Psyllid ID: psy16868

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTDHRVPGFIRCRSTSVDLYRCSYG
Secondary Structure (PSIPRED)
cEEEEEEEEEEccccccEEEcccccccEEEEccccccHHHHHHHHHHHHcccccccccccccccEEEccccccEEEEEEEEEEEcccccccccccEEEEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEcccccccccEEccccccEEEEEccccccccHHHHHHHHHHHHHHHHHHccccccHEEEcccccccccEEEEEEEEcccccccccccEEEEEEEEEEcccc
Coil and Loop (DISEMBL)
MYIKQVIIHGfksykeqtvvepfdkrhnvvvgrngsgksnFFFAIQFVLsdestslrhsdsrqallhegtgprvvNAYVEIVfdntdhrvpgfircrstsvdlyrcsyg
Flexible Loop (DISEMBL)
myikqviihgfksykeqtvvepfdkrHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQAllhegtgprvVNAYVEIVFdntdhrvpgfircrstsvdlyrcsyg
Low Complexity Region (SEG)
MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTDHRVPGFIRCRSTSVDLYRCSYG
Disordered region (IsUnstruct)
*YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLS**************LLHEGTGPRVVNAYVEIVFDNTDHRVPGFIRCRSTSVDLYRC***
Disordered Region (DISOPRED)
MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLS***************LHEGTGPRVVNAYVEIVFDNTDHRVPGFIRCRSTSVDLYRC***
Disordered Region (DISEMBL)
MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTDHRVPGFIRCRSTSVDLYRCSYG
Disordered Region (DISPRO)
MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTDHRVPGFIRCRSTSVDLYRCS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTDHRVPGFIRCRSTSVDLYRCSYG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	109	2.2.26 [Sep-21-2011]
P97690	1191	Structural maintenance of	yes	N/A	0.825	0.075	0.714	3e-35
Q5R4K5	1217	Structural maintenance of	yes	N/A	0.825	0.073	0.714	3e-35
Q9CW03	1217	Structural maintenance of	yes	N/A	0.825	0.073	0.714	3e-35
Q9UQE7	1217	Structural maintenance of	yes	N/A	0.825	0.073	0.714	3e-35
O97594	1218	Structural maintenance of	yes	N/A	0.825	0.073	0.714	3e-35
O93309	1209	Structural maintenance of	N/A	N/A	0.825	0.074	0.714	3e-35
Q00737	1215	Chromosome segregation pr	yes	N/A	0.825	0.074	0.692	1e-31
Q56YN8	1204	Structural maintenance of	yes	N/A	0.825	0.074	0.670	2e-27
O42649	1194	Structural maintenance of	yes	N/A	0.825	0.075	0.626	3e-27
P47037	1230	Structural maintenance of	yes	N/A	0.798	0.070	0.545	7e-23

>sp|P97690|SMC3_RAT Structural maintenance of chromosomes protein 3 OS=Rattus norvegicus GN=Smc3 PE=1 SV=1

 Score =  146 bits (369), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 65/91 (71%), Positives = 82/91 (90%), Gaps = 1/91 (1%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          MYIKQVII GF+SY++QT+V+PF  +HNV+VGRNGSGKSNFF+AIQFVLSDE + LR  +
Sbjct: 1  MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLR-PE 59

Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
           R ALLHEGTGPRV++A+VEI+FDN+D+R+P
Sbjct: 60 QRLALLHEGTGPRVISAFVEIIFDNSDNRLP 90

Central component of cohesin, a complex required for chromosome cohesion during the cell cycle. The cohesin complex may form a large proteinaceous ring within which sister chromatids can be trapped. At anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate. Cohesion is coupled to DNA replication and is involved in DNA repair. The cohesin complex plays also an important role in spindle pole assembly during mitosis and in chromosomes movement.
Rattus norvegicus (taxid: 10116)

>sp|Q5R4K5|SMC3_PONAB Structural maintenance of chromosomes protein 3 OS=Pongo abelii GN=SMC3 PE=2 SV=1

 Score =  146 bits (369), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 65/91 (71%), Positives = 82/91 (90%), Gaps = 1/91 (1%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          MYIKQVII GF+SY++QT+V+PF  +HNV+VGRNGSGKSNFF+AIQFVLSDE + LR  +
Sbjct: 1  MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLR-PE 59

Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
           R ALLHEGTGPRV++A+VEI+FDN+D+R+P
Sbjct: 60 QRLALLHEGTGPRVISAFVEIIFDNSDNRLP 90

Central component of cohesin, a complex required for chromosome cohesion during the cell cycle. The cohesin complex may form a large proteinaceous ring within which sister chromatids can be trapped. At anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate. Cohesion is coupled to DNA replication and is involved in DNA repair. The cohesin complex plays also an important role in spindle pole assembly during mitosis and in chromosomes movement.

Pongo abelii (taxid: 9601)

>sp|Q9CW03|SMC3_MOUSE Structural maintenance of chromosomes protein 3 OS=Mus musculus GN=Smc3 PE=1 SV=2

 Score =  146 bits (369), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 65/91 (71%), Positives = 82/91 (90%), Gaps = 1/91 (1%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          MYIKQVII GF+SY++QT+V+PF  +HNV+VGRNGSGKSNFF+AIQFVLSDE + LR  +
Sbjct: 1  MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLR-PE 59

Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
           R ALLHEGTGPRV++A+VEI+FDN+D+R+P
Sbjct: 60 QRLALLHEGTGPRVISAFVEIIFDNSDNRLP 90

Central component of cohesin, a complex required for chromosome cohesion during the cell cycle. The cohesin complex may form a large proteinaceous ring within which sister chromatids can be trapped. At anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate. Cohesion is coupled to DNA replication and is involved in DNA repair. The cohesin complex plays also an important role in spindle pole assembly during mitosis and in chromosomes movement.

Mus musculus (taxid: 10090)

>sp|Q9UQE7|SMC3_HUMAN Structural maintenance of chromosomes protein 3 OS=Homo sapiens GN=SMC3 PE=1 SV=2

 Score =  146 bits (369), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 65/91 (71%), Positives = 82/91 (90%), Gaps = 1/91 (1%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          MYIKQVII GF+SY++QT+V+PF  +HNV+VGRNGSGKSNFF+AIQFVLSDE + LR  +
Sbjct: 1  MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLR-PE 59

Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
           R ALLHEGTGPRV++A+VEI+FDN+D+R+P
Sbjct: 60 QRLALLHEGTGPRVISAFVEIIFDNSDNRLP 90

Central component of cohesin, a complex required for chromosome cohesion during the cell cycle. The cohesin complex may form a large proteinaceous ring within which sister chromatids can be trapped. At anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate. Cohesion is coupled to DNA replication and is involved in DNA repair. The cohesin complex plays also an important role in spindle pole assembly during mitosis and in chromosomes movement.

Homo sapiens (taxid: 9606)

>sp|O97594|SMC3_BOVIN Structural maintenance of chromosomes protein 3 OS=Bos taurus GN=SMC3 PE=1 SV=1

 Score =  146 bits (369), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 65/91 (71%), Positives = 82/91 (90%), Gaps = 1/91 (1%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          MYIKQVII GF+SY++QT+V+PF  +HNV+VGRNGSGKSNFF+AIQFVLSDE + LR  +
Sbjct: 1  MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLR-PE 59

Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
           R ALLHEGTGPRV++A+VEI+FDN+D+R+P
Sbjct: 60 QRLALLHEGTGPRVISAFVEIIFDNSDNRLP 90

Central component of cohesin, a complex required for chromosome cohesion during the cell cycle. The cohesin complex may form a large proteinaceous ring within which sister chromatids can be trapped. At anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate. Cohesion is coupled to DNA replication and is involved in DNA repair. The cohesin complex plays also an important role in spindle pole assembly during mitosis and in chromosomes movement.

Bos taurus (taxid: 9913)

>sp|O93309|SMC3_XENLA Structural maintenance of chromosomes protein 3 OS=Xenopus laevis GN=smc3 PE=1 SV=2

 Score =  146 bits (369), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 65/91 (71%), Positives = 82/91 (90%), Gaps = 1/91 (1%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          MYIKQVII GF+SY++QT+V+PF  +HNV+VGRNGSGKSNFF+AIQFVLSDE + LR  +
Sbjct: 1  MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLR-PE 59

Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
           R ALLHEGTGPRV++A+VEI+FDN+D+R+P
Sbjct: 60 QRLALLHEGTGPRVISAFVEIIFDNSDNRLP 90

Central component of cohesin, a complex required for chromosome cohesion during the cell cycle. The cohesin complex may form a large proteinaceous ring within which sister chromatids can be trapped. At anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate. Cohesion is coupled to DNA replication and is involved in DNA repair. The cohesin complex plays also an important role in spindle pole assembly during mitosis and in chromosomes movement.

Xenopus laevis (taxid: 8355)

>sp|Q00737|SUDA_EMENI Chromosome segregation protein sudA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=sudA PE=2 SV=3

 Score =  135 bits (339), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 63/91 (69%), Positives = 76/91 (83%), Gaps = 1/91 (1%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          MY+KQ+II GFKSYK+QTV+EPF  +HNV+VGRNGSGKSNFF AI+FVLSD  T L   +
Sbjct: 1  MYVKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRFVLSDAYTHLGR-E 59

Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
           RQALLHEG+G  V++AYVEI+FDN+D R P
Sbjct: 60 ERQALLHEGSGSAVMSAYVEIIFDNSDERFP 90

Involved in chromosome segregation in mitosis.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q56YN8|SMC3_ARATH Structural maintenance of chromosomes protein 3 OS=Arabidopsis thaliana GN=SMC3 PE=2 SV=1

 Score =  120 bits (302), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/91 (67%), Positives = 71/91 (78%), Gaps = 1/91 (1%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          M+IKQVII GFKSYKEQ   E F  + N VVG NGSGKSNFF AI+FVLSD   +LR S+
Sbjct: 1  MFIKQVIIEGFKSYKEQVATEEFSNKVNCVVGANGSGKSNFFHAIRFVLSDIYQNLR-SE 59

Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
           R ALLHEG G +VV+A+VEIVFDN+D+R P
Sbjct: 60 DRHALLHEGAGHQVVSAFVEIVFDNSDNRFP 90

Central component of cohesin, a complex required for chromosome cohesion during the cell cycle. The cohesin complex may form a large proteinaceous ring within which sister chromatids can be trapped. At anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate. Cohesion is coupled to DNA replication and is involved in DNA repair. The cohesin complex plays also an important role in spindle pole assembly during mitosis and in chromosomes movement (By similarity). Essential protein plant viability. Required for chromosome segregation (e.g. sister chromatid alignment) and cell division during embryogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|O42649|SMC3_SCHPO Structural maintenance of chromosomes protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=psm3 PE=1 SV=1

 Score =  120 bits (301), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 57/91 (62%), Positives = 69/91 (75%), Gaps = 1/91 (1%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          MYI +++I GFKSYK+ TV+EP    HNV+VGRNGSGKSNFF AI+FVLSD  T L   +
Sbjct: 1  MYITKIVIQGFKSYKDYTVIEPLSPHHNVIVGRNGSGKSNFFAAIRFVLSDAYTHLSR-E 59

Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
           RQALLHEG G  V++AYVE+ F N D+R P
Sbjct: 60 ERQALLHEGPGATVMSAYVEVTFANADNRFP 90

Involved in chromosome cohesion during cell cycle and in DNA repair. Central component of cohesin complex. The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P47037|SMC3_YEAST Structural maintenance of chromosomes protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMC3 PE=1 SV=1

 Score =  105 bits (263), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 48/88 (54%), Positives = 69/88 (78%), Gaps = 1/88 (1%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          MYIK+VII GFK+Y+ +T+++ F    NV++G NGSGKSNFF AI+FVLSD+ ++L+  +
Sbjct: 1  MYIKRVIIKGFKTYRNETIIDNFSPHQNVIIGSNGSGKSNFFAAIRFVLSDDYSNLKR-E 59

Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDH 88
           RQ L+H+G+G  V++A VEIVF + DH
Sbjct: 60 ERQGLIHQGSGGSVMSASVEIVFHDPDH 87

Involved in chromosome cohesion during cell cycle and in DNA repair. Central component of cohesin complex. The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
328711900	1206	PREDICTED: structural maintenance of chr	0.825	0.074	0.846	8e-39
328699504	1204	PREDICTED: structural maintenance of chr	0.825	0.074	0.824	2e-37
118787977	1201	AGAP006388-PA [Anopheles gambiae str. PE	0.825	0.074	0.824	2e-37
91091932	1203	PREDICTED: similar to structural mainten	0.825	0.074	0.824	5e-37
242021385	1206	structural maintenance of chromosome, pu	0.825	0.074	0.813	9e-37
195446621	1201	GK25447 [Drosophila willistoni] gi|19416	0.825	0.074	0.813	9e-37
195134412	1200	GI10989 [Drosophila mojavensis] gi|19390	0.825	0.075	0.813	9e-37
195392610	1130	GJ19101 [Drosophila virilis] gi|19414946	0.825	0.079	0.813	1e-36
198468360	1200	GA22046 [Drosophila pseudoobscura pseudo	0.825	0.075	0.813	1e-36
195165821	232	GL19756 [Drosophila persimilis] gi|19410	0.825	0.387	0.813	2e-36

>gi|328711900|ref|XP_001952378.2| PREDICTED: structural maintenance of chromosomes protein 3-like [Acyrthosiphon pisum]

 Score =  164 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 77/91 (84%), Positives = 85/91 (93%), Gaps = 1/91 (1%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          M+IKQVIIHGFKSY+EQTVVEPFDKRHNVVVGRNGSGKSNFF+AIQFVLSDE + LR  +
Sbjct: 1  MHIKQVIIHGFKSYREQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFSHLR-PE 59

Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
           RQALLHEGTGPRVV AYVEI+FDNTD+R+P
Sbjct: 60 QRQALLHEGTGPRVVTAYVEIIFDNTDNRLP 90

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328699504|ref|XP_003240955.1| PREDICTED: structural maintenance of chromosomes protein 3-like [Acyrthosiphon pisum]

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 75/91 (82%), Positives = 85/91 (93%), Gaps = 1/91 (1%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          M+IKQVIIHGFKSY+EQTVVEPFDKRHNVVVGRNGSGKSNFF+AIQFVLSDE + LR  +
Sbjct: 1  MFIKQVIIHGFKSYREQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFSHLR-PE 59

Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
           RQALLHEGTGP+V +AYVEI+FDNTD+R+P
Sbjct: 60 QRQALLHEGTGPKVNSAYVEIIFDNTDNRLP 90

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118787977|ref|XP_316422.3| AGAP006388-PA [Anopheles gambiae str. PEST] gi|27227576|emb|CAD59405.1| SMC3 protein [Anopheles gambiae] gi|116127058|gb|EAA11190.3| AGAP006388-PA [Anopheles gambiae str. PEST]

 Score =  159 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 75/91 (82%), Positives = 84/91 (92%), Gaps = 1/91 (1%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          M+IKQVII GFKSY+EQTVVEPFDKRHNVVVGRNGSGKSNFF+AIQFVLSDE T LR  +
Sbjct: 1  MHIKQVIIQGFKSYREQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHLR-PE 59

Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
           RQALLHEGTGPR ++AYVEI+FDN+D+RVP
Sbjct: 60 QRQALLHEGTGPRAMSAYVEIIFDNSDNRVP 90

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91091932|ref|XP_966409.1| PREDICTED: similar to structural maintenance of chromosomes smc3 isoform 1 [Tribolium castaneum] gi|270000783|gb|EEZ97230.1| hypothetical protein TcasGA2_TC011028 [Tribolium castaneum]

 Score =  158 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 75/91 (82%), Positives = 84/91 (92%), Gaps = 1/91 (1%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          M+IKQVII GFKSY++QTVVEPFDKRHNVVVGRNGSGKSNFF+AIQFVLSDE + LR  +
Sbjct: 1  MHIKQVIIQGFKSYRDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFSHLR-PE 59

Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
           RQALLHEGTGPRVV+AYVEI+FDN+D RVP
Sbjct: 60 QRQALLHEGTGPRVVSAYVEIIFDNSDARVP 90

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242021385|ref|XP_002431125.1| structural maintenance of chromosome, putative [Pediculus humanus corporis] gi|212516374|gb|EEB18387.1| structural maintenance of chromosome, putative [Pediculus humanus corporis]

 Score =  157 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 74/91 (81%), Positives = 82/91 (90%), Gaps = 1/91 (1%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          MYIKQVII GFKSY+EQTVVEPFD RHNVVVGRNGSGKSNFF+AIQFVLSDE + LR  +
Sbjct: 1  MYIKQVIIQGFKSYREQTVVEPFDHRHNVVVGRNGSGKSNFFYAIQFVLSDEFSHLR-PE 59

Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
           RQALLHEGTGPRV+ AYVEI+FDN+D R+P
Sbjct: 60 QRQALLHEGTGPRVMTAYVEILFDNSDGRIP 90

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195446621|ref|XP_002070850.1| GK25447 [Drosophila willistoni] gi|194166935|gb|EDW81836.1| GK25447 [Drosophila willistoni]

 Score =  157 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 74/91 (81%), Positives = 84/91 (92%), Gaps = 1/91 (1%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          M+IKQ+II GFKSYK+QTVVEPFDKRHNVVVGRNGSGKSNFF+AIQFVLSDE T LR  +
Sbjct: 1  MHIKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHLR-PE 59

Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
           RQALLHEGTG RV++AYVEI+FDN+D+RVP
Sbjct: 60 QRQALLHEGTGARVISAYVEIIFDNSDNRVP 90

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195134412|ref|XP_002011631.1| GI10989 [Drosophila mojavensis] gi|193906754|gb|EDW05621.1| GI10989 [Drosophila mojavensis]

 Score =  157 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 74/91 (81%), Positives = 84/91 (92%), Gaps = 1/91 (1%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          M+IKQ+II GFKSYK+QTVVEPFDKRHNVVVGRNGSGKSNFF+AIQFVLSDE T LR  +
Sbjct: 1  MHIKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHLR-PE 59

Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
           RQALLHEGTG RV++AYVEI+FDN+D+RVP
Sbjct: 60 QRQALLHEGTGARVISAYVEIIFDNSDNRVP 90

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195392610|ref|XP_002054950.1| GJ19101 [Drosophila virilis] gi|194149460|gb|EDW65151.1| GJ19101 [Drosophila virilis]

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/91 (81%), Positives = 84/91 (92%), Gaps = 1/91 (1%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          M+IKQ+II GFKSYK+QTVVEPFDKRHNVVVGRNGSGKSNFF+AIQFVLSDE T LR  +
Sbjct: 1  MHIKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHLR-PE 59

Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
           RQALLHEGTG RV++AYVEI+FDN+D+RVP
Sbjct: 60 QRQALLHEGTGARVISAYVEIIFDNSDNRVP 90

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198468360|ref|XP_001354674.2| GA22046 [Drosophila pseudoobscura pseudoobscura] gi|198146378|gb|EAL31729.2| GA22046 [Drosophila pseudoobscura pseudoobscura]

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/91 (81%), Positives = 84/91 (92%), Gaps = 1/91 (1%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          M+IKQ+II GFKSYK+QTVVEPFDKRHNVVVGRNGSGKSNFF+AIQFVLSDE T LR  +
Sbjct: 1  MHIKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHLR-PE 59

Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
           RQ+LLHEGTG RV++AYVEI+FDNTD+RVP
Sbjct: 60 QRQSLLHEGTGARVISAYVEIIFDNTDNRVP 90

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195165821|ref|XP_002023737.1| GL19756 [Drosophila persimilis] gi|194105871|gb|EDW27914.1| GL19756 [Drosophila persimilis]

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/91 (81%), Positives = 84/91 (92%), Gaps = 1/91 (1%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          M+IKQ+II GFKSYK+QTVVEPFDKRHNVVVGRNGSGKSNFF+AIQFVLSDE T LR  +
Sbjct: 1  MHIKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHLR-PE 59

Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
           RQ+LLHEGTG RV++AYVEI+FDNTD+RVP
Sbjct: 60 QRQSLLHEGTGARVISAYVEIIFDNTDNRVP 90

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
FB|FBgn0015615	1231	Cap "Chromosome-associated pro	0.825	0.073	0.802	4.1e-34
RGD|62006	1191	Smc3 "structural maintenance o	0.825	0.075	0.714	2.3e-31
UNIPROTKB|P97690	1191	Smc3 "Structural maintenance o	0.825	0.075	0.714	2.3e-31
UNIPROTKB|O93309	1209	smc3 "Structural maintenance o	0.825	0.074	0.714	2.4e-31
UNIPROTKB|G3N365	1216	SMC3 "Structural maintenance o	0.825	0.074	0.714	2.4e-31
ZFIN|ZDB-GENE-030131-3196	1216	smc3 "structural maintenance o	0.825	0.074	0.725	2.4e-31
UNIPROTKB|A7Z065	1217	SMC3 "Structural maintenance o	0.825	0.073	0.714	2.4e-31
UNIPROTKB|E2R7T4	1217	SMC3 "Uncharacterized protein"	0.825	0.073	0.714	2.4e-31
UNIPROTKB|Q9UQE7	1217	SMC3 "Structural maintenance o	0.825	0.073	0.714	2.4e-31
UNIPROTKB|Q5R4K5	1217	SMC3 "Structural maintenance o	0.825	0.073	0.714	2.4e-31

FB|FBgn0015615 Cap "Chromosome-associated protein" [Drosophila melanogaster (taxid:7227)]

 Score = 383 (139.9 bits), Expect = 4.1e-34, P = 4.1e-34
 Identities = 73/91 (80%), Positives = 84/91 (92%)

Query:     1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
             M+IKQ+II GFKSYK+QTVVEPFDKRHNVVVGRNGSGKSNFF+AIQFVLSDE T LR  +
Sbjct:    32 MHIKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHLR-PE 90

Query:    61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
              RQ+LLHEGTG RV++AYVEI+FDN+D+RVP
Sbjct:    91 QRQSLLHEGTGARVISAYVEIIFDNSDNRVP 121

GO:0008278 "cohesin complex" evidence=ISS;NAS

GO:0007062 "sister chromatid cohesion" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0001737 "establishment of imaginal disc-derived wing hair orientation" evidence=IMP

RGD|62006 Smc3 "structural maintenance of chromosomes 3" [Rattus norvegicus (taxid:10116)]

 Score = 357 (130.7 bits), Expect = 2.3e-31, P = 2.3e-31
 Identities = 65/91 (71%), Positives = 82/91 (90%)

Query:     1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
             MYIKQVII GF+SY++QT+V+PF  +HNV+VGRNGSGKSNFF+AIQFVLSDE + LR  +
Sbjct:     1 MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLR-PE 59

Query:    61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
              R ALLHEGTGPRV++A+VEI+FDN+D+R+P
Sbjct:    60 QRLALLHEGTGPRVISAFVEIIFDNSDNRLP 90

GO:0000785 "chromatin" evidence=ISO;ISS

GO:0000800 "lateral element" evidence=ISO

GO:0000922 "spindle pole" evidence=ISO;ISS

GO:0003674 "molecular_function" evidence=ND

GO:0003682 "chromatin binding" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005604 "basement membrane" evidence=IDA

GO:0005634 "nucleus" evidence=ISO

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0006275 "regulation of DNA replication" evidence=ISO;ISS

GO:0006281 "DNA repair" evidence=IEA

GO:0007052 "mitotic spindle organization" evidence=ISO;ISS

GO:0007062 "sister chromatid cohesion" evidence=ISO

GO:0007067 "mitosis" evidence=IEA

GO:0007126 "meiosis" evidence=ISO;ISS

GO:0007165 "signal transduction" evidence=ISO;ISS

GO:0016363 "nuclear matrix" evidence=ISO;ISS

GO:0019827 "stem cell maintenance" evidence=ISO

GO:0030893 "meiotic cohesin complex" evidence=ISO;ISS

GO:0032876 "negative regulation of DNA endoreduplication" evidence=ISO

GO:0034991 "nuclear meiotic cohesin complex" evidence=ISO

GO:0036033 "mediator complex binding" evidence=ISO

GO:0045502 "dynein binding" evidence=ISO;ISS

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0051276 "chromosome organization" evidence=IEA

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|P97690 Smc3 "Structural maintenance of chromosomes protein 3" [Rattus norvegicus (taxid:10116)]

 Score = 357 (130.7 bits), Expect = 2.3e-31, P = 2.3e-31
 Identities = 65/91 (71%), Positives = 82/91 (90%)

Query:     1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
             MYIKQVII GF+SY++QT+V+PF  +HNV+VGRNGSGKSNFF+AIQFVLSDE + LR  +
Sbjct:     1 MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLR-PE 59

Query:    61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
              R ALLHEGTGPRV++A+VEI+FDN+D+R+P
Sbjct:    60 QRLALLHEGTGPRVISAFVEIIFDNSDNRLP 90

GO:0051276 "chromosome organization" evidence=IEA

UNIPROTKB|O93309 smc3 "Structural maintenance of chromosomes protein 3" [Xenopus laevis (taxid:8355)]

 Score = 357 (130.7 bits), Expect = 2.4e-31, P = 2.4e-31
 Identities = 65/91 (71%), Positives = 82/91 (90%)

Query:     1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
             MYIKQVII GF+SY++QT+V+PF  +HNV+VGRNGSGKSNFF+AIQFVLSDE + LR  +
Sbjct:     1 MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLR-PE 59

Query:    61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
              R ALLHEGTGPRV++A+VEI+FDN+D+R+P
Sbjct:    60 QRLALLHEGTGPRVISAFVEIIFDNSDNRLP 90

GO:0000785 "chromatin" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0006275 "regulation of DNA replication" evidence=ISS

GO:0030893 "meiotic cohesin complex" evidence=ISS

UNIPROTKB|G3N365 SMC3 "Structural maintenance of chromosomes protein 3" [Bos taurus (taxid:9913)]

 Score = 357 (130.7 bits), Expect = 2.4e-31, P = 2.4e-31
 Identities = 65/91 (71%), Positives = 82/91 (90%)

Query:     1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
             MYIKQVII GF+SY++QT+V+PF  +HNV+VGRNGSGKSNFF+AIQFVLSDE + LR  +
Sbjct:     1 MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLR-PE 59

Query:    61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
              R ALLHEGTGPRV++A+VEI+FDN+D+R+P
Sbjct:    60 QRLALLHEGTGPRVISAFVEIIFDNSDNRLP 90

GO:0051276 "chromosome organization" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-030131-3196 smc3 "structural maintenance of chromosomes 3" [Danio rerio (taxid:7955)]

 Score = 357 (130.7 bits), Expect = 2.4e-31, P = 2.4e-31
 Identities = 66/91 (72%), Positives = 82/91 (90%)

Query:     1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
             MYIKQVII GF+SY++QTVV+PF  +HNV+VGRNGSGKSNFF+AIQFVLSDE + LR  +
Sbjct:     1 MYIKQVIIQGFRSYRDQTVVDPFGSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLR-PE 59

Query:    61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
              R ALLHEGTGPRV++A+VEI+FDN+D+R+P
Sbjct:    60 QRLALLHEGTGPRVISAFVEIIFDNSDNRLP 90

GO:0005524 "ATP binding" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0051276 "chromosome organization" evidence=IEA

GO:0007064 "mitotic sister chromatid cohesion" evidence=IMP

UNIPROTKB|A7Z065 SMC3 "Structural maintenance of chromosomes protein 3" [Bos taurus (taxid:9913)]

 Score = 357 (130.7 bits), Expect = 2.4e-31, P = 2.4e-31
 Identities = 65/91 (71%), Positives = 82/91 (90%)

Query:     1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
             MYIKQVII GF+SY++QT+V+PF  +HNV+VGRNGSGKSNFF+AIQFVLSDE + LR  +
Sbjct:     1 MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLR-PE 59

Query:    61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
              R ALLHEGTGPRV++A+VEI+FDN+D+R+P
Sbjct:    60 QRLALLHEGTGPRVISAFVEIIFDNSDNRLP 90

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045502 "dynein binding" evidence=IEA

GO:0036033 "mediator complex binding" evidence=IEA

GO:0034991 "nuclear meiotic cohesin complex" evidence=IEA

GO:0032876 "negative regulation of DNA endoreduplication" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007126 "meiosis" evidence=IEA

GO:0007052 "mitotic spindle organization" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0000800 "lateral element" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

GO:0051276 "chromosome organization" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E2R7T4 SMC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 357 (130.7 bits), Expect = 2.4e-31, P = 2.4e-31
 Identities = 65/91 (71%), Positives = 82/91 (90%)

Query:     1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
             MYIKQVII GF+SY++QT+V+PF  +HNV+VGRNGSGKSNFF+AIQFVLSDE + LR  +
Sbjct:     1 MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLR-PE 59

Query:    61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
              R ALLHEGTGPRV++A+VEI+FDN+D+R+P
Sbjct:    60 QRLALLHEGTGPRVISAFVEIIFDNSDNRLP 90

GO:0051276 "chromosome organization" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q9UQE7 SMC3 "Structural maintenance of chromosomes protein 3" [Homo sapiens (taxid:9606)]

 Score = 357 (130.7 bits), Expect = 2.4e-31, P = 2.4e-31
 Identities = 65/91 (71%), Positives = 82/91 (90%)

Query:     1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
             MYIKQVII GF+SY++QT+V+PF  +HNV+VGRNGSGKSNFF+AIQFVLSDE + LR  +
Sbjct:     1 MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLR-PE 59

Query:    61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
              R ALLHEGTGPRV++A+VEI+FDN+D+R+P
Sbjct:    60 QRLALLHEGTGPRVISAFVEIIFDNSDNRLP 90

GO:0005524 "ATP binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0000800 "lateral element" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0034991 "nuclear meiotic cohesin complex" evidence=IEA

GO:0036033 "mediator complex binding" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0007052 "mitotic spindle organization" evidence=IEP

GO:0007062 "sister chromatid cohesion" evidence=IMP;NAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0016363 "nuclear matrix" evidence=IDA

GO:0008278 "cohesin complex" evidence=NAS

GO:0003777 "microtubule motor activity" evidence=NAS

GO:0007165 "signal transduction" evidence=IDA

GO:0000922 "spindle pole" evidence=IDA

GO:0045502 "dynein binding" evidence=IDA

GO:0007126 "meiosis" evidence=IDA

GO:0006275 "regulation of DNA replication" evidence=IMP

GO:0000785 "chromatin" evidence=IDA

GO:0030893 "meiotic cohesin complex" evidence=IDA

GO:0005604 "basement membrane" evidence=TAS

GO:0007067 "mitosis" evidence=TAS

GO:0005634 "nucleus" evidence=TAS

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0007091 "metaphase/anaphase transition of mitotic cell cycle" evidence=TAS

GO:0032876 "negative regulation of DNA endoreduplication" evidence=IMP

UNIPROTKB|Q5R4K5 SMC3 "Structural maintenance of chromosomes protein 3" [Pongo abelii (taxid:9601)]

 Score = 357 (130.7 bits), Expect = 2.4e-31, P = 2.4e-31
 Identities = 65/91 (71%), Positives = 82/91 (90%)

Query:     1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
             MYIKQVII GF+SY++QT+V+PF  +HNV+VGRNGSGKSNFF+AIQFVLSDE + LR  +
Sbjct:     1 MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLR-PE 59

Query:    61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
              R ALLHEGTGPRV++A+VEI+FDN+D+R+P
Sbjct:    60 QRLALLHEGTGPRVISAFVEIIFDNSDNRLP 90

GO:0000785 "chromatin" evidence=ISS

GO:0006275 "regulation of DNA replication" evidence=ISS

GO:0030893 "meiotic cohesin complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CW03	SMC3_MOUSE	No assigned EC number	0.7142	0.8256	0.0739	yes	N/A
Q5R4K5	SMC3_PONAB	No assigned EC number	0.7142	0.8256	0.0739	yes	N/A
O97594	SMC3_BOVIN	No assigned EC number	0.7142	0.8256	0.0738	yes	N/A
Q00737	SUDA_EMENI	No assigned EC number	0.6923	0.8256	0.0740	yes	N/A
Q56YN8	SMC3_ARATH	No assigned EC number	0.6703	0.8256	0.0747	yes	N/A
Q9UQE7	SMC3_HUMAN	No assigned EC number	0.7142	0.8256	0.0739	yes	N/A
O42649	SMC3_SCHPO	No assigned EC number	0.6263	0.8256	0.0753	yes	N/A
P47037	SMC3_YEAST	No assigned EC number	0.5454	0.7981	0.0707	yes	N/A
P97690	SMC3_RAT	No assigned EC number	0.7142	0.8256	0.0755	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	109
cd03272	243	cd03272, ABC_SMC3_euk, ATP-binding cassette domain	2e-53
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	5e-35
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-30
cd03239	178	cd03239, ABC_SMC_head, The SMC head domain belongs	1e-25
cd03273	251	cd03273, ABC_SMC2_euk, ATP-binding cassette domain	1e-22
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-18
cd03278	197	cd03278, ABC_SMC_barmotin, ATP-binding cassette do	1e-18
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-17
cd03275	247	cd03275, ABC_SMC1_euk, ATP-binding cassette domain	2e-16
pfam13476	204	pfam13476, AAA_23, AAA domain	1e-12
cd03227	162	cd03227, ABC_Class2, ATP-binding cassette domain o	1e-12
cd03274	212	cd03274, ABC_SMC4_euk, ATP-binding cassette domain	8e-12
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	5e-11
PRK00064	361	PRK00064, recF, recombination protein F; Reviewed	2e-09
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	8e-08
COG1106	371	COG1106, COG1106, Predicted ATPases [General funct	2e-07
COG1195	363	COG1195, RecF, Recombinational DNA repair ATPase (	2e-07
cd03240	204	cd03240, ABC_Rad50, ATP-binding cassette domain of	6e-07
COG3593	581	COG3593, COG3593, Predicted ATP-dependent endonucl	2e-06
cd03242	270	cd03242, ABC_RecF, ATP-binding cassette domain of	8e-06
TIGR00611	365	TIGR00611, recf, recF protein	8e-05
cd03279	213	cd03279, ABC_sbcCD, ATP-binding cassette domain of	1e-04
TIGR00618	1042	TIGR00618, sbcc, exonuclease SbcC	1e-04
pfam13304	256	pfam13304, AAA_21, AAA domain	2e-04
pfam13555	60	pfam13555, AAA_29, P-loop containing region of AAA	5e-04
PRK01156	895	PRK01156, PRK01156, chromosome segregation protein	5e-04
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	6e-04
COG4637	373	COG4637, COG4637, Predicted ATPase [General functi	7e-04
pfam13175	320	pfam13175, AAA_15, AAA ATPase domain	7e-04
pfam13166	713	pfam13166, AAA_13, AAA domain	9e-04

>gnl|CDD|213239 cd03272, ABC_SMC3_euk, ATP-binding cassette domain of eukaryotic SMC3 proteins

 Score =  166 bits (423), Expect = 2e-53
 Identities = 72/109 (66%), Positives = 86/109 (78%), Gaps = 5/109 (4%)

Query: 3   IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSR 62
           IKQVII GFKSYK+QTV+EPF  +HNVVVGRNGSGKSNFF AI+FVLSDE T LR  + R
Sbjct: 1   IKQVIIQGFKSYKDQTVIEPFSPKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLR-EEQR 59

Query: 63  QALLHEGTGPRVVNAYVEIVFDNTDHRVPGF---IRCRSTSVDLYRCSY 108
           QALLHEG+GP V++AYVEI+FDN+D+R P     +R R T + L +  Y
Sbjct: 60  QALLHEGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRT-IGLKKDEY 107

The structural maintenance of chromosomes (SMC) proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Length = 243

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score =  126 bits (317), Expect = 5e-35
 Identities = 43/92 (46%), Positives = 55/92 (59%), Gaps = 4/92 (4%)

Query: 2  YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDES-TSLRHSD 60
          Y+K++ I GFKSY + TV+ PF      +VG NGSGKSN   AI FVL + S  SLR S+
Sbjct: 1  YLKRIEIEGFKSYAK-TVILPFSPGFTAIVGPNGSGKSNILDAILFVLGERSAKSLR-SE 58

Query: 61 SRQALLHEG-TGPRVVNAYVEIVFDNTDHRVP 91
              L+H   +G  V +A V I FDN D  +P
Sbjct: 59 RLSDLIHYSKSGAFVNSAEVTITFDNEDKELP 90

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score =  111 bits (280), Expect = 5e-30
 Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 5/97 (5%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTS-LRHS 59
          MY+K++ + GFKS+ + T +  F      +VG NGSGKSN   AI+FVL ++S   LR +
Sbjct: 1  MYLKRIELKGFKSFADPTEI-NFSPGFTAIVGPNGSGKSNIVDAIRFVLGEQSAKNLR-A 58

Query: 60 DSRQALLHEGTG--PRVVNAYVEIVFDNTDHRVPGFI 94
               L+  G+G       A VE+ FDN+D+ +P   
Sbjct: 59 SKMSDLIFAGSGNRKPANYAEVELTFDNSDNTLPLEY 95

Length = 1163

>gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the ATP-binding cassette superfamily

 Score = 93.9 bits (234), Expect = 1e-25
 Identities = 36/83 (43%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 3  IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSR 62
          IKQ+ +  FKSY+++TVV   +   N +VG NGSGKSN   AI FVL  ++  LR   S 
Sbjct: 1  IKQITLKNFKSYRDETVVGGSN-SFNAIVGPNGSGKSNIVDAICFVLGGKAAKLR-RGSL 58

Query: 63 QALLHEGTGPRVVNAYVEIVFDN 85
            L   G    + +A VEI FD 
Sbjct: 59 LFLAGGGVKAGINSASVEITFDK 81

The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. Length = 178

>gnl|CDD|213240 cd03273, ABC_SMC2_euk, ATP-binding cassette domain of eukaryotic SMC2 proteins

 Score = 87.7 bits (218), Expect = 1e-22
 Identities = 41/103 (39%), Positives = 58/103 (56%), Gaps = 2/103 (1%)

Query: 1   MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
           M+IK++I+ GFKSY  +TV+  FD + N + G NGSGKSN   AI FVL   + S   + 
Sbjct: 1   MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRAS 60

Query: 61  SRQALLHEGTGPRVVNAYVEIVFDNTDHRV--PGFIRCRSTSV 101
           + Q L+++     +  A V IVFDN+D      GF      +V
Sbjct: 61  NLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103

The structural maintenance of chromosomes (SMC) proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Length = 251

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 78.9 bits (195), Expect = 1e-18
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 5/94 (5%)

Query: 2  YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDEST-SLRHSD 60
           +K++ + GFKS+ + T +  FDK    +VG NG GKSN   AI++VL ++S  +LR   
Sbjct: 1  RLKKLELAGFKSFADPTTI-NFDKGITGIVGPNGCGKSNIVDAIRWVLGEQSAKALR-GG 58

Query: 61 SRQALLHEGTG--PRVVNAYVEIVFDNTDHRVPG 92
            + ++  G+     +  A VE+VFDN+D  +PG
Sbjct: 59 KMEDVIFNGSETRKPLSLAEVELVFDNSDGLLPG 92

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin, a member of the SMC protein family

 Score = 76.0 bits (188), Expect = 1e-18
 Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 3  IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDEST-SLRHSDS 61
          +K++ + GFKS+ ++T + PF      +VG NGSGKSN   AI++VL ++S  SLR  + 
Sbjct: 1  LKKLELKGFKSFADKTTI-PFPPGLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLR-GEK 58

Query: 62 RQALLHEGTGPR--VVNAYVEIVFDNTDHR 89
             ++  G+  R     A V + FDN+D R
Sbjct: 59 MSDVIFAGSETRKPANFAEVTLTFDNSDGR 88

Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Length = 197

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 74.7 bits (184), Expect = 4e-17
 Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 3/99 (3%)

Query: 2  YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDS 61
          YI+++ +  FKS+ ++ V+ PF K   V+ G NGSGKSN   AI F L   S+    ++ 
Sbjct: 1  YIERIELENFKSFGKKKVI-PFSKGFTVISGPNGSGKSNIGDAILFALGLSSSKAMRAER 59

Query: 62 RQALLHEGTGPRVVN-AYVEIVFDNTDHRVPGFIR-CRS 98
             L+  G   +  N AYV + F N D + P  +   R 
Sbjct: 60 LSDLISNGKNGQSGNEAYVTVTFKNDDGKFPDELEVVRR 98

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|213242 cd03275, ABC_SMC1_euk, ATP-binding cassette domain of eukaryotic SMC1 proteins

 Score = 71.4 bits (176), Expect = 2e-16
 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 4/105 (3%)

Query: 3   IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSR 62
           +K++ +  FKSYK + V+ PFD R   ++G NGSGKSN   AI FVL ++S+ LR  + +
Sbjct: 1   LKRLELENFKSYKGRHVIGPFD-RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLK 59

Query: 63  QALLHEG--TGPRVVNAYVEIVFDNTDHRVPGFIRCRSTSVDLYR 105
             L++      P   +AYV  V+++ D     F R  +     YR
Sbjct: 60  D-LIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSYR 103

The structural maintenance of chromosomes (SMC) proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Length = 247

>gnl|CDD|222160 pfam13476, AAA_23, AAA domain

 Score = 61.0 bits (148), Expect = 1e-12
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 5  QVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQA 64
          ++ I  F S+K+  +   F K   ++ G NGSGK+    AI++ L  +++ L+ S  R  
Sbjct: 1  KLTIKNFGSFKDLEID--FSKGLTLIYGPNGSGKTTILDAIRWALYGKTSRLKKSKGRGI 58

Query: 65 LLHE---GTGPRVVNAYVEIVFDNTD 87
          +  +            YVEI F+N  
Sbjct: 59 VKGDIEIEKDEGKKKTYVEITFENNK 84

Length = 204

>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins

 Score = 59.7 bits (145), Expect = 1e-12
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 8/79 (10%)

Query: 5  QVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQA 64
          ++++  F SY     V   +    ++ G NGSGKS    AI   L    ++ R       
Sbjct: 1  KIVLGRFPSYFVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRR------ 54

Query: 65 LLHEGTGPRVVNAYVEIVF 83
              G     + A V    
Sbjct: 55 --RSGVKAGCIVAAVSAEL 71

ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162

>gnl|CDD|213241 cd03274, ABC_SMC4_euk, ATP-binding cassette domain of eukaryotic SMC4 proteins

 Score = 58.5 bits (142), Expect = 8e-12
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          + I ++++  FKSY  + V+ PF K  + +VG NGSGKSN   ++ FV    ++ +R   
Sbjct: 1  LIITKLVLENFKSYAGEQVIGPFHKSFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQK- 59

Query: 61 SRQALLHEGTG-PRVVNAYVEIVF 83
              L+H   G P + +  VE+ F
Sbjct: 60 KLSDLIHNSAGHPNLDSCSVEVHF 83

The structural maintenance of chromosomes (SMC) proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Length = 212

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 57.5 bits (139), Expect = 5e-11
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVL---SDESTSLR 57
          M I ++ +  F+S+K+  + + FD    ++VG NG+GKS+   AI F L   +    +  
Sbjct: 1  MKILRLRLKNFRSFKDIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALYGKTPRLGAFS 60

Query: 58 HSDSRQALLHEGTGPRVVNAYVEIVFDNTDHR 89
            D  +A      G +   A VE+ F+    +
Sbjct: 61 LDDLIRA------GEKS--ASVELEFEVNGKK 84

Length = 908

>gnl|CDD|234608 PRK00064, recF, recombination protein F; Reviewed

 Score = 52.9 bits (128), Expect = 2e-09
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 11/83 (13%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDEST--SLR- 57
          MY+ ++ +  F++Y+E  +        NV+VG NG GK+N   AI  +    +   S R 
Sbjct: 1  MYLTRLSLTDFRNYEELDL--ELSPGVNVLVGENGQGKTNLLEAIYLL----APGRSHRT 54

Query: 58 HSDSRQALLHEGTGPRVVNAYVE 80
            D    L+  G    V++  VE
Sbjct: 55 ARDKE--LIRFGAEAAVIHGRVE 75

Length = 361

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 48.5 bits (116), Expect = 8e-08
 Identities = 21/45 (46%), Positives = 32/45 (71%), Gaps = 2/45 (4%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAI 45
          M I+++ I  F+S+K  +VVE FD   N+++G+NGSGKS+   AI
Sbjct: 1  MKIEELKIKNFRSHKS-SVVE-FDDGINLIIGQNGSGKSSILEAI 43

Length = 880

>gnl|CDD|224031 COG1106, COG1106, Predicted ATPases [General function prediction only]

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 3  IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLS 50
          IK   I  FKS++E   +E F  + N++ G NG+GKSN   A+ F+  
Sbjct: 2  IKSFKIKNFKSFRE-LELEDF-GKINIIYGANGAGKSNLLEALYFLKG 47

Length = 371

>gnl|CDD|224116 COG1195, RecF, Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]

 Score = 47.2 bits (113), Expect = 2e-07
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQF 47
          MY+  +++  F++Y E  +        NV+VG NG GK+N   AI  
Sbjct: 1  MYLLSLLLRNFRNYAELDL--DLSPGVNVLVGENGQGKTNLLEAIYL 45

Length = 363

>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50

 Score = 45.3 bits (108), Expect = 6e-07
 Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 3  IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLS-DESTSLRHSDS 61
          I ++ I   +S+ E++ +E F     ++VG+NG+GK+    A+++ L+ +   + +    
Sbjct: 1  IDKLSIRNIRSFHERSEIE-FFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAH 59

Query: 62 RQALLHEGTGPRVVNAYVEIVFDNTD 87
             L+ EG     V A V++ F+N +
Sbjct: 60 DPKLIREGE----VRAQVKLAFENAN 81

The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204

>gnl|CDD|226121 COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTS 55
          M++++V I  F+     ++   F++  NV++G N SGKS+   A++ +L  ES  
Sbjct: 1  MHLERVKIKNFRGINRLSL--EFEEGLNVLIGENNSGKSSLLDALRLLLDPESDL 53

Length = 581

>gnl|CDD|213209 cd03242, ABC_RecF, ATP-binding cassette domain of RecF

 Score = 42.3 bits (100), Expect = 8e-06
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 11 FKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQF 47
          F++Y E  +   F+    V+VG N  GK+N   AI  
Sbjct: 9  FRNYAELEL--EFEPGVTVLVGENAQGKTNLLEAISL 43

RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 270

>gnl|CDD|233051 TIGR00611, recf, recF protein

 Score = 39.6 bits (93), Expect = 8e-05
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQF 47
          MY+ ++ +  F++Y    +        NV+VG NG GK+N   AI +
Sbjct: 1  MYLSRLELTDFRNYDAVDL--ELSPGVNVIVGPNGQGKTNLLEAIYY 45

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 365

>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 19/110 (17%)

Query: 1   MYIKQVIIHGFKSYKEQTVVEPFDKRHN----VVVGRNGSGKSNFFFAIQFVLSDESTSL 56
           M   ++ +  F  ++E+ V++ F    N    ++ G  G+GKS    AI + L  ++   
Sbjct: 1   MKPLKLELKNFGPFREEQVID-FTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRY 59

Query: 57  RHSDSRQALLHEGTGPRVVNAYVEIVFDNTD-----HRVPG-----FIRC 96
              ++ +++   G       A V   F          R  G     F R 
Sbjct: 60  GRQENLRSVFAPGEDT----AEVSFTFQLGGKKYRVERSRGLDYDQFTRI 105

SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. Length = 213

>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 2/98 (2%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVV-GRNGSGKSNFFFAIQFVLSDESTSLRHS 59
          M   ++ +  F SYK    ++        ++ G+ G+GK+    AI + L  +       
Sbjct: 1  MKPLRLTLKNFGSYKGTHTIDFTALGPIFLICGKTGAGKTTLLDAITYALYGKLPRRSEV 60

Query: 60 DSRQALLHEGTGPRVVNAYVEIVFDNTDHRVPGFIRCR 97
                L+         A +E       +RV   +RC 
Sbjct: 61 IRSLNSLYAAPSEAAF-AELEFSLGTKIYRVHRTLRCT 97

All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042

>gnl|CDD|222036 pfam13304, AAA_21, AAA domain

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 28 NVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSR 62
          NV++G NGSGKSN   A+  +L   S  L      
Sbjct: 2  NVIIGPNGSGKSNLLKALALLLLLLSLGLTLDRGL 36

Length = 256

>gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain

 Score = 35.2 bits (82), Expect = 5e-04
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 22 PFDKRHNVVVGRNGSGKSNFFFAIQFVL 49
          P D +  ++ G +GSGKS    AIQ +L
Sbjct: 18 PIDPKGTLLTGPSGSGKSTLIDAIQTLL 45

Length = 60

>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional

 Score = 37.6 bits (87), Expect = 5e-04
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          M IK++ +  F S+ +  +   FD   N++ G+NG+GKS+   AI+F L  +  + +  D
Sbjct: 1  MIIKRIRLKNFLSHDDSEIE--FDTGINIITGKNGAGKSSIVDAIRFALFTDKRTEKIED 58

Length = 895

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 36.5 bits (85), Expect = 6e-04
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 5/43 (11%)

Query: 12 KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVL 49
            Y  +T ++             +VG NGSGKS    AI  +L
Sbjct: 7  FRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL 49

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|226984 COG4637, COG4637, Predicted ATPase [General function prediction only]

 Score = 37.1 bits (86), Expect = 7e-04
 Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 7/73 (9%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          M +  + +  ++S+     +E   +R NV++G NG+GKSNF+ A++ +      +L+ + 
Sbjct: 1  MMLVSIKVKNYRSF-RSLDLEI--RRVNVIIGANGAGKSNFYDALRLLADAVRGNLQQAL 57

Query: 61 SRQ----ALLHEG 69
           R+     +L  G
Sbjct: 58 QREGGLNEVLTRG 70

Length = 373

>gnl|CDD|221957 pfam13175, AAA_15, AAA ATPase domain

 Score = 37.0 bits (86), Expect = 7e-04
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 3  IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          +K++ I  FKS K    +   ++  NV++G NGSGK+    A+  +   +   +  SD
Sbjct: 1  LKKIKIKNFKSIKNLEEIS-LNEGINVIIGENGSGKTTILEALDNLKEKKKIYISISD 57

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Length = 320

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 36.9 bits (86), Expect = 9e-04
 Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 7/88 (7%)

Query: 10 GFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNF--FFAIQFVLSDESTSLRHSDSRQALLH 67
             SY +        K+ N++ GRNGSGK+     F     L        +  S +    
Sbjct: 1  NVASYDDWGNELDDLKKVNLIYGRNGSGKTTLSRLFR-SLELGRIHEKYSNC-SFEWKSD 58

Query: 68 EGTGPRVVN-AYVEIVFDNTDHRVPGFI 94
          +    RV N  +VE  FD  +  + G  
Sbjct: 59 DPLKVRVYNRDFVEENFDEGE--IKGVF 84

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	109
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.82
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.8
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.77
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.77
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.75
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.75
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.74
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.74
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.74
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.73
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.73
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.71
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.71
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.7
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.69
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.69
KOG0964|consensus	1200		99.67
PRK00064	361	recF recombination protein F; Reviewed	99.67
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.66
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.66
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.65
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.65
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	99.65
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.65
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.65
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.64
PRK14079	349	recF recombination protein F; Provisional	99.64
KOG0018|consensus	1141		99.64
PRK02224	880	chromosome segregation protein; Provisional	99.63
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.63
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.63
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.62
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.62
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.62
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.62
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.62
PRK01156	895	chromosome segregation protein; Provisional	99.62
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.62
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.61
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.61
PRK03918	880	chromosome segregation protein; Provisional	99.6
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.6
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.6
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.6
PF13555	62	AAA_29: P-loop containing region of AAA domain	99.6
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.6
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.6
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.6
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.6
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.6
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.6
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.59
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.59
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.59
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.59
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.59
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.59
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.59
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.59
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.59
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.59
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.59
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.59
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.59
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.58
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.58
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.58
TIGR00611	365	recf recF protein. All proteins in this family for	99.58
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.58
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.58
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.58
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.58
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.58
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.58
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.58
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.58
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.58
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.58
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.58
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.58
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.57
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.57
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.57
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.57
COG1195	363	RecF Recombinational DNA repair ATPase (RecF pathw	99.57
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.57
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.57
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.57
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.57
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.57
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.57
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.57
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.57
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.57
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.57
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.57
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.56
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.56
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.56
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.56
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.56
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.56
KOG0933|consensus	1174		99.56
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.56
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.56
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.56
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.56
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.56
KOG0996|consensus	1293		99.56
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.56
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.56
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.56
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.56
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.56
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.56
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.56
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.56
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.56
PRK10908	222	cell division protein FtsE; Provisional	99.56
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.55
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.55
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.55
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.55
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.55
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.55
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.55
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.55
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.55
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.55
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.55
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.55
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.55
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.55
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.55
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.55
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.55
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.55
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.54
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.54
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.54
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.54
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.54
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.54
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.54
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.54
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.54
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.54
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.54
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.54
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.54
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.54
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.54
COG4559	259	ABC-type hemin transport system, ATPase component	99.54
cd03246	173	ABCC_Protease_Secretion This family represents the	99.54
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.54
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.54
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.54
COG1123	539	ATPase components of various ABC-type transport sy	99.54
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.53
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.53
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.53
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.53
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.53
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.53
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.53
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.53
PRK10246	1047	exonuclease subunit SbcC; Provisional	99.53
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.53
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.53
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.53
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.53
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.53
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.53
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.53
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.53
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.53
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.53
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.53
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.52
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.52
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.52
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.52
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.52
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.52
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.52
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.52
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.52
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.51
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.51
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.51
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.51
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.51
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.51
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.51
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.51
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.51
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.51
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.51
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.51
PHA02562	562	46 endonuclease subunit; Provisional	99.51
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.51
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.51
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.51
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.51
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.51
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.51
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.5
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.5
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.5
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.5
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.5
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.5
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.5
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.5
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.5
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.5
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.5
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.49
PRK10938	490	putative molybdenum transport ATP-binding protein	99.49
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.49
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.49
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.49
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.49
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.49
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.49
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.49
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.49
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.49
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.49
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.49
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.49
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.49
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.49
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.49
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.49
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.48
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.48
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.48
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.48
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.47
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.47
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.47
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.47
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.47
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.47
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.47
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.47
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.47
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.47
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.47
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.47
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.47
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	99.47
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.47
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.47
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.47
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.46
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.46
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.46
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.46
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.46
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.46
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.46
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.45
PF11398	373	DUF2813: Protein of unknown function (DUF2813); In	99.45
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.45
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.45
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.44
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.44
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.44
PRK10938	490	putative molybdenum transport ATP-binding protein	99.44
PRK10869	553	recombination and repair protein; Provisional	99.44
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.44
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.44
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.44
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.43
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.43
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.43
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.43
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.42
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.42
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.42
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.42
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.42
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.42
PRK11147	635	ABC transporter ATPase component; Reviewed	99.42
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.42
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.41
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.41
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.41
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.41
COG4181	228	Predicted ABC-type transport system involved in ly	99.41
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.4
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.4
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.4
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.4
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.4
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.4
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.4
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.4
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.4
PRK11147	635	ABC transporter ATPase component; Reviewed	99.39
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.39
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.39
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.39
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.39
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.38
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.38
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.38
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.38
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.38
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.38
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.38
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.38
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.38
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.38
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.37
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.37
COG1123	539	ATPase components of various ABC-type transport sy	99.37
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	99.37
KOG0979|consensus	1072		99.37
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.36
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.36
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.36
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.36
COG0488	530	Uup ATPase components of ABC transporters with dup	99.36
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.36
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.35
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.35
PLN03073	718	ABC transporter F family; Provisional	99.34
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.34
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.34
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.34
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.34
KOG0057|consensus	591		99.34
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.34
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.34
COG4988	559	CydD ABC-type transport system involved in cytochr	99.33
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.33
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.32
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.32
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.32
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.32
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.3
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.3
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.3
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.3
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.29
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.29
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.27
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.27
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.27
PLN03130	1622	ABC transporter C family member; Provisional	99.26
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.25
COG4172	534	ABC-type uncharacterized transport system, duplica	99.25
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.25
PRK13409	590	putative ATPase RIL; Provisional	99.25
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.25
PLN03232	1495	ABC transporter C family member; Provisional	99.25
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.24
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.24
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.24
PLN03211	659	ABC transporter G-25; Provisional	99.23
PTZ00243	1560	ABC transporter; Provisional	99.23
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.23
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.23
PRK04863	1486	mukB cell division protein MukB; Provisional	99.23
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.22
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.22
KOG0056|consensus	790		99.21
KOG0055|consensus	1228		99.2
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.2
KOG0058|consensus	716		99.19
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.18
PLN03073	718	ABC transporter F family; Provisional	99.18
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.17
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.17
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.16
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.15
COG3950	440	Predicted ATP-binding protein involved in virulenc	99.15
COG0488	530	Uup ATPase components of ABC transporters with dup	99.14
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.12
COG4987	573	CydC ABC-type transport system involved in cytochr	99.12
COG3593	581	Predicted ATP-dependent endonuclease of the OLD fa	99.11
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.11
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.11
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.1
PF13175	415	AAA_15: AAA ATPase domain	99.1
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.1
COG1106	371	Predicted ATPases [General function prediction onl	99.08
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.07
PRK13409	590	putative ATPase RIL; Provisional	99.07
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.06
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.03
KOG0055|consensus	1228		99.02
COG4637	373	Predicted ATPase [General function prediction only	99.02
KOG0054|consensus	1381		99.01
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.01
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	98.99
PLN03140	1470	ABC transporter G family member; Provisional	98.99
PLN03130	1622	ABC transporter C family member; Provisional	98.98
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	98.98
COG4172	534	ABC-type uncharacterized transport system, duplica	98.97
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	98.97
PLN03140	1470	ABC transporter G family member; Provisional	98.95
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	98.94
PLN03232	1495	ABC transporter C family member; Provisional	98.94
KOG0250|consensus	1074		98.94
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	98.93
PTZ00243	1560	ABC transporter; Provisional	98.93
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	98.91
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.86
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	98.82
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.77
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.76
KOG0059|consensus	885		98.75
KOG0061|consensus	613		98.74
KOG0927|consensus	614		98.73
KOG0962|consensus	1294		98.73
KOG0062|consensus	582		98.73
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	98.68
COG3910	233	Predicted ATPase [General function prediction only	98.65
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	98.65
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	98.64
KOG2355|consensus	291		98.63
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.62
COG4178	604	ABC-type uncharacterized transport system, permeas	98.61
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	98.61
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	98.58
KOG0927|consensus	614		98.57
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.57
PRK09825	176	idnK D-gluconate kinase; Provisional	98.54
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.52
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.51
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	98.51
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.49
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.48
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.48
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.47
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.42
KOG0060|consensus	659		98.4
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.4
KOG0065|consensus	1391		98.4
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	98.4
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.38
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.37
PF04310	227	MukB: MukB N-terminal; InterPro: IPR007406 This is	98.37
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	98.37
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.36
PRK00300	205	gmk guanylate kinase; Provisional	98.33
KOG0054|consensus	1381		98.33
KOG0066|consensus	807		98.3
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	98.27
PRK05480	209	uridine/cytidine kinase; Provisional	98.25
smart00382	148	AAA ATPases associated with a variety of cellular	98.25
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	98.24
COG4938	374	Uncharacterized conserved protein [Function unknow	98.24
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.23
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	98.22
KOG0064|consensus	728		98.22
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.22
PRK10416	318	signal recognition particle-docking protein FtsY;	98.22
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	98.22
PLN02796	347	D-glycerate 3-kinase	98.2
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	98.18
COG4717	984	Uncharacterized conserved protein [Function unknow	98.18
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	98.17
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	98.16
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.15
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	98.15
PRK00098	298	GTPase RsgA; Reviewed	98.15
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.15
PRK08149	428	ATP synthase SpaL; Validated	98.14
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.13
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	98.12
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.11
PRK01889	356	GTPase RsgA; Reviewed	98.11
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	98.11
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.09
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.09
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	98.09
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	98.08
PRK09862	506	putative ATP-dependent protease; Provisional	98.06
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.06
PLN03046	460	D-glycerate 3-kinase; Provisional	98.05
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.04
KOG0066|consensus	807		98.04
PRK14738	206	gmk guanylate kinase; Provisional	98.04
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	98.04
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.02
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	98.02
PRK03846	198	adenylylsulfate kinase; Provisional	98.01
PRK07261	171	topology modulation protein; Provisional	98.01
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.01
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.01
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	98.01
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.99
PRK07429	327	phosphoribulokinase; Provisional	97.99
PLN02318	656	phosphoribulokinase/uridine kinase	97.99
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.99

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.82  E-value=1.7e-19  Score=121.03  Aligned_cols=87  Identities=45%  Similarity=0.675  Sum_probs=66.7

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCc-ccccccchhhhhhhcCCCCceeeEEE
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDES-TSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+|++|++.||++|.+...+.+|++++++|+||||||||||++||++++.+.. +.++..+ ..+++..........++|
T Consensus         1 m~i~~~~~~~f~~~~~~~~~~~~~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~-~~~li~~~~~~~~~~~~v   79 (251)
T cd03273           1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASN-LQDLIYKRGQAGITKASV   79 (251)
T ss_pred             CEeeEEEEeCccccCcCEeeccCCCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccC-HHHHhhcCCCCCCcEEEE
Confidence            89999999999999988755578899999999999999999999999998753 4554322 223444333223446799


Q ss_pred             EEEEecCCC
Q psy16868         80 EIVFDNTDH   88 (109)
Q Consensus        80 ~~~fq~~~~   88 (109)
                      +++||+++.
T Consensus        80 ~~~fq~~~~   88 (251)
T cd03273          80 TIVFDNSDK   88 (251)
T ss_pred             EEEEEcCCc
Confidence            999999643

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.80  E-value=1.3e-19  Score=120.92  Aligned_cols=88  Identities=76%  Similarity=1.207  Sum_probs=66.9

Q ss_pred             eeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEE
Q psy16868          3 IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIV   82 (109)
Q Consensus         3 i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   82 (109)
                      |++|+++||++|.+..++.++++++++|+||||||||||++||++++....+..+ .+...+++..+.......+.|+++
T Consensus         1 i~~i~~~nfksy~~~~~~~~~~~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~-~~~~~~li~~~~~~~~~~~~v~i~   79 (243)
T cd03272           1 IKQVIIQGFKSYKDQTVIEPFSPKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLR-EEQRQALLHEGSGPSVMSAYVEII   79 (243)
T ss_pred             CcEEEEeCccCcccCcccccCCCCcEEEECCCCCCHHHHHHHHHHHHcCchhhhh-hhhHHHhEeCCCCCCCceEEEEEE
Confidence            4689999999999888787899999999999999999999999999875555433 221234455544433456889999


Q ss_pred             EecCCCCCc
Q psy16868         83 FDNTDHRVP   91 (109)
Q Consensus        83 fq~~~~~~~   91 (109)
                      |++++.+++
T Consensus        80 ~~~~~~~~~   88 (243)
T cd03272          80 FDNSDNRFP   88 (243)
T ss_pred             EEcCCCccC
Confidence            998766544

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.77  E-value=4.1e-19  Score=118.97  Aligned_cols=86  Identities=14%  Similarity=0.209  Sum_probs=68.0

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      .++++|+ .+|....++++++     |++++|+|||||||||||++|++++.|..|.+.+++..    ..........+.
T Consensus         2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~----i~~~~~kelAk~   77 (258)
T COG1120           2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKD----IASLSPKELAKK   77 (258)
T ss_pred             eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCc----hhhcCHHHHhhh
Confidence            3788898 7898887787776     89999999999999999999999999999999865532    122333445678


Q ss_pred             EEEEEecCCCCCceeE
Q psy16868         79 VEIVFDNTDHRVPGFI   94 (109)
Q Consensus        79 i~~~fq~~~~~~~~~~   94 (109)
                      +++++|.+...++..+
T Consensus        78 ia~vpQ~~~~~~~~tV   93 (258)
T COG1120          78 LAYVPQSPSAPFGLTV   93 (258)
T ss_pred             EEEeccCCCCCCCcEE
Confidence            9999999866655544

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.77  E-value=1.3e-19  Score=117.91  Aligned_cols=80  Identities=20%  Similarity=0.309  Sum_probs=65.3

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|+ +.|++.+++++++     |++++|+||+||||||||++|+++..+++|.+.+++....   ........++++
T Consensus         3 i~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~---~~~~~~~~R~~v   79 (240)
T COG1126           3 IEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVG---DKKDILKLRRKV   79 (240)
T ss_pred             EEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEecc---chhhHHHHHHhc
Confidence            789999 8999999888887     8999999999999999999999999999999986653111   111334457889


Q ss_pred             EEEEecCCC
Q psy16868         80 EIVFDNTDH   88 (109)
Q Consensus        80 ~~~fq~~~~   88 (109)
                      +||||+.+-
T Consensus        80 GmVFQ~fnL   88 (240)
T COG1126          80 GMVFQQFNL   88 (240)
T ss_pred             Ceecccccc
Confidence            999998743

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.75  E-value=1.1e-18  Score=120.84  Aligned_cols=76  Identities=18%  Similarity=0.248  Sum_probs=61.7

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      .|+++|+ +.|++..++++++     |++++|+|||||||||||++|+|+..+++|.+.+++..   + .+  .++.++.
T Consensus         3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~---v-t~--l~P~~R~   76 (338)
T COG3839           3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRD---V-TD--LPPEKRG   76 (338)
T ss_pred             EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE---C-CC--CChhHCC
Confidence            5899999 8898863466665     89999999999999999999999999999999866531   1 22  2334788


Q ss_pred             EEEEEecC
Q psy16868         79 VEIVFDNT   86 (109)
Q Consensus        79 i~~~fq~~   86 (109)
                      |+||||+.
T Consensus        77 iamVFQ~y   84 (338)
T COG3839          77 IAMVFQNY   84 (338)
T ss_pred             EEEEeCCc
Confidence            99999985

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.75  E-value=8.9e-18  Score=131.59  Aligned_cols=88  Identities=41%  Similarity=0.701  Sum_probs=72.1

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCc-ccccccchhhhhhhcCCCC--ceeeE
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDES-TSLRHSDSRQALLHEGTGP--RVVNA   77 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~   77 (109)
                      |+|++|.+.||++|.+...+ +|++++++|+||||||||++++||+|++...+ ..++ .+...++++.+...  +...+
T Consensus         1 m~lk~i~l~gFKSF~~~~~i-~f~~~~t~IvGPNGSGKSNI~DAi~fVLG~~s~k~lR-a~~~~DlIf~g~~~r~~~~~A   78 (1163)
T COG1196           1 MYLKRIELKGFKSFADPTEI-NFSPGFTAIVGPNGSGKSNIVDAIRFVLGEQSAKNLR-ASKMSDLIFAGSGNRKPANYA   78 (1163)
T ss_pred             CeeeEEEEECcccCCCCeee-ecCCCCeEEECCCCCchHHHHHHHHHHhCcchhhhhh-ccCCcceeeCCCCCCCCCCce
Confidence            89999999999999996645 99999999999999999999999999998663 3444 55567788777653  23358


Q ss_pred             EEEEEEecCCCCC
Q psy16868         78 YVEIVFDNTDHRV   90 (109)
Q Consensus        78 ~i~~~fq~~~~~~   90 (109)
                      .|.++|.+.+...
T Consensus        79 ~V~l~fdN~d~~~   91 (1163)
T COG1196          79 EVELTFDNSDNTL   91 (1163)
T ss_pred             EEEEEEeCCCCcC
Confidence            9999999988543

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.74  E-value=1.1e-18  Score=115.12  Aligned_cols=97  Identities=13%  Similarity=0.107  Sum_probs=75.2

Q ss_pred             EEEEece-eecCCCe----eEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCce
Q psy16868          5 QVIIHGF-KSYKEQT----VVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRV   74 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~----~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   74 (109)
                      .++++|+ +.|+...    ++++++     |+..+|+|++|||||||.++|+|+..|+.|.+.+.+...   ......+.
T Consensus         3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~---~~~~~~~~   79 (252)
T COG1124           3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPL---APKKRAKA   79 (252)
T ss_pred             eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCccc---Cccccchh
Confidence            3788888 7787766    666665     899999999999999999999999999999998665311   11111223


Q ss_pred             eeEEEEEEEecCCCCCceeEEEeecceeee
Q psy16868         75 VNAYVEIVFDNTDHRVPGFIRCRSTSVDLY  104 (109)
Q Consensus        75 ~~~~i~~~fq~~~~~~~~~~~~~~~~~~~~  104 (109)
                      ..+.|.||||+|...+.+++..++...+..
T Consensus        80 ~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl  109 (252)
T COG1124          80 FYRPVQMVFQDPYSSLNPRRTVGRILSEPL  109 (252)
T ss_pred             hccceeEEecCCccccCcchhHHHHHhhhh
Confidence            467899999999999988887776665544

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.74  E-value=2.1e-18  Score=115.19  Aligned_cols=83  Identities=22%  Similarity=0.296  Sum_probs=63.1

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      .|+++|+ ..|....++++++     |++++|+||||||||||+++|.|++.|..|.+.+.+.       ..........
T Consensus         4 ~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~-------~~~~~~~~~~   76 (254)
T COG1121           4 MIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGK-------PVRKRRKRLR   76 (254)
T ss_pred             EEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccc-------cccccccCCe
Confidence            5889999 7888545777776     8899999999999999999999999999999873332       1111111468


Q ss_pred             EEEEEecC--CCCCceeE
Q psy16868         79 VEIVFDNT--DHRVPGFI   94 (109)
Q Consensus        79 i~~~fq~~--~~~~~~~~   94 (109)
                      |+||+|..  +..+|.++
T Consensus        77 IgYVPQ~~~~d~~fP~tV   94 (254)
T COG1121          77 IGYVPQKSSVDRSFPITV   94 (254)
T ss_pred             EEEcCcccccCCCCCcCH
Confidence            99999965  55566544

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.74  E-value=3e-17  Score=110.09  Aligned_cols=87  Identities=37%  Similarity=0.575  Sum_probs=62.4

Q ss_pred             eeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCC--CceeeEEEE
Q psy16868          3 IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTG--PRVVNAYVE   80 (109)
Q Consensus         3 i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~   80 (109)
                      |++|++.||++|.+...+ ++...+++|+||||||||||++||++++.+..+.++ .....+++..+..  .....+.|.
T Consensus         1 i~~i~l~nf~~~~~~~~~-~~~~~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r-~~~~~~~i~~~~~~~~~~~~~~v~   78 (247)
T cd03275           1 LKRLELENFKSYKGRHVI-GPFDRFTCIIGPNGSGKSNLMDAISFVLGEKSSHLR-SKNLKDLIYRARVGKPDSNSAYVT   78 (247)
T ss_pred             CcEEEEECccccCCCeee-cCCCCeEEEECCCCCCHHHHHHHHHHHhCCCccccc-ccchhhhcccCccccCCCceEEEE
Confidence            468999999999876556 555679999999999999999999999987666655 2222334433321  123367888


Q ss_pred             EEEecCCCCCc
Q psy16868         81 IVFDNTDHRVP   91 (109)
Q Consensus        81 ~~fq~~~~~~~   91 (109)
                      ++|+..+..+.
T Consensus        79 ~~f~~~~~~~~   89 (247)
T cd03275          79 AVYEDDDGEEK   89 (247)
T ss_pred             EEEEcCCCcEE
Confidence            88987655543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.73  E-value=4.1e-18  Score=118.50  Aligned_cols=77  Identities=17%  Similarity=0.210  Sum_probs=64.2

Q ss_pred             eEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          4 KQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         4 ~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      ..++++|+ +.|++..++++++     |++++|+|||||||||+|++|+|+..|++|.|.+++...    .+  .++.++
T Consensus         4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i----~~--lpp~kR   77 (352)
T COG3842           4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDI----TD--VPPEKR   77 (352)
T ss_pred             ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC----CC--CChhhc
Confidence            46899999 8999887787776     899999999999999999999999999999998666421    22  334478


Q ss_pred             EEEEEEecC
Q psy16868         78 YVEIVFDNT   86 (109)
Q Consensus        78 ~i~~~fq~~   86 (109)
                      .|++|||+-
T Consensus        78 ~ig~VFQ~Y   86 (352)
T COG3842          78 PIGMVFQSY   86 (352)
T ss_pred             ccceeecCc
Confidence            899999984

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.73  E-value=1.9e-17  Score=107.76  Aligned_cols=87  Identities=34%  Similarity=0.582  Sum_probs=59.8

Q ss_pred             eeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCC--CceeeEEEE
Q psy16868          3 IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTG--PRVVNAYVE   80 (109)
Q Consensus         3 i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~   80 (109)
                      |+++++.||++|++...+ ++.+++++|+||||||||||+++|++++.+..+.........+++..+..  .....+.|+
T Consensus         1 ~~~~~~~~fr~~~~~~~l-~~~~g~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   79 (197)
T cd03278           1 LKKLELKGFKSFADKTTI-PFPPGLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVT   79 (197)
T ss_pred             CcEEEEeCCcCcCCCeee-ecCCCcEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEE
Confidence            468999999999444335 56655999999999999999999999997653321111112233333322  122357899


Q ss_pred             EEEecCCCCC
Q psy16868         81 IVFDNTDHRV   90 (109)
Q Consensus        81 ~~fq~~~~~~   90 (109)
                      ++||++..++
T Consensus        80 ~vfq~~~~~~   89 (197)
T cd03278          80 LTFDNSDGRY   89 (197)
T ss_pred             EEEEcCCCce
Confidence            9999998774

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.71  E-value=1.2e-16  Score=105.20  Aligned_cols=87  Identities=38%  Similarity=0.622  Sum_probs=58.6

Q ss_pred             eeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcc-cccccchhhhhhhc-CCCCceeeEEE
Q psy16868          2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDEST-SLRHSDSRQALLHE-GTGPRVVNAYV   79 (109)
Q Consensus         2 ~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~i   79 (109)
                      +|.+|++.||++|.+.....++++++++|+||||+||||+++||.+++....+ .++ .....+++.. ........+.|
T Consensus         1 ~I~~l~i~nFr~~~~~~~~~~~~~~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r-~~~~~~lI~~~~~~~~~~~a~V   79 (220)
T PF02463_consen    1 MIKSLEIENFRNFKGKNAELSFSPGLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFR-GSKLKDLINKSGSDQDSKSAEV   79 (220)
T ss_dssp             EEEEEEEESBTTC-SCEEEEETTSSEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT--SSGGTCB--BTTB---SEEEE
T ss_pred             CccEEEEcCceEEecCeEEEecCCCCEEEEcCCCCCHHHHHHHHHHHHHHccccccc-cccccccccccccccccccccc
Confidence            58899999999996333233888899999999999999999999998874332 222 2223334444 33334457889


Q ss_pred             EEEEecCCCC
Q psy16868         80 EIVFDNTDHR   89 (109)
Q Consensus        80 ~~~fq~~~~~   89 (109)
                      ...|+..+..
T Consensus        80 ~~~~~~~~~~   89 (220)
T PF02463_consen   80 ELIFDNSDEE   89 (220)
T ss_dssp             EEEEECTTEE
T ss_pred             cccccccccc
Confidence            9999877654

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.71  E-value=4.3e-17  Score=107.17  Aligned_cols=86  Identities=20%  Similarity=0.315  Sum_probs=60.9

Q ss_pred             CeeeEEEEeceeecCCCeeEecCC----CCceEEEecCCCCcchHHHHHHHhhccCc-ccccccchhhhhhhcCCCCcee
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFD----KRHNVVVGRNGSGKSNFFFAIQFVLSDES-TSLRHSDSRQALLHEGTGPRVV   75 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~----~~~~~i~G~NG~GKStll~al~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~   75 (109)
                      |++.+|+++||++|.+...+ +|+    +++++|+||||||||||+++|++++++.. +... .....+.+..    ...
T Consensus         1 m~~~~i~l~nf~~y~~~~~i-~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~-~~~~~~~~~~----~~~   74 (213)
T cd03279           1 MKPLKLELKNFGPFREEQVI-DFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGR-QENLRSVFAP----GED   74 (213)
T ss_pred             CEEEEEEEECCcCcCCceEE-eCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCcccccc-chhHHHHhcC----CCc
Confidence            89999999999998776656 565    45999999999999999999998876333 2222 1111122222    234


Q ss_pred             eEEEEEEEecCCCCCce
Q psy16868         76 NAYVEIVFDNTDHRVPG   92 (109)
Q Consensus        76 ~~~i~~~fq~~~~~~~~   92 (109)
                      ...|+++||+++..+..
T Consensus        75 ~~~v~~~f~~~~~~~~~   91 (213)
T cd03279          75 TAEVSFTFQLGGKKYRV   91 (213)
T ss_pred             cEEEEEEEEECCeEEEE
Confidence            78899999998665543

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.70  E-value=9.8e-18  Score=110.38  Aligned_cols=84  Identities=14%  Similarity=0.287  Sum_probs=64.7

Q ss_pred             EEEEece-eec-CCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          5 QVIIHGF-KSY-KEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         5 ~i~i~n~-~~~-~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      .|+++|+ +.| ...+++++++     |++++|+|++||||||||++|.++..++.|.+.+.+. ...-..+...+..++
T Consensus         3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~-~i~~~~~k~lr~~r~   81 (258)
T COG3638           3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGV-QITKLKGKELRKLRR   81 (258)
T ss_pred             eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEeccc-chhccchHHHHHHHH
Confidence            3789999 889 6666677665     8999999999999999999999999999999885552 111222333445578


Q ss_pred             EEEEEEecCCCC
Q psy16868         78 YVEIVFDNTDHR   89 (109)
Q Consensus        78 ~i~~~fq~~~~~   89 (109)
                      .|+|+||+++--
T Consensus        82 ~iGmIfQ~~nLv   93 (258)
T COG3638          82 DIGMIFQQFNLV   93 (258)
T ss_pred             hceeEeccCCcc
Confidence            899999997543

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.69  E-value=1.6e-17  Score=112.94  Aligned_cols=79  Identities=18%  Similarity=0.284  Sum_probs=59.7

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|. +.|....++++++     |++++|.|||||||||||++|+|++.|+.|.|.++++   ...+-.......++|
T Consensus         3 i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~---~l~D~~~~~~~~R~V   79 (345)
T COG1118           3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGR---VLFDVSNLAVRDRKV   79 (345)
T ss_pred             eeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCE---eccchhccchhhcce
Confidence            566666 5566555454443     8999999999999999999999999999999986664   222222334557899


Q ss_pred             EEEEecCC
Q psy16868         80 EIVFDNTD   87 (109)
Q Consensus        80 ~~~fq~~~   87 (109)
                      +++||+..
T Consensus        80 GfvFQ~YA   87 (345)
T COG1118          80 GFVFQHYA   87 (345)
T ss_pred             eEEEechh
Confidence            99999964

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.69  E-value=3.2e-17  Score=108.73  Aligned_cols=74  Identities=20%  Similarity=0.255  Sum_probs=59.2

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      .+.+++. +.|....++.+++     |++++|+||+||||||||++|+|+..|+.|.+...+.   -+      ......
T Consensus         3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~---~v------~~p~~~   73 (248)
T COG1116           3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGR---PV------TGPGPD   73 (248)
T ss_pred             eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCc---cc------CCCCCC
Confidence            4778888 7888877777776     8999999999999999999999999999999774432   11      112567


Q ss_pred             EEEEEecCC
Q psy16868         79 VEIVFDNTD   87 (109)
Q Consensus        79 i~~~fq~~~   87 (109)
                      ++++||++.
T Consensus        74 ~~~vFQ~~~   82 (248)
T COG1116          74 IGYVFQEDA   82 (248)
T ss_pred             EEEEeccCc
Confidence            899999863

>KOG0964|consensus

Probab=99.67  E-value=1.3e-16  Score=120.14  Aligned_cols=90  Identities=68%  Similarity=1.132  Sum_probs=82.3

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      |+|..+.|++|++|++..++.+|++..++|||.||||||+++.||.++|.....++. ..+..++++.+..+....+.|+
T Consensus         1 MyIk~ViI~GFrSYrd~tvv~~fSph~NvIVGrNGSGKSNFF~AIrFVLSDey~hLk-~E~R~gLlHEGsG~~V~sA~VE   79 (1200)
T KOG0964|consen    1 MYIKQVIIKGFRSYRDETVVDPFSPHHNVIVGRNGSGKSNFFHAIRFVLSDEYSHLK-REERQGLLHEGSGAMVMSASVE   79 (1200)
T ss_pred             CceEEeeeccchhhccccccCCCCCCcceEecCCCCCchhhHHHhhhhcccchhhcC-HHHHhhhhhcCCCcceEEEEEE
Confidence            899999999999999999888899999999999999999999999999988777776 5567778888988888899999


Q ss_pred             EEEecCCCCCc
Q psy16868         81 IVFDNTDHRVP   91 (109)
Q Consensus        81 ~~fq~~~~~~~   91 (109)
                      ++|.+++..+|
T Consensus        80 IvF~nsdnr~~   90 (1200)
T KOG0964|consen   80 IVFDNSDNRLP   90 (1200)
T ss_pred             EEEeCcccccC
Confidence            99999988887

>PRK00064 recF recombination protein F; Reviewed

Probab=99.67  E-value=5.1e-16  Score=109.14  Aligned_cols=86  Identities=24%  Similarity=0.427  Sum_probs=64.2

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      |+|++|++.||++|.+.. + ++++++++|+||||+|||||++||+.+..+.+...   ....+++..+..    ...|.
T Consensus         1 M~i~~l~i~nfr~~~~~~-l-~~~~~~~~i~G~NgsGKT~lleai~~l~~~~s~r~---~~~~~li~~g~~----~~~v~   71 (361)
T PRK00064          1 MYLTRLSLTDFRNYEELD-L-ELSPGVNVLVGENGQGKTNLLEAIYLLAPGRSHRT---ARDKELIRFGAE----AAVIH   71 (361)
T ss_pred             CEEEEEEEeCCCcccceE-E-EecCCeEEEECCCCCCHHHHHHHHHHhCCCCCccC---CChhHHHhcCCC----cEEEE
Confidence            899999999999998766 5 77889999999999999999999999876543331   123445665554    56788


Q ss_pred             EEEecCCCCCceeEE
Q psy16868         81 IVFDNTDHRVPGFIR   95 (109)
Q Consensus        81 ~~fq~~~~~~~~~~~   95 (109)
                      ..|...+....+.+.
T Consensus        72 ~~~~~~~~~~~i~~~   86 (361)
T PRK00064         72 GRVEKGGRELPLGLE   86 (361)
T ss_pred             EEEEeCCcEEEEEEE
Confidence            888655444444444

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.66  E-value=4e-17  Score=106.35  Aligned_cols=83  Identities=12%  Similarity=0.247  Sum_probs=61.4

Q ss_pred             eeEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCc-----ccccccchhhhhhhcCCC
Q psy16868          3 IKQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDES-----TSLRHSDSRQALLHEGTG   71 (109)
Q Consensus         3 i~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~-----~~~~~~~~~~~~~~~~~~   71 (109)
                      ...++++|+ ..|++.+++++++     +.+++|+||+||||||+|+++..+...-.     |.+.+.+.  ++.....+
T Consensus         5 ~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~--ni~~~~~d   82 (253)
T COG1117           5 IPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGK--NIYDPKVD   82 (253)
T ss_pred             cceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCe--eccCCCCC
Confidence            346888999 7788888888777     78999999999999999999999877443     55544332  12222233


Q ss_pred             CceeeEEEEEEEecCC
Q psy16868         72 PRVVNAYVEIVFDNTD   87 (109)
Q Consensus        72 ~~~~~~~i~~~fq~~~   87 (109)
                      .-..++.|+||||.|+
T Consensus        83 ~~~lRr~vGMVFQkPn   98 (253)
T COG1117          83 VVELRRRVGMVFQKPN   98 (253)
T ss_pred             HHHHHHHheeeccCCC
Confidence            3455789999999874

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.66  E-value=1.2e-16  Score=106.38  Aligned_cols=83  Identities=18%  Similarity=0.263  Sum_probs=62.1

Q ss_pred             EEEece-eecCCC-eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          6 VIIHGF-KSYKEQ-TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         6 i~i~n~-~~~~~~-~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      +.++++ ..|.+. .++++++     ++.++|+|+||||||||+++|+|++.|+.|.+...+....   ........+++
T Consensus         4 i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~---~~~~~~~~~~~   80 (235)
T COG1122           4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTS---SEKSLLELRQK   80 (235)
T ss_pred             EEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeecc---chhhHHHhhcc
Confidence            667776 567654 5565555     7899999999999999999999999999999864442111   11223345788


Q ss_pred             EEEEEecCCCCCc
Q psy16868         79 VEIVFDNTDHRVP   91 (109)
Q Consensus        79 i~~~fq~~~~~~~   91 (109)
                      |+++||+|+.++.
T Consensus        81 vG~VfQnpd~q~~   93 (235)
T COG1122          81 VGLVFQNPDDQLF   93 (235)
T ss_pred             eEEEEECcccccc
Confidence            9999999998863

>TIGR00618 sbcc exonuclease SbcC

Probab=99.65  E-value=4.6e-16  Score=121.10  Aligned_cols=90  Identities=19%  Similarity=0.237  Sum_probs=63.5

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCC--CceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDK--RHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~--~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      |++.+|+++||++|.+...+ +|+.  ++++|+||||||||||++||++++++........+   .........+.....
T Consensus         1 M~~~~L~l~nf~s~~~~~~i-dF~~~~gl~~I~G~nGaGKSTildAI~~aL~G~~~~~~~~~---~~~~~~~~~~~~~~~   76 (1042)
T TIGR00618         1 MKPLRLTLKNFGSYKGTHTI-DFTALGPIFLICGKTGAGKTTLLDAITYALYGKLPRRSEVI---RSLNSLYAAPSEAAF   76 (1042)
T ss_pred             CeeeEEEEeCeeccCCCcee-eecCCCCeEEEECCCCCCHHHHHHHHHHHhcCCCCCCCccc---cccchhhcCCCCCeE
Confidence            99999999999999887656 7876  89999999999999999999999987544321011   001111111223567


Q ss_pred             EEEEEecCCCCCceeE
Q psy16868         79 VEIVFDNTDHRVPGFI   94 (109)
Q Consensus        79 i~~~fq~~~~~~~~~~   94 (109)
                      |.+.|...+..|.+.+
T Consensus        77 v~l~F~~~g~~y~~~r   92 (1042)
T TIGR00618        77 AELEFSLGTKIYRVHR   92 (1042)
T ss_pred             EEEEEEECCEEEEEEE
Confidence            8888977666665444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.65  E-value=1.1e-15  Score=119.01  Aligned_cols=85  Identities=39%  Similarity=0.626  Sum_probs=61.9

Q ss_pred             eeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCccc-ccccchhhhhhhcCCC--CceeeEE
Q psy16868          2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTS-LRHSDSRQALLHEGTG--PRVVNAY   78 (109)
Q Consensus         2 ~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~   78 (109)
                      +|.+|++.||++|.+...+ +|++++++|+||||||||||++||.+++....+. ++ .....+++..+..  .+...+.
T Consensus         1 ~i~~l~~~nf~s~~~~~~i-~f~~~~~~i~G~NGsGKS~ll~ai~~~lg~~~~~~~r-~~~~~~~i~~g~~~~~~~~~~~   78 (1179)
T TIGR02168         1 RLKKLELAGFKSFADPTTI-NFDKGITGIVGPNGCGKSNIVDAIRWVLGEQSAKALR-GGKMEDVIFNGSETRKPLSLAE   78 (1179)
T ss_pred             CeeEEEEeCccccCCCeeE-EecCCcEEEECCCCCChhHHHHHHHHHHcCCchhhhh-hccchhhhcCCCcccCCCCeeE
Confidence            4789999999999876546 8889999999999999999999999999754322 22 2223345555432  2234678


Q ss_pred             EEEEEecCCC
Q psy16868         79 VEIVFDNTDH   88 (109)
Q Consensus        79 i~~~fq~~~~   88 (109)
                      |.++|++++.
T Consensus        79 v~~~~~~~~~   88 (1179)
T TIGR02168        79 VELVFDNSDG   88 (1179)
T ss_pred             EEEEEecCCC
Confidence            9999987543

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=99.65  E-value=3.7e-16  Score=120.25  Aligned_cols=92  Identities=29%  Similarity=0.421  Sum_probs=69.2

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      |++.+|.+.||++|.+...-..+..++++|+|||||||||||+||++++++...... .....+++..+..    ...|.
T Consensus         1 M~i~~L~L~Nf~S~~~~~~~~~f~~gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~-~~~~~~~i~~g~~----~~~V~   75 (908)
T COG0419           1 MKILRLRLKNFRSFKDIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALYGKTPRLG-AFSLDDLIRAGEK----SASVE   75 (908)
T ss_pred             CCCeeeehcccccccccceeecCCCCeEEEECCCCCcHHHHHHHHHHHHcCCCCCcc-chhhhHHHhcCCc----cEEEE
Confidence            899999999999999766322366899999999999999999999999998766322 1112334444443    47899


Q ss_pred             EEEecCCCCCceeEEEe
Q psy16868         81 IVFDNTDHRVPGFIRCR   97 (109)
Q Consensus        81 ~~fq~~~~~~~~~~~~~   97 (109)
                      +.|+..+..|.+.+...
T Consensus        76 l~F~~~g~~Y~i~R~~~   92 (908)
T COG0419          76 LEFEVNGKKYRIEREFR   92 (908)
T ss_pred             EEEEECCEEEEEEeeec
Confidence            99997777777766543

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.65  E-value=4.9e-17  Score=107.19  Aligned_cols=84  Identities=18%  Similarity=0.205  Sum_probs=58.1

Q ss_pred             EEEece-eecCCC----eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868          6 VIIHGF-KSYKEQ----TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV   75 (109)
Q Consensus         6 i~i~n~-~~~~~~----~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (109)
                      ++++|+ +.|...    .++++++     |++++|+||+||||||||..|.++..|+.|.+.+.+..............+
T Consensus         2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R   81 (226)
T COG1136           2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR   81 (226)
T ss_pred             cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence            346666 545432    3455554     899999999999999999999999999999987665322212111122234


Q ss_pred             eEEEEEEEecCCCC
Q psy16868         76 NAYVEIVFDNTDHR   89 (109)
Q Consensus        76 ~~~i~~~fq~~~~~   89 (109)
                      +..|+++||+.+--
T Consensus        82 ~~~iGfvFQ~~nLl   95 (226)
T COG1136          82 RKKIGFVFQNFNLL   95 (226)
T ss_pred             HHhEEEECccCCCC
Confidence            67799999997543

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.65  E-value=1e-15  Score=100.13  Aligned_cols=84  Identities=26%  Similarity=0.509  Sum_probs=57.3

Q ss_pred             eeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccc-cchhhhhhhcCCCCceeeEEEEE
Q psy16868          3 IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRH-SDSRQALLHEGTGPRVVNAYVEI   81 (109)
Q Consensus         3 i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~   81 (109)
                      +++|+++||++|.+...+ +|+.++++|+||||+|||||++||++++.+....-.. .....+.+..+    ...+.|++
T Consensus         1 ~~~l~l~nfr~~~~~~~l-~~~~g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~----~~~~~v~~   75 (204)
T cd03240           1 IDKLSIRNIRSFHERSEI-EFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREG----EVRAQVKL   75 (204)
T ss_pred             CcEEEEECcccccCceEE-ecCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCC----CCcEEEEE
Confidence            468999999997666546 7887899999999999999999998777543321110 00012223332    23788999


Q ss_pred             EEecC-CCCCc
Q psy16868         82 VFDNT-DHRVP   91 (109)
Q Consensus        82 ~fq~~-~~~~~   91 (109)
                      +||++ ..++.
T Consensus        76 ~f~~~~~~~~~   86 (204)
T cd03240          76 AFENANGKKYT   86 (204)
T ss_pred             EEEeCCCCEEE
Confidence            99998 33343

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.64  E-value=1.7e-15  Score=102.83  Aligned_cols=85  Identities=22%  Similarity=0.399  Sum_probs=62.8

Q ss_pred             eeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEE
Q psy16868          3 IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIV   82 (109)
Q Consensus         3 i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   82 (109)
                      |.+|+++||++|.+.. + +|++++++|+|||||||||+++||..++.+......   ...+++..+..    .+.|...
T Consensus         1 l~~l~i~nfr~~~~~~-~-~~~~~~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~---~~~~~i~~~~~----~~~v~~~   71 (270)
T cd03242           1 LKSLELRNFRNYAELE-L-EFEPGVTVLVGENAQGKTNLLEAISLLATGKSHRTS---RDKELIRWGAE----EAKISAV   71 (270)
T ss_pred             CcEEEEeCCcCcceeE-E-ecCCCeEEEECCCCCCHHHHHHHHHHhccCCCCCCC---CHHHHHhcCCC----CEEEEEE
Confidence            4689999999998765 5 788899999999999999999999999876533211   13345555543    6778888


Q ss_pred             EecCCCCCceeEEE
Q psy16868         83 FDNTDHRVPGFIRC   96 (109)
Q Consensus        83 fq~~~~~~~~~~~~   96 (109)
                      |.......++.+..
T Consensus        72 f~~~~~~~~i~~~~   85 (270)
T cd03242          72 LERQGGELALELTI   85 (270)
T ss_pred             EEeCCCeEEEEEEE
Confidence            87765555555544

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14079 recF recombination protein F; Provisional

Probab=99.64  E-value=2.1e-15  Score=105.60  Aligned_cols=79  Identities=24%  Similarity=0.357  Sum_probs=60.1

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      |+|.+|++.||++|.+.. + +|++++++|+|+||+|||||++||+.++.+...    .....+++..+..    ...|.
T Consensus         1 M~i~~l~l~nfRn~~~~~-l-~f~~g~nvi~G~NGsGKT~lLeAI~~~~~gs~r----~~~~~~lI~~g~~----~~~v~   70 (349)
T PRK14079          1 MRLLSLRQLNYRNLAPPT-L-AFPPGVTAVVGENAAGKTNLLEAIYLALTGELP----NGRLADLVRFGEG----EAWVH   70 (349)
T ss_pred             CEEEEEEEeccCCcccce-E-EeCCCeEEEECCCCCCHHHHHHHHHHHhcCCCC----CCcHHhheecCCC----cEEEE
Confidence            899999999999998876 6 888899999999999999999999988765322    2223445555543    46677


Q ss_pred             EEEecCCCC
Q psy16868         81 IVFDNTDHR   89 (109)
Q Consensus        81 ~~fq~~~~~   89 (109)
                      ..|+..+..
T Consensus        71 ~~~~~~~~~   79 (349)
T PRK14079         71 AEVETGGGL   79 (349)
T ss_pred             EEEEeCCCe
Confidence            777655443

>KOG0018|consensus

Probab=99.64  E-value=2.2e-16  Score=119.66  Aligned_cols=100  Identities=32%  Similarity=0.463  Sum_probs=74.5

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      |.+..|++.||++|...+++-+|+ .+|+||||||||||+||+||++++.-.++.++ .....++++ +.+.   ++.+.
T Consensus         2 g~L~~lEieNFKSYkGh~~iGPF~-~FTaIIGPNGSGKSNlMDAISFVLGekss~LR-~~~lkdLIy-g~~i---~~~v~   75 (1141)
T KOG0018|consen    2 GRLLTLEIENFKSYKGHQVIGPFD-RFTAIIGPNGSGKSNLMDAISFVLGEKSSHLR-VSHLKDLIY-GKPI---RKPVT   75 (1141)
T ss_pred             CceeeeehhccccccCceeecCch-hceeeeCCCCCchHHHHHHHHHHhcCCCcccc-cchHHHHhc-CCcc---CCchh
Confidence            457789999999999999887887 99999999999999999999999998888877 444566676 4332   34455


Q ss_pred             EEEecCCCCCc-eeEEEeecceeeeeee
Q psy16868         81 IVFDNTDHRVP-GFIRCRSTSVDLYRCS  107 (109)
Q Consensus        81 ~~fq~~~~~~~-~~~~~~~~~~~~~~~~  107 (109)
                      ++|+-+++... +.+.+. .....|+++
T Consensus        76 l~Y~~~dg~~~~F~R~I~-~G~seY~ID  102 (1141)
T KOG0018|consen   76 LKYEEGDGETRRFTRAIN-GGTSEYMID  102 (1141)
T ss_pred             heeecCCchhhhhhhhhc-CCceeEEEc
Confidence            88888876543 333233 444445543

>PRK02224 chromosome segregation protein; Provisional

Probab=99.63  E-value=1.2e-15  Score=116.98  Aligned_cols=87  Identities=25%  Similarity=0.378  Sum_probs=67.3

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      |+|..|.+.||++|.+.. + +|++++++|+||||||||||++||.+++++....   .+...+++..+..    ...|.
T Consensus         1 M~i~~l~l~nf~~~~~~~-~-~f~~g~~~i~G~Ng~GKStil~ai~~~l~g~~~~---~~~~~~~~~~~~~----~~~v~   71 (880)
T PRK02224          1 MRFDRVRLENFKCYADAD-L-RLEDGVTVIHGVNGSGKSSLLEACFFALYGSKAL---DDTLDDVITIGAE----EAEIE   71 (880)
T ss_pred             CeEEEEEEECcccccceE-E-ecCCCeEEEECCCCCCHHHHHHHHHHHhCCCccc---cccHHHHHhCCCC----cEEEE
Confidence            999999999999998766 5 7888999999999999999999999999865432   1112334444432    57899


Q ss_pred             EEEecCCCCCceeEEE
Q psy16868         81 IVFDNTDHRVPGFIRC   96 (109)
Q Consensus        81 ~~fq~~~~~~~~~~~~   96 (109)
                      +.|.+.+..+.+.++.
T Consensus        72 ~~f~~~~~~~~i~r~~   87 (880)
T PRK02224         72 LWFEHAGGEYHIERRV   87 (880)
T ss_pred             EEEEECCEEEEEEEEE
Confidence            9998877777666554

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.63  E-value=1.4e-15  Score=97.69  Aligned_cols=82  Identities=41%  Similarity=0.576  Sum_probs=56.9

Q ss_pred             eeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEE
Q psy16868          3 IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIV   82 (109)
Q Consensus         3 i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   82 (109)
                      |+++++.||++|++.. +....+.+++|+||||+||||+++||+.++........... ...+...........++|+++
T Consensus         1 i~~i~l~nf~~~~~~~-~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~   78 (178)
T cd03239           1 IKQITLKNFKSYRDET-VVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGS-LLFLAGGGVKAGINSASVEIT   78 (178)
T ss_pred             CcEEEEECccCCCCCE-EecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcc-hhhhcccccCCCCceEEEEEE
Confidence            4689999999998887 42443349999999999999999999999987655433111 111112222333447889988


Q ss_pred             EecC
Q psy16868         83 FDNT   86 (109)
Q Consensus        83 fq~~   86 (109)
                      |++.
T Consensus        79 f~~~   82 (178)
T cd03239          79 FDKS   82 (178)
T ss_pred             EECc
Confidence            8765

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.63  E-value=3.3e-16  Score=107.98  Aligned_cols=82  Identities=17%  Similarity=0.231  Sum_probs=62.8

Q ss_pred             CeeeEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCce
Q psy16868          1 MYIKQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRV   74 (109)
Q Consensus         1 M~i~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   74 (109)
                      |+...++++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.|+.|.+.+.+..  .. . . ...
T Consensus         3 ~~~~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~--~~-~-~-~~~   77 (306)
T PRK13537          3 MSVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEP--VP-S-R-ARH   77 (306)
T ss_pred             CCCceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEe--cc-c-c-hHH
Confidence            33446889999 8898777777776     88999999999999999999999999999998755421  11 1 1 112


Q ss_pred             eeEEEEEEEecCC
Q psy16868         75 VNAYVEIVFDNTD   87 (109)
Q Consensus        75 ~~~~i~~~fq~~~   87 (109)
                      .++.|++++|++.
T Consensus        78 ~~~~ig~v~q~~~   90 (306)
T PRK13537         78 ARQRVGVVPQFDN   90 (306)
T ss_pred             HHhcEEEEeccCc
Confidence            3567999999864

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.62  E-value=2.1e-16  Score=103.78  Aligned_cols=78  Identities=13%  Similarity=0.164  Sum_probs=61.4

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      ++++|+ ..|+..+++++++     +++++|+|+||+||||||++|+|+.++.+|.+.+.+.+.   ..-.+....+..|
T Consensus         4 L~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~di---t~~p~~~r~r~Gi   80 (237)
T COG0410           4 LEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDI---TGLPPHERARLGI   80 (237)
T ss_pred             eeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeec---CCCCHHHHHhCCe
Confidence            678888 6788888888877     899999999999999999999999999999998665422   1222223346678


Q ss_pred             EEEEecC
Q psy16868         80 EIVFDNT   86 (109)
Q Consensus        80 ~~~fq~~   86 (109)
                      ++|+|..
T Consensus        81 ~~VPegR   87 (237)
T COG0410          81 AYVPEGR   87 (237)
T ss_pred             EeCcccc
Confidence            8888764

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.62  E-value=5.1e-16  Score=108.40  Aligned_cols=79  Identities=22%  Similarity=0.256  Sum_probs=61.6

Q ss_pred             eEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          4 KQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         4 ~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      ..|+++|+ +.|++..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...   . .. ....+.
T Consensus        40 ~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~---~-~~-~~~~~~  114 (340)
T PRK13536         40 VAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPV---P-AR-ARLARA  114 (340)
T ss_pred             eeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEEC---C-cc-hHHHhc
Confidence            35889999 8898777777766     899999999999999999999999999999988655311   1 11 112356


Q ss_pred             EEEEEEecCC
Q psy16868         78 YVEIVFDNTD   87 (109)
Q Consensus        78 ~i~~~fq~~~   87 (109)
                      .|+++||++.
T Consensus       115 ~ig~v~q~~~  124 (340)
T PRK13536        115 RIGVVPQFDN  124 (340)
T ss_pred             cEEEEeCCcc
Confidence            7999999854

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.62  E-value=2.7e-16  Score=107.87  Aligned_cols=79  Identities=16%  Similarity=0.225  Sum_probs=62.5

Q ss_pred             eEEEEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          4 KQVIIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         4 ~~i~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      ..+++.|+ +.|+ +..++.+++     |++++|+||||||||||+++|+|++.|++|.+.+.+..    .... ....+
T Consensus         3 ~~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~----~~~~-~~~~~   77 (293)
T COG1131           3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYD----VVKE-PAKVR   77 (293)
T ss_pred             ceeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEe----CccC-HHHHH
Confidence            46888999 8899 577788777     78999999999999999999999999999998855421    1111 22335


