensus       816 D~G~Y~C~A~  825 (1075)
                      |++.|-|...
T Consensus        91 DsAvYyCAr~  100 (123)
T d1r0ah1          91 DTAIYYCAQS  100 (123)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEeeccc
Confidence            9999999753

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0053  Score=49.08  Aligned_cols=78  Identities=17%  Similarity=0.053  Sum_probs=51.7

Q ss_pred             ecceeEEeeCCeEEEEEEecCCCeeEEEEccCCCeeE-EEeeCCCceeccC-cEEEEecCCeEEEEEceeccCCCeEEEE
Q psy16863        141 RLHDIAVKVGTRARLLVEIRSPTEIKCQFDLNNTIPF-SFRAQGDHPIFGN-RFRAINRDGRTELNIRRVRRDDGGRYSV  218 (1075)
Q Consensus       141 ~~~~~~v~~G~~~~l~c~~~~~~~~~c~~~~~~~~~~-~W~~~~~~~~~~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~C  218 (1075)
                      .++-+.+.+|+.+.+.|.++.|.           +.+ .|.++++.+...+ .+..-...   -++|++++..|+|.|.|
T Consensus        11 ~p~~V~v~eg~~~vIPC~vT~P~-----------~~VtL~~~~~~~~~p~g~~v~~Dpk~---Gf~I~~~~~~~~g~y~C   76 (95)
T d1fltx_          11 IPEIIHMTEGRELVIPCRVTSPN-----------ITVTLKKFPLDTLIPDGKRIIWDSRK---GFIISNATYKEIGLLTC   76 (95)
T ss_dssp             SCEEEEECTTSCEEECCCBSCTT-----------SCCEEEETTTEEECCCSSSEEEETTT---EEEESSCCGGGCEEEEE
T ss_pred             CCCEEEEeCCCCEEEEccCCCCC-----------ceeEEEeccCCccCCCCCEEEECCCC---CEEEeCCCcccCeEEEE
Confidence            34567789999999999998764           332 3555565554433 33222222   48999999999999999


Q ss_pred             EEEcCceeEEEEEEE
Q psy16863        219 TASNESGYSTAKFEL  233 (1075)
Q Consensus       219 ~a~n~~g~~~~~~~l  233 (1075)
                      .|.... ....+..|
T Consensus        77 ~a~~~g-~~~~S~yl   90 (95)
T d1fltx_          77 EATVNG-HLYKTNYL   90 (95)
T ss_dssp             EEEETT-EEEEEEEE
T ss_pred             EEEECC-EEEEEEEE
Confidence            997663 33333333

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.49  E-value=0.0063  Score=50.58  Aligned_cols=70  Identities=17%  Similarity=0.356  Sum_probs=50.3

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEec------C-----------C--CCcEEEEEc--CCEEEEEEcc
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRKL------E-----------E--NKIYRTQHD--GNFYFIDLSS  411 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~l------~-----------~--~~~~~~~~~--g~~~~L~I~~  411 (1075)
                      ....+++|++++|.|.++|..  ...+.|+|.  |+.+      .           +  ..|+.+..+  .+...|+|.+
T Consensus         8 g~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~s   87 (122)
T d1q9rb1           8 GGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNT   87 (122)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceee
Confidence            345788999999999998854  346899973  3221      1           0  135566543  4567899999


Q ss_pred             cCCCCceeEEEEEEe
Q psy16863        412 VSLFDSGRWTCLAEN  426 (1075)
Q Consensus       412 v~~~d~G~Y~C~a~n  426 (1075)
                      ++.+|++.|.|....
T Consensus        88 L~~eDTAvYYCar~~  102 (122)
T d1q9rb1          88 LRAEDSATYYCARDH  102 (122)
T ss_dssp             CCGGGCEEEEEEECC
T ss_pred             eccCcceEEEEEecC
Confidence            999999999998643

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.49  E-value=0.0073  Score=48.96  Aligned_cols=69  Identities=14%  Similarity=0.282  Sum_probs=50.0

Q ss_pred             eeeecCCeEEEEEEEecCCC--CeEEEEEC--CEE------eec-------------CCcEEEEEee-CcEEEEEEcccc
Q psy16863        758 CQATVNEEFKFTVQVSISPE--PKVSWFRD--DQQ------VVE-------------SDNVKILKET-LGVCHLKIHALE  813 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p~--p~v~W~k~--g~~------i~~-------------~~~~~~~~~~-~~~~~L~I~~~~  813 (1075)
                      ..+.+|++++|+|.++|..-  --+.|+|-  |+.      |..             ..|+.+..+. ..+..|.|++++
T Consensus        10 ~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL~   89 (109)
T d2ck0h1          10 GLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNLK   89 (109)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCCC
Confidence            34789999999999998653  36899872  321      111             1266776643 456789999999


Q ss_pred             CCCCeEEEEEEEe
Q psy16863        814 VADQAEWKCIATN  826 (1075)
Q Consensus       814 ~~D~G~Y~C~A~N  826 (1075)
                      .+|++.|-|...+
T Consensus        90 ~eDTAvYYCAr~~  102 (109)
T d2ck0h1          90 TEDTGIYYCVRGR  102 (109)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             HhHCEEEEEEEcC
Confidence            9999999997543

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.49  E-value=0.0053  Score=51.81  Aligned_cols=68  Identities=16%  Similarity=0.394  Sum_probs=49.4

Q ss_pred             eeecCCeEEEEEEEecCC--CCeEEEEEC--CEE------ee-----c-----------CCcEEEEEee-CcEEEEEEcc
Q psy16863        759 QATVNEEFKFTVQVSISP--EPKVSWFRD--DQQ------VV-----E-----------SDNVKILKET-LGVCHLKIHA  811 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~------i~-----~-----------~~~~~~~~~~-~~~~~L~I~~  811 (1075)
                      .+.+|++++|+|.++|..  .-.+.|+|.  |+.      |.     .           ..|+.+..+. ..+..|+|++
T Consensus        11 lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~~   90 (127)
T d1i3ua_          11 LVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMNS   90 (127)
T ss_dssp             ECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeeec
Confidence            467899999999999864  346889873  211      11     0           1367666543 3577899999


Q ss_pred             ccCCCCeEEEEEEEe
Q psy16863        812 LEVADQAEWKCIATN  826 (1075)
Q Consensus       812 ~~~~D~G~Y~C~A~N  826 (1075)
                      ++.+|++.|-|.+.-
T Consensus        91 l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          91 LKPEDTAVYYCAAKT  105 (127)
T ss_dssp             CCGGGCEEEEEEEES
T ss_pred             ccccceeEEEEEEEe
Confidence            999999999998753

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.0017  Score=48.80  Aligned_cols=62  Identities=27%  Similarity=0.387  Sum_probs=41.4

Q ss_pred             CCCeEEEEEEEEccCCCeeEEEECCEE--cCCCCeeEEEECCCCceeeEEEEEEEEeCCeeEEEEEEEEEe
Q psy16863        860 EGGAVNLECKVIGVPQPTLKWFKDGRE--LKAGDIHKIISGEDGTCCLGIYTCEAHNCMGTTSSSAALLGF  928 (1075)
Q Consensus       860 ~g~~~~L~C~v~g~p~p~v~W~k~g~~--l~~~~~~~i~~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~  928 (1075)
                      .|+.+.|.|.-.-  .-.|.|.|||..  +..|....+...  ...|+|.|+|. .+  |+.-+...|++.
T Consensus        20 ~~~~V~L~C~t~e--E~~I~W~kd~~se~~~~GntltV~Vk--E~~~aGnYTCh-k~--g~~Lnht~lLih   83 (87)
T d3d85d1          20 PGEMVVLTCDTPE--EDGITWTLDQSSEVLGSGKTLTIQVK--EFGDAGQYTCH-KG--GEVLSHSLLLLH   83 (87)
T ss_dssp             CCEEEEEECSSSC--CSSCEEEETTCCCCCEESSEEEEEEC--SGGGCEEEEEE-ET--TEEEEEEEEEEE
T ss_pred             CccEEEEecCCCc--ccccEEeeCCccccccCCCEEEEEEE--eccCCcceeEe-CC--CcEeeeEEEEEE
Confidence            4678999995422  235999999664  355666666553  34568999996 33  777665555554

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.48  E-value=0.0031  Score=52.19  Aligned_cols=69  Identities=14%  Similarity=0.303  Sum_probs=49.3

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEE--CCEec------C---C----------CCcEEEEEc--CCEEEEEEcc
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYR--NDRKL------E---E----------NKIYRTQHD--GNFYFIDLSS  411 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k--~g~~l------~---~----------~~~~~~~~~--g~~~~L~I~~  411 (1075)
                      ....+++|++++|.|.++|..  ...+.|+|  .|+.|      .   .          ..|+.+..+  .+...|.|.+
T Consensus         8 G~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~   87 (121)
T d1nfdf1           8 GGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNR   87 (121)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEES
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceecc
Confidence            456789999999999998854  34778998  33221      1   1          124444443  4566799999


Q ss_pred             cCCCCceeEEEEEE
Q psy16863        412 VSLFDSGRWTCLAE  425 (1075)
Q Consensus       412 v~~~d~G~Y~C~a~  425 (1075)
                      ++.+|++.|.|...
T Consensus        88 L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          88 LRVDDTAIYYCTRA  101 (121)
T ss_dssp             CCGGGCEECEEEEE
T ss_pred             cCCCcceEEEEecc
Confidence            99999999999753

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.48  E-value=0.0079  Score=50.75  Aligned_cols=67  Identities=19%  Similarity=0.319  Sum_probs=47.8

Q ss_pred             eeecCCeEEEEEEEecCC----CCeEEEEEC--CEEe------ec----------CCcEEEEEee-CcEEEEEEccccCC
Q psy16863        759 QATVNEEFKFTVQVSISP----EPKVSWFRD--DQQV------VE----------SDNVKILKET-LGVCHLKIHALEVA  815 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p----~p~v~W~k~--g~~i------~~----------~~~~~~~~~~-~~~~~L~I~~~~~~  815 (1075)
                      .+.+|++++|+|.++|..    ...+.|+|-  |+.+      ..          ..|+.+..+. ..+..|.|++++.+
T Consensus        11 lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~e   90 (126)
T d1etzb1          11 ILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDTS   90 (126)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceeccccc
Confidence            467899999999999853    225679862  2211      11          1367776653 34678999999999


Q ss_pred             CCeEEEEEEE
Q psy16863        816 DQAEWKCIAT  825 (1075)
Q Consensus       816 D~G~Y~C~A~  825 (1075)
                      |++.|.|...
T Consensus        91 DtAvYyCAr~  100 (126)
T d1etzb1          91 DTATYHCARR  100 (126)
T ss_dssp             GCEEEEEEEE
T ss_pred             ccceEEEEEe
Confidence            9999999854

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.45  E-value=0.0088  Score=50.82  Aligned_cols=68  Identities=18%  Similarity=0.263  Sum_probs=49.0

Q ss_pred             eeecCCeEEEEEEEecCCC----CeEEEEEC--CEEe------ec----------CCcEEEEEee-CcEEEEEEccccCC
Q psy16863        759 QATVNEEFKFTVQVSISPE----PKVSWFRD--DQQV------VE----------SDNVKILKET-LGVCHLKIHALEVA  815 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p~----p~v~W~k~--g~~i------~~----------~~~~~~~~~~-~~~~~L~I~~~~~~  815 (1075)
                      .+.+|++++|+|.++|...    .-+.|+|-  |+.+      ..          ..|+.+..+. .....|.|++++.+
T Consensus        11 ~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~e   90 (132)
T d1tjgh1          11 LVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSPV   90 (132)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCcc
Confidence            4778999999999998542    35889973  2211      10          2467776543 34678999999999


Q ss_pred             CCeEEEEEEEe
Q psy16863        816 DQAEWKCIATN  826 (1075)
Q Consensus       816 D~G~Y~C~A~N  826 (1075)
                      |++.|.|....
T Consensus        91 DtAvYYCAr~~  101 (132)
T d1tjgh1          91 DTATYFCAHRR  101 (132)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceEEEEEEec
Confidence            99999997654

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.43  E-value=0.0065  Score=50.64  Aligned_cols=68  Identities=15%  Similarity=0.247  Sum_probs=49.2

Q ss_pred             eeecCCeEEEEEEEecCC--CCeEEEEEC--CEE------ee-c----------CCcEEEEEee-CcEEEEEEccccCCC
Q psy16863        759 QATVNEEFKFTVQVSISP--EPKVSWFRD--DQQ------VV-E----------SDNVKILKET-LGVCHLKIHALEVAD  816 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~------i~-~----------~~~~~~~~~~-~~~~~L~I~~~~~~D  816 (1075)
                      .+.+|++++|+|.++|..  .-.+.|+|-  |+-      |. .          ..|+.+..+. ..+..|.|++++.+|
T Consensus        11 lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~eD   90 (122)
T d1bz7b1          11 LVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSED   90 (122)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecccC
Confidence            367899999999999865  336899872  221      11 1          1466666543 356789999999999


Q ss_pred             CeEEEEEEEe
Q psy16863        817 QAEWKCIATN  826 (1075)
Q Consensus       817 ~G~Y~C~A~N  826 (1075)
                      ++.|-|...+
T Consensus        91 TAvYYCAr~~  100 (122)
T d1bz7b1          91 TAIYYCTRGG  100 (122)
T ss_dssp             CEEEEEEEEC
T ss_pred             ceEEEeecCC
Confidence            9999997644

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=96.42  E-value=0.0035  Score=50.81  Aligned_cols=68  Identities=16%  Similarity=0.167  Sum_probs=43.9

Q ss_pred             cCCeEEEEEEEec-CCCCceEEEEeCCeEEecCCcEEEEEcCCceEEE-EEeeeeecCCceEEEEEECCC
Q psy16863        564 IGTSAILECQVLV-PPWPRSIYWYNKEGVVEASDKYHIMADGLGGYSI-EINYLEAVDDGEWKCVATSSS  631 (1075)
Q Consensus       564 ~G~~~~L~C~~~~-~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~~L-~i~~~~~~d~G~Y~C~a~n~~  631 (1075)
                      .++.++|.|.+.| .|....++|++++..+..........++.+.|.+ ..-.+..++...|+|.+.+..
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~s   84 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVADGEAAGLSCRVKHSS   84 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEEGGGCTTEEEEEEEGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEeCccCCEEEEEEEeCC
Confidence            4568999999998 4556699999988765432222223344444432 222344567778999999865

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.41  E-value=0.0053  Score=51.09  Aligned_cols=67  Identities=18%  Similarity=0.333  Sum_probs=48.9

Q ss_pred             eeecCCeEEEEEEEecCC--CCeEEEEEC--CEE------eec-----------CCcEEEEEee-CcEEEEEEccccCCC
Q psy16863        759 QATVNEEFKFTVQVSISP--EPKVSWFRD--DQQ------VVE-----------SDNVKILKET-LGVCHLKIHALEVAD  816 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~------i~~-----------~~~~~~~~~~-~~~~~L~I~~~~~~D  816 (1075)
                      .+++|++++|+|.++|..  .--+.|+|-  |+.      |..           ..|+.+..+. ..+..|.|++++.+|
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~eD   90 (121)
T d1ol0a_          11 LVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAED   90 (121)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeeccccc
Confidence            467899999999999864  235889873  221      211           1366776653 457789999999999


Q ss_pred             CeEEEEEEE
Q psy16863        817 QAEWKCIAT  825 (1075)
Q Consensus       817 ~G~Y~C~A~  825 (1075)
                      ++.|.|...
T Consensus        91 tAvYYCAr~   99 (121)
T d1ol0a_          91 TAVYYCARE   99 (121)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEEEEe
Confidence            999999654

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.41  E-value=0.014  Score=48.91  Aligned_cols=68  Identities=18%  Similarity=0.287  Sum_probs=49.7

Q ss_pred             eeecCCeEEEEEEEecCCCC--eEEEEEC--CEE------eec-----------CCcEEEEEee-CcEEEEEEccccCCC
Q psy16863        759 QATVNEEFKFTVQVSISPEP--KVSWFRD--DQQ------VVE-----------SDNVKILKET-LGVCHLKIHALEVAD  816 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p~p--~v~W~k~--g~~------i~~-----------~~~~~~~~~~-~~~~~L~I~~~~~~D  816 (1075)
                      .+.+|++++|+|.++|..--  .+.|+|-  |+-      |..           ..|+.+..+. .++..|.|.+++.+|
T Consensus        11 ~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~eD   90 (128)
T d2nxyd1          11 VKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSDD   90 (128)
T ss_dssp             EECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeeccccC
Confidence            47789999999999987543  5788762  211      111           1467776654 347789999999999


Q ss_pred             CeEEEEEEEe
Q psy16863        817 QAEWKCIATN  826 (1075)
Q Consensus       817 ~G~Y~C~A~N  826 (1075)
                      ++.|.|....
T Consensus        91 TA~YYCAr~~  100 (128)
T d2nxyd1          91 TAVYFCAGVY  100 (128)
T ss_dssp             CEEEEEEEEE
T ss_pred             ceEEEEeEEe
Confidence            9999998754

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.41  E-value=0.0025  Score=55.19  Aligned_cols=77  Identities=12%  Similarity=0.079  Sum_probs=47.4