Q ss_pred             EEEEEEEecCC
Q psy16868         77 AYVEIVFDNTD   87 (109)
Q Consensus        77 ~~i~~~fq~~~   87 (109)
                      ..|++++|++.
T Consensus        78 ~~igy~~~~~~   88 (293)
T COG1131          78 RRIGYVPQEPS   88 (293)
T ss_pred             hheEEEccCCC
Confidence            67999999875

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.62  E-value=2.2e-15  Score=99.09  Aligned_cols=51  Identities=39%  Similarity=0.712  Sum_probs=46.0

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      |.|++|+++||++|+...++++++-++++|+|||||||||++++|..++..
T Consensus         1 ~~~~~l~l~nfk~~~~~~~l~~~~~~i~~ivGpNGaGKSTll~~i~~~~G~   51 (212)
T cd03274           1 LIITKLVLENFKSYAGEQVIGPFHKSFSAIVGPNGSGKSNVIDSMLFVFGF   51 (212)
T ss_pred             CeEEEEEEECcccCCCCeeeccCCCCeEEEECCCCCCHHHHHHHHHHHhcc
Confidence            889999999999999888777777789999999999999999999977553

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.62  E-value=2.1e-16  Score=103.92  Aligned_cols=81  Identities=19%  Similarity=0.235  Sum_probs=54.7

Q ss_pred             EEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          7 IIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         7 ~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      +++|+ +.|.+    ..++++++     |++++|+||||||||||+++|+|++.+..|.+.+.+...............+
T Consensus         2 ~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   81 (218)
T cd03255           2 ELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRR   81 (218)
T ss_pred             eEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHh
Confidence            56677 56754    44566665     8899999999999999999999999999999875542110000000000123


Q ss_pred             EEEEEEEecCC
Q psy16868         77 AYVEIVFDNTD   87 (109)
Q Consensus        77 ~~i~~~fq~~~   87 (109)
                      ..+++++|++.
T Consensus        82 ~~i~~~~q~~~   92 (218)
T cd03255          82 RHIGFVFQSFN   92 (218)
T ss_pred             hcEEEEeeccc
Confidence            56999999853

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK01156 chromosome segregation protein; Provisional

Probab=99.62  E-value=2.1e-15  Score=115.89  Aligned_cols=86  Identities=28%  Similarity=0.447  Sum_probs=66.6

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      |.|.+|++.||++|.+.. + +|++++++|+|+||||||||++||.+++++....    ....+++..+..    .+.|.
T Consensus         1 M~i~~l~l~NF~s~~~~~-i-~f~~gi~~I~G~NGsGKSsileAI~~aL~g~~~~----~~~~~~i~~~~~----~~~V~   70 (895)
T PRK01156          1 MIIKRIRLKNFLSHDDSE-I-EFDTGINIITGKNGAGKSSIVDAIRFALFTDKRT----EKIEDMIKKGKN----NLEVE   70 (895)
T ss_pred             CeEEEEEEeCccCCCCce-E-ecCCCeEEEECCCCCCHHHHHHHHHHHHcCCccc----ccHHHHhhCCCC----eEEEE
Confidence            899999999999998765 6 8899999999999999999999999988754321    112334444432    68899


Q ss_pred             EEEecCCCCCceeEEE
Q psy16868         81 IVFDNTDHRVPGFIRC   96 (109)
Q Consensus        81 ~~fq~~~~~~~~~~~~   96 (109)
                      +.|...+..+.+.+..
T Consensus        71 l~f~~~g~~y~i~R~~   86 (895)
T PRK01156         71 LEFRIGGHVYQIRRSI   86 (895)
T ss_pred             EEEEECCEEEEEEEEE
Confidence            9998766666666554

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.62  E-value=4.1e-16  Score=106.74  Aligned_cols=85  Identities=16%  Similarity=0.268  Sum_probs=59.6

Q ss_pred             EEEEece-eecCC-----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCc
Q psy16868          5 QVIIHGF-KSYKE-----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~-----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~   73 (109)
                      .++++|+ +.|..     ..++++++     |++++|+|+||||||||+++|+|++.|..|.+.+.+.............
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (290)
T PRK13634          2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK   81 (290)
T ss_pred             EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            3778888 67753     23566665     8999999999999999999999999999999886553111000011112


Q ss_pred             eeeEEEEEEEecCCCC
Q psy16868         74 VVNAYVEIVFDNTDHR   89 (109)
Q Consensus        74 ~~~~~i~~~fq~~~~~   89 (109)
                      ..+..|+++||++...
T Consensus        82 ~~~~~ig~v~q~~~~~   97 (290)
T PRK13634         82 PLRKKVGIVFQFPEHQ   97 (290)
T ss_pred             HHHhhEEEEeeCchhh
Confidence            2345799999987533

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.61  E-value=3.1e-15  Score=97.51  Aligned_cols=79  Identities=25%  Similarity=0.486  Sum_probs=57.1

Q ss_pred             eeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEE
Q psy16868          3 IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIV   82 (109)
Q Consensus         3 i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   82 (109)
                      |.+|++.||++|++.. + +|+.++++|+||||+|||||+++|..++.+............+++..+..    ...|.++
T Consensus         1 i~~l~l~nfr~~~~~~-l-~f~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~----~~~i~~~   74 (198)
T cd03276           1 IESITLKNFMCHRHLQ-I-EFGPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGES----SAKITVT   74 (198)
T ss_pred             CeEEEEeCccceeeeE-E-ecCCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCC----eEEEEEE
Confidence            4689999999997665 5 78888999999999999999999998887654321111112334443332    5778999


Q ss_pred             EecCC
Q psy16868         83 FDNTD   87 (109)
Q Consensus        83 fq~~~   87 (109)
                      |++..
T Consensus        75 ~~~~~   79 (198)
T cd03276          75 LKNQG   79 (198)
T ss_pred             EEcCC
Confidence            98753

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.61  E-value=8.9e-16  Score=107.76  Aligned_cols=76  Identities=21%  Similarity=0.283  Sum_probs=59.0

Q ss_pred             EEEEece-eec-CCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          5 QVIIHGF-KSY-KEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         5 ~i~i~n~-~~~-~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      .|+++|+ +.| .+..++++++     |++++|+|||||||||||++|+|+..|..|.+.+++...    ...  ++.++
T Consensus         3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i----~~~--~~~~r   76 (356)
T PRK11650          3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVV----NEL--EPADR   76 (356)
T ss_pred             EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEEC----CCC--CHHHC
Confidence            4788898 778 5656666665     889999999999999999999999999999988655311    111  12246


Q ss_pred             EEEEEEecC
Q psy16868         78 YVEIVFDNT   86 (109)
Q Consensus        78 ~i~~~fq~~   86 (109)
                      .|+++||++
T Consensus        77 ~ig~v~Q~~   85 (356)
T PRK11650         77 DIAMVFQNY   85 (356)
T ss_pred             CEEEEeCCc
Confidence            799999986

>PRK03918 chromosome segregation protein; Provisional

Probab=99.60  E-value=3.7e-15  Score=114.24  Aligned_cols=90  Identities=27%  Similarity=0.352  Sum_probs=65.3

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      |+|.+|.+.||++|.+.. + +|++++++|+|+||+||||+++||.+++++..+.........+++..+..    .+.|.
T Consensus         1 m~i~~l~i~nf~~~~~~~-i-~f~~g~~~i~G~nG~GKStil~ai~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~v~   74 (880)
T PRK03918          1 MKIEELKIKNFRSHKSSV-V-EFDDGINLIIGQNGSGKSSILEAILVGLYWGHGSKPKGLKKDDFTRIGGS----GTEIE   74 (880)
T ss_pred             CeeEEEEEeCccCccCce-E-ecCCCcEEEEcCCCCCHHHHHHHHHHHhcCCCCCCccccChhhcccCCCC----CEEEE
Confidence            899999999999998765 6 78889999999999999999999999998543321101111233433332    67889


Q ss_pred             EEEecCCCCCceeEEE
Q psy16868         81 IVFDNTDHRVPGFIRC   96 (109)
Q Consensus        81 ~~fq~~~~~~~~~~~~   96 (109)
                      +.|...+..+.+.+..
T Consensus        75 ~~f~~~~~~~~i~R~~   90 (880)
T PRK03918         75 LKFEKNGRKYRIVRSF   90 (880)
T ss_pred             EEEEECCeEEEEEEEE
Confidence            9998766666655544

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.60  E-value=1.7e-15  Score=100.98  Aligned_cols=76  Identities=16%  Similarity=0.254  Sum_probs=57.6

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      ++++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...   . ...  ..+..+
T Consensus         3 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~---~-~~~--~~~~~i   76 (239)
T cd03296           3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDA---T-DVP--VQERNV   76 (239)
T ss_pred             EEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC---C-cCC--ccccce
Confidence            678888 6787666676665     899999999999999999999999999999987554311   1 111  113569


Q ss_pred             EEEEecCC
Q psy16868         80 EIVFDNTD   87 (109)
Q Consensus        80 ~~~fq~~~   87 (109)
                      ++++|++.
T Consensus        77 ~~v~q~~~   84 (239)
T cd03296          77 GFVFQHYA   84 (239)
T ss_pred             EEEecCCc
Confidence            99999863

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.60  E-value=5.2e-16  Score=106.03  Aligned_cols=83  Identities=18%  Similarity=0.302  Sum_probs=58.4

Q ss_pred             EEEece-eecCC-----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCce
Q psy16868          6 VIIHGF-KSYKE-----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRV   74 (109)
Q Consensus         6 i~i~n~-~~~~~-----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   74 (109)
                      ++++|+ +.|..     ..++++++     |++++|+|+||||||||+++|+|++.+..|.+.+.+..............
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (286)
T PRK13646          3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP   82 (286)
T ss_pred             EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence            678888 67753     23566665     88999999999999999999999999999998855431100000111122


Q ss_pred             eeEEEEEEEecCCC
Q psy16868         75 VNAYVEIVFDNTDH   88 (109)
Q Consensus        75 ~~~~i~~~fq~~~~   88 (109)
                      .+..|+++||++..
T Consensus        83 ~~~~ig~v~q~~~~   96 (286)
T PRK13646         83 VRKRIGMVFQFPES   96 (286)
T ss_pred             HHhheEEEecChHh
Confidence            35679999998743

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.60  E-value=9.1e-16  Score=107.60  Aligned_cols=76  Identities=14%  Similarity=0.210  Sum_probs=59.5

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      .|+++|+ +.|.+..++++++     +++++|+|||||||||||++|+|+..|..|.+.+.+..   + ..  .++.++.
T Consensus         4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~---~-~~--~~~~~r~   77 (353)
T TIGR03265         4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRD---I-TR--LPPQKRD   77 (353)
T ss_pred             EEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEE---C-CC--CCHHHCC
Confidence            4888998 7887766666554     89999999999999999999999999999998865531   1 11  1123567


Q ss_pred             EEEEEecC
Q psy16868         79 VEIVFDNT   86 (109)
Q Consensus        79 i~~~fq~~   86 (109)
                      |+++||++
T Consensus        78 ig~v~Q~~   85 (353)
T TIGR03265        78 YGIVFQSY   85 (353)
T ss_pred             EEEEeCCc
Confidence            99999985

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=99.60  E-value=1.3e-15  Score=81.56  Aligned_cols=49  Identities=33%  Similarity=0.548  Sum_probs=42.3

Q ss_pred             eeEEEEeceeecCCCeeEecCC--CCceEEEecCCCCcchHHHHHHHhhccCc
Q psy16868          3 IKQVIIHGFKSYKEQTVVEPFD--KRHNVVVGRNGSGKSNFFFAIQFVLSDES   53 (109)
Q Consensus         3 i~~i~i~n~~~~~~~~~l~~~~--~~~~~i~G~NG~GKStll~al~~~l~~~~   53 (109)
                      ++++++.||..|.... + +++  +..++|+|+||+|||||++||..++.+..
T Consensus         1 L~rl~L~Nw~~f~~~~-~-~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~   51 (62)
T PF13555_consen    1 LTRLQLVNWGSFDGET-I-DFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT   51 (62)
T ss_pred             CcEEEEeccCccCCeE-E-eecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence            4689999999998844 5 666  46899999999999999999999999876

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.60  E-value=1.1e-15  Score=102.09  Aligned_cols=78  Identities=14%  Similarity=0.186  Sum_probs=58.2

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      .++++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...   . .......+..
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i---~-~~~~~~~~~~   78 (241)
T PRK14250          3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDI---K-TIDVIDLRRK   78 (241)
T ss_pred             eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEh---h-hcChHHhhhc
Confidence            4788888 6776655666665     899999999999999999999999999999988554311   1 1111122457


Q ss_pred             EEEEEecC
Q psy16868         79 VEIVFDNT   86 (109)
Q Consensus        79 i~~~fq~~   86 (109)
                      ++++||++
T Consensus        79 i~~~~q~~   86 (241)
T PRK14250         79 IGMVFQQP   86 (241)
T ss_pred             EEEEecCc
Confidence            99999985

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.60  E-value=5.3e-16  Score=102.22  Aligned_cols=78  Identities=18%  Similarity=0.250  Sum_probs=54.9

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+..   +.........+..|
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~---~~~~~~~~~~~~~i   77 (222)
T cd03224           1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRD---ITGLPPHERARAGI   77 (222)
T ss_pred             CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE---cCCCCHHHHHhcCe
Confidence            356677 5676655566655     89999999999999999999999999999998755421   11111111113468


Q ss_pred             EEEEecC
Q psy16868         80 EIVFDNT   86 (109)
Q Consensus        80 ~~~fq~~   86 (109)
                      +++||++
T Consensus        78 ~~~~q~~   84 (222)
T cd03224          78 GYVPEGR   84 (222)
T ss_pred             EEecccc
Confidence            9999986

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.60  E-value=7.2e-16  Score=102.22  Aligned_cols=78  Identities=15%  Similarity=0.196  Sum_probs=55.1

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      ++++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...   .........+..+
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~---~~~~~~~~~~~~i   77 (232)
T cd03218           1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDI---TKLPMHKRARLGI   77 (232)
T ss_pred             CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEec---ccCCHhHHHhccE
Confidence            356677 6676655566665     889999999999999999999999999999987554311   1101001113468


Q ss_pred             EEEEecC
Q psy16868         80 EIVFDNT   86 (109)
Q Consensus        80 ~~~fq~~   86 (109)
                      +++||++
T Consensus        78 ~~~~q~~   84 (232)
T cd03218          78 GYLPQEA   84 (232)
T ss_pred             EEecCCc
Confidence            9999976

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.60  E-value=1.2e-15  Score=106.95  Aligned_cols=76  Identities=13%  Similarity=0.239  Sum_probs=59.6

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      .|+++|+ +.|.+..++++++     |++++|+|||||||||||++|+|+..++.|.+.+++...    ..  .+..++.
T Consensus         6 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i----~~--~~~~~r~   79 (351)
T PRK11432          6 FVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDV----TH--RSIQQRD   79 (351)
T ss_pred             EEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEEC----CC--CCHHHCC
Confidence            5788898 7787766566565     899999999999999999999999999999988655311    11  1223567


Q ss_pred             EEEEEecC
Q psy16868         79 VEIVFDNT   86 (109)
Q Consensus        79 i~~~fq~~   86 (109)
                      |+++||++
T Consensus        80 ig~vfQ~~   87 (351)
T PRK11432         80 ICMVFQSY   87 (351)
T ss_pred             EEEEeCCc
Confidence            99999986

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.60  E-value=7.8e-16  Score=98.75  Aligned_cols=81  Identities=15%  Similarity=0.206  Sum_probs=62.7

Q ss_pred             EEEece-eecCCCe-eEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          6 VIIHGF-KSYKEQT-VVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         6 i~i~n~-~~~~~~~-~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      |+++|. +.|..-. ++.+++     ++++.|+||+||||||||+.|++...|+.|.+.+++.....+ .+.+.+..++.
T Consensus         2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l-~~~~iP~LRR~   80 (223)
T COG2884           2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRL-KGREIPFLRRQ   80 (223)
T ss_pred             eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccc-cccccchhhhe
Confidence            567788 7776643 555554     899999999999999999999999999999998766433222 33445556889


Q ss_pred             EEEEEecCC
Q psy16868         79 VEIVFDNTD   87 (109)
Q Consensus        79 i~~~fq~~~   87 (109)
                      |++|||+..
T Consensus        81 IGvVFQD~r   89 (223)
T COG2884          81 IGVVFQDFR   89 (223)
T ss_pred             eeeEeeecc
Confidence            999999863

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.60  E-value=7e-16  Score=102.55  Aligned_cols=79  Identities=20%  Similarity=0.273  Sum_probs=55.8

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCC-CCceeeEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGT-GPRVVNAY   78 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   78 (109)
                      |+++|+ ..|.+..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...  ..... .....+..
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~--~~~~~~~~~~~~~~   78 (235)
T cd03261           1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDI--SGLSEAELYRLRRR   78 (235)
T ss_pred             CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc--cccChhhHHHHhcc
Confidence            356677 5676655566665     899999999999999999999999999999987554311  00000 00122457


Q ss_pred             EEEEEecC
Q psy16868         79 VEIVFDNT   86 (109)
Q Consensus        79 i~~~fq~~   86 (109)
                      |+++||++
T Consensus        79 i~~v~q~~   86 (235)
T cd03261          79 MGMLFQSG   86 (235)
T ss_pred             eEEEccCc
Confidence            99999986

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.59  E-value=4.7e-16  Score=110.93  Aligned_cols=81  Identities=14%  Similarity=0.208  Sum_probs=65.3

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      .+++.+. +.|....+.++++     |++++|+|+||||||||+++|+|++.|++|.+.++++   -+....+.+..+..
T Consensus         4 ~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~---~v~~~sP~dA~~~G   80 (501)
T COG3845           4 ALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGK---EVRIKSPRDAIRLG   80 (501)
T ss_pred             eEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCE---EeccCCHHHHHHcC
Confidence            5788888 8888766655555     8999999999999999999999999999999987664   23334444556788


Q ss_pred             EEEEEecCCC
Q psy16868         79 VEIVFDNTDH   88 (109)
Q Consensus        79 i~~~fq~~~~   88 (109)
                      |+||+|++.-
T Consensus        81 IGMVhQHF~L   90 (501)
T COG3845          81 IGMVHQHFML   90 (501)
T ss_pred             CcEEeecccc
Confidence            9999999744

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.59  E-value=5.9e-16  Score=102.29  Aligned_cols=81  Identities=17%  Similarity=0.293  Sum_probs=64.4

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      .|+++++ ++|++..++++++     |++++|+||+|+||||||+.|.|++.|+.|.+.+.+....-. ........+.+
T Consensus         8 ~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~l-s~~~~~~ir~r   86 (263)
T COG1127           8 LIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQL-SEEELYEIRKR   86 (263)
T ss_pred             eEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhcc-CHHHHHHHHhh
Confidence            5889999 8899988787776     899999999999999999999999999999998665422111 11122344678


Q ss_pred             EEEEEecC
Q psy16868         79 VEIVFDNT   86 (109)
Q Consensus        79 i~~~fq~~   86 (109)
                      ++++||+.
T Consensus        87 ~GvlFQ~g   94 (263)
T COG1127          87 MGVLFQQG   94 (263)
T ss_pred             eeEEeecc
Confidence            99999986

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.59  E-value=5.9e-16  Score=102.87  Aligned_cols=78  Identities=17%  Similarity=0.241  Sum_probs=54.2

Q ss_pred             EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      +++|+ ..|.+..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+..   +.........+..++
T Consensus         2 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~---~~~~~~~~~~~~~i~   78 (236)
T cd03219           2 EVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGED---ITGLPPHEIARLGIG   78 (236)
T ss_pred             eeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEE---CCCCCHHHHHhcCEE
Confidence            45666 5666555566555     88999999999999999999999999999998754421   111110011134589


Q ss_pred             EEEecCC
Q psy16868         81 IVFDNTD   87 (109)
Q Consensus        81 ~~fq~~~   87 (109)
                      ++||++.
T Consensus        79 ~v~q~~~   85 (236)
T cd03219          79 RTFQIPR   85 (236)
T ss_pred             EEecccc
Confidence            9999863

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.59  E-value=8.6e-16  Score=101.23  Aligned_cols=77  Identities=21%  Similarity=0.299  Sum_probs=56.1

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|+ +.|.+..++++++     +++++|+||||||||||+++|+|++.|..|.+.+.+...   .. . ....+..+
T Consensus         1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~---~~-~-~~~~~~~i   75 (220)
T cd03265           1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDV---VR-E-PREVRRRI   75 (220)
T ss_pred             CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEec---Cc-C-hHHHhhcE
Confidence            356777 6676655666665     899999999999999999999999999999987554211   11 1 11224568


Q ss_pred             EEEEecCC
Q psy16868         80 EIVFDNTD   87 (109)
Q Consensus        80 ~~~fq~~~   87 (109)
                      +++||++.
T Consensus        76 ~~~~q~~~   83 (220)
T cd03265          76 GIVFQDLS   83 (220)
T ss_pred             EEecCCcc
Confidence            99999864

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.59  E-value=1.1e-15  Score=100.19  Aligned_cols=75  Identities=15%  Similarity=0.250  Sum_probs=54.7

Q ss_pred             EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      +++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...   .. ..  .....++
T Consensus         2 ~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~---~~-~~--~~~~~i~   75 (213)
T cd03259           2 ELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDV---TG-VP--PERRNIG   75 (213)
T ss_pred             eeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEc---Cc-Cc--hhhccEE
Confidence            46666 5676555566655     889999999999999999999999999999987554311   11 11  1235689


Q ss_pred             EEEecCC
Q psy16868         81 IVFDNTD   87 (109)
Q Consensus        81 ~~fq~~~   87 (109)
                      +++|++.
T Consensus        76 ~v~q~~~   82 (213)
T cd03259          76 MVFQDYA   82 (213)
T ss_pred             EEcCchh
Confidence            9999863

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.59  E-value=1.7e-15  Score=106.22  Aligned_cols=75  Identities=20%  Similarity=0.293  Sum_probs=58.3

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.+..|.+.+.+...   . ..  ...++.|
T Consensus         3 L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i---~-~~--~~~~r~i   76 (353)
T PRK10851          3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDV---S-RL--HARDRKV   76 (353)
T ss_pred             EEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC---C-CC--CHHHCCE
Confidence            678888 7787766666665     899999999999999999999999999999988655311   1 11  1224579


Q ss_pred             EEEEecC
Q psy16868         80 EIVFDNT   86 (109)
Q Consensus        80 ~~~fq~~   86 (109)
                      +++||++
T Consensus        77 ~~v~Q~~   83 (353)
T PRK10851         77 GFVFQHY   83 (353)
T ss_pred             EEEecCc
Confidence            9999985

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.59  E-value=9.8e-15  Score=114.01  Aligned_cols=87  Identities=36%  Similarity=0.581  Sum_probs=62.8

Q ss_pred             eeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCC-CceeeEEEE
Q psy16868          2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTG-PRVVNAYVE   80 (109)
Q Consensus         2 ~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~   80 (109)
                      +|++|.+.||++|.+...+ +|++++++|+|||||||||+++||.++++...+.........+++..+.. .....+.|.
T Consensus         1 ~i~~l~l~nf~s~~~~~~i-~f~~~~~~i~G~NGsGKS~ildAi~~~l~~~~~~~~r~~~~~~~i~~~~~~~~~~~~~v~   79 (1164)
T TIGR02169         1 YIERIELENFKSFGKKKVI-PFSKGFTVISGPNGSGKSNIGDAILFALGLSSSKAMRAERLSDLISNGKNGQSGNEAYVT   79 (1164)
T ss_pred             CeeEEEEeCeeeECCeeEE-eecCCeEEEECCCCCCHHHHHHHHHHHhccchhhhhhhhhHHHhhcccccCCCCceEEEE
Confidence            4789999999999875556 78889999999999999999999999997654321112223345544211 123367888


Q ss_pred             EEEecCCCC
Q psy16868         81 IVFDNTDHR   89 (109)
Q Consensus        81 ~~fq~~~~~   89 (109)
                      +.|.+....
T Consensus        80 ~~f~~~~~~   88 (1164)
T TIGR02169        80 VTFKNDDGK   88 (1164)
T ss_pred             EEEEcCCCC
Confidence            899887655

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.59  E-value=1.7e-15  Score=106.77  Aligned_cols=77  Identities=22%  Similarity=0.286  Sum_probs=59.0

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      .|+++|+ +.|.+..++++++     |++++|+|||||||||||++|+|++.|..|.+.+.+...    ...  ....+.
T Consensus         3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i----~~~--~~~~~~   76 (369)
T PRK11000          3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRM----NDV--PPAERG   76 (369)
T ss_pred             EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEEC----CCC--CHhHCC
Confidence            4888998 7787766666665     899999999999999999999999999999988555311    111  112356


Q ss_pred             EEEEEecCC
Q psy16868         79 VEIVFDNTD   87 (109)
Q Consensus        79 i~~~fq~~~   87 (109)
                      |+++||++.
T Consensus        77 i~~v~Q~~~   85 (369)
T PRK11000         77 VGMVFQSYA   85 (369)
T ss_pred             EEEEeCCcc
Confidence            999999863

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.59  E-value=2.6e-16  Score=104.06  Aligned_cols=78  Identities=19%  Similarity=0.237  Sum_probs=61.5

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      ++++++ ++|+...++++++     +++++|+|||||||||++++|+|.+.|+.|.+.+.+....   .-.+....+..|
T Consensus         5 L~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it---~l~p~~iar~Gi   81 (250)
T COG0411           5 LEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDIT---GLPPHRIARLGI   81 (250)
T ss_pred             eeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccC---CCCHHHHHhccc
Confidence            678898 8899888887776     8999999999999999999999999999999986664211   111222335667


Q ss_pred             EEEEecC
Q psy16868         80 EIVFDNT   86 (109)
Q Consensus        80 ~~~fq~~   86 (109)
                      .-.||++
T Consensus        82 ~RTFQ~~   88 (250)
T COG0411          82 ARTFQIT   88 (250)
T ss_pred             eeecccc
Confidence            8889986

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.59  E-value=1.6e-15  Score=107.10  Aligned_cols=77  Identities=21%  Similarity=0.277  Sum_probs=59.5

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      .|+++|+ +.|.+..++++++     |++++|+|||||||||||++|+|++.+..|.+.+.+...    ..  .+..++.
T Consensus        14 ~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i----~~--~~~~~r~   87 (375)
T PRK09452         14 LVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDI----TH--VPAENRH   87 (375)
T ss_pred             eEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEEC----CC--CCHHHCC
Confidence            4788898 7787766566555     899999999999999999999999999999988655311    11  1122467


Q ss_pred             EEEEEecCC
Q psy16868         79 VEIVFDNTD   87 (109)
Q Consensus        79 i~~~fq~~~   87 (109)
                      |+++||++.
T Consensus        88 ig~vfQ~~~   96 (375)
T PRK09452         88 VNTVFQSYA   96 (375)
T ss_pred             EEEEecCcc
Confidence            999999863

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.59  E-value=1.9e-15  Score=106.25  Aligned_cols=78  Identities=17%  Similarity=0.272  Sum_probs=60.4

Q ss_pred             eEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCc--ccccccchhhhhhhcCCCCcee
Q psy16868          4 KQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDES--TSLRHSDSRQALLHEGTGPRVV   75 (109)
Q Consensus         4 ~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~   75 (109)
                      ..|+++|+ +.|....++++++     +++++|+|||||||||||++|+|++.|..  |.+.+.+...    ..  .+..
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~----~~--~~~~   77 (362)
T TIGR03258         4 GGIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDL----TH--APPH   77 (362)
T ss_pred             eEEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEEC----CC--CCHH
Confidence            36888998 7887766666665     88999999999999999999999999999  9988655311    11  1122


Q ss_pred             eEEEEEEEecCC
Q psy16868         76 NAYVEIVFDNTD   87 (109)
Q Consensus        76 ~~~i~~~fq~~~   87 (109)
                      .+.|+++||++.
T Consensus        78 ~r~ig~vfQ~~~   89 (362)
T TIGR03258        78 KRGLALLFQNYA   89 (362)
T ss_pred             HCCEEEEECCcc
Confidence            467999999864

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.59  E-value=1.4e-15  Score=104.68  Aligned_cols=77  Identities=19%  Similarity=0.263  Sum_probs=58.7

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...   ..  .....+..|
T Consensus         5 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~---~~--~~~~~~~~i   79 (303)
T TIGR01288         5 IDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPV---PS--RARLARVAI   79 (303)
T ss_pred             EEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC---cc--cHHHHhhcE
Confidence            778888 7787766676665     899999999999999999999999999999987554311   11  111224679


Q ss_pred             EEEEecCC
Q psy16868         80 EIVFDNTD   87 (109)
Q Consensus        80 ~~~fq~~~   87 (109)
                      ++++|++.
T Consensus        80 ~~v~q~~~   87 (303)
T TIGR01288        80 GVVPQFDN   87 (303)
T ss_pred             EEEecccc
Confidence            99999864

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.59  E-value=8.6e-16  Score=101.78  Aligned_cols=78  Identities=18%  Similarity=0.252  Sum_probs=55.1

Q ss_pred             EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      +++|+ ..|.+..++++++     |++++|+|+||||||||+++|+|++.|..|.+.+.+..   +............++
T Consensus         2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~---~~~~~~~~~~~~~i~   78 (230)
T TIGR03410         2 EVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGED---ITKLPPHERARAGIA   78 (230)
T ss_pred             EEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEE---CCCCCHHHHHHhCeE
Confidence            46676 5676555566655     89999999999999999999999999999998755421   111111111135689


Q ss_pred             EEEecCC
Q psy16868         81 IVFDNTD   87 (109)
Q Consensus        81 ~~fq~~~   87 (109)
                      ++||++.
T Consensus        79 ~~~q~~~   85 (230)
T TIGR03410        79 YVPQGRE   85 (230)
T ss_pred             EeccCCc
Confidence            9999863

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.58  E-value=9.9e-16  Score=103.88  Aligned_cols=80  Identities=19%  Similarity=0.318  Sum_probs=57.6

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...  ..........+..|
T Consensus         2 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i--~~~~~~~~~~~~~i   79 (271)
T PRK13638          2 LATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL--DYSKRGLLALRQQV   79 (271)
T ss_pred             eEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEc--ccccCCHHHHHhhe
Confidence            567888 6776655565555     889999999999999999999999999999987555311  10111111224569


Q ss_pred             EEEEecCC
Q psy16868         80 EIVFDNTD   87 (109)
Q Consensus        80 ~~~fq~~~   87 (109)
                      +++||++.
T Consensus        80 ~~v~q~~~   87 (271)
T PRK13638         80 ATVFQDPE   87 (271)
T ss_pred             EEEeeChh
Confidence            99999864

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.58  E-value=1.5e-15  Score=107.98  Aligned_cols=79  Identities=22%  Similarity=0.286  Sum_probs=61.0

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|+ +.|.+..++++++     |++++|+|||||||||||++|+|++.|..|.+.+.+...    .........+.+
T Consensus         4 L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i----~~~~~~~~~~~i   79 (402)
T PRK09536          4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDV----EALSARAASRRV   79 (402)
T ss_pred             EEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEc----CcCCHHHHhcce
Confidence            788898 7888777777776     899999999999999999999999999999988655311    111112235679


Q ss_pred             EEEEecCCC
Q psy16868         80 EIVFDNTDH   88 (109)
Q Consensus        80 ~~~fq~~~~   88 (109)
                      ++++|++..
T Consensus        80 g~v~q~~~l   88 (402)
T PRK09536         80 ASVPQDTSL   88 (402)
T ss_pred             EEEccCCCC
Confidence            999998643

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.58  E-value=1e-15  Score=100.32  Aligned_cols=79  Identities=22%  Similarity=0.339  Sum_probs=55.1

Q ss_pred             EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      +++|+ ..|....++++++     |++++|+||||||||||+++|+|++.+..|.+.+.+...  ..........+..|+
T Consensus         2 ~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~--~~~~~~~~~~~~~i~   79 (213)
T cd03262           2 EIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKL--TDDKKNINELRQKVG   79 (213)
T ss_pred             EEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC--CccchhHHHHHhcce
Confidence            45666 5566555555554     889999999999999999999999999999987554311  101111112246799


Q ss_pred             EEEecCC
Q psy16868         81 IVFDNTD   87 (109)
Q Consensus        81 ~~fq~~~   87 (109)
                      +++|++.
T Consensus        80 ~~~q~~~   86 (213)
T cd03262          80 MVFQQFN   86 (213)
T ss_pred             EEecccc
Confidence            9999863

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR00611 recf recF protein

Probab=99.58  E-value=1.9e-14  Score=101.31  Aligned_cols=81  Identities=26%  Similarity=0.445  Sum_probs=61.9

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      |++.+|++.||++|.+.. + ++++++++|+||||+|||||++||+.+..+.+.+.   ....+++..+..    ...|.
T Consensus         1 M~l~~L~i~nFR~~~~~~-l-~~~~~~nvi~G~NGsGKT~lLeAi~~l~~~~s~R~---~~~~~li~~g~~----~~~v~   71 (365)
T TIGR00611         1 MYLSRLELTDFRNYDAVD-L-ELSPGVNVIVGPNGQGKTNLLEAIYYLALGRSHRT---SRDKPLIRFGAE----AFVIE   71 (365)
T ss_pred             CEEEEEEEeCCcceeeeE-E-EECCCeEEEECCCCCCHHHHHHHHHHHcccCCccc---cchhhHHhCCCC----eEEEE
Confidence            899999999999998766 5 67788999999999999999999998876654332   123445655544    67788


Q ss_pred             EEEecCCCCC
Q psy16868         81 IVFDNTDHRV   90 (109)
Q Consensus        81 ~~fq~~~~~~   90 (109)
                      ..|...+...
T Consensus        72 ~~~~~~~~~~   81 (365)
T TIGR00611        72 GRVSKGDREV   81 (365)
T ss_pred             EEEEeCCceE
Confidence            8887654443

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.58  E-value=3.9e-16  Score=104.13  Aligned_cols=77  Identities=17%  Similarity=0.272  Sum_probs=62.4

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|. +.|.+..++++++     +++.+|+||+||||||+|++|..++.|++|.+.+++..    ....+....+++|
T Consensus         2 I~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~----i~~~d~~~LRr~I   77 (309)
T COG1125           2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGED----ISDLDPVELRRKI   77 (309)
T ss_pred             ceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCee----cccCCHHHHHHhh
Confidence            578888 8898887777776     89999999999999999999999999999999866531    1233344557889


Q ss_pred             EEEEecC
Q psy16868         80 EIVFDNT   86 (109)
Q Consensus        80 ~~~fq~~   86 (109)
                      +|+.|..
T Consensus        78 GYviQqi   84 (309)
T COG1125          78 GYVIQQI   84 (309)
T ss_pred             hhhhhhc
Confidence            9998874

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.58  E-value=1.2e-15  Score=104.32  Aligned_cols=84  Identities=17%  Similarity=0.245  Sum_probs=57.9

Q ss_pred             EEEece-eecCCC-----eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCce
Q psy16868          6 VIIHGF-KSYKEQ-----TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRV   74 (109)
Q Consensus         6 i~i~n~-~~~~~~-----~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   74 (109)
                      |+++|+ ..|...     .++++++     |++++|+|+||||||||+++|+|++.|..|.+.+.+..............
T Consensus         2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   81 (288)
T PRK13643          2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP   81 (288)
T ss_pred             EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence            567777 667521     2566665     89999999999999999999999999999998855531110000011112


Q ss_pred             eeEEEEEEEecCCCC
Q psy16868         75 VNAYVEIVFDNTDHR   89 (109)
Q Consensus        75 ~~~~i~~~fq~~~~~   89 (109)
                      .+..|+++||++...
T Consensus        82 ~~~~ig~v~q~~~~~   96 (288)
T PRK13643         82 VRKKVGVVFQFPESQ   96 (288)
T ss_pred             HHhhEEEEecCcchh
Confidence            356799999987433

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.58  E-value=1e-14  Score=96.07  Aligned_cols=81  Identities=23%  Similarity=0.361  Sum_probs=58.4

Q ss_pred             eeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEE
Q psy16868          2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEI   81 (109)
Q Consensus         2 ~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   81 (109)
                      .|.+|+++||++|++.. + +++.++++|+|+||+||||||+||+.++..............+++..+..    ...|.+
T Consensus         2 ~i~~i~i~nfr~~~~~~-i-~~~~g~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~----~~~v~~   75 (213)
T cd03277           2 SIVRIKLENFVTYDETE-F-RPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCD----EGTIEI   75 (213)
T ss_pred             eeEEEEEeCCCCcceeE-E-ecCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCC----cEEEEE
Confidence            36789999999996554 5 77788999999999999999999999997654322112223445555543    566777


Q ss_pred             EEecCCC
Q psy16868         82 VFDNTDH   88 (109)
Q Consensus        82 ~fq~~~~   88 (109)
                      .|+..+.
T Consensus        76 ~~~~~~~   82 (213)
T cd03277          76 ELYGNPG   82 (213)
T ss_pred             EEEeCCC
Confidence            7776543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.58  E-value=7.6e-16  Score=104.90  Aligned_cols=82  Identities=15%  Similarity=0.239  Sum_probs=62.1

Q ss_pred             EEEece-eecCC-----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCce
Q psy16868          6 VIIHGF-KSYKE-----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRV   74 (109)
Q Consensus         6 i~i~n~-~~~~~-----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   74 (109)
                      |++++. +.|..     ..++++++     |++.+|+|.+|||||||+++|.++..|++|.+..++.... ...+...+.
T Consensus         2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~-~l~~~~Lr~   80 (339)
T COG1135           2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLT-ALSEAELRQ   80 (339)
T ss_pred             eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecc-cCChHHHHH
Confidence            566666 66654     34566665     8999999999999999999999999999999886663221 223344455


Q ss_pred             eeEEEEEEEecCCC
Q psy16868         75 VNAYVEIVFDNTDH   88 (109)
Q Consensus        75 ~~~~i~~~fq~~~~   88 (109)
                      .++.|+|+||+++-
T Consensus        81 ~R~~IGMIFQhFnL   94 (339)
T COG1135          81 LRQKIGMIFQHFNL   94 (339)
T ss_pred             HHhhccEEeccccc
Confidence            68899999999754

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.58  E-value=2.8e-15  Score=98.23  Aligned_cols=75  Identities=16%  Similarity=0.231  Sum_probs=54.8

Q ss_pred             EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      +++|+ ..|....++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...   .. ..  ..+..++
T Consensus         2 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~---~~-~~--~~~~~i~   75 (213)
T cd03301           2 ELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDV---TD-LP--PKDRDIA   75 (213)
T ss_pred             EEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC---Cc-CC--cccceEE
Confidence            46666 5666555566655     889999999999999999999999999999987554311   11 11  1135799


Q ss_pred             EEEecCC
Q psy16868         81 IVFDNTD   87 (109)
Q Consensus        81 ~~fq~~~   87 (109)
                      +++|++.
T Consensus        76 ~~~q~~~   82 (213)
T cd03301          76 MVFQNYA   82 (213)
T ss_pred             EEecChh
Confidence            9999863

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.58  E-value=1.8e-15  Score=100.12  Aligned_cols=78  Identities=13%  Similarity=0.244  Sum_probs=58.0

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.+..|.+.+.+..   +. ..........+
T Consensus         8 i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~---~~-~~~~~~~~~~i   83 (225)
T PRK10247          8 LQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGED---IS-TLKPEIYRQQV   83 (225)
T ss_pred             EEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEE---cC-cCCHHHHHhcc
Confidence            778888 6787666677666     89999999999999999999999999999998754421   10 11111124578


Q ss_pred             EEEEecCC
Q psy16868         80 EIVFDNTD   87 (109)
Q Consensus        80 ~~~fq~~~   87 (109)
                      +++||++.
T Consensus        84 ~~~~q~~~   91 (225)
T PRK10247         84 SYCAQTPT   91 (225)
T ss_pred             EEEecccc
Confidence            99998853

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.58  E-value=1.1e-15  Score=101.61  Aligned_cols=80  Identities=16%  Similarity=0.239  Sum_probs=56.3

Q ss_pred             EEEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCC-c
Q psy16868          5 QVIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGP-R   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~-~   73 (109)
                      -++++|+ +.|.+    ..++++++     +++++|+||||||||||+++|+|++.|..|.+.+.+...  ....... .
T Consensus         5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i--~~~~~~~~~   82 (233)
T PRK11629          5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPM--SKLSSAAKA   82 (233)
T ss_pred             eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEc--CcCCHHHHH
Confidence            4788888 67754    34566655     889999999999999999999999999999988554311  0000000 0


Q ss_pred             -eeeEEEEEEEecC
Q psy16868         74 -VVNAYVEIVFDNT   86 (109)
Q Consensus        74 -~~~~~i~~~fq~~   86 (109)
                       ..+..|+++||++
T Consensus        83 ~~~~~~i~~v~q~~   96 (233)
T PRK11629         83 ELRNQKLGFIYQFH   96 (233)
T ss_pred             HHHhccEEEEecCc
Confidence             0125699999985

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.58  E-value=1.7e-15  Score=101.07  Aligned_cols=79  Identities=16%  Similarity=0.240  Sum_probs=58.0

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      .++++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.+..|.+.+.+..   +.........+..
T Consensus         3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~---~~~~~~~~~~~~~   79 (241)
T PRK10895          3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDED---ISLLPLHARARRG   79 (241)
T ss_pred             eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE---CCCCCHHHHHHhC
Confidence            3788888 6787666676666     89999999999999999999999999999998755421   1110110112356


Q ss_pred             EEEEEecC
Q psy16868         79 VEIVFDNT   86 (109)
Q Consensus        79 i~~~fq~~   86 (109)
                      |++++|++
T Consensus        80 i~~~~q~~   87 (241)
T PRK10895         80 IGYLPQEA   87 (241)
T ss_pred             eEEeccCC
Confidence            89999986

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.58  E-value=1.3e-15  Score=103.55  Aligned_cols=80  Identities=16%  Similarity=0.335  Sum_probs=58.9

Q ss_pred             EEEEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          5 QVIIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         5 ~i~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      .|+++|+ +.|. ...++++++     |++++|+|+||||||||+++|+|++.|..|.+.+.+...    ........+.
T Consensus         4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~----~~~~~~~~~~   79 (274)
T PRK13647          4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREV----NAENEKWVRS   79 (274)
T ss_pred             eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEC----CCCCHHHHHh
Confidence            3778888 6775 344566665     899999999999999999999999999999988555311    1111122245


Q ss_pred             EEEEEEecCCC
Q psy16868         78 YVEIVFDNTDH   88 (109)
Q Consensus        78 ~i~~~fq~~~~   88 (109)
                      .|+++||++..
T Consensus        80 ~i~~v~q~~~~   90 (274)
T PRK13647         80 KVGLVFQDPDD   90 (274)
T ss_pred             hEEEEecChhh
Confidence            79999998743

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.58  E-value=1.8e-15  Score=102.79  Aligned_cols=80  Identities=21%  Similarity=0.299  Sum_probs=57.3

Q ss_pred             EEEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          6 VIIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         6 i~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      ++++|+ +.|. ...++++++     |++++|+|+||||||||+++|+|++.+..|.+.+.+..   +............
T Consensus         2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~---~~~~~~~~~~~~~   78 (274)
T PRK13644          2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGID---TGDFSKLQGIRKL   78 (274)
T ss_pred             EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE---CCccccHHHHHhh
Confidence            567787 6774 344566665     89999999999999999999999999999998755431   1111111122457


Q ss_pred             EEEEEecCCC
Q psy16868         79 VEIVFDNTDH   88 (109)
Q Consensus        79 i~~~fq~~~~   88 (109)
                      |+++||++..
T Consensus        79 i~~v~q~~~~   88 (274)
T PRK13644         79 VGIVFQNPET   88 (274)
T ss_pred             eEEEEEChhh
Confidence            9999998753

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.58  E-value=2.6e-15  Score=99.20  Aligned_cols=80  Identities=20%  Similarity=0.252  Sum_probs=56.5

Q ss_pred             EEEece-eecCCC----eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCC-CCce
Q psy16868          6 VIIHGF-KSYKEQ----TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGT-GPRV   74 (109)
Q Consensus         6 i~i~n~-~~~~~~----~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~   74 (109)
                      |+++|+ ..|.+.    .++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...  ..... ....
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~--~~~~~~~~~~   79 (228)
T cd03257           2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDL--LKLSRRLRKI   79 (228)
T ss_pred             eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEc--cccchhhHHH
Confidence            456777 567543    4566665     899999999999999999999999999999987554311  00000 0112


Q ss_pred             eeEEEEEEEecCC
Q psy16868         75 VNAYVEIVFDNTD   87 (109)
Q Consensus        75 ~~~~i~~~fq~~~   87 (109)
                      .+..+++++|++.
T Consensus        80 ~~~~i~~~~q~~~   92 (228)
T cd03257          80 RRKEIQMVFQDPM   92 (228)
T ss_pred             hhccEEEEecCch
Confidence            3467999999873

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.58  E-value=1.7e-15  Score=100.82  Aligned_cols=81  Identities=12%  Similarity=0.170  Sum_probs=58.7

Q ss_pred             eEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          4 KQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         4 ~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      --++++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+..   +.........+.
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~---~~~~~~~~~~~~   80 (237)
T PRK11614          4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKD---ITDWQTAKIMRE   80 (237)
T ss_pred             cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEe---cCCCCHHHHHHh
Confidence            34788888 6787665666665     89999999999999999999999999999998755431   111000111245


Q ss_pred             EEEEEEecCC
Q psy16868         78 YVEIVFDNTD   87 (109)
Q Consensus        78 ~i~~~fq~~~   87 (109)
                      .+++++|++.
T Consensus        81 ~i~~~~q~~~   90 (237)
T PRK11614         81 AVAIVPEGRR   90 (237)
T ss_pred             CEEEeccCcc
Confidence            6899998753

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.57  E-value=1.9e-15  Score=103.33  Aligned_cols=83  Identities=16%  Similarity=0.233  Sum_probs=57.9

Q ss_pred             EEEEece-eecCC-----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCc
Q psy16868          5 QVIIHGF-KSYKE-----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~-----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~   73 (109)
                      .|+++|+ +.|..     ..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+.............
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK   81 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            4678888 77853     23566665     8999999999999999999999999999999885543110000000111


Q ss_pred             eeeEEEEEEEecCC
Q psy16868         74 VVNAYVEIVFDNTD   87 (109)
Q Consensus        74 ~~~~~i~~~fq~~~   87 (109)
                      ..+..|+++||++.
T Consensus        82 ~~~~~ig~v~q~~~   95 (287)
T PRK13641         82 KLRKKVSLVFQFPE   95 (287)
T ss_pred             HHHhceEEEEeChh
Confidence            22457999999864

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.57  E-value=2.2e-15  Score=99.29  Aligned_cols=72  Identities=19%  Similarity=0.197  Sum_probs=53.8

Q ss_pred             EEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          7 IIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         7 ~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      +++|+ +.|.+    ..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...   .      ...
T Consensus         2 ~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~---~------~~~   72 (220)
T cd03293           2 EVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPV---T------GPG   72 (220)
T ss_pred             eEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC---c------ccc
Confidence            46666 56765    45566665     889999999999999999999999999999887544211   0      123


Q ss_pred             EEEEEEEecCC
Q psy16868         77 AYVEIVFDNTD   87 (109)
Q Consensus        77 ~~i~~~fq~~~   87 (109)
                      ..+++++|.+.
T Consensus        73 ~~i~~v~q~~~   83 (220)
T cd03293          73 PDRGYVFQQDA   83 (220)
T ss_pred             CcEEEEecccc
Confidence            56899998753

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.57  E-value=1.5e-15  Score=99.99  Aligned_cols=76  Identities=16%  Similarity=0.187  Sum_probs=55.0

Q ss_pred             EEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          6 VIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         6 i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      |+++|+ +.|.+  ..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...   .. . ......
T Consensus         1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~---~~-~-~~~~~~   75 (220)
T cd03263           1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSI---RT-D-RKAARQ   75 (220)
T ss_pred             CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEec---cc-c-hHHHhh
Confidence            356677 56765  45566655     889999999999999999999999999999987554311   11 1 112245


Q ss_pred             EEEEEEecC
Q psy16868         78 YVEIVFDNT   86 (109)
Q Consensus        78 ~i~~~fq~~   86 (109)
                      .++++||++
T Consensus        76 ~i~~v~q~~   84 (220)
T cd03263          76 SLGYCPQFD   84 (220)
T ss_pred             hEEEecCcC
Confidence            699999975

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.57  E-value=2.1e-15  Score=98.71  Aligned_cols=72  Identities=13%  Similarity=0.158  Sum_probs=53.3

Q ss_pred             EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      +++|+ ..|.+..++++++     |++++|+||||||||||+++|+|++.+..|.+.+.+....   .     ..+..++
T Consensus         2 ~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~---~-----~~~~~i~   73 (210)
T cd03269           2 EVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLD---I-----AARNRIG   73 (210)
T ss_pred             EEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchh---H-----HHHccEE
Confidence            45666 5565545555554     8899999999999999999999999999999875543111   0     1245689


Q ss_pred             EEEecC
Q psy16868         81 IVFDNT   86 (109)
Q Consensus        81 ~~fq~~   86 (109)
                      +++|++
T Consensus        74 ~~~q~~   79 (210)
T cd03269          74 YLPEER   79 (210)
T ss_pred             EeccCC
Confidence            999886

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]

Probab=99.57  E-value=1.5e-14  Score=100.98  Aligned_cols=87  Identities=23%  Similarity=0.395  Sum_probs=67.0

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      |.+.++.+.||++|.+.. + ++++++++|+|+||+|||+||+||..+-.+.+-+.   ....+++..+.+    ...|.
T Consensus         1 M~l~~L~L~nFRNy~~~~-l-~~~p~~nvl~G~NgqGKTNlLEAI~~l~~grS~Rt---~~~~~lir~~~~----~~~i~   71 (363)
T COG1195           1 MYLLSLLLRNFRNYAELD-L-DLSPGVNVLVGENGQGKTNLLEAIYLLALGRSHRT---SRDKELIRTGAD----EAEIS   71 (363)
T ss_pred             CceeeeehhhcCCcccce-e-ccCCCcEEEECCCCCchHHHHHHHHHHccccCccc---cchhHHHhcCCc----cEEEE
Confidence            889999999999999887 6 89999999999999999999999998876654332   124456666665    67777


Q ss_pred             EEEecCCCCCceeEEE
Q psy16868         81 IVFDNTDHRVPGFIRC   96 (109)
Q Consensus        81 ~~fq~~~~~~~~~~~~   96 (109)
                      ...|......+.....
T Consensus        72 ~~v~~~~~~~~~~~~~   87 (363)
T COG1195          72 ARVQRKGREGTLGLQI   87 (363)
T ss_pred             EEEeeccceeeeEEEe
Confidence            7777765555544444

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.57  E-value=1.3e-15  Score=100.01  Aligned_cols=81  Identities=20%  Similarity=0.334  Sum_probs=56.2

Q ss_pred             EEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          6 VIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         6 i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      ++++|+ +.|.+  ..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...... ........+.
T Consensus         2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~~~~   80 (216)
T TIGR00960         2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRL-RGREIPFLRR   80 (216)
T ss_pred             eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhc-ChhHHHHHHH
Confidence            567787 66753  23566665     899999999999999999999999999999987555311100 0000111245


Q ss_pred             EEEEEEecCC
Q psy16868         78 YVEIVFDNTD   87 (109)
Q Consensus        78 ~i~~~fq~~~   87 (109)
                      .++++||++.
T Consensus        81 ~i~~~~q~~~   90 (216)
T TIGR00960        81 HIGMVFQDHR   90 (216)
T ss_pred             hceEEecCcc
Confidence            7999999863

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.57  E-value=2e-15  Score=95.58  Aligned_cols=76  Identities=14%  Similarity=0.262  Sum_probs=53.6

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|+ +.|.+..++.+++     |++++|+||||||||||+++|+|++.|..|.+.+.+...   .........+..+
T Consensus         1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~---~~~~~~~~~~~~i   77 (163)
T cd03216           1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEV---SFASPRDARRAGI   77 (163)
T ss_pred             CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEC---CcCCHHHHHhcCe
Confidence            356677 6676655566655     899999999999999999999999999999887554211   1100011123468


Q ss_pred             EEEEe
Q psy16868         80 EIVFD   84 (109)
Q Consensus        80 ~~~fq   84 (109)
                      +++||
T Consensus        78 ~~~~q   82 (163)
T cd03216          78 AMVYQ   82 (163)
T ss_pred             EEEEe
Confidence            88887

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.57  E-value=2.7e-15  Score=102.60  Aligned_cols=83  Identities=17%  Similarity=0.261  Sum_probs=59.0

Q ss_pred             EEEEece-eecCC-----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCc
Q psy16868          5 QVIIHGF-KSYKE-----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~-----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~   73 (109)
                      .|+++|+ +.|..     ..++++++     |++++|+|+||||||||+++|+|++.|..|.+.+.+....  .......
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~--~~~~~~~   79 (287)
T PRK13637          2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDIT--DKKVKLS   79 (287)
T ss_pred             EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECC--CcCccHH
Confidence            3778888 67753     23566665     8999999999999999999999999999999885553111  0000111


Q ss_pred             eeeEEEEEEEecCCCC
Q psy16868         74 VVNAYVEIVFDNTDHR   89 (109)
Q Consensus        74 ~~~~~i~~~fq~~~~~   89 (109)
                      ..+..|+++||++...
T Consensus        80 ~~~~~ig~v~q~~~~~   95 (287)
T PRK13637         80 DIRKKVGLVFQYPEYQ   95 (287)
T ss_pred             HHhhceEEEecCchhc
Confidence            2356799999987433

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.57  E-value=2.6e-15  Score=103.48  Aligned_cols=56  Identities=16%  Similarity=0.378  Sum_probs=46.1

Q ss_pred             EEEEece-eecCCC-----eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868          5 QVIIHGF-KSYKEQ-----TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD   60 (109)
Q Consensus         5 ~i~i~n~-~~~~~~-----~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~   60 (109)
                      .|+++|+ ..|.+.     .++++++     |++++|+|+||||||||+++|+|++.|..|.+.+.+
T Consensus         2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g   68 (305)
T PRK13651          2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIF   68 (305)
T ss_pred             EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEec
Confidence            3778888 677542     3566665     899999999999999999999999999999987543

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.57  E-value=2e-15  Score=102.26  Aligned_cols=83  Identities=18%  Similarity=0.216  Sum_probs=60.3

Q ss_pred             CeeeEEEEece-eecCCC--eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCC
Q psy16868          1 MYIKQVIIHGF-KSYKEQ--TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGP   72 (109)
Q Consensus         1 M~i~~i~i~n~-~~~~~~--~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~   72 (109)
                      |+...|+++|+ +.|.+.  .++++++     |++++|+||||||||||+++|+|++.+..|.+.+.+...    .....
T Consensus         3 ~~~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~----~~~~~   78 (269)
T PRK13648          3 DKNSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAI----TDDNF   78 (269)
T ss_pred             CCCceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC----CcCCH
Confidence            44456889998 778642  2465555     899999999999999999999999999999988554311    11111


Q ss_pred             ceeeEEEEEEEecCC
Q psy16868         73 RVVNAYVEIVFDNTD   87 (109)
Q Consensus        73 ~~~~~~i~~~fq~~~   87 (109)
                      ...+..++++||++.
T Consensus        79 ~~~~~~i~~v~q~~~   93 (269)
T PRK13648         79 EKLRKHIGIVFQNPD   93 (269)
T ss_pred             HHHHhheeEEEeChH
Confidence            123457999999874

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.57  E-value=1.8e-15  Score=100.12  Aligned_cols=80  Identities=11%  Similarity=0.216  Sum_probs=56.2

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhh-----ccCcccccccchhhhhhhcCCCCce
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVL-----SDESTSLRHSDSRQALLHEGTGPRV   74 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~   74 (109)
                      |+++|+ +.|.+..++++++     |++++|+|+||||||||+++|+|++     .+..|.+.+.+....  ........
T Consensus         1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~--~~~~~~~~   78 (227)
T cd03260           1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIY--DLDVDVLE   78 (227)
T ss_pred             CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhh--hcchHHHH
Confidence            356777 5676655666665     8999999999999999999999999     888998875553111  00100112


Q ss_pred             eeEEEEEEEecCC
Q psy16868         75 VNAYVEIVFDNTD   87 (109)
Q Consensus        75 ~~~~i~~~fq~~~   87 (109)
                      .+..|+++||++.
T Consensus        79 ~~~~i~~~~q~~~   91 (227)
T cd03260          79 LRRRVGMVFQKPN   91 (227)
T ss_pred             HHhhEEEEecCch
Confidence            2456899999863

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.57  E-value=2.4e-15  Score=102.46  Aligned_cols=83  Identities=22%  Similarity=0.248  Sum_probs=60.3

Q ss_pred             CeeeEEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCC
Q psy16868          1 MYIKQVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGP   72 (109)
Q Consensus         1 M~i~~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~   72 (109)
                      |+-.-++++|+ +.|.+  ..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...    .....
T Consensus         1 ~~~~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i----~~~~~   76 (279)
T PRK13635          1 MKEEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVL----SEETV   76 (279)
T ss_pred             CCCceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEC----CcCcH
Confidence            44335888998 67853  33566665     899999999999999999999999999999988655311    11111


Q ss_pred             ceeeEEEEEEEecCC
Q psy16868         73 RVVNAYVEIVFDNTD   87 (109)
Q Consensus        73 ~~~~~~i~~~fq~~~   87 (109)
                      ......|+++||++.
T Consensus        77 ~~~~~~i~~~~q~~~   91 (279)
T PRK13635         77 WDVRRQVGMVFQNPD   91 (279)
T ss_pred             HHHhhheEEEEeCHH
Confidence            122457999999874

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.57  E-value=1.7e-15  Score=98.90  Aligned_cols=73  Identities=18%  Similarity=0.311  Sum_probs=53.3

Q ss_pred             Eece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          8 IHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         8 i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      ++|+ +.|.+ ..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...   ..    ...+..|+
T Consensus         2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~---~~----~~~~~~i~   74 (205)
T cd03226           2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPI---KA----KERRKSIG   74 (205)
T ss_pred             cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEh---hh----HHhhcceE
Confidence            3455 55655 45566555     899999999999999999999999999999987554311   11    11245699


Q ss_pred             EEEecCC
Q psy16868         81 IVFDNTD   87 (109)
Q Consensus        81 ~~fq~~~   87 (109)
                      ++||++.
T Consensus        75 ~~~q~~~   81 (205)
T cd03226          75 YVMQDVD   81 (205)
T ss_pred             EEecChh
Confidence            9999863

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.57  E-value=1.7e-15  Score=100.24  Aligned_cols=82  Identities=17%  Similarity=0.236  Sum_probs=56.7

Q ss_pred             EEEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCC-Cc
Q psy16868          5 QVIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTG-PR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~-~~   73 (109)
                      -|+++|+ +.|.+    ..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...... .... ..
T Consensus         6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~   84 (228)
T PRK10584          6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQM-DEEARAK   84 (228)
T ss_pred             eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccC-CHHHHHH
Confidence            4778888 67764    23566665     899999999999999999999999999999987554311000 0000 00


Q ss_pred             eeeEEEEEEEecCC
Q psy16868         74 VVNAYVEIVFDNTD   87 (109)
Q Consensus        74 ~~~~~i~~~fq~~~   87 (109)
                      .....++++||++.
T Consensus        85 ~~~~~i~~~~q~~~   98 (228)
T PRK10584         85 LRAKHVGFVFQSFM   98 (228)
T ss_pred             HHhheEEEEEcccc
Confidence            11256999998863

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.57  E-value=3.2e-15  Score=105.63  Aligned_cols=77  Identities=16%  Similarity=0.213  Sum_probs=59.1

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      .|+++|+ +.|.+..++++++     |++++|+|||||||||||++|+|+..+..|.+.+.+..   + ..  .++.++.
T Consensus        19 ~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~---i-~~--~~~~~r~   92 (377)
T PRK11607         19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVD---L-SH--VPPYQRP   92 (377)
T ss_pred             eEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEE---C-CC--CCHHHCC
Confidence            3788898 7787655555554     89999999999999999999999999999998865531   1 11  1223567


Q ss_pred             EEEEEecCC
Q psy16868         79 VEIVFDNTD   87 (109)
Q Consensus        79 i~~~fq~~~   87 (109)
                      |+++||++.
T Consensus        93 ig~vfQ~~~  101 (377)
T PRK11607         93 INMMFQSYA  101 (377)
T ss_pred             EEEEeCCCc
Confidence            999999863

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.57  E-value=1.7e-15  Score=99.79  Aligned_cols=79  Identities=16%  Similarity=0.215  Sum_probs=54.8

Q ss_pred             EEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCC-CCce
Q psy16868          6 VIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGT-GPRV   74 (109)
Q Consensus         6 i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~   74 (109)
                      |+++|+ +.|.+    ..++++++     |++++|+||||||||||+++|+|++.+..|.+.+.+...  ..... ....
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~--~~~~~~~~~~   79 (221)
T TIGR02211         2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSL--SKLSSNERAK   79 (221)
T ss_pred             EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEh--hhcCHhHHHH
Confidence            567777 66753    24566555     899999999999999999999999999999987554311  00000 0000


Q ss_pred             -eeEEEEEEEecC
Q psy16868         75 -VNAYVEIVFDNT   86 (109)
Q Consensus        75 -~~~~i~~~fq~~   86 (109)
                       ....|+++||++
T Consensus        80 ~~~~~i~~v~q~~   92 (221)
T TIGR02211        80 LRNKKLGFIYQFH   92 (221)
T ss_pred             HHHhcEEEEeccc
Confidence             125699999985

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.56  E-value=2e-15  Score=101.72  Aligned_cols=82  Identities=17%  Similarity=0.215  Sum_probs=59.1

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhh--hhcCCCCce--
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQAL--LHEGTGPRV--   74 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~--   74 (109)
                      -|+++|+ +.|.+..++++++     |++++|+|+||||||||+++|+|++.|..|.+.+.+.....  +. ......  
T Consensus         6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~-~~~~~~~~   84 (258)
T PRK11701          6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLY-ALSEAERR   84 (258)
T ss_pred             eEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccc-cCCHHHHH
Confidence            4889999 7787666666665     89999999999999999999999999999998755431000  11 111000  


Q ss_pred             --eeEEEEEEEecCC
Q psy16868         75 --VNAYVEIVFDNTD   87 (109)
Q Consensus        75 --~~~~i~~~fq~~~   87 (109)
                        .+..++++||++.
T Consensus        85 ~~~~~~i~~v~q~~~   99 (258)
T PRK11701         85 RLLRTEWGFVHQHPR   99 (258)
T ss_pred             HHhhcceEEEeeCcc
Confidence              1356999999874

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.56  E-value=3.3e-15  Score=95.32  Aligned_cols=76  Identities=16%  Similarity=0.250  Sum_probs=54.2

Q ss_pred             EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      +++|+ ..|....++++++     +++++|+|+||||||||+++|+|++.+..|.+.+.+....   . .. ...+..++
T Consensus         2 ~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~---~-~~-~~~~~~i~   76 (173)
T cd03230           2 EVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIK---K-EP-EEVKRRIG   76 (173)
T ss_pred             EEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcc---c-ch-HhhhccEE
Confidence            45566 4565544555554     8899999999999999999999999999999875543111   1 11 12246799


Q ss_pred             EEEecCC
Q psy16868         81 IVFDNTD   87 (109)
Q Consensus        81 ~~fq~~~   87 (109)
                      ++||++.
T Consensus        77 ~~~q~~~   83 (173)
T cd03230          77 YLPEEPS   83 (173)
T ss_pred             EEecCCc
Confidence            9999863

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.56  E-value=1.9e-15  Score=105.65  Aligned_cols=81  Identities=14%  Similarity=0.255  Sum_probs=58.1

Q ss_pred             EEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868          6 VIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV   75 (109)
Q Consensus         6 i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (109)
                      |+++|+ +.|..    ..++++++     |++++|+||||||||||+++|++++.|+.|.+.+.+....-. ........
T Consensus         2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~-~~~~l~~~   80 (343)
T TIGR02314         2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTL-SNSELTKA   80 (343)
T ss_pred             EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcC-CHHHHHHH
Confidence            677888 67742    34677766     899999999999999999999999999999988655311100 01111123


Q ss_pred             eEEEEEEEecCC
Q psy16868         76 NAYVEIVFDNTD   87 (109)
Q Consensus        76 ~~~i~~~fq~~~   87 (109)
                      ++.|+++||++.
T Consensus        81 r~~Ig~v~Q~~~   92 (343)
T TIGR02314        81 RRQIGMIFQHFN   92 (343)
T ss_pred             hcCEEEEECCcc
Confidence            567999999863

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.56  E-value=2.5e-15  Score=98.81  Aligned_cols=76  Identities=16%  Similarity=0.240  Sum_probs=56.1

Q ss_pred             EEEece-eecCCC----eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868          6 VIIHGF-KSYKEQ----TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV   75 (109)
Q Consensus         6 i~i~n~-~~~~~~----~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (109)
                      |+++|+ +.|.+.    .++++++     |++++|+|+||||||||+++|+|++.|..|.+.+.+....   .  .....
T Consensus         2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~---~--~~~~~   76 (218)
T cd03266           2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVV---K--EPAEA   76 (218)
T ss_pred             eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcc---c--CHHHH
Confidence            567777 667654    4566655     8999999999999999999999999999999875543111   1  11122


Q ss_pred             eEEEEEEEecC
Q psy16868         76 NAYVEIVFDNT   86 (109)
Q Consensus        76 ~~~i~~~fq~~   86 (109)
                      +..++++||++
T Consensus        77 ~~~i~~~~q~~   87 (218)
T cd03266          77 RRRLGFVSDST   87 (218)
T ss_pred             HhhEEEecCCc
Confidence            45799999986

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.56  E-value=1.5e-15  Score=101.36  Aligned_cols=81  Identities=17%  Similarity=0.349  Sum_probs=56.8

Q ss_pred             EEEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          6 VIIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         6 i~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      |+++|+ ..|. +..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...... ........+..
T Consensus         2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~~~~~   80 (243)
T TIGR02315         2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKL-RGKKLRKLRRR   80 (243)
T ss_pred             eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhC-CHHHHHHHHhh
Confidence            567787 6776 555666666     889999999999999999999999999999987554311100 00000112456


Q ss_pred             EEEEEecCC
Q psy16868         79 VEIVFDNTD   87 (109)
Q Consensus        79 i~~~fq~~~   87 (109)
                      ++++||++.
T Consensus        81 i~~v~q~~~   89 (243)
T TIGR02315        81 IGMIFQHYN   89 (243)
T ss_pred             eEEEcCCCc
Confidence            899998753

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.56  E-value=1e-15  Score=99.84  Aligned_cols=78  Identities=15%  Similarity=0.324  Sum_probs=52.4

Q ss_pred             ece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEE
Q psy16868          9 HGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIV   82 (109)
Q Consensus         9 ~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   82 (109)
                      +|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...............+..++++
T Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~   81 (206)
T TIGR03608         2 KNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYL   81 (206)
T ss_pred             cceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEE
Confidence            345 4565545566555     8999999999999999999999999999999875543110000000011124578999


Q ss_pred             EecC
Q psy16868         83 FDNT   86 (109)
Q Consensus        83 fq~~   86 (109)
                      +|++
T Consensus        82 ~q~~   85 (206)
T TIGR03608        82 FQNF   85 (206)
T ss_pred             ecch
Confidence            9875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>KOG0933|consensus

Probab=99.56  E-value=2e-15  Score=114.11  Aligned_cols=88  Identities=42%  Similarity=0.651  Sum_probs=75.9

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhcc-CcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSD-ESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+|+.|.+.+|++|..++++.+|++.+++|+|-||||||++|++||+++.- ....++ ....+++++......-.++.|
T Consensus         1 M~IkeiiLDGFKSYa~rTvI~~fDp~FNAITGlNGSGKSNILDsICFvLGI~nl~~VR-A~nlqeLIyk~GQAGiTkAsV   79 (1174)
T KOG0933|consen    1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDSICFVLGITNLSQVR-ASNLQELIYKNGQAGITKASV   79 (1174)
T ss_pred             CchhhhhhcchhcceeeeeccCCCcccchhhcCCCCCchHHHHHHHHHHccchHHHHH-HHHHHHHHHhcCcccceeEEE
Confidence            899999999999999999889999999999999999999999999999984 445566 555788888776666668999


Q ss_pred             EEEEecCCCC
Q psy16868         80 EIVFDNTDHR   89 (109)
Q Consensus        80 ~~~fq~~~~~   89 (109)
                      .++|++.+..
T Consensus        80 sVvFdNtdk~   89 (1174)
T KOG0933|consen   80 SVVFDNTDKA   89 (1174)
T ss_pred             EEEecCCCcc
Confidence            9999986543

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.56  E-value=2.7e-15  Score=98.09  Aligned_cols=74  Identities=14%  Similarity=0.213  Sum_probs=54.6

Q ss_pred             EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      +++|+ +.|.+..++++++     +++++|+||||||||||+++|+|++.+..|.+.+.+....   ..   ......++
T Consensus         2 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~---~~---~~~~~~i~   75 (208)
T cd03268           2 KTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQ---KN---IEALRRIG   75 (208)
T ss_pred             EEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCccc---ch---HHHHhhEE
Confidence            46676 5676555566555     8999999999999999999999999999999885543111   10   11245689


Q ss_pred             EEEecC
Q psy16868         81 IVFDNT   86 (109)
Q Consensus        81 ~~fq~~   86 (109)
                      ++||++
T Consensus        76 ~~~q~~   81 (208)
T cd03268          76 ALIEAP   81 (208)
T ss_pred             EecCCC
Confidence            999875

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.56  E-value=3e-15  Score=99.78  Aligned_cols=79  Identities=18%  Similarity=0.186  Sum_probs=54.1

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhh--ccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVL--SDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      |+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++  .+..|.+.+.+...   .........+.
T Consensus         1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~---~~~~~~~~~~~   77 (243)
T TIGR01978         1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDL---LELEPDERARA   77 (243)
T ss_pred             CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEec---CCCCHHHhhcc
Confidence            356677 6676655666665     8899999999999999999999995  68889887554211   11000011133


Q ss_pred             EEEEEEecCC
Q psy16868         78 YVEIVFDNTD   87 (109)
Q Consensus        78 ~i~~~fq~~~   87 (109)
                      .+++++|++.
T Consensus        78 ~i~~v~q~~~   87 (243)
T TIGR01978        78 GLFLAFQYPE   87 (243)
T ss_pred             ceEeeecccc
Confidence            4888898864

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.56  E-value=2e-15  Score=99.06  Aligned_cols=81  Identities=16%  Similarity=0.285  Sum_probs=55.7

Q ss_pred             EEEece-eec-CCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          6 VIIHGF-KSY-KEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         6 i~i~n~-~~~-~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      |+++|+ +.| .+..++++++     |++++|+||||||||||+++|+|++.+..|.+.+.+....-. ........+..
T Consensus         2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~~~~~   80 (214)
T TIGR02673         2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRL-RGRQLPLLRRR   80 (214)
T ss_pred             EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccC-CHHHHHHHHhh
Confidence            567777 667 3445566655     889999999999999999999999999999987544211000 00000112456


Q ss_pred             EEEEEecCC
Q psy16868         79 VEIVFDNTD   87 (109)
Q Consensus        79 i~~~fq~~~   87 (109)
                      +++++|++.
T Consensus        81 i~~~~q~~~   89 (214)
T TIGR02673        81 IGVVFQDFR   89 (214)
T ss_pred             eEEEecChh
Confidence            899998863

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.56  E-value=3.3e-15  Score=100.82  Aligned_cols=73  Identities=23%  Similarity=0.406  Sum_probs=56.6

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      .|+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.+..|.+.+.+..   +      ...+..
T Consensus        12 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~---~------~~~~~~   82 (257)
T PRK11247         12 PLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAP---L------AEARED   82 (257)
T ss_pred             cEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEE---H------HHhhCc
Confidence            4788898 7787666666665     88999999999999999999999999999988743321   0      112356


Q ss_pred             EEEEEecC
Q psy16868         79 VEIVFDNT   86 (109)
Q Consensus        79 i~~~fq~~   86 (109)
                      ++++||++
T Consensus        83 i~~v~q~~   90 (257)
T PRK11247         83 TRLMFQDA   90 (257)
T ss_pred             eEEEecCc
Confidence            89999985

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.56  E-value=2.2e-15  Score=100.31  Aligned_cols=80  Identities=16%  Similarity=0.334  Sum_probs=55.4

Q ss_pred             EEece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          7 IIHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         7 ~i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      +++|+ +.|.+ ..++++++     |++++|+||||||||||+++|+|++.+..|.+.+.+...... ........+..+
T Consensus         2 ~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~~~~~i   80 (241)
T cd03256           2 EVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKL-KGKALRQLRRQI   80 (241)
T ss_pred             EEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEecccc-CHhHHHHHHhcc
Confidence            56677 56765 55666665     899999999999999999999999999999887554211000 000011124578


Q ss_pred             EEEEecCC
Q psy16868         80 EIVFDNTD   87 (109)
Q Consensus        80 ~~~fq~~~   87 (109)
                      ++++|++.
T Consensus        81 ~~~~q~~~   88 (241)
T cd03256          81 GMIFQQFN   88 (241)
T ss_pred             EEEcccCc
Confidence            99998763

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0996|consensus

Probab=99.56  E-value=2.8e-15  Score=114.60  Aligned_cols=85  Identities=33%  Similarity=0.604  Sum_probs=70.1

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCce-eeEEE
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRV-VNAYV   79 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i   79 (109)
                      |+|..|.+.||++|...+++.+|+..+++||||||||||+++++|.+++.-..+.++ ......+++.....+. ..+.|
T Consensus        84 L~I~~i~~~NFKSYaG~~ilGPFHksFtaIvGPNGSGKSNVIDsmLFVFGfRA~kiR-~~klS~LIh~S~~~~~l~SCsV  162 (1293)
T KOG0996|consen   84 LMITEIVVENFKSYAGKQILGPFHKSFTAIVGPNGSGKSNVIDSMLFVFGFRASKIR-SKKLSALIHKSDGHPNLQSCSV  162 (1293)
T ss_pred             eeehhhhhhhhhhhcCceeecCCCCCceeeECCCCCCchHHHHHHHHHhhhhHhHHh-HHHHHHHHhccCCCCCCcceeE
Confidence            467889999999999999899999999999999999999999999999987777777 4546667765544333 34889


Q ss_pred             EEEEecC
Q psy16868         80 EIVFDNT   86 (109)
Q Consensus        80 ~~~fq~~   86 (109)
                      ++-||--
T Consensus       163 ~vhFq~i  169 (1293)
T KOG0996|consen  163 EVHFQKI  169 (1293)
T ss_pred             EEeeeee
Confidence            9888864

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.56  E-value=2.7e-15  Score=102.14  Aligned_cols=81  Identities=16%  Similarity=0.236  Sum_probs=55.8

Q ss_pred             EEEece-eecCC-----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCce
Q psy16868          6 VIIHGF-KSYKE-----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRV   74 (109)
Q Consensus         6 i~i~n~-~~~~~-----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   74 (109)
                      |+++|+ +.|..     ..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+..............
T Consensus         3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (280)
T PRK13649          3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ   82 (280)
T ss_pred             EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence            667787 67753     23465555     88999999999999999999999999999998755431110000011112


Q ss_pred             eeEEEEEEEecC
Q psy16868         75 VNAYVEIVFDNT   86 (109)
Q Consensus        75 ~~~~i~~~fq~~   86 (109)
                      .+..|++++|++
T Consensus        83 ~~~~i~~~~q~~   94 (280)
T PRK13649         83 IRKKVGLVFQFP   94 (280)
T ss_pred             HHhheEEEeeCh
Confidence            245699999986

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.56  E-value=1.8e-15  Score=99.21  Aligned_cols=71  Identities=25%  Similarity=0.287  Sum_probs=52.8

Q ss_pred             Eece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEE
Q psy16868          8 IHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEI   81 (109)
Q Consensus         8 i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   81 (109)
                      ++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+....         ..+..+++
T Consensus         2 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~---------~~~~~i~~   72 (213)
T cd03235           2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE---------KERKRIGY   72 (213)
T ss_pred             cccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH---------HHHhheEE
Confidence            4455 4565544565555     8899999999999999999999999999999875543111         12456899


Q ss_pred             EEecCC
Q psy16868         82 VFDNTD   87 (109)
Q Consensus        82 ~fq~~~   87 (109)
                      ++|++.
T Consensus        73 v~q~~~   78 (213)
T cd03235          73 VPQRRS   78 (213)
T ss_pred             eccccc
Confidence            999864

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.56  E-value=3.5e-15  Score=101.57  Aligned_cols=78  Identities=26%  Similarity=0.389  Sum_probs=58.1

Q ss_pred             EEEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          6 VIIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         6 i~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      ++++|+ +.|. ...++++++     |++++|+|+||||||||+++|+|++.|..|.+.+.+...    ...........
T Consensus         4 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~----~~~~~~~~~~~   79 (277)
T PRK13652          4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPI----TKENIREVRKF   79 (277)
T ss_pred             EEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC----CcCCHHHHHhh
Confidence            778888 7784 334566665     899999999999999999999999999999988554311    11111223467


Q ss_pred             EEEEEecCC
Q psy16868         79 VEIVFDNTD   87 (109)
Q Consensus        79 i~~~fq~~~   87 (109)
                      ++++||++.
T Consensus        80 i~~v~q~~~   88 (277)
T PRK13652         80 VGLVFQNPD   88 (277)
T ss_pred             eEEEecCcc
Confidence            999999874

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.56  E-value=3.1e-15  Score=101.15  Aligned_cols=80  Identities=15%  Similarity=0.254  Sum_probs=59.6

Q ss_pred             eEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          4 KQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         4 ~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      ..|+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.+..|.+.+.+...   . .........
T Consensus         6 ~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~---~-~~~~~~~~~   81 (265)
T PRK10253          6 ARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHI---Q-HYASKEVAR   81 (265)
T ss_pred             cEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEh---h-hCCHHHHhh
Confidence            35788898 7787766677776     899999999999999999999999999999887554211   1 111111234


Q ss_pred             EEEEEEecCC
Q psy16868         78 YVEIVFDNTD   87 (109)
Q Consensus        78 ~i~~~fq~~~   87 (109)
                      .|+++||++.
T Consensus        82 ~i~~v~q~~~   91 (265)
T PRK10253         82 RIGLLAQNAT   91 (265)
T ss_pred             heEEeeccCc
Confidence            6899999864

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.56  E-value=3.7e-15  Score=100.49  Aligned_cols=79  Identities=16%  Similarity=0.216  Sum_probs=57.8

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|+ +.|.+..++++++     |++++|+|+||||||||+++|+|++.+..|.+.+.+...   . ..........+
T Consensus         3 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~---~-~~~~~~~~~~i   78 (258)
T PRK13548          3 LEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPL---A-DWSPAELARRR   78 (258)
T ss_pred             EEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEc---c-cCCHHHhhhhe
Confidence            677888 6777666676665     889999999999999999999999999999987544211   1 11111123568


Q ss_pred             EEEEecCCC
Q psy16868         80 EIVFDNTDH   88 (109)
Q Consensus        80 ~~~fq~~~~   88 (109)
                      +++||++..
T Consensus        79 ~~~~q~~~~   87 (258)
T PRK13548         79 AVLPQHSSL   87 (258)
T ss_pred             EEEccCCcC
Confidence            999998643

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.56  E-value=2.8e-15  Score=103.09  Aligned_cols=77  Identities=21%  Similarity=0.300  Sum_probs=59.3

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      ++++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+..  . ..  .....+..+
T Consensus         3 l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~--~-~~--~~~~~~~~i   77 (301)
T TIGR03522         3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGED--V-LQ--NPKEVQRNI   77 (301)
T ss_pred             EEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE--c-cc--ChHHHHhce
Confidence            778888 7887776777766     88999999999999999999999999999998755421  1 11  111234679


Q ss_pred             EEEEecCC
Q psy16868         80 EIVFDNTD   87 (109)
Q Consensus        80 ~~~fq~~~   87 (109)
                      ++++|.+.
T Consensus        78 g~~~q~~~   85 (301)
T TIGR03522        78 GYLPEHNP   85 (301)
T ss_pred             EEecCCCC
Confidence            99999863

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.56  E-value=5.1e-15  Score=99.70  Aligned_cols=72  Identities=22%  Similarity=0.316  Sum_probs=54.3

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...   . .     ....+
T Consensus         2 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~---~-~-----~~~~~   72 (255)
T PRK11248          2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPV---E-G-----PGAER   72 (255)
T ss_pred             EEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC---C-C-----CCCcE
Confidence            567777 6676655566665     899999999999999999999999999999987544211   0 1     12347


Q ss_pred             EEEEecC
Q psy16868         80 EIVFDNT   86 (109)
Q Consensus        80 ~~~fq~~   86 (109)
                      +++||++
T Consensus        73 ~~v~q~~   79 (255)
T PRK11248         73 GVVFQNE   79 (255)
T ss_pred             EEEeCCC
Confidence            8999875

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.56  E-value=3.3e-15  Score=99.65  Aligned_cols=78  Identities=15%  Similarity=0.245  Sum_probs=56.3

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|+ +.|.+..++++++     |++++|+|+||||||||+++|+|++.|.+|.+.+.+...   .........+..+
T Consensus         3 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~---~~~~~~~~~~~~i   79 (242)
T TIGR03411         3 LYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDL---TGLPEHQIARAGI   79 (242)
T ss_pred             EEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeec---CCCCHHHHHhcCe
Confidence            678888 6776655666665     889999999999999999999999999999988554211   1100001113468


Q ss_pred             EEEEecC
Q psy16868         80 EIVFDNT   86 (109)
Q Consensus        80 ~~~fq~~   86 (109)
                      +++||++
T Consensus        80 ~~~~q~~   86 (242)
T TIGR03411        80 GRKFQKP   86 (242)
T ss_pred             eEecccc
Confidence            9999875

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.56  E-value=3.7e-15  Score=99.38  Aligned_cols=79  Identities=20%  Similarity=0.275  Sum_probs=56.7

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      ++++|+ +.|.+..++++++     |++++|+|+||||||||+++|+|++.+..|.+.+.+...  ..........+..+
T Consensus         2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~--~~~~~~~~~~~~~i   79 (240)
T PRK09493          2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKV--NDPKVDERLIRQEA   79 (240)
T ss_pred             EEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC--CcCChhHHHHhhce
Confidence            567777 6676655666665     899999999999999999999999999999988554311  10001111224579


Q ss_pred             EEEEecC
Q psy16868         80 EIVFDNT   86 (109)
Q Consensus        80 ~~~fq~~   86 (109)
                      ++++|++
T Consensus        80 ~~~~q~~   86 (240)
T PRK09493         80 GMVFQQF   86 (240)
T ss_pred             EEEeccc
Confidence            9999875

>PRK10908 cell division protein FtsE; Provisional

Probab=99.56  E-value=2.7e-15  Score=99.01  Aligned_cols=81  Identities=14%  Similarity=0.238  Sum_probs=56.6

Q ss_pred             EEEece-eec-CCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          6 VIIHGF-KSY-KEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         6 i~i~n~-~~~-~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      |+++|+ +.| ....++++++     +++++|+||||||||||+++|+|++.+..|.+.+.+....-. ........+..
T Consensus         2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~-~~~~~~~~~~~   80 (222)
T PRK10908          2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRL-KNREVPFLRRQ   80 (222)
T ss_pred             EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC-ChhHHHHHHhh
Confidence            567788 667 4455566665     899999999999999999999999999999987554311000 00001112457


Q ss_pred             EEEEEecCC
Q psy16868         79 VEIVFDNTD   87 (109)
Q Consensus        79 i~~~fq~~~   87 (109)
                      +++++|++.
T Consensus        81 i~~~~q~~~   89 (222)
T PRK10908         81 IGMIFQDHH   89 (222)
T ss_pred             eEEEecCcc
Confidence            899999863

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.55  E-value=3.9e-15  Score=95.37  Aligned_cols=79  Identities=19%  Similarity=0.246  Sum_probs=54.6

Q ss_pred             EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      +++|+ ..|.+..++++++     +++++|+||||||||||+++|+|++.+..|.+.+.+....  ............++
T Consensus         2 ~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~--~~~~~~~~~~~~i~   79 (178)
T cd03229           2 ELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLT--DLEDELPPLRRRIG   79 (178)
T ss_pred             EEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc--ccchhHHHHhhcEE
Confidence            45666 4565555565554     8999999999999999999999999999999875543111  00000112346799


Q ss_pred             EEEecCC
Q psy16868         81 IVFDNTD   87 (109)
Q Consensus        81 ~~fq~~~   87 (109)
                      +++|++.
T Consensus        80 ~~~q~~~   86 (178)
T cd03229          80 MVFQDFA   86 (178)
T ss_pred             EEecCCc
Confidence            9998764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.55  E-value=3.8e-15  Score=99.46  Aligned_cols=76  Identities=17%  Similarity=0.253  Sum_probs=54.4

Q ss_pred             EEece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          7 IIHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         7 ~i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      +++|+ ..|.+ ..++++++     |++++|+||||||||||+++|+|++.+..|.+.+.+...   . .......+..+
T Consensus         2 ~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~---~-~~~~~~~~~~i   77 (242)
T cd03295           2 EFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDI---R-EQDPVELRRKI   77 (242)
T ss_pred             EEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEc---C-cCChHHhhcce
Confidence            45666 56665 45565555     899999999999999999999999999999987554311   1 11111224578


Q ss_pred             EEEEecC
Q psy16868         80 EIVFDNT   86 (109)
Q Consensus        80 ~~~fq~~   86 (109)
                      ++++|++
T Consensus        78 ~~~~q~~   84 (242)
T cd03295          78 GYVIQQI   84 (242)
T ss_pred             EEEccCc
Confidence            9999975

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.55  E-value=4e-15  Score=99.02  Aligned_cols=77  Identities=16%  Similarity=0.297  Sum_probs=56.1

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      ++++|+ ..|.+..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...   . .... .....+
T Consensus         2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i---~-~~~~-~~~~~i   76 (236)
T TIGR03864         2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDL---R-RAPR-AALARL   76 (236)
T ss_pred             EEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEc---c-cCCh-hhhhhE
Confidence            567777 6676655666665     899999999999999999999999999999987554211   1 1111 112468


Q ss_pred             EEEEecCC
Q psy16868         80 EIVFDNTD   87 (109)
Q Consensus        80 ~~~fq~~~   87 (109)
                      ++++|++.
T Consensus        77 ~~~~q~~~   84 (236)
T TIGR03864        77 GVVFQQPT   84 (236)
T ss_pred             EEeCCCCC
Confidence            99999753

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.55  E-value=3.3e-15  Score=100.49  Aligned_cols=78  Identities=14%  Similarity=0.256  Sum_probs=57.4

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      ++++|+ +.|.+..++++++     |++++|+|+||||||||+++|+|++.+..|.+.+.+....   . .........+
T Consensus         3 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~---~-~~~~~~~~~i   78 (255)
T PRK11231          3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPIS---M-LSSRQLARRL   78 (255)
T ss_pred             EEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhH---H-CCHHHHhhhe
Confidence            678888 7787766677665     8899999999999999999999999999998875542111   1 0111123468


Q ss_pred             EEEEecCC
Q psy16868         80 EIVFDNTD   87 (109)
Q Consensus        80 ~~~fq~~~   87 (109)
                      +++||++.
T Consensus        79 ~~~~q~~~   86 (255)
T PRK11231         79 ALLPQHHL   86 (255)
T ss_pred             EEecccCC
Confidence            99999864

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.55  E-value=3.6e-15  Score=100.40  Aligned_cols=87  Identities=22%  Similarity=0.370  Sum_probs=61.4

Q ss_pred             CeeeEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhh-------
Q psy16868          1 MYIKQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLH-------   67 (109)
Q Consensus         1 M~i~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~-------   67 (109)
                      |.-..|+++|+ ..|.+..++++++     |++++|+|+||||||||+++|+|++.+..|.+.+.+.......       
T Consensus         1 ~~~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (257)
T PRK10619          1 MSENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK   80 (257)
T ss_pred             CCCccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence            34456889999 7787666666665     8999999999999999999999999999998875553111000       


Q ss_pred             --cCCCCceeeEEEEEEEecCC
Q psy16868         68 --EGTGPRVVNAYVEIVFDNTD   87 (109)
Q Consensus        68 --~~~~~~~~~~~i~~~fq~~~   87 (109)
                        ........+..|++++|++.
T Consensus        81 ~~~~~~~~~~~~~i~~v~q~~~  102 (257)
T PRK10619         81 VADKNQLRLLRTRLTMVFQHFN  102 (257)
T ss_pred             cccchHHHHHhhceEEEecCcc
Confidence              00001122457999999863

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.55  E-value=6.5e-15  Score=98.88  Aligned_cols=84  Identities=19%  Similarity=0.258  Sum_probs=59.7

Q ss_pred             CeeeEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC-----cccccccchhhhhhhcC
Q psy16868          1 MYIKQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE-----STSLRHSDSRQALLHEG   69 (109)
Q Consensus         1 M~i~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~-----~~~~~~~~~~~~~~~~~   69 (109)
                      |+. .|+++|+ +.|....++++++     |++++|+||||||||||+++|+|++.+.     .|.+.+.+...  ....
T Consensus         1 ~~~-~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i--~~~~   77 (253)
T PRK14267          1 MKF-AIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNI--YSPD   77 (253)
T ss_pred             Ccc-eEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEc--cccc
Confidence            555 5889999 7787666677766     8999999999999999999999999863     78887554311  0000


Q ss_pred             CCCceeeEEEEEEEecCC
Q psy16868         70 TGPRVVNAYVEIVFDNTD   87 (109)
Q Consensus        70 ~~~~~~~~~i~~~fq~~~   87 (109)
                      ......+..|+++||++.
T Consensus        78 ~~~~~~~~~i~~~~q~~~   95 (253)
T PRK14267         78 VDPIEVRREVGMVFQYPN   95 (253)
T ss_pred             cChHHHhhceeEEecCCc
Confidence            111122457999999863

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.55  E-value=2.4e-15  Score=108.45  Aligned_cols=80  Identities=16%  Similarity=0.244  Sum_probs=65.4

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      -++++|. ++|...+++++++     |++++|+|.||||||||++.|+|.+.|+.|.+.++++.   .....+.......
T Consensus         8 ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~---~~~~sp~~A~~~G   84 (500)
T COG1129           8 LLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKP---VAFSSPRDALAAG   84 (500)
T ss_pred             eeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEE---ccCCCHHHHHhCC
Confidence            4789999 9999988888777     89999999999999999999999999999999866542   2222333344678


Q ss_pred             EEEEEecCC
Q psy16868         79 VEIVFDNTD   87 (109)
Q Consensus        79 i~~~fq~~~   87 (109)
                      |.+++|+..
T Consensus        85 I~~V~QEl~   93 (500)
T COG1129          85 IATVHQELS   93 (500)
T ss_pred             cEEEeechh
Confidence            999999864

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.55  E-value=4.3e-15  Score=99.15  Aligned_cols=82  Identities=17%  Similarity=0.290  Sum_probs=58.3

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhh--cCCCCceeeE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLH--EGTGPRVVNA   77 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~   77 (109)
                      |+++|+ ..|.+..++++++     |++++|+||||||||||+++|+|++.+..|.+.+.+.......  ........+.
T Consensus         3 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~   82 (242)
T PRK11124          3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRR   82 (242)
T ss_pred             EEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHh
Confidence            678888 6787666677666     8999999999999999999999999999999875553110000  0000111245


Q ss_pred             EEEEEEecCC
Q psy16868         78 YVEIVFDNTD   87 (109)
Q Consensus        78 ~i~~~fq~~~   87 (109)
                      .|++++|++.
T Consensus        83 ~i~~~~q~~~   92 (242)
T PRK11124         83 NVGMVFQQYN   92 (242)
T ss_pred             heEEEecCcc
Confidence            6899999763

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.55  E-value=3.8e-15  Score=100.96  Aligned_cols=81  Identities=11%  Similarity=0.218  Sum_probs=57.4

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      -|+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+....-. ........+..
T Consensus         7 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~-~~~~~~~~~~~   85 (269)
T PRK11831          7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAM-SRSRLYTVRKR   85 (269)
T ss_pred             eEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccc-ChhhHHHHhhc
Confidence            3788888 6787665566665     889999999999999999999999999999987554211000 00001112356


Q ss_pred             EEEEEecC
Q psy16868         79 VEIVFDNT   86 (109)
Q Consensus        79 i~~~fq~~   86 (109)
                      ++++||++
T Consensus        86 i~~v~q~~   93 (269)
T PRK11831         86 MSMLFQSG   93 (269)
T ss_pred             EEEEeccc
Confidence            89999985

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.55  E-value=4.1e-14  Score=96.31  Aligned_cols=70  Identities=29%  Similarity=0.485  Sum_probs=53.2

Q ss_pred             eeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEE
Q psy16868          3 IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIV   82 (109)
Q Consensus         3 i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   82 (109)
                      |.+|+++||++|++.. + +|++++++|+|||||||||+++||++++.....        .+++..+..    ...|...
T Consensus         1 l~~l~i~nf~~~~~~~-i-~~~~~~~~i~G~nGsGKS~il~ai~~~~~~~~~--------~~~~~~~~~----~~~v~~~   66 (276)
T cd03241           1 LLELSIKNFALIEELE-L-DFEEGLTVLTGETGAGKSILLDALSLLLGGRAS--------ADLIRSGAE----KAVVEGV   66 (276)
T ss_pred             CcEEEEeCccceeeeE-E-EeCCCeEEEEcCCCCCHHHHHHHHHHHhcCCCh--------HHHhhCCCC----eEEEEEE
Confidence            4689999999997765 6 788899999999999999999999999876421        223444433    4557777


Q ss_pred             EecC
Q psy16868         83 FDNT   86 (109)
Q Consensus        83 fq~~   86 (109)
                      |...
T Consensus        67 ~~~~   70 (276)
T cd03241          67 FDIS   70 (276)
T ss_pred             EecC
Confidence            7654

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.55  E-value=2e-15  Score=98.79  Aligned_cols=76  Identities=24%  Similarity=0.375  Sum_probs=52.9

Q ss_pred             Eece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          8 IHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         8 i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      ++|+ +.|..  ..++++++     |++++|+||||||||||+++|+|++.+..|.+.+.+..   +. ..+....+..|
T Consensus         2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~---~~-~~~~~~~~~~i   77 (211)
T cd03225           2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKD---LT-KLSLKELRRKV   77 (211)
T ss_pred             ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE---cc-cCCHHHHHhhc
Confidence            3455 45554  44455554     88999999999999999999999999999998755421   11 11111224568


Q ss_pred             EEEEecCC
Q psy16868         80 EIVFDNTD   87 (109)
Q Consensus        80 ~~~fq~~~   87 (109)
                      ++++|++.
T Consensus        78 ~~~~q~~~   85 (211)
T cd03225          78 GLVFQNPD   85 (211)
T ss_pred             eEEecChh
Confidence            99999863

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.55  E-value=4.9e-15  Score=99.21  Aligned_cols=80  Identities=14%  Similarity=0.240  Sum_probs=56.2

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC-----cccccccchhhhhhhcCCCCce
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE-----STSLRHSDSRQALLHEGTGPRV   74 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~   74 (109)
                      ++++|+ +.|.+..++++++     |++++|+|+||||||||+++|+|++.|.     .|.+.+.+...  .........
T Consensus         2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~--~~~~~~~~~   79 (247)
T TIGR00972         2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDI--YDKKIDVVE   79 (247)
T ss_pred             EEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEc--cccccchHH
Confidence            567777 6676655566655     8999999999999999999999999987     89887554311  100011112


Q ss_pred             eeEEEEEEEecCC
Q psy16868         75 VNAYVEIVFDNTD   87 (109)
Q Consensus        75 ~~~~i~~~fq~~~   87 (109)
                      .+..|+++||++.
T Consensus        80 ~~~~i~~v~q~~~   92 (247)
T TIGR00972        80 LRRRVGMVFQKPN   92 (247)
T ss_pred             HHhheEEEecCcc
Confidence            2457999999853

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.55  E-value=6.4e-15  Score=99.79  Aligned_cols=78  Identities=19%  Similarity=0.332  Sum_probs=56.7

Q ss_pred             EEEece-eecCC---------CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCC
Q psy16868          6 VIIHGF-KSYKE---------QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGT   70 (109)
Q Consensus         6 i~i~n~-~~~~~---------~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~   70 (109)
                      |+++|+ +.|..         ..++++++     +++++|+||||||||||+++|+|++.|..|.+.+.+...   .. .
T Consensus         5 l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~---~~-~   80 (267)
T PRK15112          5 LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL---HF-G   80 (267)
T ss_pred             EEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEEC---CC-C
Confidence            778888 67742         23566665     899999999999999999999999999999987554311   11 1


Q ss_pred             CCceeeEEEEEEEecCC
Q psy16868         71 GPRVVNAYVEIVFDNTD   87 (109)
Q Consensus        71 ~~~~~~~~i~~~fq~~~   87 (109)
                      ........|+++||++.
T Consensus        81 ~~~~~~~~i~~v~q~~~   97 (267)
T PRK15112         81 DYSYRSQRIRMIFQDPS   97 (267)
T ss_pred             chhhHhccEEEEecCch
Confidence            11122356999999864

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.55  E-value=4.1e-15  Score=100.58  Aligned_cols=79  Identities=13%  Similarity=0.163  Sum_probs=58.6

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      .|+++|+ ..|.+..++++++     |++++|+|+||||||||+++|+|++.+..|.+.+.+...   .. ......+..
T Consensus        11 ~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~---~~-~~~~~~~~~   86 (265)
T PRK10575         11 TFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPL---ES-WSSKAFARK   86 (265)
T ss_pred             eEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEeh---hh-CCHHHHhhh
Confidence            4788888 6787666677666     899999999999999999999999999999987554311   11 111122456


Q ss_pred             EEEEEecCC
Q psy16868         79 VEIVFDNTD   87 (109)
Q Consensus        79 i~~~fq~~~   87 (109)
                      ++++||++.
T Consensus        87 i~~v~q~~~   95 (265)
T PRK10575         87 VAYLPQQLP   95 (265)
T ss_pred             eEEeccCCC
Confidence            899998753

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.55  E-value=5.2e-15  Score=100.84  Aligned_cols=81  Identities=19%  Similarity=0.276  Sum_probs=58.9

Q ss_pred             EEEEece-eecCC------CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCC
Q psy16868          5 QVIIHGF-KSYKE------QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGP   72 (109)
Q Consensus         5 ~i~i~n~-~~~~~------~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~   72 (109)
                      -++++|+ +.|.+      ..++++++     |++++|+|+||||||||+++|+|++.+..|.+.+.+..   +......
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~---i~~~~~~   80 (280)
T PRK13633          4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLD---TSDEENL   80 (280)
T ss_pred             eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEe---ccccccH
Confidence            3788888 77853      34566665     88999999999999999999999999999998855431   1111111


Q ss_pred             ceeeEEEEEEEecCCC
Q psy16868         73 RVVNAYVEIVFDNTDH   88 (109)
Q Consensus        73 ~~~~~~i~~~fq~~~~   88 (109)
                      ...+..++++||++..
T Consensus        81 ~~~~~~i~~v~q~~~~   96 (280)
T PRK13633         81 WDIRNKAGMVFQNPDN   96 (280)
T ss_pred             HHHhhheEEEecChhh
Confidence            1234679999998743

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.55  E-value=8.2e-15  Score=98.85  Aligned_cols=81  Identities=14%  Similarity=0.280  Sum_probs=58.0

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc-----cCcccccccchhhhhhhcCCCCc
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS-----DESTSLRHSDSRQALLHEGTGPR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~   73 (109)
                      .++++|+ ..|.+..++++++     |++++|+||||||||||+++|+|++.     |..|.+.+.+..  +........
T Consensus        13 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~--~~~~~~~~~   90 (260)
T PRK10744         13 KIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGEN--ILTPKQDIA   90 (260)
T ss_pred             eEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEE--ccccccchH
Confidence            5788898 6787666676665     89999999999999999999999986     367888755431  110111112


Q ss_pred             eeeEEEEEEEecCC
Q psy16868         74 VVNAYVEIVFDNTD   87 (109)
Q Consensus        74 ~~~~~i~~~fq~~~   87 (109)
                      ..+..|+++||++.
T Consensus        91 ~~~~~i~~~~q~~~  104 (260)
T PRK10744         91 LLRAKVGMVFQKPT  104 (260)
T ss_pred             HHhcceEEEecCCc
Confidence            23467999999863

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.55  E-value=8.1e-15  Score=98.35  Aligned_cols=84  Identities=15%  Similarity=0.250  Sum_probs=58.8

Q ss_pred             CeeeEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcC
Q psy16868          1 MYIKQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEG   69 (109)
Q Consensus         1 M~i~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~   69 (109)
                      |++ .++++|+ ..|.+..++++++     |++++|+|+||||||||+++|+|+..+     ..|.+.+.+...  ....
T Consensus         1 ~~~-~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i--~~~~   77 (251)
T PRK14270          1 MKI-KMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNI--YDKD   77 (251)
T ss_pred             Ccc-EEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEec--cccc
Confidence            444 4788898 6787666666665     899999999999999999999999874     578877544211  1011


Q ss_pred             CCCceeeEEEEEEEecCC
Q psy16868         70 TGPRVVNAYVEIVFDNTD   87 (109)
Q Consensus        70 ~~~~~~~~~i~~~fq~~~   87 (109)
                      ......+..++++||++.
T Consensus        78 ~~~~~~~~~i~~~~q~~~   95 (251)
T PRK14270         78 VDVVELRKRVGMVFQKPN   95 (251)
T ss_pred             ccHHHHHhheEEEecCCC
Confidence            111122457999999863