Q ss_pred             eccceEeecCCeEEEEEEEec-CCCCceEEEEeCCeEEecCCcEE---EE---EcCCce----EEEEEeeeeecCCc-eE
Q psy16863        556 EVENVKAKIGTSAILECQVLV-PPWPRSIYWYNKEGVVEASDKYH---IM---ADGLGG----YSIEINYLEAVDDG-EW  623 (1075)
Q Consensus       556 ~~~~~~v~~G~~~~L~C~~~~-~p~p~~v~W~~~~~~i~~~~~~~---~~---~~~~~~----~~L~i~~~~~~d~G-~Y  623 (1075)
                      .+....+..+..++|.|.+.+ .|....|+|+++|..+.......   ..   ..+.+.    ..|.|..-...+.| .|
T Consensus        11 ~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W~~~g~~y   90 (127)
T d1ogae2          11 EPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHF   90 (127)
T ss_dssp             CCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEE
T ss_pred             CCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHhCCCCCEE
Confidence            333334455788999999998 45566899999998774321100   00   011122    25666655555666 59


Q ss_pred             EEEEECCCC
Q psy16863        624 KCVATSSSG  632 (1075)
Q Consensus       624 ~C~a~n~~g  632 (1075)
                      +|.+.+...
T Consensus        91 tC~V~H~~l   99 (127)
T d1ogae2          91 RCQVQFYGL   99 (127)
T ss_dssp             EEEEEECCB
T ss_pred             EEEEEECCC
Confidence            999998643

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.39  E-value=0.011  Score=49.52  Aligned_cols=69  Identities=12%  Similarity=0.217  Sum_probs=50.1

Q ss_pred             eeeecCCeEEEEEEEecCC--CCeEEEEEC--CEE------eec-----------CCcEEEEEee-CcEEEEEEccccCC
Q psy16863        758 CQATVNEEFKFTVQVSISP--EPKVSWFRD--DQQ------VVE-----------SDNVKILKET-LGVCHLKIHALEVA  815 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~------i~~-----------~~~~~~~~~~-~~~~~L~I~~~~~~  815 (1075)
                      ..+++|++++|+|.++|..  .--+.|+|.  |+-      |..           ..|+.+..+. .++..|.|++++.+
T Consensus         9 ~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~e   88 (130)
T d1rhhb1           9 EVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRSD   88 (130)
T ss_dssp             EEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCCC
Confidence            3477999999999999864  336899872  321      111           1366676543 34678999999999


Q ss_pred             CCeEEEEEEEe
Q psy16863        816 DQAEWKCIATN  826 (1075)
Q Consensus       816 D~G~Y~C~A~N  826 (1075)
                      |++.|.|....
T Consensus        89 DtAvYyCAr~~   99 (130)
T d1rhhb1          89 DTAVYYCARDF   99 (130)
T ss_dssp             GCEEEEEEEEC
T ss_pred             CcEEEEEEeec
Confidence            99999997654

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.37  E-value=0.0067  Score=50.87  Aligned_cols=68  Identities=19%  Similarity=0.359  Sum_probs=48.1

Q ss_pred             ceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEec------C-C----------CCcEEEEEc--CCEEEEEEcccCC
Q psy16863        358 DIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRKL------E-E----------NKIYRTQHD--GNFYFIDLSSVSL  414 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~l------~-~----------~~~~~~~~~--g~~~~L~I~~v~~  414 (1075)
                      ...+++|++++|.|.++|..  .-.+.|+|.  |+.|      . .          ..|+.+..+  .+...|.|.+++.
T Consensus         8 ~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~   87 (126)
T d1rjca1           8 GGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKP   87 (126)
T ss_dssp             CEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCc
Confidence            45678999999999998743  557899872  2221      1 1          135666654  3556799999999


Q ss_pred             CCceeEEEEEE
Q psy16863        415 FDSGRWTCLAE  425 (1075)
Q Consensus       415 ~d~G~Y~C~a~  425 (1075)
                      +|++.|.|...
T Consensus        88 eDTAvYYCAr~   98 (126)
T d1rjca1          88 EDTAMYYCAAD   98 (126)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccCceeEEEee
Confidence            99999999754

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.37  E-value=0.0075  Score=50.70  Aligned_cols=73  Identities=11%  Similarity=0.226  Sum_probs=47.9

Q ss_pred             eeeccceEeecCCeEEEEEEEecCCCCceEEEEeC--CeEE---e-------------cCCcEEEEEcCCceEEEEEeee
Q psy16863        554 IKEVENVKAKIGTSAILECQVLVPPWPRSIYWYNK--EGVV---E-------------ASDKYHIMADGLGGYSIEINYL  615 (1075)
Q Consensus       554 ~~~~~~~~v~~G~~~~L~C~~~~~p~p~~v~W~~~--~~~i---~-------------~~~~~~~~~~~~~~~~L~i~~~  615 (1075)
                      ...|....+.+|++++|.|........ .+.||+.  |+.+   .             ...++......  ...|.|..+
T Consensus         5 ~Q~P~~~~~~~G~~vtL~C~~~~~~~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~--~~~l~l~~~   81 (112)
T d1fo0b_           5 EQNPRWRLVPRGQAVNLRCILKNSQYP-WMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVT--DTELRLQVA   81 (112)
T ss_dssp             EEECSEEECCTTCCEEEEEEESCTTCC-EEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEE--TTEEEEEEE
T ss_pred             EeCCCeEEECCCCCEEEEEEEecCCCC-cEEEEeECCCCCccccceecccccccccccccccccccccc--ccEEEEecC
Confidence            344566778899999999998765544 7999974  2211   0             01122222111  236888889


Q ss_pred             eecCCceEEEEEEC
Q psy16863        616 EAVDDGEWKCVATS  629 (1075)
Q Consensus       616 ~~~d~G~Y~C~a~n  629 (1075)
                      ..+|++.|.|.+..
T Consensus        82 ~~~dsa~Y~Ca~~~   95 (112)
T d1fo0b_          82 NMSQGRTLYCTCSA   95 (112)
T ss_dssp             SCCSCEEEEEEEES
T ss_pred             CccCCccEEEEEec
Confidence            99999999998754

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.37  E-value=0.008  Score=49.94  Aligned_cols=68  Identities=16%  Similarity=0.307  Sum_probs=49.5

Q ss_pred             eeecCCeEEEEEEEecCCC--CeEEEEEC--CEE------eec-----------CCcEEEEEee-CcEEEEEEccccCCC
Q psy16863        759 QATVNEEFKFTVQVSISPE--PKVSWFRD--DQQ------VVE-----------SDNVKILKET-LGVCHLKIHALEVAD  816 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p~--p~v~W~k~--g~~------i~~-----------~~~~~~~~~~-~~~~~L~I~~~~~~D  816 (1075)
                      .+.+|++++|+|.++|..-  -.+.|+|-  |+.      |..           ..|+.+..+. .++..|.|++++.+|
T Consensus        11 lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~eD   90 (123)
T d1mqkh_          11 LVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSED   90 (123)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccCc
Confidence            4778999999999998653  35789872  321      211           1366776543 346789999999999


Q ss_pred             CeEEEEEEEe
Q psy16863        817 QAEWKCIATN  826 (1075)
Q Consensus       817 ~G~Y~C~A~N  826 (1075)
                      ++.|.|....
T Consensus        91 tAvYYCAr~~  100 (123)
T d1mqkh_          91 TAMYYCVRHE  100 (123)
T ss_dssp             CEEEEEEEEE
T ss_pred             ccceeEEecC
Confidence            9999997654

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.36  E-value=0.0087  Score=50.83  Aligned_cols=69  Identities=19%  Similarity=0.259  Sum_probs=49.4

Q ss_pred             ceeeccCCeEEEEEEEecCC----CcEEEEEEC--CEec------C----------CCCcEEEEEc--CCEEEEEEcccC
Q psy16863        358 DIAVKVGTRARLLVEIRSPT----EIKIHWYRN--DRKL------E----------ENKIYRTQHD--GNFYFIDLSSVS  413 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~~g~p----~~~v~W~k~--g~~l------~----------~~~~~~~~~~--g~~~~L~I~~v~  413 (1075)
                      ...+++|++++|.|.++|..    ..-+.|+|.  |+.+      .          -..|+.+..+  .+...|.|.+++
T Consensus         9 ~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~   88 (132)
T d1tjgh1           9 PPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVS   88 (132)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCC
Confidence            45688999999999998743    236889972  2221      0          0245556543  456789999999


Q ss_pred             CCCceeEEEEEEe
Q psy16863        414 LFDSGRWTCLAEN  426 (1075)
Q Consensus       414 ~~d~G~Y~C~a~n  426 (1075)
                      .+|++.|.|....
T Consensus        89 ~eDtAvYYCAr~~  101 (132)
T d1tjgh1          89 PVDTATYFCAHRR  101 (132)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cccceEEEEEEec
Confidence            9999999998653