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.55  E-value=8.8e-16  Score=98.53  Aligned_cols=75  Identities=15%  Similarity=0.162  Sum_probs=57.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCCCCCceeEEEeecceee
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTDHRVPGFIRCRSTSVDL  103 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~~~~~~~~~~~~~~~~~  103 (109)
                      +...+|+|.||||||||.++|+|.+.|++|.+.+++...  .+.  +...+...|.|+||+|+..+.++.++.+.....
T Consensus        39 ~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L--~~~--Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~P  113 (267)
T COG4167          39 GQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPL--HFG--DYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFP  113 (267)
T ss_pred             CcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccc--ccc--chHhhhhheeeeecCCccccChhhhhhhHhcch
Confidence            788999999999999999999999999999988665321  111  122235679999999999998877766554433

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.54  E-value=3.9e-15  Score=99.93  Aligned_cols=82  Identities=20%  Similarity=0.167  Sum_probs=57.5

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhh-hcCCCCc----e
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALL-HEGTGPR----V   74 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~-~~~~~~~----~   74 (109)
                      |+++|+ +.|.+..++++++     |++++|+|+||||||||+++|+|++.+..|.+.+.+...... .......    .
T Consensus         4 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~   83 (253)
T TIGR02323         4 LQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRL   83 (253)
T ss_pred             EEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHh
Confidence            678888 6777655566665     899999999999999999999999999999987544210000 0011110    1


Q ss_pred             eeEEEEEEEecCC
Q psy16868         75 VNAYVEIVFDNTD   87 (109)
Q Consensus        75 ~~~~i~~~fq~~~   87 (109)
                      ....|++++|++.
T Consensus        84 ~~~~i~~~~q~~~   96 (253)
T TIGR02323        84 MRTEWGFVHQNPR   96 (253)
T ss_pred             hhcceEEEEeCcc
Confidence            1346899999864

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.54  E-value=5.9e-15  Score=96.08  Aligned_cols=76  Identities=14%  Similarity=0.173  Sum_probs=56.3

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|+..+..|.+.+.+...   ..  .....+..+
T Consensus         2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~---~~--~~~~~~~~i   76 (200)
T PRK13540          2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI---KK--DLCTYQKQL   76 (200)
T ss_pred             EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcc---cc--CHHHHHhhe
Confidence            567777 6676666676666     899999999999999999999999999999987554311   11  111224568


Q ss_pred             EEEEecC
Q psy16868         80 EIVFDNT   86 (109)
Q Consensus        80 ~~~fq~~   86 (109)
                      ++++|.+
T Consensus        77 ~~~~q~~   83 (200)
T PRK13540         77 CFVGHRS   83 (200)
T ss_pred             EEecccc
Confidence            8888864

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.54  E-value=2.6e-15  Score=104.45  Aligned_cols=83  Identities=24%  Similarity=0.285  Sum_probs=56.5

Q ss_pred             EEEece-eecC----CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc----cCcccccccchhhhhhhcCC-
Q psy16868          6 VIIHGF-KSYK----EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS----DESTSLRHSDSRQALLHEGT-   70 (109)
Q Consensus         6 i~i~n~-~~~~----~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~----~~~~~~~~~~~~~~~~~~~~-   70 (109)
                      |+++|+ +.|.    ...++++++     |++++|+|+||||||||+++|+|++.    +..|.+.+.+..  +..... 
T Consensus         4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~--i~~~~~~   81 (330)
T PRK15093          4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID--LLRLSPR   81 (330)
T ss_pred             EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE--CCcCCHH
Confidence            778888 6773    334566665     89999999999999999999999986    467877755431  110000 


Q ss_pred             C-CceeeEEEEEEEecCCCCC
Q psy16868         71 G-PRVVNAYVEIVFDNTDHRV   90 (109)
Q Consensus        71 ~-~~~~~~~i~~~fq~~~~~~   90 (109)
                      . .......|+++||++...+
T Consensus        82 ~~~~~~~~~i~~v~Q~~~~~l  102 (330)
T PRK15093         82 ERRKLVGHNVSMIFQEPQSCL  102 (330)
T ss_pred             HHHHHhCCCEEEEecCcchhc
Confidence            0 0011346999999986443

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.54  E-value=8.1e-15  Score=98.58  Aligned_cols=68  Identities=15%  Similarity=0.247  Sum_probs=54.8

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      -|+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+               ...
T Consensus         4 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~---------------~~~   68 (251)
T PRK09544          4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG---------------KLR   68 (251)
T ss_pred             EEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC---------------ccC
Confidence            4788998 7787666666655     899999999999999999999999999999876321               235


Q ss_pred             EEEEEecCC
Q psy16868         79 VEIVFDNTD   87 (109)
Q Consensus        79 i~~~fq~~~   87 (109)
                      ++++||++.
T Consensus        69 i~~v~q~~~   77 (251)
T PRK09544         69 IGYVPQKLY   77 (251)
T ss_pred             EEEeccccc
Confidence            888888753

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.54  E-value=3.2e-15  Score=104.51  Aligned_cols=81  Identities=15%  Similarity=0.235  Sum_probs=57.1

Q ss_pred             EEEece-eecC----CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868          6 VIIHGF-KSYK----EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV   75 (109)
Q Consensus         6 i~i~n~-~~~~----~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (109)
                      |+++|+ ++|.    ...++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+....-. ........
T Consensus         2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~-~~~~~~~~   80 (343)
T PRK11153          2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTAL-SEKELRKA   80 (343)
T ss_pred             EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcC-CHHHHHHH
Confidence            567888 6776    245566665     899999999999999999999999999999987554311000 00000112


Q ss_pred             eEEEEEEEecCC
Q psy16868         76 NAYVEIVFDNTD   87 (109)
Q Consensus        76 ~~~i~~~fq~~~   87 (109)
                      +..|+++||++.
T Consensus        81 ~~~ig~v~q~~~   92 (343)
T PRK11153         81 RRQIGMIFQHFN   92 (343)
T ss_pred             hcCEEEEeCCCc
Confidence            467999999864

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.54  E-value=5.4e-15  Score=100.92  Aligned_cols=84  Identities=18%  Similarity=0.288  Sum_probs=60.6

Q ss_pred             eeEEEEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868          3 IKQVIIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV   75 (109)
Q Consensus         3 i~~i~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (109)
                      -.-|+++|+ ..|. ...++++++     |++++|+|+||||||||+++|+|++.+..|.+.+.+....  .........
T Consensus         3 ~~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~--~~~~~~~~~   80 (283)
T PRK13636          3 DYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPID--YSRKGLMKL   80 (283)
T ss_pred             CceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECC--CCcchHHHH
Confidence            345788998 7785 344666665     8999999999999999999999999999999885553211  011111123


Q ss_pred             eEEEEEEEecCCC
Q psy16868         76 NAYVEIVFDNTDH   88 (109)
Q Consensus        76 ~~~i~~~fq~~~~   88 (109)
                      +..|+++||++..
T Consensus        81 ~~~ig~v~q~~~~   93 (283)
T PRK13636         81 RESVGMVFQDPDN   93 (283)
T ss_pred             HhhEEEEecCcch
Confidence            4679999998743

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.54  E-value=8.3e-15  Score=100.22  Aligned_cols=84  Identities=18%  Similarity=0.285  Sum_probs=58.8

Q ss_pred             eEEEEece-eecCCC-----eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhh-hhcCCC
Q psy16868          4 KQVIIHGF-KSYKEQ-----TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQAL-LHEGTG   71 (109)
Q Consensus         4 ~~i~i~n~-~~~~~~-----~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~-~~~~~~   71 (109)
                      ..|+++|+ +.|.+.     .++++++     |++++|+||||||||||+++|+|++.+..|.+.+.+..... ......
T Consensus         5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~   84 (289)
T PRK13645          5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE   84 (289)
T ss_pred             ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence            46888998 778653     2566665     88999999999999999999999999999998754421100 000001


Q ss_pred             CceeeEEEEEEEecCC
Q psy16868         72 PRVVNAYVEIVFDNTD   87 (109)
Q Consensus        72 ~~~~~~~i~~~fq~~~   87 (109)
                      ....+..|++++|++.
T Consensus        85 ~~~~~~~i~~v~q~~~  100 (289)
T PRK13645         85 VKRLRKEIGLVFQFPE  100 (289)
T ss_pred             HHHHhccEEEEEeCcc
Confidence            1122457999999863

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.54  E-value=3.4e-15  Score=101.73  Aligned_cols=79  Identities=23%  Similarity=0.292  Sum_probs=58.4

Q ss_pred             EEEEece-eecCC---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868          5 QVIIHGF-KSYKE---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV   75 (109)
Q Consensus         5 ~i~i~n~-~~~~~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (109)
                      .|+++|+ +.|..   ..++++++     |++++|+|+||||||||+++|+|++.|..|.+.+.+...    ........
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i----~~~~~~~~   79 (279)
T PRK13650          4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLL----TEENVWDI   79 (279)
T ss_pred             eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEC----CcCcHHHH
Confidence            4788888 77753   23566665     899999999999999999999999999999988555311    11111223


Q ss_pred             eEEEEEEEecCC
Q psy16868         76 NAYVEIVFDNTD   87 (109)
Q Consensus        76 ~~~i~~~fq~~~   87 (109)
                      +..++++||++.
T Consensus        80 ~~~i~~v~q~~~   91 (279)
T PRK13650         80 RHKIGMVFQNPD   91 (279)
T ss_pred             HhhceEEEcChH
Confidence            457999999874

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.54  E-value=4.8e-15  Score=99.56  Aligned_cols=79  Identities=14%  Similarity=0.249  Sum_probs=57.0

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      -++++|+ +.|.+..++.+++     |++++|+||||||||||+++|+|++.+..|.+.+.+..   +.........+..
T Consensus         5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~---~~~~~~~~~~~~~   81 (255)
T PRK11300          5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQH---IEGLPGHQIARMG   81 (255)
T ss_pred             eEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEE---CCCCCHHHHHhcC
Confidence            3778888 6787666676665     89999999999999999999999999999998755431   1110000111335


Q ss_pred             EEEEEecC
Q psy16868         79 VEIVFDNT   86 (109)
Q Consensus        79 i~~~fq~~   86 (109)
                      ++++||++
T Consensus        82 i~~~~q~~   89 (255)
T PRK11300         82 VVRTFQHV   89 (255)
T ss_pred             eEEeccCc
Confidence            78888875

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.54  E-value=5.5e-15  Score=98.10  Aligned_cols=80  Identities=16%  Similarity=0.236  Sum_probs=57.1

Q ss_pred             EEEece-eecCCC----eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcC-CCCce
Q psy16868          6 VIIHGF-KSYKEQ----TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEG-TGPRV   74 (109)
Q Consensus         6 i~i~n~-~~~~~~----~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~   74 (109)
                      |+++|+ +.|.+.    .++++++     |++++|+||||||||||+++|+|++.+..|.+.+.+...  .... .....
T Consensus         2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~--~~~~~~~~~~   79 (233)
T cd03258           2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDL--TLLSGKELRK   79 (233)
T ss_pred             eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEc--ccCCHHHHHH
Confidence            567888 677654    5666665     899999999999999999999999999999987554311  1000 00011


Q ss_pred             eeEEEEEEEecCC
Q psy16868         75 VNAYVEIVFDNTD   87 (109)
Q Consensus        75 ~~~~i~~~fq~~~   87 (109)
                      .+..|++++|++.
T Consensus        80 ~~~~i~~~~q~~~   92 (233)
T cd03258          80 ARRRIGMIFQHFN   92 (233)
T ss_pred             HHhheEEEccCcc
Confidence            2456899998863

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.54  E-value=9.8e-15  Score=97.86  Aligned_cols=79  Identities=16%  Similarity=0.249  Sum_probs=57.7

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCCc
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGPR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~   73 (109)
                      .++++|+ ..|.+..++++++     |++++|+||||||||||+++|+|++.+     ..|.+.+.+...   . .....
T Consensus         3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i---~-~~~~~   78 (250)
T PRK14247          3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDI---F-KMDVI   78 (250)
T ss_pred             eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEEC---C-cCCHH
Confidence            4788888 6787666666665     889999999999999999999999874     578877554311   1 11112


Q ss_pred             eeeEEEEEEEecCC
Q psy16868         74 VVNAYVEIVFDNTD   87 (109)
Q Consensus        74 ~~~~~i~~~fq~~~   87 (109)
                      ..+..|+++||++.
T Consensus        79 ~~~~~i~~v~q~~~   92 (250)
T PRK14247         79 ELRRRVQMVFQIPN   92 (250)
T ss_pred             HHhccEEEEeccCc
Confidence            23467999999864

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.54  E-value=1.2e-14  Score=94.75  Aligned_cols=63  Identities=19%  Similarity=0.202  Sum_probs=49.7

Q ss_pred             EEece-eecCCC-----eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868          7 IIHGF-KSYKEQ-----TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV   75 (109)
Q Consensus         7 ~i~n~-~~~~~~-----~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (109)
                      +++|+ +.|.+.     .++++++     |++++|+||||||||||+++|+|+..+..|.+.+.+               
T Consensus         2 ~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g---------------   66 (204)
T cd03250           2 SVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG---------------   66 (204)
T ss_pred             EEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC---------------
Confidence            46666 566543     4566665     899999999999999999999999999999876332               


Q ss_pred             eEEEEEEEecC
Q psy16868         76 NAYVEIVFDNT   86 (109)
Q Consensus        76 ~~~i~~~fq~~   86 (109)
                        .|++++|++
T Consensus        67 --~i~~~~q~~   75 (204)
T cd03250          67 --SIAYVSQEP   75 (204)
T ss_pred             --EEEEEecCc
Confidence              478888775

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.54  E-value=4e-15  Score=108.54  Aligned_cols=81  Identities=12%  Similarity=0.251  Sum_probs=59.2

Q ss_pred             eEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          4 KQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         4 ~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      .-|+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+..   +.........+.
T Consensus         4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~---i~~~~~~~~~~~   80 (510)
T PRK09700          4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNIN---YNKLDHKLAAQL   80 (510)
T ss_pred             ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEE---CCCCCHHHHHHC
Confidence            34889999 7887766677666     88999999999999999999999999999998755421   111000001124


Q ss_pred             EEEEEEecCC
Q psy16868         78 YVEIVFDNTD   87 (109)
Q Consensus        78 ~i~~~fq~~~   87 (109)
                      .|+++||++.
T Consensus        81 ~i~~v~q~~~   90 (510)
T PRK09700         81 GIGIIYQELS   90 (510)
T ss_pred             CeEEEeeccc
Confidence            6999999853

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.54  E-value=1e-14  Score=98.74  Aligned_cols=81  Identities=17%  Similarity=0.242  Sum_probs=58.1

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCCc
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGPR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~   73 (109)
                      .|+++|+ +.|.+..++++++     |++++|+|+||||||||+++|+|++.+     ..|.+.+.+...  ........
T Consensus        19 ~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i--~~~~~~~~   96 (267)
T PRK14235         19 KMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDI--YDPRLDVV   96 (267)
T ss_pred             eEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEC--cccccchH
Confidence            5788898 7787666666665     899999999999999999999999874     678887554311  10001111


Q ss_pred             eeeEEEEEEEecCC
Q psy16868         74 VVNAYVEIVFDNTD   87 (109)
Q Consensus        74 ~~~~~i~~~fq~~~   87 (109)
                      ..+..++++||++.
T Consensus        97 ~~~~~i~~v~q~~~  110 (267)
T PRK14235         97 ELRARVGMVFQKPN  110 (267)
T ss_pred             HHhhceEEEecCCC
Confidence            23467999999863

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.54  E-value=4.4e-15  Score=97.27  Aligned_cols=76  Identities=12%  Similarity=0.204  Sum_probs=53.4

Q ss_pred             EEece-eecCCCeeEecCC----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEE
Q psy16868          7 IIHGF-KSYKEQTVVEPFD----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEI   81 (109)
Q Consensus         7 ~i~n~-~~~~~~~~l~~~~----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   81 (109)
                      +++|+ +.|.+..++++++    .++++|+||||||||||+++|+|++.+..|.+.+.+...   . ... ...+..+++
T Consensus         2 ~~~~~~~~~~~~~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~---~-~~~-~~~~~~i~~   76 (211)
T cd03264           2 QLENLTKRYGKKRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDV---L-KQP-QKLRRRIGY   76 (211)
T ss_pred             EEEEEEEEECCEEEEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCcc---c-cch-HHHHhheEE
Confidence            45666 5565545555554    339999999999999999999999999999987554311   1 111 122467899


Q ss_pred             EEecCC
Q psy16868         82 VFDNTD   87 (109)
Q Consensus        82 ~fq~~~   87 (109)
                      ++|++.
T Consensus        77 ~~q~~~   82 (211)
T cd03264          77 LPQEFG   82 (211)
T ss_pred             ecCCCc
Confidence            999864

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.54  E-value=2.4e-15  Score=98.13  Aligned_cols=85  Identities=16%  Similarity=0.194  Sum_probs=59.3

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+.+|+ .+...+.++++++     |++++|+||||+||||||++|+|-+.|+.|.+.+++.    ..+..........-
T Consensus         2 i~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~----~l~~~~~~~lA~~r   77 (259)
T COG4559           2 IRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGV----PLNSWPPEELARHR   77 (259)
T ss_pred             eeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCc----ChhhCCHHHHHHHh
Confidence            566676 5556666566555     8999999999999999999999999999999875542    22222222223345


Q ss_pred             EEEEecCCCCCceeE
Q psy16868         80 EIVFDNTDHRVPGFI   94 (109)
Q Consensus        80 ~~~fq~~~~~~~~~~   94 (109)
                      ++++|+..-.|++.+
T Consensus        78 aVlpQ~s~laFpFtv   92 (259)
T COG4559          78 AVLPQNSSLAFPFTV   92 (259)
T ss_pred             hhcccCcccccceEH
Confidence            667777766666543

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.54  E-value=4.9e-15  Score=94.52  Aligned_cols=76  Identities=18%  Similarity=0.206  Sum_probs=53.2

Q ss_pred             EEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          7 IIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         7 ~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      +++|+ ..|.+  ..++++++     +++++|+||||||||||+++|+|++.+..|.+.+.+...    ........+..
T Consensus         2 ~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~----~~~~~~~~~~~   77 (173)
T cd03246           2 EVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADI----SQWDPNELGDH   77 (173)
T ss_pred             EEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEc----ccCCHHHHHhh
Confidence            45666 55653  23455544     889999999999999999999999999999987554211    11111122457


Q ss_pred             EEEEEecC
Q psy16868         79 VEIVFDNT   86 (109)
Q Consensus        79 i~~~fq~~   86 (109)
                      ++++||++
T Consensus        78 i~~~~q~~   85 (173)
T cd03246          78 VGYLPQDD   85 (173)
T ss_pred             eEEECCCC
Confidence            89999876

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.54  E-value=4.2e-15  Score=108.24  Aligned_cols=79  Identities=16%  Similarity=0.217  Sum_probs=58.3

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      -|+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...   .........+..
T Consensus         4 ~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~---~~~~~~~~~~~~   80 (501)
T PRK10762          4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEV---TFNGPKSSQEAG   80 (501)
T ss_pred             eEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC---CCCCHHHHHhCC
Confidence            3788998 7887766677666     899999999999999999999999999999987554211   000000111346


Q ss_pred             EEEEEecC
Q psy16868         79 VEIVFDNT   86 (109)
Q Consensus        79 i~~~fq~~   86 (109)
                      ++++||++
T Consensus        81 i~~v~q~~   88 (501)
T PRK10762         81 IGIIHQEL   88 (501)
T ss_pred             EEEEEcch
Confidence            89999985

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.54  E-value=7.2e-15  Score=99.70  Aligned_cols=79  Identities=20%  Similarity=0.316  Sum_probs=57.6

Q ss_pred             EEEEece-eecC--CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYK--EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~--~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      -++++|+ +.|.  ...++++++     |++++|+||||||||||+++|+|++.+..|.+.+.+...    ........+
T Consensus         7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i----~~~~~~~~~   82 (271)
T PRK13632          7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITI----SKENLKEIR   82 (271)
T ss_pred             EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEec----CcCCHHHHh
Confidence            3778888 6774  334566655     889999999999999999999999999999987554311    111111224


Q ss_pred             EEEEEEEecCC
Q psy16868         77 AYVEIVFDNTD   87 (109)
Q Consensus        77 ~~i~~~fq~~~   87 (109)
                      ..|++++|++.
T Consensus        83 ~~i~~v~q~~~   93 (271)
T PRK13632         83 KKIGIIFQNPD   93 (271)
T ss_pred             cceEEEEeCHH
Confidence            57999999863

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.54  E-value=1e-14  Score=97.96  Aligned_cols=80  Identities=14%  Similarity=0.230  Sum_probs=56.2

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc-----cCcccccccchhhhhhhcCCCCc
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS-----DESTSLRHSDSRQALLHEGTGPR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~   73 (109)
                      .|+++|+ +.|.+..++++++     |++++|+|+||||||||+++|+|++.     +..|.+.+.+...  ........
T Consensus         6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i--~~~~~~~~   83 (253)
T PRK14242          6 KMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENI--YDPHVDVV   83 (253)
T ss_pred             EEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEc--cccccCHH
Confidence            4778888 6787655666665     89999999999999999999999864     4678877554311  00001111


Q ss_pred             eeeEEEEEEEecC
Q psy16868         74 VVNAYVEIVFDNT   86 (109)
Q Consensus        74 ~~~~~i~~~fq~~   86 (109)
                      ..+..|++++|++
T Consensus        84 ~~~~~i~~v~q~~   96 (253)
T PRK14242         84 ELRRRVGMVFQKP   96 (253)
T ss_pred             HHhhcEEEEecCC
Confidence            2245799999985

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.54  E-value=4.7e-15  Score=107.64  Aligned_cols=95  Identities=19%  Similarity=0.244  Sum_probs=70.0

Q ss_pred             EEEece-eecCC-----------CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhc
Q psy16868          6 VIIHGF-KSYKE-----------QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHE   68 (109)
Q Consensus         6 i~i~n~-~~~~~-----------~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~   68 (109)
                      ++++|+ +.|..           ..++++++     |+..+|+|++|||||||.++|++++.|+.|.+.+.+..  ....
T Consensus       281 l~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~--~~~~  358 (539)
T COG1123         281 LSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD--LDLT  358 (539)
T ss_pred             eEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc--cccc
Confidence            567777 55652           23455555     89999999999999999999999999999998866643  2222


Q ss_pred             CCCCceeeEEEEEEEecCCCCCceeEEEeeccee
Q psy16868         69 GTGPRVVNAYVEIVFDNTDHRVPGFIRCRSTSVD  102 (109)
Q Consensus        69 ~~~~~~~~~~i~~~fq~~~~~~~~~~~~~~~~~~  102 (109)
                      .......++.+.++||+|...+.+.........+
T Consensus       359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~e  392 (539)
T COG1123         359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAE  392 (539)
T ss_pred             cchhhhhhhheEEEEeCcccccCccccHHHHHHh
Confidence            3333345678999999999998877766554433

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.53  E-value=2.8e-15  Score=98.30  Aligned_cols=80  Identities=19%  Similarity=0.265  Sum_probs=54.3

Q ss_pred             EEece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          7 IIHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         7 ~i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      +++|+ +.|.+ ..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...... ........+..+
T Consensus         2 ~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~-~~~~~~~~~~~i   80 (214)
T cd03292           2 EFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDL-RGRAIPYLRRKI   80 (214)
T ss_pred             EEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccC-CHHHHHHHHHhe
Confidence            45666 56643 34566555     889999999999999999999999999999987544211000 000001124579


Q ss_pred             EEEEecCC
Q psy16868         80 EIVFDNTD   87 (109)
Q Consensus        80 ~~~fq~~~   87 (109)
                      ++++|++.
T Consensus        81 ~~v~q~~~   88 (214)
T cd03292          81 GVVFQDFR   88 (214)
T ss_pred             EEEecCch
Confidence            99999863

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.53  E-value=5.6e-15  Score=98.97  Aligned_cols=81  Identities=23%  Similarity=0.356  Sum_probs=57.5

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhc-C---CCCcee
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHE-G---TGPRVV   75 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~-~---~~~~~~   75 (109)
                      ++++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.+..|.+.+.+........ .   ......
T Consensus         4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~   83 (250)
T PRK11264          4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQL   83 (250)
T ss_pred             EEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHh
Confidence            788888 6787666666665     88999999999999999999999999999988754431110000 0   001122


Q ss_pred             eEEEEEEEecC
Q psy16868         76 NAYVEIVFDNT   86 (109)
Q Consensus        76 ~~~i~~~fq~~   86 (109)
                      +..+++++|++
T Consensus        84 ~~~i~~v~q~~   94 (250)
T PRK11264         84 RQHVGFVFQNF   94 (250)
T ss_pred             hhhEEEEecCc
Confidence            45789999985

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.53  E-value=6.4e-15  Score=100.17  Aligned_cols=80  Identities=23%  Similarity=0.301  Sum_probs=57.0

Q ss_pred             EEEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          6 VIIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         6 i~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      |+++|+ +.|. ...++++++     |++++|+||||||||||+++|+|++.+..|.+.+.+....  ............
T Consensus         2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~--~~~~~~~~~~~~   79 (275)
T PRK13639          2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIK--YDKKSLLEVRKT   79 (275)
T ss_pred             EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECc--cccchHHHHHhh
Confidence            567777 6675 334566665     8999999999999999999999999999999885553111  011111122467


Q ss_pred             EEEEEecCC
Q psy16868         79 VEIVFDNTD   87 (109)
Q Consensus        79 i~~~fq~~~   87 (109)
                      |+++||++.
T Consensus        80 i~~v~q~~~   88 (275)
T PRK13639         80 VGIVFQNPD   88 (275)
T ss_pred             eEEEeeChh
Confidence            999999864

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.53  E-value=1.2e-14  Score=98.36  Aligned_cols=80  Identities=16%  Similarity=0.294  Sum_probs=56.6

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc-----cCcccccccchhhhhhhcCCCCce
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS-----DESTSLRHSDSRQALLHEGTGPRV   74 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~   74 (109)
                      ++++|+ +.|.+..++++++     |++++|+|+||||||||+++|+|++.     +..|.+.+.+..  +.........
T Consensus        22 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~--i~~~~~~~~~   99 (268)
T PRK14248         22 LEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLN--ILDSNINVVN   99 (268)
T ss_pred             EEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEE--cccccccHHH
Confidence            678888 6787766677665     89999999999999999999999864     577887754421  1100111112


Q ss_pred             eeEEEEEEEecCC
Q psy16868         75 VNAYVEIVFDNTD   87 (109)
Q Consensus        75 ~~~~i~~~fq~~~   87 (109)
                      .+..++++||++.
T Consensus       100 ~~~~i~~v~q~~~  112 (268)
T PRK14248        100 LRREIGMVFQKPN  112 (268)
T ss_pred             HhccEEEEecCCc
Confidence            2457999999863

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.53  E-value=4.9e-15  Score=98.09  Aligned_cols=78  Identities=14%  Similarity=0.304  Sum_probs=56.3

Q ss_pred             EEEEece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          5 QVIIHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         5 ~i~i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      .|+++|+ +.|.+ ..++++++     |++++|+||||||||||+++|+|++.+..|.+.+.+...   .. ......+.
T Consensus         2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~---~~-~~~~~~~~   77 (229)
T cd03254           2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDI---RD-ISRKSLRS   77 (229)
T ss_pred             eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeH---HH-cCHHHHhh
Confidence            4778888 67754 33566555     889999999999999999999999999999987554211   11 11112245


Q ss_pred             EEEEEEecC
Q psy16868         78 YVEIVFDNT   86 (109)
Q Consensus        78 ~i~~~fq~~   86 (109)
                      .++++||++
T Consensus        78 ~i~~~~q~~   86 (229)
T cd03254          78 MIGVVLQDT   86 (229)
T ss_pred             hEEEecCCc
Confidence            689999875

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.53  E-value=9.1e-15  Score=98.48  Aligned_cols=82  Identities=17%  Similarity=0.285  Sum_probs=58.3

Q ss_pred             eEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCC
Q psy16868          4 KQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGP   72 (109)
Q Consensus         4 ~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~   72 (109)
                      ..++++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.+     ..|.+.+.+...  .......
T Consensus         3 ~~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~--~~~~~~~   80 (258)
T PRK14241          3 KRIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDL--YGPGVDP   80 (258)
T ss_pred             ccEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEec--cccccCh
Confidence            46889999 7787666666665     899999999999999999999999874     588887544211  0000111


Q ss_pred             ceeeEEEEEEEecCC
Q psy16868         73 RVVNAYVEIVFDNTD   87 (109)
Q Consensus        73 ~~~~~~i~~~fq~~~   87 (109)
                      ...+..++++||++.
T Consensus        81 ~~~~~~i~~~~q~~~   95 (258)
T PRK14241         81 VAVRRTIGMVFQRPN   95 (258)
T ss_pred             HHHhcceEEEccccc
Confidence            122457999999753

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.53  E-value=1.2e-14  Score=97.63  Aligned_cols=81  Identities=11%  Similarity=0.188  Sum_probs=57.1

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC-----cccccccchhhhhhhcCCCCc
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE-----STSLRHSDSRQALLHEGTGPR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~   73 (109)
                      -|+++|+ ..|.+..++++++     |++++|+|+||||||||+++|+|++.+.     .|.+.+.+...  ........
T Consensus         7 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i--~~~~~~~~   84 (254)
T PRK14273          7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNI--YSNNFDIL   84 (254)
T ss_pred             eEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEec--ccccccHH
Confidence            3778888 6777655666665     8999999999999999999999999864     78877544311  00011111


Q ss_pred             eeeEEEEEEEecCC
Q psy16868         74 VVNAYVEIVFDNTD   87 (109)
Q Consensus        74 ~~~~~i~~~fq~~~   87 (109)
                      ..+..|++++|++.
T Consensus        85 ~~~~~i~~v~q~~~   98 (254)
T PRK14273         85 ELRRKIGMVFQTPN   98 (254)
T ss_pred             HHhhceEEEeeccc
Confidence            23467999999864

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.53  E-value=6.4e-15  Score=100.14  Aligned_cols=78  Identities=13%  Similarity=0.227  Sum_probs=55.6

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC--------cccccccchhhhhhhcCCC
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE--------STSLRHSDSRQALLHEGTG   71 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~--------~~~~~~~~~~~~~~~~~~~   71 (109)
                      |+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.+.        .|.+.+.+...   . ...
T Consensus         2 l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~---~-~~~   77 (272)
T PRK13547          2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPL---A-AID   77 (272)
T ss_pred             eEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEc---c-cCC
Confidence            677888 6777666676666     8899999999999999999999999887        78777544211   0 111


Q ss_pred             CceeeEEEEEEEecCC
Q psy16868         72 PRVVNAYVEIVFDNTD   87 (109)
Q Consensus        72 ~~~~~~~i~~~fq~~~   87 (109)
                      .......++++||++.
T Consensus        78 ~~~~~~~~~~v~q~~~   93 (272)
T PRK13547         78 APRLARLRAVLPQAAQ   93 (272)
T ss_pred             HHHHHhhcEEecccCC
Confidence            1112345788998864

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=99.53  E-value=3.1e-14  Score=111.01  Aligned_cols=89  Identities=22%  Similarity=0.354  Sum_probs=63.0

Q ss_pred             CeeeEEEEeceeecCCCeeEecCC------CCceEEEecCCCCcchHHHHHHHhhccCccccccc-chhhhhhhcCCCCc
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFD------KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHS-DSRQALLHEGTGPR   73 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~------~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~-~~~~~~~~~~~~~~   73 (109)
                      |++.+|+++||.+|.+...+ +|+      +++++|+|||||||||||+||++++++........ ....+++..+.   
T Consensus         1 Mk~~~l~~~nf~s~~~~~~i-df~~~~l~~~~l~~I~G~tGaGKStildai~~aLyg~~~r~~~~~~~~~~~~~~~~---   76 (1047)
T PRK10246          1 MKILSLRLKNLNSLKGEWKI-DFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLNNVSQSQNDLMTRDT---   76 (1047)
T ss_pred             CcceEEEeecceeEcCCceE-EEeeccCCCCCEEEEECCCCCCHHHHHHHHHHHhcCCCCCccccccchhhhhhCCC---
Confidence            99999999999999765445 553      68999999999999999999999998754432101 11122222222   


Q ss_pred             eeeEEEEEEEecCCCCCceeE
Q psy16868         74 VVNAYVEIVFDNTDHRVPGFI   94 (109)
Q Consensus        74 ~~~~~i~~~fq~~~~~~~~~~   94 (109)
                       ....|.+.|......|.+.+
T Consensus        77 -~~~~v~~~F~~~~~~y~~~~   96 (1047)
T PRK10246         77 -AECLAEVEFEVKGEAYRAFW   96 (1047)
T ss_pred             -cceEEEEEEEECCeEEEEEe
Confidence             26788999977666665554

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.53  E-value=4.3e-15  Score=94.63  Aligned_cols=76  Identities=16%  Similarity=0.187  Sum_probs=53.0

Q ss_pred             EEece-eecCCC--eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          7 IIHGF-KSYKEQ--TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         7 ~i~n~-~~~~~~--~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      +++|+ +.|.+.  .++++++     +++++|+||||||||||+++|+|++.+..|.+.+.+....    .......+..
T Consensus         2 ~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~----~~~~~~~~~~   77 (171)
T cd03228           2 EFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLR----DLDLESLRKN   77 (171)
T ss_pred             EEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhh----hcCHHHHHhh
Confidence            45666 556543  3454444     8999999999999999999999999999998875543111    1111122456


Q ss_pred             EEEEEecC
Q psy16868         79 VEIVFDNT   86 (109)
Q Consensus        79 i~~~fq~~   86 (109)
                      ++++||++
T Consensus        78 i~~~~~~~   85 (171)
T cd03228          78 IAYVPQDP   85 (171)
T ss_pred             EEEEcCCc
Confidence            89999876

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.53  E-value=4.8e-15  Score=99.50  Aligned_cols=54  Identities=17%  Similarity=0.271  Sum_probs=44.4

Q ss_pred             EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868          7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD   60 (109)
Q Consensus         7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~   60 (109)
                      +++|+ ..|.+..++++++     |++++|+||||||||||+++|+|++.+..|.+.+.+
T Consensus         2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g   61 (252)
T TIGR03005         2 RFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEG   61 (252)
T ss_pred             EEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence            56676 5666555566555     899999999999999999999999999999887554

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.53  E-value=4.6e-15  Score=98.49  Aligned_cols=76  Identities=16%  Similarity=0.184  Sum_probs=53.4

Q ss_pred             EEece-eecCCC--eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          7 IIHGF-KSYKEQ--TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         7 ~i~n~-~~~~~~--~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      +++|+ ..|.+.  .++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...   .. ......+..
T Consensus         2 ~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~---~~-~~~~~~~~~   77 (234)
T cd03251           2 EFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDV---RD-YTLASLRRQ   77 (234)
T ss_pred             EEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEh---hh-CCHHHHHhh
Confidence            46666 566543  3455544     889999999999999999999999999999987554311   11 111122456


Q ss_pred             EEEEEecC
Q psy16868         79 VEIVFDNT   86 (109)
Q Consensus        79 i~~~fq~~   86 (109)
                      ++++||++
T Consensus        78 i~~~~q~~   85 (234)
T cd03251          78 IGLVSQDV   85 (234)
T ss_pred             EEEeCCCC
Confidence            88998875

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.53  E-value=7.1e-15  Score=98.91  Aligned_cols=78  Identities=21%  Similarity=0.250  Sum_probs=56.3

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|+ ..|.+..++++++     |++++|+|+||||||||+++|+|++.+..|.+.+.+....    ..........+
T Consensus         2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~----~~~~~~~~~~i   77 (256)
T TIGR03873         2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLH----GLSRRARARRV   77 (256)
T ss_pred             ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcc----cCCHHHHhhhe
Confidence            466777 6676666666665     8999999999999999999999999999998875443111    11111123468


Q ss_pred             EEEEecCC
Q psy16868         80 EIVFDNTD   87 (109)
Q Consensus        80 ~~~fq~~~   87 (109)
                      ++++|++.
T Consensus        78 ~~~~q~~~   85 (256)
T TIGR03873        78 ALVEQDSD   85 (256)
T ss_pred             EEecccCc
Confidence            89998863

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.53  E-value=9.1e-15  Score=95.29  Aligned_cols=76  Identities=9%  Similarity=0.016  Sum_probs=54.5

Q ss_pred             EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      +++|+ ..|.+..++++++     |++++|+|+||||||||+++|+|++.+..|.+.+.+...   ..  .....+..++
T Consensus         2 ~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~---~~--~~~~~~~~i~   76 (201)
T cd03231           2 EADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPL---DF--QRDSIARGLL   76 (201)
T ss_pred             EEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEec---cc--ccHHhhhheE
Confidence            45666 5566555566655     899999999999999999999999999999987554311   11  1112345788


Q ss_pred             EEEecCC
Q psy16868         81 IVFDNTD   87 (109)
Q Consensus        81 ~~fq~~~   87 (109)
                      +++|.+.
T Consensus        77 ~~~q~~~   83 (201)
T cd03231          77 YLGHAPG   83 (201)
T ss_pred             Eeccccc
Confidence            9988753

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.53  E-value=8.7e-15  Score=101.49  Aligned_cols=84  Identities=13%  Similarity=0.222  Sum_probs=59.1

Q ss_pred             EEEEece-eecCC-----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhh------
Q psy16868          5 QVIIHGF-KSYKE-----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLH------   67 (109)
Q Consensus         5 ~i~i~n~-~~~~~-----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~------   67 (109)
                      .|+++|+ ..|..     ..++++++     |++++|+|+||||||||+++|+|++.+..|.+.+.+....-..      
T Consensus        21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~  100 (320)
T PRK13631         21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI  100 (320)
T ss_pred             eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence            3778888 67753     23566665     8999999999999999999999999999999886542110000      


Q ss_pred             -c---C--CCCceeeEEEEEEEecCCC
Q psy16868         68 -E---G--TGPRVVNAYVEIVFDNTDH   88 (109)
Q Consensus        68 -~---~--~~~~~~~~~i~~~fq~~~~   88 (109)
                       .   .  ......+..|+++||++..
T Consensus       101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~  127 (320)
T PRK13631        101 TNPYSKKIKNFKELRRRVSMVFQFPEY  127 (320)
T ss_pred             ccccccccchHHHHHhcEEEEEECchh
Confidence             0   0  0112235679999998743

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.53  E-value=1.8e-14  Score=96.91  Aligned_cols=76  Identities=20%  Similarity=0.169  Sum_probs=56.6

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc----CcccccccchhhhhhhcCCCCce
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD----ESTSLRHSDSRQALLHEGTGPRV   74 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~   74 (109)
                      .|+++|+ +.| +..++++++     |++++|+|+||||||||+++|+|++.+    ..|.+.+.+....      ....
T Consensus         4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~------~~~~   76 (254)
T PRK10418          4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVA------PCAL   76 (254)
T ss_pred             EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecc------cccc
Confidence            5888998 677 444566655     899999999999999999999999988    8888875443111      1111


Q ss_pred             eeEEEEEEEecCC
Q psy16868         75 VNAYVEIVFDNTD   87 (109)
Q Consensus        75 ~~~~i~~~fq~~~   87 (109)
                      ....|+++||++.
T Consensus        77 ~~~~i~~v~q~~~   89 (254)
T PRK10418         77 RGRKIATIMQNPR   89 (254)
T ss_pred             ccceEEEEecCCc
Confidence            2356999999864

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.53  E-value=1.4e-14  Score=97.07  Aligned_cols=80  Identities=15%  Similarity=0.262  Sum_probs=56.8

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCCc
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGPR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~   73 (109)
                      .++++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.+     ..|.+.+.+..   +.......
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~---~~~~~~~~   79 (249)
T PRK14253          3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGED---IYGNIDVA   79 (249)
T ss_pred             eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEE---cccccchH
Confidence            4778888 6787666677666     899999999999999999999999885     36777644421   10011111


Q ss_pred             eeeEEEEEEEecCC
Q psy16868         74 VVNAYVEIVFDNTD   87 (109)
Q Consensus        74 ~~~~~i~~~fq~~~   87 (109)
                      ..+..++++||++.
T Consensus        80 ~~~~~i~~~~q~~~   93 (249)
T PRK14253         80 DLRIKVGMVFQKPN   93 (249)
T ss_pred             HHHhheeEEecCCC
Confidence            23456999999863

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.53  E-value=9.7e-15  Score=95.32  Aligned_cols=76  Identities=8%  Similarity=0.066  Sum_probs=54.8

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      ++++|+ +.|....++.+++     +++++|+|+||||||||+++|+|++.|..|.+.+.+....   ..  .......+
T Consensus         2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~---~~--~~~~~~~~   76 (204)
T PRK13538          2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIR---RQ--RDEYHQDL   76 (204)
T ss_pred             eEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcc---cc--hHHhhhhe
Confidence            566777 6676655566665     8899999999999999999999999999999875543111   00  01123457


Q ss_pred             EEEEecC
Q psy16868         80 EIVFDNT   86 (109)
Q Consensus        80 ~~~fq~~   86 (109)
                      ++++|.+
T Consensus        77 ~~~~~~~   83 (204)
T PRK13538         77 LYLGHQP   83 (204)
T ss_pred             EEeCCcc
Confidence            8888764

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.53  E-value=1.5e-14  Score=95.15  Aligned_cols=74  Identities=22%  Similarity=0.309  Sum_probs=56.2

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|+ +.|.+..++.+++     |++++|+|+||||||||+++|+|++.+..|.+.+.+...   ...    .....+
T Consensus        12 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i---~~~----~~~~~i   84 (214)
T PRK13543         12 LAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTA---TRG----DRSRFM   84 (214)
T ss_pred             EEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEc---cch----hhhhce
Confidence            778888 6787666666665     899999999999999999999999999999987554311   111    123468


Q ss_pred             EEEEecC
Q psy16868         80 EIVFDNT   86 (109)
Q Consensus        80 ~~~fq~~   86 (109)
                      ++++|.+
T Consensus        85 ~~~~q~~   91 (214)
T PRK13543         85 AYLGHLP   91 (214)
T ss_pred             EEeecCc
Confidence            8888864

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.53  E-value=2.1e-14  Score=96.42  Aligned_cols=82  Identities=17%  Similarity=0.357  Sum_probs=58.2

Q ss_pred             eEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc--c---CcccccccchhhhhhhcCCCC
Q psy16868          4 KQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS--D---ESTSLRHSDSRQALLHEGTGP   72 (109)
Q Consensus         4 ~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~--~---~~~~~~~~~~~~~~~~~~~~~   72 (109)
                      ..|+++|+ ..|.+..++++++     |++++|+|+||||||||+++|+|++.  |   ..|.+.+.+..  +.......
T Consensus         3 ~~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~--i~~~~~~~   80 (252)
T PRK14256          3 NKVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTD--IYDRGVDP   80 (252)
T ss_pred             cEEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEE--cccccCCh
Confidence            45888998 7787666677766     89999999999999999999999985  3   47887755431  11111111


Q ss_pred             ceeeEEEEEEEecCC
Q psy16868         73 RVVNAYVEIVFDNTD   87 (109)
Q Consensus        73 ~~~~~~i~~~fq~~~   87 (109)
                      ...+..++++||++.
T Consensus        81 ~~~~~~i~~~~q~~~   95 (252)
T PRK14256         81 VSIRRRVGMVFQKPN   95 (252)
T ss_pred             HHhhccEEEEecCCC
Confidence            123567999999864

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.52  E-value=8e-15  Score=107.02  Aligned_cols=80  Identities=19%  Similarity=0.227  Sum_probs=58.3

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      -|+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+..   +.........+..
T Consensus        11 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~---~~~~~~~~~~~~~   87 (510)
T PRK15439         11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNP---CARLTPAKAHQLG   87 (510)
T ss_pred             eEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE---CCCCCHHHHHhCC
Confidence            3788998 7787766676665     88999999999999999999999999999998754421   1110000111245


Q ss_pred             EEEEEecCC
Q psy16868         79 VEIVFDNTD   87 (109)
Q Consensus        79 i~~~fq~~~   87 (109)
                      |+++||++.
T Consensus        88 i~~v~q~~~   96 (510)
T PRK15439         88 IYLVPQEPL   96 (510)
T ss_pred             EEEEeccCc
Confidence            899999863

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.52  E-value=4.4e-15  Score=103.23  Aligned_cols=85  Identities=16%  Similarity=0.243  Sum_probs=59.1

Q ss_pred             EEEEece-eecCC----------CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhc
Q psy16868          5 QVIIHGF-KSYKE----------QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHE   68 (109)
Q Consensus         5 ~i~i~n~-~~~~~----------~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~   68 (109)
                      -|+++|+ +.|..          ..++++++     |++++|+|+||||||||+++|+|++.+..|.+.+.+....-. .
T Consensus         5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~-~   83 (327)
T PRK11308          5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA-D   83 (327)
T ss_pred             eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC-C
Confidence            3678888 66742          34566665     899999999999999999999999999999987655311000 0


Q ss_pred             CCCCceeeEEEEEEEecCCCCC
Q psy16868         69 GTGPRVVNAYVEIVFDNTDHRV   90 (109)
Q Consensus        69 ~~~~~~~~~~i~~~fq~~~~~~   90 (109)
                      .......+..|+++||++...+
T Consensus        84 ~~~~~~~r~~i~~v~Q~~~~~l  105 (327)
T PRK11308         84 PEAQKLLRQKIQIVFQNPYGSL  105 (327)
T ss_pred             HHHHHHHhCCEEEEEcCchhhc
Confidence            0011122457999999985443

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.52  E-value=6.1e-15  Score=94.43  Aligned_cols=75  Identities=20%  Similarity=0.310  Sum_probs=53.4

Q ss_pred             EEece-eecCCC--eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          7 IIHGF-KSYKEQ--TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         7 ~i~n~-~~~~~~--~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      +++|+ +.|...  .++++++     |++++|+||||||||||+++|+|+..+..|.+.+.+......     ....+..
T Consensus         2 ~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-----~~~~~~~   76 (178)
T cd03247           2 SINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-----EKALSSL   76 (178)
T ss_pred             EEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-----HHHHHhh
Confidence            45666 556543  3455554     899999999999999999999999999999987555321111     1112456


Q ss_pred             EEEEEecC
Q psy16868         79 VEIVFDNT   86 (109)
Q Consensus        79 i~~~fq~~   86 (109)
                      +++++|++
T Consensus        77 i~~~~q~~   84 (178)
T cd03247          77 ISVLNQRP   84 (178)
T ss_pred             EEEEccCC
Confidence            89999875

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.52  E-value=4.5e-15  Score=103.16  Aligned_cols=85  Identities=19%  Similarity=0.246  Sum_probs=57.0

Q ss_pred             EEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc----CcccccccchhhhhhhcCCC
Q psy16868          6 VIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD----ESTSLRHSDSRQALLHEGTG   71 (109)
Q Consensus         6 i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~----~~~~~~~~~~~~~~~~~~~~   71 (109)
                      |+++|+ ..|..    ..++++++     |++++|+|+||||||||+++|+|++.+    ..|.+.+.+....-......
T Consensus         4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~   83 (326)
T PRK11022          4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER   83 (326)
T ss_pred             EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence            788888 67765    34677766     899999999999999999999999973    67777755431100000000


Q ss_pred             CceeeEEEEEEEecCCCCC
Q psy16868         72 PRVVNAYVEIVFDNTDHRV   90 (109)
Q Consensus        72 ~~~~~~~i~~~fq~~~~~~   90 (109)
                      .......|+++||++...+
T Consensus        84 ~~~r~~~i~~v~Q~~~~~l  102 (326)
T PRK11022         84 RNLVGAEVAMIFQDPMTSL  102 (326)
T ss_pred             HHHhCCCEEEEecCchhhc
Confidence            0011246999999975433

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.52  E-value=1.4e-14  Score=97.09  Aligned_cols=80  Identities=16%  Similarity=0.272  Sum_probs=56.2

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCCce
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGPRV   74 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~   74 (109)
                      |+++|+ +.|.+..++++++     |++++|+|+||||||||+++|+|++.+     ..|.+.+.+...  .........
T Consensus         4 l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~--~~~~~~~~~   81 (250)
T PRK14262          4 IEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDI--YDPQLDVTE   81 (250)
T ss_pred             EEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEc--ccchhhHHH
Confidence            778888 6777656666665     899999999999999999999999873     678877544211  000011112


Q ss_pred             eeEEEEEEEecCC
Q psy16868         75 VNAYVEIVFDNTD   87 (109)
Q Consensus        75 ~~~~i~~~fq~~~   87 (109)
                      .+..++++||++.
T Consensus        82 ~~~~i~~~~q~~~   94 (250)
T PRK14262         82 YRKKVGMVFQKPT   94 (250)
T ss_pred             hhhhEEEEecCCc
Confidence            2457999999863

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.52  E-value=1.1e-14  Score=98.78  Aligned_cols=80  Identities=16%  Similarity=0.253  Sum_probs=56.5

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc-----cCcccccccchhhhhhhcCCCCc
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS-----DESTSLRHSDSRQALLHEGTGPR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~   73 (109)
                      .|+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.     |..|.+.+.+..  +........
T Consensus        13 ~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~--i~~~~~~~~   90 (269)
T PRK14259         13 IISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTD--LYDPRVDPV   90 (269)
T ss_pred             eEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE--cccccCCHH
Confidence            3778888 6787666666665     89999999999999999999999986     477887754421  100001111


Q ss_pred             eeeEEEEEEEecC
Q psy16868         74 VVNAYVEIVFDNT   86 (109)
Q Consensus        74 ~~~~~i~~~fq~~   86 (109)
                      ..+..|+++||++
T Consensus        91 ~~~~~i~~v~q~~  103 (269)
T PRK14259         91 EVRRRIGMVFQQP  103 (269)
T ss_pred             HHhhceEEEccCC
Confidence            2245699999986

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.52  E-value=1.1e-14  Score=94.90  Aligned_cols=77  Identities=14%  Similarity=0.117  Sum_probs=53.1

Q ss_pred             EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhh--ccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVL--SDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      +++|+ +.|.+..++++++     |++++|+|+||||||||+++|+|+.  .|..|.+.+.+...   .........+..
T Consensus         2 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~---~~~~~~~~~~~~   78 (200)
T cd03217           2 EIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDI---TDLPPEERARLG   78 (200)
T ss_pred             eEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEEC---CcCCHHHHhhCc
Confidence            45666 5666555566665     8899999999999999999999994  68889887554311   110111111345


Q ss_pred             EEEEEecC
Q psy16868         79 VEIVFDNT   86 (109)
Q Consensus        79 i~~~fq~~   86 (109)
                      +++++|.+
T Consensus        79 i~~v~q~~   86 (200)
T cd03217          79 IFLAFQYP   86 (200)
T ss_pred             EEEeecCh
Confidence            89999875

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.52  E-value=1.8e-14  Score=97.83  Aligned_cols=80  Identities=14%  Similarity=0.320  Sum_probs=56.8

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc-----cCcccccccchhhhhhhcCCCCce
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS-----DESTSLRHSDSRQALLHEGTGPRV   74 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~   74 (109)
                      |+++|+ ..|.+..++++++     |++++|+|+||||||||+++|+|++.     +..|.+.+.+..  +.........
T Consensus        25 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~--~~~~~~~~~~  102 (271)
T PRK14238         25 FDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQN--IFDKSYSVEE  102 (271)
T ss_pred             EEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEE--cccccccHHH
Confidence            778888 6777655566665     89999999999999999999999987     578888754421  1100111112


Q ss_pred             eeEEEEEEEecCC
Q psy16868         75 VNAYVEIVFDNTD   87 (109)
Q Consensus        75 ~~~~i~~~fq~~~   87 (109)
                      .+..++++||++.
T Consensus       103 ~~~~i~~v~q~~~  115 (271)
T PRK14238        103 LRTNVGMVFQKPN  115 (271)
T ss_pred             HhhhEEEEecCCc
Confidence            2457999999863

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.52  E-value=1.1e-14  Score=94.56  Aligned_cols=75  Identities=19%  Similarity=0.173  Sum_probs=53.4

Q ss_pred             EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      +++|+ +.|....++++++     +++++|+||||||||||+++|+|++.|..|.+.+.+....   . .. ......++
T Consensus         2 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~---~-~~-~~~~~~i~   76 (198)
T TIGR01189         2 AARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALA---E-QR-DEPHRNIL   76 (198)
T ss_pred             EEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcc---c-ch-HHhhhheE
Confidence            45666 5666655566655     8999999999999999999999999999998875543111   1 01 11235688


Q ss_pred             EEEecC
Q psy16868         81 IVFDNT   86 (109)
Q Consensus        81 ~~fq~~   86 (109)
                      +++|.+
T Consensus        77 ~~~q~~   82 (198)
T TIGR01189        77 YLGHLP   82 (198)
T ss_pred             EeccCc
Confidence            888764

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.51  E-value=1.2e-14  Score=95.04  Aligned_cols=78  Identities=17%  Similarity=0.264  Sum_probs=57.2

Q ss_pred             EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .++++|+ ..|.+  ..++++++     |++++|+|+||||||||+++|+|++.+..|.+.+.+...   . .......+
T Consensus         6 ~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~---~-~~~~~~~~   81 (207)
T cd03369           6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDI---S-TIPLEDLR   81 (207)
T ss_pred             eEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEh---H-HCCHHHHH
Confidence            5778888 66764  24566655     899999999999999999999999999999987555311   1 11111224


Q ss_pred             EEEEEEEecC
Q psy16868         77 AYVEIVFDNT   86 (109)
Q Consensus        77 ~~i~~~fq~~   86 (109)
                      ..|+++||++
T Consensus        82 ~~i~~v~q~~   91 (207)
T cd03369          82 SSLTIIPQDP   91 (207)
T ss_pred             hhEEEEecCC
Confidence            5799999986

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.51  E-value=2.2e-14  Score=96.73  Aligned_cols=81  Identities=16%  Similarity=0.340  Sum_probs=56.6

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCCc
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGPR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~   73 (109)
                      -|+++|+ ..|.+..++++++     |++++|+|+||||||||+++|+|++.+     ..|.+.+.+..  +........
T Consensus        12 ~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~--~~~~~~~~~   89 (259)
T PRK14274         12 VYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSN--ILKGKVDLV   89 (259)
T ss_pred             eEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEE--ccccccCHH
Confidence            4788888 6777655666655     899999999999999999999999863     47887755431  110011111


Q ss_pred             eeeEEEEEEEecCC
Q psy16868         74 VVNAYVEIVFDNTD   87 (109)
Q Consensus        74 ~~~~~i~~~fq~~~   87 (109)
                      ..+..|+++||++.
T Consensus        90 ~~~~~i~~v~q~~~  103 (259)
T PRK14274         90 ELRKNIGMVFQKGN  103 (259)
T ss_pred             HHhhceEEEecCCc
Confidence            22457999999853

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.51  E-value=2.3e-14  Score=89.11  Aligned_cols=52  Identities=23%  Similarity=0.344  Sum_probs=41.9

Q ss_pred             EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccc
Q psy16868          7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRH   58 (109)
Q Consensus         7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~   58 (109)
                      +++|+ ..|.+..++++++     +++++|+|+||||||||+++|+|++.+..|.+.+
T Consensus         2 ~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~   59 (144)
T cd03221           2 ELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW   59 (144)
T ss_pred             EEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEE
Confidence            45666 4565545555554     8999999999999999999999999999998763

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.51  E-value=2.1e-14  Score=97.25  Aligned_cols=80  Identities=13%  Similarity=0.255  Sum_probs=56.8

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc-----cCcccccccchhhhhhhcCCCCc
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS-----DESTSLRHSDSRQALLHEGTGPR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~   73 (109)
                      .|+++|+ ..|.+..++++++     |++++|+|+||||||||+++|+|++.     +..|.+.+.+..  +........
T Consensus        20 ~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~--~~~~~~~~~   97 (267)
T PRK14237         20 ALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGID--INRKEINVY   97 (267)
T ss_pred             EEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEE--cccccCChH
Confidence            4778888 6777666666665     89999999999999999999999986     367887754421  110011111


Q ss_pred             eeeEEEEEEEecC
Q psy16868         74 VVNAYVEIVFDNT   86 (109)
Q Consensus        74 ~~~~~i~~~fq~~   86 (109)
                      ..+..|+++||++
T Consensus        98 ~~~~~i~~v~q~~  110 (267)
T PRK14237         98 EMRKHIGMVFQRP  110 (267)
T ss_pred             HHhcceEEEecCC
Confidence            2255799999975

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.51  E-value=2.2e-14  Score=97.04  Aligned_cols=82  Identities=16%  Similarity=0.260  Sum_probs=56.2

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCCc
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGPR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~   73 (109)
                      .|+++|+ +.|.+..++++++     |++++|+|+||||||||+++|+|++.+     .+|.+.+.+.............
T Consensus        16 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~   95 (265)
T PRK14252         16 KSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPI   95 (265)
T ss_pred             eEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHH
Confidence            4778888 6787656666665     899999999999999999999999874     5777764432111100000111


Q ss_pred             eeeEEEEEEEecC
Q psy16868         74 VVNAYVEIVFDNT   86 (109)
Q Consensus        74 ~~~~~i~~~fq~~   86 (109)
                      ..+..|++++|++
T Consensus        96 ~~~~~i~~~~q~~  108 (265)
T PRK14252         96 EVRMRISMVFQKP  108 (265)
T ss_pred             HHhccEEEEccCC
Confidence            2345789999875

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.51  E-value=2.4e-14  Score=95.93  Aligned_cols=81  Identities=12%  Similarity=0.245  Sum_probs=57.0

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCCc
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGPR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~   73 (109)
                      .|+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.+     ..|.+.+.+...  ........
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~--~~~~~~~~   80 (250)
T PRK14240          3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDI--YKSDIDVN   80 (250)
T ss_pred             eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc--cccccchH
Confidence            4788898 7787666676665     899999999999999999999998753     478877554311  10011111


Q ss_pred             eeeEEEEEEEecCC
Q psy16868         74 VVNAYVEIVFDNTD   87 (109)
Q Consensus        74 ~~~~~i~~~fq~~~   87 (109)
                      ..+..++++||++.
T Consensus        81 ~~~~~i~~~~q~~~   94 (250)
T PRK14240         81 QLRKRVGMVFQQPN   94 (250)
T ss_pred             HHhccEEEEecCCc
Confidence            23457999999853

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.51  E-value=2.7e-14  Score=95.74  Aligned_cols=82  Identities=17%  Similarity=0.260  Sum_probs=58.0

Q ss_pred             eEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC-----cccccccchhhhhhhcCCCC
Q psy16868          4 KQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE-----STSLRHSDSRQALLHEGTGP   72 (109)
Q Consensus         4 ~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~-----~~~~~~~~~~~~~~~~~~~~   72 (109)
                      .-++++|+ +.|.+..++++++     |++++|+|+||||||||+++|+|++.|.     .|.+.+.+....  ......
T Consensus         3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~--~~~~~~   80 (252)
T PRK14272          3 LLLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY--GPRVDP   80 (252)
T ss_pred             EEEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcc--cCccCH
Confidence            35888998 7787666676665     8899999999999999999999998764     688775442110  000111


Q ss_pred             ceeeEEEEEEEecCC
Q psy16868         73 RVVNAYVEIVFDNTD   87 (109)
Q Consensus        73 ~~~~~~i~~~fq~~~   87 (109)
                      ...+..++++||++.
T Consensus        81 ~~~~~~i~~~~q~~~   95 (252)
T PRK14272         81 VAMRRRVGMVFQKPN   95 (252)
T ss_pred             HHhhceeEEEeccCc
Confidence            123567999999863

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.51  E-value=1.2e-14  Score=96.08  Aligned_cols=78  Identities=15%  Similarity=0.203  Sum_probs=56.0

Q ss_pred             EEEEece-eecCC---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868          5 QVIIHGF-KSYKE---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV   75 (109)
Q Consensus         5 ~i~i~n~-~~~~~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (109)
                      .++++|+ ..|.+   ..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+....   . ......
T Consensus        11 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~---~-~~~~~~   86 (226)
T cd03248          11 IVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPIS---Q-YEHKYL   86 (226)
T ss_pred             eEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchH---H-cCHHHH
Confidence            4678888 66754   23455555     8999999999999999999999999999999875543111   1 111122


Q ss_pred             eEEEEEEEecC
Q psy16868         76 NAYVEIVFDNT   86 (109)
Q Consensus        76 ~~~i~~~fq~~   86 (109)
                      +..++++||++
T Consensus        87 ~~~i~~~~q~~   97 (226)
T cd03248          87 HSKVSLVGQEP   97 (226)
T ss_pred             HhhEEEEeccc
Confidence            45689999875

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.51  E-value=7.5e-15  Score=102.24  Aligned_cols=82  Identities=17%  Similarity=0.205  Sum_probs=57.6

Q ss_pred             EEEece-eecCC-------------CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhh
Q psy16868          6 VIIHGF-KSYKE-------------QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALL   66 (109)
Q Consensus         6 i~i~n~-~~~~~-------------~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~   66 (109)
                      |+++|+ +.|..             ..++++++     |++++|+|+||||||||+++|+|++.+..|.+.+.+....-.
T Consensus         9 l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~   88 (331)
T PRK15079          9 LEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGM   88 (331)
T ss_pred             EEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcC
Confidence            678888 66742             34566665     899999999999999999999999999999988655311000


Q ss_pred             hcCCCCceeeEEEEEEEecCCC
Q psy16868         67 HEGTGPRVVNAYVEIVFDNTDH   88 (109)
Q Consensus        67 ~~~~~~~~~~~~i~~~fq~~~~   88 (109)
                       ........+..|+++||++..
T Consensus        89 -~~~~~~~~r~~i~~v~Q~~~~  109 (331)
T PRK15079         89 -KDDEWRAVRSDIQMIFQDPLA  109 (331)
T ss_pred             -CHHHHHHHhCceEEEecCchh
Confidence             000111124579999999743

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.51  E-value=2.9e-14  Score=90.48  Aligned_cols=66  Identities=12%  Similarity=0.197  Sum_probs=50.2

Q ss_pred             EEece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          7 IIHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         7 ~i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      +++|+ ..|.+ ..++++++     +++++|+|+||||||||+++|+|++.+..|.+.+.+               ...+
T Consensus         2 ~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~---------------~~~i   66 (166)
T cd03223           2 ELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPE---------------GEDL   66 (166)
T ss_pred             EEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC---------------CceE
Confidence            45566 45642 34565555     899999999999999999999999999999876321               2568


Q ss_pred             EEEEecCC
Q psy16868         80 EIVFDNTD   87 (109)
Q Consensus        80 ~~~fq~~~   87 (109)
                      ++++|++.
T Consensus        67 ~~~~q~~~   74 (166)
T cd03223          67 LFLPQRPY   74 (166)
T ss_pred             EEECCCCc
Confidence            88998753

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.51  E-value=2e-14  Score=94.63  Aligned_cols=81  Identities=14%  Similarity=0.096  Sum_probs=53.1

Q ss_pred             EEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          7 IIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         7 ~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      .+.|+ ..|. ...++++++     +++++|+||||||||||+++|+|++.+..|.+.+.+...............+..+
T Consensus         2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i   81 (218)
T cd03290           2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV   81 (218)
T ss_pred             eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence            34555 4564 233455554     8999999999999999999999999999999875543111000000011123568


Q ss_pred             EEEEecCC
Q psy16868         80 EIVFDNTD   87 (109)
Q Consensus        80 ~~~fq~~~   87 (109)
                      ++++|++.
T Consensus        82 ~~~~q~~~   89 (218)
T cd03290          82 AYAAQKPW   89 (218)
T ss_pred             EEEcCCCc
Confidence            99999863

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.51  E-value=1.8e-14  Score=96.43  Aligned_cols=78  Identities=14%  Similarity=0.181  Sum_probs=54.9

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhh--ccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVL--SDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      |+++|+ +.|.+..++++++     |++++|+|+||||||||+++|+|++  .+..|.+.+.+...   .........+.
T Consensus         2 i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~---~~~~~~~~~~~   78 (248)
T PRK09580          2 LSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL---LELSPEDRAGE   78 (248)
T ss_pred             eEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCcc---ccCCHHHHhhc
Confidence            567788 6776655666665     8899999999999999999999995  58889887554211   11011111134


Q ss_pred             EEEEEEecC
Q psy16868         78 YVEIVFDNT   86 (109)
Q Consensus        78 ~i~~~fq~~   86 (109)
                      .+++++|++
T Consensus        79 ~i~~~~q~~   87 (248)
T PRK09580         79 GIFMAFQYP   87 (248)
T ss_pred             ceEEEecCc
Confidence            688899886

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.51  E-value=1.1e-13  Score=101.84  Aligned_cols=89  Identities=19%  Similarity=0.260  Sum_probs=63.0

Q ss_pred             CeeeEEEEeceeecCCCe-eEecCC-CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          1 MYIKQVIIHGFKSYKEQT-VVEPFD-KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~-~l~~~~-~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      |+|.+|+++||++|++.. .+ +|+ .++++|+||||+|||||++||++++++...... .  ...++....   .....
T Consensus         2 ~~~~~l~l~nf~s~~~~~~~i-~f~~~g~~~i~G~NG~GKStll~aI~~~l~G~~~~~~-~--~~~~~~~~~---~~~~~   74 (562)
T PHA02562          2 LKFKKIRYKNILSVGNQPIEI-QLDKVKKTLITGKNGAGKSTMLEALTFALFGKPFRDI-K--KGQLINSIN---KKDLL   74 (562)
T ss_pred             ceEEEEEEEcccccCCCceEE-EEcCCCEEEEECCCCCCHHHHHHHHHHHHcCCCcCcC-C--HHHhhccCC---CCcEE
Confidence            678999999999998753 35 676 589999999999999999999999976432211 0  112222111   12577


Q ss_pred             EEEEEecCCCCCceeEEE
Q psy16868         79 VEIVFDNTDHRVPGFIRC   96 (109)
Q Consensus        79 i~~~fq~~~~~~~~~~~~   96 (109)
                      |.+.|+..+..+.+.+..
T Consensus        75 v~l~f~~~~~~y~i~R~~   92 (562)
T PHA02562         75 VELWFEYGEKEYYIKRGI   92 (562)
T ss_pred             EEEEEEECCEEEEEEEec
Confidence            888998776666665543

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.51  E-value=1e-14  Score=96.01  Aligned_cols=79  Identities=16%  Similarity=0.240  Sum_probs=55.9

Q ss_pred             EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .++++|+ +.|.+  ..++++++     |++++|+||||||||||+++|+|+..+..|.+.+.+...   .. ......+
T Consensus         2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~---~~-~~~~~~~   77 (220)
T cd03245           2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDI---RQ-LDPADLR   77 (220)
T ss_pred             eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEh---HH-CCHHHHH
Confidence            4677888 66754  33455554     899999999999999999999999999999887554311   11 0111123


Q ss_pred             EEEEEEEecCC
Q psy16868         77 AYVEIVFDNTD   87 (109)
Q Consensus        77 ~~i~~~fq~~~   87 (109)
                      ..+++++|++.
T Consensus        78 ~~i~~~~q~~~   88 (220)
T cd03245          78 RNIGYVPQDVT   88 (220)
T ss_pred             hhEEEeCCCCc
Confidence            56899999863

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.51  E-value=2e-14  Score=97.61  Aligned_cols=76  Identities=18%  Similarity=0.268  Sum_probs=57.1

Q ss_pred             EEEEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          5 QVIIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         5 ~i~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      .|+++|+ +.|. +..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...   ..    .....
T Consensus         6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i---~~----~~~~~   78 (272)
T PRK15056          6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPT---RQ----ALQKN   78 (272)
T ss_pred             eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEh---HH----hhccc
Confidence            4788898 7784 455566665     899999999999999999999999999999987554321   11    11124


Q ss_pred             EEEEEEecCC
Q psy16868         78 YVEIVFDNTD   87 (109)
Q Consensus        78 ~i~~~fq~~~   87 (109)
                      .+++++|++.
T Consensus        79 ~i~~v~q~~~   88 (272)
T PRK15056         79 LVAYVPQSEE   88 (272)
T ss_pred             eEEEeccccc
Confidence            6899999864

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.51  E-value=2.6e-14  Score=95.84  Aligned_cols=81  Identities=15%  Similarity=0.252  Sum_probs=56.7

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc-----cCcccccccchhhhhhhcCCCCc
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS-----DESTSLRHSDSRQALLHEGTGPR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~   73 (109)
                      .|+++|+ ..|....++++++     |++++|+|+||||||||+++|+|++.     +..|.+.+.+..  .........
T Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~--~~~~~~~~~   81 (251)
T PRK14251          4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQN--IYGSKMDLV   81 (251)
T ss_pred             eEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEE--cccccchHH
Confidence            4788888 6787666666655     89999999999999999999999986     367887754431  110011111


Q ss_pred             eeeEEEEEEEecCC
Q psy16868         74 VVNAYVEIVFDNTD   87 (109)
Q Consensus        74 ~~~~~i~~~fq~~~   87 (109)
                      ..+..+++++|++.
T Consensus        82 ~~~~~i~~~~q~~~   95 (251)
T PRK14251         82 ELRKEVGMVFQQPT   95 (251)
T ss_pred             HhhccEEEEecCCc
Confidence            22457999999853

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.51  E-value=5.4e-15  Score=102.93  Aligned_cols=85  Identities=18%  Similarity=0.252  Sum_probs=57.8

Q ss_pred             EEEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC---cccccccchhhhhhhcCCC
Q psy16868          5 QVIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE---STSLRHSDSRQALLHEGTG   71 (109)
Q Consensus         5 ~i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~---~~~~~~~~~~~~~~~~~~~   71 (109)
                      .|+++|+ +.|..    ..++++++     |++++|+|+||||||||+++|+|++.+.   .|.+.+.+....-. ....
T Consensus        12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~-~~~~   90 (330)
T PRK09473         12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNL-PEKE   90 (330)
T ss_pred             eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcC-CHHH
Confidence            4788888 67742    34566665     8999999999999999999999999875   78887555311100 0000


Q ss_pred             Cc-eeeEEEEEEEecCCCCC
Q psy16868         72 PR-VVNAYVEIVFDNTDHRV   90 (109)
Q Consensus        72 ~~-~~~~~i~~~fq~~~~~~   90 (109)
                      .. .....|+++||++...+
T Consensus        91 ~~~~r~~~i~~v~Q~~~~~l  110 (330)
T PRK09473         91 LNKLRAEQISMIFQDPMTSL  110 (330)
T ss_pred             HHHHhcCCEEEEEcCchhhc
Confidence            00 11247999999985433

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.51  E-value=1.6e-14  Score=96.65  Aligned_cols=78  Identities=13%  Similarity=0.224  Sum_probs=56.2

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc---cCcccccccchhhhhhhcCCCCceee
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS---DESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      ++++|+ +.|.+..++++++     |++++|+|+||||||||+++|+|++.   +..|.+.+.+...   . .......+
T Consensus         3 ~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i---~-~~~~~~~~   78 (246)
T PRK14269          3 AKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV---K-NQDVVALR   78 (246)
T ss_pred             eeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec---c-cCCHHHHh
Confidence            567888 6777655566665     89999999999999999999999974   5788887554311   1 11112234


Q ss_pred             EEEEEEEecCC
Q psy16868         77 AYVEIVFDNTD   87 (109)
Q Consensus        77 ~~i~~~fq~~~   87 (109)
                      ..|+++||++.
T Consensus        79 ~~i~~~~q~~~   89 (246)
T PRK14269         79 KNVGMVFQQPN   89 (246)
T ss_pred             hhEEEEecCCc
Confidence            67999999863

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.51  E-value=1.5e-14  Score=98.76  Aligned_cols=79  Identities=23%  Similarity=0.310  Sum_probs=56.4

Q ss_pred             EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCc---ccccccchhhhhhhcCCCCc
Q psy16868          5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDES---TSLRHSDSRQALLHEGTGPR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~---~~~~~~~~~~~~~~~~~~~~   73 (109)
                      .|+++|+ +.|.+  ..++++++     |++++|+||||||||||+++|+|++.|..   |.+.+.+..   + ......
T Consensus         5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~---~-~~~~~~   80 (282)
T PRK13640          5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT---L-TAKTVW   80 (282)
T ss_pred             eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE---C-CcCCHH
Confidence            4788888 67753  23565555     89999999999999999999999998876   777654421   1 111111


Q ss_pred             eeeEEEEEEEecCC
Q psy16868         74 VVNAYVEIVFDNTD   87 (109)
Q Consensus        74 ~~~~~i~~~fq~~~   87 (109)
                      ..+..|+++||++.
T Consensus        81 ~~~~~ig~v~q~~~   94 (282)
T PRK13640         81 DIREKVGIVFQNPD   94 (282)
T ss_pred             HHHhheEEEEECHH
Confidence            22457999999874

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.50  E-value=1.1e-14  Score=106.22  Aligned_cols=79  Identities=13%  Similarity=0.179  Sum_probs=57.3

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc--CcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD--ESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      -|+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.+  ..|.+.+.+...   .........+
T Consensus         5 ~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~---~~~~~~~~~~   81 (506)
T PRK13549          5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL---QASNIRDTER   81 (506)
T ss_pred             eEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC---CCCCHHHHHH
Confidence            4889998 7787766677666     889999999999999999999999986  688887544211   1100000113


Q ss_pred             EEEEEEEecC
Q psy16868         77 AYVEIVFDNT   86 (109)
Q Consensus        77 ~~i~~~fq~~   86 (109)
                      ..|+++||++
T Consensus        82 ~~i~~v~q~~   91 (506)
T PRK13549         82 AGIAIIHQEL   91 (506)
T ss_pred             CCeEEEEecc
Confidence            5699999985

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.50  E-value=1.3e-14  Score=95.60  Aligned_cols=79  Identities=19%  Similarity=0.277  Sum_probs=56.6

Q ss_pred             EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .++++|+ +.|..  ..++++++     |++++|+||||||||||+++|+|+..+..|.+.+.+...   . .......+
T Consensus         2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~---~-~~~~~~~~   77 (221)
T cd03244           2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDI---S-KIGLHDLR   77 (221)
T ss_pred             cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEh---H-hCCHHHHh
Confidence            4678888 66753  23455555     899999999999999999999999999999987554311   1 11112224


Q ss_pred             EEEEEEEecCC
Q psy16868         77 AYVEIVFDNTD   87 (109)
Q Consensus        77 ~~i~~~fq~~~   87 (109)
                      ..++++||++.
T Consensus        78 ~~i~~~~q~~~   88 (221)
T cd03244          78 SRISIIPQDPV   88 (221)
T ss_pred             hhEEEECCCCc
Confidence            57899999864

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.50  E-value=1.2e-14  Score=93.48  Aligned_cols=75  Identities=12%  Similarity=0.110  Sum_probs=52.5

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      ++++|+ +.|    ++++++     ++.++|+|+||||||||+++|+|++.+..|.+.+.+...   .........+..+
T Consensus         5 l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~---~~~~~~~~~~~~i   77 (182)
T cd03215           5 LEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPV---TRRSPRDAIRAGI   77 (182)
T ss_pred             EEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC---CccCHHHHHhCCe
Confidence            677777 555    344443     889999999999999999999999999999987554211   1100011124568


Q ss_pred             EEEEecCC
Q psy16868         80 EIVFDNTD   87 (109)
Q Consensus        80 ~~~fq~~~   87 (109)
                      +++||++.
T Consensus        78 ~~~~q~~~   85 (182)
T cd03215          78 AYVPEDRK   85 (182)
T ss_pred             EEecCCcc
Confidence            99999753

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.50  E-value=3.3e-14  Score=95.41  Aligned_cols=81  Identities=16%  Similarity=0.308  Sum_probs=57.0

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC-----cccccccchhhhhhhcCCCCc
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE-----STSLRHSDSRQALLHEGTGPR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~   73 (109)
                      .|+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.+.     .|.+.+.+..  .........
T Consensus         4 ~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~--~~~~~~~~~   81 (251)
T PRK14249          4 KIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNEN--IYSPNLDVV   81 (251)
T ss_pred             eEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEE--ccccccChH
Confidence            4778888 6777655566665     8999999999999999999999999876     4777644421  110011111


Q ss_pred             eeeEEEEEEEecCC
Q psy16868         74 VVNAYVEIVFDNTD   87 (109)
Q Consensus        74 ~~~~~i~~~fq~~~   87 (109)
                      ..+..++++||++.
T Consensus        82 ~~~~~i~~v~q~~~   95 (251)
T PRK14249         82 NLRKRVGMVFQQPN   95 (251)
T ss_pred             HhhceEEEEecCCc
Confidence            23567999999864

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.50  E-value=8.2e-15  Score=99.37  Aligned_cols=77  Identities=18%  Similarity=0.219  Sum_probs=52.7

Q ss_pred             ece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCC-ceeeEEEEE
Q psy16868          9 HGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGP-RVVNAYVEI   81 (109)
Q Consensus         9 ~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~   81 (109)
                      .|+ +.|++..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+....-. ..... ......|++
T Consensus        28 ~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~-~~~~~~~~~~~~i~~  106 (269)
T cd03294          28 EEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAM-SRKELRELRRKKISM  106 (269)
T ss_pred             hhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcccc-ChhhhhhhhcCcEEE
Confidence            355 5566665566665     899999999999999999999999999999987554311000 00000 011346899


Q ss_pred             EEecC
Q psy16868         82 VFDNT   86 (109)
Q Consensus        82 ~fq~~   86 (109)
                      ++|++
T Consensus       107 v~q~~  111 (269)
T cd03294         107 VFQSF  111 (269)
T ss_pred             EecCc
Confidence            99975

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.50  E-value=7.4e-15  Score=97.32  Aligned_cols=98  Identities=12%  Similarity=0.134  Sum_probs=68.1

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      .|+++|. ..|..+.++.+++     ++.++|+|||||||||||+.+++...|.+|.+.+.+.   ......-....++.
T Consensus        31 li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~---~~G~~~~~~elrk~  107 (257)
T COG1119          31 LIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGR---RFGKGETIFELRKR  107 (257)
T ss_pred             eEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeee---eccCCcchHHHHHH
Confidence            4788888 7788888888887     8999999999999999999999999998888764432   11111111445677


Q ss_pred             EEEEEecCCCCCceeEEEeecceeeee
Q psy16868         79 VEIVFDNTDHRVPGFIRCRSTSVDLYR  105 (109)
Q Consensus        79 i~~~fq~~~~~~~~~~~~~~~~~~~~~  105 (109)
                      |++|...-...++.....+.....++.
T Consensus       108 IG~vS~~L~~~~~~~~~v~dvVlSg~~  134 (257)
T COG1119         108 IGLVSSELHERFRVRETVRDVVLSGFF  134 (257)
T ss_pred             hCccCHHHHhhcccccccceeeeeccc
Confidence            887764444444444445554444443

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.50  E-value=1.6e-14  Score=97.69  Aligned_cols=81  Identities=16%  Similarity=0.262  Sum_probs=56.2

Q ss_pred             EEEece-eecC---------CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCC
Q psy16868          6 VIIHGF-KSYK---------EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGT   70 (109)
Q Consensus         6 i~i~n~-~~~~---------~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~   70 (109)
                      |+++|+ +.|.         +..++++++     |++++|+|+||||||||+++|+|++.|..|.+.+.+...... ...
T Consensus         3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~-~~~   81 (265)
T TIGR02769         3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQL-DRK   81 (265)
T ss_pred             EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccc-CHH
Confidence            667777 6674         244566666     899999999999999999999999999999987554311000 000


Q ss_pred             CCceeeEEEEEEEecCC
Q psy16868         71 GPRVVNAYVEIVFDNTD   87 (109)
Q Consensus        71 ~~~~~~~~i~~~fq~~~   87 (109)
                      .....+..|+++||++.
T Consensus        82 ~~~~~~~~i~~v~q~~~   98 (265)
T TIGR02769        82 QRRAFRRDVQLVFQDSP   98 (265)
T ss_pred             HHHHHhhceEEEecChh
Confidence            00112456999999863

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.50  E-value=1.5e-14  Score=105.30  Aligned_cols=78  Identities=15%  Similarity=0.289  Sum_probs=57.6

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...   .........+..|
T Consensus         5 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i---~~~~~~~~~~~~i   81 (501)
T PRK11288          5 LSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEM---RFASTTAALAAGV   81 (501)
T ss_pred             EEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEC---CCCCHHHHHhCCE
Confidence            778888 6787666676666     889999999999999999999999999999987554311   1000111124569


Q ss_pred             EEEEecC
Q psy16868         80 EIVFDNT   86 (109)
Q Consensus        80 ~~~fq~~   86 (109)
                      +++||++
T Consensus        82 ~~v~q~~   88 (501)
T PRK11288         82 AIIYQEL   88 (501)
T ss_pred             EEEEech
Confidence            9999975

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.50  E-value=2.4e-14  Score=92.93  Aligned_cols=75  Identities=13%  Similarity=0.177  Sum_probs=56.5

Q ss_pred             EEEEece-eecCC------CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhh--ccCcccccccchhhhhhhcCC
Q psy16868          5 QVIIHGF-KSYKE------QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVL--SDESTSLRHSDSRQALLHEGT   70 (109)
Q Consensus         5 ~i~i~n~-~~~~~------~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l--~~~~~~~~~~~~~~~~~~~~~   70 (109)
                      .|+++|+ +.|..      ..++.+++     +++++|+||||||||||+++|+|++  .+..|.+.+.+....   .  
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~---~--   77 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD---K--   77 (194)
T ss_pred             EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCc---h--
Confidence            4778888 67764      44566665     8899999999999999999999999  899999875543111   1  


Q ss_pred             CCceeeEEEEEEEecC
Q psy16868         71 GPRVVNAYVEIVFDNT   86 (109)
Q Consensus        71 ~~~~~~~~i~~~fq~~   86 (109)
                        ...+..++++||++
T Consensus        78 --~~~~~~i~~~~q~~   91 (194)
T cd03213          78 --RSFRKIIGYVPQDD   91 (194)
T ss_pred             --HhhhheEEEccCcc
Confidence              12245689999885

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.50  E-value=1.3e-14  Score=96.47  Aligned_cols=76  Identities=22%  Similarity=0.268  Sum_probs=53.0

Q ss_pred             EEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          7 IIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         7 ~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      +++|+ ..|..  ..++++++     |++++|+|+||||||||+++|+|++.+..|.+.+.+....   . ......+..
T Consensus         2 ~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~---~-~~~~~~~~~   77 (237)
T cd03252           2 TFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLA---L-ADPAWLRRQ   77 (237)
T ss_pred             EEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehH---h-cCHHHHhhc
Confidence            45666 55642  23455554     8999999999999999999999999999999875543111   1 111112456


Q ss_pred             EEEEEecC
Q psy16868         79 VEIVFDNT   86 (109)
Q Consensus        79 i~~~fq~~   86 (109)
                      |+++||++
T Consensus        78 i~~~~q~~   85 (237)
T cd03252          78 VGVVLQEN   85 (237)
T ss_pred             EEEEcCCc
Confidence            89999985

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.50  E-value=1.1e-14  Score=94.03  Aligned_cols=61  Identities=21%  Similarity=0.271  Sum_probs=44.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD   87 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~   87 (109)
                      |++++|+||||||||||+++|+|++.+..|.+.+.+...  ..........+..++++||++.
T Consensus        18 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~--~~~~~~~~~~~~~i~~~~q~~~   78 (190)
T TIGR01166        18 GEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPL--DYSRKGLLERRQRVGLVFQDPD   78 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEc--cccccchHHHHhhEEEEecChh
Confidence            889999999999999999999999999999987554311  1111111122456899999863

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.49  E-value=3e-14  Score=96.98  Aligned_cols=79  Identities=18%  Similarity=0.258  Sum_probs=58.4

Q ss_pred             EEEEece-eecCC---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868          5 QVIIHGF-KSYKE---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV   75 (109)
Q Consensus         5 ~i~i~n~-~~~~~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (109)
                      -|+++|+ ..|..   ..++++++     |++++|+|+||||||||+++|+|++.+..|.+.+.+..   +. .......
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~---i~-~~~~~~~   79 (277)
T PRK13642          4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGEL---LT-AENVWNL   79 (277)
T ss_pred             eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEE---CC-cCCHHHH
Confidence            3788888 67753   22566665     89999999999999999999999999999998865531   11 1111223


Q ss_pred             eEEEEEEEecCC
Q psy16868         76 NAYVEIVFDNTD   87 (109)
Q Consensus        76 ~~~i~~~fq~~~   87 (109)
                      +..|+++||++.
T Consensus        80 ~~~i~~v~q~~~   91 (277)
T PRK13642         80 RRKIGMVFQNPD   91 (277)
T ss_pred             hcceEEEEECHH
Confidence            567999999864

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.49  E-value=1.3e-14  Score=105.43  Aligned_cols=78  Identities=18%  Similarity=0.073  Sum_probs=56.8

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+..  ..  ..........+
T Consensus         4 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~--~~--~~~~~~~~~~i   79 (490)
T PRK10938          4 LQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSH--IT--RLSFEQLQKLV   79 (490)
T ss_pred             EEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcc--cc--cCCHHHHHHHh
Confidence            788998 7887666666665     89999999999999999999999999999988743321  10  00111113458


Q ss_pred             EEEEecCC
Q psy16868         80 EIVFDNTD   87 (109)
Q Consensus        80 ~~~fq~~~   87 (109)
                      +++||++.
T Consensus        80 ~~~~q~~~   87 (490)
T PRK10938         80 SDEWQRNN   87 (490)
T ss_pred             ceeccCcc
Confidence            88898754

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.49  E-value=3.6e-14  Score=95.68  Aligned_cols=82  Identities=12%  Similarity=0.263  Sum_probs=57.4

Q ss_pred             eEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCC
Q psy16868          4 KQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGP   72 (109)
Q Consensus         4 ~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~   72 (109)
                      ..|+++|+ +.|.+..++++++     |++++|+|+||||||||+++|+|++.+     ..|.+.+.+..  +.......
T Consensus         6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~--i~~~~~~~   83 (259)
T PRK14260          6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQN--IYDPRINI   83 (259)
T ss_pred             ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEe--ccccccch
Confidence            45788898 6787655666665     899999999999999999999999875     36877754421  11001111


Q ss_pred             ceeeEEEEEEEecCC
Q psy16868         73 RVVNAYVEIVFDNTD   87 (109)
Q Consensus        73 ~~~~~~i~~~fq~~~   87 (109)
                      ...+..|+++||++.
T Consensus        84 ~~~~~~i~~v~q~~~   98 (259)
T PRK14260         84 NRLRRQIGMVFQRPN   98 (259)
T ss_pred             HhhhhheEEEecccc
Confidence            122457999999863

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.49  E-value=3e-14  Score=94.94  Aligned_cols=74  Identities=18%  Similarity=0.257  Sum_probs=53.6

Q ss_pred             EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      +++|+ ..|.+..++++++     |++++|+|+||||||||+++|+|++.+..|.+.+.+...   . ..  ......++
T Consensus         2 ~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~---~-~~--~~~~~~i~   75 (237)
T TIGR00968         2 EIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDA---T-RV--HARDRKIG   75 (237)
T ss_pred             EEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEc---C-cC--ChhhcCEE
Confidence            45565 5566555566655     889999999999999999999999999999887544211   1 11  11245789


Q ss_pred             EEEecC
Q psy16868         81 IVFDNT   86 (109)
Q Consensus        81 ~~fq~~   86 (109)
                      +++|++
T Consensus        76 ~~~q~~   81 (237)
T TIGR00968        76 FVFQHY   81 (237)
T ss_pred             EEecCh
Confidence            999875

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.49  E-value=3.1e-14  Score=93.96  Aligned_cols=72  Identities=18%  Similarity=0.223  Sum_probs=52.7

Q ss_pred             EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      +++|+ +.|....++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+..   + ...    ....++
T Consensus         2 ~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~---~-~~~----~~~~~~   73 (223)
T TIGR03740         2 ETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHP---W-TRK----DLHKIG   73 (223)
T ss_pred             EEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEe---c-ccc----ccccEE
Confidence            45666 5566555565554     88999999999999999999999999999988754421   1 111    124688


Q ss_pred             EEEecC
Q psy16868         81 IVFDNT   86 (109)
Q Consensus        81 ~~fq~~   86 (109)
                      ++||++
T Consensus        74 ~~~q~~   79 (223)
T TIGR03740        74 SLIESP   79 (223)
T ss_pred             EEcCCC
Confidence            999875

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.49  E-value=3.9e-14  Score=95.82  Aligned_cols=79  Identities=15%  Similarity=0.218  Sum_probs=55.5

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc-----cCcccccccchhhhhhhcCCCCce
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS-----DESTSLRHSDSRQALLHEGTGPRV   74 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~   74 (109)
                      |+++|+ +.|.+..++++++     |++++|+|+||||||||+++|+|++.     +..|.+.+.+..  +.........
T Consensus        11 l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~--i~~~~~~~~~   88 (264)
T PRK14243         11 LRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKN--LYAPDVDPVE   88 (264)
T ss_pred             EEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEE--ccccccChHH
Confidence            678888 6777656666665     89999999999999999999999976     257887754421  1000111112


Q ss_pred             eeEEEEEEEecC
Q psy16868         75 VNAYVEIVFDNT   86 (109)
Q Consensus        75 ~~~~i~~~fq~~   86 (109)
                      .+..|+++||++
T Consensus        89 ~~~~i~~v~q~~  100 (264)
T PRK14243         89 VRRRIGMVFQKP  100 (264)
T ss_pred             HhhhEEEEccCC
Confidence            245699999985

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.49  E-value=3.6e-14  Score=95.72  Aligned_cols=79  Identities=15%  Similarity=0.258  Sum_probs=57.8

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCC-----CCce
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGT-----GPRV   74 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~   74 (109)
                      +.++|+ ++|++..++++++     +++++|+|+||||||||+++|+|+..+..|.+...+.   ....+.     ....
T Consensus        11 i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~---~~~~g~~~~~~~~~~   87 (257)
T PRK14246         11 FNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGK---VLYFGKDIFQIDAIK   87 (257)
T ss_pred             eeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCE---EEECCcccccCCHHH
Confidence            678888 7888777677766     8899999999999999999999999998887653332   111111     1112


Q ss_pred             eeEEEEEEEecCC
Q psy16868         75 VNAYVEIVFDNTD   87 (109)
Q Consensus        75 ~~~~i~~~fq~~~   87 (109)
                      .+..+++++|++.
T Consensus        88 ~~~~i~~~~q~~~  100 (257)
T PRK14246         88 LRKEVGMVFQQPN  100 (257)
T ss_pred             HhcceEEEccCCc
Confidence            3567999999864

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.49  E-value=2.5e-14  Score=94.35  Aligned_cols=79  Identities=16%  Similarity=0.234  Sum_probs=55.2

Q ss_pred             EEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCC--Cc
Q psy16868          6 VIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTG--PR   73 (109)
Q Consensus         6 i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~--~~   73 (109)
                      ++++|+ ..|.+    ..++++++     |++++|+|+||||||||+++|+|++.+..|.+.+.+...   .....  ..
T Consensus         2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~---~~~~~~~~~   78 (220)
T TIGR02982         2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQEL---YGASEKELV   78 (220)
T ss_pred             EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEh---HhcCHhHHH
Confidence            456666 55653    34566655     889999999999999999999999999999987544311   11100  01


Q ss_pred             eeeEEEEEEEecCC
Q psy16868         74 VVNAYVEIVFDNTD   87 (109)
Q Consensus        74 ~~~~~i~~~fq~~~   87 (109)
                      ..++.|+++||++.
T Consensus        79 ~~~~~i~~~~q~~~   92 (220)
T TIGR02982        79 QLRRNIGYIFQAHN   92 (220)
T ss_pred             HHHhheEEEcCChh
Confidence            22467999999863

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.49  E-value=4e-14  Score=96.79  Aligned_cols=79  Identities=15%  Similarity=0.315  Sum_probs=56.6

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc-----cCcccccccchhhhhhhcCCCCce
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS-----DESTSLRHSDSRQALLHEGTGPRV   74 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~   74 (109)
                      |+++|+ +.|.+..++++++     |++++|+|+||||||||+++|+|++.     +..|.+.+.+...  .........
T Consensus        40 l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i--~~~~~~~~~  117 (285)
T PRK14254         40 IEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNV--YDADVDPVA  117 (285)
T ss_pred             EEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEc--cccccchHh
Confidence            678888 6777666666665     89999999999999999999999986     5788887554311  100111112


Q ss_pred             eeEEEEEEEecC
Q psy16868         75 VNAYVEIVFDNT   86 (109)
Q Consensus        75 ~~~~i~~~fq~~   86 (109)
                      .+..++++||++
T Consensus       118 ~~~~i~~v~q~~  129 (285)
T PRK14254        118 LRRRIGMVFQKP  129 (285)
T ss_pred             hhccEEEEecCC
Confidence            346799999986

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.49  E-value=2e-14  Score=97.42  Aligned_cols=81  Identities=20%  Similarity=0.303  Sum_probs=57.4

Q ss_pred             EEEece-eecC---------CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCC
Q psy16868          6 VIIHGF-KSYK---------EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGT   70 (109)
Q Consensus         6 i~i~n~-~~~~---------~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~   70 (109)
                      |+++|+ +.|.         +..++++++     |++++|+||||||||||+++|+|++.+.+|.+.+.+...... ...
T Consensus         4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~-~~~   82 (268)
T PRK10419          4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKL-NRA   82 (268)
T ss_pred             EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-Chh
Confidence            778888 6776         245566665     889999999999999999999999999999987554211000 000


Q ss_pred             CCceeeEEEEEEEecCC
Q psy16868         71 GPRVVNAYVEIVFDNTD   87 (109)
Q Consensus        71 ~~~~~~~~i~~~fq~~~   87 (109)
                      .....+..++++||++.
T Consensus        83 ~~~~~~~~i~~v~q~~~   99 (268)
T PRK10419         83 QRKAFRRDIQMVFQDSI   99 (268)
T ss_pred             HHHHHHhcEEEEEcChh
Confidence            00112457999999864

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.49  E-value=2.8e-14  Score=97.15  Aligned_cols=80  Identities=14%  Similarity=0.218  Sum_probs=56.7

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCCc
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGPR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~   73 (109)
                      .|+++|+ +.|.+..++++++     +++++|+|+||||||||+++|+|++.|     ..|.+.+.+...   .......
T Consensus        21 ~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i---~~~~~~~   97 (276)
T PRK14271         21 AMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSI---FNYRDVL   97 (276)
T ss_pred             EEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEc---cccchhH
Confidence            3678888 7787666666665     899999999999999999999999885     578776544211   0100111


Q ss_pred             eeeEEEEEEEecCC
Q psy16868         74 VVNAYVEIVFDNTD   87 (109)
Q Consensus        74 ~~~~~i~~~fq~~~   87 (109)
                      ..+..|+++||++.
T Consensus        98 ~~~~~i~~v~q~~~  111 (276)
T PRK14271         98 EFRRRVGMLFQRPN  111 (276)
T ss_pred             HHhhheEEeccCCc
Confidence            22457999999853

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.49  E-value=6.8e-14  Score=103.11  Aligned_cols=68  Identities=16%  Similarity=0.166  Sum_probs=56.0

Q ss_pred             EEEEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          5 QVIIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         5 ~i~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      -|+++|+ +.|. +..++++++     |++++|+||||||||||+++|+|++.|..|.+.+..               ..
T Consensus         6 ~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~---------------~~   70 (556)
T PRK11819          6 IYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP---------------GI   70 (556)
T ss_pred             EEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC---------------CC
Confidence            5889999 7887 566677776     899999999999999999999999999999876211               13


Q ss_pred             EEEEEEecCC
Q psy16868         78 YVEIVFDNTD   87 (109)
Q Consensus        78 ~i~~~fq~~~   87 (109)
                      .|++++|++.
T Consensus        71 ~i~~v~Q~~~   80 (556)
T PRK11819         71 KVGYLPQEPQ   80 (556)
T ss_pred             EEEEEecCCC
Confidence            5899999863

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.49  E-value=3e-14  Score=96.02  Aligned_cols=81  Identities=15%  Similarity=0.240  Sum_probs=56.7

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCCc
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGPR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~   73 (109)
                      .|+++|+ +.|.+..++++++     |++++|+|+||||||||+++|+|++.+     ..|.+.+.+...  ........
T Consensus        12 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i--~~~~~~~~   89 (258)
T PRK14268         12 QIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDI--YEPDVDVV   89 (258)
T ss_pred             eEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEc--ccccchHH
Confidence            4778888 6777655566665     889999999999999999999999874     688877544211  00111111


Q ss_pred             eeeEEEEEEEecCC
Q psy16868         74 VVNAYVEIVFDNTD   87 (109)
Q Consensus        74 ~~~~~i~~~fq~~~   87 (109)
                      ..+..++++||++.
T Consensus        90 ~~~~~i~~v~q~~~  103 (258)
T PRK14268         90 ELRKNVGMVFQKPN  103 (258)
T ss_pred             HHhhhEEEEecCCc
Confidence            22456999999763

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.49  E-value=3.1e-14  Score=94.03  Aligned_cols=82  Identities=13%  Similarity=0.150  Sum_probs=54.9

Q ss_pred             EEEece-eecCC-------CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchh--hhhhhcCC
Q psy16868          6 VIIHGF-KSYKE-------QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSR--QALLHEGT   70 (109)
Q Consensus         6 i~i~n~-~~~~~-------~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~--~~~~~~~~   70 (109)
                      |+++|+ +.|..       ..++++++     |++++|+|+||||||||+++|+|++.+..|.+.+.+..  .+......
T Consensus         2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~   81 (224)
T TIGR02324         2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP   81 (224)
T ss_pred             EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence            567777 66742       24566665     89999999999999999999999999999988754210  01110000


Q ss_pred             CC--ceeeEEEEEEEecCC
Q psy16868         71 GP--RVVNAYVEIVFDNTD   87 (109)
Q Consensus        71 ~~--~~~~~~i~~~fq~~~   87 (109)
                      ..  ......++++||++.
T Consensus        82 ~~~~~~~~~~i~~~~q~~~  100 (224)
T TIGR02324        82 REVLEVRRKTIGYVSQFLR  100 (224)
T ss_pred             HHHHHHHhcceEEEecccc
Confidence            00  011356899999864

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.49  E-value=1.7e-14  Score=95.91  Aligned_cols=76  Identities=17%  Similarity=0.197  Sum_probs=52.9

Q ss_pred             EEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          7 IIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         7 ~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      +++|+ ..|. ...++++++     |++++|+||||||||||+++|+|++.+..|.+.+.+....    .......+..+
T Consensus         2 ~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~----~~~~~~~~~~i   77 (236)
T cd03253           2 EFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIR----EVTLDSLRRAI   77 (236)
T ss_pred             EEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhh----hCCHHHHHhhE
Confidence            45666 5564 333455554     8999999999999999999999999999999875542111    11111224568


Q ss_pred             EEEEecC
Q psy16868         80 EIVFDNT   86 (109)
Q Consensus        80 ~~~fq~~   86 (109)
                      +++||++
T Consensus        78 ~~~~q~~   84 (236)
T cd03253          78 GVVPQDT   84 (236)
T ss_pred             EEECCCC
Confidence            8888885

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.49  E-value=4.5e-14  Score=94.69  Aligned_cols=81  Identities=15%  Similarity=0.251  Sum_probs=56.0

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc--c---CcccccccchhhhhhhcCCCCc
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS--D---ESTSLRHSDSRQALLHEGTGPR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~--~---~~~~~~~~~~~~~~~~~~~~~~   73 (109)
                      -|+++|+ ..|.+..++++++     |++++|+||||||||||+++|+|+..  |   ..|.+.+.+...  ........
T Consensus         5 ~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~--~~~~~~~~   82 (252)
T PRK14239          5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI--YSPRTDTV   82 (252)
T ss_pred             eEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEEC--cCcccchH
Confidence            4788888 6787655566665     88999999999999999999999853  5   378877554211  10011111


Q ss_pred             eeeEEEEEEEecCC
Q psy16868         74 VVNAYVEIVFDNTD   87 (109)
Q Consensus        74 ~~~~~i~~~fq~~~   87 (109)
                      ..+..++++||++.
T Consensus        83 ~~~~~i~~v~q~~~   96 (252)
T PRK14239         83 DLRKEIGMVFQQPN   96 (252)
T ss_pred             hhhhcEEEEecCCc
Confidence            22457999999863

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.49  E-value=1.5e-14  Score=96.31  Aligned_cols=76  Identities=13%  Similarity=0.191  Sum_probs=52.8

Q ss_pred             EEece-eecCC---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          7 IIHGF-KSYKE---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         7 ~i~n~-~~~~~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      +++|+ ..|.+   ..++++++     |++++|+|+||||||||+++|+|++.+..|.+.+.+...   . .......+.
T Consensus         2 ~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~---~-~~~~~~~~~   77 (238)
T cd03249           2 EFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDI---R-DLNLRWLRS   77 (238)
T ss_pred             eEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEeh---h-hcCHHHHHh
Confidence            46666 55643   23455544     899999999999999999999999999999987555311   1 111111235


Q ss_pred             EEEEEEecC
Q psy16868         78 YVEIVFDNT   86 (109)
Q Consensus        78 ~i~~~fq~~   86 (109)
                      .++++||++
T Consensus        78 ~i~~~~q~~   86 (238)
T cd03249          78 QIGLVSQEP   86 (238)
T ss_pred             hEEEECCch
Confidence            689999875

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.49  E-value=2.6e-14  Score=96.45  Aligned_cols=83  Identities=13%  Similarity=0.239  Sum_probs=57.1

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC---cccccccchhhhhhh-cCCCCce
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE---STSLRHSDSRQALLH-EGTGPRV   74 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~---~~~~~~~~~~~~~~~-~~~~~~~   74 (109)
                      -|+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.|.   .|.+.+.+....... .......
T Consensus         4 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~   83 (262)
T PRK09984          4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRK   83 (262)
T ss_pred             EEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHH
Confidence            4788888 6787666676666     8999999999999999999999999865   477775543110000 0001112


Q ss_pred             eeEEEEEEEecCC
Q psy16868         75 VNAYVEIVFDNTD   87 (109)
Q Consensus        75 ~~~~i~~~fq~~~   87 (109)
                      .+..++++||++.
T Consensus        84 ~~~~i~~~~q~~~   96 (262)
T PRK09984         84 SRANTGYIFQQFN   96 (262)
T ss_pred             HHhheEEEccccc
Confidence            2456899999863