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.35  E-value=0.0033  Score=52.38  Aligned_cols=76  Identities=13%  Similarity=0.145  Sum_probs=45.3

Q ss_pred             ccceEeecCCeEEEEEEEec-CCCCceEEEEeCCeEEecCCcEEEEEcCCceE----EEEEeeeeecCCceEEEEEECCC
Q psy16863        557 VENVKAKIGTSAILECQVLV-PPWPRSIYWYNKEGVVEASDKYHIMADGLGGY----SIEINYLEAVDDGEWKCVATSSS  631 (1075)
Q Consensus       557 ~~~~~v~~G~~~~L~C~~~~-~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~  631 (1075)
                      +....+..+..++|.|.+.+ .|....++|+++|..+.............+.+    .|+|..-..  ...|+|.+.+..
T Consensus        16 Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w--~~~ytC~V~H~s   93 (107)
T d1hxmb2          16 PSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL--DKEHRCIVRHEN   93 (107)
T ss_dssp             CCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG--GSCEEEEEEETT
T ss_pred             CCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccC--CCeEEEEEEECC
Confidence            33344556788999999998 45566899999988664322111111111222    344443222  236999999876


Q ss_pred             Cce
Q psy16863        632 GVK  634 (1075)
Q Consensus       632 g~~  634 (1075)
                      +..
T Consensus        94 ~~~   96 (107)
T d1hxmb2          94 NKN   96 (107)
T ss_dssp             SGG
T ss_pred             CCC
Confidence            554

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.011  Score=50.28  Aligned_cols=76  Identities=7%  Similarity=0.011  Sum_probs=42.8

Q ss_pred             EEeeCCeEEEEEEecCCC---eeEEEEc---cCCCeeEEEeeCCCce---eccCcEEE--EecCCeEEEEEceeccCCCe
Q psy16863        146 AVKVGTRARLLVEIRSPT---EIKCQFD---LNNTIPFSFRAQGDHP---IFGNRFRA--INRDGRTELNIRRVRRDDGG  214 (1075)
Q Consensus       146 ~v~~G~~~~l~c~~~~~~---~~~c~~~---~~~~~~~~W~~~~~~~---~~~~~~~~--~~~~~~~~L~I~~~~~~D~G  214 (1075)
                      .+.+|+.++|.|..+...   .....|.   +.....+..+.++...   ....++..  ...++...|+|.+++.+|+|
T Consensus        11 ~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   90 (118)
T d1yjdc1          11 LVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTD   90 (118)
T ss_dssp             EECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGCE
T ss_pred             EEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccCe
Confidence            456799999999987542   1111121   1111111111221111   11233333  34456678999999999999


Q ss_pred             EEEEEEE
Q psy16863        215 RYSVTAS  221 (1075)
Q Consensus       215 ~Y~C~a~  221 (1075)
                      .|.|.+.
T Consensus        91 vYyCa~~   97 (118)
T d1yjdc1          91 IYFCKIE   97 (118)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9999874

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=96.35  E-value=0.0084  Score=49.31  Aligned_cols=68  Identities=21%  Similarity=0.326  Sum_probs=49.0

Q ss_pred             eeecCCeEEEEEEEecCC--CCeEEEEEC--CEEe------ec----------CCcEEEEEee-CcEEEEEEccccCCCC
Q psy16863        759 QATVNEEFKFTVQVSISP--EPKVSWFRD--DQQV------VE----------SDNVKILKET-LGVCHLKIHALEVADQ  817 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~i------~~----------~~~~~~~~~~-~~~~~L~I~~~~~~D~  817 (1075)
                      .+.+|++++|+|.++|..  .-.+.|+|.  |+.+      ..          ..|+.+..+. .++..|.|++++.+|+
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eDT   90 (116)
T d1a2yb_          11 LVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDT   90 (116)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeeccc
Confidence            467899999999999865  346889873  2221      11          1256666543 3467899999999999


Q ss_pred             eEEEEEEEe
Q psy16863        818 AEWKCIATN  826 (1075)
Q Consensus       818 G~Y~C~A~N  826 (1075)
                      +.|.|.-..
T Consensus        91 AvYYCAr~~   99 (116)
T d1a2yb_          91 ARYYCARER   99 (116)
T ss_dssp             EEEEEEEES
T ss_pred             eEEEEEEeC
Confidence            999997543

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.35  E-value=0.001  Score=55.39  Aligned_cols=70  Identities=14%  Similarity=0.149  Sum_probs=44.8

Q ss_pred             cCCeEEEEEEEec-CCCCceEEEEeCCeEEecCCcEEEEEcCCceE----EEEEeeeeecCCceEEEEEECCCCc
Q psy16863        564 IGTSAILECQVLV-PPWPRSIYWYNKEGVVEASDKYHIMADGLGGY----SIEINYLEAVDDGEWKCVATSSSGV  633 (1075)
Q Consensus       564 ~G~~~~L~C~~~~-~p~p~~v~W~~~~~~i~~~~~~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~g~  633 (1075)
                      .++.++|.|.+.+ .|....|.|+++|..+.............+.|    .|.|..-...+...|+|.+.+....
T Consensus        19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~~   93 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET   93 (104)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCCc
Confidence            4678999999998 55556899999999876432211111111222    3555555556677899999987543

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.35  E-value=0.0033  Score=54.39  Aligned_cols=82  Identities=10%  Similarity=0.194  Sum_probs=51.3

Q ss_pred             CCeeee-ecCceeeccCCeEEEEEEEec-CC-CcEEEEEECCEecCCCCcEE---E-----EEcCCE---EEEEEcccCC
Q psy16863        349 APAFIR-RLHDIAVKVGTRARLLVEIRS-PT-EIKIHWYRNDRKLEENKIYR---T-----QHDGNF---YFIDLSSVSL  414 (1075)
Q Consensus       349 ~p~~~~-~~~~~~v~~G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~~~~---~-----~~~g~~---~~L~I~~v~~  414 (1075)
                      ||.+.. .+....+..+..++|.|.+.| .| ...|+|++||+.+.......   .     ..+|..   +.|.|..-.-
T Consensus         4 PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W   83 (127)
T d1ogae2           4 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFW   83 (127)
T ss_dssp             CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHH
T ss_pred             CCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHh
Confidence            555543 333444566788999999987 33 66999999999886431110   0     113332   3566654443


Q ss_pred             CCce-eEEEEEEeCCCc
Q psy16863        415 FDSG-RWTCLAENAVGR  430 (1075)
Q Consensus       415 ~d~G-~Y~C~a~n~~g~  430 (1075)
                      .+.| .|+|.+.+....
T Consensus        84 ~~~g~~ytC~V~H~~l~  100 (127)
T d1ogae2          84 QNPRNHFRCQVQFYGLS  100 (127)
T ss_dssp             TCTTCEEEEEEEECCBC
T ss_pred             CCCCCEEEEEEEECCCC
Confidence            5656 799999987543

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=96.34  E-value=0.0088  Score=49.34  Aligned_cols=68  Identities=15%  Similarity=0.317  Sum_probs=48.7

Q ss_pred             eeeecCCeEEEEEEEecCC--CCeEEEEEC--CEE------eec-----------CCcEEEEEee-CcEEEEEEccccCC
Q psy16863        758 CQATVNEEFKFTVQVSISP--EPKVSWFRD--DQQ------VVE-----------SDNVKILKET-LGVCHLKIHALEVA  815 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~------i~~-----------~~~~~~~~~~-~~~~~L~I~~~~~~  815 (1075)
                      ..+.+|++++|+|.++|..  .-.+.|+|.  |+-      |..           ..|+.+..+. ..+..|.|.+++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~e   89 (118)
T d1ct8b1          10 VLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCCC
Confidence            3477899999999999864  346888872  321      211           1356666543 35678999999999


Q ss_pred             CCeEEEEEEE
Q psy16863        816 DQAEWKCIAT  825 (1075)
Q Consensus       816 D~G~Y~C~A~  825 (1075)
                      |++.|.|...
T Consensus        90 DtAvYYCAr~   99 (118)
T d1ct8b1          90 DSAIYYCARY   99 (118)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeee
Confidence            9999999653

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.32  E-value=0.0092  Score=50.03  Aligned_cols=68  Identities=16%  Similarity=0.359  Sum_probs=47.8

Q ss_pred             eeecCCeEEEEEEEecCC--CCeEEEEEC--CEE------eecC-----------CcEEEEEee-CcEEEEEEccccCCC
Q psy16863        759 QATVNEEFKFTVQVSISP--EPKVSWFRD--DQQ------VVES-----------DNVKILKET-LGVCHLKIHALEVAD  816 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~------i~~~-----------~~~~~~~~~-~~~~~L~I~~~~~~D  816 (1075)
                      .+.+|++++|+|.++|..  .-.+.|+|.  |+.      |..+           .|+.+..+. ..+..|.|++++.+|
T Consensus        10 lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~eD   89 (126)
T d1rjca1          10 SVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPED   89 (126)
T ss_dssp             EECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCccc
Confidence            367899999999999854  346899873  322      2211           366776543 346779999999999