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.48  E-value=1.2e-14  Score=94.17  Aligned_cols=73  Identities=21%  Similarity=0.333  Sum_probs=55.4

Q ss_pred             EEEece-eecCCCe-eEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          6 VIIHGF-KSYKEQT-VVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         6 i~i~n~-~~~~~~~-~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      +++.++ ++|++.. ++.+++     |++++|.|||||||||+|++|+.++.|++|.+..++-    .. ...+...+..
T Consensus         2 l~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~----d~-~~~p~~vrr~   76 (245)
T COG4555           2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGV----DT-VRDPSFVRRK   76 (245)
T ss_pred             eeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeec----cc-ccChHHHhhh
Confidence            567777 7888753 455554     8999999999999999999999999999999884431    11 1223345778


Q ss_pred             EEEEE
Q psy16868         79 VEIVF   83 (109)
Q Consensus        79 i~~~f   83 (109)
                      |+++|
T Consensus        77 IGVl~   81 (245)
T COG4555          77 IGVLF   81 (245)
T ss_pred             cceec
Confidence            99998

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.48  E-value=4.4e-14  Score=93.86  Aligned_cols=75  Identities=16%  Similarity=0.157  Sum_probs=53.7

Q ss_pred             EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      .++|+ .+|.+..++++++     |++++|+|+||||||||+++|+|.+.+..|.+.+.+...   . ...  .....++
T Consensus         2 ~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~---~-~~~--~~~~~i~   75 (232)
T cd03300           2 ELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDI---T-NLP--PHKRPVN   75 (232)
T ss_pred             EEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEc---C-cCC--hhhcceE
Confidence            45666 5565555565554     889999999999999999999999999999887544211   1 111  1145689


Q ss_pred             EEEecCC
Q psy16868         81 IVFDNTD   87 (109)
Q Consensus        81 ~~fq~~~   87 (109)
                      +++|++.
T Consensus        76 ~~~q~~~   82 (232)
T cd03300          76 TVFQNYA   82 (232)
T ss_pred             EEecccc
Confidence            9998853

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.48  E-value=1.8e-14  Score=102.41  Aligned_cols=68  Identities=18%  Similarity=0.191  Sum_probs=47.2

Q ss_pred             eEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCC-ceeeEEEEEEEecCC
Q psy16868         19 VVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGP-RVVNAYVEIVFDNTD   87 (109)
Q Consensus        19 ~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~fq~~~   87 (109)
                      ++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+....-. ..... ...+..++++||++.
T Consensus        43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~-~~~~l~~~~~~~igyv~Q~~~  116 (400)
T PRK10070         43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKI-SDAELREVRRKKIAMVFQSFA  116 (400)
T ss_pred             EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcC-CHHHHHHHHhCCEEEEECCCc
Confidence            455554     899999999999999999999999999999987554311000 00000 011346999999863

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.48  E-value=6.4e-14  Score=93.97  Aligned_cols=78  Identities=15%  Similarity=0.157  Sum_probs=54.2

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHh--hccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFV--LSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      |+++|+ ..|.+..++.+++     |++++|+|+||||||||+++|+|+  +.+..|.+.+.+...   ...........
T Consensus         8 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~---~~~~~~~~~~~   84 (252)
T CHL00131          8 LEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI---LDLEPEERAHL   84 (252)
T ss_pred             EEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc---ccCChhhhhee
Confidence            788888 6776655666665     899999999999999999999998  467889887544211   11011111123


Q ss_pred             EEEEEEecC
Q psy16868         78 YVEIVFDNT   86 (109)
Q Consensus        78 ~i~~~fq~~   86 (109)
                      .++++||++
T Consensus        85 ~~~~~~q~~   93 (252)
T CHL00131         85 GIFLAFQYP   93 (252)
T ss_pred             eEEEEeccc
Confidence            477888875

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.47  E-value=3e-14  Score=95.99  Aligned_cols=78  Identities=17%  Similarity=0.278  Sum_probs=57.0

Q ss_pred             EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .|+++|+ ..|..  ..++++++     |++++|+|+||||||||+++|+|++.+..|.+.+.+..  +.  .......+
T Consensus        19 ~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~--i~--~~~~~~~~   94 (257)
T cd03288          19 EIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGID--IS--KLPLHTLR   94 (257)
T ss_pred             eEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEE--hh--hCCHHHHh
Confidence            5788888 67764  34566655     89999999999999999999999999999998755431  11  11111224


Q ss_pred             EEEEEEEecC
Q psy16868         77 AYVEIVFDNT   86 (109)
Q Consensus        77 ~~i~~~fq~~   86 (109)
                      ..|++++|++
T Consensus        95 ~~i~~v~q~~  104 (257)
T cd03288          95 SRLSIILQDP  104 (257)
T ss_pred             hhEEEECCCC
Confidence            5689999886

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.47  E-value=7.5e-14  Score=94.26  Aligned_cols=83  Identities=16%  Similarity=0.299  Sum_probs=56.5

Q ss_pred             eeEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC-----cccccccchhhhhhhcCCC
Q psy16868          3 IKQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE-----STSLRHSDSRQALLHEGTG   71 (109)
Q Consensus         3 i~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~-----~~~~~~~~~~~~~~~~~~~   71 (109)
                      |..|+++|+ +.|.+..++++++     |++++|+|+||||||||+++|+|++.+.     .|.+.+.+..  +......
T Consensus         5 ~~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~--i~~~~~~   82 (261)
T PRK14258          5 IPAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQN--IYERRVN   82 (261)
T ss_pred             cceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEE--hhccccc
Confidence            456889998 6786655566665     8999999999999999999999999874     4555433321  1000111


Q ss_pred             CceeeEEEEEEEecCC
Q psy16868         72 PRVVNAYVEIVFDNTD   87 (109)
Q Consensus        72 ~~~~~~~i~~~fq~~~   87 (109)
                      ....+..++++||++.
T Consensus        83 ~~~~~~~i~~~~q~~~   98 (261)
T PRK14258         83 LNRLRRQVSMVHPKPN   98 (261)
T ss_pred             hHHhhccEEEEecCCc
Confidence            1122456899998753

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.47  E-value=4.9e-14  Score=96.39  Aligned_cols=81  Identities=22%  Similarity=0.345  Sum_probs=56.0

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc-----cCcccccccchhhhhhhcCCCCc
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS-----DESTSLRHSDSRQALLHEGTGPR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~   73 (109)
                      .|+++|+ ..|.+..++++++     |++++|+|+||||||||+++|+|+..     +..|.+.+.+...  ........
T Consensus        39 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i--~~~~~~~~  116 (286)
T PRK14275         39 HVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDI--YGKFTDEV  116 (286)
T ss_pred             EEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEh--hhcccchH
Confidence            3678888 6776655566655     89999999999999999999999864     3788887554311  10001111


Q ss_pred             eeeEEEEEEEecCC
Q psy16868         74 VVNAYVEIVFDNTD   87 (109)
Q Consensus        74 ~~~~~i~~~fq~~~   87 (109)
                      ..+..++++||++.
T Consensus       117 ~~~~~i~~v~q~~~  130 (286)
T PRK14275        117 LLRKKIGMVFQKPN  130 (286)
T ss_pred             HhhhcEEEECCCCC
Confidence            22457999999863

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.47  E-value=2.4e-14  Score=104.23  Aligned_cols=79  Identities=19%  Similarity=0.239  Sum_probs=55.6

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc--CcccccccchhhhhhhcCCCCceeeE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD--ESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      |+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.+  ..|.+.+.+..   +.........+.
T Consensus         2 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~---~~~~~~~~~~~~   78 (500)
T TIGR02633         2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSP---LKASNIRDTERA   78 (500)
T ss_pred             EEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEE---CCCCCHHHHHhC
Confidence            577888 6787666666665     889999999999999999999999876  68887754421   111000001134


Q ss_pred             EEEEEEecCC
Q psy16868         78 YVEIVFDNTD   87 (109)
Q Consensus        78 ~i~~~fq~~~   87 (109)
                      .|+++||++.
T Consensus        79 ~i~~v~q~~~   88 (500)
T TIGR02633        79 GIVIIHQELT   88 (500)
T ss_pred             CEEEEeeccc
Confidence            6999999863

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.47  E-value=1.5e-14  Score=99.49  Aligned_cols=69  Identities=22%  Similarity=0.260  Sum_probs=49.3

Q ss_pred             cCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868         14 YKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD   87 (109)
Q Consensus        14 ~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~   87 (109)
                      |++..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...   ..  .....+..|++++|++.
T Consensus         3 y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~---~~--~~~~~~~~i~~~~q~~~   76 (302)
T TIGR01188         3 YGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV---VR--EPRKVRRSIGIVPQYAS   76 (302)
T ss_pred             eCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc---cc--CHHHHHhhcEEecCCCC
Confidence            44444455444     889999999999999999999999999999988554311   11  11122456999999753

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.47  E-value=7.3e-14  Score=93.83  Aligned_cols=81  Identities=14%  Similarity=0.237  Sum_probs=56.2

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCCc
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGPR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~   73 (109)
                      .|+++|+ ..|.+..++++++     |++++|+||||||||||+++|+|++.+     ..|.+.+.+...  ........
T Consensus         6 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~--~~~~~~~~   83 (253)
T PRK14261          6 ILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENI--MDSGADVV   83 (253)
T ss_pred             eEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEc--cccccchh
Confidence            4778888 6787666666665     889999999999999999999998753     368777544211  11000111


Q ss_pred             eeeEEEEEEEecCC
Q psy16868         74 VVNAYVEIVFDNTD   87 (109)
Q Consensus        74 ~~~~~i~~~fq~~~   87 (109)
                      ..+..|+++||++.
T Consensus        84 ~~~~~i~~~~q~~~   97 (253)
T PRK14261         84 ALRRKIGMVFQRPN   97 (253)
T ss_pred             hhhceEEEEecCCc
Confidence            22467999999863

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.47  E-value=5.6e-14  Score=91.05  Aligned_cols=74  Identities=7%  Similarity=0.076  Sum_probs=53.8

Q ss_pred             EEEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc--cCcccccccchhhhhhhcCCCC
Q psy16868          5 QVIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS--DESTSLRHSDSRQALLHEGTGP   72 (109)
Q Consensus         5 ~i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~--~~~~~~~~~~~~~~~~~~~~~~   72 (109)
                      .|+++|+ ..|.+    ..++++++     +++++|+||||||||||+++|+|+..  +..|.+.+.+...   .     
T Consensus         3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~---~-----   74 (192)
T cd03232           3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL---D-----   74 (192)
T ss_pred             EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh---H-----
Confidence            4678888 67754    44566665     88999999999999999999999863  6788877544311   1     


Q ss_pred             ceeeEEEEEEEecC
Q psy16868         73 RVVNAYVEIVFDNT   86 (109)
Q Consensus        73 ~~~~~~i~~~fq~~   86 (109)
                      ...+..+++++|++
T Consensus        75 ~~~~~~i~~~~q~~   88 (192)
T cd03232          75 KNFQRSTGYVEQQD   88 (192)
T ss_pred             HHhhhceEEecccC
Confidence            11245689999875

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.47  E-value=8.2e-14  Score=102.12  Aligned_cols=66  Identities=15%  Similarity=0.226  Sum_probs=53.3

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|+ +.|.+..++++++     |++++|+|||||||||||++|+|++.|..|.+.+.+               ...|
T Consensus         2 l~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~---------------~~~i   66 (530)
T PRK15064          2 LSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDP---------------NERL   66 (530)
T ss_pred             EEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC---------------CCEE
Confidence            677888 6787666677766     899999999999999999999999999889876321               1348


Q ss_pred             EEEEecC
Q psy16868         80 EIVFDNT   86 (109)
Q Consensus        80 ~~~fq~~   86 (109)
                      ++++|.+
T Consensus        67 ~~~~q~~   73 (530)
T PRK15064         67 GKLRQDQ   73 (530)
T ss_pred             EEEeccC
Confidence            8888875

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.47  E-value=6e-14  Score=91.82  Aligned_cols=74  Identities=14%  Similarity=0.132  Sum_probs=54.8

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      ++++|+ +.|.+..++++++     |++++|+|+||||||||+++|+|+..+..|.+.+.+....    . . . .+..+
T Consensus         3 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~----~-~-~-~~~~~   75 (207)
T PRK13539          3 LEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDID----D-P-D-VAEAC   75 (207)
T ss_pred             EEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCc----c-h-h-hHhhc
Confidence            678888 6777665666665     8999999999999999999999999999999875543111    0 0 1 24457


Q ss_pred             EEEEecC
Q psy16868         80 EIVFDNT   86 (109)
Q Consensus        80 ~~~fq~~   86 (109)
                      ++++|.+
T Consensus        76 ~~~~~~~   82 (207)
T PRK13539         76 HYLGHRN   82 (207)
T ss_pred             EEecCCC
Confidence            7777653

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.47  E-value=7.7e-14  Score=93.63  Aligned_cols=80  Identities=13%  Similarity=0.217  Sum_probs=55.5

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc--c---CcccccccchhhhhhhcCCCCce
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS--D---ESTSLRHSDSRQALLHEGTGPRV   74 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~--~---~~~~~~~~~~~~~~~~~~~~~~~   74 (109)
                      |+++|+ +.|.+..++++++     |++++|+|+||||||||+++|+|+..  +   ..|.+.+.+...  .........
T Consensus         6 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~--~~~~~~~~~   83 (252)
T PRK14255          6 ITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNI--YAPNEDVVQ   83 (252)
T ss_pred             EEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEc--ccccccHHH
Confidence            678888 6787655676665     88999999999999999999999864  3   478877544311  000111112


Q ss_pred             eeEEEEEEEecCC
Q psy16868         75 VNAYVEIVFDNTD   87 (109)
Q Consensus        75 ~~~~i~~~fq~~~   87 (109)
                      .+..|++++|++.
T Consensus        84 ~~~~i~~~~q~~~   96 (252)
T PRK14255         84 LRKQVGMVFQQPN   96 (252)
T ss_pred             hcCeEEEEECCCc
Confidence            2457999999853

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.47  E-value=6.8e-14  Score=95.00  Aligned_cols=80  Identities=14%  Similarity=0.238  Sum_probs=56.6

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCCc
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGPR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~   73 (109)
                      .|+++|+ ..|.+..++++++     |++++|+|+||||||||+++|+|++.+     ..|.+.+.+..  +........
T Consensus        25 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~--i~~~~~~~~  102 (272)
T PRK14236         25 ALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQN--IYDKKVDVA  102 (272)
T ss_pred             EEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEE--CcccccCHH
Confidence            4778888 6776655566655     899999999999999999999999873     68887754431  111111111


Q ss_pred             eeeEEEEEEEecC
Q psy16868         74 VVNAYVEIVFDNT   86 (109)
Q Consensus        74 ~~~~~i~~~fq~~   86 (109)
                      ..+..+++++|++
T Consensus       103 ~~~~~i~~v~q~~  115 (272)
T PRK14236        103 ELRRRVGMVFQRP  115 (272)
T ss_pred             HHhccEEEEecCC
Confidence            2356799999875

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.47  E-value=6.1e-14  Score=95.38  Aligned_cols=81  Identities=16%  Similarity=0.177  Sum_probs=56.0

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCCc
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGPR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~   73 (109)
                      .|+++|+ ..|.+..++++++     |++++|+|+||||||||+++|+|++.+     ..|.+.+.+...  ........
T Consensus        20 ~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l--~~~~~~~~   97 (274)
T PRK14265         20 VFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNI--YDSQINSV   97 (274)
T ss_pred             eEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEec--ccccchhH
Confidence            4778888 6777655666665     899999999999999999999999863     468776544211  00001111


Q ss_pred             eeeEEEEEEEecCC
Q psy16868         74 VVNAYVEIVFDNTD   87 (109)
Q Consensus        74 ~~~~~i~~~fq~~~   87 (109)
                      ..+..|+++||++.
T Consensus        98 ~~~~~i~~v~q~~~  111 (274)
T PRK14265         98 KLRRQVGMVFQRPN  111 (274)
T ss_pred             HHhhcEEEEccCCc
Confidence            22467999999863

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.47  E-value=8.5e-14  Score=102.05  Aligned_cols=68  Identities=16%  Similarity=0.346  Sum_probs=55.1

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      .|+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+               ...
T Consensus       319 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~---------------~~~  383 (530)
T PRK15064        319 ALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE---------------NAN  383 (530)
T ss_pred             eEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC---------------ceE
Confidence            4788898 7787666666665     899999999999999999999999999999876321               246


Q ss_pred             EEEEEecCC
Q psy16868         79 VEIVFDNTD   87 (109)
Q Consensus        79 i~~~fq~~~   87 (109)
                      +++++|++.
T Consensus       384 i~~~~q~~~  392 (530)
T PRK15064        384 IGYYAQDHA  392 (530)
T ss_pred             EEEEccccc
Confidence            889998754

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=99.47  E-value=2.9e-14  Score=91.86  Aligned_cols=49  Identities=37%  Similarity=0.659  Sum_probs=40.8

Q ss_pred             EEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCccc
Q psy16868          5 QVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTS   55 (109)
Q Consensus         5 ~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~   55 (109)
                      +|+++||++|.+.. + +|++++++|+||||+||||+++||.+++++....
T Consensus         1 ~i~i~nf~~~~~~~-i-~f~~g~~vi~G~Ng~GKStil~ai~~~L~~~~~~   49 (202)
T PF13476_consen    1 KIHIKNFRSFKDLE-I-DFSPGLNVIYGPNGSGKSTILEAIRYALGGQSSR   49 (202)
T ss_dssp             EEEEEEETTEEEEE-E-E--SEEEEEEESTTSSHHHHHHHHHHHHHSS-TT
T ss_pred             CEEEEEeCCCcceE-E-EcCCCcEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence            58999999997766 6 8888999999999999999999999999876543

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.47  E-value=7.6e-14  Score=93.56  Aligned_cols=79  Identities=11%  Similarity=0.260  Sum_probs=55.2

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc--c---CcccccccchhhhhhhcCCCCce
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS--D---ESTSLRHSDSRQALLHEGTGPRV   74 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~--~---~~~~~~~~~~~~~~~~~~~~~~~   74 (109)
                      ++++|+ ..|.+..++++++     |++++|+|+||||||||+++|+|++.  +   ..|.+.+.+...  .........
T Consensus         4 l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i--~~~~~~~~~   81 (250)
T PRK14266          4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDI--YDPAVDVVE   81 (250)
T ss_pred             EEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEc--ccccccHHH
Confidence            778888 6777655666665     89999999999999999999999875  3   678877554311  000011112


Q ss_pred             eeEEEEEEEecC
Q psy16868         75 VNAYVEIVFDNT   86 (109)
Q Consensus        75 ~~~~i~~~fq~~   86 (109)
                      .+..++++||++
T Consensus        82 ~~~~i~~~~q~~   93 (250)
T PRK14266         82 LRKKVGMVFQKP   93 (250)
T ss_pred             HhhheEEEecCC
Confidence            245799999885

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.47  E-value=8.8e-14  Score=93.35  Aligned_cols=80  Identities=16%  Similarity=0.272  Sum_probs=54.7

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc-----cCcccccccchhhhhhhcCCCCc
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS-----DESTSLRHSDSRQALLHEGTGPR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~   73 (109)
                      .-+++|+ ..|.+..++++++     |++++|+|+||||||||+++|+|+..     +..|.+.+.+..  +........
T Consensus         5 ~~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~--i~~~~~~~~   82 (251)
T PRK14244          5 HASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGID--VYSVDTNVV   82 (251)
T ss_pred             EEEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEe--hHhcccchH
Confidence            3456777 5676555566665     89999999999999999999999985     357887754431  111111111


Q ss_pred             eeeEEEEEEEecC
Q psy16868         74 VVNAYVEIVFDNT   86 (109)
Q Consensus        74 ~~~~~i~~~fq~~   86 (109)
                      ..+..++++||++
T Consensus        83 ~~~~~i~~v~q~~   95 (251)
T PRK14244         83 LLRAKVGMVFQKP   95 (251)
T ss_pred             HHhhhEEEEecCc
Confidence            2245799999985

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.47  E-value=8.8e-14  Score=102.42  Aligned_cols=67  Identities=16%  Similarity=0.181  Sum_probs=54.4

Q ss_pred             EEEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          6 VIIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         6 i~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      ++++|+ +.|. +..++++++     |++++|+|||||||||||++|+|++.|..|.+.+..               ...
T Consensus         5 i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~---------------~~~   69 (552)
T TIGR03719         5 YTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP---------------GIK   69 (552)
T ss_pred             EEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC---------------CCE
Confidence            788898 7786 555676666     889999999999999999999999999999876211               246


Q ss_pred             EEEEEecCC
Q psy16868         79 VEIVFDNTD   87 (109)
Q Consensus        79 i~~~fq~~~   87 (109)
                      |++++|++.
T Consensus        70 i~~v~Q~~~   78 (552)
T TIGR03719        70 VGYLPQEPQ   78 (552)
T ss_pred             EEEEeccCC
Confidence            899999863

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.46  E-value=3.6e-14  Score=103.87  Aligned_cols=77  Identities=12%  Similarity=0.229  Sum_probs=60.4

Q ss_pred             EEEEece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          5 QVIIHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         5 ~i~i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      .|+++|+ .+|.+ ..++++++     |+.++|+||||||||||+++|++++.|..|.+.+++....    .. ....+.
T Consensus       334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~----~~-~~~lr~  408 (529)
T TIGR02868       334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVS----SL-QDELRR  408 (529)
T ss_pred             eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhh----hH-HHHHHh
Confidence            5888888 67865 34677776     8999999999999999999999999999999986653221    11 233467


Q ss_pred             EEEEEEecC
Q psy16868         78 YVEIVFDNT   86 (109)
Q Consensus        78 ~i~~~fq~~   86 (109)
                      .|++++|++
T Consensus       409 ~i~~V~Q~~  417 (529)
T TIGR02868       409 RISVFAQDA  417 (529)
T ss_pred             heEEEccCc
Confidence            899999987

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.46  E-value=6.6e-14  Score=91.37  Aligned_cols=77  Identities=14%  Similarity=0.138  Sum_probs=55.1

Q ss_pred             EEEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc---cCcccccccchhhhhhhcCCC
Q psy16868          5 QVIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS---DESTSLRHSDSRQALLHEGTG   71 (109)
Q Consensus         5 ~i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~---~~~~~~~~~~~~~~~~~~~~~   71 (109)
                      .+.++|+ +.|..    ..++++++     +++++|+|+||||||||+++|+|++.   +..|.+.+.+....   . . 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~---~-~-   77 (202)
T cd03233           3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYK---E-F-   77 (202)
T ss_pred             eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECc---c-c-
Confidence            4677887 66753    34565554     88999999999999999999999998   78898875442111   0 0 


Q ss_pred             CceeeEEEEEEEecC
Q psy16868         72 PRVVNAYVEIVFDNT   86 (109)
Q Consensus        72 ~~~~~~~i~~~fq~~   86 (109)
                      ....+..+++++|++
T Consensus        78 ~~~~~~~i~~~~q~~   92 (202)
T cd03233          78 AEKYPGEIIYVSEED   92 (202)
T ss_pred             hhhhcceEEEEeccc
Confidence            112345789999875

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.46  E-value=7.6e-14  Score=93.61  Aligned_cols=81  Identities=16%  Similarity=0.254  Sum_probs=54.9

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhh---cc--CcccccccchhhhhhhcCCCCc
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVL---SD--ESTSLRHSDSRQALLHEGTGPR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l---~~--~~~~~~~~~~~~~~~~~~~~~~   73 (109)
                      .|+++|+ +.|.+..++++++     |++++|+|+||||||||+++|+|+.   ++  ..|.+.+.+..  +........
T Consensus         3 ~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~--~~~~~~~~~   80 (250)
T PRK14245          3 KIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRN--IYDKGVQVD   80 (250)
T ss_pred             EEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEe--cccccccHH
Confidence            3678888 6777666666655     8999999999999999999999973   33  36887754421  111111111


Q ss_pred             eeeEEEEEEEecCC
Q psy16868         74 VVNAYVEIVFDNTD   87 (109)
Q Consensus        74 ~~~~~i~~~fq~~~   87 (109)
                      ..+..|+++||++.
T Consensus        81 ~~~~~i~~v~q~~~   94 (250)
T PRK14245         81 ELRKNVGMVFQRPN   94 (250)
T ss_pred             HHhhheEEEecCCc
Confidence            22456999999863

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.46  E-value=1.6e-14  Score=101.66  Aligned_cols=70  Identities=17%  Similarity=0.174  Sum_probs=50.4

Q ss_pred             cCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCce----eeEEEEEEEe
Q psy16868         14 YKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRV----VNAYVEIVFD   84 (109)
Q Consensus        14 ~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~fq   84 (109)
                      |+...++++++     |++++|+||||||||||+++|+|++.|+.|.+.+.+...   . ......    .+..|+++||
T Consensus         3 ~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i---~-~~~~~~~~~~rr~~i~~v~Q   78 (363)
T TIGR01186         3 TGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENI---M-KQSPVELREVRRKKIGMVFQ   78 (363)
T ss_pred             cCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEEC---C-cCCHHHHHHHHhCcEEEEEC
Confidence            44444455554     899999999999999999999999999999988655311   1 111111    1467999999


Q ss_pred             cCC
Q psy16868         85 NTD   87 (109)
Q Consensus        85 ~~~   87 (109)
                      ++.
T Consensus        79 ~~~   81 (363)
T TIGR01186        79 QFA   81 (363)
T ss_pred             CCc
Confidence            863

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.46  E-value=5.5e-14  Score=98.62  Aligned_cols=62  Identities=16%  Similarity=0.201  Sum_probs=44.7

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT   86 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~   86 (109)
                      +++++|+||||||||||+++|+|++.|..|.+.+.+............+..++.|+++||++
T Consensus        24 Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~   85 (352)
T PRK11144         24 QGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDA   85 (352)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCc
Confidence            89999999999999999999999999999998755431100000011122346799999986

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.46  E-value=6.1e-14  Score=91.86  Aligned_cols=57  Identities=19%  Similarity=0.248  Sum_probs=43.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD   87 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~   87 (109)
                      |++++|+||||||||||+++|+|++.+..|.+.+.+...   . ...  ..+..++++||++.
T Consensus        24 Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~---~-~~~--~~~~~i~~~~q~~~   80 (211)
T cd03298          24 GEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDV---T-AAP--PADRPVSMLFQENN   80 (211)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEc---C-cCC--HhHccEEEEecccc
Confidence            899999999999999999999999999999987544211   1 111  11356999999864

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.46  E-value=7e-14  Score=96.40  Aligned_cols=81  Identities=16%  Similarity=0.331  Sum_probs=57.0

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc-----cCcccccccchhhhhhhcCCCCc
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS-----DESTSLRHSDSRQALLHEGTGPR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~   73 (109)
                      .|.++|+ ..|.+..++++++     |++++|+|+||||||||+++|+|++.     +..|.+.+.+..  +........
T Consensus        45 ~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~--i~~~~~~~~  122 (305)
T PRK14264         45 KLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQD--IYQDGVNLV  122 (305)
T ss_pred             eEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE--cccccccHH
Confidence            3778888 6787665566555     89999999999999999999999985     578888755431  110111111


Q ss_pred             eeeEEEEEEEecCC
Q psy16868         74 VVNAYVEIVFDNTD   87 (109)
Q Consensus        74 ~~~~~i~~~fq~~~   87 (109)
                      ..+..++++||++.
T Consensus       123 ~~~~~i~~v~q~~~  136 (305)
T PRK14264        123 ELRKRVGMVFQSPN  136 (305)
T ss_pred             HHhhceEEEccCCc
Confidence            22457999999863

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.45  E-value=4.4e-14  Score=105.29  Aligned_cols=81  Identities=16%  Similarity=0.228  Sum_probs=57.3

Q ss_pred             EEEece-eecCC-----------CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhc
Q psy16868          6 VIIHGF-KSYKE-----------QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHE   68 (109)
Q Consensus         6 i~i~n~-~~~~~-----------~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~   68 (109)
                      |+++|+ +.|..           ..++++++     |++++|+|+||||||||+++|+|++.|..|.+.+.+....-. .
T Consensus       314 L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~-~  392 (623)
T PRK10261        314 LQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL-S  392 (623)
T ss_pred             EEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC-C
Confidence            778888 67741           34566665     899999999999999999999999999999988655311000 0


Q ss_pred             CCCCceeeEEEEEEEecCC
Q psy16868         69 GTGPRVVNAYVEIVFDNTD   87 (109)
Q Consensus        69 ~~~~~~~~~~i~~~fq~~~   87 (109)
                      .......+..|+++||++.
T Consensus       393 ~~~~~~~~~~i~~v~Q~~~  411 (623)
T PRK10261        393 PGKLQALRRDIQFIFQDPY  411 (623)
T ss_pred             HHHHHHhcCCeEEEecCch
Confidence            0000112457999999874

>PF11398 DUF2813: Protein of unknown function (DUF2813); InterPro: IPR022602 This entry contains YbjD from Escherichia coli (strain K12), which is a conserved protein with a nucleotide triphosphate binding domain

Probab=99.45  E-value=3.5e-13  Score=94.81  Aligned_cols=52  Identities=29%  Similarity=0.537  Sum_probs=46.1

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCccc
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTS   55 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~   55 (109)
                      |++++|+|+||++++... + .++ +.++|+|+|++||||+|+||+.++.+....
T Consensus         1 M~l~~i~i~~FRgi~~~~-~-~l~-~~t~liG~N~~GKss~l~Al~~~l~~~~~~   52 (373)
T PF11398_consen    1 MKLERIEISNFRGIKRLS-L-PLD-DNTVLIGENNWGKSSLLDALSLLLSPSRRL   52 (373)
T ss_pred             CeEEEEEEeccCccceEE-E-Eec-CceEEEcCCCccHhHHHHHHHHHhCCCccc
Confidence            999999999999998866 5 665 789999999999999999999999887443

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.45  E-value=1.8e-14  Score=98.59  Aligned_cols=98  Identities=15%  Similarity=0.193  Sum_probs=64.4

Q ss_pred             EEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC-----cccccccchhhhhhhcCC
Q psy16868          6 VIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE-----STSLRHSDSRQALLHEGT   70 (109)
Q Consensus         6 i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~-----~~~~~~~~~~~~~~~~~~   70 (109)
                      ++++|+ ..|..    ..++++++     +++.+|+|++||||||+..||.+++++.     .|.+.+.+...--.....
T Consensus         2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~   81 (316)
T COG0444           2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE   81 (316)
T ss_pred             ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence            455665 34433    34566665     8999999999999999999999999832     345554443110010111


Q ss_pred             CCceeeEEEEEEEecCCCCCceeEEEeecceee
Q psy16868         71 GPRVVNAYVEIVFDNTDHRVPGFIRCRSTSVDL  103 (109)
Q Consensus        71 ~~~~~~~~i~~~fq~~~~~~~~~~~~~~~~~~~  103 (109)
                      ...-+...|+++||+|...+.+..+...+..+.
T Consensus        82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~  114 (316)
T COG0444          82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEV  114 (316)
T ss_pred             HHhhcCceEEEEEcCchhhcCChhhHHHHHHHH
Confidence            112346789999999999988777776655443

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.45  E-value=6.1e-14  Score=90.80  Aligned_cols=55  Identities=24%  Similarity=0.433  Sum_probs=48.3

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD   60 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~   60 (109)
                      ++++|+ +.|....++++++     |++++|+|||||||||||.+++.++...+|.+.+.+
T Consensus         2 I~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g   62 (252)
T COG4604           2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDG   62 (252)
T ss_pred             eeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEee
Confidence            578898 8898887777776     899999999999999999999999999999887544

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.44  E-value=1.2e-13  Score=91.98  Aligned_cols=73  Identities=19%  Similarity=0.195  Sum_probs=52.0

Q ss_pred             EEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          7 IIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         7 ~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      +++|+ ..|.+. ++++++     +++++|+|+||||||||+++|+|++.+..|.+.+.+...    ....  .....++
T Consensus         2 ~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~----~~~~--~~~~~i~   74 (235)
T cd03299           2 KVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDI----TNLP--PEKRDIS   74 (235)
T ss_pred             eeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEc----CcCC--hhHcCEE
Confidence            45555 455443 355554     889999999999999999999999999999887554211    1111  1245799


Q ss_pred             EEEecC
Q psy16868         81 IVFDNT   86 (109)
Q Consensus        81 ~~fq~~   86 (109)
                      ++||++
T Consensus        75 ~~~q~~   80 (235)
T cd03299          75 YVPQNY   80 (235)
T ss_pred             EEeecC
Confidence            999985

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.44  E-value=1.4e-13  Score=91.42  Aligned_cols=75  Identities=19%  Similarity=0.235  Sum_probs=51.8

Q ss_pred             EEEece-eecCCCeeEecCC---CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD---KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEI   81 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~---~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   81 (109)
                      ++++|+ +.|.....-.+++   |++++|+||||||||||+++|+|++.+..|.+.+.+...   . ...  .....+++
T Consensus         2 l~~~~l~~~~~~~~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~---~-~~~--~~~~~i~~   75 (232)
T PRK10771          2 LKLTDITWLYHHLPMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDH---T-TTP--PSRRPVSM   75 (232)
T ss_pred             eEEEEEEEEECCccceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeec---C-cCC--hhhccEEE
Confidence            456777 5665432101222   899999999999999999999999999999987554311   1 111  11356899


Q ss_pred             EEecC
Q psy16868         82 VFDNT   86 (109)
Q Consensus        82 ~fq~~   86 (109)
                      +||++
T Consensus        76 ~~q~~   80 (232)
T PRK10771         76 LFQEN   80 (232)
T ss_pred             Eeccc
Confidence            99875

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.44  E-value=3.4e-15  Score=96.59  Aligned_cols=79  Identities=19%  Similarity=0.270  Sum_probs=61.9

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      .+.+.|+ ++|+.++++.+++     |++++|.|||||||||.+.++.|+..+.+|.+.+++.+..   .-......+..
T Consensus         4 ~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT---~lPm~~RArlG   80 (243)
T COG1137           4 TLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDIT---KLPMHKRARLG   80 (243)
T ss_pred             EEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccc---cCChHHHhhcC
Confidence            5788999 8999998887776     8999999999999999999999999999999885553211   11111223567


Q ss_pred             EEEEEecC
Q psy16868         79 VEIVFDNT   86 (109)
Q Consensus        79 i~~~fq~~   86 (109)
                      |+|.+|.+
T Consensus        81 igYLpQE~   88 (243)
T COG1137          81 IGYLPQEA   88 (243)
T ss_pred             cccccccc
Confidence            88888876

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.44  E-value=5.6e-14  Score=102.09  Aligned_cols=79  Identities=20%  Similarity=0.262  Sum_probs=56.5

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-CcccccccchhhhhhhcCCCCceeeE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-ESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      .|+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|+.++ ..|.+.+.+..   ..........+.
T Consensus       260 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~---~~~~~~~~~~~~  336 (490)
T PRK10938        260 RIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRR---RGSGETIWDIKK  336 (490)
T ss_pred             eEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEeccc---CCCCCCHHHHHh
Confidence            3788898 7787666677766     899999999999999999999998764 57888755431   111111111245


Q ss_pred             EEEEEEecC
Q psy16868         78 YVEIVFDNT   86 (109)
Q Consensus        78 ~i~~~fq~~   86 (109)
                      .|++++|++
T Consensus       337 ~i~~v~q~~  345 (490)
T PRK10938        337 HIGYVSSSL  345 (490)
T ss_pred             hceEECHHH
Confidence            689999875

>PRK10869 recombination and repair protein; Provisional

Probab=99.44  E-value=5.5e-13  Score=98.25  Aligned_cols=70  Identities=23%  Similarity=0.366  Sum_probs=54.8

Q ss_pred             eeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEE
Q psy16868          2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEI   81 (109)
Q Consensus         2 ~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   81 (109)
                      |+.+|+++||..|.+.. + +|++++++|+||||||||+|++||+.++.....        ...+..+..    .+.|..
T Consensus         1 ML~~L~I~nf~~i~~~~-i-~f~~glnvitGetGaGKS~ildAi~~llG~r~~--------~~~ir~g~~----~a~Ve~   66 (553)
T PRK10869          1 MLAQLTISNFAIVRELE-I-DFQSGMTVITGETGAGKSIAIDALGLCLGGRAE--------ASMVRPGAT----RADLCA   66 (553)
T ss_pred             CccEEEEcccccceeeE-E-ecCCCcEEEECCCCCChHHHHHHHHHHhCCCcc--------cccccCCCC----cEEEEE
Confidence            47899999999997666 6 888999999999999999999999999853221        123444433    678888


Q ss_pred             EEec
Q psy16868         82 VFDN   85 (109)
Q Consensus        82 ~fq~   85 (109)
                      +|..
T Consensus        67 ~F~~   70 (553)
T PRK10869         67 RFSL   70 (553)
T ss_pred             EEec
Confidence            8865

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.44  E-value=4.7e-14  Score=103.36  Aligned_cols=81  Identities=23%  Similarity=0.354  Sum_probs=56.1

Q ss_pred             EEEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcC
Q psy16868          5 QVIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEG   69 (109)
Q Consensus         5 ~i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~   69 (109)
                      -++++|+ +.|.+    ..++++++     |++++|+||||||||||+++|+|++.+     ..|.+.+.+...  ....
T Consensus         5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i--~~~~   82 (529)
T PRK15134          5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESL--LHAS   82 (529)
T ss_pred             eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEec--ccCC
Confidence            3788888 77853    34566665     899999999999999999999999986     578877544211  0000


Q ss_pred             CC-C-ceeeEEEEEEEecCC
Q psy16868         70 TG-P-RVVNAYVEIVFDNTD   87 (109)
Q Consensus        70 ~~-~-~~~~~~i~~~fq~~~   87 (109)
                      .. . ......|+++||++.
T Consensus        83 ~~~~~~~~~~~ig~v~Q~~~  102 (529)
T PRK15134         83 EQTLRGVRGNKIAMIFQEPM  102 (529)
T ss_pred             HHHHHHHhcCceEEEecCch
Confidence            00 0 011246999999864

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.44  E-value=7.8e-14  Score=94.99  Aligned_cols=78  Identities=17%  Similarity=0.233  Sum_probs=56.3

Q ss_pred             EEEEece-eecC--CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYK--EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~--~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .|+++|+ ..|.  ...++++++     |++++|+|+||||||||+++|++++. ..|.+.+++....    .......+
T Consensus         2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~----~~~~~~lr   76 (275)
T cd03289           2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWN----SVPLQKWR   76 (275)
T ss_pred             eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhh----hCCHHHHh
Confidence            4778888 6773  334566665     89999999999999999999999997 6788875553111    11112235


Q ss_pred             EEEEEEEecCC
Q psy16868         77 AYVEIVFDNTD   87 (109)
Q Consensus        77 ~~i~~~fq~~~   87 (109)
                      ..|+++||++.
T Consensus        77 ~~i~~v~q~~~   87 (275)
T cd03289          77 KAFGVIPQKVF   87 (275)
T ss_pred             hhEEEECCCcc
Confidence            67999999863

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.44  E-value=8.1e-14  Score=97.84  Aligned_cols=63  Identities=16%  Similarity=0.169  Sum_probs=45.1

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD   87 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~   87 (109)
                      |++++|+||||||||||+++|+|++.|..|.+.+.+...............+..|+++||++.
T Consensus        23 Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~   85 (354)
T TIGR02142        23 QGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR   85 (354)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCc
Confidence            789999999999999999999999999999987555321100000011223457999999863

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.43  E-value=4.3e-14  Score=102.73  Aligned_cols=76  Identities=14%  Similarity=0.272  Sum_probs=52.6

Q ss_pred             ece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEE
Q psy16868          9 HGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIV   82 (109)
Q Consensus         9 ~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   82 (109)
                      +|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...   .........+..++++
T Consensus         2 ~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~---~~~~~~~~~~~~i~~v   78 (491)
T PRK10982          2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEI---DFKSSKEALENGISMV   78 (491)
T ss_pred             CceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEEC---CCCCHHHHHhCCEEEE
Confidence            345 4565555566555     889999999999999999999999999999987554311   1000001113568999


Q ss_pred             EecCC
Q psy16868         83 FDNTD   87 (109)
Q Consensus        83 fq~~~   87 (109)
                      ||++.
T Consensus        79 ~q~~~   83 (491)
T PRK10982         79 HQELN   83 (491)
T ss_pred             ecccc
Confidence            99863

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.43  E-value=2e-13  Score=100.60  Aligned_cols=66  Identities=18%  Similarity=0.303  Sum_probs=53.5

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      ++++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+               ...|
T Consensus       323 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~---------------~~~i  387 (552)
T TIGR03719       323 IEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE---------------TVKL  387 (552)
T ss_pred             EEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC---------------ceEE
Confidence            778888 6787666666665     899999999999999999999999999999876311               1258


Q ss_pred             EEEEecC
Q psy16868         80 EIVFDNT   86 (109)
Q Consensus        80 ~~~fq~~   86 (109)
                      ++++|++
T Consensus       388 ~~v~q~~  394 (552)
T TIGR03719       388 AYVDQSR  394 (552)
T ss_pred             EEEeCCc
Confidence            8999875

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.43  E-value=6.7e-14  Score=105.20  Aligned_cols=78  Identities=17%  Similarity=0.227  Sum_probs=61.9

Q ss_pred             EEEEece-eecCCC--eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKEQ--TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~~--~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .++++|. .+|...  .++.+++     |+.++|+|+||||||||++.|.|++.|..|.+.+++.    ....-+....+
T Consensus       471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~----dl~~i~~~~lR  546 (709)
T COG2274         471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGV----DLNDIDLASLR  546 (709)
T ss_pred             eEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE----eHHhcCHHHHH
Confidence            5888888 677655  3455555     8999999999999999999999999999999996553    33334445568


Q ss_pred             EEEEEEEecC
Q psy16868         77 AYVEIVFDNT   86 (109)
Q Consensus        77 ~~i~~~fq~~   86 (109)
                      +.|++|.|++
T Consensus       547 ~~ig~V~Q~~  556 (709)
T COG2274         547 RQVGYVLQDP  556 (709)
T ss_pred             hheeEEcccc
Confidence            8999999986

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.43  E-value=2.1e-13  Score=89.55  Aligned_cols=57  Identities=19%  Similarity=0.283  Sum_probs=44.5

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD   87 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~   87 (109)
                      |++++|+||||||||||+++|+|++.+..|.+.+.+..   +.. .  ...+..++++||++.
T Consensus        24 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~---~~~-~--~~~~~~i~~v~q~~~   80 (213)
T TIGR01277        24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQS---HTG-L--APYQRPVSMLFQENN   80 (213)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE---ccc-C--ChhccceEEEeccCc
Confidence            89999999999999999999999999999998755431   111 1  112466999999863

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.42  E-value=9.2e-14  Score=88.97  Aligned_cols=77  Identities=14%  Similarity=0.164  Sum_probs=54.0

Q ss_pred             EEece-eecCCCeeEecCC---CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEE
Q psy16868          7 IIHGF-KSYKEQTVVEPFD---KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIV   82 (109)
Q Consensus         7 ~i~n~-~~~~~~~~l~~~~---~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   82 (109)
                      .+.+. .+|....--.++.   +++++|+||+|||||||++.|+|...|.+|.+..++...    .  ..++.++=|.|+
T Consensus         3 ~L~~V~~~y~~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~----t--~~~P~~RPVSml   76 (231)
T COG3840           3 ALDDVRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDH----T--ASPPAERPVSML   76 (231)
T ss_pred             cccceEEeeCcceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeec----C--cCCcccCChhhh
Confidence            34555 4566654111222   899999999999999999999999999999988554311    1  122335668999


Q ss_pred             EecCCCC
Q psy16868         83 FDNTDHR   89 (109)
Q Consensus        83 fq~~~~~   89 (109)
                      ||..+--
T Consensus        77 FQEnNLF   83 (231)
T COG3840          77 FQENNLF   83 (231)
T ss_pred             hhccccc
Confidence            9986543

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.42  E-value=2.4e-13  Score=91.90  Aligned_cols=80  Identities=18%  Similarity=0.204  Sum_probs=53.9

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-----CcccccccchhhhhhhcCCCCce
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-----ESTSLRHSDSRQALLHEGTGPRV   74 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~   74 (109)
                      +.+++. ..|++..++++++     |++++|+|+||||||||+++|+|++.|     ..|.+.+.+...  .........
T Consensus         9 ~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i--~~~~~~~~~   86 (261)
T PRK14263          9 MDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDV--YGKGVDPVV   86 (261)
T ss_pred             EEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEec--cccccchHh
Confidence            445555 4566555566665     899999999999999999999999976     578877554311  100011112


Q ss_pred             eeEEEEEEEecCC
Q psy16868         75 VNAYVEIVFDNTD   87 (109)
Q Consensus        75 ~~~~i~~~fq~~~   87 (109)
                      .+..++++||++.
T Consensus        87 ~~~~i~~v~q~~~   99 (261)
T PRK14263         87 VRRYIGMVFQQPN   99 (261)
T ss_pred             hhhceEEEecCCc
Confidence            2456999999863

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.42  E-value=4e-14  Score=93.69  Aligned_cols=56  Identities=20%  Similarity=0.242  Sum_probs=46.3

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD   60 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~   60 (109)
                      .+.++|+ ..|.+..++++++     +++++|+||||||||||+++|+|++.|..|.+.+.+
T Consensus        22 ~l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g   83 (224)
T cd03220          22 KLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG   83 (224)
T ss_pred             hhhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence            3556666 6677776677665     899999999999999999999999999999887544

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=1.5e-13  Score=90.50  Aligned_cols=81  Identities=15%  Similarity=0.177  Sum_probs=59.0

Q ss_pred             EEEece-eecCCC-eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc--cCcccccccchhhhhhhcCCCCceee
Q psy16868          6 VIIHGF-KSYKEQ-TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS--DESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         6 i~i~n~-~~~~~~-~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      ++++|+ ....++ .+++.++     +++++|.||||||||||..+|+|.-.  .+.|.+.+.++.   +..-......+
T Consensus         4 L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~Ged---I~~l~~~ERAr   80 (251)
T COG0396           4 LEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGED---ILELSPDERAR   80 (251)
T ss_pred             eEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcc---cccCCHhHHHh
Confidence            788888 666664 6677666     89999999999999999999999863  677888766642   21222222335


Q ss_pred             EEEEEEEecCCCC
Q psy16868         77 AYVEIVFDNTDHR   89 (109)
Q Consensus        77 ~~i~~~fq~~~~~   89 (109)
                      +.|.+-||.|..-
T Consensus        81 ~GifLafQ~P~ei   93 (251)
T COG0396          81 AGIFLAFQYPVEI   93 (251)
T ss_pred             cCCEEeecCCccC
Confidence            6788899998543

>TIGR00634 recN DNA repair protein RecN

Probab=99.42  E-value=1.1e-12  Score=96.82  Aligned_cols=71  Identities=24%  Similarity=0.375  Sum_probs=55.4

Q ss_pred             eeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEE
Q psy16868          2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEI   81 (109)
Q Consensus         2 ~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   81 (109)
                      ||..|++.||+.|.+.. + +|++++++|+||||||||+|++||.+++.....        ..++..+..    .+.|..
T Consensus         1 Ml~~l~i~nf~~~~~~~-i-~f~~g~~vitG~nGaGKS~ll~al~~~~g~~~~--------~~~i~~~~~----~~~v~~   66 (563)
T TIGR00634         1 MLTELRINNFALIRVLT-V-EFERGLTVLTGETGAGKSMIIDALSLLGGQRAG--------ASRVRSGEN----RAVVEG   66 (563)
T ss_pred             CceEEEEcceeeeeeeE-E-ecCCCeEEEECCCCCCHHHHHHHHHHHhCcCch--------HHHhcCCCC----eEEEEE
Confidence            47899999999997766 6 788999999999999999999999999865421        224444433    677888


Q ss_pred             EEecC
Q psy16868         82 VFDNT   86 (109)
Q Consensus        82 ~fq~~   86 (109)
                      +|+.+
T Consensus        67 ~f~~~   71 (563)
T TIGR00634        67 RFTTE   71 (563)
T ss_pred             EEccC
Confidence            88653

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.42  E-value=2.7e-13  Score=99.97  Aligned_cols=66  Identities=18%  Similarity=0.310  Sum_probs=53.6

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+               ...|
T Consensus       325 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~---------------~~~i  389 (556)
T PRK11819        325 IEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE---------------TVKL  389 (556)
T ss_pred             EEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC---------------ceEE
Confidence            778888 7787666666666     899999999999999999999999999999876311               1258


Q ss_pred             EEEEecC
Q psy16868         80 EIVFDNT   86 (109)
Q Consensus        80 ~~~fq~~   86 (109)
                      ++++|++
T Consensus       390 ~~v~q~~  396 (556)
T PRK11819        390 AYVDQSR  396 (556)
T ss_pred             EEEeCch
Confidence            8999875

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.42  E-value=3.1e-13  Score=101.00  Aligned_cols=67  Identities=15%  Similarity=0.213  Sum_probs=53.5

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      -|+++|+ +.|.+..++++++     |++++|+|||||||||||++|+|++.|..|.+.+ +.              ...
T Consensus       319 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~--------------~~~  383 (635)
T PRK11147        319 VFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GT--------------KLE  383 (635)
T ss_pred             eEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CC--------------CcE
Confidence            3788888 7787766676666     8899999999999999999999999999998762 11              125


Q ss_pred             EEEEEecC
Q psy16868         79 VEIVFDNT   86 (109)
Q Consensus        79 i~~~fq~~   86 (109)
                      |++++|++
T Consensus       384 i~y~~q~~  391 (635)
T PRK11147        384 VAYFDQHR  391 (635)
T ss_pred             EEEEeCcc
Confidence            78888864

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.42  E-value=1.3e-13  Score=103.74  Aligned_cols=79  Identities=19%  Similarity=0.262  Sum_probs=60.8

Q ss_pred             EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .|+++|+ .+|.+  ..++++++     |+.++|+|+||||||||++.|+|++.|..|.+.+++..    ....+....+
T Consensus       451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~----i~~~~~~~lr  526 (686)
T TIGR03797       451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQD----LAGLDVQAVR  526 (686)
T ss_pred             eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEE----cCcCCHHHHH
Confidence            5888998 67842  34566666     89999999999999999999999999999999865531    1222233446


Q ss_pred             EEEEEEEecCC
Q psy16868         77 AYVEIVFDNTD   87 (109)
Q Consensus        77 ~~i~~~fq~~~   87 (109)
                      ..|++++|++.
T Consensus       527 ~~i~~v~Q~~~  537 (686)
T TIGR03797       527 RQLGVVLQNGR  537 (686)
T ss_pred             hccEEEccCCc
Confidence            78999999873

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.41  E-value=1.2e-13  Score=102.01  Aligned_cols=78  Identities=15%  Similarity=0.191  Sum_probs=58.9

Q ss_pred             EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .++++|+ ..|.+  ..++++++     |+.++|+|+||||||||+++|+|+++|..|.+.+++...    ........+
T Consensus       341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i----~~~~~~~~~  416 (582)
T PRK11176        341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDL----RDYTLASLR  416 (582)
T ss_pred             eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEh----hhcCHHHHH
Confidence            5888888 67754  33566665     899999999999999999999999999999998655321    111222235


Q ss_pred             EEEEEEEecC
Q psy16868         77 AYVEIVFDNT   86 (109)
Q Consensus        77 ~~i~~~fq~~   86 (109)
                      ..|++++|++
T Consensus       417 ~~i~~v~Q~~  426 (582)
T PRK11176        417 NQVALVSQNV  426 (582)
T ss_pred             hhceEEccCc
Confidence            6799999986

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.41  E-value=3.6e-13  Score=100.69  Aligned_cols=66  Identities=15%  Similarity=0.257  Sum_probs=53.7

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|+ +.|.+..++++++     |++++|+|||||||||||++|+|++.|..|.+.+..               ...|
T Consensus       313 l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~~i  377 (638)
T PRK10636        313 LKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK---------------GIKL  377 (638)
T ss_pred             EEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC---------------CEEE
Confidence            778888 7787766677666     899999999999999999999999999999876321               1358


Q ss_pred             EEEEecC
Q psy16868         80 EIVFDNT   86 (109)
Q Consensus        80 ~~~fq~~   86 (109)
                      ++++|+.
T Consensus       378 gy~~Q~~  384 (638)
T PRK10636        378 GYFAQHQ  384 (638)
T ss_pred             EEecCcc
Confidence            8888864

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.41  E-value=1.2e-13  Score=104.06  Aligned_cols=78  Identities=21%  Similarity=0.238  Sum_probs=60.2

Q ss_pred             EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .|+++|+ .+|.+  ..++++++     |+.++|+|+||||||||+++|+|++.|..|.+.+++...    ...+....+
T Consensus       477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i----~~~~~~~lr  552 (710)
T TIGR03796       477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPR----EEIPREVLA  552 (710)
T ss_pred             eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeH----HHCCHHHHH
Confidence            5788888 67864  34566666     899999999999999999999999999999998655311    122223346


Q ss_pred             EEEEEEEecC
Q psy16868         77 AYVEIVFDNT   86 (109)
Q Consensus        77 ~~i~~~fq~~   86 (109)
                      ..|++++|++
T Consensus       553 ~~i~~v~Q~~  562 (710)
T TIGR03796       553 NSVAMVDQDI  562 (710)
T ss_pred             hheeEEecCC
Confidence            7899999986

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.41  E-value=2.7e-13  Score=87.93  Aligned_cols=54  Identities=17%  Similarity=0.311  Sum_probs=43.2

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD   60 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~   60 (109)
                      |+++|+ +.|.+..++ +++     |++++|+|+||||||||+++|+|++.+..|.+.+.+
T Consensus         2 l~~~~l~~~~~~~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g   61 (195)
T PRK13541          2 LSLHQLQFNIEQKNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKN   61 (195)
T ss_pred             eEEEEeeEEECCcEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence            456777 566654433 344     889999999999999999999999999999987544

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.41  E-value=1.4e-13  Score=87.49  Aligned_cols=82  Identities=20%  Similarity=0.263  Sum_probs=57.8

Q ss_pred             EEEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCce
Q psy16868          5 QVIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRV   74 (109)
Q Consensus         5 ~i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   74 (109)
                      .|+++++ +...+    ..++++++     ++.++|+||+||||||||-.++|+-.+++|.++..++...-...+....-
T Consensus         6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~   85 (228)
T COG4181           6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL   85 (228)
T ss_pred             eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence            4666666 43332    23455554     89999999999999999999999999999999866643222222222333


Q ss_pred             eeEEEEEEEecC
Q psy16868         75 VNAYVEIVFDNT   86 (109)
Q Consensus        75 ~~~~i~~~fq~~   86 (109)
                      +.+.|++|||+.
T Consensus        86 R~~~vGfVFQSF   97 (228)
T COG4181          86 RARHVGFVFQSF   97 (228)
T ss_pred             hccceeEEEEee
Confidence            457899999985

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.40  E-value=1.4e-13  Score=102.68  Aligned_cols=55  Identities=18%  Similarity=0.306  Sum_probs=45.4

Q ss_pred             EEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868          6 VIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD   60 (109)
Q Consensus         6 i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~   60 (109)
                      |+++|+ +.|..    ..++++++     |++++|+|+||||||||+++|+|++.+..|.+.+.+
T Consensus        13 l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g   77 (623)
T PRK10261         13 LAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDK   77 (623)
T ss_pred             EEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECC
Confidence            788888 77852    34566665     899999999999999999999999999889876433

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.40  E-value=2.4e-13  Score=90.46  Aligned_cols=55  Identities=24%  Similarity=0.361  Sum_probs=50.3

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD   60 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~   60 (109)
                      +++.++ ++|++..++++++     |++.+++|+|||||||.+++|.+++.++.|.+.+.+
T Consensus         3 L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g   63 (300)
T COG4152           3 LEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNG   63 (300)
T ss_pred             eEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcC
Confidence            788999 8999998888776     899999999999999999999999999999988554

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.40  E-value=5.6e-14  Score=90.84  Aligned_cols=82  Identities=16%  Similarity=0.223  Sum_probs=57.5

Q ss_pred             eEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          4 KQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         4 ~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      ..+++.|+ .+|+...++.+++     |++.+|+||||+||||+|++|+|-..|+.|.+.+.+. .++..... ..-.+.
T Consensus         4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~-~dl~~~~e-~~IAr~   81 (249)
T COG4674           4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGD-TDLTKLPE-HRIARA   81 (249)
T ss_pred             ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCc-hhhccCCH-HHHHHh
Confidence            35677777 6676666555554     8999999999999999999999999999999886552 22222211 122245


Q ss_pred             EEEEEEecCC
Q psy16868         78 YVEIVFDNTD   87 (109)
Q Consensus        78 ~i~~~fq~~~   87 (109)
                      .|+=-||-|.
T Consensus        82 GIGRKFQ~Pt   91 (249)
T COG4674          82 GIGRKFQKPT   91 (249)
T ss_pred             ccCccccCCe
Confidence            6676777663

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.40  E-value=7.5e-14  Score=101.63  Aligned_cols=78  Identities=10%  Similarity=0.052  Sum_probs=54.5

Q ss_pred             EEEece-eec---CCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc-CcccccccchhhhhhhcCCCCcee
Q psy16868          6 VIIHGF-KSY---KEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD-ESTSLRHSDSRQALLHEGTGPRVV   75 (109)
Q Consensus         6 i~i~n~-~~~---~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~   75 (109)
                      |+++|+ ..|   ....++++++     |++++|+||||||||||+++|+|++.| ..|.+.+.+...   .........
T Consensus       258 l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~---~~~~~~~~~  334 (500)
T TIGR02633       258 LEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPV---DIRNPAQAI  334 (500)
T ss_pred             EEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEEC---CCCCHHHHH
Confidence            778888 566   2334566665     899999999999999999999999985 789887544211   110011112


Q ss_pred             eEEEEEEEecC
Q psy16868         76 NAYVEIVFDNT   86 (109)
Q Consensus        76 ~~~i~~~fq~~   86 (109)
                      +..|++++|++
T Consensus       335 ~~~i~~v~q~~  345 (500)
T TIGR02633       335 RAGIAMVPEDR  345 (500)
T ss_pred             hCCCEEcCcch
Confidence            45689999985

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.40  E-value=2.4e-13  Score=87.21  Aligned_cols=53  Identities=21%  Similarity=0.348  Sum_probs=42.0

Q ss_pred             Eece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868          8 IHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD   60 (109)
Q Consensus         8 i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~   60 (109)
                      ++|+ +.|.+..++++++     +++++|+||||||||||+++|+|++.+..|.+.+.+
T Consensus         2 ~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g   60 (180)
T cd03214           2 VENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG   60 (180)
T ss_pred             eeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence            3455 4565544555554     889999999999999999999999999999887544

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.40  E-value=2.6e-13  Score=101.45  Aligned_cols=54  Identities=17%  Similarity=0.302  Sum_probs=47.1

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCccccccc
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHS   59 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~   59 (109)
                      |+++|+ ++|+...++++++     |++++|+|||||||||||++|+|.+.|..|.+.+.
T Consensus         2 i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~   61 (638)
T PRK10636          2 IVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFP   61 (638)
T ss_pred             EEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEec
Confidence            678888 7888777677776     89999999999999999999999999999987643

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.40  E-value=4.4e-13  Score=90.75  Aligned_cols=63  Identities=14%  Similarity=0.168  Sum_probs=48.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD   87 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~   87 (109)
                      .++++|.|++|||||||+++|+|+..|..|.+..++....-...+...+..+++|+||||+..
T Consensus        24 ~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDAR   86 (352)
T COG4148          24 RGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDAR   86 (352)
T ss_pred             CceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccc
Confidence            389999999999999999999999999999998665411111122334556789999999863

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.40  E-value=2.6e-13  Score=99.78  Aligned_cols=78  Identities=18%  Similarity=0.276  Sum_probs=59.6

Q ss_pred             EEEEece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          5 QVIIHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         5 ~i~i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      .++++|+ .+|.+ ..++++++     |+.++|+||||||||||++.|+|++.|..|.+.+++...    ........+.
T Consensus       322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~----~~~~~~~~~~  397 (547)
T PRK10522        322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV----TAEQPEDYRK  397 (547)
T ss_pred             eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEC----CCCCHHHHhh
Confidence            5888888 67854 34577766     899999999999999999999999999999988655311    1122223356


Q ss_pred             EEEEEEecC
Q psy16868         78 YVEIVFDNT   86 (109)
Q Consensus        78 ~i~~~fq~~   86 (109)
                      .|++++|++
T Consensus       398 ~i~~v~q~~  406 (547)
T PRK10522        398 LFSAVFTDF  406 (547)
T ss_pred             heEEEecCh
Confidence            799999986

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.40  E-value=1.8e-13  Score=103.22  Aligned_cols=78  Identities=14%  Similarity=0.255  Sum_probs=60.1

Q ss_pred             EEEEece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          5 QVIIHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         5 ~i~i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      .|+++|+ .+|.+ ..++++++     |+.++|+|+||||||||++.|+|++.|+.|.+.+++...    ...+....+.
T Consensus       473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i----~~~~~~~lr~  548 (708)
T TIGR01193       473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSL----KDIDRHTLRQ  548 (708)
T ss_pred             cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEH----HHcCHHHHHH
Confidence            4788888 67753 34566666     899999999999999999999999999999998665321    1222333467


Q ss_pred             EEEEEEecC
Q psy16868         78 YVEIVFDNT   86 (109)
Q Consensus        78 ~i~~~fq~~   86 (109)
                      .|++++|++
T Consensus       549 ~i~~v~Q~~  557 (708)
T TIGR01193       549 FINYLPQEP  557 (708)
T ss_pred             heEEEecCc
Confidence            899999986

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.39  E-value=3.2e-13  Score=100.94  Aligned_cols=53  Identities=23%  Similarity=0.385  Sum_probs=46.9

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccc
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRH   58 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~   58 (109)
                      |+++|+ ++|.+..++++++     |++++|+|||||||||||++|+|++.|..|.+.+
T Consensus         4 l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~   62 (635)
T PRK11147          4 ISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIY   62 (635)
T ss_pred             EEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEe
Confidence            788998 7888776677766     8899999999999999999999999999998764

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.39  E-value=2.3e-13  Score=99.65  Aligned_cols=78  Identities=14%  Similarity=0.221  Sum_probs=59.5

Q ss_pred             EEEEece-eecCCC--eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKEQ--TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~~--~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .|+++|+ .+|.+.  .++++++     |+.++|+||||||||||+++|+|+.+|..|.+.+++...    ........+
T Consensus       320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i----~~~~~~~lr  395 (529)
T TIGR02857       320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPL----ADADADSWR  395 (529)
T ss_pred             eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeh----hhCCHHHHH
Confidence            5888888 678652  3566665     899999999999999999999999999999988554311    112223345


Q ss_pred             EEEEEEEecC
Q psy16868         77 AYVEIVFDNT   86 (109)
Q Consensus        77 ~~i~~~fq~~   86 (109)
                      +.|++++|++
T Consensus       396 ~~i~~v~Q~~  405 (529)
T TIGR02857       396 DQIAWVPQHP  405 (529)
T ss_pred             hheEEEcCCC
Confidence            6799999986

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.39  E-value=3.7e-13  Score=89.71  Aligned_cols=67  Identities=18%  Similarity=0.247  Sum_probs=48.0

Q ss_pred             cCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEec
Q psy16868         14 YKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDN   85 (109)
Q Consensus        14 ~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~   85 (109)
                      |....++++++     +++++|+|+||||||||+++|+|++.|..|.+.+.+..   ...  ........++++++.
T Consensus        31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~---~~~--~~~~~~~~i~~~~~~  102 (236)
T cd03267          31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLV---PWK--RRKKFLRRIGVVFGQ  102 (236)
T ss_pred             cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEE---ccc--cchhhcccEEEEcCC
Confidence            44445566655     89999999999999999999999999999998754421   111  111224568888854

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.39  E-value=3.2e-13  Score=98.83  Aligned_cols=82  Identities=21%  Similarity=0.307  Sum_probs=55.7

Q ss_pred             EEEece-eecCC-----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCccccccc-chh-hhhhhcC-CC
Q psy16868          6 VIIHGF-KSYKE-----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHS-DSR-QALLHEG-TG   71 (109)
Q Consensus         6 i~i~n~-~~~~~-----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~-~~~-~~~~~~~-~~   71 (109)
                      |+++|+ +.|..     ..++++++     |++++|+||||||||||+++|+|++.|..|.+.+. +.. .++.... ..
T Consensus       280 l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~  359 (520)
T TIGR03269       280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDG  359 (520)
T ss_pred             EEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhh
Confidence            778888 67742     34566665     89999999999999999999999999999998753 210 0010000 00


Q ss_pred             CceeeEEEEEEEecCC
Q psy16868         72 PRVVNAYVEIVFDNTD   87 (109)
Q Consensus        72 ~~~~~~~i~~~fq~~~   87 (109)
                      ....+..|+++||++.
T Consensus       360 ~~~~~~~i~~v~q~~~  375 (520)
T TIGR03269       360 RGRAKRYIGILHQEYD  375 (520)
T ss_pred             HHHHhhhEEEEccCcc
Confidence            0111346999999853

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.39  E-value=2.8e-13  Score=85.09  Aligned_cols=56  Identities=25%  Similarity=0.195  Sum_probs=40.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEe
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFD   84 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq   84 (109)
                      +++++|+|+||+|||||+++|+|++.+..|.+.+.+....    ..........++++||
T Consensus        25 g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~----~~~~~~~~~~i~~~~q   80 (157)
T cd00267          25 GEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIA----KLPLEELRRRIGYVPQ   80 (157)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcc----cCCHHHHHhceEEEee
Confidence            7899999999999999999999999999998875542110    0011112356788877

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.38  E-value=1.1e-13  Score=87.41  Aligned_cols=81  Identities=17%  Similarity=0.281  Sum_probs=60.2

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcC--CCCceee
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEG--TGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~   76 (109)
                      .|+++|+ ..|+..+++++++     |+..+++||+|+|||||++.|..+..|.+|.+...++.-++-...  +.....+
T Consensus         2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr   81 (242)
T COG4161           2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR   81 (242)
T ss_pred             ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence            4778888 6788877776665     889999999999999999999999999999877554322221111  1123446


Q ss_pred             EEEEEEEec
Q psy16868         77 AYVEIVFDN   85 (109)
Q Consensus        77 ~~i~~~fq~   85 (109)
                      ..|+||||.
T Consensus        82 ~~vgmvfqq   90 (242)
T COG4161          82 RNVGMVFQQ   90 (242)
T ss_pred             Hhhhhhhhh
Confidence            789999986

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.38  E-value=1.2e-13  Score=100.75  Aligned_cols=78  Identities=6%  Similarity=0.050  Sum_probs=54.1

Q ss_pred             EEEece-eecC---CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc-cCcccccccchhhhhhhcCCCCcee
Q psy16868          6 VIIHGF-KSYK---EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS-DESTSLRHSDSRQALLHEGTGPRVV   75 (109)
Q Consensus         6 i~i~n~-~~~~---~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~   75 (109)
                      |+++|+ +.|.   ...++++++     |++++|+|+||||||||+++|+|++. +..|.+.+.+..  + .........
T Consensus       260 l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~--~-~~~~~~~~~  336 (506)
T PRK13549        260 LEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKP--V-KIRNPQQAI  336 (506)
T ss_pred             EEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEE--C-CCCCHHHHH
Confidence            678888 6673   234455555     89999999999999999999999998 488998754421  1 100000112


Q ss_pred             eEEEEEEEecC
Q psy16868         76 NAYVEIVFDNT   86 (109)
Q Consensus        76 ~~~i~~~fq~~   86 (109)
                      +..|++++|++
T Consensus       337 ~~~i~~v~q~~  347 (506)
T PRK13549        337 AQGIAMVPEDR  347 (506)
T ss_pred             HCCCEEeCcch
Confidence            34689999985

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.38  E-value=1.2e-13  Score=100.77  Aligned_cols=76  Identities=11%  Similarity=0.102  Sum_probs=52.7

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|+ +.|.  .++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+..   +.........+..|
T Consensus       266 l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~---~~~~~~~~~~~~~i  340 (510)
T PRK09700        266 FEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKD---ISPRSPLDAVKKGM  340 (510)
T ss_pred             EEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEE---CCCCCHHHHHHCCc
Confidence            778887 4443  2355554     89999999999999999999999999999998754421   11100001123468


Q ss_pred             EEEEecC
Q psy16868         80 EIVFDNT   86 (109)
Q Consensus        80 ~~~fq~~   86 (109)
                      +++||++
T Consensus       341 ~~v~q~~  347 (510)
T PRK09700        341 AYITESR  347 (510)
T ss_pred             EEccCcc
Confidence            9999974

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.38  E-value=1.2e-13  Score=97.72  Aligned_cols=75  Identities=20%  Similarity=0.153  Sum_probs=50.2

Q ss_pred             ecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhh--hhhhcC-CCCc-eeeEEEEEEE
Q psy16868         13 SYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQ--ALLHEG-TGPR-VVNAYVEIVF   83 (109)
Q Consensus        13 ~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~--~~~~~~-~~~~-~~~~~i~~~f   83 (109)
                      .|+...++++++     |++++|+|+||||||||+++|+|++.|+.|.+.+.+...  +..... .... ..+..|+++|
T Consensus        33 ~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf  112 (382)
T TIGR03415        33 ETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF  112 (382)
T ss_pred             hhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence            344444455544     899999999999999999999999999999988554210  111000 0001 1125799999


Q ss_pred             ecCC
Q psy16868         84 DNTD   87 (109)
Q Consensus        84 q~~~   87 (109)
                      |++.
T Consensus       113 Q~~~  116 (382)
T TIGR03415       113 QKFA  116 (382)
T ss_pred             CCCc
Confidence            9863

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.38  E-value=3.4e-13  Score=99.86  Aligned_cols=78  Identities=21%  Similarity=0.298  Sum_probs=59.9

Q ss_pred             EEEEece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          5 QVIIHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         5 ~i~i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      .|+++|+ ..|.+ ..++++++     |+.++|+|+||||||||++.|+|+..|..|.+.+++...    ........+.
T Consensus       334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i----~~~~~~~~r~  409 (588)
T PRK13657        334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDI----RTVTRASLRR  409 (588)
T ss_pred             eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEh----hhCCHHHHHh
Confidence            4788888 67754 34566666     899999999999999999999999999999988655311    1222233467


Q ss_pred             EEEEEEecC
Q psy16868         78 YVEIVFDNT   86 (109)
Q Consensus        78 ~i~~~fq~~   86 (109)
                      .|++++|++
T Consensus       410 ~i~~v~Q~~  418 (588)
T PRK13657        410 NIAVVFQDA  418 (588)
T ss_pred             heEEEecCc
Confidence            799999986

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.38  E-value=3.5e-14  Score=90.97  Aligned_cols=83  Identities=22%  Similarity=0.373  Sum_probs=63.5

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCC--------
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGT--------   70 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~--------   70 (109)
                      .+++.|+ +.|++..+++.++     |+++.|+|.+||||||+|+||..+..|..|.+..+++...+.....        
T Consensus         6 ~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~   85 (256)
T COG4598           6 ALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADK   85 (256)
T ss_pred             ceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCH
Confidence            6888999 8999887777776     8999999999999999999999999999999886654332222211        


Q ss_pred             -CCceeeEEEEEEEecCC
Q psy16868         71 -GPRVVNAYVEIVFDNTD   87 (109)
Q Consensus        71 -~~~~~~~~i~~~fq~~~   87 (109)
                       .....+...+||||+.+
T Consensus        86 ~q~~r~Rs~L~mVFQ~FN  103 (256)
T COG4598          86 RQLQRLRTRLGMVFQHFN  103 (256)
T ss_pred             HHHHHHHHHhhHhhhhcc
Confidence             11233567899999864

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.38  E-value=3.4e-13  Score=99.91  Aligned_cols=78  Identities=18%  Similarity=0.253  Sum_probs=59.7

Q ss_pred             EEEEece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          5 QVIIHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         5 ~i~i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      .++++|. ..|.+ ..++++++     |+.++|+|+||||||||+++|+|++.|..|.+.+++...    ...+....+.
T Consensus       340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i----~~~~~~~l~~  415 (592)
T PRK10790        340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPL----SSLSHSVLRQ  415 (592)
T ss_pred             eEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEh----hhCCHHHHHh
Confidence            4788887 56754 34566666     899999999999999999999999999999988655311    2222334467


Q ss_pred             EEEEEEecC
Q psy16868         78 YVEIVFDNT   86 (109)
Q Consensus        78 ~i~~~fq~~   86 (109)
                      .|++++|++
T Consensus       416 ~i~~v~Q~~  424 (592)
T PRK10790        416 GVAMVQQDP  424 (592)
T ss_pred             heEEEccCC
Confidence            899999987

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.38  E-value=3.3e-13  Score=88.59  Aligned_cols=62  Identities=13%  Similarity=0.139  Sum_probs=43.5

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT   86 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~   86 (109)
                      .++++|+||||||||||+++|+|++.|..|.+.+.+...............+..+++++|++
T Consensus        23 ~e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~   84 (214)
T cd03297          23 EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQY   84 (214)
T ss_pred             ceeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCC
Confidence            48999999999999999999999999999998755431100000001111245789999886

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.38  E-value=3.4e-13  Score=99.75  Aligned_cols=78  Identities=13%  Similarity=0.253  Sum_probs=59.7

Q ss_pred             EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .|+++|+ ..|.+  ..++++++     |+.++|+||||||||||++.|++++.|..|.+.+++..    ....+....+
T Consensus       338 ~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~----i~~~~~~~~r  413 (574)
T PRK11160        338 SLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQP----IADYSEAALR  413 (574)
T ss_pred             eEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE----hhhCCHHHHH
Confidence            4788888 67754  34566666     89999999999999999999999999999998865531    1122223346


Q ss_pred             EEEEEEEecC
Q psy16868         77 AYVEIVFDNT   86 (109)
Q Consensus        77 ~~i~~~fq~~   86 (109)
                      ..|++++|++
T Consensus       414 ~~i~~v~Q~~  423 (574)
T PRK11160        414 QAISVVSQRV  423 (574)
T ss_pred             hheeEEcccc
Confidence            7799999986

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.38  E-value=1e-12  Score=89.83  Aligned_cols=52  Identities=15%  Similarity=0.275  Sum_probs=41.5

Q ss_pred             EEEEeceeecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868          5 QVIIHGFKSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus         5 ~i~i~n~~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      .|+++|+... ...++++++     |++++|+|+||||||||+++|+|++.|..|.+.
T Consensus        39 ~l~i~nls~~-~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~   95 (282)
T cd03291          39 NLFFSNLCLV-GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIK   95 (282)
T ss_pred             eEEEEEEEEe-cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            4677777322 334465555     889999999999999999999999999999876

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.37  E-value=7.9e-13  Score=92.10  Aligned_cols=81  Identities=15%  Similarity=0.283  Sum_probs=56.2

Q ss_pred             EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc-----cCcccccccchhhhhhhcCCC
Q psy16868          5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS-----DESTSLRHSDSRQALLHEGTG   71 (109)
Q Consensus         5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~-----~~~~~~~~~~~~~~~~~~~~~   71 (109)
                      .|+++|+ ..|.+  ..++++++     |++++|+|+||||||||+++|+++..     +..|.+.+.+...  ......
T Consensus        80 ~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i--~~~~~~  157 (329)
T PRK14257         80 VFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNT--RSKKIS  157 (329)
T ss_pred             eEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc--cccccc
Confidence            4778888 67743  34566665     89999999999999999999999986     3578877554311  000111


Q ss_pred             CceeeEEEEEEEecCC
Q psy16868         72 PRVVNAYVEIVFDNTD   87 (109)
Q Consensus        72 ~~~~~~~i~~~fq~~~   87 (109)
                      ....+..++++||++.
T Consensus       158 ~~~lr~~i~~v~q~~~  173 (329)
T PRK14257        158 SLELRTRIGMVFQKPT  173 (329)
T ss_pred             hHhhhccEEEEecCCc
Confidence            1123567999999864

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.37  E-value=3.8e-13  Score=89.01  Aligned_cols=62  Identities=18%  Similarity=0.272  Sum_probs=46.3

Q ss_pred             eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc---cCcccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868         18 TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS---DESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT   86 (109)
Q Consensus        18 ~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~   86 (109)
                      .++++++     +++++|+||||||||||+++|+|++.   +..|.+.+.+....       ....+..++++||++
T Consensus        21 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~-------~~~~~~~i~~~~q~~   90 (226)
T cd03234          21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK-------PDQFQKCVAYVRQDD   90 (226)
T ss_pred             ccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC-------hHHhcccEEEeCCCC
Confidence            3455554     88999999999999999999999998   88898875442111       112356789999875

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.37  E-value=2.3e-13  Score=98.99  Aligned_cols=98  Identities=14%  Similarity=0.190  Sum_probs=68.1

Q ss_pred             EEEEece-eecCCC----eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC----cccccccchhhhhhhcCC
Q psy16868          5 QVIIHGF-KSYKEQ----TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE----STSLRHSDSRQALLHEGT   70 (109)
Q Consensus         5 ~i~i~n~-~~~~~~----~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~----~~~~~~~~~~~~~~~~~~   70 (109)
                      -|+++|+ ..|...    .++++++     |++++|+|++||||||+..+|.++++..    .|.+.+.+....-.....
T Consensus         5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~   84 (539)
T COG1123           5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE   84 (539)
T ss_pred             eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence            5788887 556443    3566666     8999999999999999999999999866    577776553111111111


Q ss_pred             CCceeeEEEEEEEecCCCCCceeEEEeeccee
Q psy16868         71 GPRVVNAYVEIVFDNTDHRVPGFIRCRSTSVD  102 (109)
Q Consensus        71 ~~~~~~~~i~~~fq~~~~~~~~~~~~~~~~~~  102 (109)
                      ........|+++||+|...+.+..+...+..+
T Consensus        85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E  116 (539)
T COG1123          85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIRE  116 (539)
T ss_pred             HHHhccccEEEEecCchhhcCchhhHHHHHHH
Confidence            12234578999999999888776655554443

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=99.37  E-value=4.2e-12  Score=95.22  Aligned_cols=85  Identities=22%  Similarity=0.355  Sum_probs=56.4

Q ss_pred             CeeeEEEEeceeecCCCeeEecCC----CCceEEEecCCCCcchHHHHHHHhhccCccc--cccc----chhhhhhhcCC
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFD----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTS--LRHS----DSRQALLHEGT   70 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~----~~~~~i~G~NG~GKStll~al~~~l~~~~~~--~~~~----~~~~~~~~~~~   70 (109)
                      |+|.+|.+.||+.|.+.+.+ +|+    ..+++|+||||+|||||++||.+++++....  ..-.    ......+....
T Consensus         1 M~i~~l~l~nf~~~~~~~~~-~~~~~~~~~~~~i~G~Ng~GKttll~ai~~~LyG~~~~~~~~~~~~y~~~l~~~~n~~~   79 (650)
T TIGR03185         1 MIILQLTLENFGPYRGRQTF-DLSPSSPKPIILIGGLNGAGKTTLLDAIQLALYGKRALCSGRGNKSYEQYLRGLINRQA   79 (650)
T ss_pred             CcccEEEEeceEEEcCCcee-eeecCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccccccCCccCcHHHHHHHHhcccC
Confidence            99999999999888765434 443    2489999999999999999999999765432  1100    00111222221


Q ss_pred             CCceeeEEEEEEEecCC
Q psy16868         71 GPRVVNAYVEIVFDNTD   87 (109)
Q Consensus        71 ~~~~~~~~i~~~fq~~~   87 (109)
                       .....+.|+++|.+..
T Consensus        80 -~~~~~~~V~l~f~~~~   95 (650)
T TIGR03185        80 -GKTNPASITLTFSVVE   95 (650)
T ss_pred             -CCCCCeEEEEEEEEcc
Confidence             1234678999997654

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG0979|consensus

Probab=99.37  E-value=4.9e-12  Score=96.15  Aligned_cols=99  Identities=22%  Similarity=0.339  Sum_probs=72.9

Q ss_pred             eeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEE
Q psy16868          3 IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIV   82 (109)
Q Consensus         3 i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   82 (109)
                      |-+|++.||..|.... + .+.+.++.|+||||+||||++-|||..+.++..-+-.......++..|..    ..+|++.
T Consensus        22 IvrI~l~NF~Ty~~~e-~-~pgpsLNmIiGpNGSGKSSiVcAIcLglgG~Pk~lGRak~VgeyIK~G~~----~g~IEI~   95 (1072)
T KOG0979|consen   22 IVRIELHNFLTYDHTE-F-LPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEYIKRGED----EGYIEIE   95 (1072)
T ss_pred             eEEEEEeeeeeeeeee-e-cCCCceeeEECCCCCCchHHHHHHHHHcCCChhhccchhHHHHHHhcCCc----cceEEEE
Confidence            5689999999887655 4 55578999999999999999999999998665333224445567777776    6788888


Q ss_pred             EecCCCCCceeEEEeecceeeeeee
Q psy16868         83 FDNTDHRVPGFIRCRSTSVDLYRCS  107 (109)
Q Consensus        83 fq~~~~~~~~~~~~~~~~~~~~~~~  107 (109)
                      .-+.+....+.+.+.......|.+|
T Consensus        96 l~~~~e~~~ItR~I~~~k~S~y~iN  120 (1072)
T KOG0979|consen   96 LKDKDETLTITRLISRDKESKYFIN  120 (1072)
T ss_pred             EecCCCceEEEEEEeecCCcceeec
Confidence            7777666666665555555555544

>TIGR00606 rad50 rad50

Probab=99.36  E-value=1.7e-12  Score=103.27  Aligned_cols=84  Identities=17%  Similarity=0.366  Sum_probs=55.9

Q ss_pred             eeeEEEEeceeecCC----CeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCC--CCcee
Q psy16868          2 YIKQVIIHGFKSYKE----QTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGT--GPRVV   75 (109)
Q Consensus         2 ~i~~i~i~n~~~~~~----~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~   75 (109)
                      ++.+|.|.||++|.+    .+.+ +|+.++++|+||||||||||++||++++++....-. .+  ..++....  .....
T Consensus         2 ~~~kl~i~g~rSf~~~~~~~~~I-~F~~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~-~g--~~~i~~~~~~~~~~~   77 (1311)
T TIGR00606         2 KFLKMSILGVRSFGIEDKDKQII-DFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPGT-KG--NTFVHDPKVAQETDV   77 (1311)
T ss_pred             ccceeeeeceecCCCccccceee-ecccceEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-CC--ceEecCCCcCccHhh
Confidence            467899999999963    4446 788899999999999999999999988864321100 00  01121111  11234


Q ss_pred             eEEEEEEEecCCCC
Q psy16868         76 NAYVEIVFDNTDHR   89 (109)
Q Consensus        76 ~~~i~~~fq~~~~~   89 (109)
                      .+.|.++|++.++.
T Consensus        78 ~a~V~l~F~~~~g~   91 (1311)
T TIGR00606        78 RAQIRLQFRDVNGE   91 (1311)
T ss_pred             hheeEEEEEcCCCC
Confidence            67899999754443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.36  E-value=4.3e-13  Score=101.30  Aligned_cols=78  Identities=17%  Similarity=0.151  Sum_probs=59.5

Q ss_pred             EEEEece-eecCC---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868          5 QVIIHGF-KSYKE---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV   75 (109)
Q Consensus         5 ~i~i~n~-~~~~~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (109)
                      .|+++|+ ..|.+   ..++++++     |+.++|+||||||||||+++|.+++.|..|.+.+++...    ..-.....
T Consensus       478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i----~~~~~~~l  553 (711)
T TIGR00958       478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPL----VQYDHHYL  553 (711)
T ss_pred             eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEH----HhcCHHHH
Confidence            5888988 67753   34566666     899999999999999999999999999999988655311    11122334


Q ss_pred             eEEEEEEEecC
Q psy16868         76 NAYVEIVFDNT   86 (109)
Q Consensus        76 ~~~i~~~fq~~   86 (109)
                      +..|++++|++
T Consensus       554 r~~i~~v~Q~~  564 (711)
T TIGR00958       554 HRQVALVGQEP  564 (711)
T ss_pred             HhhceEEecCc
Confidence            56799999986

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.36  E-value=4.1e-13  Score=98.47  Aligned_cols=80  Identities=18%  Similarity=0.252  Sum_probs=54.4

Q ss_pred             EEEece-eecC-----------CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhc
Q psy16868          6 VIIHGF-KSYK-----------EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHE   68 (109)
Q Consensus         6 i~i~n~-~~~~-----------~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~   68 (109)
                      |+++|+ +.|.           +..++++++     |++++|+||||||||||+++|+|+++ ..|.+.+.+...... .
T Consensus       276 l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~-~  353 (529)
T PRK15134        276 LDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNL-N  353 (529)
T ss_pred             ccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcccc-c
Confidence            677887 6674           234566666     89999999999999999999999985 788887544211000 0


Q ss_pred             CCCCceeeEEEEEEEecCC
Q psy16868         69 GTGPRVVNAYVEIVFDNTD   87 (109)
Q Consensus        69 ~~~~~~~~~~i~~~fq~~~   87 (109)
                      .......+..|+++||++.
T Consensus       354 ~~~~~~~~~~i~~v~q~~~  372 (529)
T PRK15134        354 RRQLLPVRHRIQVVFQDPN  372 (529)
T ss_pred             hhhHHHhhhceEEEEeCch
Confidence            0000112356999999863

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.36  E-value=4.4e-13  Score=100.94  Aligned_cols=78  Identities=14%  Similarity=0.202  Sum_probs=60.0

Q ss_pred             EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .|+++|+ .+|.+  ..++++++     |+.++|+|+||||||||++.|+|++.|..|.+.+++..    ....+....+
T Consensus       463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~----l~~~~~~~lr  538 (694)
T TIGR03375       463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVD----IRQIDPADLR  538 (694)
T ss_pred             eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE----hhhCCHHHHH
Confidence            5888888 77853  33566666     89999999999999999999999999999998855531    1222233346


Q ss_pred             EEEEEEEecC
Q psy16868         77 AYVEIVFDNT   86 (109)
Q Consensus        77 ~~i~~~fq~~   86 (109)
                      ..|++++|++
T Consensus       539 ~~i~~v~Q~~  548 (694)
T TIGR03375       539 RNIGYVPQDP  548 (694)
T ss_pred             hccEEECCCh
Confidence            7899999986

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.36  E-value=1.3e-12  Score=95.58  Aligned_cols=70  Identities=19%  Similarity=0.295  Sum_probs=56.5

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      -|++.|+ ..|.++.++.+.+     |+.++|||+|||||||||++|+|.+.|..|.+....               ..+
T Consensus         3 ~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~---------------~~~   67 (530)
T COG0488           3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK---------------GLR   67 (530)
T ss_pred             eEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC---------------Cce
Confidence            3888999 8898887776665     899999999999999999999999999999876111               246


Q ss_pred             EEEEEecCCCC
Q psy16868         79 VEIVFDNTDHR   89 (109)
Q Consensus        79 i~~~fq~~~~~   89 (109)
                      |+++.|++...
T Consensus        68 v~~l~Q~~~~~   78 (530)
T COG0488          68 VGYLSQEPPLD   78 (530)
T ss_pred             EEEeCCCCCcC
Confidence            77887776543

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.36  E-value=4.4e-13  Score=99.24  Aligned_cols=77  Identities=18%  Similarity=0.217  Sum_probs=57.8

Q ss_pred             EEEEece-eec-CCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          5 QVIIHGF-KSY-KEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         5 ~i~i~n~-~~~-~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      .|+++|+ ..| .+..++++++     |+.++|+||||||||||++.|++++ |..|.+.+++..    ..+.+....+.
T Consensus       349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~----i~~~~~~~lr~  423 (588)
T PRK11174        349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIE----LRELDPESWRK  423 (588)
T ss_pred             eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEe----cccCCHHHHHh
Confidence            4788887 344 4445666665     8999999999999999999999999 889998855531    12222333467


Q ss_pred             EEEEEEecC
Q psy16868         78 YVEIVFDNT   86 (109)
Q Consensus        78 ~i~~~fq~~   86 (109)
                      .|++++|++
T Consensus       424 ~i~~v~Q~~  432 (588)
T PRK11174        424 HLSWVGQNP  432 (588)
T ss_pred             heEEecCCC
Confidence            899999987

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.35  E-value=4.1e-13  Score=98.95  Aligned_cols=78  Identities=18%  Similarity=0.226  Sum_probs=58.7

Q ss_pred             EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .++++|+ .+|.+  ..++++++     |+.++|+|+||||||||+++|+|+..|..|.+.+++...    ........+
T Consensus       330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i----~~~~~~~~~  405 (571)
T TIGR02203       330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDL----ADYTLASLR  405 (571)
T ss_pred             eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeH----HhcCHHHHH
Confidence            5888888 67754  33455554     899999999999999999999999999999998655321    122223346


Q ss_pred             EEEEEEEecC
Q psy16868         77 AYVEIVFDNT   86 (109)
Q Consensus        77 ~~i~~~fq~~   86 (109)
                      ..|++++|++
T Consensus       406 ~~i~~v~Q~~  415 (571)
T TIGR02203       406 RQVALVSQDV  415 (571)
T ss_pred             hhceEEccCc
Confidence            7799999987

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.35  E-value=7.4e-13  Score=85.80  Aligned_cols=73  Identities=23%  Similarity=0.332  Sum_probs=54.1

Q ss_pred             EEEEece-eecCCCe--eEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKEQT--VVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~--~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .+.++++ -+|..+.  ++.+++     +++++++||+||||||||+.++|+..|..|.+..++.    ...+.     .
T Consensus         3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r----~i~gP-----g   73 (259)
T COG4525           3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR----RIEGP-----G   73 (259)
T ss_pred             eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCE----eccCC-----C
Confidence            4666777 6676654  455555     8999999999999999999999999999999874432    11111     3


Q ss_pred             EEEEEEEecC
Q psy16868         77 AYVEIVFDNT   86 (109)
Q Consensus        77 ~~i~~~fq~~   86 (109)
                      +.-++|||++
T Consensus        74 aergvVFQ~~   83 (259)
T COG4525          74 AERGVVFQNE   83 (259)
T ss_pred             ccceeEeccC
Confidence            4458899986

>PLN03073 ABC transporter F family; Provisional

Probab=99.34  E-value=2.2e-12  Score=97.48  Aligned_cols=67  Identities=18%  Similarity=0.212  Sum_probs=52.7

Q ss_pred             EEEEece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          5 QVIIHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         5 ~i~i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      .|+++|+ +.|.+ ..++++++     |++++|+|||||||||||++|+|++.|..|.+.+..               ..
T Consensus       508 ~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~---------------~~  572 (718)
T PLN03073        508 IISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA---------------KV  572 (718)
T ss_pred             eEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC---------------ce
Confidence            3778888 67753 34566665     889999999999999999999999999999876211               24


Q ss_pred             EEEEEEecC
Q psy16868         78 YVEIVFDNT   86 (109)
Q Consensus        78 ~i~~~fq~~   86 (109)
                      .|++++|++
T Consensus       573 ~igyv~Q~~  581 (718)
T PLN03073        573 RMAVFSQHH  581 (718)
T ss_pred             eEEEEeccc
Confidence            688899875

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.34  E-value=6e-13  Score=88.32  Aligned_cols=57  Identities=21%  Similarity=0.185  Sum_probs=43.5

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhcc----CcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSD----ESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD   87 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~   87 (109)
                      +++++|+||||||||||+++|+|++.|    ..|.+.+.+....   ..   ......|++++|++.
T Consensus        12 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~---~~---~~~~~~i~~~~q~~~   72 (230)
T TIGR02770        12 GEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLL---PL---SIRGRHIATIMQNPR   72 (230)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEech---hh---hhhhheeEEEecCch
Confidence            889999999999999999999999998    7888875543111   10   111357999999874

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.34  E-value=6.5e-13  Score=98.45  Aligned_cols=78  Identities=14%  Similarity=0.179  Sum_probs=58.3

Q ss_pred             EEEEece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          5 QVIIHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         5 ~i~i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      .++++|+ ..|.+ ..++.+++     |+.++|+||||||||||++.|+|++.|..|.+.+++...    ...+....+.
T Consensus       334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~----~~~~~~~~~~  409 (585)
T TIGR01192       334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDI----NTVTRESLRK  409 (585)
T ss_pred             eEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEh----hhCCHHHHHh
Confidence            4788888 67864 33455555     899999999999999999999999999999988554311    1112223356


Q ss_pred             EEEEEEecC
Q psy16868         78 YVEIVFDNT   86 (109)
Q Consensus        78 ~i~~~fq~~   86 (109)
                      .+++++|++
T Consensus       410 ~i~~v~q~~  418 (585)
T TIGR01192       410 SIATVFQDA  418 (585)
T ss_pred             heEEEccCC
Confidence            799999986

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.34  E-value=5.1e-13  Score=98.57  Aligned_cols=78  Identities=17%  Similarity=0.206  Sum_probs=61.1

Q ss_pred             EEEEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          5 QVIIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         5 ~i~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      .|+++|. ..|. +..++++++     |+.++|+||+|||||||++.|.+++.+..|.+..++.    ..........+.
T Consensus       328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~----dI~~i~~~~lr~  403 (567)
T COG1132         328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGI----DIRDISLDSLRK  403 (567)
T ss_pred             eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCE----ehhhcCHHHHHH
Confidence            4888998 7787 455666666     8999999999999999999999999999999985332    222233344578


Q ss_pred             EEEEEEecC
Q psy16868         78 YVEIVFDNT   86 (109)
Q Consensus        78 ~i~~~fq~~   86 (109)
                      .|++++|++
T Consensus       404 ~I~~V~Qd~  412 (567)
T COG1132         404 RIGIVSQDP  412 (567)
T ss_pred             hccEEcccc
Confidence            899999986

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.34  E-value=7.2e-13  Score=97.43  Aligned_cols=78  Identities=13%  Similarity=0.131  Sum_probs=58.0

Q ss_pred             EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .++++|+ ..|.+  ..++++++     |+.++|+||||||||||+++|+|.+.|..|.+.+++...    ........+
T Consensus       316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i----~~~~~~~~~  391 (544)
T TIGR01842       316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADL----KQWDRETFG  391 (544)
T ss_pred             eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeh----hhCCHHHHh
Confidence            4788888 67753  34566665     899999999999999999999999999999987554311    111222335


Q ss_pred             EEEEEEEecC
Q psy16868         77 AYVEIVFDNT   86 (109)
Q Consensus        77 ~~i~~~fq~~   86 (109)
                      ..+++++|++
T Consensus       392 ~~i~~v~q~~  401 (544)
T TIGR01842       392 KHIGYLPQDV  401 (544)
T ss_pred             hheEEecCCc
Confidence            6799999985

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>KOG0057|consensus

Probab=99.34  E-value=1.1e-12  Score=95.07  Aligned_cols=77  Identities=18%  Similarity=0.236  Sum_probs=61.4

Q ss_pred             EEEEece-eecCCCe-eEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          5 QVIIHGF-KSYKEQT-VVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~-~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      .|++.|. ..|.+.+ +++.++     |+.++|+|+|||||||++++|...+. .+|.+..++.+.    +.......+.
T Consensus       351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~di----k~~~~~SlR~  425 (591)
T KOG0057|consen  351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDI----KEVSLESLRQ  425 (591)
T ss_pred             cEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeH----hhhChHHhhh
Confidence            5788888 7787766 777776     89999999999999999999999998 889988666422    2233444578


Q ss_pred             EEEEEEecC
Q psy16868         78 YVEIVFDNT   86 (109)
Q Consensus        78 ~i~~~fq~~   86 (109)
                      .|++|+|+.
T Consensus       426 ~Ig~VPQd~  434 (591)
T KOG0057|consen  426 SIGVVPQDS  434 (591)
T ss_pred             heeEeCCcc
Confidence            899999985

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.34  E-value=5.9e-13  Score=98.26  Aligned_cols=78  Identities=17%  Similarity=0.266  Sum_probs=57.8

Q ss_pred             EEEEece-eecCC---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868          5 QVIIHGF-KSYKE---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV   75 (109)
Q Consensus         5 ~i~i~n~-~~~~~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (109)
                      .|+++|+ .+|.+   ..++++++     |+.++|+|+||||||||+++|+|++.|..|.+.+++...    ........
T Consensus       337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i----~~~~~~~~  412 (576)
T TIGR02204       337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDL----RQLDPAEL  412 (576)
T ss_pred             eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEH----HhcCHHHH
Confidence            5888888 67753   23455555     899999999999999999999999999999988555311    11122223


Q ss_pred             eEEEEEEEecC
Q psy16868         76 NAYVEIVFDNT   86 (109)
Q Consensus        76 ~~~i~~~fq~~   86 (109)
                      +..+++++|++
T Consensus       413 ~~~i~~~~Q~~  423 (576)
T TIGR02204       413 RARMALVPQDP  423 (576)
T ss_pred             HHhceEEccCC
Confidence            56799999986

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.34  E-value=9.2e-13  Score=84.54  Aligned_cols=48  Identities=19%  Similarity=0.178  Sum_probs=38.3

Q ss_pred             eecCCCeeEecC----CCCceEEEecCCCCcchHHHHHHHhhccCccccccc
Q psy16868         12 KSYKEQTVVEPF----DKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHS   59 (109)
Q Consensus        12 ~~~~~~~~l~~~----~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~   59 (109)
                      +.|++..++.+.    .+++++|+||||||||||+++|+|++.|..|.+.+.
T Consensus         8 ~~~~~~~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~   59 (177)
T cd03222           8 KRYGVFFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWD   59 (177)
T ss_pred             EEECCEEEEccCcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEEC
Confidence            455555444332    288999999999999999999999999999998743

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=6.9e-13  Score=96.50  Aligned_cols=77  Identities=16%  Similarity=0.269  Sum_probs=57.1

Q ss_pred             EEEece-eecCCC-eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          6 VIIHGF-KSYKEQ-TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         6 i~i~n~-~~~~~~-~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      ++.+|+ ..|.+. .++.+++     ++.++|+|+||||||||+++|.|++.|..|.+.+++...    .+.....-++.
T Consensus       321 i~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l----~~l~~~~~~k~  396 (559)
T COG4988         321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDL----RDLSPEAWRKQ  396 (559)
T ss_pred             eeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccc----cccCHHHHHhH
Confidence            344588 677664 4455665     899999999999999999999999999999998665322    12222223567


Q ss_pred             EEEEEecC
Q psy16868         79 VEIVFDNT   86 (109)
Q Consensus        79 i~~~fq~~   86 (109)
                      +.++.|+|
T Consensus       397 i~~v~Q~p  404 (559)
T COG4988         397 ISWVSQNP  404 (559)
T ss_pred             eeeeCCCC
Confidence            88888887

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=7.7e-13  Score=84.85  Aligned_cols=36  Identities=17%  Similarity=0.287  Sum_probs=33.7

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD   60 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~   60 (109)
                      ++.+.|.||||+||||||++|+|++.|..|++.+.+
T Consensus        28 Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~   63 (209)
T COG4133          28 GEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQG   63 (209)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecC
Confidence            899999999999999999999999999999988553

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.32  E-value=5.4e-14  Score=89.11  Aligned_cols=67  Identities=15%  Similarity=0.255  Sum_probs=47.6

Q ss_pred             CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868         16 EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT   86 (109)
Q Consensus        16 ~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~   86 (109)
                      +..++++++     |+..+|+||+|||||||+++++.+..|++|.+.+.++.   + ....+...++.|+++-|.|
T Consensus        15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~---v-s~~~pea~Rq~VsY~~Q~p   86 (223)
T COG4619          15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGED---V-STLKPEAYRQQVSYCAQTP   86 (223)
T ss_pred             CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCcc---c-cccChHHHHHHHHHHHcCc
Confidence            344555555     89999999999999999999999999999998866541   1 1222233345566555544

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.32  E-value=8.1e-13  Score=97.43  Aligned_cols=78  Identities=14%  Similarity=0.169  Sum_probs=58.1

Q ss_pred             EEEEece-eecCCC-----eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCc
Q psy16868          5 QVIIHGF-KSYKEQ-----TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~~-----~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~   73 (109)
                      .|+++|+ .+|.+.     .++++++     |+.++|+||||||||||++.|++++.|..|.+.+++...    ......
T Consensus       337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i----~~~~~~  412 (555)
T TIGR01194       337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAV----SADSRD  412 (555)
T ss_pred             eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC----CCCCHH
Confidence            5888888 778642     2566665     899999999999999999999999999999988554311    111222


Q ss_pred             eeeEEEEEEEecC
Q psy16868         74 VVNAYVEIVFDNT   86 (109)
Q Consensus        74 ~~~~~i~~~fq~~   86 (109)
                      ..+..+++++|++
T Consensus       413 ~~~~~i~~v~q~~  425 (555)
T TIGR01194       413 DYRDLFSAIFADF  425 (555)
T ss_pred             HHHhhCcEEccCh
Confidence            2356789999875

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.32  E-value=9.6e-13  Score=97.26  Aligned_cols=78  Identities=17%  Similarity=0.175  Sum_probs=56.7

Q ss_pred             EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .|+++|. .+|..  ..++++++     |+.++|+||||||||||+++|+|++.|..|.+.+++...    ...+....+
T Consensus       313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~----~~~~~~~~~  388 (569)
T PRK10789        313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPL----TKLQLDSWR  388 (569)
T ss_pred             cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEH----hhCCHHHHH
Confidence            3677776 56643  33465655     899999999999999999999999999999988554311    111222335


Q ss_pred             EEEEEEEecC
Q psy16868         77 AYVEIVFDNT   86 (109)
Q Consensus        77 ~~i~~~fq~~   86 (109)
                      ..|++++|++
T Consensus       389 ~~i~~v~q~~  398 (569)
T PRK10789        389 SRLAVVSQTP  398 (569)
T ss_pred             hheEEEccCC
Confidence            6789999885

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.32  E-value=1.4e-12  Score=95.38  Aligned_cols=54  Identities=17%  Similarity=0.293  Sum_probs=43.8

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhh--ccCccccccc
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVL--SDESTSLRHS   59 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l--~~~~~~~~~~   59 (109)
                      |+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++  .|..|.+.+.
T Consensus         1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~   62 (520)
T TIGR03269         1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYH   62 (520)
T ss_pred             CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEe
Confidence            356777 6776655666665     8999999999999999999999997  5888887643

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.30  E-value=2.6e-13  Score=83.15  Aligned_cols=58  Identities=22%  Similarity=0.245  Sum_probs=43.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT   86 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~   86 (109)
                      +++++|+|+||||||||+++|+|...+..|.+.+.+....    .......+..+++++|++
T Consensus        11 g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~----~~~~~~~~~~i~~~~~~~   68 (137)
T PF00005_consen   11 GEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDIS----DIDIEELRRRIGYVPQDP   68 (137)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGT----TSHHHHHHHTEEEEESSH
T ss_pred             CCEEEEEccCCCccccceeeeccccccccccccccccccc----cccccccccccccccccc
Confidence            7899999999999999999999999999999875442111    111222356788888873

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.30  E-value=1.1e-12  Score=98.24  Aligned_cols=80  Identities=18%  Similarity=0.259  Sum_probs=56.7

Q ss_pred             EEEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCC--
Q psy16868          5 QVIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGP--   72 (109)
Q Consensus         5 ~i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~--   72 (109)
                      -|+++|+ +.|.+    ..++++++     +++++|+|+||||||||+++|+|++++..|.+.+++....  ......  
T Consensus         4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~--~~~~~~~~   81 (648)
T PRK10535          4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVA--TLDADALA   81 (648)
T ss_pred             EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcC--cCCHHHHH
Confidence            4788898 67743    23566655     8999999999999999999999999999999875543111  000000  


Q ss_pred             ceeeEEEEEEEecC
Q psy16868         73 RVVNAYVEIVFDNT   86 (109)
Q Consensus        73 ~~~~~~i~~~fq~~   86 (109)
                      ...+..++++||++
T Consensus        82 ~~~~~~i~~v~q~~   95 (648)
T PRK10535         82 QLRREHFGFIFQRY   95 (648)
T ss_pred             HHHhccEEEEeCCc
Confidence            01145799999987

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.30  E-value=1.3e-12  Score=98.45  Aligned_cols=78  Identities=15%  Similarity=0.226  Sum_probs=58.6

Q ss_pred             EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .|+++|+ ..|.+  ..++++++     |+.++|+|+||||||||+++|+|+..|..|.+.+++...    ...+....+
T Consensus       455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i----~~~~~~~~r  530 (694)
T TIGR01846       455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDL----AIADPAWLR  530 (694)
T ss_pred             eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeh----hhCCHHHHH
Confidence            5788888 67753  33566665     899999999999999999999999999999998655311    112222335


Q ss_pred             EEEEEEEecC
Q psy16868         77 AYVEIVFDNT   86 (109)
Q Consensus        77 ~~i~~~fq~~   86 (109)
                      ..|++++|++
T Consensus       531 ~~i~~v~q~~  540 (694)
T TIGR01846       531 RQMGVVLQEN  540 (694)
T ss_pred             HhCeEEccCC
Confidence            6799999985

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.30  E-value=2.4e-12  Score=105.17  Aligned_cols=78  Identities=14%  Similarity=0.084  Sum_probs=59.4

Q ss_pred             EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .|+++|+ +.|++  ..++++++     |++++|+||||||||||+++|+|++.|+.|.+.+.+...   ..  .....+
T Consensus      1937 ~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i---~~--~~~~~r 2011 (2272)
T TIGR01257      1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSI---LT--NISDVH 2011 (2272)
T ss_pred             eEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEEC---cc--hHHHHh
Confidence            4788999 78875  45677766     899999999999999999999999999999988655311   11  111224


Q ss_pred             EEEEEEEecCC
Q psy16868         77 AYVEIVFDNTD   87 (109)
Q Consensus        77 ~~i~~~fq~~~   87 (109)
                      ..|++++|++.
T Consensus      2012 ~~IGy~pQ~~~ 2022 (2272)
T TIGR01257      2012 QNMGYCPQFDA 2022 (2272)
T ss_pred             hhEEEEecccc
Confidence            57999999853

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.29  E-value=1.7e-12  Score=103.93  Aligned_cols=79  Identities=15%  Similarity=0.280  Sum_probs=58.7

Q ss_pred             EEEEece-eecCCC---eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868          5 QVIIHGF-KSYKEQ---TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV   75 (109)
Q Consensus         5 ~i~i~n~-~~~~~~---~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (109)
                      .|+++|+ ..|...   .++++++     |+.++|+||||||||||+++|++++.|..|.+.+.+. .++  ........
T Consensus       382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g-~~i--~~~~~~~l  458 (1466)
T PTZ00265        382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDS-HNL--KDINLKWW  458 (1466)
T ss_pred             cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCC-cch--hhCCHHHH
Confidence            5888998 778642   4566666     8999999999999999999999999999999885321 111  11122223


Q ss_pred             eEEEEEEEecC
Q psy16868         76 NAYVEIVFDNT   86 (109)
Q Consensus        76 ~~~i~~~fq~~   86 (109)
                      +..|++++|++
T Consensus       459 r~~Ig~V~Q~~  469 (1466)
T PTZ00265        459 RSKIGVVSQDP  469 (1466)
T ss_pred             HHhccEecccc
Confidence            56799999986

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.29  E-value=2.3e-12  Score=105.28  Aligned_cols=77  Identities=14%  Similarity=0.255  Sum_probs=58.8

Q ss_pred             EEEEece-eecC--CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYK--EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~--~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .|+++|+ +.|.  +..++++++     |++++|+|+||||||||+++|+|++.|+.|.+.+.+...   ..  .....+
T Consensus       928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI---~~--~~~~~r 1002 (2272)
T TIGR01257       928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI---ET--NLDAVR 1002 (2272)
T ss_pred             eEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEEC---cc--hHHHHh
Confidence            5788999 7784  355677766     899999999999999999999999999999987554311   11  111234


Q ss_pred             EEEEEEEecC
Q psy16868         77 AYVEIVFDNT   86 (109)
Q Consensus        77 ~~i~~~fq~~   86 (109)
                      +.+++++|++
T Consensus      1003 ~~IG~~pQ~~ 1012 (2272)
T TIGR01257      1003 QSLGMCPQHN 1012 (2272)
T ss_pred             hcEEEEecCC
Confidence            6799999986

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.27  E-value=9.1e-13  Score=95.86  Aligned_cols=76  Identities=7%  Similarity=0.109  Sum_probs=50.8

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|+ ..+  ..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...   .........+..+
T Consensus       251 i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i---~~~~~~~~~~~~i  325 (491)
T PRK10982        251 LEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKI---NNHNANEAINHGF  325 (491)
T ss_pred             EEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEEC---CCCCHHHHHHCCC
Confidence            677777 332  22344444     899999999999999999999999999999987544211   0000001113447


Q ss_pred             EEEEecC
Q psy16868         80 EIVFDNT   86 (109)
Q Consensus        80 ~~~fq~~   86 (109)
                      ++++|++
T Consensus       326 ~~~~q~~  332 (491)
T PRK10982        326 ALVTEER  332 (491)
T ss_pred             EEcCCch
Confidence            7888764

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.27  E-value=6.8e-12  Score=94.23  Aligned_cols=67  Identities=16%  Similarity=0.226  Sum_probs=52.5

Q ss_pred             EEEEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          5 QVIIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         5 ~i~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      .|+++|+ ..|. +..++++++     |+.++|+||||||||||+++|+|+.++..|.+...               .+.
T Consensus       451 ~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~---------------~~~  515 (659)
T TIGR00954       451 GIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKP---------------AKG  515 (659)
T ss_pred             eEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeec---------------CCC
Confidence            4788888 6674 345677666     89999999999999999999999998888876511               035


Q ss_pred             EEEEEEecC
Q psy16868         78 YVEIVFDNT   86 (109)
Q Consensus        78 ~i~~~fq~~   86 (109)
                      .+++++|++
T Consensus       516 ~i~~v~Q~~  524 (659)
T TIGR00954       516 KLFYVPQRP  524 (659)
T ss_pred             cEEEECCCC
Confidence            688888886

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.27  E-value=2.2e-12  Score=85.29  Aligned_cols=54  Identities=15%  Similarity=0.161  Sum_probs=43.3

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD   87 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~   87 (109)
                      |++++|+|+||||||||+++|+|++.+..|.+.+++...         ......++++||++.
T Consensus         6 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~---------~~~~~~i~~v~q~~~   59 (223)
T TIGR03771         6 GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASP---------GKGWRHIGYVPQRHE   59 (223)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc---------hHhhCcEEEeccccc
Confidence            789999999999999999999999999999987554311         012356899999864

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PLN03130 ABC transporter C family member; Provisional

Probab=99.26  E-value=3.1e-12  Score=103.29  Aligned_cols=78  Identities=17%  Similarity=0.222  Sum_probs=61.7

Q ss_pred             EEEEece-eecCCC--eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKEQ--TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~~--~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .|+++|+ .+|.+.  .++++++     |+.++|+|++|||||||+++|.+++.|..|.+.+++.    .....+....+
T Consensus      1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~----dI~~i~l~~LR 1312 (1622)
T PLN03130       1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGC----DISKFGLMDLR 1312 (1622)
T ss_pred             cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCE----ecccCCHHHHH
Confidence            4888998 778643  4677776     8999999999999999999999999999999986553    22223334456


Q ss_pred             EEEEEEEecC
Q psy16868         77 AYVEIVFDNT   86 (109)
Q Consensus        77 ~~i~~~fq~~   86 (109)
                      ..|++++|+|
T Consensus      1313 ~~IsiVpQdp 1322 (1622)
T PLN03130       1313 KVLGIIPQAP 1322 (1622)
T ss_pred             hccEEECCCC
Confidence            7899999997

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.25  E-value=3.2e-12  Score=84.84  Aligned_cols=44  Identities=18%  Similarity=0.290  Sum_probs=37.7

Q ss_pred             eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccch
Q psy16868         18 TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDS   61 (109)
Q Consensus        18 ~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~   61 (109)
                      .+|++++     |+.++|+|+||||||||++.|+|++.|+.|.+...+.
T Consensus        41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~   89 (249)
T COG1134          41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK   89 (249)
T ss_pred             EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce
Confidence            3455555     8999999999999999999999999999999875543

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.25  E-value=2.7e-12  Score=90.67  Aligned_cols=87  Identities=17%  Similarity=0.219  Sum_probs=66.5

Q ss_pred             eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCCCCCce
Q psy16868         18 TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTDHRVPG   92 (109)
Q Consensus        18 ~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~~~~~~   92 (109)
                      .++++++     ++..+|+|++|||||||=.||..++.+. |.+.|.++..+-. ......+.++.+.+|||+|.+.+.+
T Consensus       301 ~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~-~~~~mrplR~~mQvVFQDPygSLsP  378 (534)
T COG4172         301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL-SRKEMRPLRRRMQVVFQDPYGSLSP  378 (534)
T ss_pred             EEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc-ChhhhhhhhhhceEEEeCCCCCCCc
Confidence            3455554     8899999999999999999999999887 9988777543322 2233455678899999999999988


Q ss_pred             eEEEeecceeeeee
Q psy16868         93 FIRCRSTSVDLYRC  106 (109)
Q Consensus        93 ~~~~~~~~~~~~~~  106 (109)
                      +....+...++.++
T Consensus       379 RmtV~qII~EGL~v  392 (534)
T COG4172         379 RMTVGQIIEEGLRV  392 (534)
T ss_pred             ccCHHHHhhhhhhh
Confidence            88777666655443

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.25  E-value=1.4e-12  Score=95.11  Aligned_cols=60  Identities=8%  Similarity=0.046  Sum_probs=43.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD   87 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~   87 (109)
                      |++++|+||||||||||+++|+|++.|..|.+.+.+...   .........+..|++++|++.
T Consensus       279 Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~---~~~~~~~~~~~~i~~~~q~~~  338 (501)
T PRK11288        279 GEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPI---DIRSPRDAIRAGIMLCPEDRK  338 (501)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEEC---CCCCHHHHHhCCCEEcCcCHh
Confidence            899999999999999999999999999999987544211   111111112356889998753

>PRK13409 putative ATPase RIL; Provisional

Probab=99.25  E-value=1.2e-11  Score=91.85  Aligned_cols=64  Identities=19%  Similarity=0.151  Sum_probs=49.9

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      ++++|+ +.|.+.. +++++     |++++|+||||||||||+++|+|++.|..|.+.+.                 ..|
T Consensus       341 l~~~~ls~~~~~~~-l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-----------------~~i  402 (590)
T PRK13409        341 VEYPDLTKKLGDFS-LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-----------------LKI  402 (590)
T ss_pred             EEEcceEEEECCEE-EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-----------------eeE
Confidence            677888 6676543 54433     89999999999999999999999999999987521                 147


Q ss_pred             EEEEecCC
Q psy16868         80 EIVFDNTD   87 (109)
Q Consensus        80 ~~~fq~~~   87 (109)
                      ++++|+..
T Consensus       403 ~y~~Q~~~  410 (590)
T PRK13409        403 SYKPQYIK  410 (590)
T ss_pred             EEeccccc
Confidence            88888754

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.25  E-value=6.8e-12  Score=84.25  Aligned_cols=33  Identities=24%  Similarity=0.376  Sum_probs=31.4

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      |++++|+||||||||||+++|+|++.|..|.+.
T Consensus        25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~   57 (246)
T cd03237          25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIE   57 (246)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEE
Confidence            789999999999999999999999999999876

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.25  E-value=3.4e-12  Score=102.50  Aligned_cols=78  Identities=19%  Similarity=0.269  Sum_probs=61.0

Q ss_pred             EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .|+++|+ .+|.+  ..++++++     |+.++|+|++|||||||+++|.+++.|..|.+.+++..    .........+
T Consensus      1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~d----i~~i~~~~lR 1309 (1495)
T PLN03232       1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCD----VAKFGLTDLR 1309 (1495)
T ss_pred             cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEE----hhhCCHHHHH
Confidence            4888998 77854  24677776     89999999999999999999999999999999865532    1222233346


Q ss_pred             EEEEEEEecC
Q psy16868         77 AYVEIVFDNT   86 (109)
Q Consensus        77 ~~i~~~fq~~   86 (109)
                      ..|++++|+|
T Consensus      1310 ~~i~iVpQdp 1319 (1495)
T PLN03232       1310 RVLSIIPQSP 1319 (1495)
T ss_pred             hhcEEECCCC
Confidence            7899999987

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.24  E-value=3.1e-12  Score=93.29  Aligned_cols=59  Identities=10%  Similarity=0.072  Sum_probs=43.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT   86 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~   86 (109)
                      |++++|+||||||||||+++|+|++.|..|.+.+.+..   +.........+..|++++|++
T Consensus       278 Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~---i~~~~~~~~~~~~i~~v~q~~  336 (501)
T PRK10762        278 GEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHE---VVTRSPQDGLANGIVYISEDR  336 (501)
T ss_pred             CcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEE---CCCCCHHHHHHCCCEEecCcc
Confidence            89999999999999999999999999999998755421   111000011234699999986

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.24  E-value=7.7e-12  Score=84.78  Aligned_cols=36  Identities=31%  Similarity=0.220  Sum_probs=32.7

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD   60 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~   60 (109)
                      |++++|+||||||||||+++|+|++.+..|.+.+.+
T Consensus        50 Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g   85 (264)
T PRK13546         50 GDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG   85 (264)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC
Confidence            899999999999999999999999999999876433

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.24  E-value=3.8e-12  Score=85.42  Aligned_cols=58  Identities=19%  Similarity=0.202  Sum_probs=41.1

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD   87 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~   87 (109)
                      |++++|+|+||||||||+++|+|++. ..|.+.+.+..   +. ..........++++||++.
T Consensus        22 Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~---i~-~~~~~~~~~~i~~v~q~~~   79 (248)
T PRK03695         22 GEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQP---LE-AWSAAELARHRAYLSQQQT   79 (248)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEe---cC-cCCHHHHhhheEEecccCc
Confidence            89999999999999999999999985 47887754431   11 1111112345889998753

>PLN03211 ABC transporter G-25; Provisional

Probab=99.23  E-value=4.1e-12  Score=95.35  Aligned_cols=68  Identities=16%  Similarity=0.259  Sum_probs=50.0

Q ss_pred             eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC--cccccccchhhhhhhcCCCCceeeEEEEEEEe
Q psy16868         12 KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE--STSLRHSDSRQALLHEGTGPRVVNAYVEIVFD   84 (109)
Q Consensus        12 ~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq   84 (109)
                      +.|.++.++++++     |++++|+||||||||||+++|+|.+.+.  .|.+.+++...    .    ....+.+++++|
T Consensus        76 ~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~----~----~~~~~~i~yv~Q  147 (659)
T PLN03211         76 RQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKP----T----KQILKRTGFVTQ  147 (659)
T ss_pred             ccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEEC----c----hhhccceEEECc
Confidence            3565666777776     7899999999999999999999998774  78877554311    0    011346899998


Q ss_pred             cCC
Q psy16868         85 NTD   87 (109)
Q Consensus        85 ~~~   87 (109)
                      ++.
T Consensus       148 ~~~  150 (659)
T PLN03211        148 DDI  150 (659)
T ss_pred             ccc
Confidence            753

>PTZ00243 ABC transporter; Provisional

Probab=99.23  E-value=5.9e-12  Score=101.44  Aligned_cols=78  Identities=19%  Similarity=0.347  Sum_probs=61.3

Q ss_pred             EEEEece-eecCCC--eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKEQ--TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~~--~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .|+++|+ .+|.+.  .++++++     |+.++|+|++|||||||+++|.+++.+..|.+.+++..    .........+
T Consensus      1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~d----i~~i~l~~LR 1383 (1560)
T PTZ00243       1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGRE----IGAYGLRELR 1383 (1560)
T ss_pred             eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE----cccCCHHHHH
Confidence            4888998 778653  3677776     89999999999999999999999999999999865532    1222333456


Q ss_pred             EEEEEEEecC
Q psy16868         77 AYVEIVFDNT   86 (109)
Q Consensus        77 ~~i~~~fq~~   86 (109)
                      ..|++++|++
T Consensus      1384 ~~I~iVpQdp 1393 (1560)
T PTZ00243       1384 RQFSMIPQDP 1393 (1560)
T ss_pred             hcceEECCCC
Confidence            7899999997

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.23  E-value=3.5e-12  Score=84.73  Aligned_cols=36  Identities=19%  Similarity=0.239  Sum_probs=33.3

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD   60 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~   60 (109)
                      |++++|+||||||||||+++|+|++.|..|.+.+.+
T Consensus        11 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g   46 (230)
T TIGR01184        11 GEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEG   46 (230)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence            889999999999999999999999999999987544

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.23  E-value=5.7e-12  Score=82.94  Aligned_cols=33  Identities=15%  Similarity=0.165  Sum_probs=31.3

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      +++++|+||||||||||+++|+|++.|.+|.+.
T Consensus        13 Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~   45 (213)
T PRK15177         13 HEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFI   45 (213)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCccCCCCCEE
Confidence            889999999999999999999999999999874

>PRK04863 mukB cell division protein MukB; Provisional

Probab=99.23  E-value=2.9e-11  Score=96.66  Aligned_cols=56  Identities=21%  Similarity=0.314  Sum_probs=48.7

Q ss_pred             eeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCccccccc
Q psy16868          2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHS   59 (109)
Q Consensus         2 ~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~   59 (109)
                      +|++|.+.||.+|.+.. + +|++++++|+|+||+||||+|+||++++.+..+.+.++
T Consensus         6 ki~~l~l~N~~~~~~~~-~-~f~~~~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~   61 (1486)
T PRK04863          6 KFRSLTLVNWNGFFART-F-DLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFR   61 (1486)
T ss_pred             eeeEEEEecccCccceE-E-EecCCeEEEECCCCCCHHHHHHHHHccccCCCCeEEEC
Confidence            47899999999998775 6 88888999999999999999999999998887766543

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.22  E-value=1.1e-11  Score=90.62  Aligned_cols=55  Identities=18%  Similarity=0.143  Sum_probs=42.1

Q ss_pred             EEEece-eecCCC---eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868          6 VIIHGF-KSYKEQ---TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD   60 (109)
Q Consensus         6 i~i~n~-~~~~~~---~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~   60 (109)
                      +++.|+ ..|...   .++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+
T Consensus        22 L~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G   85 (549)
T PRK13545         22 DKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG   85 (549)
T ss_pred             eEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence            445555 344442   3455555     899999999999999999999999999999887443

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.22  E-value=6.6e-12  Score=84.74  Aligned_cols=46  Identities=20%  Similarity=0.178  Sum_probs=36.9

Q ss_pred             eecCCC-eeEecCC----CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868         12 KSYKEQ-TVVEPFD----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus        12 ~~~~~~-~~l~~~~----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      ++|.+. .++++++    |++++|+||||||||||+++|+|++.|..|.+.
T Consensus         8 ~~y~~~~~~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~   58 (255)
T cd03236           8 HRYGPNSFKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFD   58 (255)
T ss_pred             eeecCcchhhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEe
Confidence            455443 2344443    789999999999999999999999999999874

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>KOG0056|consensus

Probab=99.21  E-value=8.7e-12  Score=90.14  Aligned_cols=78  Identities=15%  Similarity=0.231  Sum_probs=61.9

Q ss_pred             EEEEece-eecCCC-eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          5 QVIIHGF-KSYKEQ-TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         5 ~i~i~n~-~~~~~~-~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      +|+++|. ..|.+. .++.+++     |+.++|+||+|+||||+|+.|-...+.++|.+.+++++...+..    ...+.
T Consensus       537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~----~SLRs  612 (790)
T KOG0056|consen  537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQ----SSLRS  612 (790)
T ss_pred             eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHH----HHHHH
Confidence            5788888 778764 4566766     88999999999999999999999999999999877764433322    23478


Q ss_pred             EEEEEEecC
Q psy16868         78 YVEIVFDNT   86 (109)
Q Consensus        78 ~i~~~fq~~   86 (109)
                      .|++|+|+.
T Consensus       613 ~IGVVPQDt  621 (790)
T KOG0056|consen  613 SIGVVPQDT  621 (790)
T ss_pred             hcCcccCcc
Confidence            899999985

>KOG0055|consensus

Probab=99.20  E-value=8e-12  Score=97.32  Aligned_cols=78  Identities=14%  Similarity=0.219  Sum_probs=60.3

Q ss_pred             EEEEece-eecCCCe---eEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868          5 QVIIHGF-KSYKEQT---VVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV   75 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~---~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (109)
                      .|+++|. .+|..++   ++.+++     |+.++|+|||||||||++..|.++..|..|.+..++.+.    .....+..
T Consensus       350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di----~~~~~~~l  425 (1228)
T KOG0055|consen  350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDI----RNLNLKWL  425 (1228)
T ss_pred             ceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccc----hhcchHHH
Confidence            5788888 6786653   344444     899999999999999999999999999999998655322    22233445


Q ss_pred             eEEEEEEEecC
Q psy16868         76 NAYVEIVFDNT   86 (109)
Q Consensus        76 ~~~i~~~fq~~   86 (109)
                      +..|++|+|.|
T Consensus       426 r~~iglV~QeP  436 (1228)
T KOG0055|consen  426 RSQIGLVSQEP  436 (1228)
T ss_pred             HhhcCeeeech
Confidence            67899999997

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.20  E-value=7.7e-12  Score=100.68  Aligned_cols=78  Identities=17%  Similarity=0.259  Sum_probs=61.2

Q ss_pred             EEEEece-eecCCC--eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKEQ--TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~~--~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .|+++|+ .+|.+.  .++++++     |+.++|+|++|||||||+.+|.+++.+..|.+.+++.    ..........+
T Consensus      1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~----dI~~i~~~~LR 1359 (1522)
T TIGR00957      1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGL----NIAKIGLHDLR 1359 (1522)
T ss_pred             cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCE----EccccCHHHHH
Confidence            4888998 778653  3566666     8999999999999999999999999999999986553    22222333457


Q ss_pred             EEEEEEEecC
Q psy16868         77 AYVEIVFDNT   86 (109)
Q Consensus        77 ~~i~~~fq~~   86 (109)
                      ..|++++|+|
T Consensus      1360 ~~i~iVpQdp 1369 (1522)
T TIGR00957      1360 FKITIIPQDP 1369 (1522)
T ss_pred             hcCeEECCCC
Confidence            7899999997

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>KOG0058|consensus

Probab=99.19  E-value=1.4e-11  Score=91.70  Aligned_cols=78  Identities=14%  Similarity=0.155  Sum_probs=60.7

Q ss_pred             EEEEece-eecCCC---eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868          5 QVIIHGF-KSYKEQ---TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV   75 (109)
Q Consensus         5 ~i~i~n~-~~~~~~---~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (109)
                      .|+++|. ..|..+   .++++++     |+.++||||||+||||+...|..++.|++|.+..++.    ...+-+....
T Consensus       465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~----~i~~~~~~~l  540 (716)
T KOG0058|consen  465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGV----PISDINHKYL  540 (716)
T ss_pred             eEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCe----ehhhcCHHHH
Confidence            5788888 778665   3566665     8999999999999999999999999999999986553    2222233344


Q ss_pred             eEEEEEEEecC
Q psy16868         76 NAYVEIVFDNT   86 (109)
Q Consensus        76 ~~~i~~~fq~~   86 (109)
                      ++.|++|-|.|
T Consensus       541 r~~Ig~V~QEP  551 (716)
T KOG0058|consen  541 RRKIGLVGQEP  551 (716)
T ss_pred             HHHeeeeeccc
Confidence            67899998876

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.18  E-value=1.2e-11  Score=99.11  Aligned_cols=47  Identities=21%  Similarity=0.318  Sum_probs=40.0

Q ss_pred             EEEEece-eecCC---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868          5 QVIIHGF-KSYKE---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus         5 ~i~i~n~-~~~~~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      .|+++|+ .+|.+   ..++++++     |+.++|+||+|||||||++.|.+++.|
T Consensus      1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265       1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred             eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence            4888998 77853   34566666     899999999999999999999999998

>PLN03073 ABC transporter F family; Provisional

Probab=99.18  E-value=2.5e-11  Score=91.88  Aligned_cols=54  Identities=24%  Similarity=0.394  Sum_probs=43.4

Q ss_pred             eEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhh---ccCccccc
Q psy16868          4 KQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVL---SDESTSLR   57 (109)
Q Consensus         4 ~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l---~~~~~~~~   57 (109)
                      ..|+++|+ +.|.+..++++++     |+.++|+|+|||||||||++|+|..   .|..+.+.
T Consensus       176 ~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~  238 (718)
T PLN03073        176 KDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQIL  238 (718)
T ss_pred             eeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEE
Confidence            35889999 8897777777776     8899999999999999999999853   24455543

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.17  E-value=8.3e-12  Score=91.31  Aligned_cols=59  Identities=5%  Similarity=0.032  Sum_probs=42.4

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT   86 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~   86 (109)
                      |++++|+||||||||||+++|+|++.|..|.+.+.+..   +.........+..|++++|++
T Consensus       289 Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~---i~~~~~~~~~~~~i~~v~q~~  347 (510)
T PRK15439        289 GEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKE---INALSTAQRLARGLVYLPEDR  347 (510)
T ss_pred             CcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEE---CCCCCHHHHHhCCcEECCCCh
Confidence            89999999999999999999999999999998754421   111000001134688888864

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.17  E-value=1.3e-11  Score=78.94  Aligned_cols=93  Identities=16%  Similarity=0.191  Sum_probs=63.2

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccch---hhhhhhcCCC--Cc
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDS---RQALLHEGTG--PR   73 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~---~~~~~~~~~~--~~   73 (109)
                      -++++++ +.|.......+++     +++.+|+|++||||||||.+|++-+.|+.|.+.+...   ..++..-.+.  ..
T Consensus         6 LL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~   85 (258)
T COG4107           6 LLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRR   85 (258)
T ss_pred             ceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHH
Confidence            3677888 7787654343433     8999999999999999999999999999998764321   1111111111  12


Q ss_pred             eeeEEEEEEEecCCCCCceeEEEe
Q psy16868         74 VVNAYVEIVFDNTDHRVPGFIRCR   97 (109)
Q Consensus        74 ~~~~~i~~~fq~~~~~~~~~~~~~   97 (109)
                      ..+...++|-|+|.+.+...+...
T Consensus        86 L~RTeWG~VhQnP~DGLRm~VSAG  109 (258)
T COG4107          86 LLRTEWGFVHQNPRDGLRMQVSAG  109 (258)
T ss_pred             HhhhccceeecCccccceeeeccC
Confidence            224567999999977765555433

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.16  E-value=3.2e-11  Score=97.05  Aligned_cols=77  Identities=19%  Similarity=0.318  Sum_probs=59.4

Q ss_pred             EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .|+++|+ .+|.+  ..++++++     |+.++|+|++|||||||+.+|.+++. ..|.+.+++.    ..........+
T Consensus      1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~----di~~i~~~~lR 1291 (1490)
T TIGR01271      1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGV----SWNSVTLQTWR 1291 (1490)
T ss_pred             eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCE----EcccCCHHHHH
Confidence            5888998 77864  34677776     89999999999999999999999986 7898885553    11222333457


Q ss_pred             EEEEEEEecC
Q psy16868         77 AYVEIVFDNT   86 (109)
Q Consensus        77 ~~i~~~fq~~   86 (109)
                      ..|++++|+|
T Consensus      1292 ~~is~IpQdp 1301 (1490)
T TIGR01271      1292 KAFGVIPQKV 1301 (1490)
T ss_pred             hceEEEeCCC
Confidence            7899999997

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.15  E-value=2.9e-11  Score=96.74  Aligned_cols=74  Identities=9%  Similarity=0.126  Sum_probs=53.9

Q ss_pred             EEEece-eecC----CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhc---cCcccccccchhhhhhhcCCCC
Q psy16868          6 VIIHGF-KSYK----EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLS---DESTSLRHSDSRQALLHEGTGP   72 (109)
Q Consensus         6 i~i~n~-~~~~----~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~---~~~~~~~~~~~~~~~~~~~~~~   72 (109)
                      ++++|+ ..+.    ...++++++     |++++|+|||||||||||++|+|.+.   +..|.+.+++...    .    
T Consensus       760 l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~----~----  831 (1394)
T TIGR00956       760 FHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPL----D----  831 (1394)
T ss_pred             EEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEEC----C----
Confidence            567777 5553    345677776     78999999999999999999999987   4668877544311    1    


Q ss_pred             ceeeEEEEEEEecCC
Q psy16868         73 RVVNAYVEIVFDNTD   87 (109)
Q Consensus        73 ~~~~~~i~~~fq~~~   87 (109)
                      ...++.+++++|++.
T Consensus       832 ~~~~~~i~yv~Q~~~  846 (1394)
T TIGR00956       832 SSFQRSIGYVQQQDL  846 (1394)
T ss_pred             hhhhcceeeeccccc
Confidence            113567899999853

>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]

Probab=99.15  E-value=1.9e-11  Score=84.81  Aligned_cols=51  Identities=25%  Similarity=0.525  Sum_probs=43.9

Q ss_pred             CeeeEEEEeceeecCCCeeEecCC-CCceEEEecCCCCcchHHHHHHHhhccCc
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFD-KRHNVVVGRNGSGKSNFFFAIQFVLSDES   53 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~-~~~~~i~G~NG~GKStll~al~~~l~~~~   53 (109)
                      |++.+|.+.||+.|.+-. + .++ ++.+.|+||||+||||+|+||.-++.+-.
T Consensus         1 mrLrkiSl~nfr~f~~ld-i-tf~e~~ttIivgpNGsGKTtvLdair~aL~~fi   52 (440)
T COG3950           1 MRLRKISLNNFRCFLNLD-I-TFGESETTIIVGPNGSGKTTVLDAIRNALNKFI   52 (440)
T ss_pred             Cccchhhhhhhhhhhhce-e-ecCCCceEEEECCCCCChhhHHHHHHHHHHhhc
Confidence            889999999999998766 4 555 56999999999999999999999887543

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.14  E-value=9.9e-11  Score=85.91  Aligned_cols=53  Identities=21%  Similarity=0.320  Sum_probs=44.6

Q ss_pred             EEEEece-eecCCC-eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868          5 QVIIHGF-KSYKEQ-TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus         5 ~i~i~n~-~~~~~~-~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      .++++|+ +.|.+. .++.+++     ++.++|+||||+||||||+.|.+.+.+..|.+.
T Consensus       321 vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~  380 (530)
T COG0488         321 VLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVK  380 (530)
T ss_pred             eEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEE
Confidence            4778888 788653 5566666     899999999999999999999999999888765

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.12  E-value=3.8e-12  Score=83.45  Aligned_cols=63  Identities=21%  Similarity=0.177  Sum_probs=47.5

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCCCCCc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTDHRVP   91 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~~~~~   91 (109)
                      ++++.|+|.||||||||+.+|+|-+.+++|.+..++.+.    ...+...+...++-|||+|.....
T Consensus        32 g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dV----tk~~~~~RA~~larVfQdp~~gt~   94 (263)
T COG1101          32 GDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDV----TKKSVAKRANLLARVFQDPLAGTA   94 (263)
T ss_pred             CceEEEEcCCCccHHHHHHHhhCccccCCceEEECceec----ccCCHHHHhhHHHHHhcchhhCCc
Confidence            899999999999999999999999999999998554321    222222234457778999866543

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=2e-11  Score=88.51  Aligned_cols=56  Identities=20%  Similarity=0.354  Sum_probs=48.5

Q ss_pred             EEEEece-eecCCCe--eEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868          5 QVIIHGF-KSYKEQT--VVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD   60 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~--~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~   60 (109)
                      .++++|. ..|.+.+  ++++|+     |+.++|+|++||||||+++.|++.+.+++|.+..++
T Consensus       336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g  399 (573)
T COG4987         336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNG  399 (573)
T ss_pred             eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECC
Confidence            4788888 6787654  677776     899999999999999999999999999999998655

>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]

Probab=99.11  E-value=2e-10  Score=84.59  Aligned_cols=50  Identities=32%  Similarity=0.597  Sum_probs=46.1

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccC
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDE   52 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~   52 (109)
                      |+|+++++.||+++.+.. + .++++.++|||+|-+||||+|+||..++.+.
T Consensus         1 M~L~~v~I~nFR~i~~ls-l-~~~~g~~vlIGeN~~GKsslLdAL~l~l~~~   50 (581)
T COG3593           1 MHLERVKIKNFRGINRLS-L-EFEEGLNVLIGENNSGKSSLLDALRLLLDPE   50 (581)
T ss_pred             CcceeEEecccceeeeee-e-eecCCceEEEcCCCcchHHHHHHHHHHcCCc
Confidence            899999999999998877 5 7877899999999999999999999999875

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.11  E-value=2.5e-11  Score=82.02  Aligned_cols=36  Identities=25%  Similarity=0.247  Sum_probs=33.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD   60 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~   60 (109)
                      |++++++|+|||||||+|++|.|++.|++|.+...+
T Consensus        50 G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G   85 (325)
T COG4586          50 GEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNG   85 (325)
T ss_pred             CcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecC
Confidence            899999999999999999999999999999988544

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.11  E-value=9.7e-11  Score=78.90  Aligned_cols=57  Identities=18%  Similarity=0.157  Sum_probs=44.9

Q ss_pred             EEEEece-eecCC---------CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccch
Q psy16868          5 QVIIHGF-KSYKE---------QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDS   61 (109)
Q Consensus         5 ~i~i~n~-~~~~~---------~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~   61 (109)
                      -++++|+ +.|..         ..++++++     ++..+|+|+|||||||+-++|.+++.|+.|.+.+.+.
T Consensus         4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~   75 (268)
T COG4608           4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGK   75 (268)
T ss_pred             eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCc
Confidence            3667776 44432         23455555     8999999999999999999999999999999987654

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.10  E-value=1.3e-10  Score=72.76  Aligned_cols=56  Identities=18%  Similarity=0.229  Sum_probs=41.5

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCc---ccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDES---TSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT   86 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~   86 (109)
                      |+++.|.||+|||||||+..+.|.+.+..   |.+..+++..+      ..+...+.|++.||++
T Consensus        28 GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~------~lPa~qRq~GiLFQD~   86 (213)
T COG4136          28 GEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLD------MLPAAQRQIGILFQDA   86 (213)
T ss_pred             CcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeecc------ccchhhhheeeeeccc
Confidence            89999999999999999999999998764   44432332111      1233367899999986

>PF13175 AAA_15: AAA ATPase domain

Probab=99.10  E-value=1e-10  Score=82.83  Aligned_cols=48  Identities=31%  Similarity=0.625  Sum_probs=40.5

Q ss_pred             eeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868          3 IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus         3 i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      |++++++|||+|++...+ +++.++++|+|.|||||||+|+||..+..+
T Consensus         1 ik~i~IkNfR~i~~~~~i-~~~~~itiiiG~N~sGKT~IL~aL~~~~~~   48 (415)
T PF13175_consen    1 IKKIRIKNFRSIKDSGEI-NFDEDITIIIGENNSGKTNILEALDLFFNG   48 (415)
T ss_pred             CcEEEEecccccCcccee-ecCCceEEEEccCCCCHHHHHHHHHHhcCc
Confidence            568999999999988326 887789999999999999999999555443

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.10  E-value=1.3e-10  Score=93.76  Aligned_cols=53  Identities=17%  Similarity=0.282  Sum_probs=44.3

Q ss_pred             EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868          5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus         5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      .++++|. ..|.+  ..++++++     |+.++|+||||||||||+++|.|.+.+..|.+.
T Consensus       636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~  696 (1522)
T TIGR00957       636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVH  696 (1522)
T ss_pred             cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEE
Confidence            4788888 67753  33566665     899999999999999999999999999999876

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG1106 Predicted ATPases [General function prediction only]

Probab=99.08  E-value=8.5e-11  Score=82.64  Aligned_cols=47  Identities=40%  Similarity=0.683  Sum_probs=41.1

Q ss_pred             eeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhc
Q psy16868          2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus         2 ~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ||.+++++||++|++.. +.++ +.+++|+|+||||||+|++||..+..
T Consensus         1 MI~~~~IkNFkSf~e~~-~~~~-~~in~I~G~N~sGKSNlleAl~f~~~   47 (371)
T COG1106           1 MIKSFKIKNFKSFRELE-LEDF-GKINIIYGANGAGKSNLLEALYFLKG   47 (371)
T ss_pred             CceEEEecccccHHHhh-hccc-cceEEEEcCCCCchhHHHHHHHHHHH
Confidence            47899999999999877 4455 69999999999999999999988764

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.07  E-value=4.1e-11  Score=83.37  Aligned_cols=52  Identities=15%  Similarity=0.213  Sum_probs=39.1

Q ss_pred             EEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868         30 VVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD   87 (109)
Q Consensus        30 i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~   87 (109)
                      |+||||||||||+++|+|++.+..|.+.+.+...    ...  ....+.|+++||++.
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i----~~~--~~~~~~i~~v~q~~~   52 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV----TNV--PPHLRHINMVFQSYA   52 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEEC----CCC--CHHHCCEEEEecCcc
Confidence            5899999999999999999999999988555311    111  112456999999863

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK13409 putative ATPase RIL; Provisional

Probab=99.07  E-value=1.1e-10  Score=86.91  Aligned_cols=46  Identities=15%  Similarity=0.135  Sum_probs=38.1

Q ss_pred             eecCCC-eeEecCC----CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868         12 KSYKEQ-TVVEPFD----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus        12 ~~~~~~-~~l~~~~----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      ..|+.. .++++++    |++++|+||||||||||+++|+|++.|..|.+.
T Consensus        81 ~~yg~~~~~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~  131 (590)
T PRK13409         81 HRYGVNGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYE  131 (590)
T ss_pred             EEecCCceeEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCcccc
Confidence            356542 3466665    789999999999999999999999999999975

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.06  E-value=1.5e-11  Score=84.55  Aligned_cols=62  Identities=18%  Similarity=0.215  Sum_probs=46.7

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT   86 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~   86 (109)
                      |++.+|.|-+|||||||+++|+.+..|+.|.+.+.+.+..-.....-..-++..++||||+.
T Consensus        54 GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~F  115 (386)
T COG4175          54 GEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSF  115 (386)
T ss_pred             CeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhh
Confidence            89999999999999999999999999999998866542211111111223367899999986

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.03  E-value=2.4e-10  Score=92.12  Aligned_cols=45  Identities=24%  Similarity=0.341  Sum_probs=38.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT   86 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~   86 (109)
                      |++++|+|||||||||||++|.|.+.+..|.+.+.+                 .|++++|++
T Consensus       452 G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-----------------~iayv~Q~~  496 (1490)
T TIGR01271       452 GQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-----------------RISFSPQTS  496 (1490)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-----------------EEEEEeCCC
Confidence            899999999999999999999999999999876322                 377888775

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>KOG0055|consensus

Probab=99.02  E-value=1.8e-10  Score=89.93  Aligned_cols=78  Identities=13%  Similarity=0.221  Sum_probs=61.7

Q ss_pred             EEEEece-eecCCC---eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868          5 QVIIHGF-KSYKEQ---TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV   75 (109)
Q Consensus         5 ~i~i~n~-~~~~~~---~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (109)
                      .|+++|. ..|..+   .++.+++     |+.++||||+||||||++..|...++|..|.+..++.    ...+.+....
T Consensus       987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~----dik~lnl~~L 1062 (1228)
T KOG0055|consen  987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGV----DIKDLNLKWL 1062 (1228)
T ss_pred             EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCc----ccccCCHHHH
Confidence            5888888 778664   3555665     8999999999999999999999999999999985542    2234444556


Q ss_pred             eEEEEEEEecC
Q psy16868         76 NAYVEIVFDNT   86 (109)
Q Consensus        76 ~~~i~~~fq~~   86 (109)
                      +..+++|-|.|
T Consensus      1063 R~~i~lVsQEP 1073 (1228)
T KOG0055|consen 1063 RKQIGLVSQEP 1073 (1228)
T ss_pred             HHhcceeccCc
Confidence            78899999987

>COG4637 Predicted ATPase [General function prediction only]

Probab=99.02  E-value=7.3e-11  Score=81.06  Aligned_cols=53  Identities=28%  Similarity=0.630  Sum_probs=44.4

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccc
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSL   56 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~   56 (109)
                      |++..|.++||+++++.. + ++ ..+++|+|.||+||||+++++..+-..-.|.+
T Consensus         1 ~~l~si~vknyRs~r~l~-l-ei-~~~nviIGANGaGKSn~~~~l~~l~~a~~g~l   53 (373)
T COG4637           1 MMLVSIKVKNYRSFRSLD-L-EI-RRVNVIIGANGAGKSNFYDALRLLADAVRGNL   53 (373)
T ss_pred             CccchhhhhcchhHHhcc-c-cc-cceEEEEcCCCCchhHHHHHHHHHHHHHhhhH
Confidence            889999999999998765 4 55 48999999999999999999988866555543

>KOG0054|consensus

Probab=99.01  E-value=2.1e-10  Score=90.87  Aligned_cols=78  Identities=15%  Similarity=0.276  Sum_probs=62.6

Q ss_pred             EEEEece-eecCCC--eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKEQ--TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~~--~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      +|+++|+ .+|++.  .++++++     ++.++|+|+.|||||||+.||-.+..+..|+|..++    +....-.....+
T Consensus      1138 ~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDg----vdI~~igL~dLR 1213 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDG----VDISKIGLHDLR 1213 (1381)
T ss_pred             eEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcC----eecccccHHHHH
Confidence            5889999 778765  4566665     789999999999999999999999999999998544    333334444568


Q ss_pred             EEEEEEEecC
Q psy16868         77 AYVEIVFDNT   86 (109)
Q Consensus        77 ~~i~~~fq~~   86 (109)
                      .++++++|+|
T Consensus      1214 srlsIIPQdP 1223 (1381)
T KOG0054|consen 1214 SRLSIIPQDP 1223 (1381)
T ss_pred             hcCeeeCCCC
Confidence            8999999997

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.01  E-value=3.4e-10  Score=80.13  Aligned_cols=57  Identities=21%  Similarity=0.357  Sum_probs=45.8

Q ss_pred             eEEEEece-eecCCCe-eEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868          4 KQVIIHGF-KSYKEQT-VVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD   60 (109)
Q Consensus         4 ~~i~i~n~-~~~~~~~-~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~   60 (109)
                      +.|+++|. ..|.+.. .+.+++     |+++.|+|.|||||||++..|.|+..|++|.+..++
T Consensus       321 ~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg  384 (546)
T COG4615         321 KTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG  384 (546)
T ss_pred             cceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECC
Confidence            46888888 5676542 122333     899999999999999999999999999999988655

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=98.99  E-value=2.1e-10  Score=82.88  Aligned_cols=78  Identities=13%  Similarity=0.164  Sum_probs=55.5

Q ss_pred             EEEEeceeecC---CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGFKSYK---EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~~~~~---~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .+.++++....   ++.++.+++     |+..+|+||+|||||||.++|.|...|..|.+++++-  ++.  ..+.....
T Consensus       334 ~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga--~l~--qWd~e~lG  409 (580)
T COG4618         334 ALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGA--DLR--QWDREQLG  409 (580)
T ss_pred             eeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecch--hhh--cCCHHHhc
Confidence            35556553221   123345554     8999999999999999999999999999999996552  122  23333456


Q ss_pred             EEEEEEEecC
Q psy16868         77 AYVEIVFDNT   86 (109)
Q Consensus        77 ~~i~~~fq~~   86 (109)
                      +.|+|.+|+-
T Consensus       410 ~hiGYLPQdV  419 (580)
T COG4618         410 RHIGYLPQDV  419 (580)
T ss_pred             cccCcCcccc
Confidence            7899999975

>PLN03140 ABC transporter G family member; Provisional

Probab=98.99  E-value=2.5e-10  Score=91.75  Aligned_cols=63  Identities=19%  Similarity=0.245  Sum_probs=46.4

Q ss_pred             CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC---cccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868         17 QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE---STSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT   86 (109)
Q Consensus        17 ~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~   86 (109)
                      ..++++++     |++++|+|||||||||||++|+|.+.+.   .|.+.+++...    ...   ..+..+++++|++
T Consensus       178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~----~~~---~~~~~i~yv~Q~d  248 (1470)
T PLN03140        178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRL----NEF---VPRKTSAYISQND  248 (1470)
T ss_pred             ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEec----hhh---cccceeEEecccc
Confidence            34566666     8899999999999999999999999887   78877544211    111   1145689999975

>PLN03130 ABC transporter C family member; Provisional

Probab=98.98  E-value=8.9e-10  Score=89.40  Aligned_cols=65  Identities=20%  Similarity=0.245  Sum_probs=51.7

Q ss_pred             EEEEece-eecCC---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCc-ccccccchhhhhhhcCCCCce
Q psy16868          5 QVIIHGF-KSYKE---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDES-TSLRHSDSRQALLHEGTGPRV   74 (109)
Q Consensus         5 ~i~i~n~-~~~~~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~   74 (109)
                      .|+++|. ..|.+   ..++++++     |+.++|+||+|||||||+++|.|.+.+.. |.+.                 
T Consensus       614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~-----------------  676 (1622)
T PLN03130        614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV-----------------  676 (1622)
T ss_pred             ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEE-----------------
Confidence            4788887 67753   33566665     89999999999999999999999999988 7764                 


Q ss_pred             eeEEEEEEEecC
Q psy16868         75 VNAYVEIVFDNT   86 (109)
Q Consensus        75 ~~~~i~~~fq~~   86 (109)
                      .+..|+++.|++
T Consensus       677 l~~~Iayv~Q~p  688 (1622)
T PLN03130        677 IRGTVAYVPQVS  688 (1622)
T ss_pred             EcCeEEEEcCcc
Confidence            134688888876

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=98.98  E-value=1.3e-10  Score=86.82  Aligned_cols=64  Identities=17%  Similarity=0.215  Sum_probs=45.9

Q ss_pred             CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC---cccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868         17 QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE---STSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD   87 (109)
Q Consensus        17 ~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~   87 (109)
                      +.++++++     |++++|+|||||||||||++|+|...+.   .|.+.+++....       ....++.+++++|++.
T Consensus        38 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~-------~~~~~~~i~yv~Q~~~  109 (617)
T TIGR00955        38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID-------AKEMRAISAYVQQDDL  109 (617)
T ss_pred             cccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC-------HHHHhhhceeeccccc
Confidence            34566666     8899999999999999999999988764   566664442111       1122456899999863

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.97  E-value=1.8e-10  Score=81.61  Aligned_cols=96  Identities=18%  Similarity=0.207  Sum_probs=65.0

Q ss_pred             EEEEece-eecC----CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccC-----cccccccchhhhhhhcC
Q psy16868          5 QVIIHGF-KSYK----EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDE-----STSLRHSDSRQALLHEG   69 (109)
Q Consensus         5 ~i~i~n~-~~~~----~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~-----~~~~~~~~~~~~~~~~~   69 (109)
                      -+.++|+ ..|.    ...++++++     |+..+|+|++|||||-...+|.++++..     +|.+.+.+..  ++...
T Consensus         6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~d--ll~~s   83 (534)
T COG4172           6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGED--LLAAS   83 (534)
T ss_pred             ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChh--hhcCC
Confidence            5778887 5665    344555554     8999999999999999999999999742     3555555431  22111


Q ss_pred             --CCCceeeEEEEEEEecCCCCCceeEEEeeccee
Q psy16868         70 --TGPRVVNAYVEIVFDNTDHRVPGFIRCRSTSVD  102 (109)
Q Consensus        70 --~~~~~~~~~i~~~fq~~~~~~~~~~~~~~~~~~  102 (109)
                        .-..-+..+|+|+||.|...+.+..++..+..+
T Consensus        84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E  118 (534)
T COG4172          84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAE  118 (534)
T ss_pred             HHHHhhhcccceEEEecccccccCcHhHHHHHHHH
Confidence              112223467999999999888766655555444

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=98.97  E-value=4.8e-10  Score=70.91  Aligned_cols=52  Identities=29%  Similarity=0.406  Sum_probs=38.7

Q ss_pred             EEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868          6 VIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus         6 i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      +.+.+|+.|.....+...++.+++|+||||+||||+++++.+++....+...
T Consensus         2 i~~~~~~~~~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~   53 (162)
T cd03227           2 IVLGRFPSYFVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATR   53 (162)
T ss_pred             ceeCCCCEEEeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            5667787765544452233459999999999999999999999887665543

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>PLN03140 ABC transporter G family member; Provisional

Probab=98.95  E-value=7.4e-10  Score=89.10  Aligned_cols=63  Identities=11%  Similarity=0.080  Sum_probs=44.1

Q ss_pred             eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc--CcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868         18 TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD--ESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD   87 (109)
Q Consensus        18 ~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~   87 (109)
                      .++++++     |++++|+|||||||||||++|+|...+  ..|.+.+++..       ......++.+++++|++.
T Consensus       894 ~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~-------~~~~~~~~~igyv~Q~d~  963 (1470)
T PLN03140        894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP-------KKQETFARISGYCEQNDI  963 (1470)
T ss_pred             eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc-------CChHHhhhheEEEccccc
Confidence            4677776     789999999999999999999998653  35665533311       011112356899999853

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=98.94  E-value=5.7e-10  Score=89.51  Aligned_cols=64  Identities=19%  Similarity=0.212  Sum_probs=46.0

Q ss_pred             eeEecCC-----CCceEEEecCCCCcchHHHHHHHhh----ccCcccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868         18 TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVL----SDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT   86 (109)
Q Consensus        18 ~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~   86 (109)
                      .++++++     |++++|+|||||||||||++|+|.+    .+..|.+.+++......    . ...+..+++++|++
T Consensus        75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~----~-~~~r~~i~yv~Q~d  147 (1394)
T TIGR00956        75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEI----K-KHYRGDVVYNAETD  147 (1394)
T ss_pred             eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHH----H-hhcCceeEEecccc
Confidence            4566666     8899999999999999999999987    35678887655321100    0 11245699999975

>PLN03232 ABC transporter C family member; Provisional

Probab=98.94  E-value=1.2e-09  Score=88.24  Aligned_cols=66  Identities=23%  Similarity=0.248  Sum_probs=51.1

Q ss_pred             EEEEece-eecCC---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868          5 QVIIHGF-KSYKE---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV   75 (109)
Q Consensus         5 ~i~i~n~-~~~~~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (109)
                      .++++|. ..|..   ..++++++     |+.++|+||+|||||||+++|.|.+.+..|.+.                ..
T Consensus       614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~----------------~~  677 (1495)
T PLN03232        614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV----------------VI  677 (1495)
T ss_pred             cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE----------------Ee
Confidence            4778887 67753   33566666     899999999999999999999999998877532                12


Q ss_pred             eEEEEEEEecC
Q psy16868         76 NAYVEIVFDNT   86 (109)
Q Consensus        76 ~~~i~~~fq~~   86 (109)
                      +..|+++.|++
T Consensus       678 ~~~Iayv~Q~p  688 (1495)
T PLN03232        678 RGSVAYVPQVS  688 (1495)
T ss_pred             cCcEEEEcCcc
Confidence            34688888876

>KOG0250|consensus

Probab=98.94  E-value=4.6e-09  Score=80.96  Aligned_cols=79  Identities=27%  Similarity=0.465  Sum_probs=63.9

Q ss_pred             eeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEE
Q psy16868          2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEI   81 (109)
Q Consensus         2 ~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   81 (109)
                      +|..|++.||.++.+.. + .|...++.|+|+||||||-+|-||+..+.........+....+++.++..    .+.|.+
T Consensus        41 ~I~sI~L~NFMCHsnL~-I-eFg~~vNfI~G~NGSGKSAIltAl~lglG~rAs~tnRgsslK~lIK~G~~----~A~IsI  114 (1074)
T KOG0250|consen   41 KIESIHLTNFMCHSNLL-I-EFGPRVNFIVGNNGSGKSAILTALTLGLGGRASATNRGSSLKDLIKDGCS----SAKISI  114 (1074)
T ss_pred             eEEEEEEeeecccccce-e-ccCCCceEeecCCCCcHHHHHHHHHHhhccccccccchhhHHHHHhCCCc----ceEEEE
Confidence            46789999998888775 5 88888999999999999999999999998765544435556778888876    678888


Q ss_pred             EEecC
Q psy16868         82 VFDNT   86 (109)
Q Consensus        82 ~fq~~   86 (109)
                      +..+.
T Consensus       115 tL~N~  119 (1074)
T KOG0250|consen  115 TLSNS  119 (1074)
T ss_pred             EEecC
Confidence            88774

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.93  E-value=4.9e-10  Score=71.88  Aligned_cols=29  Identities=34%  Similarity=0.267  Sum_probs=24.4

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      +++++|+|||||||||||++|.    +..|.+.
T Consensus        21 G~~~~l~G~nG~GKSTLl~~il----~~~G~v~   49 (176)
T cd03238          21 NVLVVVTGVSGSGKSTLVNEGL----YASGKAR   49 (176)
T ss_pred             CCEEEEECCCCCCHHHHHHHHh----hcCCcEE
Confidence            7899999999999999999984    2456654

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PTZ00243 ABC transporter; Provisional

Probab=98.93  E-value=1e-09  Score=88.85  Aligned_cols=55  Identities=16%  Similarity=0.215  Sum_probs=44.1

Q ss_pred             CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868         16 EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD   87 (109)
Q Consensus        16 ~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~   87 (109)
                      +..++++++     |++++|+|||||||||||++|.|.+.+..|.+..                 ...|++++|++.
T Consensus       672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~-----------------~~~i~yv~Q~~~  731 (1560)
T PTZ00243        672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWA-----------------ERSIAYVPQQAW  731 (1560)
T ss_pred             CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE-----------------CCeEEEEeCCCc
Confidence            334455554     8999999999999999999999999999898651                 135889998863

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=98.91  E-value=1.3e-09  Score=64.51  Aligned_cols=22  Identities=23%  Similarity=0.445  Sum_probs=20.6

Q ss_pred             CCceEEEecCCCCcchHHHHHH
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQ   46 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~   46 (109)
                      ++.++|+||||||||||++++.
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh
Confidence            6899999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.86  E-value=4.6e-09  Score=67.79  Aligned_cols=33  Identities=18%  Similarity=0.432  Sum_probs=29.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      ++.++|+|||||||||++++|++++.+..+.+.
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~   57 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFIPPDERIIT   57 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEE
Confidence            788999999999999999999999988777665

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.82  E-value=3.3e-08  Score=72.64  Aligned_cols=71  Identities=28%  Similarity=0.472  Sum_probs=55.9

Q ss_pred             eeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEE
Q psy16868          2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEI   81 (109)
Q Consensus         2 ~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   81 (109)
                      |+..|+|+||--+.... + +|..++++|+|+.|+|||-+++||..++......        ++++.+..    ++.|..
T Consensus         1 ML~~LsIknfaiIe~L~-l-eF~~GltVlTGETGAGKSIiidAl~lllG~ra~~--------~~VR~G~~----~a~v~a   66 (557)
T COG0497           1 MLLELSIKNFAIIEELE-L-EFEKGLTVLTGETGAGKSIIIDALGLLLGGRADA--------SLVRHGAK----RAEVEA   66 (557)
T ss_pred             CCcEEeeeheeeeeeee-e-eccCCceEEecCCCCcHhHHHHHHHHHhCCCCCc--------chhcCCCc----eeEEEE
Confidence            36789999998777766 5 8889999999999999999999999998765332        14555554    677777


Q ss_pred             EEecC
Q psy16868         82 VFDNT   86 (109)
Q Consensus        82 ~fq~~   86 (109)
                      +|..+
T Consensus        67 ~F~~~   71 (557)
T COG0497          67 IFDLD   71 (557)
T ss_pred             EecCC
Confidence            77665

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.77  E-value=5.2e-09  Score=68.33  Aligned_cols=25  Identities=36%  Similarity=0.464  Sum_probs=23.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +++++|+||||||||||+++|++..
T Consensus        25 g~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          25 KNGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             CcEEEEECCCCCChHHHHHHHHHHH
Confidence            6799999999999999999998765

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.76  E-value=3.5e-08  Score=79.28  Aligned_cols=49  Identities=22%  Similarity=0.257  Sum_probs=40.0

Q ss_pred             eeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHh-hccC
Q psy16868          2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFV-LSDE   52 (109)
Q Consensus         2 ~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~-l~~~   52 (109)
                      ++.++-+.||..|.+.. + +|+++.++|+|+|||||||+|++|..+ +.+.
T Consensus         3 ~~~R~gliN~~~~~~~~-~-~f~~g~~~~~G~NGsGKS~~lda~~~~ll~~~   52 (1353)
T TIGR02680         3 RPHRAGLVNLWYYDEQE-F-WFRDGRLLLRGNNGAGKSKVLELLLPFLLDGK   52 (1353)
T ss_pred             eeeeEEEEEeccccceE-E-ecCCCeEEEECCCCCcHHHHHHHHHHHHhcCC
Confidence            35678899998888765 6 898899999999999999999996644 4443

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG0059|consensus

Probab=98.75  E-value=4.1e-09  Score=81.63  Aligned_cols=80  Identities=15%  Similarity=0.130  Sum_probs=56.0

Q ss_pred             eEEEEece-eecCCCe-eEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          4 KQVIIHGF-KSYKEQT-VVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         4 ~~i~i~n~-~~~~~~~-~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      ..+.+.|+ +.|.... +++.++     ++..++.|+|||||||++++|.|...++.|.+...+.   -+..........
T Consensus       563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~---~i~~~~~~~~~~  639 (885)
T KOG0059|consen  563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGH---DITVSTDFQQVR  639 (885)
T ss_pred             ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecC---ccccccchhhhh
Confidence            45677777 5665543 333333     8999999999999999999999999999998774321   111111222246


Q ss_pred             EEEEEEEecC
Q psy16868         77 AYVEIVFDNT   86 (109)
Q Consensus        77 ~~i~~~fq~~   86 (109)
                      +.+++++|..
T Consensus       640 ~~iGyCPQ~d  649 (885)
T KOG0059|consen  640 KQLGYCPQFD  649 (885)
T ss_pred             hhcccCCchh
Confidence            7799999984

>KOG0061|consensus

Probab=98.74  E-value=6.6e-09  Score=77.74  Aligned_cols=63  Identities=17%  Similarity=0.215  Sum_probs=45.8

Q ss_pred             CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc---CcccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868         17 QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD---ESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT   86 (109)
Q Consensus        17 ~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~   86 (109)
                      ++++++++     |++++|.||+||||||||++|+|-..+   ..|.+..++.       ....+..+..+++|.|++
T Consensus        43 k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~-------~~~~~~~~~~s~yV~QdD  113 (613)
T KOG0061|consen   43 KTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR-------PRDSRSFRKISGYVQQDD  113 (613)
T ss_pred             ceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc-------cCchhhhhheeEEEcccc
Confidence            45677776     789999999999999999999998874   3556553331       122233466789999875

>KOG0927|consensus

Probab=98.73  E-value=7.3e-09  Score=75.54  Aligned_cols=33  Identities=27%  Similarity=0.303  Sum_probs=31.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      ...+++||||||||||||+.+++.+.|..|.+.
T Consensus       416 ~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs  448 (614)
T KOG0927|consen  416 DSRVALVGPNGAGKSTLLKLITGDLQPTIGMVS  448 (614)
T ss_pred             ccceeEecCCCCchhhhHHHHhhcccccccccc
Confidence            578999999999999999999999999999876

>KOG0962|consensus

Probab=98.73  E-value=9.6e-09  Score=80.68  Aligned_cols=89  Identities=21%  Similarity=0.433  Sum_probs=58.9

Q ss_pred             eeEEEEeceeecCCC--eeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCC--CCceeeEE
Q psy16868          3 IKQVIIHGFKSYKEQ--TVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGT--GPRVVNAY   78 (109)
Q Consensus         3 i~~i~i~n~~~~~~~--~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~   78 (109)
                      |.++.|.+.++|++.  +.+ .|..++++|+||||+||||++++|-.+..+....-. .  ...++.+..  ......+.
T Consensus         4 i~klsI~GIRSf~~~d~~~i-~F~sPlTLIvG~NG~GKTTiIEcLKyatTG~lPpns-k--~~~FiHdpkIage~ev~Aq   79 (1294)
T KOG0962|consen    4 IDKLSIRGIRSFDDKDRNTI-EFFSPLTLIVGANGTGKTTIIECLKYATTGELPPNS-K--GGSFIHDPKVAGETEVRAQ   79 (1294)
T ss_pred             hHhhHhhcccccCCccccee-eecCCeeeEecCCCCCchhHHHHHHHHhcCcCCCCC-c--CCCCCCCccccchhhhhhe
Confidence            556788889888764  445 555799999999999999999999887753322110 0  012333322  12344688


Q ss_pred             EEEEEecCCCCCceeEE
Q psy16868         79 VEIVFDNTDHRVPGFIR   95 (109)
Q Consensus        79 i~~~fq~~~~~~~~~~~   95 (109)
                      |.+-|.+.++..-...+
T Consensus        80 vkL~f~~~~G~~~~~~R   96 (1294)
T KOG0962|consen   80 VKLAFTDVNGETMICTR   96 (1294)
T ss_pred             eeeeeecCCCcEEEeeh
Confidence            99999988777644433

>KOG0062|consensus

Probab=98.73  E-value=6.7e-09  Score=75.34  Aligned_cols=43  Identities=33%  Similarity=0.499  Sum_probs=35.1

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHH
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~   47 (109)
                      .|.+.+| ..|+.+.++..-+     |...+|+|+||+||||||+||+-
T Consensus        80 Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~  128 (582)
T KOG0062|consen   80 DIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN  128 (582)
T ss_pred             ceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence            5777888 7888776553333     78899999999999999999987

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=98.68  E-value=1e-08  Score=65.88  Aligned_cols=35  Identities=29%  Similarity=0.349  Sum_probs=29.3

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD   60 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~   60 (109)
                      |++.-++||||||||||+-+++|+++. +|.+.+.+
T Consensus        25 Ge~~HliGPNGaGKSTLLA~lAGm~~~-sGsi~~~G   59 (248)
T COG4138          25 GEILHLVGPNGAGKSTLLARMAGMTSG-SGSIQFAG   59 (248)
T ss_pred             ceEEEEECCCCccHHHHHHHHhCCCCC-CceEEECC
Confidence            788889999999999999999999765 46666554

>COG3910 Predicted ATPase [General function prediction only]

Probab=98.65  E-value=1.9e-08  Score=65.07  Aligned_cols=29  Identities=34%  Similarity=0.488  Sum_probs=26.1

Q ss_pred             cCCCCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         22 PFDKRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        22 ~~~~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +|...++.|+|.||+||||||+||+-...
T Consensus        34 eF~apIT~i~GENGsGKSTLLEaiA~~~~   62 (233)
T COG3910          34 EFRAPITFITGENGSGKSTLLEAIAAGMG   62 (233)
T ss_pred             cccCceEEEEcCCCccHHHHHHHHHhhcc
Confidence            56689999999999999999999987765

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=1.3e-08  Score=72.59  Aligned_cols=77  Identities=17%  Similarity=0.232  Sum_probs=54.7

Q ss_pred             EEEece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          6 VIIHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         6 i~i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      +.+.+. ..|.. +..+.+++     ++.++++|++|+||||+++.|...+++++|.+..++++...+.    ....++.
T Consensus       263 v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vt----q~slR~a  338 (497)
T COG5265         263 VAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVT----QQSLRRA  338 (497)
T ss_pred             EEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhH----HHHHHHH
Confidence            344444 34443 33444444     7899999999999999999999999999999886655332222    2234678


Q ss_pred             EEEEEecC
Q psy16868         79 VEIVFDNT   86 (109)
Q Consensus        79 i~~~fq~~   86 (109)
                      |++++|+.
T Consensus       339 Ig~VPQDt  346 (497)
T COG5265         339 IGIVPQDT  346 (497)
T ss_pred             hCcCcccc
Confidence            99999985

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.64  E-value=2.5e-08  Score=63.82  Aligned_cols=34  Identities=21%  Similarity=0.229  Sum_probs=31.7

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRH   58 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~   58 (109)
                      |+.+++.||+|+||||||++|++-+.+..|.+..
T Consensus        37 GECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v   70 (235)
T COG4778          37 GECVVLHGPSGSGKSTLLRSLYANYLPDEGQILV   70 (235)
T ss_pred             ccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEE
Confidence            8999999999999999999999999999998763

>KOG2355|consensus

Probab=98.63  E-value=3.7e-08  Score=64.78  Aligned_cols=53  Identities=19%  Similarity=0.317  Sum_probs=38.1

Q ss_pred             EEEEece-eecCCC-eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868          5 QVIIHGF-KSYKEQ-TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus         5 ~i~i~n~-~~~~~~-~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      .|+++|+ ..|... ..+.+|+     +....++|.|||||||||+.|+|----..+.+.
T Consensus        13 aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~   72 (291)
T KOG2355|consen   13 AIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQ   72 (291)
T ss_pred             eEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEE
Confidence            5788888 667654 3344665     678889999999999999999885433334443

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.62  E-value=2.1e-08  Score=64.66  Aligned_cols=27  Identities=22%  Similarity=0.316  Sum_probs=24.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      +.+++|+||||||||||+++|+..+.+
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~   28 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQT   28 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence            467899999999999999999888754

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=98.61  E-value=5.6e-08  Score=72.12  Aligned_cols=53  Identities=13%  Similarity=0.273  Sum_probs=39.3

Q ss_pred             EEEEece-eecCCC-eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868          5 QVIIHGF-KSYKEQ-TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus         5 ~i~i~n~-~~~~~~-~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      .|+++|+ ....+. ..+.+.+     |+...|.|+||||||||++||+|+-+..+|.+.
T Consensus       392 ~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~  451 (604)
T COG4178         392 GITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRIS  451 (604)
T ss_pred             eeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCcee
Confidence            4666776 333332 2233333     899999999999999999999999987778765

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=98.61  E-value=7.1e-09  Score=67.97  Aligned_cols=23  Identities=57%  Similarity=0.868  Sum_probs=0.0

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +++|+|+|||||||+|+||..++
T Consensus         1 i~viiG~N~sGKS~il~ai~~~~   23 (303)
T PF13304_consen    1 INVIIGPNGSGKSNILEAIYFLF   23 (303)
T ss_dssp             -----------------------
T ss_pred             CCccccccccccccccccccccc
Confidence            47899999999999999999885

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=98.58  E-value=3.5e-08  Score=64.36  Aligned_cols=25  Identities=28%  Similarity=0.460  Sum_probs=22.4

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++.++|+||||+||||+|++|++..
T Consensus        29 ~~~~~l~G~Ng~GKStll~~i~~~~   53 (202)
T cd03243          29 GRLLLITGPNMGGKSTYLRSIGLAV   53 (202)
T ss_pred             CeEEEEECCCCCccHHHHHHHHHHH
Confidence            5799999999999999999999543

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>KOG0927|consensus

Probab=98.57  E-value=6.6e-08  Score=70.68  Aligned_cols=52  Identities=27%  Similarity=0.345  Sum_probs=38.9

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccc
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSL   56 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~   56 (109)
                      -+++.|+ .+|....++.+..     ++.++|+|+|||||||+|++|++...|...++
T Consensus        75 dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~  132 (614)
T KOG0927|consen   75 DVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHI  132 (614)
T ss_pred             cceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCccc
Confidence            3566666 5565554443332     88999999999999999999999988765543

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.57  E-value=1.9e-08  Score=72.91  Aligned_cols=34  Identities=15%  Similarity=0.118  Sum_probs=28.2

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcc-cccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDEST-SLRHSD   60 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~-~~~~~~   60 (109)
                      |++++|+|||||||||||+  .++..+..| .+.+.+
T Consensus        32 GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg   66 (504)
T TIGR03238        32 SSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDA   66 (504)
T ss_pred             CCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECC
Confidence            8999999999999999999  567777777 466444

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.54  E-value=5.5e-08  Score=62.39  Aligned_cols=27  Identities=30%  Similarity=0.338  Sum_probs=24.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      +++++|+|+||||||||+++|++++.+
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l~~   29 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALFSA   29 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            678999999999999999999998865

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.52  E-value=5.3e-08  Score=66.36  Aligned_cols=35  Identities=14%  Similarity=0.252  Sum_probs=31.2

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD   60 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~   60 (109)
                      ..++|+||||||||||+++|++++.+..|.+.+.+
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g  146 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRG  146 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECC
Confidence            46799999999999999999999999999877554

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>TIGR00235 udk uridine kinase

Probab=98.51  E-value=5.4e-08  Score=63.72  Aligned_cols=27  Identities=26%  Similarity=0.139  Sum_probs=24.7

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      +.+++|+|+||||||||+++|++++.+
T Consensus         6 g~vi~I~G~sGsGKSTl~~~l~~~l~~   32 (207)
T TIGR00235         6 GIIIGIGGGSGSGKTTVARKIYEQLGK   32 (207)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            578999999999999999999998864

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.51  E-value=5e-08  Score=64.77  Aligned_cols=18  Identities=39%  Similarity=0.608  Sum_probs=17.4

Q ss_pred             CCceEEEecCCCCcchHH
Q psy16868         25 KRHNVVVGRNGSGKSNFF   42 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll   42 (109)
                      +++++|+|+||||||||+
T Consensus        21 Ge~~~l~G~sGsGKSTL~   38 (226)
T cd03270          21 NKLVVITGVSGSGKSSLA   38 (226)
T ss_pred             CcEEEEEcCCCCCHHHHH
Confidence            899999999999999996

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.49  E-value=8.1e-08  Score=63.85  Aligned_cols=31  Identities=19%  Similarity=0.287  Sum_probs=27.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTS   55 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~   55 (109)
                      +.+++|.|+||||||||+++|+.++.+..+.
T Consensus        33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~   63 (229)
T PRK09270         33 RTIVGIAGPPGAGKSTLAEFLEALLQQDGEL   63 (229)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence            4689999999999999999999999877665

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.48  E-value=1.3e-07  Score=68.22  Aligned_cols=31  Identities=26%  Similarity=0.343  Sum_probs=29.3

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTS   55 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~   55 (109)
                      +++++++||||-||||+++.|+|.+.|..|.
T Consensus       367 gEvigilGpNgiGKTTFvk~LAG~ikPdeg~  397 (591)
T COG1245         367 GEVIGILGPNGIGKTTFVKLLAGVIKPDEGS  397 (591)
T ss_pred             ceEEEEECCCCcchHHHHHHHhccccCCCCC
Confidence            7899999999999999999999999998774

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.48  E-value=9.7e-08  Score=60.98  Aligned_cols=27  Identities=30%  Similarity=0.354  Sum_probs=23.7

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      +.+++|+||||||||||+++|+..+.+
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~~   27 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLAG   27 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence            357899999999999999999998754

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.47  E-value=1.9e-07  Score=67.44  Aligned_cols=62  Identities=11%  Similarity=0.152  Sum_probs=42.1

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccch----hhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDS----RQALLHEGTGPRVVNAYVEIVFDNTD   87 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~fq~~~   87 (109)
                      |+.++|+|++|+|||||+.+|+++..+..+.+...+.    ...+...... ...+..|.++||..+
T Consensus       165 Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~-~~r~rtI~vV~qsd~  230 (450)
T PRK06002        165 GQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLA-DNLKKAVAVVATSDE  230 (450)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHH-HhhCCeEEEEEcCCC
Confidence            8899999999999999999999998887776543221    1111111111 113467999999764

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.42  E-value=1.7e-07  Score=64.51  Aligned_cols=26  Identities=27%  Similarity=0.177  Sum_probs=24.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +-+++|.|+|||||||++++|.+++.
T Consensus        62 p~IIGIaG~~GSGKSTlar~L~~ll~   87 (290)
T TIGR00554        62 PYIISIAGSVAVGKSTTARILQALLS   87 (290)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            46899999999999999999999986

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>KOG0060|consensus

Probab=98.40  E-value=3.4e-07  Score=67.54  Aligned_cols=33  Identities=15%  Similarity=0.321  Sum_probs=29.7

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      +....|+||||||||+|+++++++-+...|.+.
T Consensus       461 g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~  493 (659)
T KOG0060|consen  461 GQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLT  493 (659)
T ss_pred             CCeEEEECCCCCchhHHHHHHhcccccCCCeEE
Confidence            778889999999999999999999887888765

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.40  E-value=1.7e-07  Score=62.11  Aligned_cols=25  Identities=28%  Similarity=0.194  Sum_probs=22.6

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      +++|.|+||||||||++.|..++..
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~   25 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSR   25 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence            4789999999999999999999853

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>KOG0065|consensus

Probab=98.40  E-value=8e-08  Score=76.00  Aligned_cols=66  Identities=11%  Similarity=0.098  Sum_probs=43.6

Q ss_pred             CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhcc--CcccccccchhhhhhhcCCCCceeeEEEEEEEecCCCC
Q psy16868         17 QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSD--ESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTDHR   89 (109)
Q Consensus        17 ~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~~~   89 (109)
                      +++|.+++     |-+|+|+|+|||||||||++|++=...  -.|.+.++|.       ........+.++++-|++.+.
T Consensus       804 ~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~-------p~~q~tF~R~~GYvqQ~DiH~  876 (1391)
T KOG0065|consen  804 RQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGF-------PKDQETFARVSGYVEQQDIHS  876 (1391)
T ss_pred             eEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCe-------eCchhhhccccceeecccccC
Confidence            45566666     569999999999999999999876421  1233332221       111133467789999987665

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=98.40  E-value=1.6e-07  Score=61.23  Aligned_cols=21  Identities=29%  Similarity=0.392  Sum_probs=19.8

Q ss_pred             CceEEEecCCCCcchHHHHHH
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQ   46 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~   46 (109)
                      +.++|+||||+|||||+++|.
T Consensus        29 ~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          29 RVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             eEEEEECCCCCChHHHHHHHH
Confidence            379999999999999999998

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.38  E-value=1.9e-07  Score=59.59  Aligned_cols=26  Identities=27%  Similarity=0.197  Sum_probs=23.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +.+++|+||||||||||++.|+....
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCc
Confidence            46789999999999999999998653

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.37  E-value=2.5e-07  Score=63.19  Aligned_cols=29  Identities=24%  Similarity=0.387  Sum_probs=25.2

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhccCccc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLSDESTS   55 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~~~~~~   55 (109)
                      +++|+|+||||||||+++|++++.+..+.
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~   29 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVT   29 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceE
Confidence            47899999999999999999998765543

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PF04310 MukB: MukB N-terminal; InterPro: IPR007406 This is the N-terminal region of MukB

Probab=98.37  E-value=1.6e-07  Score=61.13  Aligned_cols=54  Identities=22%  Similarity=0.339  Sum_probs=39.5

Q ss_pred             eeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868          2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus         2 ~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      ++..+.+-||..|-.+. + +++.-++.|.|.||+||||+|-|....+-|....+.
T Consensus         6 k~~SLtlVNwNG~fart-f-dLd~lvTtL~G~NGAGKsT~m~Af~taLIPD~~~l~   59 (227)
T PF04310_consen    6 KFRSLTLVNWNGFFART-F-DLDELVTTLSGGNGAGKSTTMAAFITALIPDQTLLH   59 (227)
T ss_dssp             EEEEEEEECETTECEEE-E-EHHCCCCCCCCSTTCCHHHHHHHHHHHHS--TTT--
T ss_pred             ccceEEEEeecCeeeeE-e-ehhhheEeeecCCCCcchhhHHHHHHHhcccceEEe
Confidence            45678888885554444 4 666778999999999999999999888877655444

MukB is involved in the segregation and condensation of prokaryotic chromosomes. MukE (IPR007385 from INTERPRO) along with MukF (IPR005582 from INTERPRO) interact with MukB in vivo forming a complex, which is required for chromosome condensation and segregation in Escherichia coli []. The Muk complex appears to be similar to the SMC-ScpA-ScpB complex in other prokaryotes where MukB is the homologue of SMC []. ScpA (IPR003768 from INTERPRO) and ScpB (IPR005234 from INTERPRO) have little sequence similarity to MukE or MukF, though they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. The structure of the N-terminal domain consists of an antiparallel six-stranded beta sheet surrounded by one helix on one side and by five helices on the other side []. It contains an exposed Walker A loop in an unexpected helix-loop-helix motif. In other proteins, Walker A motifs generally adopt a P loop conformation as part of a strand-loop-helix motif embedded in a conserved topology of alternating helices and (parallel) beta strands [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0007059 chromosome segregation, 0030261 chromosome condensation, 0009295 nucleoid; PDB: 1QHL_A 3EUK_H 3EUJ_A.

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.37  E-value=1.8e-07  Score=61.83  Aligned_cols=68  Identities=26%  Similarity=0.288  Sum_probs=44.2

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccC----cccccccchhhhhhh--cCCCCceeeEEEEEEEecCCCCCceeE
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDE----STSLRHSDSRQALLH--EGTGPRVVNAYVEIVFDNTDHRVPGFI   94 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~fq~~~~~~~~~~   94 (109)
                      |++-+++|++|||||-+.++|+++....    ..++++.+  .+++.  ..+..+.....|.|+||+|..-+.++.
T Consensus        33 GEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~--idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~  106 (330)
T COG4170          33 GEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDD--IDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSE  106 (330)
T ss_pred             ceeeeeeccCCCchhHHHHHHhcccccceEEEhhhccccc--chhhcCChHHhhhhhccchhhhhcCchhhcChHH
Confidence            8999999999999999999999998643    22333222  11111  111122334568999999876555443

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.36  E-value=2.6e-07  Score=59.95  Aligned_cols=23  Identities=30%  Similarity=0.242  Sum_probs=21.6

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +++|+|++|||||||.++|..++
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999987

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.33  E-value=3.4e-07  Score=59.59  Aligned_cols=26  Identities=27%  Similarity=0.206  Sum_probs=23.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +.+++|+||+|||||||+++|+..+.
T Consensus         5 g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          5 GLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            67899999999999999999999874

>KOG0054|consensus

Probab=98.33  E-value=9e-07  Score=70.91  Aligned_cols=53  Identities=26%  Similarity=0.276  Sum_probs=41.1

Q ss_pred             EEEEece-eecCC---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868          5 QVIIHGF-KSYKE---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus         5 ~i~i~n~-~~~~~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      .++++|. .++.+   ...+++++     |++++|+|+-||||||||.||.|-+...+|.+.
T Consensus       518 ~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~  579 (1381)
T KOG0054|consen  518 AIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVA  579 (1381)
T ss_pred             eEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEE
Confidence            4566665 45543   11355555     899999999999999999999999998888866

>KOG0066|consensus

Probab=98.30  E-value=4.5e-07  Score=65.63  Aligned_cols=33  Identities=30%  Similarity=0.393  Sum_probs=30.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      ...++|+||||.||||||..|.|-+.|..|..+
T Consensus       613 dSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~R  645 (807)
T KOG0066|consen  613 DSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELR  645 (807)
T ss_pred             cceeEEECCCCccHHHHHHHHhcCCCCCcchhh
Confidence            467999999999999999999999999988765

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=98.27  E-value=6e-07  Score=58.89  Aligned_cols=25  Identities=32%  Similarity=0.571  Sum_probs=22.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +++++|+||||+||||++++|+++.
T Consensus        29 ~~~~~l~G~n~~GKstll~~i~~~~   53 (204)
T cd03282          29 SRFHIITGPNMSGKSTYLKQIALLA   53 (204)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            5899999999999999999998664

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.25  E-value=5.9e-07  Score=58.80  Aligned_cols=26  Identities=27%  Similarity=0.201  Sum_probs=23.5

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +.+++|.|++|||||||.++|...+.
T Consensus         6 ~~iI~I~G~sGsGKTTl~~~l~~~l~   31 (209)
T PRK05480          6 PIIIGIAGGSGSGKTTVASTIYEELG   31 (209)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45789999999999999999999883

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.25  E-value=7.3e-07  Score=53.39  Aligned_cols=29  Identities=28%  Similarity=0.326  Sum_probs=25.1

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDES   53 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~   53 (109)
                      +..+.|+||+|+||||++++|+..+....
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~   30 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPG   30 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence            35788999999999999999999887653

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=98.24  E-value=6.7e-07  Score=62.00  Aligned_cols=33  Identities=18%  Similarity=0.451  Sum_probs=28.7

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      +..++|+|++|||||||+++|.+.+++..+.+.
T Consensus       144 ~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~  176 (308)
T TIGR02788       144 RKNIIISGGTGSGKTTFLKSLVDEIPKDERIIT  176 (308)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHccCCccccEEE
Confidence            678999999999999999999999887666544

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>COG4938 Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=1.3e-06  Score=59.82  Aligned_cols=46  Identities=28%  Similarity=0.452  Sum_probs=38.0

Q ss_pred             eeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhc
Q psy16868          2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus         2 ~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +|.+++++||+.|.+.. + .+ ..+++++|||.+||||.+.+|...+.
T Consensus         1 mi~sl~l~nfk~y~n~~-i-~l-~~ltVF~G~NssGKSt~iqsl~li~s   46 (374)
T COG4938           1 MILSLSLKNFKPYINGK-I-IL-KPLTVFIGPNSSGKSTTIQSLYLIYS   46 (374)
T ss_pred             CcceeeecCccceecce-E-EE-ecceEEEcCCCCchhHHHHHHHHHHH
Confidence            36789999999996654 3 44 48899999999999999999987765

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.23  E-value=9e-07  Score=57.71  Aligned_cols=27  Identities=30%  Similarity=0.342  Sum_probs=23.5

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhccC
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSDE   52 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~~   52 (109)
                      ++++|+||+||||||++.+|...+.+.
T Consensus         2 GlilI~GptGSGKTTll~~ll~~~~~~   28 (198)
T cd01131           2 GLVLVTGPTGSGKSTTLAAMIDYINKN   28 (198)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            578999999999999999988877643

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=98.22  E-value=7.7e-07  Score=58.71  Aligned_cols=22  Identities=32%  Similarity=0.490  Sum_probs=20.3

Q ss_pred             CceEEEecCCCCcchHHHHHHH
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~   47 (109)
                      ...+|+||||+||||+|++|..
T Consensus        30 ~~~~itGpNg~GKStlLk~i~~   51 (213)
T cd03281          30 SIMVITGPNSSGKSVYLKQVAL   51 (213)
T ss_pred             eEEEEECCCCCChHHHHHHHHH
Confidence            6789999999999999999984

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0064|consensus

Probab=98.22  E-value=7.1e-07  Score=65.59  Aligned_cols=32  Identities=28%  Similarity=0.349  Sum_probs=26.4

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSL   56 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~   56 (109)
                      |-...|+||||||||+|++.|.|+-+-..|.+
T Consensus       508 G~hLLItGPNGCGKSSLfRILggLWPvy~g~L  539 (728)
T KOG0064|consen  508 GMHLLITGPNGCGKSSLFRILGGLWPVYNGLL  539 (728)
T ss_pred             CceEEEECCCCccHHHHHHHHhccCcccCCee
Confidence            55677889999999999999999877655543

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.22  E-value=7.7e-07  Score=56.35  Aligned_cols=33  Identities=21%  Similarity=0.392  Sum_probs=23.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      +..++|+|++|+|||||+++|.+-..-..+.++
T Consensus        35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is   67 (161)
T PF03193_consen   35 GKTSVLLGQSGVGKSSLINALLPEAKQKTGEIS   67 (161)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHTSS----S---
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhh
Confidence            689999999999999999999887655555544

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.22  E-value=8e-07  Score=61.93  Aligned_cols=33  Identities=21%  Similarity=0.219  Sum_probs=28.7

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      +.+++|+||||+||||++..|++.+.+..+.+.
T Consensus       114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~  146 (318)
T PRK10416        114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVL  146 (318)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEE
Confidence            678999999999999999999999886655555

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=98.22  E-value=8.3e-07  Score=58.68  Aligned_cols=25  Identities=20%  Similarity=0.454  Sum_probs=22.2

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++++|+||||+||||+|++|+++.
T Consensus        30 ~~~~~l~Gpn~sGKstllr~i~~~~   54 (216)
T cd03284          30 RQILLITGPNMAGKSTYLRQVALIA   54 (216)
T ss_pred             ceEEEEECCCCCChHHHHHHHHHHH
Confidence            4789999999999999999998654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PLN02796 D-glycerate 3-kinase

Probab=98.20  E-value=9.3e-07  Score=62.05  Aligned_cols=26  Identities=19%  Similarity=0.450  Sum_probs=23.6

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhccC
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLSDE   52 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~~~   52 (109)
                      +++|+|++|||||||+++|.+++.+.
T Consensus       102 iIGI~G~sGSGKSTLa~~L~~lL~~~  127 (347)
T PLN02796        102 VIGISAPQGCGKTTLVFALVYLFNAT  127 (347)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhccc
Confidence            48999999999999999999999753

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=98.18  E-value=1.1e-06  Score=62.15  Aligned_cols=26  Identities=35%  Similarity=0.424  Sum_probs=24.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +++++|+||+||||||++.+|...+.
T Consensus       134 ~glilI~GpTGSGKTTtL~aLl~~i~  159 (358)
T TIGR02524       134 EGIVFITGATGSGKSTLLAAIIRELA  159 (358)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            58899999999999999999998874

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>COG4717 Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=1.7e-06  Score=66.07  Aligned_cols=48  Identities=31%  Similarity=0.542  Sum_probs=42.0

Q ss_pred             CeeeEEEEeceeecCCCeeEecCC-CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFD-KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~-~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      |+|.+|+|-+|..|.+.+ + +|. .++.+|.|+|-+|||||+-.|.-+++
T Consensus         1 MrI~sl~I~gYGKFs~r~-~-df~~s~f~vI~G~NEAGKSTl~sFI~smlF   49 (984)
T COG4717           1 MRIQSLEIVGYGKFSERH-F-DFGESKFQVIYGENEAGKSTLFSFIHSMLF   49 (984)
T ss_pred             CceeEEEeeeccchhhhh-h-hccCCceEEEecCccccHHHHHHHHHHHHc
Confidence            899999999998888877 6 555 45999999999999999999888776

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=98.17  E-value=1.3e-06  Score=53.79  Aligned_cols=26  Identities=23%  Similarity=0.289  Sum_probs=22.3

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhccC
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLSDE   52 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~~~   52 (109)
                      +++|+||+|||||||++.|+..+.+.
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~~~   26 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFDPN   26 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence            46899999999999999999876543

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=98.16  E-value=7.2e-07  Score=57.09  Aligned_cols=21  Identities=33%  Similarity=0.371  Sum_probs=19.7

Q ss_pred             CceEEEecCCCCcchHHHHHH
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQ   46 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~   46 (109)
                      .+++|+|++||||||+++.|+
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIV   24 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            578999999999999999998

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.15  E-value=1.3e-06  Score=60.04  Aligned_cols=33  Identities=27%  Similarity=0.389  Sum_probs=29.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      +..++++|+||+|||||+++|.+......|.+.
T Consensus       161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~  193 (287)
T cd01854         161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEIS  193 (287)
T ss_pred             cceEEEECCCCCCHHHHHHHHhchhhcccccee
Confidence            678999999999999999999999887777664

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd04155 Arl3 Arl3 subfamily

Probab=98.15  E-value=1.4e-06  Score=54.93  Aligned_cols=23  Identities=13%  Similarity=0.304  Sum_probs=21.0

Q ss_pred             CceEEEecCCCCcchHHHHHHHh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~   48 (109)
                      -.++|+|++|+|||||+++|.+.
T Consensus        15 ~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          15 PRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             cEEEEEccCCCCHHHHHHHHhcC
Confidence            35899999999999999999986

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.15  E-value=1.3e-06  Score=60.33  Aligned_cols=34  Identities=24%  Similarity=0.354  Sum_probs=29.7

Q ss_pred             CCCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868         24 DKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus        24 ~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      .+..++|+|+||+|||||+++|.+......|.+.
T Consensus       163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~  196 (298)
T PRK00098        163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEIS  196 (298)
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcCCCCccee
Confidence            3778999999999999999999988877777765

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.15  E-value=1.5e-06  Score=51.97  Aligned_cols=23  Identities=30%  Similarity=0.343  Sum_probs=20.5

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +++|.|++||||||+.+.|+--+
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~   23 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERL   23 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            36899999999999999998765

...