Q ss_pred             CeEEEEEEEe
Q psy16863        817 QAEWKCIATN  826 (1075)
Q Consensus       817 ~G~Y~C~A~N  826 (1075)
                      ++.|.|....
T Consensus        90 TAvYYCAr~~   99 (126)
T d1rjca1          90 TAMYYCAADT   99 (126)
T ss_dssp             CEEEEEEECC
T ss_pred             CceeEEEeec
Confidence            9999997543

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=96.32  E-value=0.0081  Score=50.60  Aligned_cols=69  Identities=20%  Similarity=0.384  Sum_probs=49.7

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEec------C----C---------CCcEEEEEc--CCEEEEEEcc
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRKL------E----E---------NKIYRTQHD--GNFYFIDLSS  411 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~l------~----~---------~~~~~~~~~--g~~~~L~I~~  411 (1075)
                      ....+++|++++|.|.++|..  ..-+.|+|.  |+.+      .    .         ..|+.+..+  .+...|.|.+
T Consensus         8 G~~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~   87 (131)
T d3c2ah1           8 GGGLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNS   87 (131)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceec
Confidence            345788999999999998754  347888872  2211      1    0         135556554  4667899999


Q ss_pred             cCCCCceeEEEEEE
Q psy16863        412 VSLFDSGRWTCLAE  425 (1075)
Q Consensus       412 v~~~d~G~Y~C~a~  425 (1075)
                      ++.+|++.|.|...
T Consensus        88 L~~eDTAvYYCAR~  101 (131)
T d3c2ah1          88 LKTEDTAVYSCTTD  101 (131)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cccCCceEEEEecc
Confidence            99999999999864

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.31  E-value=0.013  Score=49.10  Aligned_cols=69  Identities=16%  Similarity=0.263  Sum_probs=49.7

Q ss_pred             eeeecCCeEEEEEEEecCCC--CeEEEEEC--CEE------ee-c----------CCcEEEEEee-CcEEEEEEccccCC
Q psy16863        758 CQATVNEEFKFTVQVSISPE--PKVSWFRD--DQQ------VV-E----------SDNVKILKET-LGVCHLKIHALEVA  815 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p~--p~v~W~k~--g~~------i~-~----------~~~~~~~~~~-~~~~~L~I~~~~~~  815 (1075)
                      ..+++|++++|+|.++|..-  -.+.|+|-  |+-      |. .          ..|+.+..+. .++..|.|++++.+
T Consensus        10 ~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~e   89 (125)
T d1rihh1          10 ELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTSE   89 (125)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCcc
Confidence            34778999999999998653  36888772  321      11 1          1466676553 45778999999999


Q ss_pred             CCeEEEEEEEe
Q psy16863        816 DQAEWKCIATN  826 (1075)
Q Consensus       816 D~G~Y~C~A~N  826 (1075)
                      |++.|.|....
T Consensus        90 DtAvYYCAR~~  100 (125)
T d1rihh1          90 DSAVYYCARES  100 (125)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceEEEEeeeC
Confidence            99999997643

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.30  E-value=0.0092  Score=49.74  Aligned_cols=68  Identities=15%  Similarity=0.296  Sum_probs=49.5

Q ss_pred             eeecCCeEEEEEEEecCC--CCeEEEEEC--CEE------ee-c----------CCcEEEEEee-CcEEEEEEccccCCC
Q psy16863        759 QATVNEEFKFTVQVSISP--EPKVSWFRD--DQQ------VV-E----------SDNVKILKET-LGVCHLKIHALEVAD  816 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~------i~-~----------~~~~~~~~~~-~~~~~L~I~~~~~~D  816 (1075)
                      .+.+|++++|+|.++|..  .-.+.|+|-  |+.      |. .          ..|+.+..+. .++..|.|++++.+|
T Consensus        11 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~eD   90 (125)
T d1op3h1          11 LVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVED   90 (125)
T ss_dssp             EEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCcc
Confidence            477899999999999854  346899873  221      11 1          1367776543 357889999999999


Q ss_pred             CeEEEEEEEe
Q psy16863        817 QAEWKCIATN  826 (1075)
Q Consensus       817 ~G~Y~C~A~N  826 (1075)
                      ++.|.|....
T Consensus        91 TAvYYCAr~~  100 (125)
T d1op3h1          91 TAIYYCARKG  100 (125)
T ss_dssp             CEEEEEEEEC
T ss_pred             ceeEeEeecc
Confidence            9999997643

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.30  E-value=0.0046  Score=51.50  Aligned_cols=67  Identities=13%  Similarity=0.123  Sum_probs=44.2

Q ss_pred             cCCeEEEEEEEecC-C-CCeEEEEECCEEeecCCcEEE--EEeeCc----EEEEEEccccCCCCeEEEEEEEeCC
Q psy16863        762 VNEEFKFTVQVSIS-P-EPKVSWFRDDQQVVESDNVKI--LKETLG----VCHLKIHALEVADQAEWKCIATNDF  828 (1075)
Q Consensus       762 ~g~~~~l~C~v~g~-p-~p~v~W~k~g~~i~~~~~~~~--~~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~~  828 (1075)
                      .+..++|.|.+.|. | ...|+|++||+.+..+.....  ....+|    .+.|.|..-.......|+|.+....
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~   93 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKT   93 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            45679999999984 5 358999999998753211000  011122    2467777766656778999998654

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=96.28  E-value=0.0036  Score=50.94  Aligned_cols=55  Identities=22%  Similarity=0.409  Sum_probs=35.0

Q ss_pred             ecCCeEEEEEEEECCCC--CeEEEEeCCEeccCCC-----------EE----EEEeCCCCCCCcEEEEEEEEecc
Q psy16863        459 TEQGTVSLECKVMGIPT--PQLIWYKDNKKIKAGD-----------IF----ALTANPKDPSSLGTYTCEAVNCM  516 (1075)
Q Consensus       459 ~~g~~v~l~C~~~g~p~--~~v~W~~~g~~l~~~~-----------~~----~l~i~~~~~~d~G~Y~C~a~n~~  516 (1075)
                      ..++..+|.|.+.|+.+  ..|+|.+||+++..+.           .+    .|.+   ...+...|+|.+.+..
T Consensus        14 ~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v---~~~~~~~ytC~V~H~s   85 (97)
T d1uvqb1          14 ALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEM---TPQRGDVYTCHVEHPS   85 (97)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEEC---CSCTTCCEEEEEECTT
T ss_pred             cCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEecc---CCCCCCEEEEEEEeCC
Confidence            34567789999998543  3899999998875421           12    2333   3455678999998854

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.28  E-value=0.0058  Score=51.37  Aligned_cols=69  Identities=19%  Similarity=0.265  Sum_probs=49.4

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEE--CCEec------C-C----------CCcEEEEEc--CCEEEEEEcccC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYR--NDRKL------E-E----------NKIYRTQHD--GNFYFIDLSSVS  413 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k--~g~~l------~-~----------~~~~~~~~~--g~~~~L~I~~v~  413 (1075)
                      ....+++|++++|.|.++|..  ...+.|+|  .|+.+      . .          ..|+.+..+  .+...|.|.+++
T Consensus         8 g~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~   87 (130)
T d1rzga1           8 GAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLR   87 (130)
T ss_dssp             CCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecC
Confidence            445678999999999998754  45788987  23222      1 1          135556554  356679999999


Q ss_pred             CCCceeEEEEEE
Q psy16863        414 LFDSGRWTCLAE  425 (1075)
Q Consensus       414 ~~d~G~Y~C~a~  425 (1075)
                      .+|++.|.|...
T Consensus        88 ~eDtA~YYCAr~   99 (130)
T d1rzga1          88 SEDTAVFYCASP   99 (130)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             CCccEEEEEEEe
Confidence            999999999854

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.28  E-value=0.0084  Score=49.48  Aligned_cols=67  Identities=15%  Similarity=0.222  Sum_probs=48.8

Q ss_pred             eeecCCeEEEEEEEecCCC--CeEEEEEC--CEEe------ec-----------CCcEEEEEee-CcEEEEEEccccCCC
Q psy16863        759 QATVNEEFKFTVQVSISPE--PKVSWFRD--DQQV------VE-----------SDNVKILKET-LGVCHLKIHALEVAD  816 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p~--p~v~W~k~--g~~i------~~-----------~~~~~~~~~~-~~~~~L~I~~~~~~D  816 (1075)
                      .+.+|++++|+|.++|...  -.+.|+|-  |+-+      ..           ..|+.+..+. .++..|.|++++.+|
T Consensus        11 ~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~eD   90 (120)
T d1ad9b1          11 VKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRSED   90 (120)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCCCc
Confidence            4778999999999998653  36888873  2211      11           1466666543 357889999999999