>PRK08149 ATP synthase SpaL; Validated

Probab=98.14  E-value=2.3e-06  Score=61.70  Aligned_cols=29  Identities=10%  Similarity=0.139  Sum_probs=25.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDES   53 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~   53 (109)
                      |+.++|+|+||+|||||+++|++...+..
T Consensus       151 Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv  179 (428)
T PRK08149        151 GQRMGIFASAGCGKTSLMNMLIEHSEADV  179 (428)
T ss_pred             CCEEEEECCCCCChhHHHHHHhcCCCCCe
Confidence            89999999999999999999998776553

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.13  E-value=2.7e-06  Score=61.60  Aligned_cols=61  Identities=16%  Similarity=0.213  Sum_probs=41.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhh----hhhhcCCCCceeeEEEEEEEec
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQ----ALLHEGTGPRVVNAYVEIVFDN   85 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~fq~   85 (109)
                      ++.++|+|+||+|||||+++|++...+..+.+...+...    ++.............|.++.+.
T Consensus       158 Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~  222 (438)
T PRK07721        158 GQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS  222 (438)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC
Confidence            789999999999999999999999988877665433211    1222212222235567777644

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=98.12  E-value=3.3e-06  Score=61.21  Aligned_cols=65  Identities=9%  Similarity=0.066  Sum_probs=41.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCc---ccccccch-hhhhhhcCCCCceeeEEEEEEEecCCCCCc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDES---TSLRHSDS-RQALLHEGTGPRVVNAYVEIVFDNTDHRVP   91 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~fq~~~~~~~   91 (109)
                      ++.++|+|+||+|||||+++|++...+..   +.+-..+. ..+++....  ........++|++..++-+
T Consensus       175 Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~--~~~~~~~tvVv~~~ad~~~  243 (455)
T PRK07960        175 GQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENIL--GAEGRARSVVIAAPADVSP  243 (455)
T ss_pred             CcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhc--CcCCCceEEEEEECCCCCH
Confidence            78999999999999999999999887663   33322221 111111111  1223567888888766543

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.11  E-value=1.8e-06  Score=56.11  Aligned_cols=27  Identities=37%  Similarity=0.492  Sum_probs=22.8

Q ss_pred             eEEEecCCCCcchHHHHHHHhhccCcc
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVLSDEST   54 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l~~~~~   54 (109)
                      ++|+|++|+|||||+++|.+...+..+
T Consensus         4 I~i~G~~g~GKSSLin~L~g~~~~~~~   30 (197)
T cd04104           4 IAVTGESGAGKSSFINALRGVGHEEEG   30 (197)
T ss_pred             EEEECCCCCCHHHHHHHHhccCCCCCC
Confidence            689999999999999999987654433

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK01889 GTPase RsgA; Reviewed

Probab=98.11  E-value=3e-06  Score=59.92  Aligned_cols=34  Identities=21%  Similarity=0.300  Sum_probs=31.1

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRH   58 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~   58 (109)
                      ++.++|+|+||+|||||+++|.+...+..|.+..
T Consensus       195 g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~  228 (356)
T PRK01889        195 GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVRE  228 (356)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHhcccceeeEEE
Confidence            5789999999999999999999999988888763

>cd04159 Arl10_like Arl10-like subfamily

Probab=98.11  E-value=1.5e-06  Score=53.37  Aligned_cols=21  Identities=29%  Similarity=0.260  Sum_probs=19.5

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++|+|++|+|||||+++|.+.
T Consensus         2 i~i~G~~~~GKssl~~~l~~~   22 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGG   22 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccC
Confidence            589999999999999999886

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.09  E-value=2.1e-06  Score=61.86  Aligned_cols=24  Identities=17%  Similarity=0.200  Sum_probs=22.2

Q ss_pred             CCceEEEecCCCCcchHHHHHHHh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~   48 (109)
                      +++++|+||||+||||++..|++.
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~~  214 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAAR  214 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999999875

>TIGR00101 ureG urease accessory protein UreG

Probab=98.09  E-value=2.6e-06  Score=55.69  Aligned_cols=26  Identities=31%  Similarity=0.365  Sum_probs=23.0

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhccC
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLSDE   52 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~~~   52 (109)
                      .++|+|++|||||||++.+...+.+.
T Consensus         3 ~i~i~G~~GsGKTTll~~l~~~l~~~   28 (199)
T TIGR00101         3 KIGVAGPVGSGKTALIEALTRALRQK   28 (199)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCcC
Confidence            57899999999999999999887654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=98.09  E-value=2.3e-06  Score=56.90  Aligned_cols=31  Identities=19%  Similarity=0.342  Sum_probs=25.4

Q ss_pred             CCceEEEecCCCCcchHHHHHHH-hhccCccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQF-VLSDESTS   55 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~-~l~~~~~~   55 (109)
                      +++++|+||||+||||++++|++ .+.+..|.
T Consensus        31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~   62 (222)
T cd03287          31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGS   62 (222)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCC
Confidence            67899999999999999999999 33344443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=98.08  E-value=2.6e-06  Score=54.97  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=19.2

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      +.+|+||||+||||+++.++..
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~~   22 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGLI   22 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHHH
Confidence            3579999999999999999843

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.06  E-value=2e-06  Score=63.24  Aligned_cols=33  Identities=24%  Similarity=0.303  Sum_probs=29.3

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      ++.++|+|+||+|||||++.|.+++++..+...
T Consensus       210 G~~llliG~~GsGKTtLak~L~gllpp~~g~e~  242 (506)
T PRK09862        210 GHNLLLIGPPGTGKTMLASRINGLLPDLSNEEA  242 (506)
T ss_pred             CcEEEEECCCCCcHHHHHHHHhccCCCCCCcEE
Confidence            678999999999999999999999998776543

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.06  E-value=2.4e-06  Score=62.44  Aligned_cols=28  Identities=14%  Similarity=0.074  Sum_probs=24.7

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDE   52 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~   52 (109)
                      +.+++|+||||+||||++..|++.+...
T Consensus       256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~  283 (484)
T PRK06995        256 GGVFALMGPTGVGKTTTTAKLAARCVMR  283 (484)
T ss_pred             CcEEEEECCCCccHHHHHHHHHHHHHHh
Confidence            6799999999999999999999877543

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=98.05  E-value=2.7e-06  Score=61.19  Aligned_cols=27  Identities=19%  Similarity=0.353  Sum_probs=23.9

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhccC
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSDE   52 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~~   52 (109)
                      -+++|.|++|||||||+++|.+++.+.
T Consensus       213 lIIGIsG~qGSGKSTLa~~L~~lL~~~  239 (460)
T PLN03046        213 LVIGFSAPQGCGKTTLVFALDYLFRVT  239 (460)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            467899999999999999999988654

>smart00053 DYNc Dynamin, GTPase

Probab=98.04  E-value=3.3e-06  Score=56.70  Aligned_cols=26  Identities=27%  Similarity=0.180  Sum_probs=22.8

Q ss_pred             CCCceEEEecCCCCcchHHHHHHHhh
Q psy16868         24 DKRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        24 ~~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +-..++++|++|+||||++++|++..
T Consensus        25 ~~p~i~vvG~~~~GKSt~l~~i~g~~   50 (240)
T smart00053       25 DLPQIAVVGGQSAGKSSVLENFVGRD   50 (240)
T ss_pred             CCCeEEEEcCCCccHHHHHHHHhCCC
Confidence            34578999999999999999999973

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG0066|consensus

Probab=98.04  E-value=4.1e-06  Score=60.82  Aligned_cols=43  Identities=26%  Similarity=0.330  Sum_probs=32.1

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHH
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~   47 (109)
                      .|++.|| .+-....++.+-+     |...+|+||||-||||||+.|+.
T Consensus       264 DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~  312 (807)
T KOG0066|consen  264 DIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAA  312 (807)
T ss_pred             cceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHh
Confidence            4778888 5554444333333     78899999999999999999864

>PRK14738 gmk guanylate kinase; Provisional

Probab=98.04  E-value=3e-06  Score=55.58  Aligned_cols=24  Identities=21%  Similarity=0.253  Sum_probs=21.3

Q ss_pred             CCceEEEecCCCCcchHHHHHHHh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~   48 (109)
                      +.+++|+||+|||||||+++|.-.
T Consensus        13 ~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         13 PLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CeEEEEECcCCCCHHHHHHHHHhc
Confidence            678899999999999999999643

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.04  E-value=4.4e-06  Score=56.77  Aligned_cols=21  Identities=33%  Similarity=0.400  Sum_probs=19.4

Q ss_pred             CCceEEEecCCCCcchHHHHH
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAI   45 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al   45 (109)
                      +.+++|+|.+|||||||++.+
T Consensus        21 g~~~~vtGvSGsGKStL~~~~   41 (261)
T cd03271          21 GVLTCVTGVSGSGKSSLINDT   41 (261)
T ss_pred             CcEEEEECCCCCchHHHHHHH
Confidence            799999999999999999755

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.02  E-value=2.9e-06  Score=52.56  Aligned_cols=19  Identities=32%  Similarity=0.476  Sum_probs=18.1

Q ss_pred             eEEEecCCCCcchHHHHHH
Q psy16868         28 NVVVGRNGSGKSNFFFAIQ   46 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~   46 (109)
                      ++|+|++|+|||||++.|.
T Consensus         2 i~l~G~~g~GKTtL~~~l~   20 (170)
T cd01876           2 IAFAGRSNVGKSSLINALT   20 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHh
Confidence            5899999999999999998

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=98.02  E-value=3.3e-06  Score=54.12  Aligned_cols=26  Identities=15%  Similarity=0.239  Sum_probs=23.6

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      .+++|+|++|||||||++.|...+.+
T Consensus         7 ~ii~ivG~sgsGKTTLi~~li~~l~~   32 (173)
T PRK10751          7 PLLAIAAWSGTGKTTLLKKLIPALCA   32 (173)
T ss_pred             eEEEEECCCCChHHHHHHHHHHHHhh
Confidence            57899999999999999999988875

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.01  E-value=3.7e-06  Score=54.73  Aligned_cols=27  Identities=30%  Similarity=0.226  Sum_probs=24.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      +.+++|+|++|||||||.++|...+.+
T Consensus        24 ~~~i~i~G~~GsGKSTla~~l~~~l~~   50 (198)
T PRK03846         24 GVVLWFTGLSGSGKSTVAGALEEALHE   50 (198)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            678999999999999999999998754

>PRK07261 topology modulation protein; Provisional

Probab=98.01  E-value=4.4e-06  Score=53.29  Aligned_cols=24  Identities=25%  Similarity=0.369  Sum_probs=20.7

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .++|+|++|||||||.+.|+..+.
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~   25 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYN   25 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC
Confidence            368999999999999999986653

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.01  E-value=4.5e-06  Score=51.66  Aligned_cols=30  Identities=20%  Similarity=0.419  Sum_probs=24.3

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhccCcccc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLSDESTSL   56 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~~~~~~~   56 (109)
                      +++|.|++|+||||++..++.......+.+
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v   30 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKV   30 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEE
Confidence            468999999999999999988876544433

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.01  E-value=5.6e-06  Score=60.06  Aligned_cols=33  Identities=21%  Similarity=0.186  Sum_probs=30.5

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      |.+++|+|+||.||||.++.|+|-+.|..|...
T Consensus       100 G~V~GilG~NGiGKsTalkILaGel~PNLG~~~  132 (591)
T COG1245         100 GKVVGILGPNGIGKSTALKILAGELKPNLGRYE  132 (591)
T ss_pred             CcEEEEEcCCCccHHHHHHHHhCccccCCCCCC
Confidence            789999999999999999999999999888654

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=98.01  E-value=3.8e-06  Score=49.94  Aligned_cols=21  Identities=29%  Similarity=0.392  Sum_probs=19.2

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++|+|+.|+|||||+++|.+.
T Consensus         2 V~iiG~~~~GKSTlin~l~~~   22 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTGK   22 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            689999999999999999963

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.99  E-value=1.3e-05  Score=53.42  Aligned_cols=28  Identities=18%  Similarity=0.101  Sum_probs=23.7

Q ss_pred             CCceEEEecCCCCcchH-HHHHHHhhccC
Q psy16868         25 KRHNVVVGRNGSGKSNF-FFAIQFVLSDE   52 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStl-l~al~~~l~~~   52 (109)
                      +.+++|+|+|||||||| ++.+++++.+.
T Consensus        24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g   52 (230)
T PRK08533         24 GSLILIEGDESTGKSILSQRLAYGFLQNG   52 (230)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence            68999999999999999 68888776543

>PRK07429 phosphoribulokinase; Provisional

Probab=97.99  E-value=4.4e-06  Score=58.49  Aligned_cols=27  Identities=30%  Similarity=0.443  Sum_probs=24.3

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhccCc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLSDES   53 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~~~~   53 (109)
                      +++|.|++||||||+++.|+.++.+..
T Consensus        10 IIgI~G~SGSGKSTla~~L~~ll~~~~   36 (327)
T PRK07429         10 LLGVAGDSGCGKTTFLRGLADLLGEEL   36 (327)
T ss_pred             EEEEECCCCCCHHHHHHHHHhHhccCc
Confidence            688999999999999999999987654

>PLN02318 phosphoribulokinase/uridine kinase

Probab=97.99  E-value=3.9e-06  Score=62.70  Aligned_cols=31  Identities=19%  Similarity=0.216  Sum_probs=25.2

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      -+++|.||||||||||+++|.+.+. ..+.+.
T Consensus        66 iIIGIaGpSGSGKTTLAk~LaglLp-~vgvIs   96 (656)
T PLN02318         66 ILVGVAGPSGAGKTVFTEKVLNFMP-SIAVIS   96 (656)
T ss_pred             EEEEEECCCCCcHHHHHHHHHhhCC-CcEEEE
Confidence            3788999999999999999999873 344444

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.99  E-value=5e-06  Score=50.91  Aligned_cols=24  Identities=29%  Similarity=0.332  Sum_probs=20.5

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ++.++|++||||||+.+.|...+.
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~   24 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLG   24 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHST
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCC
Confidence            467899999999999999986554

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	109
1xew_X	182	Structural Biochemistry Of Atp-Driven Dimerization		4e-10
3kta_A	182	Structural Basis For Adenylate Kinase Activity In A		5e-10
4i99_A	354	Crystal Structure Of The Smchead Bound To The C-win		7e-10
3zgx_A	426	Crystal Structure Of The Kleisin-n Smc Interface In		3e-08
1e69_A	322	Smc Head Domain From Thermotoga Maritima Length = 3		6e-08
1w1w_A	430	Sc Smc1hd:scc1-c Complex, Atpgs Length = 430		6e-04

>pdb|1XEW|X Chain X, Structural Biochemistry Of Atp-Driven Dimerization And Dna Stimulated Activation Of Smc Atpases. Length = 182

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 2  YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDS 61
          YI+++ + GFKSY  + VV PF K    +VG NGSGKSN   AI FVL   S     +  
Sbjct: 3  YIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASR 62
Query: 62 RQALLHEGTG--PRVVNAYVEIVFDNTDHRVP 91
             L+  G+   P    A V I F+N D   P
Sbjct: 63 ISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFP 94

>pdb|3KTA|A Chain A, Structural Basis For Adenylate Kinase Activity In Abc Atpases Length = 182

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 2  YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDS 61
          YI+++ + GFKSY  + VV PF K    +VG NGSGKSN   AI FVL   S     +  
Sbjct: 3  YIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAXRASR 62
Query: 62 RQALLHEGTG--PRVVNAYVEIVFDNTDHRVP 91
             L+  G+   P    A V I F+N D   P
Sbjct: 63 ISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFP 94

>pdb|4I99|A Chain A, Crystal Structure Of The Smchead Bound To The C-winged Helix Domain Of Scpa Length = 354

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/92 (40%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 2  YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDS 61
          YI+++ + GFKSY  + VV PF K    +VG NGSGKSN   AI FVL   S     +  
Sbjct: 3  YIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAXRASR 62
Query: 62 RQALLHEGTG--PRVVNAYVEIVFDNTDHRVP 91
             L+  G+   P    A V I F+N D   P
Sbjct: 63 ISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFP 94

>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In Prokaryotic Condensin Length = 426

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 1   MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDEST-SLRHS 59
           M++K++ + GFKS+ E+  V+ F K    VVG NGSGKSN   AI++VL ++S  SLR  
Sbjct: 1   MFLKRLDVIGFKSFAERISVD-FVKGVTAVVGPNGSGKSNITDAIRWVLGEQSARSLRGG 59
Query: 60  DSRQALLHEGTGPRVVN-AYVEIVFDNTDHRVPGFIRCRSTSVDLYR 105
                +       + +N A V +  DN DH +P      S +  +YR
Sbjct: 60  KMEDIIFAGSDSRKRLNLAEVTLTLDNDDHFLPIDFHEVSVTRRVYR 106

>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima Length = 322

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          M +K++ + GFKS+   +++  F  R   +VG NGSGKSN   AI++V  ++S     + 
Sbjct: 1  MRLKKLYLKGFKSFGRPSLIG-FSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRAS 59
Query: 61 SRQALLHEGTG--PRVVNAYVEIVFDNTDHRV 90
           +  ++  G+   P   +AYVE+VF+     +
Sbjct: 60 EKFDMIFAGSENLPPAGSAYVELVFEENGEEI 91

>pdb|1W1W|A Chain A, Sc Smc1hd:scc1-c Complex, Atpgs Length = 430

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 8  IHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLH 67
          +  FKSY+  T V   +     ++G NGSGKSN   AI FVL   S  LR S+  + L++
Sbjct: 9  LSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLR-SNILKDLIY 67
Query: 68 EG 69
           G
Sbjct: 68 RG 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	109
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	3e-21
3kta_A	182	Chromosome segregation protein SMC; structural mai	2e-19
1e69_A	322	Chromosome segregation SMC protein; structural mai	1e-17
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	3e-17
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	2e-16
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	8e-16
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	6e-13
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	1e-09
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	6e-08
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	6e-05
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	4e-04

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430

 Score = 85.5 bits (212), Expect = 3e-21
 Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 9/99 (9%)

Query: 2   YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDS 61
            +  + +  FKSY+  T V   +     ++G NGSGKSN   AI FVL   S  LR S+ 
Sbjct: 3   RLVGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLR-SNI 61

Query: 62  RQALLHEGTGPR--------VVNAYVEIVFDNTDHRVPG 92
            + L++ G               A               
Sbjct: 62  LKDLIYRGVLNDENSDDYDNEGAASSNPQSAYVKAFYQK 100

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* Length = 182

 Score = 77.2 bits (191), Expect = 2e-19
 Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 4/95 (4%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDEST-SLRHS 59
           YI+++ + GFKSY  + VV PF K    +VG NGSGKSN   AI FVL   S  ++R +
Sbjct: 2  PYIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMR-A 60

Query: 60 DSRQALLHEGTGPR--VVNAYVEIVFDNTDHRVPG 92
               L+  G+        A V I F+N D   P 
Sbjct: 61 SRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPI 95

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 Length = 322

 Score = 74.6 bits (184), Expect = 1e-17
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 5/93 (5%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDEST-SLRHS 59
          M +K++ + GFKS+   +++  F  R   +VG NGSGKSN   AI++V  ++S   LR +
Sbjct: 1  MRLKKLYLKGFKSFGRPSLIG-FSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELR-A 58

Query: 60 DSRQALLHEGTGPR--VVNAYVEIVFDNTDHRV 90
            +  ++  G+       +AYVE+VF+     +
Sbjct: 59 SEKFDMIFAGSENLPPAGSAYVELVFEENGEEI 91

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 74.5 bits (183), Expect = 3e-17
 Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 12/107 (11%)

Query: 1   MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
           M +K++ ++ FKS+    +   F+K    ++G NGSGKS+ F A+ F L    ++  +  
Sbjct: 3   MILKEIRMNNFKSHVNSRI--KFEKGIVAIIGENGSGKSSIFEAVFFALFGAGSNFNYDT 60

Query: 61  SRQALLHEGTGPRVVNAYVEIVF--DNTDHRVPGFIRCRSTSVDLYR 105
               ++ +G      + YVE+ F  +  ++++            LY+
Sbjct: 61  ----IITKGKK----SVYVELDFEVNGNNYKIIREYDSGRGGAKLYK 99

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* Length = 203

 Score = 70.0 bits (172), Expect = 2e-16
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 8/89 (8%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          M +++V +  F+S+ +  V   F +  N+++G+NGSGKS+   AI   L           
Sbjct: 1  MKLERVTVKNFRSHSDTVV--EFKEGINLIIGQNGSGKSSLLDAILVGLYWPLR--IKDI 56

Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHR 89
           +      G      + Y++++F+    +
Sbjct: 57 KKDEFTKVGAR----DTYIDLIFEKDGTK 81

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* Length = 149

 Score = 67.4 bits (165), Expect = 8e-16
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 8/89 (8%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          M +++V +  F+S+ +  V   F +  N+++G+NGSGKS+   AI   L           
Sbjct: 1  MKLERVTVKNFRSHSDTVV--EFKEGINLIIGQNGSGKSSLLDAILVGLYWPLR--IKDI 56

Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHR 89
           +      G      + Y++++F+    +
Sbjct: 57 KKDEFTKVGAR----DTYIDLIFEKDGTK 81

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 62.4 bits (151), Expect = 6e-13
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          M +++V +  F+S+ +  V   F +  N+++G+NGSGKS+   AI   L           
Sbjct: 1  MKLERVTVKNFRSHSDTVV--EFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKK 58

Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHR 89
                  G      + Y++++F+    +
Sbjct: 59 DE--FTKVGAR----DTYIDLIFEKDGTK 81

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} Length = 359

 Score = 52.6 bits (127), Expect = 1e-09
 Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 10/91 (10%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          + +  +    +++    T+   F +    + G NG+GK+N   A    L   +       
Sbjct: 4  VRLSALSTLNYRNLAPGTL--NFPEGVTGIYGENGAGKTNLLEAAYLAL---TGQTDAPR 58

Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHRVP 91
            Q +    T      AYV            
Sbjct: 59 IEQLIQAGETE-----AYVRADLQQGGSLSI 84

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Length = 365

 Score = 47.9 bits (114), Expect = 6e-08
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 7/89 (7%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
          M  +++ +  F   K   +   F     VV G NG+GKS+ F AI F L       R+ +
Sbjct: 1  MRPERLTVRNFLGLKNVDI--EFQSGITVVEGPNGAGKSSLFEAISFALFGNGI--RYPN 56

Query: 61 SRQALLHEGTGPRVVNAYVEIVFDNTDHR 89
          S    ++         A +   F+    R
Sbjct: 57 SYD-YVNRNAVDGT--ARLVFQFERGGKR 82

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 Length = 227

 Score = 39.0 bits (90), Expect = 6e-05
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 13/96 (13%)

Query: 3  IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR----- 57
           + + +  +  +  +T     D+    + G NG+GKS    A    L  + T L      
Sbjct: 7  FRSLTLINWNGFFARTF--DLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT 64

Query: 58 ----HSDSRQALLHEGTGPRVVNAYVEIVFDNTDHR 89
               S SR   LH      V   Y  +   N+ H+
Sbjct: 65 EAGATSGSRDKGLHGKLKAGV--CYSMLDTINSRHQ 98

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* Length = 483

 Score = 37.2 bits (85), Expect = 4e-04
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 11/89 (12%)

Query: 3  IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR----- 57
           + + +  +  +  +T    FD+    + G NG+GKS         L  + T L      
Sbjct: 9  FRSLTLINWNGFFARTF--DFDELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTT 66

Query: 58 ----HSDSRQALLHEGTGPRVVNAYVEIV 82
               S SR   L+      V  A +E V
Sbjct: 67 EAGSTSSSRDKGLYGKLKAGVCYAVLETV 95

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	109
3kta_A	182	Chromosome segregation protein SMC; structural mai	99.81
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	99.75
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.73
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	99.73
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.7
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.69
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.69
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.68
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.68
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.68
1g6h_A	257	High-affinity branched-chain amino acid transport	99.67
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.67
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.67
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.67
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.66
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.66
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.66
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.66
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.65
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.65
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.65
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.65
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.64
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.64
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.64
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.64
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.63
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.63
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.62
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.62
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.61
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.61
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.61
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.6
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.6
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.6
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.59
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.59
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.59
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.58
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.58
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.57
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.55
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.52
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	99.51
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.51
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.5
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.5
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.48
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.47
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.47
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.46
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.44
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.43
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.43
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.37
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.35
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.34
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.3
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.29
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.28
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.26
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.23
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.22
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.21
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.17
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.16
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.16
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.14
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.12
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.08
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.07
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.04
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.02
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.0
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.0
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.98
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.97
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.97
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.94
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.93
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.93
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.92
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.91
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.9
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.9
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.89
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.88
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	98.88
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.88
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.88
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.88
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.87
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.87
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.85
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.85
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.84
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.83
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.82
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.81
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.81
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.81
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.8
2og2_A	359	Putative signal recognition particle receptor; nuc	98.8
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.79
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.79
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.79
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.79
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.78
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.78
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.77
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.75
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.73
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.73
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.72
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.7
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.69
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.68
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.67
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.66
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	98.65
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.65
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.65
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.64
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.63
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.62
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.6
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.58
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.58
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.58
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.57
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.57
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.56
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.56
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.55
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.52
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.51
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.49
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.45
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.44
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.44
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.43
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.37
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.37
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.36
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.35
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.35
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.34
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.33
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.33
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.32
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.28
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.25
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.25
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.25
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.25
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	98.24
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.23
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.23
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.23
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	98.2
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.2
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.19
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.19
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.17
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.17
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.17
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.16
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.16
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.15
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.14
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.14
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.13
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	98.12
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.12
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.11
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	98.08
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.07
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.05
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	98.03
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.02
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	98.01
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	98.0
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	98.0
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.99
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.99
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.98
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.94
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.94
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.93
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.92
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	97.92
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.92
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.92
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.9
1via_A	175	Shikimate kinase; structural genomics, transferase	97.9
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.89
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.88
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.87
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.87
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.86
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.85
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.85
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.83
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.83
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.83
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.83
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.82
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.8
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.8
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.79
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.79
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.78
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.77
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.77
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.77
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.76
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.76
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.75
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.75
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.75
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.74
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.74
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.73
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.72
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.71
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.71
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.7
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.7
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.7
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.69
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.69
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.68
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.67
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.66
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.66
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.66
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.65
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.65
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.64
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.64
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.64
3bos_A	242	Putative DNA replication factor; P-loop containing	97.64
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.64
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.63
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.63
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.62
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	97.61
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.6
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.6
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.6
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.59
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.58
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.58
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.58
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.57
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.57
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	97.57
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.57
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.56
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	97.56
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	97.55
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.55
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.55
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.55
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.55
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	97.55
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	97.54
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	97.54
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	97.54
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.54
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.53
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	97.53
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	97.53
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	97.53
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.53
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	97.52
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	97.52
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	97.52
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.52
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	97.51
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.51
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	97.5
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.5
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.5
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	97.49
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.49
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.49
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.48
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	97.48
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	97.48
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	97.48
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	97.48
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	97.48
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	97.48
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	97.48
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	97.48
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	97.48
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.47
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.47
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.46
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	97.46
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	97.46
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.46
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	97.45
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.45
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.45
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	97.44
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	97.44
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	97.44
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	97.44
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	97.44
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	97.43
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	97.43
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.43
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.43
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.42
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.42
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	97.42
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.42
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.42
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	97.41
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	97.41
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.41
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	97.41
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	97.4
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	97.4
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	97.4
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	97.4
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	97.4
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	97.39
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.39
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.39
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	97.39
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	97.38
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	97.38
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	97.38
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	97.38
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.38
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	97.38
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.38
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	97.37
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	97.37
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	97.37
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	97.37
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	97.36
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	97.36
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	97.36
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	97.36
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	97.36
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.35
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	97.35
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.34
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	97.34
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.34
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.34
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.34
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	97.33
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	97.33
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.33
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	97.33
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.32
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.32
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	97.32
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	97.32
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	97.32
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	97.31
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	97.31
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	97.31
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	97.31
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	97.31
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	97.3
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	97.3
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	97.3
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	97.3
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	97.3
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.29
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	97.29
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	97.28
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.27
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	97.27
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	97.26
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	97.26
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	97.26
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	97.26
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	97.25
2fh5_B	214	SR-beta, signal recognition particle receptor beta	97.25
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.25
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.25
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	97.24
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.23
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.23
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	97.23
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	97.23
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	97.22
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.22
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.21
3llu_A	196	RAS-related GTP-binding protein C; structural geno	97.21
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	97.2
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.2
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.2
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.2
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.2
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	97.2
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	97.2
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	97.19
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.18
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.18
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.18
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	97.17
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	97.17
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	97.17
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.17
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	97.17
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	97.17
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.17
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.16
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	97.16
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	97.16
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.16
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.16
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.15
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	97.14
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.13
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	97.13
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	97.13
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.13
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.11
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.11
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.11
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	97.1
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	97.1
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.1
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.1
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	97.1
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	97.09
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	97.09
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	97.09
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	97.09
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.08
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.08
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.08
3ice_A	422	Transcription termination factor RHO; transcriptio	97.08
2qgz_A	308	Helicase loader, putative primosome component; str	97.08
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.08
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.06
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	97.05
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.04
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	97.03
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.03
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.02
2r44_A	331	Uncharacterized protein; putative ATPase, structur	97.01
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.01
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	97.01
3pvs_A	447	Replication-associated recombination protein A; ma	97.0
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.99
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.98
3co5_A	143	Putative two-component system transcriptional RES	96.98
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.97
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.97
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	96.96
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.96
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	96.95
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	96.95
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	96.94
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.94
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	96.93
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.92
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.92
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.89
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.89
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	96.89
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.92
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.86
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	96.85
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	96.85
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.84
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	96.84
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	96.84
1wxq_A	397	GTP-binding protein; structural genomics, riken st	96.83
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	96.83
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	96.81
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	96.81
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.8
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	96.79
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.74
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.74
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	96.73
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.73
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	96.71
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.71
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.69
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.69
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.69
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.69
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	96.67
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.67
2fna_A	357	Conserved hypothetical protein; structural genomic	96.66
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.66
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	96.64

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=99.81  E-value=2.1e-19  Score=113.78  Aligned_cols=89  Identities=39%  Similarity=0.591  Sum_probs=65.8

Q ss_pred             CeeeEEEEeceeecC--CCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCC--Cceee
Q psy16868          1 MYIKQVIIHGFKSYK--EQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTG--PRVVN   76 (109)
Q Consensus         1 M~i~~i~i~n~~~~~--~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~   76 (109)
                      |+|.+|+++||++|.  +.. + +|++++++|+||||||||||++||++++.+..+.........+++..+..  .+...
T Consensus         2 M~i~~l~i~nf~~~~~~~~~-~-~~~~g~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   79 (182)
T 3kta_A            2 PYIEKLELKGFKSYGNKKVV-I-PFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKY   79 (182)
T ss_dssp             CEEEEEEEESBGGGCSSCEE-E-ECCSSEEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSC
T ss_pred             ceEEEEEEeCeEeecCccEE-E-ecCCCcEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCce
Confidence            789999999999994  443 5 78777999999999999999999999998876654323333344444322  11246


Q ss_pred             EEEEEEEecCCCCCc
Q psy16868         77 AYVEIVFDNTDHRVP   91 (109)
Q Consensus        77 ~~i~~~fq~~~~~~~   91 (109)
                      +.|.++||++...++
T Consensus        80 ~~v~~~f~~~~~~~~   94 (182)
T 3kta_A           80 AEVAIYFNNEDRGFP   94 (182)
T ss_dssp             EEEEEEEECTTCCSS
T ss_pred             EEEEEEEeCCCcccc
Confidence            789999999876553

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=99.75  E-value=2.5e-18  Score=106.55  Aligned_cols=89  Identities=24%  Similarity=0.405  Sum_probs=63.8

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      |+|.+|+++||++|.+.. + +|++++++|+||||||||||++||.+++.+.... + .....+++..+.    ....|.
T Consensus         1 M~i~~l~i~nf~~~~~~~-i-~f~~g~~~I~G~NGsGKStil~Ai~~~l~g~~~~-r-~~~~~~~~~~~~----~~~~v~   72 (149)
T 1f2t_A            1 MKLERVTVKNFRSHSDTV-V-EFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRI-K-DIKKDEFTKVGA----RDTYID   72 (149)
T ss_dssp             CEEEEEEEESBTTBSSEE-E-ECCSEEEEEECCTTSSHHHHHHHHHHHHHCSSCC-T-TSSCCCSCSTTC----CCEEEE
T ss_pred             CEEEEEEEeCcccCcceE-E-EcCCCeEEEECCCCCCHHHHHHHHHHHHcCCccc-c-cCCHHHheecCC----CcEEEE
Confidence            999999999999998754 5 7888899999999999999999999988653111 1 111122333332    257888


Q ss_pred             EEEecCCCCCceeEEEe
Q psy16868         81 IVFDNTDHRVPGFIRCR   97 (109)
Q Consensus        81 ~~fq~~~~~~~~~~~~~   97 (109)
                      +.|...+..+.+.++..
T Consensus        73 ~~f~~~~~~~~i~R~~~   89 (149)
T 1f2t_A           73 LIFEKDGTKYRITRRFL   89 (149)
T ss_dssp             EEEEETTEEEEEEEEEC
T ss_pred             EEEEECCEEEEEEEEEc
Confidence            88877665566655543

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.73  E-value=1.8e-17  Score=113.67  Aligned_cols=94  Identities=31%  Similarity=0.573  Sum_probs=62.6

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCC--CceeeEE
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTG--PRVVNAY   78 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~   78 (109)
                      |+|++|+++||++|.+...+ +|++++++|+||||||||||++||.+++....+.-.......+++..+..  .......
T Consensus         1 M~l~~L~i~nfr~~~~~~~l-~~~~g~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~   79 (322)
T 1e69_A            1 MRLKKLYLKGFKSFGRPSLI-GFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAY   79 (322)
T ss_dssp             CEEEEEEEESBTTBCSCEEE-ECCSSEEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEE
T ss_pred             CeEeEEEEeCceeecCCeEE-ecCCCcEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEE
Confidence            89999999999999654436 78777999999999999999999999985433221101222334443331  2224688


Q ss_pred             EEEEEecCCCCCceeEE
Q psy16868         79 VEIVFDNTDHRVPGFIR   95 (109)
Q Consensus        79 i~~~fq~~~~~~~~~~~   95 (109)
                      |.++|+..+..+.+.++
T Consensus        80 v~~~f~~~~~~~~i~r~   96 (322)
T 1e69_A           80 VELVFEENGEEITVARE   96 (322)
T ss_dssp             EEEEEESSSCEEEEEEE
T ss_pred             EEEEEEeCCeEEEEEEE
Confidence            99999887654444433

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=99.73  E-value=1.4e-17  Score=107.78  Aligned_cols=89  Identities=24%  Similarity=0.426  Sum_probs=67.6

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      |+|.+|++.||++|.+.. + +|++++++|+|||||||||+++||.+++.+... .+ .....+++..+..    .+.|.
T Consensus         1 M~i~~l~i~nf~~~~~~~-i-~f~~~~~~I~G~NgsGKStil~ai~~~l~g~~~-~r-~~~~~~~i~~~~~----~~~v~   72 (203)
T 3qks_A            1 MKLERVTVKNFRSHSDTV-V-EFKEGINLIIGQNGSGKSSLLDAILVGLYWPLR-IK-DIKKDEFTKVGAR----DTYID   72 (203)
T ss_dssp             CEEEEEEEESBTTBSSEE-E-ECCSEEEEEECCTTSSHHHHHHHHHHHHHTTSC-CT-TCCHHHHHTSCSS----CEEEE
T ss_pred             CEEEEEEEECCcCccceE-E-EeCCCeEEEEcCCCCCHHHHHHHHHHHhcCCcc-cc-cccchhhhccCCC----cEEEE
Confidence            999999999999998754 6 788899999999999999999999999986422 11 1112345554432    67899


Q ss_pred             EEEecCCCCCceeEEEe
Q psy16868         81 IVFDNTDHRVPGFIRCR   97 (109)
Q Consensus        81 ~~fq~~~~~~~~~~~~~   97 (109)
                      +.|+..+..+.+.++..
T Consensus        73 l~f~~~~~~~~i~R~~~   89 (203)
T 3qks_A           73 LIFEKDGTKYRITRRFL   89 (203)
T ss_dssp             EEEEETTEEEEEEEEEE
T ss_pred             EEEEECCEEEEEEEEEE
Confidence            99998776676666554

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.70  E-value=3.6e-18  Score=118.80  Aligned_cols=80  Identities=15%  Similarity=0.230  Sum_probs=62.1

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      .|+++|+ +.|++..++++++     |++++|+|||||||||||++|+|++.|+.|.+.+.+...  .......+..++.
T Consensus         4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i--~~~~~~~~~~~r~   81 (359)
T 3fvq_A            4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTI--FSKNTNLPVRERR   81 (359)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEE--ESSSCBCCGGGSC
T ss_pred             EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEC--cccccccchhhCC
Confidence            4889999 8898877777666     899999999999999999999999999999998665321  1111122233567


Q ss_pred             EEEEEecC
Q psy16868         79 VEIVFDNT   86 (109)
Q Consensus        79 i~~~fq~~   86 (109)
                      |+++||++
T Consensus        82 ig~vfQ~~   89 (359)
T 3fvq_A           82 LGYLVQEG   89 (359)
T ss_dssp             CEEECTTC
T ss_pred             EEEEeCCC
Confidence            99999986

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.69  E-value=3e-17  Score=113.29  Aligned_cols=88  Identities=24%  Similarity=0.436  Sum_probs=64.8

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      |++.+|+++||++|.+.. + +|++++++|+||||||||||++||++++..... .. .....+++..+.    ..+.|.
T Consensus         1 M~i~~l~l~nF~~~~~~~-i-~f~~~~~~i~G~NGsGKS~lleAi~~~l~~~~~-~~-~~~~~~~~~~~~----~~~~v~   72 (339)
T 3qkt_A            1 MKLERVTVKNFRSHSDTV-V-EFKEGINLIIGQNGSGKSSLLDAILVGLYWPLR-IK-DIKKDEFTKVGA----RDTYID   72 (339)
T ss_dssp             CEEEEEEEEEETTEEEEE-E-ECCSEEEEEECCTTSSHHHHHHHHHHHHHCSCC-CT-TCCHHHHBCTTC----SEEEEE
T ss_pred             CeEEEEEEEcccCccCeE-E-cCCCCeEEEECCCCCCHHHHHHHHHHHhcCCcc-cC-cCCHHHHhcCCC----CeEEEE
Confidence            899999999999998755 6 788899999999999999999999998875321 11 111233343333    267899


Q ss_pred             EEEecCCCCCceeEEE
Q psy16868         81 IVFDNTDHRVPGFIRC   96 (109)
Q Consensus        81 ~~fq~~~~~~~~~~~~   96 (109)
                      +.|+.....+.+.++.
T Consensus        73 ~~~~~~~~~~~i~r~~   88 (339)
T 3qkt_A           73 LIFEKDGTKYRITRRF   88 (339)
T ss_dssp             EEEEETTEEEEEEEEE
T ss_pred             EEEEECCEEEEEEEEE
Confidence            9998876666555544

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.69  E-value=1.2e-17  Score=116.89  Aligned_cols=77  Identities=25%  Similarity=0.288  Sum_probs=61.3

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      .|+++|+ +.|....++++++     |++++|+|||||||||||++|+|++.|+.|.+.+.+...    ...  +..++.
T Consensus         3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~----~~~--~~~~r~   76 (381)
T 3rlf_A            3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRM----NDT--PPAERG   76 (381)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC----TTC--CGGGSC
T ss_pred             EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEEC----CCC--CHHHCC
Confidence            3889999 8898877777665     899999999999999999999999999999998655321    111  112456


Q ss_pred             EEEEEecCC
Q psy16868         79 VEIVFDNTD   87 (109)
Q Consensus        79 i~~~fq~~~   87 (109)
                      |+++||++.
T Consensus        77 ig~VfQ~~~   85 (381)
T 3rlf_A           77 VGMVFQSYA   85 (381)
T ss_dssp             EEEECTTCC
T ss_pred             EEEEecCCc
Confidence            999999873

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.68  E-value=5.8e-18  Score=113.55  Aligned_cols=80  Identities=23%  Similarity=0.333  Sum_probs=59.8

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|+ +.|++..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+....  .........++.|
T Consensus        25 l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~--~~~~~~~~~~~~i  102 (263)
T 2olj_A           25 IDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK--AKDTNLNKVREEV  102 (263)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESS--STTCCHHHHHHHE
T ss_pred             EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECC--CccccHHHHhCcE
Confidence            789999 7887766676665     8899999999999999999999999999999886553211  0111111123569


Q ss_pred             EEEEecCC
Q psy16868         80 EIVFDNTD   87 (109)
Q Consensus        80 ~~~fq~~~   87 (109)
                      +++||++.
T Consensus       103 ~~v~Q~~~  110 (263)
T 2olj_A          103 GMVFQRFN  110 (263)
T ss_dssp             EEECSSCC
T ss_pred             EEEeCCCc
Confidence            99999863

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.68  E-value=1.7e-17  Score=115.94  Aligned_cols=76  Identities=17%  Similarity=0.240  Sum_probs=58.1

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      .|+++|+ +.|.+..++++++     |++++|+|||||||||||++|+|++.|..|.+.+.+...    ...+  ..++.
T Consensus        11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i----~~~~--~~~r~   84 (372)
T 1v43_A           11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV----TYLP--PKDRN   84 (372)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC----TTSC--GGGGT
T ss_pred             eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEEC----CCCC--hhhCc
Confidence            4889999 7898766666665     899999999999999999999999999999998655311    1111  12456


Q ss_pred             EEEEEecC
Q psy16868         79 VEIVFDNT   86 (109)
Q Consensus        79 i~~~fq~~   86 (109)
                      |+++||++
T Consensus        85 ig~v~Q~~   92 (372)
T 1v43_A           85 ISMVFQSY   92 (372)
T ss_dssp             EEEEEC--
T ss_pred             EEEEecCc
Confidence            99999986

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.68  E-value=3.2e-18  Score=115.45  Aligned_cols=83  Identities=18%  Similarity=0.328  Sum_probs=61.1

Q ss_pred             EEEEece-eecCCC-eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          5 QVIIHGF-KSYKEQ-TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         5 ~i~i~n~-~~~~~~-~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      -|+++|+ +.|... .++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+....  .........+.
T Consensus         7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~--~~~~~~~~~~~   84 (275)
T 3gfo_A            7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPID--YSRKGIMKLRE   84 (275)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECC--CSHHHHHHHHH
T ss_pred             EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECC--cccccHHHHhC
Confidence            4899999 788653 4677766     8999999999999999999999999999999886553211  00001112245


Q ss_pred             EEEEEEecCCCC
Q psy16868         78 YVEIVFDNTDHR   89 (109)
Q Consensus        78 ~i~~~fq~~~~~   89 (109)
                      .|+++||++...
T Consensus        85 ~ig~v~Q~~~~~   96 (275)
T 3gfo_A           85 SIGIVFQDPDNQ   96 (275)
T ss_dssp             SEEEECSSGGGT
T ss_pred             cEEEEEcCcccc
Confidence            799999987543

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.67  E-value=5e-18  Score=113.44  Aligned_cols=79  Identities=15%  Similarity=0.215  Sum_probs=59.7

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      -|+++|+ +.|++..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...   .........+..
T Consensus         7 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~---~~~~~~~~~~~~   83 (257)
T 1g6h_A            7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI---TNKEPAELYHYG   83 (257)
T ss_dssp             EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC---TTCCHHHHHHHT
T ss_pred             EEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC---CCCCHHHHHhCC
Confidence            3889999 7898777777776     899999999999999999999999999999988555311   110000111346


Q ss_pred             EEEEEecC
Q psy16868         79 VEIVFDNT   86 (109)
Q Consensus        79 i~~~fq~~   86 (109)
                      |+++||++
T Consensus        84 i~~v~q~~   91 (257)
T 1g6h_A           84 IVRTFQTP   91 (257)
T ss_dssp             EEECCCCC
T ss_pred             EEEEccCC
Confidence            99999986

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.67  E-value=1.7e-17  Score=111.41  Aligned_cols=82  Identities=12%  Similarity=0.163  Sum_probs=62.4

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      -|+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...    .........+.
T Consensus        11 ~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~----~~~~~~~~~~~   86 (266)
T 4g1u_C           11 LLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNL----NSWQPKALART   86 (266)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEET----TTSCHHHHHHH
T ss_pred             eEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEC----CcCCHHHHhhe
Confidence            4889999 7888877777766     899999999999999999999999999999988655311    11111122345


Q ss_pred             EEEEEecCCCCC
Q psy16868         79 VEIVFDNTDHRV   90 (109)
Q Consensus        79 i~~~fq~~~~~~   90 (109)
                      ++++||++...+
T Consensus        87 i~~v~q~~~~~~   98 (266)
T 4g1u_C           87 RAVMRQYSELAF   98 (266)
T ss_dssp             EEEECSCCCCCS
T ss_pred             EEEEecCCccCC
Confidence            899999875433

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.67  E-value=3.8e-18  Score=111.96  Aligned_cols=79  Identities=14%  Similarity=0.244  Sum_probs=59.2

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCc---ee
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPR---VV   75 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~   75 (109)
                      -|+++|+ +.|++..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...    ......   ..
T Consensus         4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~----~~~~~~~~~~~   79 (224)
T 2pcj_A            4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEV----DYTNEKELSLL   79 (224)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEEC----CSSCHHHHHHH
T ss_pred             EEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC----CCCCHHHHHHH
Confidence            4889999 7887766677665     899999999999999999999999999999988554211    111100   11


Q ss_pred             -eEEEEEEEecCC
Q psy16868         76 -NAYVEIVFDNTD   87 (109)
Q Consensus        76 -~~~i~~~fq~~~   87 (109)
                       ...|+++||++.
T Consensus        80 ~~~~i~~v~q~~~   92 (224)
T 2pcj_A           80 RNRKLGFVFQFHY   92 (224)
T ss_dssp             HHHHEEEECSSCC
T ss_pred             HhCcEEEEecCcc
Confidence             246999999863

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.67  E-value=3e-17  Score=107.16  Aligned_cols=74  Identities=16%  Similarity=0.175  Sum_probs=59.5

Q ss_pred             eEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          4 KQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         4 ~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      ..|+++|+ +.|++ .++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+....      .   .+.
T Consensus         9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~------~---~~~   78 (214)
T 1sgw_A            9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT------K---VKG   78 (214)
T ss_dssp             CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG------G---GGG
T ss_pred             ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh------h---hcC
Confidence            35889999 78877 7677665     8999999999999999999999999999999886553211      1   245


Q ss_pred             EEEEEEecCC
Q psy16868         78 YVEIVFDNTD   87 (109)
Q Consensus        78 ~i~~~fq~~~   87 (109)
                      .|+++||++.
T Consensus        79 ~i~~v~q~~~   88 (214)
T 1sgw_A           79 KIFFLPEEII   88 (214)
T ss_dssp             GEEEECSSCC
T ss_pred             cEEEEeCCCc
Confidence            6999999864

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.66  E-value=3.3e-17  Score=114.48  Aligned_cols=83  Identities=18%  Similarity=0.183  Sum_probs=60.5

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      .|+++|+ +.|++..++++++     |++++|+|||||||||||++|+|++.|..|.+.+.+............+..++.
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~   82 (372)
T 1g29_1            3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD   82 (372)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred             EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence            4889999 7897766676665     899999999999999999999999999999998655321100000001112456


Q ss_pred             EEEEEecCC
Q psy16868         79 VEIVFDNTD   87 (109)
Q Consensus        79 i~~~fq~~~   87 (109)
                      |+++||++.
T Consensus        83 ig~v~Q~~~   91 (372)
T 1g29_1           83 IAMVFQSYA   91 (372)
T ss_dssp             EEEECSCCC
T ss_pred             EEEEeCCCc
Confidence            999999863

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.66  E-value=1.2e-17  Score=110.53  Aligned_cols=80  Identities=13%  Similarity=0.196  Sum_probs=59.0

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      -|+++|+ +.|....++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...   .........+..
T Consensus         6 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~---~~~~~~~~~~~~   82 (240)
T 1ji0_A            6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDI---TNKPAHVINRMG   82 (240)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC---TTCCHHHHHHTT
T ss_pred             eEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC---CCCCHHHHHhCC
Confidence            3889999 7887766676665     899999999999999999999999999999988554311   110000011234


Q ss_pred             EEEEEecCC
Q psy16868         79 VEIVFDNTD   87 (109)
Q Consensus        79 i~~~fq~~~   87 (109)
                      |+++||++.
T Consensus        83 i~~v~q~~~   91 (240)
T 1ji0_A           83 IALVPEGRR   91 (240)
T ss_dssp             EEEECSSCC
T ss_pred             EEEEecCCc
Confidence            999999863

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.66  E-value=3.3e-18  Score=113.02  Aligned_cols=78  Identities=17%  Similarity=0.262  Sum_probs=56.0

Q ss_pred             EEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCc--
Q psy16868          6 VIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPR--   73 (109)
Q Consensus         6 i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~--   73 (109)
                      |+++|+ +.|..    ..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...    ......  
T Consensus         2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~----~~~~~~~~   77 (235)
T 3tif_A            2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKT----NDLDDDEL   77 (235)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC----TTCCHHHH
T ss_pred             EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEc----ccCCHHHH
Confidence            577787 67753    23566655     899999999999999999999999999999988554311    111100  


Q ss_pred             --eeeEEEEEEEecCC
Q psy16868         74 --VVNAYVEIVFDNTD   87 (109)
Q Consensus        74 --~~~~~i~~~fq~~~   87 (109)
                        ..+..|+++||++.
T Consensus        78 ~~~~~~~i~~v~Q~~~   93 (235)
T 3tif_A           78 TKIRRDKIGFVFQQFN   93 (235)
T ss_dssp             HHHHHHHEEEECTTCC
T ss_pred             HHHhhccEEEEecCCc
Confidence              11245999999874

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.66  E-value=1e-16  Score=111.84  Aligned_cols=84  Identities=27%  Similarity=0.471  Sum_probs=62.5

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      |++.+|+++||++|.+.. + +|++++++|+|+||||||||++||++++.+....    ....+++..+..    .+.|.
T Consensus         3 M~l~~L~l~nFr~~~~~~-i-~f~~gl~vi~G~NGaGKT~ileAI~~~l~g~~r~----~~~~~~ir~g~~----~~~V~   72 (371)
T 3auy_A            3 MILKEIRMNNFKSHVNSR-I-KFEKGIVAIIGENGSGKSSIFEAVFFALFGAGSN----FNYDTIITKGKK----SVYVE   72 (371)
T ss_dssp             EEEEEEEEEEETTEEEEE-E-ECCSEEEEEEECTTSSHHHHHHHHHHHHHCCC-C----CCTTTTBCTTCS----EEEEE
T ss_pred             cEEeEEEEEccccccceE-E-ecCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCc----cchHhhccCCCC----cEEEE
Confidence            668899999999997654 6 8888999999999999999999999977655211    112335555433    67889


Q ss_pred             EEEecCCCCCceeE
Q psy16868         81 IVFDNTDHRVPGFI   94 (109)
Q Consensus        81 ~~fq~~~~~~~~~~   94 (109)
                      ++|...+..+.+.+
T Consensus        73 ~~f~~~~~~~~i~r   86 (371)
T 3auy_A           73 LDFEVNGNNYKIIR   86 (371)
T ss_dssp             EEEEETTEEEEEEE
T ss_pred             EEEEECCEEEEEEE
Confidence            99987655555544

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.65  E-value=5.2e-17  Score=113.03  Aligned_cols=76  Identities=16%  Similarity=0.232  Sum_probs=59.3

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|+ +.|++..++++++     |++++|+|||||||||||++|+|++.|+.|.+.+.+...    ....  ..++.|
T Consensus         4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i----~~~~--~~~r~i   77 (359)
T 2yyz_A            4 IRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLV----NDIP--PKYREV   77 (359)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEC----TTSC--GGGTTE
T ss_pred             EEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEEC----CCCC--hhhCcE
Confidence            788998 7887766666665     899999999999999999999999999999998655311    1111  123569


Q ss_pred             EEEEecCC
Q psy16868         80 EIVFDNTD   87 (109)
Q Consensus        80 ~~~fq~~~   87 (109)
                      +++||++.
T Consensus        78 g~v~Q~~~   85 (359)
T 2yyz_A           78 GMVFQNYA   85 (359)
T ss_dssp             EEECSSCC
T ss_pred             EEEecCcc
Confidence            99999863

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.65  E-value=6.3e-17  Score=112.71  Aligned_cols=76  Identities=18%  Similarity=0.314  Sum_probs=59.4

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|+ +.|++..++++++     |++++|+|||||||||||++|+|++.|+.|.+.+.+...    ....  ..++.|
T Consensus         4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i----~~~~--~~~r~i   77 (362)
T 2it1_A            4 IKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDV----TELP--PKDRNV   77 (362)
T ss_dssp             EEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC----TTSC--GGGTTE
T ss_pred             EEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEEC----CcCC--HhHCcE
Confidence            788999 7888766676665     899999999999999999999999999999988655311    1111  123569


Q ss_pred             EEEEecCC
Q psy16868         80 EIVFDNTD   87 (109)
Q Consensus        80 ~~~fq~~~   87 (109)
                      +++||++.
T Consensus        78 g~v~Q~~~   85 (362)
T 2it1_A           78 GLVFQNWA   85 (362)
T ss_dssp             EEECTTCC
T ss_pred             EEEecCcc
Confidence            99999863

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.65  E-value=2.5e-17  Score=110.05  Aligned_cols=78  Identities=15%  Similarity=0.253  Sum_probs=59.6

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      .|+++|+ +.|++..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...   ..  .....+..
T Consensus        15 ~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~---~~--~~~~~~~~   89 (256)
T 1vpl_A           15 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNV---VE--EPHEVRKL   89 (256)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEET---TT--CHHHHHTT
T ss_pred             eEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC---Cc--cHHHHhhc
Confidence            4788998 7887766676665     889999999999999999999999999999988555311   11  11112346


Q ss_pred             EEEEEecCC
Q psy16868         79 VEIVFDNTD   87 (109)
Q Consensus        79 i~~~fq~~~   87 (109)
                      |+++||++.
T Consensus        90 i~~v~q~~~   98 (256)
T 1vpl_A           90 ISYLPEEAG   98 (256)
T ss_dssp             EEEECTTCC
T ss_pred             EEEEcCCCC
Confidence            999999864

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.65  E-value=6.4e-16  Score=109.49  Aligned_cols=93  Identities=32%  Similarity=0.423  Sum_probs=59.2

Q ss_pred             CeeeEEEEeceeecCCCeeEecCC-CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCC-------
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFD-KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGP-------   72 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~-~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~-------   72 (109)
                      |+|.+|++.||++|.+...+ ++. +++++|+||||||||||++||++++.+.+...+ .....+++..+...       
T Consensus         2 m~i~~l~~~~~~~~~~~~~~-~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~~~R-~~~~~~lI~~g~~~~~~~~~~   79 (430)
T 1w1w_A            2 GRLVGLELSNFKSYRGVTKV-GFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLR-SNILKDLIYRGVLNDENSDDY   79 (430)
T ss_dssp             CCEEEEEEESCSSCCSEEEE-ECTTCSEEEEECSTTSSHHHHHHHHHHHTTC----------CGGGSCCC----------
T ss_pred             CeeEEEEEeCEEEECCceeE-EecCCCEEEEECCCCCCHHHHHHHHHhhhccccccch-hhhHHHHHhcCCccceeeEEe
Confidence            78999999999989765435 565 689999999999999999999999987654333 22234455544310       


Q ss_pred             --------ceeeEEEEEEEecCCCCCceeEE
Q psy16868         73 --------RVVNAYVEIVFDNTDHRVPGFIR   95 (109)
Q Consensus        73 --------~~~~~~i~~~fq~~~~~~~~~~~   95 (109)
                              .+....|...|+.....+.+.+.
T Consensus        80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~i~r~  110 (430)
T 1w1w_A           80 DNEGAASSNPQSAYVKAFYQKGNKLVELMRI  110 (430)
T ss_dssp             ---------CCEEEEEEEEEETTEEEEEEEE
T ss_pred             cccccccCCcccccceeeeccCCcEEEEEEE
Confidence                    01246677777654433344333

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.64  E-value=6.2e-17  Score=112.50  Aligned_cols=77  Identities=19%  Similarity=0.201  Sum_probs=59.5

Q ss_pred             EEEEece-eec-CCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          5 QVIIHGF-KSY-KEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         5 ~i~i~n~-~~~-~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      .|+++|+ +.| ++..++++++     |++++|+|||||||||||++|+|++.|..|.+.+.+...   . ..  +..++
T Consensus        14 ~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i---~-~~--~~~~r   87 (355)
T 1z47_A           14 TIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRV---T-DL--PPQKR   87 (355)
T ss_dssp             EEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEC---T-TC--CGGGS
T ss_pred             eEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEEC---C-cC--ChhhC
Confidence            4788999 788 6655566665     899999999999999999999999999999988655311   1 11  12246


Q ss_pred             EEEEEEecCC
Q psy16868         78 YVEIVFDNTD   87 (109)
Q Consensus        78 ~i~~~fq~~~   87 (109)
                      .|+++||++.
T Consensus        88 ~ig~v~Q~~~   97 (355)
T 1z47_A           88 NVGLVFQNYA   97 (355)
T ss_dssp             SEEEECGGGC
T ss_pred             cEEEEecCcc
Confidence            7999999863

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.64  E-value=3e-17  Score=114.07  Aligned_cols=81  Identities=17%  Similarity=0.214  Sum_probs=59.7

Q ss_pred             EEEece-eecCCCe--eEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          6 VIIHGF-KSYKEQT--VVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         6 i~i~n~-~~~~~~~--~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      |+++|+ +.|++..  ++++++     |++++|+|||||||||||++|+|++.|..|.+.+.+...... .....+..++
T Consensus         4 l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~-~~~~~~~~~r   82 (353)
T 1oxx_K            4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASN-GKLIVPPEDR   82 (353)
T ss_dssp             EEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEET-TEESSCGGGS
T ss_pred             EEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECccc-ccccCChhhC
Confidence            788888 7887665  676665     899999999999999999999999999999988655321100 0000122246


Q ss_pred             EEEEEEecCC
Q psy16868         78 YVEIVFDNTD   87 (109)
Q Consensus        78 ~i~~~fq~~~   87 (109)
                      .|+++||++.
T Consensus        83 ~ig~v~Q~~~   92 (353)
T 1oxx_K           83 KIGMVFQTWA   92 (353)
T ss_dssp             CEEEEETTSC
T ss_pred             CEEEEeCCCc
Confidence            7999999863

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.64  E-value=4.6e-17  Score=108.24  Aligned_cols=79  Identities=19%  Similarity=0.261  Sum_probs=59.2

Q ss_pred             EEEEece-eec--CCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSY--KEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~--~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .|+++|+ +.|  ....++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...    ........+
T Consensus         7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~----~~~~~~~~~   82 (247)
T 2ff7_A            7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDL----ALADPNWLR   82 (247)
T ss_dssp             EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEET----TTSCHHHHH
T ss_pred             ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEh----hhCCHHHHH
Confidence            5788999 788  3455676665     899999999999999999999999999999988654311    111111224


Q ss_pred             EEEEEEEecCC
Q psy16868         77 AYVEIVFDNTD   87 (109)
Q Consensus        77 ~~i~~~fq~~~   87 (109)
                      ..|+++||++.
T Consensus        83 ~~i~~v~Q~~~   93 (247)
T 2ff7_A           83 RQVGVVLQDNV   93 (247)
T ss_dssp             HHEEEECSSCC
T ss_pred             hcEEEEeCCCc
Confidence            56999999864

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.64  E-value=1.4e-17  Score=111.54  Aligned_cols=55  Identities=22%  Similarity=0.376  Sum_probs=48.3

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD   60 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~   60 (109)
                      |+++|+ +.|++..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+
T Consensus         7 l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g   67 (262)
T 1b0u_A            7 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNG   67 (262)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred             EEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence            889999 7887766676665     899999999999999999999999999999988655

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.63  E-value=4.5e-17  Score=107.99  Aligned_cols=78  Identities=10%  Similarity=0.182  Sum_probs=57.1

Q ss_pred             EEEece-eec-CCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          6 VIIHGF-KSY-KEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         6 i~i~n~-~~~-~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      |+++|+ +.| .+..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...    ........+..
T Consensus         2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~----~~~~~~~~~~~   77 (243)
T 1mv5_A            2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPI----DNISLENWRSQ   77 (243)
T ss_dssp             EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEES----TTTSCSCCTTT
T ss_pred             EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEh----hhCCHHHHHhh
Confidence            677888 678 4455566555     889999999999999999999999999999988655311    11111122456


Q ss_pred             EEEEEecCC
Q psy16868         79 VEIVFDNTD   87 (109)
Q Consensus        79 i~~~fq~~~   87 (109)
                      |+++||++.
T Consensus        78 i~~v~q~~~   86 (243)
T 1mv5_A           78 IGFVSQDSA   86 (243)
T ss_dssp             CCEECCSSC
T ss_pred             EEEEcCCCc
Confidence            899999863

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.63  E-value=3.2e-17  Score=110.73  Aligned_cols=81  Identities=12%  Similarity=0.158  Sum_probs=59.5

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      -|+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...  ..........++.
T Consensus        21 ~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~--~~~~~~~~~~~~~   98 (279)
T 2ihy_A           21 LIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMP--GKVGYSAETVRQH   98 (279)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCC--C---CCHHHHHTT
T ss_pred             eEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEc--ccccCCHHHHcCc
Confidence            3788999 7887766677665     899999999999999999999999999999988554311  0001111112356


Q ss_pred             EEEEEecCC
Q psy16868         79 VEIVFDNTD   87 (109)
Q Consensus        79 i~~~fq~~~   87 (109)
                      |+++||++.
T Consensus        99 i~~v~Q~~~  107 (279)
T 2ihy_A           99 IGFVSHSLL  107 (279)
T ss_dssp             EEEECHHHH
T ss_pred             EEEEEcCcc
Confidence            999999854

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.62  E-value=3.7e-17  Score=113.90  Aligned_cols=81  Identities=12%  Similarity=0.245  Sum_probs=58.1

Q ss_pred             EEEece-eecCC----CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868          6 VIIHGF-KSYKE----QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV   75 (109)
Q Consensus         6 i~i~n~-~~~~~----~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (109)
                      |+++|+ +.|..    ..++++++     |++++|+||||||||||+++|+|++.|+.|.+.+.+...... ........
T Consensus        25 i~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~-~~~~~~~~  103 (366)
T 3tui_C           25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTL-SESELTKA  103 (366)
T ss_dssp             EEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSC-CHHHHHHH
T ss_pred             EEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcC-CHHHHHHH
Confidence            788898 77853    24566665     899999999999999999999999999999988655311100 00001112


Q ss_pred             eEEEEEEEecCC
Q psy16868         76 NAYVEIVFDNTD   87 (109)
Q Consensus        76 ~~~i~~~fq~~~   87 (109)
                      ++.|+++||++.
T Consensus       104 r~~Ig~v~Q~~~  115 (366)
T 3tui_C          104 RRQIGMIFQHFN  115 (366)
T ss_dssp             HTTEEEECSSCC
T ss_pred             hCcEEEEeCCCc
Confidence            356999999874

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.62  E-value=6.1e-17  Score=108.94  Aligned_cols=78  Identities=18%  Similarity=0.169  Sum_probs=58.1

Q ss_pred             EEEece-eecCC---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          6 VIIHGF-KSYKE---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         6 i~i~n~-~~~~~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      |+++|+ +.|.+   ..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+...   . .......+
T Consensus        17 l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i---~-~~~~~~~~   92 (271)
T 2ixe_A           17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPL---V-QYDHHYLH   92 (271)
T ss_dssp             EEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEG---G-GBCHHHHH
T ss_pred             EEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEc---c-cCCHHHHh
Confidence            788898 77865   45566655     889999999999999999999999999999988655311   1 11111224


Q ss_pred             EEEEEEEecCC
Q psy16868         77 AYVEIVFDNTD   87 (109)
Q Consensus        77 ~~i~~~fq~~~   87 (109)
                      ..|+++||++.
T Consensus        93 ~~i~~v~Q~~~  103 (271)
T 2ixe_A           93 TQVAAVGQEPL  103 (271)
T ss_dssp             HHEEEECSSCC
T ss_pred             ccEEEEecCCc
Confidence            56999999863

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.61  E-value=9.5e-17  Score=111.32  Aligned_cols=75  Identities=16%  Similarity=0.233  Sum_probs=58.1

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|+ +.|++. ++++++     |++++|+|||||||||||++|+|++.|..|.+.+.+...   . .  .+..++.|
T Consensus         2 l~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i---~-~--~~~~~r~i   74 (348)
T 3d31_A            2 IEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDV---T-D--LSPEKHDI   74 (348)
T ss_dssp             EEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEEC---T-T--SCHHHHTC
T ss_pred             EEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEEC---C-C--CchhhCcE
Confidence            678888 788766 676665     899999999999999999999999999999988655311   1 1  12224569


Q ss_pred             EEEEecCC
Q psy16868         80 EIVFDNTD   87 (109)
Q Consensus        80 ~~~fq~~~   87 (109)
                      +++||++.
T Consensus        75 g~v~Q~~~   82 (348)
T 3d31_A           75 AFVYQNYS   82 (348)
T ss_dssp             EEECTTCC
T ss_pred             EEEecCcc
Confidence            99999863

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.61  E-value=2.3e-16  Score=104.26  Aligned_cols=65  Identities=15%  Similarity=0.184  Sum_probs=53.0

Q ss_pred             EEEece-eecC--CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          6 VIIHGF-KSYK--EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         6 i~i~n~-~~~~--~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      |+++|+ +.|.  +..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+                 
T Consensus         4 l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-----------------   66 (237)
T 2cbz_A            4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-----------------   66 (237)
T ss_dssp             EEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-----------------
T ss_pred             EEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-----------------
Confidence            788888 7786  344566655     899999999999999999999999999999987332                 


Q ss_pred             EEEEEEecCC
Q psy16868         78 YVEIVFDNTD   87 (109)
Q Consensus        78 ~i~~~fq~~~   87 (109)
                      .|+++||++.
T Consensus        67 ~i~~v~Q~~~   76 (237)
T 2cbz_A           67 SVAYVPQQAW   76 (237)
T ss_dssp             CEEEECSSCC
T ss_pred             EEEEEcCCCc
Confidence            2888888763

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.61  E-value=5e-16  Score=103.58  Aligned_cols=67  Identities=16%  Similarity=0.212  Sum_probs=55.4

Q ss_pred             EEEEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          5 QVIIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         5 ~i~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      -|+++|+ +.|. +..++++++     |++++|+||||||||||+++|+|++.|..|.+.                 .+.
T Consensus         4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-----------------~~~   66 (253)
T 2nq2_C            4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-----------------VYQ   66 (253)
T ss_dssp             EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-----------------ECS
T ss_pred             eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-----------------Eec
Confidence            3889999 7887 666677665     899999999999999999999999999999864                 124


Q ss_pred             EEEEEEecCCC
Q psy16868         78 YVEIVFDNTDH   88 (109)
Q Consensus        78 ~i~~~fq~~~~   88 (109)
                      .|+++||++..
T Consensus        67 ~i~~v~q~~~~   77 (253)
T 2nq2_C           67 SIGFVPQFFSS   77 (253)
T ss_dssp             CEEEECSCCCC
T ss_pred             cEEEEcCCCcc
Confidence            58999998643

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.60  E-value=3.9e-16  Score=102.70  Aligned_cols=67  Identities=16%  Similarity=0.296  Sum_probs=54.0

Q ss_pred             eEEEEece-eecC--CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868          4 KQVIIHGF-KSYK--EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV   75 (109)
Q Consensus         4 ~~i~i~n~-~~~~--~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (109)
                      ..|+++|+ +.|.  +..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+               
T Consensus         5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g---------------   69 (229)
T 2pze_A            5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------------   69 (229)
T ss_dssp             EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---------------
T ss_pred             ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---------------
Confidence            35889999 7784  344566665     899999999999999999999999999999987332               


Q ss_pred             eEEEEEEEecCC
Q psy16868         76 NAYVEIVFDNTD   87 (109)
Q Consensus        76 ~~~i~~~fq~~~   87 (109)
                        .|++++|++.
T Consensus        70 --~i~~v~q~~~   79 (229)
T 2pze_A           70 --RISFCSQFSW   79 (229)
T ss_dssp             --CEEEECSSCC
T ss_pred             --EEEEEecCCc
Confidence              3788888763

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.60  E-value=1.8e-16  Score=106.42  Aligned_cols=74  Identities=16%  Similarity=0.265  Sum_probs=56.2

Q ss_pred             EEEece-eecC--C---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCce
Q psy16868          6 VIIHGF-KSYK--E---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRV   74 (109)
Q Consensus         6 i~i~n~-~~~~--~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   74 (109)
                      |+++|+ +.|.  .   ..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+....  ..     .
T Consensus         3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~--~~-----~   75 (266)
T 2yz2_A            3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKK--GY-----E   75 (266)
T ss_dssp             EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECC--HH-----H
T ss_pred             EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECc--hH-----H
Confidence            678888 7786  3   34566665     8999999999999999999999999999999885543110  00     1


Q ss_pred             eeEEEEEEEecC
Q psy16868         75 VNAYVEIVFDNT   86 (109)
Q Consensus        75 ~~~~i~~~fq~~   86 (109)
                      .+..|+++||++
T Consensus        76 ~~~~i~~v~q~~   87 (266)
T 2yz2_A           76 IRRNIGIAFQYP   87 (266)
T ss_dssp             HGGGEEEECSSG
T ss_pred             hhhhEEEEeccc
Confidence            234699999985

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.60  E-value=1.6e-16  Score=106.74  Aligned_cols=79  Identities=13%  Similarity=0.145  Sum_probs=56.7

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhh--ccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVL--SDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      |+++|+ +.|++..++++++     |++++|+||||||||||+++|+|++  .|..|.+.+.+...   .........+.
T Consensus        21 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i---~~~~~~~~~~~   97 (267)
T 2zu0_C           21 LSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL---LALSPEDRAGE   97 (267)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG---GGSCHHHHHHH
T ss_pred             EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC---CcCCHHHHhhC
Confidence            788898 7887766676665     8999999999999999999999994  57889887555311   11000001123


Q ss_pred             EEEEEEecCC
Q psy16868         78 YVEIVFDNTD   87 (109)
Q Consensus        78 ~i~~~fq~~~   87 (109)
                      .|+++||++.
T Consensus        98 ~i~~v~Q~~~  107 (267)
T 2zu0_C           98 GIFMAFQYPV  107 (267)
T ss_dssp             TEEEECSSCC
T ss_pred             CEEEEccCcc
Confidence            4899999874

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.59  E-value=5.5e-17  Score=107.98  Aligned_cols=78  Identities=15%  Similarity=0.163  Sum_probs=56.5

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHh--hccCcccccccchhhhhhhcCCCCc-eee
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFV--LSDESTSLRHSDSRQALLHEGTGPR-VVN   76 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~--l~~~~~~~~~~~~~~~~~~~~~~~~-~~~   76 (109)
                      |+++|+ +.|.+..++++++     |++++|+||||||||||+++|+|+  +.|..|.+.+.+...   . ..... ..+
T Consensus         4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~---~-~~~~~~~~~   79 (250)
T 2d2e_A            4 LEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENI---L-ELSPDERAR   79 (250)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEC---T-TSCHHHHHH
T ss_pred             EEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEEC---C-CCCHHHHHh
Confidence            788898 7887766677665     899999999999999999999998  678889988554311   0 11100 012


Q ss_pred             EEEEEEEecCC
Q psy16868         77 AYVEIVFDNTD   87 (109)
Q Consensus        77 ~~i~~~fq~~~   87 (109)
                      ..++++||++.
T Consensus        80 ~~i~~v~q~~~   90 (250)
T 2d2e_A           80 KGLFLAFQYPV   90 (250)
T ss_dssp             TTBCCCCCCCC
T ss_pred             CcEEEeccCCc
Confidence            34788888764

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.59  E-value=2.7e-15  Score=104.60  Aligned_cols=88  Identities=23%  Similarity=0.311  Sum_probs=61.3

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      |++.++++.||++|.+.. + +|+.++++|+||||||||||++||++++++...... ..  .+......  ......|.
T Consensus         1 M~~~~l~~~~f~~~~~~~-i-~~~~g~~~i~G~NGaGKTTll~ai~~al~g~~~r~~-~~--~~~~~~~~--~~~~~~v~   73 (365)
T 3qf7_A            1 MRPERLTVRNFLGLKNVD-I-EFQSGITVVEGPNGAGKSSLFEAISFALFGNGIRYP-NS--YDYVNRNA--VDGTARLV   73 (365)
T ss_dssp             CEEEEEEEEEETTEEEEE-E-ECCSEEEEEECCTTSSHHHHHHHHHHHHHSCCSSCS-SG--GGGBCTTC--TTCEEEEE
T ss_pred             CeeEEEEEeCccCccceE-E-ecCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccc-Cc--chhhhccC--CCCcEEEE
Confidence            899999999999998765 5 777679999999999999999999999986533211 11  11111111  11256777


Q ss_pred             EEEecCCCCCceeEE
Q psy16868         81 IVFDNTDHRVPGFIR   95 (109)
Q Consensus        81 ~~fq~~~~~~~~~~~   95 (109)
                      +.|......+.+.+.
T Consensus        74 ~~f~~~g~~y~v~R~   88 (365)
T 3qf7_A           74 FQFERGGKRYEIIRE   88 (365)
T ss_dssp             EEEEETTEEEEEEEE
T ss_pred             EEEEECCEEEEEEEE
Confidence            888776655555543

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.59  E-value=1.3e-16  Score=109.03  Aligned_cols=79  Identities=15%  Similarity=0.196  Sum_probs=59.9

Q ss_pred             EEEEece-eecC-CCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          5 QVIIHGF-KSYK-EQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         5 ~i~i~n~-~~~~-~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      .|+++|+ ..|. ...++++++     |++++|+||||||||||+++|++++.|..|.+.+++...    ........+.
T Consensus        53 ~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i----~~~~~~~~r~  128 (306)
T 3nh6_A           53 RIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDI----SQVTQASLRS  128 (306)
T ss_dssp             CEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEET----TSBCHHHHHH
T ss_pred             eEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEc----ccCCHHHHhc
Confidence            4788998 7885 345676665     899999999999999999999999999999988655311    1112222356


Q ss_pred             EEEEEEecCC
Q psy16868         78 YVEIVFDNTD   87 (109)
Q Consensus        78 ~i~~~fq~~~   87 (109)
                      .|+++||++.
T Consensus       129 ~i~~v~Q~~~  138 (306)
T 3nh6_A          129 HIGVVPQDTV  138 (306)
T ss_dssp             TEEEECSSCC
T ss_pred             ceEEEecCCc
Confidence            7999999863

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.58  E-value=5.2e-15  Score=102.98  Aligned_cols=85  Identities=19%  Similarity=0.307  Sum_probs=62.2

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      |+|++|++.||++|.+.. + .++.++++|+||||||||||++||+++..+. -.   .....+++..+..    ...|.
T Consensus         4 M~i~~L~l~~~~~~~~~~-~-~~~~g~~~i~G~nG~GKttll~ai~~~~~g~-~R---~~~~~~lI~~g~~----~~~V~   73 (359)
T 2o5v_A            4 VRLSALSTLNYRNLAPGT-L-NFPEGVTGIYGENGAGKTNLLEAAYLALTGQ-TD---APRIEQLIQAGET----EAYVR   73 (359)
T ss_dssp             CCEEEEEEESBTTCCSEE-E-ECCSEEEEEECCTTSSHHHHHHHHHHHHHSC-CC---CSSGGGGBCTTCS----CEEEE
T ss_pred             cEEeEEEEeCccceeeeE-E-EEcCCeEEEECCCCCChhHHHHHHHHhccCC-CC---CCCHHHHhccCCC----cEEEE
Confidence            789999999999997655 5 7776799999999999999999999988654 22   2224445655544    47777


Q ss_pred             EEEecCCCCCceeEE
Q psy16868         81 IVFDNTDHRVPGFIR   95 (109)
Q Consensus        81 ~~fq~~~~~~~~~~~   95 (109)
                      ..|+.....+.+.+.
T Consensus        74 ~~~~~~~~~~~i~~~   88 (359)
T 2o5v_A           74 ADLQQGGSLSIQEVG   88 (359)
T ss_dssp             EEEEETTEEEEEEEE
T ss_pred             EEEecCCceEEEEEE
Confidence            777765544444443

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.58  E-value=2.8e-16  Score=110.36  Aligned_cols=78  Identities=15%  Similarity=0.233  Sum_probs=58.1

Q ss_pred             EEEEece-eec--CCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSY--KEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~--~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .|+++|+ +.|  ....++++++     |++++|+|||||||||||++|+|++. ..|.+.+.+...    ........+
T Consensus        19 ~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i----~~~~~~~~r   93 (390)
T 3gd7_A           19 QMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSW----DSITLEQWR   93 (390)
T ss_dssp             CEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBT----TSSCHHHHH
T ss_pred             eEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEEC----CcCChHHHh
Confidence            4889999 788  4455666665     89999999999999999999999998 789888555311    111212224


Q ss_pred             EEEEEEEecCC
Q psy16868         77 AYVEIVFDNTD   87 (109)
Q Consensus        77 ~~i~~~fq~~~   87 (109)
                      +.|+++||++.
T Consensus        94 r~ig~v~Q~~~  104 (390)
T 3gd7_A           94 KAFGVIPQKVF  104 (390)
T ss_dssp             HTEEEESCCCC
T ss_pred             CCEEEEcCCcc
Confidence            56999999863

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.57  E-value=2.4e-15  Score=108.74  Aligned_cols=83  Identities=16%  Similarity=0.239  Sum_probs=60.1

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      |+|.+|+++||+.|.+.. + +|++++++|+|+|||||||||+||++++.....        .+++..+..    .+.|.
T Consensus        38 M~l~~L~i~nf~~~~~~~-l-~f~~g~n~i~G~NGaGKS~lleAl~~llg~r~~--------~~~i~~g~~----~a~v~  103 (517)
T 4ad8_A           38 PRLSRLEIRNLATITQLE-L-ELGGGFCAFTGETGAGKSIIVDALGLLLGGRAN--------HDLIRSGEK----ELLVT  103 (517)
T ss_dssp             CCCCEEEEESBTTBSCEE-E-ECCCSEEEEEESHHHHHHHHTHHHHHHTCSCCC--------GGGBCTTCS----EEEEE
T ss_pred             ceeeeeecccccceeeEE-E-ecCCCeEEEEcCCCCCHHHHHHHHHHHhcCCcH--------HHHhcCCCC----cEEEE
Confidence            789999999999998766 6 788789999999999999999999999986432        224555544    67888


Q ss_pred             EEE-ecC-CCCCceeEEEe
Q psy16868         81 IVF-DNT-DHRVPGFIRCR   97 (109)
Q Consensus        81 ~~f-q~~-~~~~~~~~~~~   97 (109)
                      .+| ... +..+.+.+...
T Consensus       104 ~~f~~~~~~~~~~i~r~~~  122 (517)
T 4ad8_A          104 GFWGDGDESEADSASRRLS  122 (517)
T ss_dssp             EEC--------CEEEEEEE
T ss_pred             EEEEecCCCCeEEEEEEEe
Confidence            888 654 33444444433

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.55  E-value=5.7e-16  Score=103.66  Aligned_cols=77  Identities=16%  Similarity=0.220  Sum_probs=55.4

Q ss_pred             EEEece-eecCC---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          6 VIIHGF-KSYKE---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         6 i~i~n~-~~~~~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      |+++|+ +.|.+   ..++++++     |++++|+||||||||||+++|+|++.+ .|.+.+.+...   . .......+
T Consensus        18 l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i---~-~~~~~~~~   92 (260)
T 2ghi_A           18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNV---N-KYNRNSIR   92 (260)
T ss_dssp             EEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEG---G-GBCHHHHH
T ss_pred             EEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEh---h-hcCHHHHh
Confidence            788888 77865   23566555     899999999999999999999999986 79887554311   1 11111124


Q ss_pred             EEEEEEEecCC
Q psy16868         77 AYVEIVFDNTD   87 (109)
Q Consensus        77 ~~i~~~fq~~~   87 (109)
                      ..|+++||++.
T Consensus        93 ~~i~~v~Q~~~  103 (260)
T 2ghi_A           93 SIIGIVPQDTI  103 (260)
T ss_dssp             TTEEEECSSCC
T ss_pred             ccEEEEcCCCc
Confidence            56999999863

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.52  E-value=1.7e-15  Score=100.30  Aligned_cols=74  Identities=16%  Similarity=0.135  Sum_probs=53.0

Q ss_pred             EEEece-eecCCCeeEecCC----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      |+++|+ +.|+..  +++++    .++++|+||||||||||+++|+|++.|..|.+.+.+...   .. .  ...+..|+
T Consensus         2 l~~~~l~~~y~~~--l~~isl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~---~~-~--~~~~~~i~   73 (240)
T 2onk_A            2 FLKVRAEKRLGNF--RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI---TP-L--PPERRGIG   73 (240)
T ss_dssp             CEEEEEEEEETTE--EEEEEEEECSSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC---TT-S--CTTTSCCB
T ss_pred             EEEEEEEEEeCCE--EeeeEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC---Cc-C--chhhCcEE
Confidence            567777 667542  44433    489999999999999999999999999999988655311   11 1  11135689


Q ss_pred             EEEecCC
Q psy16868         81 IVFDNTD   87 (109)
Q Consensus        81 ~~fq~~~   87 (109)
                      ++||++.
T Consensus        74 ~v~q~~~   80 (240)
T 2onk_A           74 FVPQDYA   80 (240)
T ss_dssp             CCCSSCC
T ss_pred             EEcCCCc
Confidence            9999863

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=99.51  E-value=4.3e-16  Score=102.48  Aligned_cols=58  Identities=21%  Similarity=0.295  Sum_probs=46.0

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD   60 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~   60 (109)
                      |++..|++.||..|.... + +|+.++++|+||||||||||+++|+|++.|..|.+.+.+
T Consensus         5 ~k~~~l~l~~~~~~~~~~-~-~~~~~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g   62 (227)
T 1qhl_A            5 GKFRSLTLINWNGFFART-F-DLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN   62 (227)
T ss_dssp             CEEEEEEEEEETTEEEEE-E-CHHHHHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC----
T ss_pred             ceeeEEEEEeeecccCCE-E-EEcCcEEEEECCCCCCHHHHHHHHhcccccCCCeEEECC
Confidence            889999999995543333 4 555678999999999999999999999999999887554

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.51  E-value=2.5e-15  Score=100.74  Aligned_cols=75  Identities=16%  Similarity=0.176  Sum_probs=54.4

Q ss_pred             EEEece-eecCC----CeeEecCC----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          6 VIIHGF-KSYKE----QTVVEPFD----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         6 i~i~n~-~~~~~----~~~l~~~~----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      |+++|+ +.|.+    ..++++++    |++++|+||||||||||+++|+|++ |..|.+.+.+...   ...   .. +
T Consensus         2 l~~~~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~---~~~---~~-~   73 (263)
T 2pjz_A            2 IQLKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEV---RKI---RN-Y   73 (263)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEG---GGC---SC-C
T ss_pred             EEEEEEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEEC---cch---HH-h
Confidence            567777 66754    44454443    7899999999999999999999999 9999988655321   111   11 4


Q ss_pred             EEEE-EEEecCCC
Q psy16868         77 AYVE-IVFDNTDH   88 (109)
Q Consensus        77 ~~i~-~~fq~~~~   88 (109)
                      ..|+ ++||++..
T Consensus        74 ~~i~~~v~Q~~~l   86 (263)
T 2pjz_A           74 IRYSTNLPEAYEI   86 (263)
T ss_dssp             TTEEECCGGGSCT
T ss_pred             hheEEEeCCCCcc
Confidence            5688 99998753

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.50  E-value=1.6e-15  Score=100.92  Aligned_cols=74  Identities=15%  Similarity=0.174  Sum_probs=52.3

Q ss_pred             EEEeceeecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          6 VIIHGFKSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         6 i~i~n~~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      ++++|+...   .++++++     |++++|+||||||||||+++|+|++.|. |.+.+.+...   .. ......+..|+
T Consensus         5 l~~~~l~~~---~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~---~~-~~~~~~~~~i~   76 (249)
T 2qi9_C            5 MQLQDVAES---TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPL---EA-WSATKLALHRA   76 (249)
T ss_dssp             EEEEEEEET---TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEG---GG-SCHHHHHHHEE
T ss_pred             EEEEceEEE---EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEEC---Cc-CCHHHHhceEE
Confidence            677777221   2354444     8899999999999999999999999999 9988655311   11 11112235699


Q ss_pred             EEEecCC
Q psy16868         81 IVFDNTD   87 (109)
Q Consensus        81 ~~fq~~~   87 (109)
                      ++||++.
T Consensus        77 ~v~q~~~   83 (249)
T 2qi9_C           77 YLSQQQT   83 (249)
T ss_dssp             EECSCCC
T ss_pred             EECCCCc
Confidence            9999874

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.50  E-value=7.8e-15  Score=107.40  Aligned_cols=79  Identities=18%  Similarity=0.200  Sum_probs=59.8

Q ss_pred             EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .|+++|+ ..|.+  ..++++++     |++++|+||||||||||+++|+|++.|..|.+.+++...    ...+....+
T Consensus       341 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~----~~~~~~~~~  416 (582)
T 3b5x_A          341 EVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDV----RDYKLTNLR  416 (582)
T ss_pred             eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEh----hhCCHHHHh
Confidence            4788898 78864  44566665     899999999999999999999999999999988655321    111122235


Q ss_pred             EEEEEEEecCC
Q psy16868         77 AYVEIVFDNTD   87 (109)
Q Consensus        77 ~~i~~~fq~~~   87 (109)
                      ..|++++|++.
T Consensus       417 ~~i~~v~Q~~~  427 (582)
T 3b5x_A          417 RHFALVSQNVH  427 (582)
T ss_pred             cCeEEEcCCCc
Confidence            67999999863

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.48  E-value=2.8e-14  Score=100.26  Aligned_cols=69  Identities=16%  Similarity=0.275  Sum_probs=53.0

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      |++..|++.||+.+.+.. + .+++++++|+|||||||||||+||++++.+..+.        +++..+..    ...|.
T Consensus        38 m~l~~L~i~nf~~l~~v~-l-~~~~G~~~lvG~NGaGKStLl~aI~~l~~~~~~~--------~~i~~g~~----~~~v~  103 (415)
T 4aby_A           38 PRLSRLEIRNLATITQLE-L-ELGGGFCAFTGETGAGKSIIVDALGLLLGGRANH--------DLIRSGEK----ELLVT  103 (415)
T ss_dssp             CCCCEEEEEEETTEEEEE-E-ECCSSEEEEEESHHHHHHHHTHHHHHHTTCCCCG--------GGBCTTCS----EEEEE
T ss_pred             cEeeeehhccccceeeEE-E-ecCCCcEEEECCCCCCHHHHHHHHHHHhCCCccH--------HHhcCCCC----eEEEE
Confidence            778899999998887666 5 6665599999999999999999999999875432        23444433    56666


Q ss_pred             EEE
Q psy16868         81 IVF   83 (109)
Q Consensus        81 ~~f   83 (109)
                      ..|
T Consensus       104 ~~~  106 (415)
T 4aby_A          104 GFW  106 (415)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            666

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.47  E-value=9.7e-15  Score=99.08  Aligned_cols=64  Identities=19%  Similarity=0.295  Sum_probs=43.9

Q ss_pred             EEEeceeecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEE
Q psy16868          6 VIIHGFKSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVE   80 (109)
Q Consensus         6 i~i~n~~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (109)
                      |+++|+.. ....++++++     |++++|+||||||||||+++|+|++.|..|.+.+.+                 .|+
T Consensus        41 l~~~~l~~-~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-----------------~i~  102 (290)
T 2bbs_A           41 LSFSNFSL-LGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-----------------RIS  102 (290)
T ss_dssp             ----------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-----------------CEE
T ss_pred             EEEEEEEE-cCceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-----------------EEE
Confidence            56667621 1233455554     899999999999999999999999999999987322                 388


Q ss_pred             EEEecCC
Q psy16868         81 IVFDNTD   87 (109)
Q Consensus        81 ~~fq~~~   87 (109)
                      ++||++.
T Consensus       103 ~v~Q~~~  109 (290)
T 2bbs_A          103 FCSQNSW  109 (290)
T ss_dssp             EECSSCC
T ss_pred             EEeCCCc
Confidence            8888763

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.47  E-value=8.6e-15  Score=107.18  Aligned_cols=79  Identities=16%  Similarity=0.188  Sum_probs=59.1

Q ss_pred             EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .|+++|+ ..|.+  ..++++++     |+.++|+||||||||||+++|+|++.|..|.+.+++...    ...+....+
T Consensus       341 ~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~----~~~~~~~~~  416 (582)
T 3b60_A          341 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDL----REYTLASLR  416 (582)
T ss_dssp             CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEET----TTBCHHHHH
T ss_pred             cEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEc----cccCHHHHH
Confidence            3788898 77863  44566665     899999999999999999999999999999988655311    111112234


Q ss_pred             EEEEEEEecCC
Q psy16868         77 AYVEIVFDNTD   87 (109)
Q Consensus        77 ~~i~~~fq~~~   87 (109)
                      ..|++++|++.
T Consensus       417 ~~i~~v~Q~~~  427 (582)
T 3b60_A          417 NQVALVSQNVH  427 (582)
T ss_dssp             HTEEEECSSCC
T ss_pred             hhCeEEccCCc
Confidence            56999999874

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.44  E-value=1.1e-14  Score=107.02  Aligned_cols=79  Identities=15%  Similarity=0.221  Sum_probs=58.9

Q ss_pred             EEEEece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeE
Q psy16868          5 QVIIHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNA   77 (109)
Q Consensus         5 ~i~i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (109)
                      .|+++|+ ..|.+ ..++++++     |+.++|+||||||||||+++|+|++.|..|.+.+++...    ........+.
T Consensus       354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i----~~~~~~~~r~  429 (598)
T 3qf4_B          354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDI----RKIKRSSLRS  429 (598)
T ss_dssp             CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEG----GGSCHHHHHH
T ss_pred             eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEh----hhCCHHHHHh
Confidence            4788898 67854 33455554     899999999999999999999999999999988655321    1112222356


Q ss_pred             EEEEEEecCC
Q psy16868         78 YVEIVFDNTD   87 (109)
Q Consensus        78 ~i~~~fq~~~   87 (109)
                      .|++++|++.
T Consensus       430 ~i~~v~Q~~~  439 (598)
T 3qf4_B          430 SIGIVLQDTI  439 (598)
T ss_dssp             HEEEECTTCC
T ss_pred             ceEEEeCCCc
Confidence            7999999873

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.43  E-value=9.1e-15  Score=107.00  Aligned_cols=79  Identities=14%  Similarity=0.172  Sum_probs=59.3

Q ss_pred             EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .++++|+ ..|.+  ..++++++     |+.++|+||||||||||+++|.|++.|..|.+.+++...    ........+
T Consensus       339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~----~~~~~~~~r  414 (578)
T 4a82_A          339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNI----KDFLTGSLR  414 (578)
T ss_dssp             CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEG----GGSCHHHHH
T ss_pred             eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEh----hhCCHHHHh
Confidence            4788898 77854  34566665     899999999999999999999999999999988655321    111222235


Q ss_pred             EEEEEEEecCC
Q psy16868         77 AYVEIVFDNTD   87 (109)
Q Consensus        77 ~~i~~~fq~~~   87 (109)
                      ..|++++|++.
T Consensus       415 ~~i~~v~Q~~~  425 (578)
T 4a82_A          415 NQIGLVQQDNI  425 (578)
T ss_dssp             HTEEEECSSCC
T ss_pred             hheEEEeCCCc
Confidence            57999999863

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.43  E-value=1.1e-14  Score=106.73  Aligned_cols=79  Identities=19%  Similarity=0.211  Sum_probs=59.4

Q ss_pred             EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .|+++|+ ..|.+  ..++++++     |+.++|+||||||||||+++|.+++.|..|.+.+++...    ...+....+
T Consensus       341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i----~~~~~~~~r  416 (587)
T 3qf4_A          341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDV----RTVKLKDLR  416 (587)
T ss_dssp             CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBG----GGBCHHHHH
T ss_pred             cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEc----ccCCHHHHH
Confidence            4788998 77843  34566665     899999999999999999999999999999988655321    111222235


Q ss_pred             EEEEEEEecCC
Q psy16868         77 AYVEIVFDNTD   87 (109)
Q Consensus        77 ~~i~~~fq~~~   87 (109)
                      ..|++++|++.
T Consensus       417 ~~i~~v~Q~~~  427 (587)
T 3qf4_A          417 GHISAVPQETV  427 (587)
T ss_dssp             HHEEEECSSCC
T ss_pred             hheEEECCCCc
Confidence            67999999873

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.37  E-value=4.4e-15  Score=96.48  Aligned_cols=66  Identities=15%  Similarity=0.147  Sum_probs=44.4

Q ss_pred             ecCCCeeEecCC-CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868         13 SYKEQTVVEPFD-KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT   86 (109)
Q Consensus        13 ~~~~~~~l~~~~-~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~   86 (109)
                      +|++..+++++. +++++|+||||||||||+++|+|+ .|..|.+.. .   . ....  ....+..|+++||++
T Consensus         9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~-~---~-~~~~--~~~~~~~ig~v~q~~   75 (208)
T 3b85_A            9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR-I---I-LTRP--AVEAGEKLGFLPGTL   75 (208)
T ss_dssp             SHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE-E---E-EEEC--SCCTTCCCCSSCC--
T ss_pred             CHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee-E---E-ecCC--chhhhcceEEecCCH
Confidence            344444455555 889999999999999999999999 998998751 1   1 1111  111245688889876

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.35  E-value=1.1e-12  Score=96.55  Aligned_cols=67  Identities=19%  Similarity=0.135  Sum_probs=52.9

Q ss_pred             EEEEece-eecCCCeeEecC-----CCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPF-----DKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~-----~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      .++++|+ +.|++.. +...     .|++++|+||||||||||+++|+|++.|..|.+.+                 ...
T Consensus       357 ~l~~~~l~~~~~~~~-l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-----------------~~~  418 (607)
T 3bk7_A          357 LVEYPRLVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-----------------DLT  418 (607)
T ss_dssp             EEEECCEEEECSSCE-EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-----------------CCC
T ss_pred             EEEEeceEEEecceE-EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-----------------eeE
Confidence            4778888 6777654 5443     28999999999999999999999999999998762                 124


Q ss_pred             EEEEEecCCCC
Q psy16868         79 VEIVFDNTDHR   89 (109)
Q Consensus        79 i~~~fq~~~~~   89 (109)
                      |++++|++...
T Consensus       419 i~~v~Q~~~~~  429 (607)
T 3bk7_A          419 VAYKPQYIKAE  429 (607)
T ss_dssp             EEEECSSCCCC
T ss_pred             EEEEecCccCC
Confidence            89999986543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.34  E-value=1.4e-12  Score=94.82  Aligned_cols=66  Identities=20%  Similarity=0.150  Sum_probs=52.0

Q ss_pred             EEEEece-eecCCCeeEecC-----CCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPF-----DKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~-----~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      .++++|+ ..|++.. +..+     .|++++|+||||||||||+++|+|++.|..|.+.+                 ...
T Consensus       287 ~l~~~~l~~~~~~~~-l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-----------------~~~  348 (538)
T 1yqt_A          287 LVTYPRLVKDYGSFR-LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-----------------DLT  348 (538)
T ss_dssp             EEEECCEEEEETTEE-EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-----------------CCC
T ss_pred             EEEEeeEEEEECCEE-EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-----------------Cce
Confidence            3677888 5676643 5443     28999999999999999999999999999998761                 124


Q ss_pred             EEEEEecCCC
Q psy16868         79 VEIVFDNTDH   88 (109)
Q Consensus        79 i~~~fq~~~~   88 (109)
                      |++++|++..
T Consensus       349 i~~v~Q~~~~  358 (538)
T 1yqt_A          349 VAYKPQYIKA  358 (538)
T ss_dssp             EEEECSSCCC
T ss_pred             EEEEecCCcC
Confidence            8999998754

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.30  E-value=5.4e-13  Score=105.01  Aligned_cols=78  Identities=18%  Similarity=0.263  Sum_probs=61.1

Q ss_pred             EEEEece-eecCCC---eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868          5 QVIIHGF-KSYKEQ---TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV   75 (109)
Q Consensus         5 ~i~i~n~-~~~~~~---~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (109)
                      .|+++|+ .+|.+.   .++++++     |+.++|+||+|||||||+++|.+++.|..|.+.+++.    .....+....
T Consensus      1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~----di~~i~~~~l 1151 (1321)
T 4f4c_A         1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGS----EIKTLNPEHT 1151 (1321)
T ss_dssp             CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTE----ETTTBCHHHH
T ss_pred             eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCE----EhhhCCHHHH
Confidence            4888998 678542   4577666     8999999999999999999999999999999986553    2223333344


Q ss_pred             eEEEEEEEecC
Q psy16868         76 NAYVEIVFDNT   86 (109)
Q Consensus        76 ~~~i~~~fq~~   86 (109)
                      +..|++|+|+|
T Consensus      1152 R~~i~~V~Qdp 1162 (1321)
T 4f4c_A         1152 RSQIAIVSQEP 1162 (1321)
T ss_dssp             HTTEEEECSSC
T ss_pred             HhheEEECCCC
Confidence            67799999987

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.29  E-value=3.7e-13  Score=105.72  Aligned_cols=79  Identities=14%  Similarity=0.190  Sum_probs=59.8

Q ss_pred             EEEEece-eecCC---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868          5 QVIIHGF-KSYKE---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV   75 (109)
Q Consensus         5 ~i~i~n~-~~~~~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (109)
                      .|+++|+ ..|.+   ..++++++     |+.++|+||||||||||+++|.+++.|..|.+.+++...    ........
T Consensus       387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i----~~~~~~~~  462 (1284)
T 3g5u_A          387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDI----RTINVRYL  462 (1284)
T ss_dssp             CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEG----GGSCHHHH
T ss_pred             eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEH----HhCCHHHH
Confidence            4788898 77854   24566665     899999999999999999999999999999988655321    11122233


Q ss_pred             eEEEEEEEecCC
Q psy16868         76 NAYVEIVFDNTD   87 (109)
Q Consensus        76 ~~~i~~~fq~~~   87 (109)
                      +..|++++|++.
T Consensus       463 r~~i~~v~Q~~~  474 (1284)
T 3g5u_A          463 REIIGVVSQEPV  474 (1284)
T ss_dssp             HHHEEEECSSCC
T ss_pred             HhheEEEcCCCc
Confidence            556999999873

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.28  E-value=6.3e-13  Score=104.43  Aligned_cols=78  Identities=18%  Similarity=0.229  Sum_probs=59.3

Q ss_pred             EEEEece-eecCCC---eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868          5 QVIIHGF-KSYKEQ---TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV   75 (109)
Q Consensus         5 ~i~i~n~-~~~~~~---~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (109)
                      .++++|+ ..|.+.   .++++++     |+.++|+||||||||||+++|.+++.|..|.+.+++...    ........
T Consensus      1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i----~~~~~~~~ 1105 (1284)
T 3g5u_A         1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEI----KQLNVQWL 1105 (1284)
T ss_dssp             CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCT----TSSCHHHH
T ss_pred             cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEc----ccCCHHHH
Confidence            4788888 677542   3566666     899999999999999999999999999999998655321    11222233


Q ss_pred             eEEEEEEEecC
Q psy16868         76 NAYVEIVFDNT   86 (109)
Q Consensus        76 ~~~i~~~fq~~   86 (109)
                      +..|++++|++
T Consensus      1106 r~~i~~v~Q~~ 1116 (1284)
T 3g5u_A         1106 RAQLGIVSQEP 1116 (1284)
T ss_dssp             TTSCEEEESSC
T ss_pred             HhceEEECCCC
Confidence            56799999997

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.26  E-value=3.3e-13  Score=84.26  Aligned_cols=35  Identities=11%  Similarity=0.146  Sum_probs=31.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD   60 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~   60 (109)
                      +++++|+||||||||||+++|++++ |..|.+...+
T Consensus        33 Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g   67 (158)
T 1htw_A           33 AIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPT   67 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECC
Confidence            7899999999999999999999999 8888877444

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.23  E-value=7.2e-12  Score=90.06  Aligned_cols=56  Identities=21%  Similarity=0.358  Sum_probs=41.7

Q ss_pred             eEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccch
Q psy16868          4 KQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDS   61 (109)
Q Consensus         4 ~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~   61 (109)
                      .++.+.|+..+.+.. + .+..++++|+|||||||||||++|+|++.|..|.+.+.+.
T Consensus        10 ~~l~~~~~~~l~~vs-l-~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~   65 (483)
T 3euj_A           10 RSLTLINWNGFFART-F-DFDELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNT   65 (483)
T ss_dssp             EEEEEEEETTEEEEE-E-ECCSSEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCT
T ss_pred             eEEEEeccccccceE-E-EEccceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCE
Confidence            345555553344333 3 3334899999999999999999999999999999886553

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.22  E-value=2.1e-12  Score=101.77  Aligned_cols=78  Identities=12%  Similarity=0.170  Sum_probs=60.0

Q ss_pred             EEEEece-eecCC---CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868          5 QVIIHGF-KSYKE---QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV   75 (109)
Q Consensus         5 ~i~i~n~-~~~~~---~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (109)
                      .|+++|. .+|..   ..++++++     |+.++|+||+|||||||+++|.+.+.|..|.+..++.    .....+....
T Consensus       415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~----~i~~~~~~~l  490 (1321)
T 4f4c_A          415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGV----DVRDINLEFL  490 (1321)
T ss_dssp             CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTE----ETTTSCHHHH
T ss_pred             cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCc----cchhccHHHH
Confidence            4788888 67743   34566665     8999999999999999999999999999999885543    1222233334


Q ss_pred             eEEEEEEEecC
Q psy16868         76 NAYVEIVFDNT   86 (109)
Q Consensus        76 ~~~i~~~fq~~   86 (109)
                      +..|++|+|++
T Consensus       491 r~~i~~v~Q~~  501 (1321)
T 4f4c_A          491 RKNVAVVSQEP  501 (1321)
T ss_dssp             HHHEEEECSSC
T ss_pred             hhcccccCCcc
Confidence            56799999987

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.21  E-value=8.3e-12  Score=83.86  Aligned_cols=54  Identities=19%  Similarity=0.224  Sum_probs=31.1

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD   87 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~   87 (109)
                      .++|+||||||||||+++|+++..+..|.+.+.+..   +    ........+++++|.+.
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~---i----~~~~~~~~i~~v~q~~~   57 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEK---I----PKTVEIKAIGHVIEEGG   57 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC---------------C----CCCCSCCEEEESCC---
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcc---c----CcceeeeeeEEEeecCC
Confidence            368999999999999999999999999987744321   1    11122467899998753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.17  E-value=1.7e-11  Score=89.22  Aligned_cols=52  Identities=15%  Similarity=0.155  Sum_probs=42.7

Q ss_pred             EEEEece-eecCCCeeEecC-----CCCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868          5 QVIIHGF-KSYKEQTVVEPF-----DKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~-----~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      .+++.|+ +.|++.. +...     .|++++|+||||||||||+++|+|++.|..|.+.
T Consensus       269 ~l~~~~l~~~~~~~~-l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~  326 (538)
T 3ozx_A          269 KMKWTKIIKKLGDFQ-LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVT  326 (538)
T ss_dssp             EEEECCEEEEETTEE-EEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEE
T ss_pred             eEEEcceEEEECCEE-EEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            4677787 6777654 4332     2899999999999999999999999999999876

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.16  E-value=2.1e-11  Score=88.68  Aligned_cols=48  Identities=21%  Similarity=0.130  Sum_probs=39.6

Q ss_pred             ece-eecCCC-eeEecCC----CCceEEEecCCCCcchHHHHHHHhhccCcccc
Q psy16868          9 HGF-KSYKEQ-TVVEPFD----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSL   56 (109)
Q Consensus         9 ~n~-~~~~~~-~~l~~~~----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~   56 (109)
                      +|+ +.|... .++.+++    |++++|+||||||||||+++|+|++.|..|.+
T Consensus        25 ~~ls~~yg~~~~~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~   78 (538)
T 1yqt_A           25 EDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGD   78 (538)
T ss_dssp             CCEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred             cCcEEEECCccccccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcc
Confidence            366 677664 2566663    78999999999999999999999999988874

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.16  E-value=1.8e-11  Score=90.24  Aligned_cols=48  Identities=19%  Similarity=0.143  Sum_probs=40.5

Q ss_pred             ece-eecCCCe-eEecCC----CCceEEEecCCCCcchHHHHHHHhhccCcccc
Q psy16868          9 HGF-KSYKEQT-VVEPFD----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSL   56 (109)
Q Consensus         9 ~n~-~~~~~~~-~l~~~~----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~   56 (109)
                      +|+ +.|+... ++.+++    |++++|+||||||||||+++|+|++.|..|.+
T Consensus        95 ~~ls~~yg~~~~~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~  148 (607)
T 3bk7_A           95 EDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCED  148 (607)
T ss_dssp             GSEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTT
T ss_pred             CCeEEEECCCCeeeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCcc
Confidence            677 7787652 566664    78999999999999999999999999988884

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.14  E-value=6.8e-12  Score=96.24  Aligned_cols=54  Identities=20%  Similarity=0.289  Sum_probs=45.2

Q ss_pred             EEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCccccccc
Q psy16868          6 VIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHS   59 (109)
Q Consensus         6 i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~   59 (109)
                      |+++|+ +.|..  ..++++++     |++++|+||||||||||+++|+|++.|..|.+.+.
T Consensus       672 L~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~  733 (986)
T 2iw3_A          672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTH  733 (986)
T ss_dssp             EEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEEC
T ss_pred             EEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEc
Confidence            788898 67854  34466655     89999999999999999999999999999988743

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.12  E-value=8.1e-12  Score=81.33  Aligned_cols=31  Identities=16%  Similarity=0.184  Sum_probs=27.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRH   58 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~   58 (109)
                      +++++|+||||||||||+++|++++ +  |.+.+
T Consensus        23 G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~   53 (218)
T 1z6g_A           23 IYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF   53 (218)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE
Confidence            7899999999999999999999988 4  66653

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.08  E-value=3.9e-11  Score=76.80  Aligned_cols=56  Identities=20%  Similarity=0.173  Sum_probs=40.5

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecCCC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTDH   88 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~~   88 (109)
                      ++.++|+||||||||||+++|++++. ..| +.+.+...    .  ........+++++|+..+
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~----~--~~~~~~~~ig~~~~~~~g   56 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYT----E--EVRQGGRRIGFDVVTLSG   56 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEEC----C--EEETTSSEEEEEEEETTS
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEec----c--hhHhhhceEEEEEEeccc
Confidence            47899999999999999999999998 777 66443211    1  111124678899988633

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.07  E-value=1.6e-10  Score=85.15  Aligned_cols=32  Identities=22%  Similarity=0.142  Sum_probs=30.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSL   56 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~   56 (109)
                      |++++|+|||||||||||++|+|++.|..|.+
T Consensus       103 Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i  134 (608)
T 3j16_B          103 GQVLGLVGTNGIGKSTALKILAGKQKPNLGRF  134 (608)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence            89999999999999999999999999999987

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.04  E-value=2.7e-11  Score=79.11  Aligned_cols=33  Identities=21%  Similarity=0.218  Sum_probs=28.2

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhcc--Cccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSD--ESTSLR   57 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~--~~~~~~   57 (109)
                      |++++|+||||||||||+++|++.+++  ..+.+.
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~   50 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVS   50 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEE
Confidence            789999999999999999999999875  344443

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.02  E-value=6.4e-11  Score=86.21  Aligned_cols=32  Identities=19%  Similarity=0.177  Sum_probs=30.7

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSL   56 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~   56 (109)
                      |++++|+||||||||||+++|+|++.|..|.+
T Consensus        25 Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i   56 (538)
T 3ozx_A           25 NTILGVLGKNGVGKTTVLKILAGEIIPNFGDP   56 (538)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence            78999999999999999999999999999986

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.00  E-value=1.3e-10  Score=74.75  Aligned_cols=26  Identities=23%  Similarity=0.275  Sum_probs=24.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      |++++|+||||||||||+++|++++.
T Consensus        20 Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           20 GRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            78999999999999999999999985

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.00  E-value=1.4e-10  Score=82.57  Aligned_cols=62  Identities=15%  Similarity=0.106  Sum_probs=44.1

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccchh----hhhhhcCCCCceeeEEEEEEEecC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSR----QALLHEGTGPRVVNAYVEIVFDNT   86 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~fq~~   86 (109)
                      |+.++|+||||||||||+++|+++..+..|.+...+..    .++.............|.+++|+.
T Consensus       157 Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~  222 (438)
T 2dpy_A          157 GQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPAD  222 (438)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCC
Confidence            88999999999999999999999999998887755431    111111111112356799999864

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.98  E-value=2.2e-10  Score=78.36  Aligned_cols=30  Identities=23%  Similarity=0.066  Sum_probs=27.1

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDEST   54 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~   54 (109)
                      +++++|+||||||||||+++|++++.+..|
T Consensus        90 g~ivgI~G~sGsGKSTL~~~L~gll~~~~G  119 (312)
T 3aez_A           90 PFIIGVAGSVAVGKSTTARVLQALLARWDH  119 (312)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred             CEEEEEECCCCchHHHHHHHHHhhccccCC
Confidence            679999999999999999999999987543

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.97  E-value=1.1e-10  Score=79.45  Aligned_cols=59  Identities=17%  Similarity=0.168  Sum_probs=36.5

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccc---cchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRH---SDSRQALLHEGTGPRVVNAYVEIVFDNTD   87 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~fq~~~   87 (109)
                      +++++|+||||||||||+++|+++..+..|.+..   .+.  + +..... ......++++||.|.
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~--~-~t~~~~-~~~~~~~g~v~q~p~  230 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGR--H-TTTTAQ-LLKFDFGGYVVDTPG  230 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCC-EEECTTSCEEESSCS
T ss_pred             CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCC--C-ceeeeE-EEEcCCCCEEEECcC
Confidence            7899999999999999999999999999998874   221  1 111111 111124789999875

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.97  E-value=3.3e-10  Score=78.84  Aligned_cols=56  Identities=21%  Similarity=0.243  Sum_probs=40.1

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEE-ecC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVF-DNT   86 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f-q~~   86 (109)
                      ++.++|+||||||||||+++|.+++.+..|.+.+.+. ..+     .....+..+++++ |.+
T Consensus       175 G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~-~e~-----~~~~~~~~v~~v~~q~~  231 (361)
T 2gza_A          175 ERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV-PEL-----FLPDHPNHVHLFYPSEA  231 (361)
T ss_dssp             TCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS-SCC-----CCTTCSSEEEEECC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc-ccc-----CccccCCEEEEeecCcc
Confidence            7899999999999999999999999998898874432 111     1111245688888 654

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.93  E-value=2.1e-10  Score=76.71  Aligned_cols=36  Identities=22%  Similarity=0.222  Sum_probs=31.7

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccC-cccccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDE-STSLRHSD   60 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~-~~~~~~~~   60 (109)
                      +++++|+||||||||||+++|.+++.+. .|.+...+
T Consensus        25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g   61 (261)
T 2eyu_A           25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE   61 (261)
T ss_dssp             SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcC
Confidence            7899999999999999999999999887 78876443

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.93  E-value=1.6e-10  Score=85.10  Aligned_cols=62  Identities=18%  Similarity=0.025  Sum_probs=36.2

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhcc-CcccccccchhhhhhhcCCCCceeeEEEEEEEecCC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSD-ESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNTD   87 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~~   87 (109)
                      -..++|+||||||||||+++|+|++.| ..|.+.+.+...... ........+..|+++||++.
T Consensus        45 lp~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~-~~~~~~~~~~~i~~v~Q~~~  107 (608)
T 3szr_A           45 LPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLK-KLVNEDKWRGKVSYQDYEIE  107 (608)
T ss_dssp             CCCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEE-ECSSSSCCEEEESCC---CC
T ss_pred             CCeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEe-cCCccccceeEEeeeccccc
Confidence            356999999999999999999999877 688887554321111 11112234678999998753

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.92  E-value=7.8e-10  Score=85.03  Aligned_cols=43  Identities=26%  Similarity=0.376  Sum_probs=35.6

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHH
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~   47 (109)
                      .+...|+ +.|++..++++++     |++++|+||||||||||+++|++
T Consensus       435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4555677 7787776676665     89999999999999999999995

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.91  E-value=4.1e-10  Score=76.63  Aligned_cols=62  Identities=16%  Similarity=0.170  Sum_probs=39.5

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee-EEEEEEEecCCCC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN-AYVEIVFDNTDHR   89 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~fq~~~~~   89 (109)
                      +.+++|+||||+|||||+++|. .+.+..|.+........-...  ...... ..+++++|.|.-.
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~--~~~~~~~~~~g~v~d~pg~~  227 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTT--GVRLIPFGKGSFVGDTPGFS  227 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCC--CEEEEEETTTEEEESSCCCS
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCcee--eEEEEEcCCCcEEEECcCcC
Confidence            7899999999999999999999 888999998741100000100  011111 1478999988543

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.90  E-value=6.9e-10  Score=69.59  Aligned_cols=33  Identities=30%  Similarity=0.389  Sum_probs=28.4

Q ss_pred             CCceEEEecCCCCcchHHH------------HHHHhhccCccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFF------------AIQFVLSDESTSLR   57 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~------------al~~~l~~~~~~~~   57 (109)
                      +++++|+||||||||||++            .+.+++.+..+...
T Consensus         9 gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~   53 (171)
T 4gp7_A            9 LSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQT   53 (171)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchh
Confidence            7899999999999999999            78888877766544

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.90  E-value=1e-10  Score=82.90  Aligned_cols=35  Identities=26%  Similarity=0.285  Sum_probs=31.3

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCccccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHS   59 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~   59 (109)
                      +++++|+|||||||||||++|.+.+.+..|.+...
T Consensus       167 ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~  201 (418)
T 1p9r_A          167 HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTV  201 (418)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe
Confidence            67899999999999999999999999888877643