Q ss_pred             CeEEEEEEE
Q psy16863        817 QAEWKCIAT  825 (1075)
Q Consensus       817 ~G~Y~C~A~  825 (1075)
                      ++.|.|...
T Consensus        91 TAvYYCAr~   99 (120)
T d1ad9b1          91 TAFYFCARE   99 (120)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEEEc
Confidence            999999653

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=96.27  E-value=0.0035  Score=50.98  Aligned_cols=66  Identities=14%  Similarity=0.096  Sum_probs=42.4

Q ss_pred             CCeEEEEEEEec-CC-CcEEEEEECCEecCC----C---CcEEEEEcCCEEEEEEcccCCCCceeEEEEEEeCCC
Q psy16863        364 GTRARLLVEIRS-PT-EIKIHWYRNDRKLEE----N---KIYRTQHDGNFYFIDLSSVSLFDSGRWTCLAENAVG  429 (1075)
Q Consensus       364 G~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~----~---~~~~~~~~g~~~~L~I~~v~~~d~G~Y~C~a~n~~g  429 (1075)
                      ...++|.|.+.| .| ...|+|++||..+..    +   .......+|.........+...+...|+|.+.+.+.
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s~   88 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDGGLEHVYSCRVKGIAT   88 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECTTCGGGEEEEEEEGGG
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence            346899999988 33 679999999876532    1   111223455554333334455666799999987643

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.27  E-value=0.0096  Score=49.91  Aligned_cols=68  Identities=12%  Similarity=0.233  Sum_probs=49.4

Q ss_pred             eeecCCeEEEEEEEecCC--CCeEEEEEC--CEE------eec-----------CCcEEEEEee-CcEEEEEEccccCCC
Q psy16863        759 QATVNEEFKFTVQVSISP--EPKVSWFRD--DQQ------VVE-----------SDNVKILKET-LGVCHLKIHALEVAD  816 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~------i~~-----------~~~~~~~~~~-~~~~~L~I~~~~~~D  816 (1075)
                      .+.+|++++|.|.++|..  .-.+.|+|-  |+.      |..           ..|+.+..+. ..+..|.|++++.+|
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~eD   90 (127)
T d2fb4h1          11 VVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPED   90 (127)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeecc
Confidence            467899999999999864  346888872  221      111           1466776554 357789999999999


Q ss_pred             CeEEEEEEEe
Q psy16863        817 QAEWKCIATN  826 (1075)
Q Consensus       817 ~G~Y~C~A~N  826 (1075)
                      ++.|.|....
T Consensus        91 TA~YYCAr~~  100 (127)
T d2fb4h1          91 TGVYFCARDG  100 (127)
T ss_dssp             CEEEEEEEEC
T ss_pred             eeEEEEEEec
Confidence            9999997654

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0058  Score=50.88  Aligned_cols=67  Identities=12%  Similarity=0.170  Sum_probs=44.9

Q ss_pred             cCCeEEEEEEEecC-CC-CeEEEEECCEEeecCCcEEEE--EeeCc----EEEEEEccccCCCCeEEEEEEEeCC
Q psy16863        762 VNEEFKFTVQVSIS-PE-PKVSWFRDDQQVVESDNVKIL--KETLG----VCHLKIHALEVADQAEWKCIATNDF  828 (1075)
Q Consensus       762 ~g~~~~l~C~v~g~-p~-p~v~W~k~g~~i~~~~~~~~~--~~~~~----~~~L~I~~~~~~D~G~Y~C~A~N~~  828 (1075)
                      .+..++|.|.+.|. |. ..|+|++||..+.........  ...++    .+.|.|..-.......|+|.+....
T Consensus        19 ~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   93 (107)
T d1c5cl2          19 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQG   93 (107)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTT
T ss_pred             cCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            46789999999984 53 589999999876533211110  01122    3468887776666678999998764

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.25  E-value=0.0035  Score=51.85  Aligned_cols=88  Identities=11%  Similarity=0.225  Sum_probs=0.0

Q ss_pred             eeeeecCcee-eccCCeEEEEEEEecCCC----cEEEEEECCEecCCC--CcEEEEEcCCEEEEEEcccCCCC--ce-eE
Q psy16863        351 AFIRRLHDIA-VKVGTRARLLVEIRSPTE----IKIHWYRNDRKLEEN--KIYRTQHDGNFYFIDLSSVSLFD--SG-RW  420 (1075)
Q Consensus       351 ~~~~~~~~~~-v~~G~~v~l~C~~~g~p~----~~v~W~k~g~~l~~~--~~~~~~~~g~~~~L~I~~v~~~d--~G-~Y  420 (1075)
                      .++.+|.... ...+..++|.|.+.+..+    .+|+|++||..+...  .......+|.........+..++  .| .|
T Consensus         2 V~l~pPs~~~~~~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~   81 (103)
T d1i1ca1           2 VFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTF   81 (103)
T ss_dssp             EEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCE
T ss_pred             EEEECcChHHHhccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEE


Q ss_pred             EEEEEeCCCceeeEEEEE
Q psy16863        421 TCLAENAVGRSHCSCELS  438 (1075)
Q Consensus       421 ~C~a~n~~g~~~~s~~l~  438 (1075)
                      +|.+.+..-.......+.
T Consensus        82 tC~V~H~~l~~p~~ktis   99 (103)
T d1i1ca1          82 KCKVNSGAFPAPIEKSIS   99 (103)
T ss_dssp             EEEEECSSSSSCEEEEEC
T ss_pred             EEEEEeCCCCCcEEEEEE

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.24  E-value=0.003  Score=51.23  Aligned_cols=65  Identities=20%  Similarity=0.390  Sum_probs=45.6

Q ss_pred             eecCCeEEEEEEEecCC--CCeEEEEEC--CEE------eec----------CCcEEEEEee-CcEEEEEEccccCCCCe
Q psy16863        760 ATVNEEFKFTVQVSISP--EPKVSWFRD--DQQ------VVE----------SDNVKILKET-LGVCHLKIHALEVADQA  818 (1075)
Q Consensus       760 ~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~------i~~----------~~~~~~~~~~-~~~~~L~I~~~~~~D~G  818 (1075)
                      +.+|++++|+|.++|..  .-.+.|+|.  |+.      |..          ..|+.+..+. .+...|.|++++.+|++
T Consensus         5 vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDtA   84 (107)
T d1sjva_           5 VQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDTA   84 (107)
T ss_dssp             CCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGCS
T ss_pred             ecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccce
Confidence            56899999999999853  346789873  221      111          1366676543 34578999999999999


Q ss_pred             EEEEEE
Q psy16863        819 EWKCIA  824 (1075)
Q Consensus       819 ~Y~C~A  824 (1075)
                      .|-|..
T Consensus        85 vYyCA~   90 (107)
T d1sjva_          85 VYYCYT   90 (107)
T ss_dssp             EEEEEE
T ss_pred             eeeEec
Confidence            999954

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.24  E-value=0.0069  Score=50.16  Aligned_cols=67  Identities=16%  Similarity=0.317  Sum_probs=48.4

Q ss_pred             eeeecCCeEEEEEEEecCC--CCeEEEEEC--CEE------eec-----------CCcEEEEEee-CcEEEEEEccccCC
Q psy16863        758 CQATVNEEFKFTVQVSISP--EPKVSWFRD--DQQ------VVE-----------SDNVKILKET-LGVCHLKIHALEVA  815 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~------i~~-----------~~~~~~~~~~-~~~~~L~I~~~~~~  815 (1075)
                      ..+.+|++++|+|.++|..  .-.+.|+|-  |+.      |..           ..|+.+..+. ..+..|.|++++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~e   89 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPE   89 (121)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeecccc
Confidence            3477999999999999864  446889873  221      211           1256665532 34678999999999


Q ss_pred             CCeEEEEEE
Q psy16863        816 DQAEWKCIA  824 (1075)
Q Consensus       816 D~G~Y~C~A  824 (1075)
                      |++.|.|..
T Consensus        90 DtAvYYCAr   98 (121)
T d2p49b1          90 DTATYYCAA   98 (121)
T ss_dssp             GCEEEEEEE
T ss_pred             ceeEEeeec
Confidence            999999975

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.24  E-value=0.0092  Score=49.84  Aligned_cols=69  Identities=19%  Similarity=0.286  Sum_probs=48.4

Q ss_pred             CceeeccCCeEEEEEEEecCC----CcEEEEEE--CCEec-------C-------C--CCcEEEEEc--CCEEEEEEccc
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT----EIKIHWYR--NDRKL-------E-------E--NKIYRTQHD--GNFYFIDLSSV  412 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p----~~~v~W~k--~g~~l-------~-------~--~~~~~~~~~--g~~~~L~I~~v  412 (1075)
                      ....+++|++++|.|.++|..    ..-+.|+|  .|+.+       .       +  ..|+.+..+  .+...|+|.++
T Consensus         8 g~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl   87 (123)
T d1r0ah1           8 GPGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTV   87 (123)
T ss_dssp             CCSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSC
T ss_pred             CCceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeec
Confidence            345678999999999998743    23678997  23221       0       1  135555543  45677999999


Q ss_pred             CCCCceeEEEEEE
Q psy16863        413 SLFDSGRWTCLAE  425 (1075)
Q Consensus       413 ~~~d~G~Y~C~a~  425 (1075)
                      +.+|++.|.|...
T Consensus        88 ~~eDsAvYyCAr~  100 (123)
T d1r0ah1          88 ETADTAIYYCAQS  100 (123)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccccceEEeeccc
Confidence            9999999999753

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.21  E-value=0.011  Score=49.20  Aligned_cols=68  Identities=15%  Similarity=0.290  Sum_probs=49.5

Q ss_pred             eeecCCeEEEEEEEecCCC--CeEEEEEC--CEE------ee--c-----------CCcEEEEEee-CcEEEEEEccccC
Q psy16863        759 QATVNEEFKFTVQVSISPE--PKVSWFRD--DQQ------VV--E-----------SDNVKILKET-LGVCHLKIHALEV  814 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p~--p~v~W~k~--g~~------i~--~-----------~~~~~~~~~~-~~~~~L~I~~~~~  814 (1075)
                      .+.+|++++|+|.++|...  -.+.|+|-  |+.      |.  .           ..|+.+..+. .++..|.|.+++.
T Consensus        11 ~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~   90 (122)
T d1q9rb1          11 LVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLRA   90 (122)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeeecc
Confidence            4778999999999998653  36899873  321      11  0           1366676543 3467899999999


Q ss_pred             CCCeEEEEEEEe
Q psy16863        815 ADQAEWKCIATN  826 (1075)
Q Consensus       815 ~D~G~Y~C~A~N  826 (1075)
                      +|++.|.|....
T Consensus        91 eDTAvYYCar~~  102 (122)
T d1q9rb1          91 EDSATYYCARDH  102 (122)
T ss_dssp             GGCEEEEEEECC
T ss_pred             CcceEEEEEecC
Confidence            999999998643

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.20  E-value=0.015  Score=48.58  Aligned_cols=68  Identities=16%  Similarity=0.295  Sum_probs=49.3

Q ss_pred             eeecCCeEEEEEEEecCC--CCeEEEEEC--CEE------ee-c----------CCcEEEEEee-CcEEEEEEccccCCC
Q psy16863        759 QATVNEEFKFTVQVSISP--EPKVSWFRD--DQQ------VV-E----------SDNVKILKET-LGVCHLKIHALEVAD  816 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~------i~-~----------~~~~~~~~~~-~~~~~L~I~~~~~~D  816 (1075)
                      .+++|++++|+|.++|..  .--+.|+|-  |+-      |. .          ..|+.+..+. .++..|.|++++.+|
T Consensus        11 ~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~eD   90 (127)
T d2fx7h1          11 VKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPED   90 (127)
T ss_dssp             EECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCccc
Confidence            367899999999999864  335899872  321      11 1          1466666554 346789999999999


Q ss_pred             CeEEEEEEEe
Q psy16863        817 QAEWKCIATN  826 (1075)
Q Consensus       817 ~G~Y~C~A~N  826 (1075)
                      ++.|.|....
T Consensus        91 TavYYCAR~~  100 (127)
T d2fx7h1          91 TAVYYCAREG  100 (127)
T ss_dssp             CEEEEEEEEE
T ss_pred             ceEEEEeecc
Confidence            9999997653

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=96.19  E-value=0.018  Score=47.31  Aligned_cols=69  Identities=20%  Similarity=0.275  Sum_probs=49.6

Q ss_pred             CceeeccCCeEEEEEEEecCC--CcEEEEEEC--CEec------CC----------CCcEEEEEc--CCEEEEEEcccCC
Q psy16863        357 HDIAVKVGTRARLLVEIRSPT--EIKIHWYRN--DRKL------EE----------NKIYRTQHD--GNFYFIDLSSVSL  414 (1075)
Q Consensus       357 ~~~~v~~G~~v~l~C~~~g~p--~~~v~W~k~--g~~l------~~----------~~~~~~~~~--g~~~~L~I~~v~~  414 (1075)
                      ....+++|++++|.|.++|..  .--+.|+|.  |+.+      ..          ..|+.+..+  .+...|.|.+++.
T Consensus         8 g~~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~   87 (118)
T d1lo4h1           8 GGDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRS   87 (118)
T ss_dssp             CCCEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCG
T ss_pred             CCceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccC
Confidence            345678999999999998854  558899883  2221      11          124555543  4567899999999


Q ss_pred             CCceeEEEEEE
Q psy16863        415 FDSGRWTCLAE  425 (1075)
Q Consensus       415 ~d~G~Y~C~a~  425 (1075)
                      +|++.|.|...
T Consensus        88 eDtA~YyCAr~   98 (118)
T d1lo4h1          88 EDTAIYYCARG   98 (118)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEeccc
Confidence            99999999754

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.17  E-value=0.015  Score=48.39  Aligned_cols=67  Identities=19%  Similarity=0.276  Sum_probs=48.7

Q ss_pred             eeeecCCeEEEEEEEecCCC--CeEEEEEC--CEE------eec-----------CCcEEEEEee-CcEEEEEEccccCC
Q psy16863        758 CQATVNEEFKFTVQVSISPE--PKVSWFRD--DQQ------VVE-----------SDNVKILKET-LGVCHLKIHALEVA  815 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p~--p~v~W~k~--g~~------i~~-----------~~~~~~~~~~-~~~~~L~I~~~~~~  815 (1075)
                      ..+.+|++++|+|.++|..-  -.+.|+|-  |+.      |..           ..|+.+..+. .++..|.|++++.+
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~e   89 (124)
T d2b1hh1          10 EVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKPS   89 (124)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeeccccc
Confidence            34789999999999998653  35789872  221      111           1466666554 34778999999999


Q ss_pred             CCeEEEEEE
Q psy16863        816 DQAEWKCIA  824 (1075)
Q Consensus       816 D~G~Y~C~A  824 (1075)
                      |++.|.|..
T Consensus        90 DTA~YYCAR   98 (124)
T d2b1hh1          90 DTALYYCAR   98 (124)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEee
Confidence            999999954

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.15  E-value=0.014  Score=48.70  Aligned_cols=67  Identities=21%  Similarity=0.285  Sum_probs=48.9

Q ss_pred             eeeecCCeEEEEEEEecCCC--CeEEEEEC--CEE------eec-----------CCcEEEEEee-CcEEEEEEccccCC
Q psy16863        758 CQATVNEEFKFTVQVSISPE--PKVSWFRD--DQQ------VVE-----------SDNVKILKET-LGVCHLKIHALEVA  815 (1075)
Q Consensus       758 ~~~~~g~~~~l~C~v~g~p~--p~v~W~k~--g~~------i~~-----------~~~~~~~~~~-~~~~~L~I~~~~~~  815 (1075)
                      ..+++|++++|+|.++|..-  --+.|+|.  |+-      |..           ..|+.+..+. ..+..|.|++++.+
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~e   89 (127)
T d1n0xh1          10 EVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSA   89 (127)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCCC
Confidence            44778999999999998653  35889872  322      211           1366776653 34778999999999


Q ss_pred             CCeEEEEEE
Q psy16863        816 DQAEWKCIA  824 (1075)
Q Consensus       816 D~G~Y~C~A  824 (1075)
                      |++.|.|.-
T Consensus        90 DtAvYYCAR   98 (127)
T d1n0xh1          90 DTAVYYCAR   98 (127)
T ss_dssp             GCEEEEEEE
T ss_pred             CceEEEEEe
Confidence            999999963

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=96.13  E-value=0.019  Score=47.24  Aligned_cols=68  Identities=15%  Similarity=0.253  Sum_probs=49.2

Q ss_pred             eeecCCeEEEEEEEecCC--CCeEEEEEC--CEEe------ec----------CCcEEEEEee-CcEEEEEEccccCCCC
Q psy16863        759 QATVNEEFKFTVQVSISP--EPKVSWFRD--DQQV------VE----------SDNVKILKET-LGVCHLKIHALEVADQ  817 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~i------~~----------~~~~~~~~~~-~~~~~L~I~~~~~~D~  817 (1075)
                      .+.+|++++|+|.++|..  .-.+.|+|.  |+.+      ..          ..|+.+..+. ..+..|.|++++.+|+
T Consensus        11 ~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eDt   90 (118)
T d1lo4h1          11 LVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSEDT   90 (118)
T ss_dssp             EECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCcc
Confidence            367899999999999865  347889873  3221      11          1356666543 3467899999999999