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.89  E-value=1.2e-10  Score=80.29  Aligned_cols=36  Identities=19%  Similarity=0.158  Sum_probs=31.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD   60 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~   60 (109)
                      +++++|+|+||||||||+++|.+++.+..|.+.+.+
T Consensus        55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~   90 (337)
T 2qm8_A           55 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA   90 (337)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence            679999999999999999999999998888776443

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.88  E-value=5.3e-10  Score=76.96  Aligned_cols=36  Identities=25%  Similarity=0.443  Sum_probs=33.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD   60 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~   60 (109)
                      ++.++|+||||||||||+++|++++.+..|.+.+.+
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~  206 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED  206 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEES
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECC
Confidence            789999999999999999999999999989887544

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=98.88  E-value=4.4e-10  Score=80.48  Aligned_cols=35  Identities=17%  Similarity=0.140  Sum_probs=31.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcc-c-cccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDEST-S-LRHS   59 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~-~-~~~~   59 (109)
                      |++++|+||||||||||+++|++++.+..| . +.++
T Consensus       138 Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vd  174 (460)
T 2npi_A          138 GPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYIN  174 (460)
T ss_dssp             CCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEc
Confidence            899999999999999999999999998888 7 6643

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.88  E-value=7.9e-10  Score=75.38  Aligned_cols=36  Identities=22%  Similarity=0.255  Sum_probs=32.5

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD   60 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~   60 (109)
                      +++++|+|||||||||++..|++++.+..|.+.+.+
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g  137 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA  137 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence            679999999999999999999999999888877544

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.88  E-value=7.5e-10  Score=70.59  Aligned_cols=26  Identities=19%  Similarity=0.322  Sum_probs=24.1

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      |++++|+||||||||||+++|+++++
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            68999999999999999999999863

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.88  E-value=6e-10  Score=75.92  Aligned_cols=36  Identities=25%  Similarity=0.329  Sum_probs=32.3

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD   60 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~   60 (109)
                      +++++|+|||||||||+++.|++++.+..|.+.+.+
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g  135 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA  135 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            789999999999999999999999998888877443

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.87  E-value=1.1e-09  Score=70.15  Aligned_cols=26  Identities=31%  Similarity=0.362  Sum_probs=23.4

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +..++|+||||||||||+++|.+++.
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            57899999999999999999999875

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.87  E-value=8.2e-10  Score=71.10  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=28.2

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhcc---Cccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSD---ESTSLR   57 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~---~~~~~~   57 (109)
                      +++++|+||||||||||+++|++++.+   ..+.+.
T Consensus        22 g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~   57 (208)
T 3c8u_A           22 RQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVP   57 (208)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEe
Confidence            679999999999999999999999985   345444

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.85  E-value=8.5e-10  Score=81.34  Aligned_cols=31  Identities=23%  Similarity=0.367  Sum_probs=28.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTS   55 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~   55 (109)
                      +++++|+||||||||||+++|+|++.|..|.
T Consensus       378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~  408 (608)
T 3j16_B          378 SEILVMMGENGTGKTTLIKLLAGALKPDEGQ  408 (608)
T ss_dssp             TCEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred             ceEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence            4789999999999999999999999998885

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.85  E-value=9e-10  Score=78.16  Aligned_cols=43  Identities=19%  Similarity=0.212  Sum_probs=30.0

Q ss_pred             EEEeceeecCCCeeEecCC-----CCc--eEEEecCCCCcchHHHHHHHhh
Q psy16868          6 VIIHGFKSYKEQTVVEPFD-----KRH--NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus         6 i~i~n~~~~~~~~~l~~~~-----~~~--~~i~G~NG~GKStll~al~~~l   49 (109)
                      +++.+-+.|+... +.+++     |++  ++|+||||||||||+++|+|+.
T Consensus        17 l~~~~~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           17 VPLAGHVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             CCCCCCC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             EEEeeEEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            3444444565543 44433     778  9999999999999999999884

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.84  E-value=1.2e-09  Score=77.30  Aligned_cols=33  Identities=27%  Similarity=0.445  Sum_probs=30.4

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhccCccccccc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHS   59 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~   59 (109)
                      +++|+||||||||||+++|+|++.+..|.+...
T Consensus        71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~  103 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTG  103 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCccCceEEEC
Confidence            999999999999999999999999999987633

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.83  E-value=1.2e-09  Score=69.15  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=22.3

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .++|+||||||||||+++|++++.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999999985

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.82  E-value=1.9e-09  Score=70.31  Aligned_cols=25  Identities=16%  Similarity=0.048  Sum_probs=17.4

Q ss_pred             CCceEEEecCCCCcchHHHHHH-Hhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQ-FVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~-~~l   49 (109)
                      +++++|+||||||||||+++|+ +++
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            7899999999999999999999 987

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.81  E-value=1.4e-09  Score=71.62  Aligned_cols=25  Identities=32%  Similarity=0.159  Sum_probs=23.4

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +.+++|+||||||||||+++|++++
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999999999976

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.81  E-value=2.1e-09  Score=73.22  Aligned_cols=34  Identities=24%  Similarity=0.171  Sum_probs=30.3

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc--cCcccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS--DESTSLRH   58 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~--~~~~~~~~   58 (109)
                      +.+++|+|+||||||||+++|++++.  +..|.+.+
T Consensus        80 g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~v  115 (308)
T 1sq5_A           80 PYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL  115 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEE
Confidence            57999999999999999999999988  77777664

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.80  E-value=2e-09  Score=73.45  Aligned_cols=30  Identities=23%  Similarity=0.271  Sum_probs=27.1

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      |++++|+||||||||||+++|++++   .|.+.
T Consensus       126 Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~  155 (305)
T 2v9p_A          126 KNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL  155 (305)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHH---TCEEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHhhhc---CceEE
Confidence            8899999999999999999999998   56654

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.80  E-value=1.5e-09  Score=75.52  Aligned_cols=36  Identities=25%  Similarity=0.329  Sum_probs=32.2

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD   60 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~   60 (109)
                      +++++|+|||||||||++..|++++.+..|.+.+.+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g  192 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA  192 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence            789999999999999999999999998888876443

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.79  E-value=2.3e-09  Score=69.27  Aligned_cols=27  Identities=22%  Similarity=0.347  Sum_probs=24.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      +++++|+||||||||||+++|++.+.+
T Consensus        25 G~~~~l~G~nGsGKSTll~~l~g~~~~   51 (231)
T 4a74_A           25 QAITEVFGEFGSGKTQLAHTLAVMVQL   51 (231)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            789999999999999999999996654

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.79  E-value=1.7e-09  Score=74.49  Aligned_cols=36  Identities=25%  Similarity=0.226  Sum_probs=32.3

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD   60 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~   60 (109)
                      +++++|+|||||||||++..|++++.+..|.+.+.+
T Consensus       129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g  164 (328)
T 3e70_C          129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAA  164 (328)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence            689999999999999999999999999888876443

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.79  E-value=2.2e-09  Score=68.85  Aligned_cols=27  Identities=22%  Similarity=0.223  Sum_probs=24.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      +.+++|+||||||||||+++|++++.+
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~   32 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALARTLGE   32 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHGG
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            578999999999999999999998764

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.79  E-value=4.9e-10  Score=76.54  Aligned_cols=34  Identities=26%  Similarity=0.416  Sum_probs=22.4

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRH   58 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~   58 (109)
                      +++++|+|+||+|||||+++|.+.+.+..|.+..
T Consensus       173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~  206 (307)
T 1t9h_A          173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE  206 (307)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred             CCEEEEECCCCCCHHHHHHHhcccccccccceee
Confidence            7899999999999999999999999988888763

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.78  E-value=2.9e-09  Score=67.11  Aligned_cols=28  Identities=14%  Similarity=0.237  Sum_probs=25.2

Q ss_pred             CCCCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         23 FDKRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        23 ~~~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +.+.+++|+||||||||||+++|.+.+.
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4578999999999999999999999875

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.78  E-value=2.2e-09  Score=67.74  Aligned_cols=24  Identities=29%  Similarity=0.317  Sum_probs=22.7

Q ss_pred             CCceEEEecCCCCcchHHHHHHHh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~   48 (109)
                      +++++|+||||||||||+++|++.
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            678999999999999999999987

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.77  E-value=2.2e-09  Score=74.69  Aligned_cols=33  Identities=21%  Similarity=0.315  Sum_probs=28.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc-cCccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS-DESTSLR   57 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~-~~~~~~~   57 (109)
                      +++++|+||||+|||||+++|.+.+. +..|.+.
T Consensus       215 G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~  248 (358)
T 2rcn_A          215 GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVS  248 (358)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---
T ss_pred             CCEEEEECCCCccHHHHHHHHhccccccccCCcc
Confidence            78999999999999999999999998 8888876

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.75  E-value=3.2e-09  Score=73.58  Aligned_cols=36  Identities=19%  Similarity=0.092  Sum_probs=32.1

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD   60 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~   60 (109)
                      |+.++|+||||||||||+++|+++..+..|.+...+
T Consensus        71 Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G  106 (347)
T 2obl_A           71 GQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIG  106 (347)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEES
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEec
Confidence            899999999999999999999999998888765433

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.73  E-value=4.9e-09  Score=71.26  Aligned_cols=42  Identities=26%  Similarity=0.396  Sum_probs=20.2

Q ss_pred             eecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHh-hccCcc
Q psy16868         12 KSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFV-LSDEST   54 (109)
Q Consensus        12 ~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~-l~~~~~   54 (109)
                      +.|....++.+++ =.++|+|+||+|||||+++|.+. +.+..|
T Consensus         6 ~~~~~~~~l~~~~-~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g   48 (301)
T 2qnr_A            6 NQVHRKSVKKGFE-FTLMVVGESGLGKSTLINSLFLTDLYPERV   48 (301)
T ss_dssp             ------------C-EEEEEEEETTSSHHHHHHHHHC--------
T ss_pred             ceECCEEEEcCCC-EEEEEECCCCCCHHHHHHHHhCCCccCCCC
Confidence            4566655565555 33489999999999999999987 677666

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.73  E-value=3.4e-09  Score=76.45  Aligned_cols=35  Identities=20%  Similarity=0.210  Sum_probs=31.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCccccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHS   59 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~   59 (109)
                      +.+++|+|+||||||||++.|++++.+..|.+.+.
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~  327 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA  327 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence            67999999999999999999999999888887743

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.72  E-value=2.6e-09  Score=74.21  Aligned_cols=33  Identities=21%  Similarity=0.241  Sum_probs=29.5

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCc----cccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDES----TSLR   57 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~----~~~~   57 (109)
                      ++.++|+||||||||||+++|++++.+..    |.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~  206 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREF  206 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHH
Confidence            57899999999999999999999999877    6654

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.70  E-value=2.5e-09  Score=70.39  Aligned_cols=33  Identities=24%  Similarity=0.206  Sum_probs=28.4

Q ss_pred             CCceEEEecCCCCcchHHHHHH---HhhccCccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQ---FVLSDESTSLR   57 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~---~~l~~~~~~~~   57 (109)
                      +.+++|+||||||||||+++|+   ++..+..|.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~   62 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFL   62 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHH
Confidence            5789999999999999999999   87777666554

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.69  E-value=6.5e-09  Score=75.32  Aligned_cols=35  Identities=26%  Similarity=0.384  Sum_probs=31.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCccccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHS   59 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~   59 (109)
                      +..++|+|||||||||++++|++++.+..+.+...
T Consensus       260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitie  294 (511)
T 2oap_1          260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIE  294 (511)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEc
Confidence            67899999999999999999999999888876633

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.68  E-value=1.2e-09  Score=69.80  Aligned_cols=50  Identities=12%  Similarity=0.056  Sum_probs=27.6

Q ss_pred             EEEece-eecCCCeeEecCC---CCceEEEecCCCCcchHHHHHHHhh-----ccCcccc
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD---KRHNVVVGRNGSGKSNFFFAIQFVL-----SDESTSL   56 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~---~~~~~i~G~NG~GKStll~al~~~l-----~~~~~~~   56 (109)
                      |+++|+ +.|.. .++.+++   +..++|+|+||+|||||+++|.+..     .+..|..
T Consensus         4 l~~~~~~~~~~~-~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~   62 (210)
T 1pui_A            4 LNYQQTHFVMSA-PDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRT   62 (210)
T ss_dssp             -------CEEEE-SSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------
T ss_pred             hhhhhhhheeec-CCHhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccc
Confidence            677777 56643 2243444   5679999999999999999999877     4555543

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.67  E-value=4.9e-09  Score=73.21  Aligned_cols=33  Identities=24%  Similarity=0.236  Sum_probs=29.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccC-ccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDE-STSLR   57 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~-~~~~~   57 (109)
                      +++++|+|||||||||++++|.+++.+. .|.+.
T Consensus       136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~  169 (372)
T 2ewv_A          136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHII  169 (372)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEE
Confidence            6789999999999999999999999876 67764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.66  E-value=5.3e-09  Score=72.71  Aligned_cols=32  Identities=28%  Similarity=0.344  Sum_probs=28.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccC-cccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDE-STSL   56 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~-~~~~   56 (109)
                      +++++|+||||||||||+++|.+++.+. .+.+
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i  155 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHI  155 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEE
Confidence            6799999999999999999999999876 4544

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=98.65  E-value=3.7e-09  Score=66.62  Aligned_cols=35  Identities=17%  Similarity=0.293  Sum_probs=29.4

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhccC---cccccccc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSDE---STSLRHSD   60 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~~---~~~~~~~~   60 (109)
                      +.++|+|+||||||||+++|.+++.+.   .|.+.+++
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg   40 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA   40 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence            468999999999999999999999987   67777543

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.65  E-value=1e-08  Score=65.27  Aligned_cols=30  Identities=23%  Similarity=0.058  Sum_probs=26.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDEST   54 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~   54 (109)
                      +.+++|+|||||||||++++|++.+.+..+
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~   35 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDPSTSYK   35 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence            678999999999999999999998855433

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.65  E-value=1e-08  Score=74.31  Aligned_cols=36  Identities=19%  Similarity=0.281  Sum_probs=31.2

Q ss_pred             CCceEEEecCCCCcchHHHH--HHHhhccCcccccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFA--IQFVLSDESTSLRHSD   60 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~a--l~~~l~~~~~~~~~~~   60 (109)
                      |++++|+||||||||||+++  ++|++.+..|.+.+.+
T Consensus        39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g   76 (525)
T 1tf7_A           39 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF   76 (525)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence            78999999999999999999  6899987778776443

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.64  E-value=5.9e-09  Score=73.86  Aligned_cols=48  Identities=21%  Similarity=0.230  Sum_probs=33.8

Q ss_pred             EEEEece-eecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCc
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDES   53 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~   53 (109)
                      .|.+.|+ +.|....++.+++ =-++|+|+||+|||||+++|++...+..
T Consensus        11 ~l~~~~l~~~y~~~~vl~~vs-f~I~lvG~sGaGKSTLln~L~g~~~~~~   59 (418)
T 2qag_C           11 YVGFANLPNQVYRKSVKRGFE-FTLMVVGESGLGKSTLINSLFLTDLYSP   59 (418)
T ss_dssp             ----CCCCCCTTTTTCC-CCC-EEEEEECCTTSSHHHHHHHHTTCCCCCC
T ss_pred             cEEEEecceeECCEEEecCCC-EEEEEECCCCCcHHHHHHHHhCCCCCCC
Confidence            3677888 7787666565655 2359999999999999999999876433

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.63  E-value=1.3e-08  Score=64.96  Aligned_cols=25  Identities=36%  Similarity=0.499  Sum_probs=23.5

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +.+++|+|+||||||||+++|++.+
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhh
Confidence            6799999999999999999999876

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.62  E-value=7.3e-09  Score=76.98  Aligned_cols=32  Identities=22%  Similarity=0.288  Sum_probs=20.6

Q ss_pred             CCceEEEecCCCCcchHH---------------------HHHHHhhccCcccc
Q psy16868         25 KRHNVVVGRNGSGKSNFF---------------------FAIQFVLSDESTSL   56 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll---------------------~al~~~l~~~~~~~   56 (109)
                      +++++|+||||||||||+                     +.+.++..+..+.+
T Consensus        44 Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i   96 (670)
T 3ux8_A           44 GKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAI   96 (670)
T ss_dssp             TSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEE
T ss_pred             CCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccce
Confidence            899999999999999998                     77777776664433

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.60  E-value=1.9e-08  Score=64.73  Aligned_cols=27  Identities=22%  Similarity=0.085  Sum_probs=24.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      +.+++|+||||||||||+++|+..+.+
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            678999999999999999999998764

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.58  E-value=1.2e-08  Score=64.00  Aligned_cols=30  Identities=20%  Similarity=0.278  Sum_probs=26.3

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDEST   54 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~   54 (109)
                      ++.++|+||||+|||||+++|++.+.+..|
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g   67 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKG   67 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence            678999999999999999999999874444

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.58  E-value=2.1e-08  Score=68.61  Aligned_cols=34  Identities=18%  Similarity=0.194  Sum_probs=28.4

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh--------ccCccccccc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL--------SDESTSLRHS   59 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l--------~~~~~~~~~~   59 (109)
                      ++++|+|+||||||||++.|.+..        .+..|.+.++
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~id   46 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVD   46 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEE
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCcc
Confidence            478999999999999999999986        5677776643

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.58  E-value=1.6e-08  Score=64.57  Aligned_cols=30  Identities=30%  Similarity=0.290  Sum_probs=26.1

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTS   55 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~   55 (109)
                      +.+++|+|+|||||||++++|++.+. ..|.
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~   54 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQMLY-QKGK   54 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH-HTTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH-hcCc
Confidence            68999999999999999999999886 3343

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.57  E-value=1.6e-08  Score=63.85  Aligned_cols=23  Identities=22%  Similarity=0.306  Sum_probs=20.8

Q ss_pred             CceEEEecCCCCcchHHHHHHHh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~   48 (109)
                      ++++|+||||||||||+++|+..
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~   25 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQ   25 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhcc
Confidence            57899999999999999999873

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.57  E-value=1e-08  Score=67.90  Aligned_cols=33  Identities=21%  Similarity=0.145  Sum_probs=28.6

Q ss_pred             CCceEEEecCCCCcchHHHHHH---HhhccCccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQ---FVLSDESTSLR   57 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~---~~l~~~~~~~~   57 (109)
                      +.+++|+|||||||||++++|+   ++..+..|.+.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~   62 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY   62 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence            5789999999999999999999   77777777654

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.56  E-value=3.3e-08  Score=61.38  Aligned_cols=26  Identities=35%  Similarity=0.400  Sum_probs=23.4

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +.+++|+|+|||||||++++|+..+.
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            46789999999999999999999865

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.56  E-value=3.6e-08  Score=60.63  Aligned_cols=28  Identities=25%  Similarity=0.270  Sum_probs=25.8

Q ss_pred             CCCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         24 DKRHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        24 ~~~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      .++.++|+||||+|||||+++|++.+.+
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~   62 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALE   62 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5788999999999999999999998875

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.55  E-value=3.1e-08  Score=66.71  Aligned_cols=30  Identities=20%  Similarity=0.189  Sum_probs=27.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDEST   54 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~   54 (109)
                      |++++|+||||+|||||+..|++.+.+..|
T Consensus        35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G   64 (296)
T 1cr0_A           35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMG   64 (296)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHHHTSC
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHHHcC
Confidence            789999999999999999999999987755

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.52  E-value=3.2e-08  Score=63.78  Aligned_cols=32  Identities=16%  Similarity=0.138  Sum_probs=27.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSL   56 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~   56 (109)
                      +++++|+||||||||||+..|++.+.+..+.+
T Consensus        23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v   54 (235)
T 2w0m_A           23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPC   54 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCE
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeE
Confidence            68999999999999999999998776544443

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.51  E-value=4.1e-08  Score=62.79  Aligned_cols=32  Identities=19%  Similarity=0.205  Sum_probs=27.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSL   56 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~   56 (109)
                      +.+++|+|+|||||||++++|.+.+.+..+.+
T Consensus        22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v   53 (201)
T 1rz3_A           22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISV   53 (201)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeE
Confidence            56899999999999999999999886554443

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.49  E-value=6e-08  Score=62.37  Aligned_cols=29  Identities=21%  Similarity=0.239  Sum_probs=25.7

Q ss_pred             cCCCCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         22 PFDKRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        22 ~~~~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .+.+.+++|+||||||||||+++|.....
T Consensus        16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           16 FQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            45588999999999999999999998764

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.45  E-value=6.4e-08  Score=73.07  Aligned_cols=31  Identities=23%  Similarity=0.319  Sum_probs=27.2

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc-cCccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS-DESTS   55 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~-~~~~~   55 (109)
                      +++++|+|||||||||+|++|+++.. +..|.
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~  607 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTALIALLAQVGS  607 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTC
T ss_pred             CcEEEEECCCCCChHHHHHHHHhhhhhcccCc
Confidence            78999999999999999999999874 55554

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.44  E-value=7.4e-08  Score=59.99  Aligned_cols=25  Identities=32%  Similarity=0.410  Sum_probs=22.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +.+++|+|+|||||||++++|+..+
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence            5789999999999999999999875

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.44  E-value=9.8e-08  Score=65.54  Aligned_cols=24  Identities=25%  Similarity=0.182  Sum_probs=23.0

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +++|+||||||||||+++|.+++.
T Consensus        94 iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            799999999999999999999986

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.43  E-value=1e-07  Score=73.85  Aligned_cols=25  Identities=28%  Similarity=0.262  Sum_probs=22.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +++++|+|||||||||+|++| |++.
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i-Gl~~  813 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA-GLLA  813 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred             CcEEEEECCCCCChHHHHHHH-HHHH
Confidence            479999999999999999999 7765

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.37  E-value=1.4e-07  Score=64.69  Aligned_cols=31  Identities=26%  Similarity=0.327  Sum_probs=26.1

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh----ccCcccc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL----SDESTSL   56 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l----~~~~~~~   56 (109)
                      +.++|+||||+|||||+++|++.+    .+..|.+
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~   86 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPV   86 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTT
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechH
Confidence            678999999999999999999998    4444544

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.37  E-value=1.5e-07  Score=63.11  Aligned_cols=24  Identities=21%  Similarity=0.173  Sum_probs=22.5

Q ss_pred             eEEEecCCCCcchHHHHHHHhhcc
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      ++|+||||||||||+++|++.+.+
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~   70 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGL   70 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCC
Confidence            899999999999999999998765

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.36  E-value=7e-08  Score=62.97  Aligned_cols=24  Identities=21%  Similarity=0.319  Sum_probs=22.7

Q ss_pred             CCceEEEecCCCCcchHHHHHHHh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~   48 (109)
                      +.+++|.|+|||||||++++|++.
T Consensus        20 g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           20 PFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            679999999999999999999887

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.35  E-value=1.6e-07  Score=71.18  Aligned_cols=26  Identities=23%  Similarity=0.418  Sum_probs=23.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +++++|+|||||||||+|++|+++..
T Consensus       607 g~i~~ItGpNGsGKSTlLr~iagl~~  632 (800)
T 1wb9_A          607 RRMLIITGPNMGGKSTYMRQTALIAL  632 (800)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHHHHH
Confidence            67999999999999999999999753

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.35  E-value=1.1e-07  Score=69.55  Aligned_cols=30  Identities=23%  Similarity=0.210  Sum_probs=27.3

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDEST   54 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~   54 (109)
                      +.+++|+|+||||||||+++|++.+.+..|
T Consensus       369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G  398 (552)
T 3cr8_A          369 GFTVFFTGLSGAGKSTLARALAARLMEMGG  398 (552)
T ss_dssp             CEEEEEEESSCHHHHHHHHHHHHHHHTTCS
T ss_pred             ceEEEEECCCCChHHHHHHHHHHhhcccCC
Confidence            678999999999999999999999987665

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.34  E-value=5.3e-08  Score=72.38  Aligned_cols=22  Identities=32%  Similarity=0.413  Sum_probs=20.3

Q ss_pred             CCceEEEecCCCCcchHHHHHH
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQ   46 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~   46 (109)
                      +++++|+||||||||||+++|.
T Consensus       348 Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          348 GTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             TSEEEEECSTTSSHHHHHTTTH
T ss_pred             CCEEEEEeeCCCCHHHHHHHHH
Confidence            8999999999999999998764

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.33  E-value=2.4e-07  Score=60.19  Aligned_cols=24  Identities=13%  Similarity=0.232  Sum_probs=22.5

Q ss_pred             CCceEEEecCCCCcchHHHHHHHh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~   48 (109)
                      +++++|+||||+|||||+..|++.
T Consensus        24 G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           24 GSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            689999999999999999999984

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.33  E-value=2.2e-07  Score=58.69  Aligned_cols=25  Identities=28%  Similarity=0.376  Sum_probs=22.5

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      .++|+|+||+|||||++.+.+...+
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~~~   55 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNEFN   55 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCC
Confidence            5789999999999999999998764

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.32  E-value=1.5e-07  Score=60.78  Aligned_cols=32  Identities=22%  Similarity=0.232  Sum_probs=25.8

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh---ccCccccc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL---SDESTSLR   57 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l---~~~~~~~~   57 (109)
                      ..++|+|++||||||+.+.|+..+   ....|.+.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~   40 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIY   40 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCcccCccee
Confidence            468999999999999999999876   34445543

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.28  E-value=3.5e-07  Score=62.05  Aligned_cols=30  Identities=20%  Similarity=0.289  Sum_probs=26.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDEST   54 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~   54 (109)
                      +.+++|+|+||+||||++..|++.+.+..|
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G  134 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKH  134 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence            679999999999999999999999876445

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.25  E-value=3.8e-07  Score=57.77  Aligned_cols=24  Identities=29%  Similarity=0.361  Sum_probs=21.4

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .++|+|+||+|||||+++|.+...
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~~~   30 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRNEF   30 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCC
Confidence            468999999999999999999753

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.25  E-value=2.4e-07  Score=71.11  Aligned_cols=25  Identities=24%  Similarity=0.488  Sum_probs=22.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +++++|+|||||||||+|++|+++.
T Consensus       673 g~i~~ItGPNGaGKSTlLr~i~~i~  697 (918)
T 3thx_B          673 ERVMIITGPNMGGKSSYIKQVALIT  697 (918)
T ss_dssp             CCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCchHHHHHHHHHHH
Confidence            6899999999999999999998654

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.25  E-value=3.9e-07  Score=64.10  Aligned_cols=23  Identities=39%  Similarity=0.475  Sum_probs=21.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHH
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~   47 (109)
                      +..++|+|+||+|||||+++|.+
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC
Confidence            57899999999999999999999

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.25  E-value=3.8e-07  Score=62.22  Aligned_cols=33  Identities=30%  Similarity=0.321  Sum_probs=28.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      +.+++|+|+||+||||++..|++.+.+..+.+.
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~  136 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVV  136 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEE
Confidence            578999999999999999999999987666554

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=98.24  E-value=5.1e-07  Score=60.34  Aligned_cols=26  Identities=19%  Similarity=0.309  Sum_probs=23.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +++++|+||||||||||+..|++.+.
T Consensus        30 G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           30 GTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            78999999999999999999998765

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.23  E-value=4.9e-07  Score=59.45  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=21.6

Q ss_pred             eEEEecCCCCcchHHHHHHHhhc
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ++|+||||+|||||+++|++.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~   74 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEAR   74 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            89999999999999999999875

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.23  E-value=4.3e-07  Score=62.87  Aligned_cols=31  Identities=23%  Similarity=0.284  Sum_probs=26.1

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTS   55 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~   55 (109)
                      +..++|+|++|||||||+++|.+.+.+..+.
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~  104 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHK  104 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCe
Confidence            4678999999999999999999987655443

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.23  E-value=4.8e-07  Score=62.66  Aligned_cols=25  Identities=24%  Similarity=0.425  Sum_probs=23.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++++.|+||||||||||+..|++..
T Consensus       131 G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          131 QAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999999999987

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=98.20  E-value=6e-07  Score=57.10  Aligned_cols=21  Identities=24%  Similarity=0.203  Sum_probs=19.7

Q ss_pred             ceEEEecCCCCcchHHHHHHH
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~   47 (109)
                      .++|+|+|||||||+.+.|+.
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            478999999999999999998

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.20  E-value=6.4e-07  Score=59.79  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=21.6

Q ss_pred             eEEEecCCCCcchHHHHHHHhhc
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ++|+||||+|||||+++|++.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCcChHHHHHHHHHHHcC
Confidence            78999999999999999999875

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.19  E-value=5.1e-07  Score=57.57  Aligned_cols=21  Identities=24%  Similarity=0.135  Sum_probs=19.6

Q ss_pred             ceEEEecCCCCcchHHHHHHH
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~   47 (109)
                      +++|+|+|||||||+.+.|+.
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999987

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.19  E-value=5.7e-07  Score=69.20  Aligned_cols=24  Identities=21%  Similarity=0.422  Sum_probs=21.4

Q ss_pred             CCceEEEecCCCCcchHHHHHHHh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~   48 (109)
                      +++++|+|||||||||+|++|+.+
T Consensus       662 g~i~~ItGpNGsGKSTlLr~ial~  685 (934)
T 3thx_A          662 QMFHIITGPNMGGKSTYIRQTGVI  685 (934)
T ss_dssp             BCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999999443

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.17  E-value=6.1e-07  Score=57.29  Aligned_cols=25  Identities=24%  Similarity=0.142  Sum_probs=22.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +.+++|+|++||||||++++|+..+
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhc
Confidence            5689999999999999999999875

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.17  E-value=9.1e-07  Score=56.32  Aligned_cols=26  Identities=23%  Similarity=0.195  Sum_probs=23.2

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +..++|+|++||||||+.++|+..+.
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~~l~   50 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFARKLN   50 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            56899999999999999999997653

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.17  E-value=9.1e-07  Score=56.50  Aligned_cols=26  Identities=23%  Similarity=0.272  Sum_probs=23.4

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +.+++|+||+|||||||.+.|...+.
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            67899999999999999999987663

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.16  E-value=9e-07  Score=61.97  Aligned_cols=26  Identities=27%  Similarity=0.221  Sum_probs=23.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ++.++|+||||||||||+++|++.+.
T Consensus       169 ~~~i~l~G~~GsGKSTl~~~l~~~~~  194 (377)
T 1svm_A          169 KRYWLFKGPIDSGKTTLAAALLELCG  194 (377)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            67999999999999999999998764

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.16  E-value=8.8e-07  Score=56.63  Aligned_cols=23  Identities=22%  Similarity=0.248  Sum_probs=21.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHH
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~   47 (109)
                      +++++|+||||+|||||+..|++
T Consensus        20 G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           20 GVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            68999999999999999999988

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.15  E-value=3.6e-07  Score=69.63  Aligned_cols=26  Identities=31%  Similarity=0.340  Sum_probs=23.6

Q ss_pred             CCceEEEecCCCCcchHHHH-HHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFA-IQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~a-l~~~l~   50 (109)
                      |++++|+|+||||||||+++ |++++.
T Consensus       523 Geiv~I~G~nGSGKSTLl~~~L~g~l~  549 (842)
T 2vf7_A          523 GVMTSVTGVSGSGKSTLVSQALVDALA  549 (842)
T ss_dssp             SSEEEEECCTTSSHHHHCCCCCHHHHH
T ss_pred             CCEEEEEcCCCcCHHHHHHHHHHHHHH
Confidence            89999999999999999997 777764

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.14  E-value=9.5e-07  Score=55.19  Aligned_cols=27  Identities=22%  Similarity=0.234  Sum_probs=23.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      +.+++|+|++||||||+.++|+..+.+
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~~l~~   31 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEEYLVC   31 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            567899999999999999999987743

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.14  E-value=9.1e-07  Score=60.54  Aligned_cols=30  Identities=23%  Similarity=0.361  Sum_probs=24.7

Q ss_pred             eEEEecCCCCcchHHHHHHH-hhccCccccc
Q psy16868         28 NVVVGRNGSGKSNFFFAIQF-VLSDESTSLR   57 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~-~l~~~~~~~~   57 (109)
                      ++|+||||+||||++++|++ ++.+..|.+.
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~   69 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLK   69 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHSCTTCCC--
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCCCCCeEE
Confidence            88999999999999999999 5666666654

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.13  E-value=1.1e-06  Score=63.61  Aligned_cols=28  Identities=14%  Similarity=0.141  Sum_probs=25.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDE   52 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~   52 (109)
                      +++++|+|+||||||||+.++++...+.
T Consensus       281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~  308 (525)
T 1tf7_A          281 DSIILATGATGTGKTLLVSRFVENACAN  308 (525)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence            7899999999999999999999998764

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=98.12  E-value=1.3e-06  Score=55.53  Aligned_cols=26  Identities=38%  Similarity=0.300  Sum_probs=22.7

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ..+++|+|++||||||+.+.|+..+.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg   43 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACG   43 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35899999999999999999987753

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.12  E-value=1.3e-06  Score=57.99  Aligned_cols=45  Identities=22%  Similarity=0.275  Sum_probs=26.8

Q ss_pred             EEEece-e-ec-CCCeeEecCC--------CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868          6 VIIHGF-K-SY-KEQTVVEPFD--------KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus         6 i~i~n~-~-~~-~~~~~l~~~~--------~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ++++|+ . .| ....++++++        ++.++|+|++||||||+.++|+..+.
T Consensus        18 l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg   73 (250)
T 3nwj_A           18 LETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG   73 (250)
T ss_dssp             --------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             eEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            556665 2 45 3344444442        67999999999999999999998654

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.11  E-value=1.1e-06  Score=64.14  Aligned_cols=33  Identities=18%  Similarity=0.196  Sum_probs=29.1

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      +..++|+||||+|||||+++|+..+.+..+.+.
T Consensus       108 g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~  140 (543)
T 3m6a_A          108 GPILCLAGPPGVGKTSLAKSIAKSLGRKFVRIS  140 (543)
T ss_dssp             SCEEEEESSSSSSHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEE
Confidence            678999999999999999999999987766655

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=98.08  E-value=1.1e-06  Score=59.38  Aligned_cols=27  Identities=30%  Similarity=0.198  Sum_probs=24.5

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      +.+++|+|++|||||||++.|..++.+
T Consensus        31 ~~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           31 PLFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            568999999999999999999998874

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.07  E-value=1.4e-06  Score=59.04  Aligned_cols=34  Identities=21%  Similarity=0.260  Sum_probs=29.4

Q ss_pred             CCCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868         24 DKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus        24 ~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      .+++++|+|+||+||||++..|++++.+..+.+.
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~  130 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL  130 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            4678999999999999999999999987666654

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.05  E-value=1.7e-06  Score=59.33  Aligned_cols=34  Identities=18%  Similarity=0.194  Sum_probs=29.4

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRH   58 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~   58 (109)
                      +.+++|+|+||+||||++..|++.+.+..+.+.+
T Consensus       105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVll  138 (320)
T 1zu4_A          105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLI  138 (320)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            6789999999999999999999999876666553

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=98.03  E-value=2.1e-06  Score=53.92  Aligned_cols=30  Identities=23%  Similarity=0.204  Sum_probs=25.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDEST   54 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~   54 (109)
                      +.+++|+|++||||||+.+.|+..+....+
T Consensus        13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~   42 (186)
T 2yvu_A           13 GIVVWLTGLPGSGKTTIATRLADLLQKEGY   42 (186)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence            578899999999999999999988765433

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.02  E-value=2.1e-06  Score=59.13  Aligned_cols=31  Identities=32%  Similarity=0.398  Sum_probs=26.3

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTS   55 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~   55 (109)
                      +.+++|+|++|+|||||+++|++.+.+..+.
T Consensus        56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~   86 (341)
T 2p67_A           56 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLK   86 (341)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHHHHHHTTCC
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHHhcCCe
Confidence            5689999999999999999999988654443

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=98.01  E-value=2.7e-06  Score=53.58  Aligned_cols=26  Identities=15%  Similarity=0.201  Sum_probs=22.9

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      .+++|+|++|||||||++.|...+..
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~   32 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCA   32 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhccc
Confidence            56899999999999999999987653

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=98.00  E-value=2.5e-06  Score=60.20  Aligned_cols=27  Identities=15%  Similarity=0.193  Sum_probs=22.1

Q ss_pred             CCceEEEecCCCCcchHHHHH--HHhhcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAI--QFVLSD   51 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al--~~~l~~   51 (109)
                      +++++|+||||||||||+..|  .+++++
T Consensus       178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~  206 (400)
T 3lda_A          178 GSITELFGEFRTGKSQLCHTLAVTCQIPL  206 (400)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHTTSCG
T ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhccCc
Confidence            789999999999999999955  444443

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=98.00  E-value=2.9e-06  Score=54.04  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=20.4

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      ..++|+||+|+|||||++.|.--.
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            457899999999999999986543

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.99  E-value=2.1e-06  Score=52.71  Aligned_cols=23  Identities=26%  Similarity=0.299  Sum_probs=20.4

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|++|+|||||++++.+..
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998753

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.99  E-value=3e-06  Score=52.16  Aligned_cols=24  Identities=17%  Similarity=0.030  Sum_probs=21.1

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +++|+|++||||||+.+.|+..+.
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~   26 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELK   26 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999987653

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.98  E-value=1.8e-06  Score=55.42  Aligned_cols=30  Identities=20%  Similarity=0.235  Sum_probs=25.5

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDEST   54 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~   54 (109)
                      +.+++|+|++||||||+.+.|...+.+..|
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g   54 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEHQLVRDRR   54 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence            678899999999999999999988764333

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.94  E-value=3.2e-06  Score=52.43  Aligned_cols=24  Identities=29%  Similarity=0.335  Sum_probs=21.2

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      ..++|+|++|+|||||+++|.+..
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            467999999999999999998754

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.94  E-value=4.5e-06  Score=51.78  Aligned_cols=26  Identities=31%  Similarity=0.420  Sum_probs=22.4

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +.+++|+|++||||||+.++|+-.+.
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            35688999999999999999987654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.92  E-value=3.7e-06  Score=52.32  Aligned_cols=22  Identities=27%  Similarity=0.357  Sum_probs=20.0

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|++|+|||||+++|.+.
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999874

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=97.92  E-value=1.6e-06  Score=61.43  Aligned_cols=25  Identities=24%  Similarity=0.232  Sum_probs=22.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +..++|+|+|||||||||++|+++.
T Consensus       157 g~~VgLVG~~gAGKSTLL~~Lsg~~  181 (416)
T 1udx_A          157 IADVGLVGYPNAGKSSLLAAMTRAH  181 (416)
T ss_dssp             SCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCC
Confidence            5789999999999999999998874

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.92  E-value=5.3e-06  Score=61.06  Aligned_cols=29  Identities=38%  Similarity=0.560  Sum_probs=26.5

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDES   53 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~   53 (109)
                      +..++|+||||+|||||+++|++++.+..
T Consensus        60 g~~vll~Gp~GtGKTtlar~ia~~l~~~~   88 (604)
T 3k1j_A           60 KRHVLLIGEPGTGKSMLGQAMAELLPTET   88 (604)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred             CCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence            67899999999999999999999997655

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.92  E-value=2.6e-06  Score=57.74  Aligned_cols=25  Identities=24%  Similarity=0.203  Sum_probs=22.3

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +..++|+|++|+|||||+++|.+..
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~   32 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQK   32 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC
Confidence            4578999999999999999998863

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.90  E-value=6e-06  Score=53.53  Aligned_cols=24  Identities=21%  Similarity=0.347  Sum_probs=20.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~   48 (109)
                      +++++|+||||+|||||+..++..
T Consensus        23 G~~~~i~G~~GsGKTtl~~~~~~~   46 (247)
T 2dr3_A           23 RNVVLLSGGPGTGKTIFSQQFLWN   46 (247)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999996655443

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.90  E-value=5.9e-06  Score=51.33  Aligned_cols=24  Identities=38%  Similarity=0.380  Sum_probs=21.0

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .++|+|++||||||+.++|+..+.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~   29 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLD   29 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC
Confidence            578999999999999999987653

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.89  E-value=5.6e-06  Score=54.42  Aligned_cols=25  Identities=28%  Similarity=0.288  Sum_probs=22.2

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .-++|+||+|+|||||+++|+..+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHcC
Confidence            4578999999999999999998765

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.88  E-value=5.7e-06  Score=54.74  Aligned_cols=24  Identities=21%  Similarity=0.300  Sum_probs=21.1

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +++|+||+|||||||.++|+..+.
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~   26 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETG   26 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCC
Confidence            578999999999999999987654

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.87  E-value=3e-06  Score=65.33  Aligned_cols=22  Identities=32%  Similarity=0.413  Sum_probs=20.6

Q ss_pred             CCceEEEecCCCCcchHHHHHH
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQ   46 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~   46 (109)
                      |++++|+|+||||||||+++|.
T Consensus       650 Geiv~I~G~nGSGKSTLl~~ll  671 (972)
T 2r6f_A          650 GTFVAVTGVSGSGKSTLVNEVL  671 (972)
T ss_dssp             SSEEECCBCTTSSHHHHHTTTH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHH
Confidence            8999999999999999999864

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.87  E-value=5.1e-06  Score=50.92  Aligned_cols=19  Identities=37%  Similarity=0.506  Sum_probs=17.9

Q ss_pred             ceEEEecCCCCcchHHHHH
Q psy16868         27 HNVVVGRNGSGKSNFFFAI   45 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al   45 (109)
                      +++|+|++||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999999999

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.86  E-value=4.2e-06  Score=52.28  Aligned_cols=24  Identities=21%  Similarity=0.286  Sum_probs=20.6

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .+++|+|++||||||+.+.|+-.+
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999998533

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.85  E-value=4e-06  Score=52.35  Aligned_cols=22  Identities=27%  Similarity=0.507  Sum_probs=19.8

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|++|+|||||++.+.+.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999999875

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.85  E-value=8.1e-06  Score=53.29  Aligned_cols=27  Identities=22%  Similarity=0.283  Sum_probs=24.3

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      +.+++|.|++||||||+++.|...+..
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            568899999999999999999988764

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.83  E-value=9e-06  Score=52.99  Aligned_cols=25  Identities=24%  Similarity=0.138  Sum_probs=22.5

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +.+++|+|++||||||+.+.|+..+
T Consensus        16 ~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           16 TIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            5689999999999999999999754

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.83  E-value=8.4e-06  Score=55.79  Aligned_cols=26  Identities=19%  Similarity=0.319  Sum_probs=23.1

Q ss_pred             eEEEecCCCCcchHHHHHHHhhccCc
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVLSDES   53 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l~~~~   53 (109)
                      .+|+||+|+||||++++++..+.+..
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~~~~   74 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIYGKN   74 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCCC
Confidence            88999999999999999999876543

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.83  E-value=8.2e-06  Score=51.45  Aligned_cols=23  Identities=30%  Similarity=0.358  Sum_probs=20.6

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +++|.|+.||||||+.+.|+..+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            47899999999999999998854

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.83  E-value=8e-06  Score=50.99  Aligned_cols=26  Identities=23%  Similarity=0.130  Sum_probs=22.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +.+++|.|++||||||+.+.|+-.+.
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35688999999999999999987554

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.82  E-value=7.4e-06  Score=50.69  Aligned_cols=22  Identities=27%  Similarity=0.339  Sum_probs=19.7

Q ss_pred             CceEEEecCCCCcchHHHHHHH
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~   47 (109)
                      .+++|.|++||||||+.+.|+-
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3578999999999999999986

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.80  E-value=4.1e-06  Score=53.41  Aligned_cols=24  Identities=17%  Similarity=0.261  Sum_probs=21.6

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +++|.|++||||||+++.|...+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999988775

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.80  E-value=9.2e-06  Score=56.15  Aligned_cols=24  Identities=33%  Similarity=0.238  Sum_probs=21.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~   48 (109)
                      -..++|+|++|||||||+++|.+.
T Consensus        34 lp~I~vvG~~~sGKSSLln~l~g~   57 (360)
T 3t34_A           34 LPAIAVVGGQSSGKSSVLESIVGK   57 (360)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            358999999999999999999994

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.79  E-value=1.1e-05  Score=54.78  Aligned_cols=33  Identities=15%  Similarity=0.238  Sum_probs=27.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      +.+++++|+||+||||++..|++.+....+.+.
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~  130 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVG  130 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence            568899999999999999999999876555443

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.79  E-value=8.8e-06  Score=54.84  Aligned_cols=25  Identities=28%  Similarity=0.222  Sum_probs=21.5

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +.+++|+||+||||||+.+.|.--+
T Consensus        33 ~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           33 PTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578899999999999999997544

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.78  E-value=9.4e-06  Score=50.84  Aligned_cols=25  Identities=24%  Similarity=0.279  Sum_probs=21.4

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +.+++|+|++||||||+.+.|+-.+
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc
Confidence            3568899999999999999997654

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.77  E-value=7.1e-06  Score=54.13  Aligned_cols=26  Identities=19%  Similarity=0.216  Sum_probs=22.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +.+++|+|++||||||+.+.|+..+.
T Consensus        32 ~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           32 PIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            46788999999999999999988764

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.77  E-value=1.2e-05  Score=50.03  Aligned_cols=25  Identities=16%  Similarity=0.154  Sum_probs=21.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +..++|+|++||||||+.++|+-.+
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            4678999999999999999998554

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.77  E-value=1.1e-05  Score=56.19  Aligned_cols=31  Identities=16%  Similarity=0.149  Sum_probs=25.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTS   55 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~   55 (109)
                      +.++.|+||+|+|||||+..++..+.+..+.
T Consensus        61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~   91 (356)
T 3hr8_A           61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGV   91 (356)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhcCCe
Confidence            5689999999999999999998877654443

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.76  E-value=1.2e-05  Score=50.50  Aligned_cols=24  Identities=21%  Similarity=0.278  Sum_probs=21.7

Q ss_pred             CCceEEEecCCCCcchHHHHHHHh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~   48 (109)
                      +..++|+|++||||||+.++|+-.
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            567899999999999999999876

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.76  E-value=1.4e-05  Score=50.18  Aligned_cols=26  Identities=23%  Similarity=0.124  Sum_probs=22.8

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      .+++|+|++|||||||+..|...+..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~   30 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVR   30 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence            46789999999999999999888754

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.75  E-value=1.1e-05  Score=51.80  Aligned_cols=22  Identities=32%  Similarity=0.202  Sum_probs=20.1

Q ss_pred             CceEEEecCCCCcchHHHHHHH
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~   47 (109)
                      -+++|+|++||||||+.+.|+.
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999987

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.75  E-value=1.2e-05  Score=52.41  Aligned_cols=24  Identities=33%  Similarity=0.256  Sum_probs=21.3

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .++|+|++|+|||||+++|.+...
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~~~   54 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGRKV   54 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc
Confidence            478999999999999999988654

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.75  E-value=1.6e-05  Score=49.65  Aligned_cols=25  Identities=16%  Similarity=0.214  Sum_probs=21.6

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ..++|+|+.||||||+.++|+-.+.
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~~l~   30 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAKLTK   30 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5688999999999999999986653

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.74  E-value=1.4e-05  Score=52.56  Aligned_cols=24  Identities=29%  Similarity=0.261  Sum_probs=21.2

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      -+++|.||+||||||+.+.|+..+
T Consensus        10 ~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999998654

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.74  E-value=1.1e-05  Score=53.59  Aligned_cols=24  Identities=25%  Similarity=0.344  Sum_probs=21.0

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .++|+|++|+|||||+++|.+...
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~~~   28 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGLRQ   28 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            468999999999999999987643

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.73  E-value=1.3e-05  Score=50.01  Aligned_cols=24  Identities=29%  Similarity=0.470  Sum_probs=21.0

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +++|.|+.||||||+.+.|+-.+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999987654

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.72  E-value=1.5e-05  Score=56.62  Aligned_cols=34  Identities=21%  Similarity=0.260  Sum_probs=28.7

Q ss_pred             CCCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868         24 DKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus        24 ~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      .+.+++++|+||+||||++..|++.+.+..+.+.
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vl  130 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL  130 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            3678999999999999999999999987655544

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.71  E-value=1.2e-05  Score=56.97  Aligned_cols=23  Identities=39%  Similarity=0.442  Sum_probs=21.2

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+||+|||||+++|.+..
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~  204 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKE  204 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTST
T ss_pred             eEEEECCCCCCHHHHHHHHhCCc
Confidence            58899999999999999999875

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.71  E-value=2.2e-05  Score=49.68  Aligned_cols=27  Identities=26%  Similarity=0.306  Sum_probs=23.3

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhccC
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSDE   52 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~~   52 (109)
                      ..+.|.||+|+|||+|+++|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~   81 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKR   81 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            568899999999999999999877543

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.70  E-value=2.8e-05  Score=48.32  Aligned_cols=24  Identities=29%  Similarity=0.302  Sum_probs=20.9

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      -.++|+|+.|+|||||++.+.+--
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCc
Confidence            468899999999999999997653

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.70  E-value=1.6e-05  Score=61.23  Aligned_cols=18  Identities=39%  Similarity=0.506  Sum_probs=17.5

Q ss_pred             CCceEEEecCCCCcchHH
Q psy16868         25 KRHNVVVGRNGSGKSNFF   42 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll   42 (109)
                      |++++|+|+||||||||+
T Consensus       610 Geiv~I~G~SGSGKSTLl  627 (916)
T 3pih_A          610 GVFVCVTGVSGSGKSSLV  627 (916)
T ss_dssp             SSEEEEECSTTSSHHHHH
T ss_pred             CcEEEEEccCCCChhhhH
Confidence            899999999999999997

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.70  E-value=1.6e-05  Score=57.53  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=21.5

Q ss_pred             eEEEecCCCCcchHHHHHHHhhc
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ++|+||||+|||||+++|++.+.
T Consensus        67 vLL~GppGtGKTtLaraIa~~~~   89 (499)
T 2dhr_A           67 VLLVGPPGVGKTHLARAVAGEAR   89 (499)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999999875

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.69  E-value=1.9e-05  Score=53.29  Aligned_cols=26  Identities=23%  Similarity=0.208  Sum_probs=22.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +..+.|+||+|+|||+|+++|+..+.
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~~~   74 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANECQ   74 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             CceEEEECCCCcCHHHHHHHHHHHhC
Confidence            45688999999999999999998764

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.69  E-value=1.7e-05  Score=50.06  Aligned_cols=23  Identities=26%  Similarity=0.161  Sum_probs=20.6

Q ss_pred             CceEEEecCCCCcchHHHHHHHh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~   48 (109)
                      .+++|+|++||||||+.+.|+..
T Consensus         9 ~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            9 IIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHC
Confidence            46899999999999999999865

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.68  E-value=1.9e-05  Score=49.94  Aligned_cols=24  Identities=25%  Similarity=0.239  Sum_probs=21.5

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +++|.|++||||||+.++|+..+.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg   27 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALG   27 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC
Confidence            688999999999999999988654

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.67  E-value=2e-05  Score=49.82  Aligned_cols=25  Identities=24%  Similarity=0.182  Sum_probs=22.1

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +.+++|.|+.||||||+.+.|+-.+
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999998765

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.66  E-value=2.2e-05  Score=52.68  Aligned_cols=29  Identities=21%  Similarity=0.307  Sum_probs=24.6

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhccCcc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSDEST   54 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~~~~   54 (109)
                      ..++|+||+|+|||+++++|+..+....+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~   76 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEE   76 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGG
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCc
Confidence            46889999999999999999998865433

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.66  E-value=1.9e-05  Score=55.68  Aligned_cols=24  Identities=29%  Similarity=0.335  Sum_probs=21.3

Q ss_pred             CCceEEEecCCCCcchHHHHHHHh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~   48 (109)
                      +..++|+|+||+|||||+++|.+.
T Consensus        22 ~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           22 SLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             CCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            457899999999999999999987

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.66  E-value=1.5e-05  Score=55.54  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=20.4

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .++|+|++|+|||||+++|.+...
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~  204 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQ  204 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCc
Confidence            488999999999999999998654

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.65  E-value=2.7e-05  Score=48.80  Aligned_cols=25  Identities=32%  Similarity=0.229  Sum_probs=21.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +.+++|+|+.||||||+.+.|+-.+
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578999999999999999997654

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.64  E-value=2.3e-05  Score=49.75  Aligned_cols=25  Identities=28%  Similarity=0.149  Sum_probs=21.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +.+++|.|+.||||||+.+.|+-.+
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~l   34 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEYL   34 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            5678999999999999999998654

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.64  E-value=2.8e-05  Score=48.29  Aligned_cols=26  Identities=19%  Similarity=0.152  Sum_probs=17.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +.+++|.|++||||||+.+.|+-.+.
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~l~   30 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHERLP   30 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            35788999999999999999975543

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.64  E-value=1.5e-05  Score=56.72  Aligned_cols=32  Identities=19%  Similarity=0.241  Sum_probs=26.7

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCcccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSL   56 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~   56 (109)
                      +.+++++|++|+||||++..|+..+....+.+
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kV  128 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKV  128 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence            56889999999999999999998887654443

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.64  E-value=2.7e-05  Score=49.99  Aligned_cols=27  Identities=15%  Similarity=0.139  Sum_probs=23.2

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      +..++|.||+|+|||||+++++..+..
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~~~~   78 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACARANE   78 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            467889999999999999999877653

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.64  E-value=2e-05  Score=49.22  Aligned_cols=24  Identities=25%  Similarity=0.177  Sum_probs=20.5

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .+++|+|++||||||+.+.|+-.+
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999987543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.63  E-value=2.4e-05  Score=48.79  Aligned_cols=24  Identities=17%  Similarity=0.277  Sum_probs=21.1

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      -.++|+|+.|+|||||+.++.+..
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            357899999999999999998764

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.63  E-value=2.4e-05  Score=49.52  Aligned_cols=26  Identities=23%  Similarity=0.137  Sum_probs=22.2

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +.+++|.|+.||||||+.+.|+-.+.
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            34688999999999999999987654

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.62  E-value=2.7e-05  Score=48.91  Aligned_cols=25  Identities=20%  Similarity=0.181  Sum_probs=21.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +.+++|+|+.||||||+.+.|+-.+
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578999999999999999997654

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=97.61  E-value=3.5e-05  Score=53.72  Aligned_cols=33  Identities=12%  Similarity=0.101  Sum_probs=26.4

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      ...++|+|++||||||+++.|...+....+.+.
T Consensus        35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~   67 (392)
T 4ag6_A           35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVI   67 (392)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred             cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence            467899999999999999999887765444443

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.60  E-value=3.4e-05  Score=52.80  Aligned_cols=27  Identities=19%  Similarity=0.250  Sum_probs=23.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      +..++|+||+|+|||||+++++..+..
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~~~~   71 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSKLHK   71 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            568899999999999999999987643

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.60  E-value=3e-05  Score=49.27  Aligned_cols=25  Identities=24%  Similarity=0.120  Sum_probs=21.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +.+++|+|+.||||||+.+.|+-.+
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~~l   33 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVEAL   33 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4678999999999999999998654

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.59  E-value=3.6e-05  Score=52.88  Aligned_cols=26  Identities=23%  Similarity=0.408  Sum_probs=23.2

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhccC
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLSDE   52 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~~~   52 (109)
                      .++|+||+|+|||||+++++..+.+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~   71 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDK   71 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhh
Confidence            78899999999999999999887653

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.58  E-value=3.2e-05  Score=46.89  Aligned_cols=22  Identities=32%  Similarity=0.308  Sum_probs=19.6

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++|+|+.|+|||||++++.+-.
T Consensus         8 i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            8 MVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEECcCCCCHHHHHHHHHcCC
Confidence            6899999999999999998753

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.58  E-value=3.6e-05  Score=47.35  Aligned_cols=24  Identities=21%  Similarity=0.238  Sum_probs=20.9

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .+++|+|+.||||||+.+.|+-.+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            367899999999999999998654

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.58  E-value=3.7e-05  Score=52.13  Aligned_cols=25  Identities=20%  Similarity=0.258  Sum_probs=22.5

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ..+.|.||+|+|||||+++|+..+.
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~~~   62 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNEAK   62 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHH
Confidence            5788999999999999999998774

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.57  E-value=3.5e-05  Score=51.53  Aligned_cols=26  Identities=23%  Similarity=0.266  Sum_probs=22.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +..+.|.||+|+||||++++|+..+.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~~~   79 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATECS   79 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            45788999999999999999998764

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.57  E-value=3.9e-05  Score=53.41  Aligned_cols=23  Identities=30%  Similarity=0.469  Sum_probs=21.3

Q ss_pred             eEEEecCCCCcchHHHHHHHhhc
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ++|+|++||||||+.++|+..+.
T Consensus        27 i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           27 VILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhC
Confidence            88999999999999999998765

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=97.57  E-value=3.6e-05  Score=46.33  Aligned_cols=22  Identities=36%  Similarity=0.391  Sum_probs=19.5

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++++|+.|+|||||++++.+-.
T Consensus         6 i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            6 LVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHHhCc
Confidence            6899999999999999997653

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.57  E-value=4.5e-05  Score=47.56  Aligned_cols=24  Identities=38%  Similarity=0.393  Sum_probs=20.9

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .+++|+|+.||||||+.+.|+-.+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc
Confidence            468899999999999999997654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.56  E-value=3.6e-05  Score=46.38  Aligned_cols=23  Identities=35%  Similarity=0.440  Sum_probs=19.9

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++++|+.|+|||||++.+.+-.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999998653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=97.56  E-value=3.9e-05  Score=46.59  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=19.5

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++|+|+.|+|||||++++.+--
T Consensus         6 i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            6 ILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECcCCCCHHHHHHHHHhCC
Confidence            6899999999999999998653

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=97.55  E-value=3.7e-05  Score=46.39  Aligned_cols=22  Identities=32%  Similarity=0.348  Sum_probs=19.4

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++|+|+.|+|||||++++..-.
T Consensus         6 i~v~G~~~~GKSsli~~l~~~~   27 (167)
T 1kao_A            6 VVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            6899999999999999987643

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.55  E-value=4.7e-05  Score=48.98  Aligned_cols=25  Identities=20%  Similarity=0.158  Sum_probs=21.5

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .+++|+|+.||||||+.+.|+-.+.
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4688999999999999999976553

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.55  E-value=3.9e-05  Score=48.13  Aligned_cols=23  Identities=13%  Similarity=0.316  Sum_probs=20.4

Q ss_pred             CceEEEecCCCCcchHHHHHHHh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~   48 (109)
                      -.++|+|++|+|||||++.+.+-
T Consensus        24 ~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           24 GKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            46789999999999999999863

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.55  E-value=3.5e-05  Score=48.01  Aligned_cols=24  Identities=29%  Similarity=0.252  Sum_probs=20.8

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .+++|+|+.||||||+.+.|+-.+
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999997644

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.55  E-value=3.3e-05  Score=49.34  Aligned_cols=22  Identities=27%  Similarity=0.205  Sum_probs=19.1

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++|+|+.||||||+.+.|+--+
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            3 IVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999996544

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=97.55  E-value=3.9e-05  Score=46.59  Aligned_cols=23  Identities=22%  Similarity=0.342  Sum_probs=20.1

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++++.+-.
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            36899999999999999998754

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.54  E-value=4e-05  Score=46.46  Aligned_cols=22  Identities=23%  Similarity=0.246  Sum_probs=19.5

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++++|+.|+|||||++++.+-.
T Consensus         6 i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            6 LVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6899999999999999997654

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=97.54  E-value=4e-05  Score=46.29  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=19.9

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++++|+.|+|||||++++.+-.
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~~   28 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            36899999999999999998653

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=97.54  E-value=4e-05  Score=46.61  Aligned_cols=23  Identities=17%  Similarity=0.208  Sum_probs=19.9

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~~   30 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCENK   30 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            36899999999999999998653

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.54  E-value=4.5e-05  Score=47.00  Aligned_cols=26  Identities=23%  Similarity=0.405  Sum_probs=22.3

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +..+.|+||.|+|||+++++++..+.
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~~~   68 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHH
Confidence            35678999999999999999987763

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.53  E-value=3.6e-05  Score=48.09  Aligned_cols=23  Identities=26%  Similarity=0.177  Sum_probs=20.3

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +++|.|+.||||||+.+.|+-.+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999997754

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=97.53  E-value=3e-05  Score=51.90  Aligned_cols=22  Identities=27%  Similarity=0.378  Sum_probs=20.1

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|++|+|||||+++|.+.
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4789999999999999999875

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=97.53  E-value=4.4e-05  Score=46.82  Aligned_cols=23  Identities=35%  Similarity=0.395  Sum_probs=20.1

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++++.+-.
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~~   33 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQSY   33 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            47899999999999999998753

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=97.53  E-value=3.2e-05  Score=47.23  Aligned_cols=23  Identities=22%  Similarity=0.242  Sum_probs=19.5

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCccHHHHHHHHhcCC
Confidence            36899999999999999997653

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.53  E-value=4.4e-05  Score=49.33  Aligned_cols=24  Identities=29%  Similarity=0.369  Sum_probs=20.8

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .+++|+|+.||||||+.+.|+-.+
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            568999999999999999997543

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=97.52  E-value=4.3e-05  Score=46.82  Aligned_cols=23  Identities=22%  Similarity=0.313  Sum_probs=19.9

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            36899999999999999997653

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=97.52  E-value=4.3e-05  Score=46.90  Aligned_cols=23  Identities=17%  Similarity=0.349  Sum_probs=20.1

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            46899999999999999998754

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=97.52  E-value=4.4e-05  Score=46.20  Aligned_cols=21  Identities=33%  Similarity=0.366  Sum_probs=19.1

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++|+|+.|+|||||++++.+-
T Consensus         6 i~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            689999999999999999864

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.52  E-value=4.4e-05  Score=51.53  Aligned_cols=25  Identities=20%  Similarity=0.300  Sum_probs=18.4

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      -+++|.|++||||||+.+.|.-.+.
T Consensus         6 ~iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            6 PIISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4689999999999999999987543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.51  E-value=3.9e-05  Score=46.61  Aligned_cols=21  Identities=29%  Similarity=0.362  Sum_probs=19.0

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++++|+.|+|||||++++.+-
T Consensus         6 i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            6 VAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            689999999999999999864

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.51  E-value=4e-05  Score=49.00  Aligned_cols=22  Identities=27%  Similarity=0.158  Sum_probs=19.0

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++|+|+.||||||+.+.|+--+
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            3 LVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999996543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=97.50  E-value=4.2e-05  Score=47.71  Aligned_cols=23  Identities=26%  Similarity=0.364  Sum_probs=20.4

Q ss_pred             CceEEEecCCCCcchHHHHHHHh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~   48 (109)
                      -.++|+|+.|+|||||+++|.+-
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46789999999999999999764

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.50  E-value=4.9e-05  Score=54.02  Aligned_cols=25  Identities=20%  Similarity=0.279  Sum_probs=22.3

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ..+.|.||+|+|||||+++|+..+.
T Consensus       131 ~~lll~Gp~G~GKTtLa~aia~~l~  155 (440)
T 2z4s_A          131 NPLFIYGGVGLGKTHLLQSIGNYVV  155 (440)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999998773

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.50  E-value=4.3e-05  Score=47.51  Aligned_cols=22  Identities=14%  Similarity=0.327  Sum_probs=19.7

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|++|+|||||++.+.+-
T Consensus        18 ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           18 RILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999998764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=97.49  E-value=5e-05  Score=46.00  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=19.4

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|+.|+|||||++++.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3689999999999999999864

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.49  E-value=4.4e-05  Score=46.79  Aligned_cols=23  Identities=26%  Similarity=0.135  Sum_probs=20.1

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|.|+.||||||+.+.|+-.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            46899999999999999998754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.49  E-value=4.2e-05  Score=48.32  Aligned_cols=22  Identities=18%  Similarity=0.377  Sum_probs=19.5

Q ss_pred             CceEEEecCCCCcchHHHHHHH
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~   47 (109)
                      -.++|+|++|+|||||++++.+
T Consensus        26 ~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           26 GKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            4578999999999999999865

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.48  E-value=4.5e-05  Score=48.25  Aligned_cols=25  Identities=20%  Similarity=0.123  Sum_probs=20.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      ..+++|+|+.||||||+.+.|+-.+
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            3468899999999999999987543

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=97.48  E-value=4.3e-05  Score=47.32  Aligned_cols=22  Identities=23%  Similarity=0.394  Sum_probs=19.4

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++|+|+.|+|||||++.+.+-.
T Consensus         4 i~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            4 IIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHhCcC
Confidence            6899999999999999997653

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=97.48  E-value=4.3e-05  Score=46.83  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=20.3

Q ss_pred             CceEEEecCCCCcchHHHHHHHh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~   48 (109)
                      -.++|+|+.|+|||||++++.+-
T Consensus         9 ~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            9 PVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            45789999999999999999764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=97.48  E-value=5.5e-05  Score=46.27  Aligned_cols=22  Identities=18%  Similarity=0.374  Sum_probs=19.5

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|+.|+|||||++++.+-
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999754

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=97.48  E-value=4.1e-05  Score=46.59  Aligned_cols=21  Identities=29%  Similarity=0.355  Sum_probs=18.8

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++|+|+.|+|||||++.+.+.
T Consensus         5 i~ivG~~~~GKSsli~~l~~~   25 (169)
T 3q85_A            5 VMLVGESGVGKSTLAGTFGGL   25 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999998754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=97.48  E-value=5.1e-05  Score=47.37  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.2

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=97.48  E-value=5.2e-05  Score=46.94  Aligned_cols=23  Identities=17%  Similarity=0.329  Sum_probs=20.1

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++++.+-.
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~~   35 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDGK   35 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999998643

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=97.48  E-value=5.2e-05  Score=47.19  Aligned_cols=23  Identities=22%  Similarity=0.379  Sum_probs=20.4

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++++.+-.
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            37899999999999999998764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=97.48  E-value=5.3e-05  Score=46.82  Aligned_cols=22  Identities=36%  Similarity=0.418  Sum_probs=19.5

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++|+|+.|+|||||+++|.+-.
T Consensus         7 i~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            7 LVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            6899999999999999998644

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=97.48  E-value=5.4e-05  Score=46.05  Aligned_cols=22  Identities=23%  Similarity=0.613  Sum_probs=19.5

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|+.|+|||||++.+..-
T Consensus         9 ~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            9 RILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999764

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.47  E-value=2.5e-05  Score=54.21  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=19.3

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|++|+|||||+++|.+.
T Consensus        39 ~I~vvG~~g~GKSTLln~L~~~   60 (361)
T 2qag_A           39 TLMVVGESGLGKSTLINSLFLT   60 (361)
T ss_dssp             CEEECCCTTSCHHHHHHHHTTC
T ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Confidence            3689999999999999998665

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.47  E-value=5.6e-05  Score=47.85  Aligned_cols=25  Identities=20%  Similarity=0.291  Sum_probs=21.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +-+++|+|+.||||||+.+.|+-.+
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578899999999999999998654

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.46  E-value=6.5e-05  Score=47.83  Aligned_cols=25  Identities=20%  Similarity=0.255  Sum_probs=21.8

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ..++|.||.|+|||||+++++..+.
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4688999999999999999987664

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=97.46  E-value=5.2e-05  Score=45.94  Aligned_cols=21  Identities=29%  Similarity=0.311  Sum_probs=18.6

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++|+|+.|+|||||++.+.+.
T Consensus         5 i~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            5 VLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEECCCCCCHHHHHHHHcCc
Confidence            689999999999999998653

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.46  E-value=3.7e-05  Score=47.40  Aligned_cols=21  Identities=24%  Similarity=0.708  Sum_probs=18.7

Q ss_pred             ceEEEecCCCCcchHHHHHHH
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~   47 (109)
                      .++|+|++|+|||||++.+..
T Consensus        20 ~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           20 RILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             EEEEEEETTSSHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            578999999999999999863

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=97.45  E-value=6.1e-05  Score=45.56  Aligned_cols=22  Identities=18%  Similarity=0.484  Sum_probs=19.4

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++++|+.|+|||||++.+.+-.
T Consensus         3 i~~~G~~~~GKssl~~~l~~~~   24 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLGE   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            6899999999999999997644

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.45  E-value=6.6e-05  Score=51.96  Aligned_cols=26  Identities=19%  Similarity=0.144  Sum_probs=21.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +.++.|.||+|+|||||+..++....
T Consensus        61 G~iv~I~G~pGsGKTtLal~la~~~~   86 (349)
T 2zr9_A           61 GRVIEIYGPESSGKTTVALHAVANAQ   86 (349)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            67899999999999999888775543

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.45  E-value=5.3e-05  Score=48.98  Aligned_cols=23  Identities=26%  Similarity=0.273  Sum_probs=19.8

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +++|.|++||||||+.+.|+-.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46899999999999999997644

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=97.44  E-value=6.3e-05  Score=46.74  Aligned_cols=24  Identities=25%  Similarity=0.095  Sum_probs=20.6

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .++|+|+.|+|||||++.+.+...
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcc
Confidence            468999999999999999887654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=97.44  E-value=6.7e-05  Score=46.37  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=19.9

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++++.+-.
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            46899999999999999997654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=97.44  E-value=6e-05  Score=46.20  Aligned_cols=23  Identities=26%  Similarity=0.307  Sum_probs=19.9

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhCc
Confidence            36899999999999999998653

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=97.44  E-value=6.4e-05  Score=46.29  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=20.0

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++++.+-.
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~~   42 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYDE   42 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Confidence            47899999999999999998643

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=97.44  E-value=6.4e-05  Score=46.73  Aligned_cols=23  Identities=35%  Similarity=0.382  Sum_probs=20.1

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++++|+.|+|||||++.|.+-.
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47899999999999999998653

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=97.43  E-value=6.5e-05  Score=45.94  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=20.2

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47889999999999999998654

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.43  E-value=6.5e-05  Score=46.11  Aligned_cols=24  Identities=21%  Similarity=0.303  Sum_probs=20.5

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .++|+|+.|+|||||++++.+-..
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~~~   35 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDGAF   35 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCC
Confidence            468999999999999999976543

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.43  E-value=7.7e-05  Score=47.88  Aligned_cols=24  Identities=25%  Similarity=0.281  Sum_probs=20.9

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      -.++|+|+.||||||+.+.|+-.+
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            467899999999999999997654

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.43  E-value=5.6e-05  Score=50.01  Aligned_cols=24  Identities=29%  Similarity=0.378  Sum_probs=21.1

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .+++|+|++||||||+.+.|+-.+
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~~L   28 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAKIL   28 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHH
Confidence            468899999999999999998764

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.42  E-value=6.8e-05  Score=49.27  Aligned_cols=25  Identities=32%  Similarity=0.210  Sum_probs=21.5

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      -+++|.|+.||||||+.+.|+-.+.
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3688999999999999999987543

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.42  E-value=7.2e-05  Score=49.62  Aligned_cols=26  Identities=19%  Similarity=0.243  Sum_probs=22.5

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +..+.|.||+|+|||+|+++|+..+.
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~~~   76 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATETN   76 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            35688999999999999999988764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=97.42  E-value=7.2e-05  Score=46.42  Aligned_cols=23  Identities=26%  Similarity=0.326  Sum_probs=20.0

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+..-.
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~~   31 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKDC   31 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999998753

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.42  E-value=7.8e-05  Score=45.83  Aligned_cols=25  Identities=36%  Similarity=0.545  Sum_probs=21.7

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ..++|+|+.||||||+.+.|+-.+.
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg   32 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALK   32 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC
Confidence            5789999999999999999987543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.42  E-value=6.8e-05  Score=47.71  Aligned_cols=25  Identities=16%  Similarity=0.252  Sum_probs=21.6

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      -.++|+|+.|+|||||+.+|.+-..
T Consensus        13 ~~i~~~G~~g~GKTsl~~~l~~~~~   37 (218)
T 1nrj_B           13 PSIIIAGPQNSGKTSLLTLLTTDSV   37 (218)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4578999999999999999987653

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=97.41  E-value=6e-05  Score=46.19  Aligned_cols=22  Identities=23%  Similarity=0.467  Sum_probs=19.2

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|+.|+|||||++++.+-
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3689999999999999998654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=97.41  E-value=4.9e-05  Score=51.58  Aligned_cols=24  Identities=21%  Similarity=0.230  Sum_probs=21.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++++|+|+.|+|||||+++|.+.
T Consensus        10 ~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A           10 VGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            478999999999999999999875

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.41  E-value=6.4e-05  Score=54.13  Aligned_cols=25  Identities=24%  Similarity=0.283  Sum_probs=21.9

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .-+.|+||+|+|||+|+++|++...
T Consensus        50 ~gvLL~GppGtGKT~Laraia~~~~   74 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAGEAN   74 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC
Confidence            3478999999999999999998764

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=97.41  E-value=5.7e-05  Score=51.21  Aligned_cols=23  Identities=26%  Similarity=0.343  Sum_probs=20.8

Q ss_pred             CceEEEecCCCCcchHHHHHHHh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~   48 (109)
                      ..++|+|++|+|||||+++|.+.
T Consensus         8 g~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            8 GFVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999865

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=97.40  E-value=7.3e-05  Score=46.93  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=20.0

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++++.+-.
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~~   38 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYDE   38 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            47899999999999999997654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.40  E-value=7.7e-05  Score=46.57  Aligned_cols=22  Identities=32%  Similarity=0.404  Sum_probs=19.7

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|+.|+|||||++++.+-
T Consensus        10 ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            4789999999999999999874

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=97.40  E-value=7.7e-05  Score=46.65  Aligned_cols=23  Identities=22%  Similarity=0.278  Sum_probs=20.1

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47899999999999999998654

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=97.40  E-value=7.5e-05  Score=45.88  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=20.0

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            46899999999999999998653

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=97.40  E-value=6.4e-05  Score=49.79  Aligned_cols=22  Identities=27%  Similarity=0.588  Sum_probs=20.0

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|..|+|||||+++|.+.
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4789999999999999999876

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=97.39  E-value=7.7e-05  Score=46.92  Aligned_cols=23  Identities=17%  Similarity=0.329  Sum_probs=20.2

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            46899999999999999998754

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.39  E-value=6.9e-05  Score=47.72  Aligned_cols=24  Identities=25%  Similarity=0.207  Sum_probs=21.1

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      -+++|+|+.||||||+.+.|+-.+
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            468899999999999999998663

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.39  E-value=5.6e-05  Score=46.56  Aligned_cols=26  Identities=19%  Similarity=0.436  Sum_probs=22.2

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ...+.|+||.|+|||+++++++..+.
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~~   68 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKIV   68 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHH
Confidence            35678999999999999999988764

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=97.39  E-value=8e-05  Score=46.36  Aligned_cols=23  Identities=22%  Similarity=0.417  Sum_probs=20.2

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+.+--
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999998654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=97.38  E-value=4.2e-05  Score=52.85  Aligned_cols=25  Identities=24%  Similarity=0.282  Sum_probs=21.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .-.++|+|++|+|||||+++|.+..
T Consensus       167 ~~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          167 IPTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999998754

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=97.38  E-value=8.1e-05  Score=46.35  Aligned_cols=23  Identities=22%  Similarity=0.361  Sum_probs=20.0

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++++.+-.
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47899999999999999998643

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=97.38  E-value=8.5e-05  Score=46.78  Aligned_cols=24  Identities=17%  Similarity=0.101  Sum_probs=20.7

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .++|+|+.|+|||||++++.+-..
T Consensus        26 ki~vvG~~~~GKSsli~~l~~~~~   49 (201)
T 3oes_A           26 KVVILGYRCVGKTSLAHQFVEGEF   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCC
Confidence            478999999999999999987543

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=97.38  E-value=8.2e-05  Score=46.44  Aligned_cols=23  Identities=26%  Similarity=0.177  Sum_probs=19.5

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+..-.
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~~   44 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTGT   44 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999998876643

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.38  E-value=7.8e-05  Score=47.70  Aligned_cols=22  Identities=18%  Similarity=0.080  Sum_probs=19.4

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++|.|+.||||||+.+.|+-.+
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            3 IILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6899999999999999997644

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=97.38  E-value=7.7e-05  Score=52.06  Aligned_cols=23  Identities=30%  Similarity=0.300  Sum_probs=20.7

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|++|+|||||+++|.+.-
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~~   25 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRAN   25 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999999874

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.38  E-value=7.3e-05  Score=50.12  Aligned_cols=22  Identities=27%  Similarity=0.218  Sum_probs=19.6

Q ss_pred             CceEEEecCCCCcchHHHHHHH
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~   47 (109)
                      -+++|+|+.||||||+.+.|.-
T Consensus        76 ~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           76 YVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999973

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=97.37  E-value=8.7e-05  Score=45.71  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=19.7

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+..-.
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~~   29 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTNA   29 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            36899999999999999987543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=97.37  E-value=8.8e-05  Score=45.76  Aligned_cols=22  Identities=36%  Similarity=0.403  Sum_probs=19.5

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|+.|+|||||++.+..-
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4689999999999999999854

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=97.37  E-value=8.7e-05  Score=46.67  Aligned_cols=22  Identities=32%  Similarity=0.415  Sum_probs=19.5

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|++|+|||||+..+.+.
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998864

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=97.37  E-value=7.4e-05  Score=50.05  Aligned_cols=22  Identities=27%  Similarity=0.339  Sum_probs=19.6

Q ss_pred             CceEEEecCCCCcchHHHHHHH
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~   47 (109)
                      .+++|+|++||||||+.+.|+-
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999999985

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=97.36  E-value=7.6e-05  Score=49.04  Aligned_cols=23  Identities=30%  Similarity=0.313  Sum_probs=20.3

Q ss_pred             CceEEEecCCCCcchHHHHHHHh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~   48 (109)
                      -.++|+|+.|+|||||++.|.+-
T Consensus        23 ~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           23 LRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            35789999999999999999864

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=97.36  E-value=9.5e-05  Score=45.52  Aligned_cols=22  Identities=18%  Similarity=0.200  Sum_probs=19.3

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|+.|+|||||++.+..-
T Consensus         8 ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4689999999999999999743

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=97.36  E-value=9e-05  Score=46.11  Aligned_cols=23  Identities=17%  Similarity=0.271  Sum_probs=19.9

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~~   44 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAGR   44 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999987643

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=97.36  E-value=7.4e-05  Score=50.32  Aligned_cols=25  Identities=36%  Similarity=0.234  Sum_probs=22.1

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      -..++|+|+.|+|||||+++|.+.-
T Consensus        24 ~~~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           24 LPQIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHCCC
Confidence            4578999999999999999998764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.36  E-value=9.4e-05  Score=46.98  Aligned_cols=23  Identities=26%  Similarity=0.367  Sum_probs=20.1

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+..-.
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~~   50 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQGL   50 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            47899999999999999987654

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.35  E-value=8.7e-05  Score=55.34  Aligned_cols=32  Identities=25%  Similarity=0.369  Sum_probs=25.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhcc--Ccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSD--ESTSL   56 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~--~~~~~   56 (109)
                      +..++|+|++|+|||||+++|.+....  ..|.+
T Consensus         9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V   42 (665)
T 2dy1_A            9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV   42 (665)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred             CcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence            467899999999999999999987653  34444

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=97.35  E-value=9.8e-05  Score=46.56  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=20.1

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDDT   32 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999998754

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.34  E-value=9.4e-05  Score=50.29  Aligned_cols=25  Identities=28%  Similarity=0.424  Sum_probs=21.9

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ..+.|.||+|+||||++++++..+.
T Consensus        59 ~~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           59 PHMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3488999999999999999988764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.34  E-value=0.0001  Score=46.03  Aligned_cols=23  Identities=22%  Similarity=0.447  Sum_probs=20.3

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            47899999999999999998754

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.34  E-value=8.4e-05  Score=48.73  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=20.4

Q ss_pred             CCceEEEecCCCCcchHHHHHHHh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~   48 (109)
                      +-.++|+|+.||||||+.+.|+--
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~~~   52 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLKKS   52 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            346889999999999999999753

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.34  E-value=0.00011  Score=44.35  Aligned_cols=26  Identities=12%  Similarity=-0.013  Sum_probs=22.3

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +..+.|.||+|+|||++.++|.....
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~~   49 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFGR   49 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhCC
Confidence            45688999999999999999987653

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.34  E-value=0.00011  Score=48.01  Aligned_cols=26  Identities=19%  Similarity=0.286  Sum_probs=22.2

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +..+.|.||.|+|||+++++|+..+.
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~~~   64 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATEAQ   64 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhC
Confidence            34578999999999999999988764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=97.33  E-value=8.5e-05  Score=49.57  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=20.3

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|..|+|||||+++|.+..
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999998753

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=97.33  E-value=9.9e-05  Score=46.05  Aligned_cols=23  Identities=22%  Similarity=0.429  Sum_probs=20.0

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+..--
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47899999999999999998643

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.33  E-value=0.00011  Score=47.74  Aligned_cols=23  Identities=17%  Similarity=0.294  Sum_probs=19.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHH
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~   47 (109)
                      ++.+++.||+||||||++..+..
T Consensus        76 g~~~~i~g~TGsGKTt~~~~~~~   98 (235)
T 3llm_A           76 NSVVIIRGATGCGKTTQVPQFIL   98 (235)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCcHHhHHHHHh
Confidence            68899999999999998776643

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.33  E-value=0.0001  Score=46.54  Aligned_cols=23  Identities=22%  Similarity=0.314  Sum_probs=20.1

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++++.+--
T Consensus        22 ~i~v~G~~~~GKSsli~~l~~~~   44 (213)
T 3cph_A           22 KILLIGDSGVGKSCLLVRFVEDK   44 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            57899999999999999998653

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.32  E-value=0.0001  Score=47.01  Aligned_cols=24  Identities=21%  Similarity=0.151  Sum_probs=21.3

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      ..++|+|+.|+|||||+..|...+
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            468899999999999999998765

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.32  E-value=0.0001  Score=50.92  Aligned_cols=25  Identities=24%  Similarity=0.323  Sum_probs=22.0

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .+++|+||+|||||||...|+-.+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            3688999999999999999988764

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=97.32  E-value=0.00011  Score=45.84  Aligned_cols=23  Identities=30%  Similarity=0.261  Sum_probs=20.0

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        24 ki~v~G~~~~GKSsli~~l~~~~   46 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIASGQ   46 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999998643

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=97.32  E-value=0.00011  Score=45.69  Aligned_cols=23  Identities=22%  Similarity=0.434  Sum_probs=20.2

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++++..-.
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999997654

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=97.32  E-value=0.00011  Score=45.17  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=19.8

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+..-.
T Consensus        10 ki~v~G~~~~GKssl~~~~~~~~   32 (182)
T 3bwd_D           10 KCVTVGDGAVGKTCLLISYTSNT   32 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999997643

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.31  E-value=0.00011  Score=46.05  Aligned_cols=23  Identities=26%  Similarity=0.351  Sum_probs=20.1

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+..--
T Consensus        30 ki~v~G~~~vGKSsli~~l~~~~   52 (196)
T 2atv_A           30 KLAIFGRAGVGKSALVVRFLTKR   52 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            47899999999999999998753

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=97.31  E-value=0.00011  Score=46.26  Aligned_cols=23  Identities=26%  Similarity=0.343  Sum_probs=20.1

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        30 ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           30 KIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            47899999999999999997653

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=97.31  E-value=9e-05  Score=49.10  Aligned_cols=23  Identities=22%  Similarity=0.281  Sum_probs=20.2

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||+++|.+..
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            47899999999999999998753

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=97.31  E-value=9.3e-05  Score=49.35  Aligned_cols=26  Identities=23%  Similarity=0.084  Sum_probs=22.3

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ...++|+|..|+|||||+++|.+.-.
T Consensus        26 ~~~i~vvG~~~~GKSSLln~l~g~~~   51 (299)
T 2aka_B           26 LPQIAVVGGQSAGKSSVLENFVGRDF   51 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHCCCc
Confidence            34689999999999999999987643

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=97.31  E-value=0.00011  Score=45.88  Aligned_cols=23  Identities=30%  Similarity=0.348  Sum_probs=20.3

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=97.30  E-value=9.6e-05  Score=45.74  Aligned_cols=22  Identities=18%  Similarity=0.552  Sum_probs=19.7

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|+.|+|||||++.+.+-
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999864

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.30  E-value=0.0001  Score=45.76  Aligned_cols=22  Identities=18%  Similarity=0.552  Sum_probs=19.5

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|+.|+|||||++.+.+-
T Consensus        18 ~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           18 KVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999853

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=97.30  E-value=9.8e-05  Score=46.40  Aligned_cols=23  Identities=22%  Similarity=0.439  Sum_probs=19.9

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999987653

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.30  E-value=0.00012  Score=46.35  Aligned_cols=23  Identities=26%  Similarity=0.319  Sum_probs=20.2

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+.+--
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            57899999999999999998743

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=97.30  E-value=0.00012  Score=46.56  Aligned_cols=24  Identities=25%  Similarity=0.274  Sum_probs=20.7

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .++|+|+.|+|||||++.+.+-..
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~~~   53 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKDCF   53 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999987543

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.29  E-value=0.00014  Score=49.00  Aligned_cols=26  Identities=19%  Similarity=-0.018  Sum_probs=21.9

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      ..+.|.||+|+|||+|.++|+..+..
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~~l~~   62 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFRKMGI   62 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            45667799999999999999988753

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=97.29  E-value=9.8e-05  Score=46.56  Aligned_cols=22  Identities=27%  Similarity=0.409  Sum_probs=18.8

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4688999999999999998754

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=97.28  E-value=8.1e-05  Score=46.09  Aligned_cols=22  Identities=14%  Similarity=0.253  Sum_probs=19.4

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++++|+.|+|||||++.+.+-
T Consensus        20 ~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           20 RLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998754

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.27  E-value=0.00012  Score=47.04  Aligned_cols=24  Identities=25%  Similarity=0.308  Sum_probs=20.7

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      -.++|+|+.||||||+.+.|+-.+
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            457899999999999999997654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=97.27  E-value=0.00011  Score=48.89  Aligned_cols=20  Identities=35%  Similarity=0.559  Sum_probs=18.1

Q ss_pred             eEEEecCCCCcchHHHHHHH
Q psy16868         28 NVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~   47 (109)
                      ++|+|++|+|||||+++|.+
T Consensus        11 I~vvG~~g~GKSTLin~L~~   30 (274)
T 3t5d_A           11 LMVVGESGLGKSTLINSLFL   30 (274)
T ss_dssp             EEEEECTTSSHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            68999999999999999854

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=97.26  E-value=0.00012  Score=50.98  Aligned_cols=22  Identities=32%  Similarity=0.385  Sum_probs=20.2

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|.+++|||||+++|.+.
T Consensus         4 kI~IVG~pnvGKSTL~n~Lt~~   25 (363)
T 1jal_A            4 KCGIVGLPNVGKSTLFNALTKA   25 (363)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4789999999999999999984

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=97.26  E-value=8.6e-05  Score=45.80  Aligned_cols=22  Identities=23%  Similarity=0.448  Sum_probs=8.8

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|+.|+|||||++.+..-
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3689999999999999998754

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=97.26  E-value=9e-05  Score=46.71  Aligned_cols=22  Identities=27%  Similarity=0.348  Sum_probs=19.2

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|+.|+|||||++.+.+.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5789999999999999998643

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=97.26  E-value=0.00014  Score=45.40  Aligned_cols=23  Identities=26%  Similarity=0.392  Sum_probs=20.0

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+..-.
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~~   45 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTKR   45 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Confidence            47899999999999999987654

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=97.25  E-value=0.00014  Score=45.77  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.2

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+..-.
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~~   49 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKDQ   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            47899999999999999998754

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=97.25  E-value=0.00014  Score=46.14  Aligned_cols=24  Identities=25%  Similarity=0.227  Sum_probs=20.7

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .++|+|+.|+|||||+..+..-..
T Consensus         9 ki~vvG~~~~GKTsli~~l~~~~~   32 (214)
T 2fh5_B            9 AVLFVGLCDSGKTLLFVRLLTGQY   32 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            478999999999999999987543

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.25  E-value=0.0001  Score=52.06  Aligned_cols=25  Identities=32%  Similarity=0.331  Sum_probs=21.3

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +.+++|+|++||||||+.+.|+--+
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhc
Confidence            4678899999999999999986543

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.25  E-value=0.00017  Score=48.35  Aligned_cols=25  Identities=24%  Similarity=0.384  Sum_probs=21.9

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ..+.|+||.|+|||++.++++..+.
T Consensus        68 ~~vll~G~~GtGKT~la~~la~~l~   92 (309)
T 3syl_A           68 LHMSFTGNPGTGKTTVALKMAGLLH   92 (309)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999988774

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=97.24  E-value=9.2e-05  Score=45.46  Aligned_cols=23  Identities=26%  Similarity=0.200  Sum_probs=20.0

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+..-.
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~~   31 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTGS   31 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            36899999999999999998753

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.23  E-value=0.00018  Score=46.31  Aligned_cols=27  Identities=19%  Similarity=0.192  Sum_probs=22.4

Q ss_pred             cCCCCceEEEecCCCCcchHHHHHHHh
Q psy16868         22 PFDKRHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        22 ~~~~~~~~i~G~NG~GKStll~al~~~   48 (109)
                      .+.+..++|+||+|+|||||...|.--
T Consensus        31 ~~~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           31 DIYGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             EETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             EECCEEEEEECCCCCCHHHHHHHHHHh
Confidence            444678899999999999999888654

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.23  E-value=0.00014  Score=49.92  Aligned_cols=25  Identities=20%  Similarity=0.356  Sum_probs=21.7

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .+++|+||+|||||||...|+..+.
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~   30 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALP   30 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3678999999999999999987653

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.23  E-value=0.00016  Score=45.08  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=20.2

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+..-.
T Consensus        20 ki~v~G~~~~GKssli~~l~~~~   42 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYANDA   42 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998653

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=97.23  E-value=0.0001  Score=47.49  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=20.2

Q ss_pred             CceEEEecCCCCcchHHHHHHHh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~   48 (109)
                      -.++|+|+.|+|||||++++.+-
T Consensus        30 ~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           30 KTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35789999999999999999764

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=97.22  E-value=0.00013  Score=45.59  Aligned_cols=22  Identities=18%  Similarity=0.387  Sum_probs=18.7

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|+.|+|||||++.+.+-
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999998654

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.22  E-value=0.00013  Score=50.08  Aligned_cols=25  Identities=20%  Similarity=0.263  Sum_probs=21.5

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .+++|+||+|||||||...|+-.+.
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~~~   28 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKRLN   28 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHhCc
Confidence            4678999999999999999986653

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.21  E-value=0.00019  Score=47.81  Aligned_cols=26  Identities=15%  Similarity=0.344  Sum_probs=22.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +..+.|+||.|+|||+++++|+..+.
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l~   75 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLAN   75 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhC
Confidence            45688999999999999999998774

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=97.21  E-value=0.00014  Score=45.68  Aligned_cols=22  Identities=23%  Similarity=0.240  Sum_probs=19.2

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|+.|+|||||++.+.+-
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~~   43 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFHK   43 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5789999999999999987664

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=97.20  E-value=0.00013  Score=46.42  Aligned_cols=22  Identities=23%  Similarity=0.486  Sum_probs=19.4

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|+.|+|||||++++.+-
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4789999999999999998754

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.20  E-value=0.00017  Score=46.79  Aligned_cols=25  Identities=20%  Similarity=0.234  Sum_probs=21.5

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +..++|+|+.||||||+.+.|+-.+
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3568899999999999999998654

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.20  E-value=0.0002  Score=45.76  Aligned_cols=25  Identities=24%  Similarity=0.138  Sum_probs=21.5

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ..++|+|..|+|||||+..+.....
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~~~   63 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNLK   63 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            4678999999999999999987653

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.20  E-value=8.6e-05  Score=48.89  Aligned_cols=25  Identities=24%  Similarity=0.275  Sum_probs=21.5

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .-+.|.||+|+|||+|+++|+..+.
T Consensus        45 ~~vll~G~~GtGKT~la~~la~~~~   69 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAGEAH   69 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHhC
Confidence            3467899999999999999998764

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.20  E-value=0.00023  Score=50.67  Aligned_cols=25  Identities=24%  Similarity=0.296  Sum_probs=22.6

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .+++|+|++|+||||++..|+..+.
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~l~  124 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARYIQ  124 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5889999999999999999998764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=97.20  E-value=0.00016  Score=46.04  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=19.0

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|+.|+|||||++.+.+-
T Consensus        36 ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999999754

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=97.20  E-value=0.00022  Score=45.56  Aligned_cols=24  Identities=21%  Similarity=0.162  Sum_probs=21.3

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      -+++|+|+.||||||+.+.|+..+
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            468999999999999999998765

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=97.19  E-value=0.00015  Score=47.89  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=20.2

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||+++|.+--
T Consensus        38 ~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           38 TVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998743

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.18  E-value=0.00016  Score=47.04  Aligned_cols=25  Identities=24%  Similarity=0.246  Sum_probs=21.2

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +.++.|+||.||||+|..+.|+--+
T Consensus        29 ~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           29 AKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4578889999999999999887654

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.18  E-value=0.00019  Score=45.10  Aligned_cols=24  Identities=29%  Similarity=0.367  Sum_probs=20.9

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      ..+.|.||.|+|||+++++++..+
T Consensus        39 ~~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           39 PHLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            348899999999999999998765

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=97.17  E-value=0.00013  Score=45.41  Aligned_cols=23  Identities=22%  Similarity=0.341  Sum_probs=20.2

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+.+..
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           23 HVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEECTTSSHHHHHHHTSCGG
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999987654

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=97.17  E-value=0.00023  Score=46.82  Aligned_cols=26  Identities=27%  Similarity=0.355  Sum_probs=23.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +.+++|.|++||||||+++.|.-.+.
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999999977664

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=97.17  E-value=5.3e-05  Score=48.31  Aligned_cols=23  Identities=22%  Similarity=0.215  Sum_probs=20.4

Q ss_pred             CceEEEecCCCCcchHHHHHHHh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~   48 (109)
                      -.++|+|+.|+|||||+++|.+-
T Consensus        30 ~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCC
Confidence            46889999999999999999765

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.17  E-value=0.00018  Score=51.11  Aligned_cols=25  Identities=20%  Similarity=0.260  Sum_probs=21.9

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      -+.|.||.|+|||+|.+||+.-+..
T Consensus       208 GiLL~GPPGtGKT~lakAiA~~~~~  232 (428)
T 4b4t_K          208 GVLLYGPPGTGKTMLVKAVANSTKA  232 (428)
T ss_dssp             EEEEESCTTTTHHHHHHHHHHHHTC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3789999999999999999987653

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=97.17  E-value=0.00018  Score=45.12  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=19.0

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|+.|+|||||++.+..-
T Consensus        22 ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           22 KCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999998754

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=97.17  E-value=0.0002  Score=45.19  Aligned_cols=23  Identities=22%  Similarity=0.203  Sum_probs=19.8

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+..-.
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~~   53 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTGA   53 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhhCC
Confidence            47899999999999999987643

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.17  E-value=0.00018  Score=49.28  Aligned_cols=25  Identities=20%  Similarity=0.272  Sum_probs=22.3

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +..+.|.||.|+||||+++++...+
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            4678899999999999999998766

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.16  E-value=0.00022  Score=49.12  Aligned_cols=26  Identities=27%  Similarity=0.430  Sum_probs=22.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +..+.|.||+|+|||++.++|+..+.
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~~~   76 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARLLD   76 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            46788999999999999999998764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=97.16  E-value=0.00018  Score=45.13  Aligned_cols=21  Identities=19%  Similarity=0.613  Sum_probs=18.7

Q ss_pred             ceEEEecCCCCcchHHHHHHH
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~   47 (109)
                      .++|+|+.|+|||||++.+..
T Consensus        31 ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           31 RILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             EEEEEESTTSSHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            578999999999999999854

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=97.16  E-value=0.00017  Score=44.99  Aligned_cols=24  Identities=21%  Similarity=0.290  Sum_probs=20.5

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      ..++|+|+.|+|||||++.+.+-.
T Consensus        18 ~ki~v~G~~~~GKSsl~~~l~~~~   41 (199)
T 4bas_A           18 LQVVMCGLDNSGKTTIINQVKPAQ   41 (199)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            457899999999999999987643

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.16  E-value=0.00023  Score=48.79  Aligned_cols=26  Identities=23%  Similarity=0.479  Sum_probs=22.9

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      ..+.|.||.|+|||+++++++..+..
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            46889999999999999999988763

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.16  E-value=0.00016  Score=49.47  Aligned_cols=26  Identities=19%  Similarity=0.400  Sum_probs=22.1

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +.+++|+||+|||||||...|+-.+.
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~~   35 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKILP   35 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhCC
Confidence            35788999999999999999986654

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.15  E-value=0.00018  Score=47.55  Aligned_cols=25  Identities=20%  Similarity=0.105  Sum_probs=21.5

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ..+.|.||.|+|||+|.++|+..+.
T Consensus        65 ~~vLl~G~~GtGKT~la~~ia~~~~   89 (272)
T 1d2n_A           65 VSVLLEGPPHSGKTALAAKIAEESN   89 (272)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhC
Confidence            4577889999999999999988754

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=97.14  E-value=0.00018  Score=47.65  Aligned_cols=23  Identities=30%  Similarity=0.300  Sum_probs=20.0

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++++|+.|+|||||+++|.+--
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47789999999999999998643

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=97.13  E-value=0.00023  Score=45.05  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=19.4

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|+.|+|||||+..+..-
T Consensus        32 ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           32 KCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5789999999999999998754

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=97.13  E-value=0.00023  Score=46.49  Aligned_cols=26  Identities=19%  Similarity=0.192  Sum_probs=19.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +.+++|.|+.||||||+++.|.-.+.
T Consensus        25 g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           25 GKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             CCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            56889999999999999999876654

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=97.13  E-value=0.00021  Score=45.76  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=20.1

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~~   37 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKNE   37 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            46899999999999999998654

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.13  E-value=0.00021  Score=50.88  Aligned_cols=26  Identities=19%  Similarity=0.227  Sum_probs=22.4

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      .-+.|.||.|||||+|.+||+.-+..
T Consensus       216 rGvLLyGPPGTGKTllAkAiA~e~~~  241 (434)
T 4b4t_M          216 KGALMYGPPGTGKTLLARACAAQTNA  241 (434)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred             CeeEEECcCCCCHHHHHHHHHHHhCC
Confidence            45788999999999999999987653

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.11  E-value=0.00023  Score=49.16  Aligned_cols=25  Identities=28%  Similarity=0.287  Sum_probs=22.0

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ..++|+|+.|+|||||+..|+..+.
T Consensus        80 ~~I~i~G~~G~GKSTl~~~L~~~l~  104 (355)
T 3p32_A           80 HRVGITGVPGVGKSTAIEALGMHLI  104 (355)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999987763

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.11  E-value=0.00021  Score=47.58  Aligned_cols=24  Identities=21%  Similarity=0.274  Sum_probs=21.1

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .++++|.+|+|||||+++|.+...
T Consensus       101 ~v~~vG~~~vGKSslin~l~~~~~  124 (262)
T 3cnl_A          101 RVLIVGVPNTGKSTIINKLKGKRA  124 (262)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTCC
T ss_pred             heEEeCCCCCCHHHHHHHHhcccc
Confidence            678999999999999999987544

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.11  E-value=0.00019  Score=49.55  Aligned_cols=25  Identities=24%  Similarity=0.429  Sum_probs=22.1

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .+++|+||.|+|||||...|+--+.
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHCC
Confidence            4789999999999999999987664

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=97.10  E-value=0.0003  Score=45.52  Aligned_cols=26  Identities=23%  Similarity=0.266  Sum_probs=22.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +.+++|-|+.||||||+++.|.-.+.
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            56789999999999999999987765

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=97.10  E-value=0.00024  Score=45.92  Aligned_cols=26  Identities=23%  Similarity=0.112  Sum_probs=22.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +.+++|.|+.||||||+++.|.-.+.
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            56788999999999999999977664

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.10  E-value=0.00025  Score=50.68  Aligned_cols=28  Identities=21%  Similarity=0.274  Sum_probs=23.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDE   52 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~   52 (109)
                      +.+++++|++|+||||++..|+..+...
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~  127 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKR  127 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence            4688899999999999999998877543

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.10  E-value=0.00024  Score=50.68  Aligned_cols=27  Identities=19%  Similarity=0.322  Sum_probs=22.9

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhccC
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSDE   52 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~~   52 (109)
                      .=+.|.||.|||||+|.+||+.-+...
T Consensus       216 rGvLL~GPPGtGKTllAkAiA~e~~~~  242 (437)
T 4b4t_L          216 KGVLLYGPPGTGKTLLAKAVAATIGAN  242 (437)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            457789999999999999999876543

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=97.10  E-value=0.00024  Score=45.33  Aligned_cols=23  Identities=22%  Similarity=0.239  Sum_probs=20.1

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+..--
T Consensus        29 ki~vvG~~~vGKSsL~~~l~~~~   51 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVLAKDC   51 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47899999999999999987653

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=97.09  E-value=9.1e-05  Score=46.47  Aligned_cols=22  Identities=27%  Similarity=0.268  Sum_probs=3.9

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|+.|+|||||++++.+-
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4788999999999999998765

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=97.09  E-value=0.00019  Score=46.12  Aligned_cols=21  Identities=29%  Similarity=0.381  Sum_probs=18.9

Q ss_pred             ceEEEecCCCCcchHHHHHHH
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~   47 (109)
                      .++|+|++|+|||||+..+.+
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999999874

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=97.09  E-value=0.00017  Score=44.82  Aligned_cols=20  Identities=15%  Similarity=0.590  Sum_probs=18.1

Q ss_pred             ceEEEecCCCCcchHHHHHH
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQ   46 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~   46 (109)
                      .++++|+.|+|||||++++.
T Consensus        24 ~i~v~G~~~~GKssli~~l~   43 (189)
T 2x77_A           24 RVLMLGLDNAGKTSILYRLH   43 (189)
T ss_dssp             EEEEEEETTSSHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999984

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=97.09  E-value=0.00027  Score=44.71  Aligned_cols=23  Identities=22%  Similarity=0.271  Sum_probs=19.9

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||++.+..-.
T Consensus        11 ki~i~G~~~~GKTsli~~l~~~~   33 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCMLICYTSNK   33 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999987643

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.08  E-value=0.00027  Score=48.18  Aligned_cols=24  Identities=29%  Similarity=0.336  Sum_probs=21.6

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .-+.|.||.|+|||+|+++++..+
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             ceEEEECCCCccHHHHHHHHHHHc
Confidence            457889999999999999999876

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.08  E-value=0.00027  Score=50.33  Aligned_cols=27  Identities=22%  Similarity=0.306  Sum_probs=23.7

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      +++++|.|++|+|||||+..|+.....
T Consensus       203 G~liiI~G~pG~GKTtl~l~ia~~~~~  229 (454)
T 2r6a_A          203 SDLIIVAARPSVGKTAFALNIAQNVAT  229 (454)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            789999999999999999988876653