Q ss_pred             eEEEEEEEe
Q psy16863        818 AEWKCIATN  826 (1075)
Q Consensus       818 G~Y~C~A~N  826 (1075)
                      +.|-|...-
T Consensus        91 A~YyCAr~~   99 (118)
T d1lo4h1          91 AIYYCARGT   99 (118)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEecccC
Confidence            999997543

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=96.12  E-value=0.0091  Score=50.00  Aligned_cols=68  Identities=19%  Similarity=0.297  Sum_probs=48.6

Q ss_pred             ceeeccCCeEEEEEEEecCC---CcEEEEEEC--CEec------CC----------CCcEEEEE--cCCEEEEEEcccCC
Q psy16863        358 DIAVKVGTRARLLVEIRSPT---EIKIHWYRN--DRKL------EE----------NKIYRTQH--DGNFYFIDLSSVSL  414 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~~g~p---~~~v~W~k~--g~~l------~~----------~~~~~~~~--~g~~~~L~I~~v~~  414 (1075)
                      ...+++|++++|.|.++|..   ..-+.|+|.  |+.+      ..          ..|+.+..  ..+...|+|.+++.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~   88 (127)
T d3cx5j1           9 AGLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTT   88 (127)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceecccc
Confidence            45678999999999998854   247899872  3322      11          12444443  35667899999999


Q ss_pred             CCceeEEEEEE
Q psy16863        415 FDSGRWTCLAE  425 (1075)
Q Consensus       415 ~d~G~Y~C~a~  425 (1075)
                      +|++.|.|...
T Consensus        89 eDtAvYyCAr~   99 (127)
T d3cx5j1          89 EDTATYYCARS   99 (127)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEEeeee
Confidence            99999999753

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.11  E-value=0.0042  Score=51.28  Aligned_cols=70  Identities=14%  Similarity=0.236  Sum_probs=48.9

Q ss_pred             ceeeccCCeEEEEEEEecCC--CcEEEEEE--CCEec------CCC----------CcEEEEE--cCCEEEEEEcccCCC
Q psy16863        358 DIAVKVGTRARLLVEIRSPT--EIKIHWYR--NDRKL------EEN----------KIYRTQH--DGNFYFIDLSSVSLF  415 (1075)
Q Consensus       358 ~~~v~~G~~v~l~C~~~g~p--~~~v~W~k--~g~~l------~~~----------~~~~~~~--~g~~~~L~I~~v~~~  415 (1075)
                      ...+++|++++|.|.++|..  ...+.|+|  .|+.+      ..+          .|+.+..  ..+...|.|.+++.+
T Consensus         9 ~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~e   88 (116)
T d1fn4b1           9 PGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTD   88 (116)
T ss_dssp             CSBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCC
T ss_pred             CceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCC
Confidence            34678999999999998754  45889998  23322      111          2334443  235567999999999


Q ss_pred             CceeEEEEEEeC
Q psy16863        416 DSGRWTCLAENA  427 (1075)
Q Consensus       416 d~G~Y~C~a~n~  427 (1075)
                      |++.|.|.....
T Consensus        89 DTAvYyCAr~~~  100 (116)
T d1fn4b1          89 DTGTYYCTRDLY  100 (116)
T ss_dssp             CCEEEEEEEECS
T ss_pred             CCEEEEEEeecC
Confidence            999999975443

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.11  E-value=0.0039  Score=51.50  Aligned_cols=68  Identities=22%  Similarity=0.307  Sum_probs=48.6

Q ss_pred             eeecCCeEEEEEEEecCC--CCeEEEEEC--CEEe------ec----------CCcEEEEEee-CcEEEEEEccccCCCC
Q psy16863        759 QATVNEEFKFTVQVSISP--EPKVSWFRD--DQQV------VE----------SDNVKILKET-LGVCHLKIHALEVADQ  817 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~i------~~----------~~~~~~~~~~-~~~~~L~I~~~~~~D~  817 (1075)
                      .+.+|++++|+|.++|..  .-.+.|+|-  |+.+      ..          ..|+.+..+. ..+..|.|++++.+|+
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDT   90 (116)
T d1fn4b1          11 LVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDT   90 (116)
T ss_dssp             BCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCCC
T ss_pred             eECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCCC
Confidence            367899999999999865  346889872  3321      11          1355665543 3467899999999999


Q ss_pred             eEEEEEEEe
Q psy16863        818 AEWKCIATN  826 (1075)
Q Consensus       818 G~Y~C~A~N  826 (1075)
                      +.|-|....
T Consensus        91 AvYyCAr~~   99 (116)
T d1fn4b1          91 GTYYCTRDL   99 (116)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEeec
Confidence            999996543

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.11  E-value=0.016  Score=48.81  Aligned_cols=69  Identities=20%  Similarity=0.285  Sum_probs=50.0

Q ss_pred             eeecCCeEEEEEEEecCCC--CeEEEEEC--CEE------ee-c----------CCcEEEEEee-CcEEEEEEccccCCC
Q psy16863        759 QATVNEEFKFTVQVSISPE--PKVSWFRD--DQQ------VV-E----------SDNVKILKET-LGVCHLKIHALEVAD  816 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p~--p~v~W~k~--g~~------i~-~----------~~~~~~~~~~-~~~~~L~I~~~~~~D  816 (1075)
                      .+.+|++++|+|.++|..-  -.+.|+|-  |+-      |. .          ..|+.+..+. .++..|.|++++.+|
T Consensus        10 ~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~eD   89 (133)
T d1rzfh1          10 VNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRSDD   89 (133)
T ss_dssp             EECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCCCC
Confidence            4778999999999998653  35888872  221      11 1          2467776654 347889999999999


Q ss_pred             CeEEEEEEEeC
Q psy16863        817 QAEWKCIATND  827 (1075)
Q Consensus       817 ~G~Y~C~A~N~  827 (1075)
                      ++.|.|.....
T Consensus        90 tA~YYCAr~~~  100 (133)
T d1rzfh1          90 TAVYYCASNSI  100 (133)
T ss_dssp             CEEEEEEEEEC
T ss_pred             CEEEEeeeccC
Confidence            99999966543

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.11  E-value=0.011  Score=49.68  Aligned_cols=67  Identities=13%  Similarity=0.261  Sum_probs=48.7

Q ss_pred             eeecCCeEEEEEEEecCC--CCeEEEEEC--CEE------eec-----------CCcEEEEEee-CcEEEEEEccccCCC
Q psy16863        759 QATVNEEFKFTVQVSISP--EPKVSWFRD--DQQ------VVE-----------SDNVKILKET-LGVCHLKIHALEVAD  816 (1075)
Q Consensus       759 ~~~~g~~~~l~C~v~g~p--~p~v~W~k~--g~~------i~~-----------~~~~~~~~~~-~~~~~L~I~~~~~~D  816 (1075)
                      .+.+|++++|+|.++|..  .-.+.|+|-  |+-      |..           ..|+.+..+. ..+..|.|.+++.+|
T Consensus        11 lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~eD   90 (135)
T d1ieha_          11 LVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSED   90 (135)
T ss_dssp             EECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSSS
T ss_pred             eECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCccc
Confidence            477899999999999864  346889873  321      211           1366666543 345789999999999


Q ss_pred             CeEEEEEEE
Q psy16863        817 QAEWKCIAT  825 (1075)
Q Consensus       817 ~G~Y~C~A~  825 (1075)
                      ++.|.|...
T Consensus        91 TAvYYCAr~   99 (135)
T d1ieha_          91 TAVYYCAKY   99 (135)
T ss_dssp             CEEEEEEEB
T ss_pred             ceeeEEEEe
Confidence            999999764

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.02  Score=46.13  Aligned_cols=67  Identities=12%  Similarity=0.202  Sum_probs=43.1

Q ss_pred             CCeEEEEEEEecC-CCCceEEEEeCCeEEecCCcE-EEEEcCCceEE-EEEeeeeecCCceEEEEEECCC
Q psy16863        565 GTSAILECQVLVP-PWPRSIYWYNKEGVVEASDKY-HIMADGLGGYS-IEINYLEAVDDGEWKCVATSSS  631 (1075)
Q Consensus       565 G~~~~L~C~~~~~-p~p~~v~W~~~~~~i~~~~~~-~~~~~~~~~~~-L~i~~~~~~d~G~Y~C~a~n~~  631 (1075)
                      +..++|.|.+.|. |....++|+++|..+...... ....++.+.+. .....+...+...|+|.+.+..
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC~V~H~~   84 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEG   84 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEECTT
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEEEEEECc
Confidence            5689999999984 555689999999887643322 12233333332 2222345556668999999864