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.08  E-value=0.00022  Score=48.46  Aligned_cols=25  Identities=24%  Similarity=0.254  Sum_probs=21.8

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .-+.|.||.|+|||+|+++|+..+.
T Consensus        52 ~~vLl~GppGtGKT~la~aia~~~~   76 (322)
T 3eie_A           52 SGILLYGPPGTGKSYLAKAVATEAN   76 (322)
T ss_dssp             CEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHC
Confidence            4578899999999999999988764

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.08  E-value=0.00028  Score=49.87  Aligned_cols=26  Identities=15%  Similarity=0.293  Sum_probs=23.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      |+..+|+|++|+|||||+..|+..+.
T Consensus       174 GQr~~IvG~sG~GKTtLl~~Iar~i~  199 (422)
T 3ice_A          174 GQRGLIVAPPKAGKTMLLQNIAQSIA  199 (422)
T ss_dssp             TCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred             CcEEEEecCCCCChhHHHHHHHHHHh
Confidence            78999999999999999999988764

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.08  E-value=0.00029  Score=47.81  Aligned_cols=25  Identities=32%  Similarity=0.375  Sum_probs=22.1

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ..+.|.||.|+|||+|+.+|+..+.
T Consensus       153 ~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          153 KGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH
Confidence            5678899999999999999988765

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.08  E-value=0.00024  Score=45.70  Aligned_cols=23  Identities=22%  Similarity=0.182  Sum_probs=19.5

Q ss_pred             eEEEecCCCCcchHHHHHHHhhc
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ++|+||.||||+|..+.|+--+.
T Consensus         3 Iil~GpPGsGKgTqa~~La~~~g   25 (206)
T 3sr0_A            3 LVFLGPPGAGKGTQAKRLAKEKG   25 (206)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            57899999999999999876543

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.06  E-value=0.00024  Score=48.89  Aligned_cols=24  Identities=13%  Similarity=0.158  Sum_probs=21.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHHh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~   48 (109)
                      +.++.|.||+|+|||||+..++..
T Consensus       122 G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          122 MAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999988875

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=97.05  E-value=0.00039  Score=50.49  Aligned_cols=26  Identities=31%  Similarity=0.331  Sum_probs=22.0

Q ss_pred             cCC-CCceEEEecCCCCcchHHHHHHH
Q psy16868         22 PFD-KRHNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        22 ~~~-~~~~~i~G~NG~GKStll~al~~   47 (109)
                      ++. ....+|.|++||||||++++|..
T Consensus       163 dL~~~pHlLIaG~TGSGKSt~L~~li~  189 (512)
T 2ius_A          163 DLAKMPHLLVAGTTGSGASVGVNAMIL  189 (512)
T ss_dssp             EGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred             EcccCceEEEECCCCCCHHHHHHHHHH
Confidence            443 57889999999999999999865

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.04  E-value=0.00028  Score=49.82  Aligned_cols=27  Identities=19%  Similarity=0.261  Sum_probs=23.1

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhccC
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSDE   52 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~~   52 (109)
                      .=+.|.||.|+|||.|.+||+.-+...
T Consensus       183 rGvLL~GPPGTGKTllAkAiA~e~~~~  209 (405)
T 4b4t_J          183 KGVILYGPPGTGKTLLARAVAHHTDCK  209 (405)
T ss_dssp             CCEEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred             CceEEeCCCCCCHHHHHHHHHHhhCCC
Confidence            457889999999999999999876543

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=97.03  E-value=0.00027  Score=46.00  Aligned_cols=24  Identities=25%  Similarity=0.289  Sum_probs=21.3

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .+++|.|+.||||||+++.|+-.+
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHc
Confidence            467899999999999999998766

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.03  E-value=0.00036  Score=48.26  Aligned_cols=26  Identities=27%  Similarity=0.392  Sum_probs=22.7

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ...+.|+||.|+|||++.++|+..+.
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~   97 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLD   97 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence            35688999999999999999998774

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.02  E-value=0.00043  Score=46.99  Aligned_cols=26  Identities=27%  Similarity=0.429  Sum_probs=22.3

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      ..+.|.||.|+|||+++++|+..+..
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~~~   81 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEMSA   81 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhCC
Confidence            46889999999999999999877643

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=97.01  E-value=0.00025  Score=48.07  Aligned_cols=28  Identities=14%  Similarity=0.113  Sum_probs=24.2

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDE   52 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~   52 (109)
                      +..+.|.||.|+|||+|+++|+..+...
T Consensus        46 ~~~vll~G~pGtGKT~la~~la~~~~~~   73 (331)
T 2r44_A           46 GGHILLEGVPGLAKTLSVNTLAKTMDLD   73 (331)
T ss_dssp             TCCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            5678899999999999999999877543

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.01  E-value=0.00036  Score=48.16  Aligned_cols=26  Identities=19%  Similarity=0.176  Sum_probs=22.3

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ...+.|.||.|+|||+|+++|+..+.
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~~~~  142 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIASQSG  142 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcC
Confidence            35678999999999999999987754

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=97.01  E-value=0.00048  Score=45.29  Aligned_cols=26  Identities=19%  Similarity=0.470  Sum_probs=22.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +..+.|.||.|+|||++.++|.....
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            46788999999999999999988765

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=97.00  E-value=0.00028  Score=50.35  Aligned_cols=26  Identities=19%  Similarity=0.285  Sum_probs=22.6

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhccC
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLSDE   52 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~~~   52 (109)
                      .+.|.||+|+|||||.++|+..+...
T Consensus        52 ~vLL~GppGtGKTtlAr~ia~~~~~~   77 (447)
T 3pvs_A           52 SMILWGPPGTGKTTLAEVIARYANAD   77 (447)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            47889999999999999999887543

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.99  E-value=0.00039  Score=47.43  Aligned_cols=25  Identities=20%  Similarity=0.378  Sum_probs=22.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +.++.|.|++|+|||||+..++...
T Consensus       107 G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          107 RTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHhHHHHHHHHHH
Confidence            6789999999999999999887653

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.98  E-value=0.00041  Score=47.60  Aligned_cols=25  Identities=28%  Similarity=0.262  Sum_probs=21.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +..+.|.||.|+|||||+++++..+
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            3568899999999999999998765

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.98  E-value=0.00021  Score=43.09  Aligned_cols=25  Identities=12%  Similarity=-0.071  Sum_probs=21.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +..+.|.||.|+|||++.++|....
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~~   51 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKNG   51 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred             CCcEEEECCCCccHHHHHHHHHHhC
Confidence            4568899999999999999987543

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.97  E-value=0.00043  Score=47.78  Aligned_cols=25  Identities=24%  Similarity=0.254  Sum_probs=21.9

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .-+.|.||.|+|||+|.++|+..+.
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~~~  109 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATEAN  109 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHhC
Confidence            3478899999999999999998764

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.97  E-value=0.00047  Score=44.70  Aligned_cols=27  Identities=15%  Similarity=0.139  Sum_probs=23.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      +.+++|.|+.||||||+++.|.-.+..
T Consensus         5 g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            5 GKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            567899999999999999999887754

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=96.96  E-value=0.00046  Score=46.43  Aligned_cols=25  Identities=28%  Similarity=0.456  Sum_probs=21.9

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ..+.|.||.|+|||+++++|+..+.
T Consensus        39 ~~vll~G~~GtGKT~la~~i~~~~~   63 (324)
T 1hqc_A           39 EHLLLFGPPGLGKTTLAHVIAHELG   63 (324)
T ss_dssp             CCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhC
Confidence            5688999999999999999987654

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.96  E-value=0.00039  Score=49.73  Aligned_cols=25  Identities=24%  Similarity=0.420  Sum_probs=21.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      ....+|+||+|+|||++.++|+..+
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHHH
Confidence            3456889999999999999999886

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=96.95  E-value=0.00049  Score=53.13  Aligned_cols=37  Identities=32%  Similarity=0.528  Sum_probs=24.6

Q ss_pred             eEEEEeceeec--CCCeeEecCC-CCceEEEecCCCCcchHH
Q psy16868          4 KQVIIHGFKSY--KEQTVVEPFD-KRHNVVVGRNGSGKSNFF   42 (109)
Q Consensus         4 ~~i~i~n~~~~--~~~~~l~~~~-~~~~~i~G~NG~GKStll   42 (109)
                      +.|.+++-+..  ++.. + ++. +.+++|+|.+|||||||.
T Consensus         2 ~~i~i~gar~hNLkni~-~-~ip~~~l~v~tG~SGSGKSsLa   41 (916)
T 3pih_A            2 NEIVVKGARVHNLKNIT-V-RIPKNRLVVITGVSGSGKSSLA   41 (916)
T ss_dssp             CEEEEESBCSTTCCSBC-C-EEETTSEEEEEESTTSSSHHHH
T ss_pred             CcEEEeCccccccCcce-e-ccCCCcEEEEECCCCCcHHHHH
Confidence            35777765322  2222 2 111 689999999999999994

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=96.95  E-value=8.5e-05  Score=47.26  Aligned_cols=22  Identities=18%  Similarity=0.348  Sum_probs=18.9

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|+.|+|||||+++|.+-
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4689999999999999998743

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=96.94  E-value=0.00052  Score=49.02  Aligned_cols=28  Identities=14%  Similarity=0.310  Sum_probs=24.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDE   52 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~   52 (109)
                      ..-+.|+||+|+||||+.++|+..+...
T Consensus        50 ~~~iLl~GppGtGKT~lar~lA~~l~~~   77 (444)
T 1g41_A           50 PKNILMIGPTGVGKTEIARRLAKLANAP   77 (444)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            3568899999999999999999987643

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.94  E-value=0.00045  Score=43.63  Aligned_cols=26  Identities=27%  Similarity=0.321  Sum_probs=21.5

Q ss_pred             cCCCCceEEEecCCCCcchHHHHHHH
Q psy16868         22 PFDKRHNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        22 ~~~~~~~~i~G~NG~GKStll~al~~   47 (109)
                      .+.+.-++|.|++|+||||+.-++..
T Consensus        13 ~v~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           13 VIDKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             EETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             EECCEEEEEEcCCCCCHHHHHHHHHH
Confidence            45577789999999999999887754

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=96.93  E-value=0.00034  Score=47.53  Aligned_cols=25  Identities=32%  Similarity=0.420  Sum_probs=22.3

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ..+.|.||.|+|||+++++|+..+.
T Consensus        46 ~~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           46 GGVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             ceEEEECCCCccHHHHHHHHHHhCc
Confidence            4588999999999999999998775

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.92  E-value=0.00043  Score=45.13  Aligned_cols=27  Identities=26%  Similarity=0.255  Sum_probs=23.2

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      +.+++|.|+.||||||+.+.|.-.+..
T Consensus        21 ~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           21 SMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            668899999999999999999876543

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.92  E-value=0.00038  Score=49.22  Aligned_cols=25  Identities=24%  Similarity=0.413  Sum_probs=21.5

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .+++|+||+|+|||||...|+-.+.
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~   27 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFN   27 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCC
Confidence            4678999999999999999987654

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.89  E-value=0.00053  Score=43.21  Aligned_cols=24  Identities=21%  Similarity=0.250  Sum_probs=19.2

Q ss_pred             CCceEEEecCCCCcchHH-HHHHHh
Q psy16868         25 KRHNVVVGRNGSGKSNFF-FAIQFV   48 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll-~al~~~   48 (109)
                      +.+.+++||.|+||||++ +.+..+
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHH
Confidence            567889999999999997 555444

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.89  E-value=0.00035  Score=45.26  Aligned_cols=24  Identities=25%  Similarity=0.331  Sum_probs=21.5

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ..+|.||.|+||||+..+|+..+.
T Consensus        60 ~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            578899999999999999988875

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=96.89  E-value=0.00021  Score=50.85  Aligned_cols=24  Identities=38%  Similarity=0.390  Sum_probs=21.1

Q ss_pred             CCceEEEecCCCCcchHHHHHHHh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~   48 (109)
                      ...++|+|++|+|||||+++|.+-
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~   46 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGE   46 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            357899999999999999999764

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=95.92  E-value=0.00016  Score=45.60  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=19.0

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|+.|+|||||++.+..-
T Consensus        32 ki~v~G~~~~GKSsli~~l~~~   53 (204)
T 3th5_A           32 KCVVVGDGAVGKTCLLISYTTN   53 (204)
Confidence            4789999999999999888653

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.86  E-value=0.00052  Score=48.90  Aligned_cols=26  Identities=23%  Similarity=0.285  Sum_probs=22.5

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      .=+.|.||.|+|||+|.+||+.-+..
T Consensus       217 rGvLLyGPPGTGKTlLAkAiA~e~~~  242 (437)
T 4b4t_I          217 KGVILYGAPGTGKTLLAKAVANQTSA  242 (437)
T ss_dssp             SEEEEESSTTTTHHHHHHHHHHHHTC
T ss_pred             CCCceECCCCchHHHHHHHHHHHhCC
Confidence            45788999999999999999987653

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=96.85  E-value=0.00051  Score=49.23  Aligned_cols=23  Identities=30%  Similarity=0.317  Sum_probs=20.6

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.|+|||||+++|.+--
T Consensus       226 kV~ivG~~nvGKSSLln~L~~~~  248 (462)
T 3geh_A          226 KVAIVGRPNVGKSSLLNAWSQSD  248 (462)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCC
Confidence            48899999999999999998863

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=96.85  E-value=0.00058  Score=52.28  Aligned_cols=18  Identities=39%  Similarity=0.486  Sum_probs=17.0

Q ss_pred             CCceEEEecCCCCcchHH
Q psy16868         25 KRHNVVVGRNGSGKSNFF   42 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll   42 (109)
                      +.+++|+|.+|||||||.
T Consensus        36 ~~l~viTGvSGSGKSSLa   53 (842)
T 2vf7_A           36 DALVVFTGVSGSGKSSLA   53 (842)
T ss_dssp             SSEEEEESSTTSSHHHHH
T ss_pred             CCEEEEECCCCCCHHHHH
Confidence            699999999999999995

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.84  E-value=0.00051  Score=48.84  Aligned_cols=24  Identities=29%  Similarity=0.336  Sum_probs=21.6

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .-+.|.||.|+|||+|+++|+..+
T Consensus       168 ~~vLL~GppGtGKT~lA~aia~~~  191 (444)
T 2zan_A          168 RGILLFGPPGTGKSYLAKAVATEA  191 (444)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHc
Confidence            457889999999999999999876

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=96.84  E-value=0.00022  Score=49.14  Aligned_cols=25  Identities=24%  Similarity=0.125  Sum_probs=22.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      ...++|+|..++|||||+++|.+.-
T Consensus        31 ~~~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           31 LPQIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             CCEEEEECBTTSSHHHHHHTTTTSC
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCC
Confidence            4578999999999999999998754

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=96.84  E-value=0.00061  Score=46.58  Aligned_cols=26  Identities=19%  Similarity=0.204  Sum_probs=22.2

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      ..+.|.||.|+||||++++++..+..
T Consensus        39 ~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           39 HAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             SEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            34789999999999999999887653

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=96.83  E-value=0.00043  Score=48.68  Aligned_cols=22  Identities=45%  Similarity=0.534  Sum_probs=18.8

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++|+|.+++|||||+++|.+.-
T Consensus         3 I~ivG~pnvGKSTL~n~L~~~~   24 (397)
T 1wxq_A            3 IGVVGKPNVGKSTFFSAATLVD   24 (397)
T ss_dssp             EEEEECTTSSHHHHHHHHHC--
T ss_pred             EEEECCCCCCHHHHHHHHHCCC
Confidence            6899999999999999998754

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=96.83  E-value=0.00069  Score=52.54  Aligned_cols=37  Identities=30%  Similarity=0.503  Sum_probs=24.5

Q ss_pred             eEEEEeceee--cCCCeeEecCC-CCceEEEecCCCCcchHH
Q psy16868          4 KQVIIHGFKS--YKEQTVVEPFD-KRHNVVVGRNGSGKSNFF   42 (109)
Q Consensus         4 ~~i~i~n~~~--~~~~~~l~~~~-~~~~~i~G~NG~GKStll   42 (109)
                      ..|.+++-+.  .++.. + ++. +.+++|+|.+|||||||.
T Consensus        22 ~~I~i~gar~hNLkni~-v-~iP~~~lvv~tG~SGSGKSSLa   61 (972)
T 2r6f_A           22 DKIIVKGARAHNLKNID-V-EIPRGKLVVLTGLSGSGKSSLA   61 (972)
T ss_dssp             CEEEEEEECSSSCCSEE-E-EEETTSEEEEEESTTSSHHHHH
T ss_pred             ceEEEeccccccCCcee-e-eccCCcEEEEECCCCCCHHHHH
Confidence            3566665532  23323 2 222 689999999999999994

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=96.81  E-value=0.00015  Score=45.51  Aligned_cols=21  Identities=24%  Similarity=0.461  Sum_probs=18.2

Q ss_pred             ceEEEecCCCCcchHHHHHHH
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~   47 (109)
                      .++|+|+.|+|||||++++.+
T Consensus        35 ki~vvG~~~~GKSsli~~l~~   55 (199)
T 3l0i_B           35 KLLLIGDSGVGKSCLLLRFAD   55 (199)
T ss_dssp             EEEEECCTTSCCTTTTTSSBC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            468999999999999988754

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=96.81  E-value=0.00053  Score=46.04  Aligned_cols=23  Identities=17%  Similarity=0.254  Sum_probs=20.3

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++++|.+|+|||||+++|.+..
T Consensus       122 ~v~~vG~~nvGKSsliN~l~~~~  144 (282)
T 1puj_A          122 RALIIGIPNVGKSTLINRLAKKN  144 (282)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             eEEEEecCCCchHHHHHHHhcCc
Confidence            47899999999999999998654

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.80  E-value=0.00047  Score=49.52  Aligned_cols=27  Identities=19%  Similarity=0.180  Sum_probs=22.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      +.-+.|.||.|+|||+|.+||+.-+..
T Consensus       243 prGILLyGPPGTGKTlLAkAiA~e~~~  269 (467)
T 4b4t_H          243 PKGILLYGPPGTGKTLCARAVANRTDA  269 (467)
T ss_dssp             CSEEEECSCTTSSHHHHHHHHHHHHTC
T ss_pred             CCceEeeCCCCCcHHHHHHHHHhccCC
Confidence            345778899999999999999987654

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=96.79  E-value=0.00041  Score=44.23  Aligned_cols=22  Identities=32%  Similarity=0.481  Sum_probs=18.5

Q ss_pred             ceEEEecCCCCcchHHHH-HHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFA-IQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~a-l~~~   48 (109)
                      .++|+|+.|+|||||++. +.+-
T Consensus        17 ki~v~G~~~~GKSsli~~~~~~~   39 (221)
T 3gj0_A           17 KLVLVGDGGTGKTTFVKRHLTGE   39 (221)
T ss_dssp             EEEEEECTTSSHHHHHTTBHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            478999999999999998 4443

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.74  E-value=0.00078  Score=48.71  Aligned_cols=25  Identities=24%  Similarity=0.324  Sum_probs=22.0

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ..+.|.||.|+||||++++++..+.
T Consensus        78 ~~lLL~GppGtGKTtla~~la~~l~  102 (516)
T 1sxj_A           78 RAAMLYGPPGIGKTTAAHLVAQELG  102 (516)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            5688899999999999999988763

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.74  E-value=0.00073  Score=43.33  Aligned_cols=25  Identities=24%  Similarity=0.298  Sum_probs=21.6

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .+++|=|+-||||||+++.|.-.+.
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHH
Confidence            5678889999999999999987663

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=96.73  E-value=0.0008  Score=49.45  Aligned_cols=26  Identities=31%  Similarity=0.330  Sum_probs=23.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ..+.+|.|++|+||||++.+|...+.
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l~  229 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLAE  229 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            57889999999999999999987664

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.73  E-value=0.00072  Score=47.07  Aligned_cols=25  Identities=24%  Similarity=0.291  Sum_probs=21.8

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ..+.|.||.|+|||+|.++|+..+.
T Consensus       149 ~~vLL~GppGtGKT~la~aia~~~~  173 (389)
T 3vfd_A          149 RGLLLFGPPGNGKTMLAKAVAAESN  173 (389)
T ss_dssp             SEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHhhc
Confidence            4678899999999999999987754

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=96.71  E-value=0.00078  Score=45.41  Aligned_cols=24  Identities=21%  Similarity=0.196  Sum_probs=20.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~   48 (109)
                      +..++|.||.|+|||||++.+..-
T Consensus        31 ~~~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           31 YPLTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHH
Confidence            478899999999999999988654

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.71  E-value=0.00028  Score=46.56  Aligned_cols=25  Identities=20%  Similarity=0.295  Sum_probs=21.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +.+++|.|+.||||||+.+.|+-.+
T Consensus        24 ~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           24 IKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4578999999999999999987665

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.69  E-value=0.00071  Score=45.90  Aligned_cols=24  Identities=21%  Similarity=0.230  Sum_probs=21.2

Q ss_pred             CCceEEEecCCCCcchHHHHHHHh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~   48 (109)
                      +.++.|.|++|+|||+|+..++..
T Consensus        98 g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           98 QSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999888753

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.69  E-value=0.001  Score=43.38  Aligned_cols=26  Identities=31%  Similarity=0.285  Sum_probs=22.2

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ..+++++|+.|+||||++..|+..+.
T Consensus        14 ~~i~~~~GkgGvGKTTl~~~La~~l~   39 (262)
T 1yrb_A           14 SMIVVFVGTAGSGKTTLTGEFGRYLE   39 (262)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            35678899999999999999987665

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.69  E-value=0.00093  Score=47.57  Aligned_cols=25  Identities=32%  Similarity=0.496  Sum_probs=22.4

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .-+.|.||.|+|||++.++|+..+.
T Consensus        64 ~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           64 RAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHhC
Confidence            4578899999999999999998876

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.69  E-value=0.001  Score=45.50  Aligned_cols=26  Identities=19%  Similarity=0.192  Sum_probs=22.0

Q ss_pred             cCCCCceEEEecCCCCcchHHHHHHH
Q psy16868         22 PFDKRHNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        22 ~~~~~~~~i~G~NG~GKStll~al~~   47 (109)
                      .+.+.-++|+|++|+||||+..+|..
T Consensus       141 ~~~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          141 DVYGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             EECCEEEEEEeCCCCCHHHHHHHHHh
Confidence            44567789999999999999988876

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=96.67  E-value=0.00068  Score=45.88  Aligned_cols=22  Identities=36%  Similarity=0.424  Sum_probs=19.1

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|+.|+|||||+..+.+-
T Consensus         5 KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            5 KLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             EEEEECCTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4689999999999999997654

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.67  E-value=0.00071  Score=48.70  Aligned_cols=26  Identities=15%  Similarity=0.222  Sum_probs=23.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ++..+|+|++|+|||||+..|.....
T Consensus       151 Gq~~~i~G~sGvGKTtL~~~l~~~~~  176 (473)
T 1sky_E          151 GGKIGLFGGAGVGKTVLIQELIHNIA  176 (473)
T ss_dssp             TCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCccHHHHHHHhhhh
Confidence            78899999999999999999877654

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=96.66  E-value=0.00087  Score=45.24  Aligned_cols=24  Identities=25%  Similarity=0.182  Sum_probs=21.0

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      ..++|.||.|+|||||++.+..-.
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~   54 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINEL   54 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhc
Confidence            578899999999999999987654

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.66  E-value=0.00087  Score=48.61  Aligned_cols=26  Identities=23%  Similarity=0.365  Sum_probs=22.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ...++|+|++|+||||++..|+..+.
T Consensus       101 ~~vI~ivG~~GvGKTTl~~kLA~~l~  126 (504)
T 2j37_W          101 QNVIMFVGLQGSGKTTTCSKLAYYYQ  126 (504)
T ss_dssp             -EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34788999999999999999986654

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=96.64  E-value=0.00075  Score=49.34  Aligned_cols=24  Identities=21%  Similarity=0.250  Sum_probs=21.4

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      ..++|+|..|+|||||+++|.+.-
T Consensus        66 ~~V~vvG~~n~GKSTLIN~Llg~~   89 (550)
T 2qpt_A           66 PMVLVAGQYSTGKTSFIQYLLEQE   89 (550)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCc
Confidence            478999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	109
d1w1wa_	427	c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac	8e-21
g1xew.1	329	c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furi	1e-20
d1e69a_	308	c.37.1.12 (A:) Smc head domain {Thermotoga maritim	2e-20
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	2e-16
d1qhla_	222	c.37.1.12 (A:) Cell division protein MukB {Escheri	1e-13
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	8e-13

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.2 bits (204), Expect = 8e-21
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 5/85 (5%)

Query: 3  IKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSR 62
          +  + +  FKSY+  T V   +     ++G NGSGKSN   AI FVL   S  LR S+  
Sbjct: 3  LVGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLR-SNIL 61

Query: 63 QALLHEGTGPRVVNAYVEIVFDNTD 87
          + L++ G      N      +DN  
Sbjct: 62 KDLIYRGVL----NDENSDDYDNEG 82

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} Length = 308

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 81.2 bits (199), Expect = 2e-20
 Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 3/108 (2%)

Query: 1   MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
           M +K++ + GFKS+   +++  F  R   +VG NGSGKSN   AI++V  ++S     + 
Sbjct: 1   MRLKKLYLKGFKSFGRPSLIG-FSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRAS 59

Query: 61  SRQALLHEGT--GPRVVNAYVEIVFDNTDHRVPGFIRCRSTSVDLYRC 106
            +  ++  G+   P   +AYVE+VF+     +      + T  + Y  
Sbjct: 60  EKFDMIFAGSENLPPAGSAYVELVFEENGEEITVARELKRTGENTYYL 107

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} Length = 222

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

 Score = 62.0 bits (149), Expect = 1e-13
 Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 9/96 (9%)

Query: 1  MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSD 60
             + + +  +  +  +T     D+    + G NG+GKS    A    L  + T L   +
Sbjct: 2  GKFRSLTLINWNGFFARTF--DLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 59

Query: 61 SRQALLHEGTGPRVV-------NAYVEIVFDNTDHR 89
          + +A    G+  + +         Y  +   N+ H+
Sbjct: 60 TTEAGATSGSRDKGLHGKLKAGVCYSMLDTINSRHQ 95

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	109
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.8
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.8
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.79
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	99.78
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.75
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.75
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.74
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.72
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.72
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.72
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.71
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.71
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.71
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.69
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.68
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.67
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.66
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.65
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	99.64
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	99.62
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.61
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.6
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	99.57
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.57
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.45
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.32
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.98
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.39
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.37
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.29
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.29
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.19
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.16
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.12
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.11
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.08
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.07
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.07
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.07
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.06
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.05
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.02
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	98.01
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.99
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.97
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.96
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.95
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.95
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.93
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.93
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.9
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.89
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.87
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.85
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.83
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.82
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.81
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.81
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.81
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.8
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.8
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.79
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.79
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.78
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.78
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.77
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.77
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.76
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.76
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.76
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.76
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.76
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.75
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.75
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.75
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.74
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.74
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.73
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.71
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.71
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.7
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.67
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.66
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.63
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.63
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.63
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.63
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.62
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.61
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.61
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	97.6
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.58
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	97.58
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.58
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.58
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.57
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.56
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.56
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.56
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.55
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.54
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	97.52
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.52
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.52
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.5
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.49
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.48
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.48
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.48
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.48
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	97.47
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.47
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	97.46
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.45
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	97.44
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.44
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	97.43
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.42
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.42
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.41
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.41
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	97.41
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.4
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.39
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.38
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	97.38
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	97.38
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	97.38
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.36
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	97.36
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.36
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	97.34
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.34
d1okkd2	207	GTPase domain of the signal recognition particle r	97.32
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	97.31
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.31
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	97.31
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	97.3
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	97.3
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	97.29
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	97.29
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	97.29
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	97.27
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.26
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	97.26
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.26
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.25
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.25
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	97.24
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	97.23
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	97.23
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.23
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	97.23
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.22
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.22
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.22
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	97.21
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	97.17
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	97.17
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.16
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	97.16
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	97.15
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	97.15
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	97.14
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	97.14
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.13
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	97.13
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	97.12
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	97.11
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	97.1
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	97.1
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	97.09
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.09
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	97.07
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.06
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	97.06
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	97.05
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	97.05
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	97.04
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	97.02
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	97.02
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	97.01
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	97.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.98
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.98
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	96.97
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.96
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.95
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.94
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	96.94
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.93
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.9
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.89
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	96.88
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	96.86
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	96.85
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	96.82
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	96.81
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.81
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.81
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.81
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	96.81
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.78
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.78
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	96.78
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.77
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.76
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.76
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	96.74
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.73
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.73
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.72
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.69
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	96.69
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.69
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	96.67
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.65
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.63
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.62
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.6
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	96.54
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	96.51
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.46
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	96.4
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.18
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	96.03
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.02
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.02
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.97
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.95
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	95.9
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	95.89
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	95.88
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.8
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.8
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	95.79
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.68
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	95.58
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.57
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	95.52
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.52
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	95.41
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	95.33
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.3
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	95.28
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	95.25
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	95.04
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.97
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.82
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	94.65
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.63
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.37
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.19
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	94.03
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	93.95
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	93.78
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	93.57
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	93.56
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	93.38
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	92.9
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.77
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	92.65
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	91.61
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	91.55
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	91.49
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	91.35
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	91.27
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	91.11
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	91.05
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	91.03
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	90.98
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	90.95
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	90.94
d1j6ua3	207	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	90.75
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	89.72
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	89.69
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	89.57
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	89.48
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	89.32
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	89.19
d2jfga3	204	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	89.11
d1p3da3	215	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	87.02
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	86.11
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	85.76
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	82.97
d1khba1	363	Cytosolic phosphoenolpyruvate carboxykinase (GTP-h	82.76

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.80  E-value=6.3e-21  Score=124.53  Aligned_cols=80  Identities=16%  Similarity=0.233  Sum_probs=63.5

Q ss_pred             CeeeEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCce
Q psy16868          1 MYIKQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRV   74 (109)
Q Consensus         1 M~i~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   74 (109)
                      |++..|+++|+ ++|++..++++++     |++++|+||||||||||+++|+|++.|++|.+.+.+...    ...+  +
T Consensus         2 ~~M~~I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i----~~~~--~   75 (239)
T d1v43a3           2 IKMVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV----TYLP--P   75 (239)
T ss_dssp             CCCCCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC----TTSC--G
T ss_pred             cccCeEEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceec----ccCC--c
Confidence            45667999999 8999988887776     899999999999999999999999999999998665421    1111  2


Q ss_pred             eeEEEEEEEecC
Q psy16868         75 VNAYVEIVFDNT   86 (109)
Q Consensus        75 ~~~~i~~~fq~~   86 (109)
                      .++.|+++||++
T Consensus        76 ~~r~ig~v~Q~~   87 (239)
T d1v43a3          76 KDRNISMVFQSY   87 (239)
T ss_dssp             GGGTEEEEEC--
T ss_pred             ccceEEEEeech
Confidence            245699999987

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.80  E-value=8.9e-21  Score=123.92  Aligned_cols=82  Identities=18%  Similarity=0.187  Sum_probs=64.7

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      .|+++|+ +.|++..++++++     |++++|+||||||||||+++|+|++.|++|.+.+.+...............++.
T Consensus         3 ~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~   82 (240)
T d1g2912           3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD   82 (240)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred             cEEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhccccccc
Confidence            5899999 8999988887776     899999999999999999999999999999998666422212122222233567


Q ss_pred             EEEEEecC
Q psy16868         79 VEIVFDNT   86 (109)
Q Consensus        79 i~~~fq~~   86 (109)
                      |+++||++
T Consensus        83 ig~v~Q~~   90 (240)
T d1g2912          83 IAMVFQSY   90 (240)
T ss_dssp             EEEECSCC
T ss_pred             ceecccch
Confidence            99999997

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=3.1e-20  Score=120.82  Aligned_cols=75  Identities=25%  Similarity=0.296  Sum_probs=61.6

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|+ ++|++..++++++     |++++|+||||||||||+++|+|++.|++|.+.+.+...    ...  +..++.|
T Consensus         1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i----~~~--~~~~r~i   74 (232)
T d2awna2           1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRM----NDT--PPAERGV   74 (232)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCC----TTS--CGGGTCE
T ss_pred             CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEC----CCC--chhhcee
Confidence            678999 8999988887776     899999999999999999999999999999998666421    111  1224679


Q ss_pred             EEEEecC
Q psy16868         80 EIVFDNT   86 (109)
Q Consensus        80 ~~~fq~~   86 (109)
                      +++||++
T Consensus        75 g~v~Q~~   81 (232)
T d2awna2          75 GMVFQSY   81 (232)
T ss_dssp             EEECSSC
T ss_pred             eeecccc
Confidence            9999997

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.78  E-value=7.1e-19  Score=117.39  Aligned_cols=104  Identities=30%  Similarity=0.535  Sum_probs=67.8

Q ss_pred             CeeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCC--CCceeeEE
Q psy16868          1 MYIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGT--GPRVVNAY   78 (109)
Q Consensus         1 M~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~   78 (109)
                      |+|++|+++||++|.+...+ +|++.+++|+|||||||||+|+||++++..............+.+....  ........
T Consensus         1 M~I~~i~I~NFksf~~~~~i-~f~~~lnvlvG~NgsGKS~iL~Ai~~~lg~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~   79 (308)
T d1e69a_           1 MRLKKLYLKGFKSFGRPSLI-GFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAY   79 (308)
T ss_dssp             CEEEEEEEESBTTBCSCEEE-ECCSSEEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEE
T ss_pred             CeEEEEEEECeEEECCCEEE-eCCCCeEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccccceecccccccchhhhhh
Confidence            99999999999999887645 8887899999999999999999999988643322110111111222111  12233567


Q ss_pred             EEEEEecCCCCCceeEEEeecceeeee
Q psy16868         79 VEIVFDNTDHRVPGFIRCRSTSVDLYR  105 (109)
Q Consensus        79 i~~~fq~~~~~~~~~~~~~~~~~~~~~  105 (109)
                      +.+.|++.+....+.++......+.|.
T Consensus        80 v~l~~~~~~~e~~i~r~i~~~~~~~~~  106 (308)
T d1e69a_          80 VELVFEENGEEITVARELKRTGENTYY  106 (308)
T ss_dssp             EEEEEESSSCEEEEEEEEETTSCEEEE
T ss_pred             hheeeeccCCcceEEEEEeccCCceEE
Confidence            888898877776666655544444443

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.75  E-value=1e-19  Score=119.96  Aligned_cols=80  Identities=15%  Similarity=0.216  Sum_probs=63.2

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      -|+++|+ ++|+..+++++++     |++++|+||||||||||+++|+|++.|++|.+.+.+...   ....+....+..
T Consensus         4 iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i---~~~~~~~~~~~g   80 (254)
T d1g6ha_           4 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI---TNKEPAELYHYG   80 (254)
T ss_dssp             EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC---TTCCHHHHHHHT
T ss_pred             eEEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEec---cchhHHHHHHhc
Confidence            4899999 8999988888887     899999999999999999999999999999998665421   111111112345


Q ss_pred             EEEEEecCC
Q psy16868         79 VEIVFDNTD   87 (109)
Q Consensus        79 i~~~fq~~~   87 (109)
                      |+++||++.
T Consensus        81 i~~v~Q~~~   89 (254)
T d1g6ha_          81 IVRTFQTPQ   89 (254)
T ss_dssp             EEECCCCCG
T ss_pred             CCccCCccc
Confidence            999999874

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.75  E-value=1e-19  Score=120.15  Aligned_cols=84  Identities=20%  Similarity=0.393  Sum_probs=64.3

Q ss_pred             eEEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCC------
Q psy16868          4 KQVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTG------   71 (109)
Q Consensus         4 ~~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~------   71 (109)
                      ++|+++|+ ++|++.+++++++     |++++|+||||||||||+++|+|++.|++|.+.+.+...........      
T Consensus         1 n~Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~   80 (258)
T d1b0ua_           1 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD   80 (258)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred             CeEEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccccc
Confidence            35899999 8999888888776     89999999999999999999999999999999866542211111100      


Q ss_pred             ---CceeeEEEEEEEecCC
Q psy16868         72 ---PRVVNAYVEIVFDNTD   87 (109)
Q Consensus        72 ---~~~~~~~i~~~fq~~~   87 (109)
                         ....++.|+++||++.
T Consensus        81 ~~~~~~~r~~ig~vfQ~~~   99 (258)
T d1b0ua_          81 KNQLRLLRTRLTMVFQHFN   99 (258)
T ss_dssp             HHHHHHHHHHEEEECSSCC
T ss_pred             HhHHHHHhcceEEEEechh
Confidence               1123456999999974

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.74  E-value=8.8e-20  Score=119.21  Aligned_cols=82  Identities=16%  Similarity=0.215  Sum_probs=61.9

Q ss_pred             EEEEece-eec--CCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSY--KEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~--~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .|+++|+ +.|  ++..++++++     |++++|+||||||||||+++|+|++.|++|.+.+.+....- ......+..+
T Consensus         3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~-~~~~~~~~~r   81 (242)
T d1oxxk2           3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVAS-NGKLIVPPED   81 (242)
T ss_dssp             CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEE-TTEESSCGGG
T ss_pred             EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeec-Cchhhcchhh
Confidence            4899999 889  4455677765     89999999999999999999999999999999866542211 1111122335


Q ss_pred             EEEEEEEecCC
Q psy16868         77 AYVEIVFDNTD   87 (109)
Q Consensus        77 ~~i~~~fq~~~   87 (109)
                      +.|+++||++.
T Consensus        82 r~ig~vfQ~~~   92 (242)
T d1oxxk2          82 RKIGMVFQTWA   92 (242)
T ss_dssp             SCEEEEETTSC
T ss_pred             ccceEEecccc
Confidence            67999999873

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.72  E-value=1.1e-19  Score=118.14  Aligned_cols=82  Identities=16%  Similarity=0.262  Sum_probs=57.5

Q ss_pred             EEEece-eecCCC----eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868          6 VIIHGF-KSYKEQ----TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV   75 (109)
Q Consensus         6 i~i~n~-~~~~~~----~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (109)
                      |+++|+ +.|...    .++++++     |++++|+||||||||||+++|+|++.|++|.+.+.+....-..........
T Consensus         2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r   81 (230)
T d1l2ta_           2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR   81 (230)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred             EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhh
Confidence            678888 777542    2466555     899999999999999999999999999999988655311100000001111


Q ss_pred             eEEEEEEEecCC
Q psy16868         76 NAYVEIVFDNTD   87 (109)
Q Consensus        76 ~~~i~~~fq~~~   87 (109)
                      +..|+++||++.
T Consensus        82 ~~~ig~v~Q~~~   93 (230)
T d1l2ta_          82 RDKIGFVFQQFN   93 (230)
T ss_dssp             HHHEEEECTTCC
T ss_pred             cceEEEEecchh
Confidence            356999999974

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.71  E-value=6.2e-19  Score=114.36  Aligned_cols=74  Identities=16%  Similarity=0.234  Sum_probs=59.2

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |+++|+ ++|++. ++++++     |++++|+||||||||||+++|+|++.|++|.+.+.+...   . .  ....++.|
T Consensus         2 i~v~nlsk~y~~~-aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i---~-~--~~~~~r~i   74 (229)
T d3d31a2           2 IEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDV---T-D--LSPEKHDI   74 (229)
T ss_dssp             EEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEEC---T-T--SCHHHHTC
T ss_pred             EEEEEEEEEeCCE-EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEec---c-c--cchhHhcc
Confidence            688899 889875 476665     899999999999999999999999999999998665421   1 1  12224579


Q ss_pred             EEEEecC
Q psy16868         80 EIVFDNT   86 (109)
Q Consensus        80 ~~~fq~~   86 (109)
                      +++||++
T Consensus        75 g~v~Q~~   81 (229)
T d3d31a2          75 AFVYQNY   81 (229)
T ss_dssp             EEECTTC
T ss_pred             eeecccc
Confidence            9999987

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=2.6e-19  Score=116.93  Aligned_cols=81  Identities=11%  Similarity=0.225  Sum_probs=59.0

Q ss_pred             EEEece-eecCCC----eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868          6 VIIHGF-KSYKEQ----TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV   75 (109)
Q Consensus         6 i~i~n~-~~~~~~----~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (109)
                      |+++|+ +.|...    +++++++     |++++|+||||||||||+++|+|++.|++|.+.+.+.... ..........
T Consensus         2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~-~~~~~~~~~~   80 (240)
T d3dhwc1           2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT-TLSESELTKA   80 (240)
T ss_dssp             EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEEC-TTCHHHHHHH
T ss_pred             EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEee-eCChhhhhhh
Confidence            678888 778653    4566665     8999999999999999999999999999999986653211 0011111122


Q ss_pred             eEEEEEEEecCC
Q psy16868         76 NAYVEIVFDNTD   87 (109)
Q Consensus        76 ~~~i~~~fq~~~   87 (109)
                      ++.|+++||++.
T Consensus        81 rr~ig~VfQ~~~   92 (240)
T d3dhwc1          81 RRQIGMIFQHFN   92 (240)
T ss_dssp             HHHEEECCSSCC
T ss_pred             hccccccccccc
Confidence            356999999974

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.71  E-value=6.8e-19  Score=115.09  Aligned_cols=79  Identities=13%  Similarity=0.196  Sum_probs=60.5

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      -|+++|+ ++|++..++++++     |++++|+||||||||||+++|+|++.|++|.+.+.+...  . ........+..
T Consensus         6 ~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i--~-~~~~~~~~r~g   82 (240)
T d1ji0a_           6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDI--T-NKPAHVINRMG   82 (240)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC--T-TCCHHHHHHTT
T ss_pred             EEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEeccccc--c-cccHHHHHHhc
Confidence            5899999 8999888888777     899999999999999999999999999999998665311  1 11111111234


Q ss_pred             EEEEEecC
Q psy16868         79 VEIVFDNT   86 (109)
Q Consensus        79 i~~~fq~~   86 (109)
                      |+++||+.
T Consensus        83 i~~~~q~~   90 (240)
T d1ji0a_          83 IALVPEGR   90 (240)
T ss_dssp             EEEECSSC
T ss_pred             ccccCccc
Confidence            77888765

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.69  E-value=1.7e-18  Score=113.34  Aligned_cols=78  Identities=10%  Similarity=0.193  Sum_probs=60.5

Q ss_pred             EEEece-eecCC-CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          6 VIIHGF-KSYKE-QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         6 i~i~n~-~~~~~-~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      |+++|+ .+|.+ ..++++++     |++++|+||||||||||+++|+|++.|+.|.+.+++...    ........+..
T Consensus         2 le~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i----~~~~~~~~r~~   77 (242)
T d1mv5a_           2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPI----DNISLENWRSQ   77 (242)
T ss_dssp             EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEES----TTTSCSCCTTT
T ss_pred             EEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEe----ccccHHHHHhh
Confidence            678888 77855 45677776     899999999999999999999999999999998665321    22222333567


Q ss_pred             EEEEEecCC
Q psy16868         79 VEIVFDNTD   87 (109)
Q Consensus        79 i~~~fq~~~   87 (109)
                      |+++||++.
T Consensus        78 i~~v~Q~~~   86 (242)
T d1mv5a_          78 IGFVSQDSA   86 (242)
T ss_dssp             CCEECCSSC
T ss_pred             eEEEccccc
Confidence            999999873

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.68  E-value=2.3e-18  Score=112.39  Aligned_cols=76  Identities=16%  Similarity=0.291  Sum_probs=61.4

Q ss_pred             EEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEE
Q psy16868          6 VIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYV   79 (109)
Q Consensus         6 i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (109)
                      |.++|+ ++|++.+++++++     |++++|+||||||||||+++|+|++.|+.|.+.+.+..  .. .  .....++.+
T Consensus         3 I~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~--i~-~--~~~~~~~~i   77 (238)
T d1vpla_           3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKN--VV-E--EPHEVRKLI   77 (238)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE--TT-T--CHHHHHTTE
T ss_pred             EEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEe--cc-c--ChHHHHhhE
Confidence            789999 8999998888776     89999999999999999999999999999998865531  11 1  112234569


Q ss_pred             EEEEecC
Q psy16868         80 EIVFDNT   86 (109)
Q Consensus        80 ~~~fq~~   86 (109)
                      +++||.+
T Consensus        78 ~~vpq~~   84 (238)
T d1vpla_          78 SYLPEEA   84 (238)
T ss_dssp             EEECTTC
T ss_pred             eEeeecc
Confidence            9999975

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.67  E-value=8.1e-18  Score=107.30  Aligned_cols=72  Identities=17%  Similarity=0.192  Sum_probs=56.8

Q ss_pred             EEEEece-eecCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEE
Q psy16868          5 QVIIHGF-KSYKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAY   78 (109)
Q Consensus         5 ~i~i~n~-~~~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (109)
                      +|+++|+ +.|. ..++++++     |++++|+||||||||||+++|+|++.|..|.+.+++...         ...+..
T Consensus         2 ~lev~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i---------~~~~~~   71 (200)
T d1sgwa_           2 KLEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPI---------TKVKGK   71 (200)
T ss_dssp             EEEEEEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEG---------GGGGGG
T ss_pred             eEEEEEEEEEeC-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEeh---------hHhcCc
Confidence            6899999 7885 46677776     899999999999999999999999999999988655321         112345


Q ss_pred             EEEEEecC
Q psy16868         79 VEIVFDNT   86 (109)
Q Consensus        79 i~~~fq~~   86 (109)
                      +.+++|+.
T Consensus        72 i~~~~~~~   79 (200)
T d1sgwa_          72 IFFLPEEI   79 (200)
T ss_dssp             EEEECSSC
T ss_pred             EEEEeecc
Confidence            77777764

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=8.5e-18  Score=109.87  Aligned_cols=78  Identities=21%  Similarity=0.284  Sum_probs=60.6

Q ss_pred             EEEEece-eecCC--CeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKE--QTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~--~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .|+++|+ .+|.+  ..++++++     |+.++|+||||||||||+++|.|++.|+.|.+.+++..    .........+
T Consensus         1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~----i~~~~~~~lr   76 (241)
T d2pmka1           1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHD----LALADPNWLR   76 (241)
T ss_dssp             EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE----TTTSCHHHHH
T ss_pred             CeEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEE----ecccchhhhh
Confidence            3788998 78843  34677776     89999999999999999999999999999999865531    1222223345


Q ss_pred             EEEEEEEecC
Q psy16868         77 AYVEIVFDNT   86 (109)
Q Consensus        77 ~~i~~~fq~~   86 (109)
                      ..|+++||++
T Consensus        77 ~~i~~v~Q~~   86 (241)
T d2pmka1          77 RQVGVVLQDN   86 (241)
T ss_dssp             HHEEEECSSC
T ss_pred             ceEEEEeccc
Confidence            6799999987

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=8.2e-18  Score=110.55  Aligned_cols=79  Identities=20%  Similarity=0.203  Sum_probs=61.0

Q ss_pred             EEEEece-eecCCC---eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCcee
Q psy16868          5 QVIIHGF-KSYKEQ---TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVV   75 (109)
Q Consensus         5 ~i~i~n~-~~~~~~---~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (109)
                      .|+++|+ .+|.+.   .++++++     |++++|+||||||||||+++|.+++.|..|.+.+++...    ........
T Consensus        11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i----~~~~~~~~   86 (251)
T d1jj7a_          11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPL----PQYEHRYL   86 (251)
T ss_dssp             CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEG----GGBCHHHH
T ss_pred             eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEec----chhhhHHH
Confidence            5899999 788542   3567666     899999999999999999999999999999998665321    11122233


Q ss_pred             eEEEEEEEecCC
Q psy16868         76 NAYVEIVFDNTD   87 (109)
Q Consensus        76 ~~~i~~~fq~~~   87 (109)
                      +..|+++||++.
T Consensus        87 r~~i~~v~Q~~~   98 (251)
T d1jj7a_          87 HRQVAAVGQEPQ   98 (251)
T ss_dssp             HHHEEEECSSCC
T ss_pred             HHHhhhcccccc
Confidence            567999999974

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=3.6e-16  Score=107.42  Aligned_cols=49  Identities=41%  Similarity=0.599  Sum_probs=42.8

Q ss_pred             eeeEEEEeceeecCCCeeEecCC-CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868          2 YIKQVIIHGFKSYKEQTVVEPFD-KRHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus         2 ~i~~i~i~n~~~~~~~~~l~~~~-~~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      +|.+|++.||++|.+.+.+ +|. +++++|+|||||||||+|+||++++..
T Consensus         2 ki~~l~l~NFks~~~~~~i-~f~~~~l~~i~G~NGsGKS~ileAi~~~lg~   51 (427)
T d1w1wa_           2 RLVGLELSNFKSYRGVTKV-GFGESNFTSIIGPNGSGKSNMMDAISFVLGV   51 (427)
T ss_dssp             CEEEEEEESCSSCCSEEEE-ECTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             eEEEEEEeCeeeeCCCEEE-eCCCCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5789999999999876656 564 789999999999999999999998854

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.61  E-value=4e-17  Score=107.35  Aligned_cols=79  Identities=16%  Similarity=0.201  Sum_probs=60.8

Q ss_pred             EEEEece-eecCCC--eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKEQ--TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~~--~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .|+++|+ ..|...  .++++++     +++++|+||||||||||+++|+|++.|+.|.+.+++...    ........+
T Consensus        13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i----~~~~~~~~r   88 (253)
T d3b60a1          13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDL----REYTLASLR   88 (253)
T ss_dssp             CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEET----TTBCHHHHH
T ss_pred             EEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCccc----chhhhhhhh
Confidence            5889998 778643  3567666     899999999999999999999999999999998665321    122222335


Q ss_pred             EEEEEEEecCC
Q psy16868         77 AYVEIVFDNTD   87 (109)
Q Consensus        77 ~~i~~~fq~~~   87 (109)
                      ..|++++|++.
T Consensus        89 ~~i~~v~Q~~~   99 (253)
T d3b60a1          89 NQVALVSQNVH   99 (253)
T ss_dssp             HTEEEECSSCC
T ss_pred             heEEEEeeccc
Confidence            66999999874

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.60  E-value=6.7e-17  Score=105.26  Aligned_cols=67  Identities=16%  Similarity=0.174  Sum_probs=50.6

Q ss_pred             eecCCCeeEecC----CCCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868         12 KSYKEQTVVEPF----DKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT   86 (109)
Q Consensus        12 ~~~~~~~~l~~~----~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~   86 (109)
                      +.|++.. + ++    .+++++|+||||||||||+++|+|++.|+.|.+.+.+...    ....  +.++.|+++||++
T Consensus         9 k~~g~~~-~-~vs~~~~~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i----~~~~--~~~r~ig~v~Q~~   79 (240)
T d2onka1           9 KRLGNFR-L-NVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI----TPLP--PERRGIGFVPQDY   79 (240)
T ss_dssp             EEETTEE-E-EEEEEECSSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC----TTSC--TTTSCCBCCCSSC
T ss_pred             EEECCEE-E-EEEEEeCCEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEEC----CcCC--HHHcCceeeccch
Confidence            6666654 2 33    2579999999999999999999999999999998766422    1111  1246799999986

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=1.1e-16  Score=99.85  Aligned_cols=51  Identities=22%  Similarity=0.329  Sum_probs=45.1

Q ss_pred             eeeEEEEeceeecCCCeeEecCCCCceEEEecCCCCcchHHHHHHHhhccCcc
Q psy16868          2 YIKQVIIHGFKSYKEQTVVEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDEST   54 (109)
Q Consensus         2 ~i~~i~i~n~~~~~~~~~l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~   54 (109)
                      +|++|++.||+.|.+.+ + +|++++++|+|+|||||||+|+||.+++.+...
T Consensus         3 kl~~l~l~Nf~~~~~~~-i-~f~~~~tvi~G~NGsGKStil~Ai~~~L~g~~~   53 (222)
T d1qhla_           3 KFRSLTLINWNGFFART-F-DLDELVTTLSGGNGAGKSTTMAAFVTALIPDLT   53 (222)
T ss_dssp             EEEEEEEEEETTEEEEE-E-CHHHHHHHHHSCCSHHHHHHHHHHHHHHSCCTT
T ss_pred             eeeEEEEECccCEeeEE-E-EcCCCeEEEECCCCCCHHHHHHHHHHHhcCCcc
Confidence            58899999999998766 6 887789999999999999999999999876543

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.57  E-value=5.9e-17  Score=106.59  Aligned_cols=78  Identities=14%  Similarity=0.194  Sum_probs=60.6

Q ss_pred             EEEEece-eecCCC--eeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceee
Q psy16868          5 QVIIHGF-KSYKEQ--TVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVN   76 (109)
Q Consensus         5 ~i~i~n~-~~~~~~--~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (109)
                      .|+++|+ .+|.+.  .++++++     |++++|+||||||||||+++|.|++.|..|.+.+++...    ........+
T Consensus        16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i----~~~~~~~lr   91 (255)
T d2hyda1          16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNI----KDFLTGSLR   91 (255)
T ss_dssp             CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEG----GGSCHHHHH
T ss_pred             EEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEc----ccCCHHHhh
Confidence            4889998 778553  4677666     899999999999999999999999999999998655321    112223345


Q ss_pred             EEEEEEEecC
Q psy16868         77 AYVEIVFDNT   86 (109)
Q Consensus        77 ~~i~~~fq~~   86 (109)
                      ..|++++|++
T Consensus        92 ~~i~~v~Q~~  101 (255)
T d2hyda1          92 NQIGLVQQDN  101 (255)
T ss_dssp             HTEEEECSSC
T ss_pred             heeeeeeccc
Confidence            7799999986

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=1.2e-14  Score=96.58  Aligned_cols=56  Identities=20%  Similarity=0.283  Sum_probs=45.9

Q ss_pred             cCCCeeEecCC-----CCceEEEecCCCCcchHHHHHHHhhccCcccccccchhhhhhhcCCCCceeeEEEEEEEecC
Q psy16868         14 YKEQTVVEPFD-----KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDSRQALLHEGTGPRVVNAYVEIVFDNT   86 (109)
Q Consensus        14 ~~~~~~l~~~~-----~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~fq~~   86 (109)
                      +....++++++     |++++|+||||||||||+++|+|++.|+.|.+.+.+                 +|++++|++
T Consensus        46 ~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-----------------~i~~v~Q~~  106 (281)
T d1r0wa_          46 LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-----------------RVSFCSQFS  106 (281)
T ss_dssp             HTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-----------------CEEEECSSC
T ss_pred             CCCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-----------------EEEEEeccc
Confidence            34455677666     899999999999999999999999999999877332                 378888875

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=1.5e-13  Score=89.01  Aligned_cols=55  Identities=18%  Similarity=0.203  Sum_probs=39.1

Q ss_pred             EEEece-eecCCCee-EecCCCCceEEEecCCCCcchHHHHHHHhhccCcccccccch
Q psy16868          6 VIIHGF-KSYKEQTV-VEPFDKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLRHSDS   61 (109)
Q Consensus         6 i~i~n~-~~~~~~~~-l~~~~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~~~~~   61 (109)
                      ++++|+ .++.=..+ +.--.|++++|+||||||||||+++|+|+. +..|.+.+.++
T Consensus         4 l~~~dv~~~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~   60 (231)
T d1l7vc_           4 MQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQ   60 (231)
T ss_dssp             EEEEEECCTTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSS
T ss_pred             EEEECcccCceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCE
Confidence            677777 44421111 211129999999999999999999999965 57788876553

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.98  E-value=7.9e-11  Score=72.06  Aligned_cols=30  Identities=20%  Similarity=0.318  Sum_probs=27.4

Q ss_pred             eEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      ++|+||||||||||+++|++.+.+..|.+.
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~   32 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGKRAIGFW   32 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCCCcceEE
Confidence            689999999999999999999998877765

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=6.4e-08  Score=58.05  Aligned_cols=27  Identities=15%  Similarity=0.198  Sum_probs=23.0

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhccC
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSDE   52 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~~   52 (109)
                      .+++|+|++|||||||++.|...+...
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l~~~   29 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPALCAR   29 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence            468999999999999999998776543

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=8.9e-08  Score=57.80  Aligned_cols=29  Identities=28%  Similarity=0.452  Sum_probs=24.6

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhccCcc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSDEST   54 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~~~~   54 (109)
                      ..+.|+||+|+|||||++++...+.....
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~   30 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSGV   30 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTTC
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCCC
Confidence            46789999999999999999988865543

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.29  E-value=1.4e-07  Score=57.92  Aligned_cols=25  Identities=24%  Similarity=0.280  Sum_probs=21.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      |.+++|+||+|||||||++.|.--.
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            5788999999999999999986543

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.29  E-value=1.4e-07  Score=56.84  Aligned_cols=28  Identities=25%  Similarity=0.274  Sum_probs=23.8

Q ss_pred             CCCCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         23 FDKRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        23 ~~~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ..|.+++|.|++||||||+.++|+..+.
T Consensus         2 ~~g~iI~l~G~~GsGKSTia~~La~~lg   29 (176)
T d1zp6a1           2 LGGNILLLSGHPGSGKSTIAEALANLPG   29 (176)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3467899999999999999999986553

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.19  E-value=3.4e-07  Score=55.16  Aligned_cols=26  Identities=27%  Similarity=0.166  Sum_probs=22.7

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhccC
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLSDE   52 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~~~   52 (109)
                      +++|+|++|||||||++.|...+...
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~~~   28 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAVRE   28 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence            57899999999999999998877644

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.16  E-value=2.6e-07  Score=55.69  Aligned_cols=25  Identities=24%  Similarity=0.392  Sum_probs=22.3

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ..++|+|+.|||||||.++|+-.+.
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            6789999999999999999987654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.12  E-value=8.1e-07  Score=53.19  Aligned_cols=27  Identities=30%  Similarity=0.438  Sum_probs=23.7

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      ..+++|.|++||||||+.++|+-.+..
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~   29 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPE   29 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            467889999999999999999988753

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=5.5e-07  Score=53.98  Aligned_cols=26  Identities=31%  Similarity=0.392  Sum_probs=23.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +.+++|+|++||||||+.++|+.-+.
T Consensus         6 ~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           6 HHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            56788999999999999999988764

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.08  E-value=9.2e-07  Score=52.14  Aligned_cols=25  Identities=32%  Similarity=0.373  Sum_probs=21.8

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ..++|+||+||||||+.++|+-.+.
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4578999999999999999988764

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.07  E-value=6.9e-07  Score=53.42  Aligned_cols=23  Identities=17%  Similarity=0.210  Sum_probs=20.0

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|++||||||+.++|+--+
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            46799999999999999997654

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.07  E-value=6.5e-07  Score=52.76  Aligned_cols=22  Identities=27%  Similarity=0.339  Sum_probs=18.8

Q ss_pred             CceEEEecCCCCcchHHHHHHH
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~   47 (109)
                      .+++|.|++||||||+.+.|.-
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4678899999999999998753

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.07  E-value=8e-07  Score=52.98  Aligned_cols=25  Identities=24%  Similarity=0.341  Sum_probs=21.7

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .+++|+||+||||||+.+.|+-.+.
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4678999999999999999987654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.06  E-value=5.7e-07  Score=57.32  Aligned_cols=33  Identities=24%  Similarity=0.300  Sum_probs=24.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      +..++++|++|+|||||+++|.+-..-..+.++
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs  127 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS  127 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred             CCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence            788999999999999999999765544444443

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.05  E-value=1.2e-06  Score=52.77  Aligned_cols=26  Identities=23%  Similarity=0.126  Sum_probs=22.6

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      .+++|.|++||||||+++.|+-.+..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~   27 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRK   27 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999876643

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.02  E-value=1.1e-06  Score=53.61  Aligned_cols=24  Identities=21%  Similarity=0.152  Sum_probs=21.0

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +++|.|+.|||||||.+.|.-.+.
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            578999999999999999987654

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=1.1e-06  Score=55.06  Aligned_cols=24  Identities=25%  Similarity=0.317  Sum_probs=21.1

Q ss_pred             CCceEEEecCCCCcchHHHHHHHh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~   48 (109)
                      |.+++|+||+|+|||||++.|.--
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhh
Confidence            568899999999999999988654

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.99  E-value=1.2e-06  Score=52.48  Aligned_cols=25  Identities=24%  Similarity=0.341  Sum_probs=21.1

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      -.++|+|++||||||+.++|+--+.
T Consensus         6 ~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           6 INILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHhC
Confidence            3578899999999999999976553

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.97  E-value=1.5e-06  Score=52.08  Aligned_cols=26  Identities=27%  Similarity=0.234  Sum_probs=22.2

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      |-++.|+|++||||||+.++|+-.+.
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            45677999999999999999987664

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.96  E-value=1.6e-06  Score=53.22  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=20.2

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      ..++|+||+|||||||++.|.--.
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhC
Confidence            357899999999999999986543

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.95  E-value=2e-06  Score=54.95  Aligned_cols=29  Identities=24%  Similarity=0.194  Sum_probs=24.2

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccCc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDES   53 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~~   53 (109)
                      +..+.|+||+|||||||.++|+.-+....
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~~~~~~   60 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEETQGNV   60 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHTTTCC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhhcce
Confidence            34578999999999999999999876543

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.8e-06  Score=52.92  Aligned_cols=23  Identities=17%  Similarity=0.316  Sum_probs=20.2

Q ss_pred             CceEEEecCCCCcchHHHHHHHh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~   48 (109)
                      .+++|+||+|+|||||++.|.--
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999988743

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.93  E-value=1.9e-06  Score=53.14  Aligned_cols=23  Identities=26%  Similarity=0.317  Sum_probs=19.7

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+||+|||||||++.|.--.
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHhC
Confidence            46899999999999999986543

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.93  E-value=2e-06  Score=54.16  Aligned_cols=23  Identities=35%  Similarity=0.342  Sum_probs=20.0

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +++|+|+.|||||||++.|...+
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Confidence            47899999999999999997644

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.90  E-value=4.2e-07  Score=58.18  Aligned_cols=34  Identities=26%  Similarity=0.421  Sum_probs=22.0

Q ss_pred             CCCceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868         24 DKRHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus        24 ~~~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      .+..++|+|++|+|||||+++|.+-..-..+.++
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs  129 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS  129 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence            4788999999999999999999876555555554

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.89  E-value=2.2e-06  Score=52.61  Aligned_cols=25  Identities=28%  Similarity=0.234  Sum_probs=21.2

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +.+++|+||.||||||+.+.|+--+
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3578999999999999999997654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.87  E-value=2.5e-06  Score=52.38  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=20.2

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|+.|+|||||+++|.+.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            5899999999999999999864

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.85  E-value=2.8e-06  Score=51.42  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=19.6

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|+.++|||||+++|.+-
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3689999999999999999764

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.83  E-value=3.5e-06  Score=50.88  Aligned_cols=24  Identities=29%  Similarity=0.470  Sum_probs=21.2

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +++|.|++||||||+.+.|+-.+.
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            567889999999999999987775

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.82  E-value=4e-06  Score=53.29  Aligned_cols=26  Identities=23%  Similarity=0.383  Sum_probs=22.5

Q ss_pred             CCCceEEEecCCCCcchHHHHHHHhh
Q psy16868         24 DKRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        24 ~~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +.++.+|.|||.+||||+|+.++.+.
T Consensus        34 ~~~~~iiTGpN~~GKSt~lk~i~l~~   59 (224)
T d1ewqa2          34 AHELVLITGPNMAGKSTFLRQTALIA   59 (224)
T ss_dssp             SSCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCccccchhhhhhHHHH
Confidence            35688999999999999999987664

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.81  E-value=4.1e-06  Score=51.60  Aligned_cols=24  Identities=17%  Similarity=0.277  Sum_probs=21.2

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      ..++|+|+.++|||||+++|.+--
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            467999999999999999998754

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.81  E-value=4.2e-06  Score=49.51  Aligned_cols=22  Identities=23%  Similarity=0.561  Sum_probs=19.6

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++|+|+.|+|||||++++.+--
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999987653

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.81  E-value=4.4e-06  Score=49.04  Aligned_cols=23  Identities=13%  Similarity=0.299  Sum_probs=20.1

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|++++|||||+..|.+--
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999988743

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=4.6e-06  Score=51.89  Aligned_cols=24  Identities=33%  Similarity=0.263  Sum_probs=21.0

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +++|.|+.||||||+.++|.-.+.
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            578999999999999999977664

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.80  E-value=4.7e-06  Score=49.01  Aligned_cols=23  Identities=17%  Similarity=0.437  Sum_probs=19.8

Q ss_pred             eEEEecCCCCcchHHHHHHHhhc
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ++|+|+.|+|||||++.+.+--.
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~~~   25 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLGEI   25 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhcCCC
Confidence            57999999999999999976543

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.79  E-value=3.9e-06  Score=50.41  Aligned_cols=22  Identities=18%  Similarity=0.348  Sum_probs=19.4

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|++|+|||||+++|.+-
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999998654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=5.3e-06  Score=53.01  Aligned_cols=25  Identities=24%  Similarity=0.462  Sum_probs=21.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      ..+.+|.|||.+||||+|++++...
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l~~   65 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTALIA   65 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHHHH
Confidence            4578899999999999999997664

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.78  E-value=5e-06  Score=50.87  Aligned_cols=25  Identities=20%  Similarity=0.158  Sum_probs=21.0

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      -.++|+||.||||||+.+.|+--+.
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~~~   28 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTKYQ   28 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHC
Confidence            3578999999999999999976553

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.78  E-value=6.8e-06  Score=49.28  Aligned_cols=25  Identities=36%  Similarity=0.383  Sum_probs=21.3

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +.++|+|+.||||||+-++|+--+.
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhC
Confidence            3467889999999999999987765

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=3.7e-06  Score=50.67  Aligned_cols=23  Identities=26%  Similarity=0.291  Sum_probs=20.6

Q ss_pred             CceEEEecCCCCcchHHHHHHHh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~   48 (109)
                      ++++|+|..++|||||+++|.+.
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            45789999999999999999874

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=4.8e-06  Score=49.35  Aligned_cols=21  Identities=33%  Similarity=0.444  Sum_probs=19.2

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++|+|+.++|||||+++|.+.
T Consensus         4 I~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999999865

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.76  E-value=6.6e-06  Score=49.57  Aligned_cols=25  Identities=20%  Similarity=0.234  Sum_probs=21.1

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +.++|+|++||||||+-+.|+-.+.
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg   27 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALG   27 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhC
Confidence            4567899999999999999986654

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.76  E-value=4.3e-06  Score=50.29  Aligned_cols=22  Identities=32%  Similarity=0.454  Sum_probs=19.2

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|+.|+|||||+++|.+-
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999764

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=5.2e-06  Score=50.47  Aligned_cols=23  Identities=35%  Similarity=0.391  Sum_probs=20.2

Q ss_pred             CCceEEEecCCCCcchHHHHHHH
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~   47 (109)
                      +.+++++|++||||||+.+.+.-
T Consensus        14 p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          14 PEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999988753

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.76  E-value=6.3e-06  Score=49.38  Aligned_cols=23  Identities=39%  Similarity=0.379  Sum_probs=20.4

Q ss_pred             eEEEecCCCCcchHHHHHHHhhc
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ++|+|++||||||+.++|+--+.
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~   25 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLD   25 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            67889999999999999987764

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.76  E-value=6.7e-06  Score=52.15  Aligned_cols=26  Identities=23%  Similarity=0.276  Sum_probs=22.7

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      ....|.||+|+||||++++|+..+..
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~~   78 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELGY   78 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHh
Confidence            46789999999999999999987653

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.75  E-value=4.3e-06  Score=50.63  Aligned_cols=23  Identities=26%  Similarity=0.343  Sum_probs=20.9

Q ss_pred             CceEEEecCCCCcchHHHHHHHh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~   48 (109)
                      +.++|+|..|+|||||+++|.+.
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999865

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.75  E-value=6.1e-06  Score=50.68  Aligned_cols=25  Identities=32%  Similarity=0.260  Sum_probs=21.7

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +.++.|+||.||||||+.+.|+--+
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4678899999999999999997654

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.75  E-value=5.5e-06  Score=50.05  Aligned_cols=22  Identities=27%  Similarity=0.256  Sum_probs=19.4

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++|+||.||||||+.+.|+--+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            5799999999999999997655

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=2.4e-06  Score=52.00  Aligned_cols=26  Identities=23%  Similarity=0.284  Sum_probs=21.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      |-++.|+|++||||||+.++|+-.+.
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45677899999999999999987653

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.74  E-value=5.7e-06  Score=50.82  Aligned_cols=25  Identities=20%  Similarity=0.123  Sum_probs=21.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      ..+++|+||.||||||+.+.|+--+
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3578899999999999999998755

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.73  E-value=5.7e-06  Score=50.19  Aligned_cols=22  Identities=41%  Similarity=0.504  Sum_probs=19.6

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|..++|||||+++|.+.
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            3689999999999999999864

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.71  E-value=7.1e-06  Score=50.43  Aligned_cols=25  Identities=24%  Similarity=0.203  Sum_probs=21.5

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      -+++++|.+|+||||+.++|+-.+.
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4678999999999999999986654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=7.3e-06  Score=54.75  Aligned_cols=26  Identities=35%  Similarity=0.437  Sum_probs=22.3

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      -.++|+|++|+|||||+++|...+..
T Consensus        55 ~~IgitG~pGaGKSTLi~~l~~~~~~   80 (327)
T d2p67a1          55 LRLGVTGTPGAGKSTFLEAFGMLLIR   80 (327)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             eEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            46899999999999999999876543

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.70  E-value=7.9e-06  Score=54.47  Aligned_cols=32  Identities=25%  Similarity=0.481  Sum_probs=26.0

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhccCccccc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSDESTSLR   57 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~~~~~~~   57 (109)
                      ..++|+|+.||||||+|+||...+++....+.
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~~~~rivt  198 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIIS  198 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEE
T ss_pred             CCEEEEeeccccchHHHHHHhhhcccccceee
Confidence            44788999999999999999988876554443

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=7.7e-06  Score=50.02  Aligned_cols=24  Identities=25%  Similarity=0.177  Sum_probs=20.5

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      -+++|+||.||||||+.+.|+--+
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            357899999999999999997644

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.66  E-value=1.2e-05  Score=50.56  Aligned_cols=27  Identities=26%  Similarity=0.388  Sum_probs=23.2

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhccC
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSDE   52 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~~   52 (109)
                      ....|.||+|+||||+.++|+--+...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~~~   62 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQTN   62 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccCCC
Confidence            457899999999999999999877644

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.63  E-value=6.6e-06  Score=49.97  Aligned_cols=22  Identities=23%  Similarity=0.250  Sum_probs=19.4

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      -++|+|+.++|||||+++|.+.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999998654

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.63  E-value=1.2e-05  Score=50.55  Aligned_cols=25  Identities=28%  Similarity=0.332  Sum_probs=21.4

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ....|.||+|+||||++++|+-.+.
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHH
Confidence            4578999999999999999987654

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.63  E-value=1.3e-05  Score=50.52  Aligned_cols=26  Identities=27%  Similarity=0.401  Sum_probs=22.6

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      ..+.|.||.|+||||+.++|+..+..
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~~~~   61 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHELGV   61 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            46789999999999999999987653

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.63  E-value=1.1e-05  Score=49.01  Aligned_cols=23  Identities=26%  Similarity=0.193  Sum_probs=20.0

Q ss_pred             eEEEecCCCCcchHHHHHHHhhc
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ++|+||.||||||+.+.|+--+.
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~g   25 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKYG   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            57899999999999999987653

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.62  E-value=1.1e-05  Score=48.34  Aligned_cols=22  Identities=18%  Similarity=0.552  Sum_probs=19.6

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|..|||||||++.|.+-
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999775

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=1.2e-05  Score=48.57  Aligned_cols=22  Identities=18%  Similarity=0.080  Sum_probs=19.0

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++|+||.||||||+.+.|+--+
T Consensus         3 I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999997554

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.61  E-value=1.2e-05  Score=48.75  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=19.4

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++|+||.||||||+.+.|+--+
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            5789999999999999997655

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.60  E-value=4.7e-06  Score=49.36  Aligned_cols=22  Identities=27%  Similarity=0.312  Sum_probs=19.9

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++|+|+.++|||||+++|.+--
T Consensus         3 I~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999998753

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.58  E-value=9.9e-06  Score=48.24  Aligned_cols=21  Identities=14%  Similarity=0.256  Sum_probs=18.6

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++|+|+.|+|||||++.|.+-
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHcCC
Confidence            679999999999999998653

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.58  E-value=5.1e-06  Score=50.35  Aligned_cols=21  Identities=29%  Similarity=0.343  Sum_probs=19.1

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++|+|+.++|||||+++|.+.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999754

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.58  E-value=1.5e-05  Score=49.22  Aligned_cols=23  Identities=26%  Similarity=0.264  Sum_probs=20.1

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|+.++|||||+++|.+--
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~   24 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQ   24 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999998743

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.58  E-value=1.8e-05  Score=52.20  Aligned_cols=27  Identities=15%  Similarity=0.327  Sum_probs=23.5

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      +.-+.|+||+|||||.|.++|+..+..
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~~~   75 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLANA   75 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             CceEEEECCCCCCHHHHHHHHhhcccc
Confidence            466789999999999999999988753

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=1.5e-05  Score=49.27  Aligned_cols=25  Identities=24%  Similarity=0.301  Sum_probs=21.7

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .+++|.||.||||||+.+.|+--+.
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5788999999999999999976654

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.56  E-value=1.5e-05  Score=49.99  Aligned_cols=24  Identities=29%  Similarity=0.468  Sum_probs=20.8

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      ....|.||+|+||||++++|+--+
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHHH
Confidence            347899999999999999998764

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.56  E-value=1.4e-05  Score=48.80  Aligned_cols=21  Identities=29%  Similarity=0.256  Sum_probs=18.7

Q ss_pred             ceEEEecCCCCcchHHHHHHH
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~   47 (109)
                      +++|+|+.||||||+.+.|.-
T Consensus         5 IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999998864

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.56  E-value=2.4e-05  Score=49.50  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=22.8

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      ..+.|.||.|+||||++++|+-.+..
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l~~   69 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELYKD   69 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHhc
Confidence            56889999999999999999987753

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.55  E-value=1.6e-05  Score=48.53  Aligned_cols=23  Identities=22%  Similarity=0.299  Sum_probs=19.3

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+||.||||||+.+.|+--+
T Consensus         5 riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           5 RAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            45689999999999999998443

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.54  E-value=1.7e-05  Score=48.08  Aligned_cols=22  Identities=27%  Similarity=0.333  Sum_probs=19.1

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++|+||.||||||+.+.|+--+
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5788999999999999997654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=97.52  E-value=1.8e-05  Score=48.07  Aligned_cols=21  Identities=14%  Similarity=0.176  Sum_probs=19.3

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++|+|...+|||||+++|.+.
T Consensus         8 IaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEeCCCCcHHHHHHHHHHh
Confidence            799999999999999999864

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.52  E-value=2e-05  Score=51.71  Aligned_cols=25  Identities=20%  Similarity=0.300  Sum_probs=19.3

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .+++|.|++||||||+.++|.-.+.
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHh
Confidence            4789999999999999999987765

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.52  E-value=2.1e-05  Score=50.33  Aligned_cols=24  Identities=21%  Similarity=0.137  Sum_probs=21.2

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      -+.|.||.|||||++.++|+..+.
T Consensus        42 ~vLL~GppGtGKT~la~alA~~~~   65 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAEESN   65 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECcCCCCHHHHHHHHhhccc
Confidence            367899999999999999998765

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=9.2e-06  Score=48.83  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=20.1

Q ss_pred             CceEEEecCCCCcchHHHHHHHh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~   48 (109)
                      ..++|+|+.++|||||+++|.+.
T Consensus        17 ~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          17 IEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            45899999999999999998653

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.49  E-value=2e-05  Score=48.92  Aligned_cols=23  Identities=26%  Similarity=0.171  Sum_probs=20.1

Q ss_pred             eEEEecCCCCcchHHHHHHHhhc
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ++|-||.||||||+.+.|+--+.
T Consensus         6 IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           6 IAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             EEEECSSCSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            56779999999999999987664

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.48  E-value=2.3e-05  Score=52.17  Aligned_cols=24  Identities=29%  Similarity=0.267  Sum_probs=21.1

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      -.++|+|+.|+|||||++.|...+
T Consensus        52 ~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          52 IRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEeeeCCCCCCHHHHHHHHHHHH
Confidence            468999999999999999998654

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=2.8e-05  Score=50.16  Aligned_cols=26  Identities=27%  Similarity=0.240  Sum_probs=22.6

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      .-+.|+||+|||||++.++|+..+..
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~~~~   71 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGEAKV   71 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CeEEeeCCCCCCccHHHHHHHHHcCC
Confidence            45788999999999999999987753

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.48  E-value=2.5e-05  Score=49.43  Aligned_cols=25  Identities=20%  Similarity=0.113  Sum_probs=21.1

Q ss_pred             CCCceEEEecCCCCcchHHHHHHHh
Q psy16868         24 DKRHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        24 ~~~~~~i~G~NG~GKStll~al~~~   48 (109)
                      .+..++|+||.|+|||||++.++--
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~   52 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINE   52 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence            3678889999999999999987643

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.48  E-value=2.3e-05  Score=48.16  Aligned_cols=23  Identities=26%  Similarity=0.353  Sum_probs=19.7

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+||.||||||+.+.|+--+
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            36788999999999999998654

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.47  E-value=2.2e-05  Score=50.54  Aligned_cols=22  Identities=32%  Similarity=0.347  Sum_probs=19.7

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      .++|+|++|+|||||+++|.+-
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4778999999999999999874

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.47  E-value=2.7e-05  Score=49.91  Aligned_cols=26  Identities=23%  Similarity=0.250  Sum_probs=22.4

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      .-+.|.||.|+|||+|.++|+..+..
T Consensus        43 ~giLl~GppGtGKT~la~aia~~~~~   68 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGEARV   68 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             ceEEEecCCCCChhHHHHHHHHHcCC
Confidence            44789999999999999999987653

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.46  E-value=2.7e-05  Score=46.59  Aligned_cols=21  Identities=24%  Similarity=0.504  Sum_probs=18.9

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++++|+.|+|||||++.+..-
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            689999999999999998754

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=97.45  E-value=2.8e-05  Score=46.26  Aligned_cols=21  Identities=33%  Similarity=0.305  Sum_probs=18.5

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++|+|+.|+|||||+..+..-
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            578999999999999998654

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.44  E-value=3.1e-05  Score=46.13  Aligned_cols=21  Identities=24%  Similarity=0.368  Sum_probs=18.7

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++++|++|+|||||++.+..-
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            579999999999999998754

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=3e-05  Score=51.35  Aligned_cols=25  Identities=28%  Similarity=0.204  Sum_probs=22.5

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      =+++|.|++||||||+.+.|.-++.
T Consensus        81 ~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          81 YIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCCCcHHHHHHHHHHh
Confidence            3788999999999999999998875

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=3.3e-05  Score=46.05  Aligned_cols=21  Identities=38%  Similarity=0.439  Sum_probs=18.8

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++++|+.|+|||||+..+..-
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999998764

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.42  E-value=3.3e-05  Score=48.23  Aligned_cols=24  Identities=25%  Similarity=0.415  Sum_probs=20.8

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ...|.||+|+||||+.++++..+.
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHHHh
Confidence            467899999999999999987654

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=3.3e-05  Score=49.63  Aligned_cols=26  Identities=23%  Similarity=0.243  Sum_probs=22.2

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      .-+.|.||.|+|||+++++++..+..
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~~~~   64 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANETGA   64 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             ceeEEecCCCCCchHHHHHHHHHhCC
Confidence            34788999999999999999997643

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.41  E-value=2.7e-05  Score=48.28  Aligned_cols=20  Identities=25%  Similarity=0.217  Sum_probs=18.0

Q ss_pred             ceEEEecCCCCcchHHHHHH
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQ   46 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~   46 (109)
                      +++|+|..||||||+.+.+.
T Consensus         4 iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57899999999999999875

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.41  E-value=1.6e-05  Score=48.57  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=20.8

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +++|-|+.||||||+++.|.-.+
T Consensus        11 ~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1          11 TVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             EEEEECSTTSCHHHHHHTTGGGT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68899999999999999998665

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=3.4e-05  Score=46.22  Aligned_cols=21  Identities=19%  Similarity=0.406  Sum_probs=18.7

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++|+|+.|+|||||+..+..-
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            689999999999999998753

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=3.8e-05  Score=45.96  Aligned_cols=20  Identities=40%  Similarity=0.461  Sum_probs=18.3

Q ss_pred             eEEEecCCCCcchHHHHHHH
Q psy16868         28 NVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~   47 (109)
                      ++|+|..|+|||||++.+..
T Consensus         8 i~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999998865

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.39  E-value=2.5e-05  Score=49.29  Aligned_cols=25  Identities=28%  Similarity=0.387  Sum_probs=21.3

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ....|.||+|+||||+.++++--+.
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~l~   58 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLESIF   58 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhhc
Confidence            3468999999999999999987653

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.38  E-value=3.1e-05  Score=49.99  Aligned_cols=25  Identities=24%  Similarity=0.215  Sum_probs=21.9

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .-+.|.||+|+|||+|.++|+..+.
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCcchhHHHHHHHHhC
Confidence            4577889999999999999999764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=3.8e-05  Score=46.10  Aligned_cols=21  Identities=24%  Similarity=0.494  Sum_probs=18.3

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++++|+.|+|||||++.+..-
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            579999999999999987654

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=97.38  E-value=4.2e-05  Score=52.16  Aligned_cols=28  Identities=32%  Similarity=0.354  Sum_probs=24.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDE   52 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~   52 (109)
                      .+++.|.||.||||||+|.++...+...
T Consensus       158 ~GliLvtGpTGSGKSTTl~~~l~~~~~~  185 (401)
T d1p9ra_         158 HGIILVTGPTGSGKSTTLYAGLQELNSS  185 (401)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred             hceEEEEcCCCCCccHHHHHHhhhhcCC
Confidence            5789999999999999999998776543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=3.9e-05  Score=46.15  Aligned_cols=21  Identities=33%  Similarity=0.491  Sum_probs=18.7

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++|+|+.|+|||||++.+..-
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999998653

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=5.1e-05  Score=46.95  Aligned_cols=26  Identities=23%  Similarity=0.266  Sum_probs=22.3

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      |.+++|-|+-||||||+++.|.-.+.
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46788999999999999999986653

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.36  E-value=3.4e-05  Score=52.62  Aligned_cols=22  Identities=36%  Similarity=0.513  Sum_probs=20.2

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++|+|+.|+|||||+++|.|.-
T Consensus        59 Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          59 VAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             EEEEECTTSSHHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            8899999999999999998853

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=4.7e-05  Score=46.24  Aligned_cols=23  Identities=13%  Similarity=0.242  Sum_probs=20.1

Q ss_pred             CCceEEEecCCCCcchHHHHHHH
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~   47 (109)
                      +.++.|.||+|+|||+|+-.++.
T Consensus        23 G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          23 GSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHH
Confidence            67999999999999999876654

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.34  E-value=4.5e-05  Score=48.03  Aligned_cols=24  Identities=21%  Similarity=0.174  Sum_probs=21.4

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .+++|+|...+|||||+++|.+..
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhc
Confidence            568999999999999999998764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=97.34  E-value=4.2e-05  Score=45.78  Aligned_cols=21  Identities=14%  Similarity=0.373  Sum_probs=18.6

Q ss_pred             ceEEEecCCCCcchHHHHHHH
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~   47 (109)
                      .++++|+.|+|||||++.+.+
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999854

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.32  E-value=5.8e-05  Score=47.22  Aligned_cols=25  Identities=32%  Similarity=0.367  Sum_probs=19.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +.+++++||+|+||||.+-=|+..+
T Consensus         6 ~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           6 GRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            5788999999999999975555444

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=5.5e-05  Score=45.25  Aligned_cols=21  Identities=24%  Similarity=0.328  Sum_probs=18.8

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++|+|+.|+|||||++.+..-
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999998753

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.31  E-value=4.5e-05  Score=47.54  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=20.8

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ...|.||.|+||||++++|+.-+.
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHHhh
Confidence            367899999999999999987654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.31  E-value=5.3e-05  Score=45.01  Aligned_cols=20  Identities=35%  Similarity=0.346  Sum_probs=17.9

Q ss_pred             eEEEecCCCCcchHHHHHHH
Q psy16868         28 NVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~   47 (109)
                      ++++|+.|+|||||+..+..
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999998765

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=5.8e-05  Score=44.74  Aligned_cols=21  Identities=19%  Similarity=0.382  Sum_probs=18.6

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++|+|..|+|||||++.+..-
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999998653

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=5.5e-05  Score=45.01  Aligned_cols=21  Identities=33%  Similarity=0.385  Sum_probs=18.7

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++|+|+.|+|||||+..+..-
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999998754

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=4.9e-05  Score=47.18  Aligned_cols=22  Identities=32%  Similarity=0.256  Sum_probs=19.2

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      +++|+|..||||||+.+.+.-+
T Consensus         5 iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHC
Confidence            5789999999999999988643

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=6.1e-05  Score=44.83  Aligned_cols=22  Identities=18%  Similarity=0.200  Sum_probs=19.0

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      -++|+|+.|+|||||++.+..-
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3689999999999999998653

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=5.8e-05  Score=44.92  Aligned_cols=21  Identities=24%  Similarity=0.428  Sum_probs=18.6

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++|+|..|+|||||++.+..-
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999988754

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=97.27  E-value=4.9e-05  Score=50.27  Aligned_cols=26  Identities=31%  Similarity=0.438  Sum_probs=22.8

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      .-+.|+|+.|+|||||++++..++++
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             CeEEEECCCCccHHHHHHHHHHhCCC
Confidence            45788999999999999999998853

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.26  E-value=6e-05  Score=47.14  Aligned_cols=26  Identities=23%  Similarity=0.321  Sum_probs=20.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +.+++++||+|+||||.+-=|+..+.
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~~   35 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYYK   35 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45778899999999999877766554

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=6.8e-05  Score=45.06  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=19.3

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      -++|+|+.|+|||||+..+..--
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~~   26 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKDQ   26 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            36899999999999998876543

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.26  E-value=6.5e-05  Score=45.43  Aligned_cols=21  Identities=19%  Similarity=0.384  Sum_probs=18.6

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++++|..|+|||||++.+..-
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999988753

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.25  E-value=6.3e-05  Score=47.25  Aligned_cols=25  Identities=28%  Similarity=0.292  Sum_probs=19.2

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +.+++++||+|+||||.+-=|+..+
T Consensus        11 p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2          11 PFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4577889999999999875555443

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.25  E-value=7.2e-05  Score=46.93  Aligned_cols=26  Identities=19%  Similarity=0.286  Sum_probs=16.1

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +.+++++||+|+||||.+-=|+..+.
T Consensus        12 p~vi~lvGptGvGKTTTiAKLA~~~~   37 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAGKLAYFYK   37 (211)
T ss_dssp             SEEEEEECSCCC----HHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46788899999999999765554443

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.24  E-value=6.9e-05  Score=44.62  Aligned_cols=21  Identities=24%  Similarity=0.398  Sum_probs=18.5

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++|+|..|+|||||++.+..-
T Consensus         7 i~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999998653

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=6.4e-05  Score=45.48  Aligned_cols=20  Identities=25%  Similarity=0.560  Sum_probs=17.9

Q ss_pred             eEEEecCCCCcchHHHHHHH
Q psy16868         28 NVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~   47 (109)
                      ++|+|+.|+|||||++.+..
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            68999999999999998864

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=7.1e-05  Score=44.55  Aligned_cols=21  Identities=19%  Similarity=0.251  Sum_probs=18.4

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++|+|..|+|||||++.+..-
T Consensus         6 ivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            589999999999999987653

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=6.1e-05  Score=44.92  Aligned_cols=20  Identities=30%  Similarity=0.434  Sum_probs=17.9

Q ss_pred             eEEEecCCCCcchHHHHHHH
Q psy16868         28 NVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~   47 (109)
                      ++|+|..|+|||||+..+..
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            68999999999999998765

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=97.23  E-value=4.7e-05  Score=45.96  Aligned_cols=22  Identities=23%  Similarity=0.626  Sum_probs=18.6

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      -++++|+.|+|||||++.+..-
T Consensus        19 KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3679999999999999987543

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=8.1e-05  Score=46.69  Aligned_cols=25  Identities=24%  Similarity=0.240  Sum_probs=19.9

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .+++++||+|+||||.+-=|+..+.
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA~~~~   34 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLARQFE   34 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4678899999999999866665544

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=9.1e-05  Score=46.11  Aligned_cols=26  Identities=23%  Similarity=0.116  Sum_probs=21.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      |.+++|-|+-||||||+.+.|.-.+.
T Consensus         3 G~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           3 GALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45778889999999999999877654

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.22  E-value=6.3e-05  Score=46.91  Aligned_cols=25  Identities=24%  Similarity=0.268  Sum_probs=21.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +-++-|+|.+|||||||.++|.--+
T Consensus        24 g~vIwltGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          24 GLTIWLTGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999997543

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.21  E-value=8e-05  Score=45.67  Aligned_cols=24  Identities=17%  Similarity=0.261  Sum_probs=20.5

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +++|-|.-||||||+++.|.--+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            468889999999999999986553

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=7.8e-05  Score=44.51  Aligned_cols=22  Identities=27%  Similarity=0.255  Sum_probs=18.7

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++|+|+.|+|||||++.+.+-.
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEECCCCcCHHHHHHHHhCCc
Confidence            5899999999999999886643

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.17  E-value=9.2e-05  Score=43.80  Aligned_cols=21  Identities=19%  Similarity=0.322  Sum_probs=18.6

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++++|..|+|||||+..+..-
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999988654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=97.16  E-value=6e-05  Score=45.15  Aligned_cols=20  Identities=15%  Similarity=0.607  Sum_probs=17.9

Q ss_pred             eEEEecCCCCcchHHHHHHH
Q psy16868         28 NVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~   47 (109)
                      ++++|++|+|||||++.+..
T Consensus        15 IvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          15 ILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEETTSSHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            67899999999999998754

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.0001  Score=44.19  Aligned_cols=22  Identities=36%  Similarity=0.413  Sum_probs=18.8

Q ss_pred             ceEEEecCCCCcchHHHHHHHh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~   48 (109)
                      -++|+|..|+|||||++.+..-
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999987643

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=9.7e-05  Score=44.62  Aligned_cols=21  Identities=29%  Similarity=0.400  Sum_probs=18.6

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++|+|..|+|||||++.+..-
T Consensus         8 ivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           8 CVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999988653

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.15  E-value=6.2e-05  Score=45.14  Aligned_cols=21  Identities=24%  Similarity=0.460  Sum_probs=8.3

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++|+|..|+|||||++.+..-
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEECCCCC------------
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999988653

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.0001  Score=44.33  Aligned_cols=21  Identities=24%  Similarity=0.486  Sum_probs=18.9

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++++|..|+|||||++.+..-
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999998764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.0001  Score=44.10  Aligned_cols=20  Identities=25%  Similarity=0.421  Sum_probs=17.8

Q ss_pred             eEEEecCCCCcchHHHHHHH
Q psy16868         28 NVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~   47 (109)
                      ++|+|+.|+|||||+..+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            68999999999999988764

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.13  E-value=4.6e-05  Score=48.38  Aligned_cols=22  Identities=27%  Similarity=0.232  Sum_probs=18.7

Q ss_pred             EEEecCCCCcchHHHHHHHhhc
Q psy16868         29 VVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        29 ~i~G~NG~GKStll~al~~~l~   50 (109)
                      .|+||.|+|||+++++++-.+.
T Consensus        50 ~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          50 GSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             ECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EeECCCCCCHHHHHHHHHHHHH
Confidence            4469999999999999987653

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00011  Score=43.86  Aligned_cols=21  Identities=29%  Similarity=0.409  Sum_probs=18.6

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++++|+.|+|||||+..+..-
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999988763

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.12  E-value=0.00015  Score=45.20  Aligned_cols=26  Identities=15%  Similarity=0.153  Sum_probs=22.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      |.+++|-|+-||||||+++.|.-.+.
T Consensus         3 Gk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           3 GKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            56789999999999999999986654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.11  E-value=0.00011  Score=43.68  Aligned_cols=22  Identities=23%  Similarity=0.246  Sum_probs=18.8

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++|+|..|+|||||+..+..--
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~~   27 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            5799999999999999876543

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00012  Score=43.69  Aligned_cols=20  Identities=30%  Similarity=0.484  Sum_probs=18.1

Q ss_pred             eEEEecCCCCcchHHHHHHH
Q psy16868         28 NVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~   47 (109)
                      ++++|..|+|||||++.+..
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00012  Score=43.53  Aligned_cols=22  Identities=32%  Similarity=0.392  Sum_probs=19.0

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++|+|..|+|||||++.+..--
T Consensus         6 ivvvG~~~vGKTsli~r~~~~~   27 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            6899999999999999886543

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00012  Score=43.63  Aligned_cols=22  Identities=23%  Similarity=0.291  Sum_probs=18.9

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++++|..|+|||||+..+..--
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~~   30 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKGQ   30 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6899999999999999887543

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.09  E-value=0.00012  Score=47.91  Aligned_cols=23  Identities=35%  Similarity=0.254  Sum_probs=19.6

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +++|.|+.|||||||...|.-.+
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~L   51 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNHL   51 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            67899999999999998885544

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00013  Score=43.46  Aligned_cols=21  Identities=24%  Similarity=0.400  Sum_probs=18.5

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++|+|+.|+|||||++.+..-
T Consensus         9 i~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999987653

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.06  E-value=0.00018  Score=49.69  Aligned_cols=27  Identities=15%  Similarity=0.327  Sum_probs=24.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      +.-+.++||+|||||-|.+.|+.++.-
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~V   75 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLANA   75 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhCC
Confidence            566889999999999999999998863

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.06  E-value=0.00014  Score=44.38  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=18.6

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++|+|+.|+|||||+..+..-
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            689999999999999988653

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00011  Score=44.05  Aligned_cols=22  Identities=32%  Similarity=0.377  Sum_probs=19.2

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++|+|..|+|||||++.+.+..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCc
Confidence            6799999999999999987653

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.00014  Score=43.96  Aligned_cols=21  Identities=29%  Similarity=0.371  Sum_probs=18.2

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++|+|..|+|||||+..+..-
T Consensus         5 ivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999877654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=7.6e-05  Score=44.67  Aligned_cols=20  Identities=35%  Similarity=0.491  Sum_probs=17.1

Q ss_pred             eEEEecCCCCcchHHHHHHH
Q psy16868         28 NVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~   47 (109)
                      ++++|+.|+|||||+..+..
T Consensus         6 i~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC-
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999987644

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=5e-05  Score=47.48  Aligned_cols=25  Identities=20%  Similarity=0.325  Sum_probs=21.8

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .+++|-|+-||||||+++.|+-.+.
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4689999999999999999987663

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.02  E-value=0.0002  Score=43.32  Aligned_cols=27  Identities=22%  Similarity=0.411  Sum_probs=21.2

Q ss_pred             eEEEecCCCCcchHHHHHHHhhc--cCcc
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVLS--DEST   54 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l~--~~~~   54 (109)
                      ++|+|..|+|||||+..+...-.  |+.|
T Consensus         5 ivllG~~~vGKTsll~r~~f~~~~~pTiG   33 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQMRIIHGQDPTKG   33 (200)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence            57999999999999999865443  4444

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00015  Score=43.88  Aligned_cols=20  Identities=30%  Similarity=0.448  Sum_probs=17.9

Q ss_pred             eEEEecCCCCcchHHHHHHH
Q psy16868         28 NVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~   47 (109)
                      ++|+|..|+|||||++.+..
T Consensus        12 i~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            68999999999999988754

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=97.00  E-value=0.00016  Score=43.06  Aligned_cols=21  Identities=29%  Similarity=0.593  Sum_probs=18.4

Q ss_pred             ceEEEecCCCCcchHHHHHHH
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~   47 (109)
                      -++|+|..|+|||||++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            368999999999999998764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.98  E-value=0.00018  Score=42.97  Aligned_cols=21  Identities=38%  Similarity=0.412  Sum_probs=18.4

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++++|..|+|||||+..+..-
T Consensus         7 i~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            578999999999999988653

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.98  E-value=0.00021  Score=42.87  Aligned_cols=26  Identities=15%  Similarity=0.134  Sum_probs=23.3

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +.+++|.|+=||||||+.++++-.+.
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEecCCCccHHHHHHHHHhhcc
Confidence            55788999999999999999998875

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00019  Score=43.62  Aligned_cols=22  Identities=27%  Similarity=0.350  Sum_probs=18.6

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++|+|+.|+|||||+..+..--
T Consensus         6 vvllG~~~vGKTSli~r~~~~~   27 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTNK   27 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6899999999999998876543

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.96  E-value=0.00021  Score=44.69  Aligned_cols=25  Identities=16%  Similarity=0.149  Sum_probs=21.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +.++.|.|++|+|||+|+.-++.-.
T Consensus        26 gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          26 DSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            6789999999999999987665543

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.00022  Score=45.37  Aligned_cols=25  Identities=20%  Similarity=0.307  Sum_probs=22.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +.++.|.|+.|+|||||+-.|+..+
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            6889999999999999998887654

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.94  E-value=0.0002  Score=48.21  Aligned_cols=28  Identities=25%  Similarity=0.221  Sum_probs=24.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDE   52 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~   52 (109)
                      +...+|.||.|+|||++..+|+..+...
T Consensus       154 ~~~~~~~g~~~~gk~~~~~~~~~~~~~~  181 (362)
T d1svma_         154 KRYWLFKGPIDSGKTTLAAALLELCGGK  181 (362)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred             cCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            4578999999999999999999988743

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.94  E-value=0.00027  Score=42.45  Aligned_cols=27  Identities=19%  Similarity=0.322  Sum_probs=21.8

Q ss_pred             eEEEecCCCCcchHHHHHHHhhccCcc
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVLSDEST   54 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l~~~~~   54 (109)
                      ++|+|..|+|||||++-+..--.++.|
T Consensus         5 ivllG~~~vGKTsl~~r~~~~~~~t~~   31 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKIIHEAGTG   31 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred             EEEECCCCCCHHHHHHHHhhCCCCCcc
Confidence            689999999999999987665555554

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00018  Score=45.07  Aligned_cols=26  Identities=23%  Similarity=0.264  Sum_probs=22.1

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +.+++|=|+-||||||+++.|.--+.
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHh
Confidence            35788999999999999999986553

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.90  E-value=0.00022  Score=44.52  Aligned_cols=24  Identities=21%  Similarity=0.264  Sum_probs=20.9

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ...|.||.|+|||-|+.|++--+.
T Consensus        38 ~l~l~G~~G~GKTHLl~A~~~~~~   61 (213)
T d1l8qa2          38 PIFIYGSVGTGKTHLLQAAGNEAK   61 (213)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             cEEEECCCCCcHHHHHHHHHHHhc
Confidence            378999999999999999987654

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.89  E-value=0.00018  Score=44.58  Aligned_cols=22  Identities=18%  Similarity=0.280  Sum_probs=19.0

Q ss_pred             CCceEEEecCCCCcchHHHHHH
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQ   46 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~   46 (109)
                      +.++.|.|+.|+|||||+--++
T Consensus        34 G~~~li~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          34 GSITELFGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHH
Confidence            6789999999999999976554

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00024  Score=42.83  Aligned_cols=23  Identities=26%  Similarity=0.200  Sum_probs=19.2

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      -++++|..|+|||||+..+..--
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~~   29 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTGS   29 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            36889999999999999876543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=96.86  E-value=0.00026  Score=45.77  Aligned_cols=23  Identities=30%  Similarity=0.463  Sum_probs=19.7

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|..|+|||||+++|...-
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~   26 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKT   26 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHc
Confidence            36899999999999999996543

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.85  E-value=0.00023  Score=44.40  Aligned_cols=28  Identities=21%  Similarity=0.261  Sum_probs=21.1

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc-cCcc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS-DEST   54 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~-~~~~   54 (109)
                      .++|+|..|+|||||++-+..--. |+.|
T Consensus         8 KilllG~~~vGKTsll~~~~~~~~~pTiG   36 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRILHVVLTSG   36 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence            368999999999999998754333 4444

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.82  E-value=0.0003  Score=43.54  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=20.1

Q ss_pred             eEEEecCCCCcchHHHHHHHhhc
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ++|+|.-++|||||+++|.+...
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~~~g   28 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTYVAA   28 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHhh
Confidence            68999999999999999976544

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=96.81  E-value=0.00024  Score=43.35  Aligned_cols=22  Identities=27%  Similarity=0.226  Sum_probs=19.6

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++|+|.-.+|||||+++|.+..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            6899999999999999998754

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.81  E-value=0.0003  Score=42.86  Aligned_cols=25  Identities=20%  Similarity=0.268  Sum_probs=20.3

Q ss_pred             cCCCCceEEEecCCCCcchHHHHHH
Q psy16868         22 PFDKRHNVVVGRNGSGKSNFFFAIQ   46 (109)
Q Consensus        22 ~~~~~~~~i~G~NG~GKStll~al~   46 (109)
                      .+.+.-++|.|++|+||||+.-++.
T Consensus        11 ~~~g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_          11 DIYGLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             EETTEEEEEECCTTSCHHHHHHHHH
T ss_pred             EECCEEEEEEeCCCCCHHHHHHHHH
Confidence            5557778999999999999876643

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.00038  Score=43.81  Aligned_cols=26  Identities=19%  Similarity=0.204  Sum_probs=21.3

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      ....|.||+|+||||+.++++..+..
T Consensus        35 ~~~Ll~Gp~G~GKtt~a~~~~~~l~~   60 (239)
T d1njfa_          35 HAYLFSGTRGVGKTSIARLLAKGLNC   60 (239)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHC
T ss_pred             eeEEEECCCCCcHHHHHHHHHHHhcC
Confidence            34678899999999999998876643

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.81  E-value=0.00026  Score=43.87  Aligned_cols=25  Identities=24%  Similarity=0.274  Sum_probs=21.1

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +.++.|.|++|+|||+++--++...
T Consensus        34 G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          34 QSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            6789999999999999987776543

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.81  E-value=0.00028  Score=45.96  Aligned_cols=23  Identities=39%  Similarity=0.507  Sum_probs=20.8

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|+|...+|||||+.||+..-
T Consensus        12 kiGivG~Pn~GKSTlfnalT~~~   34 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITKSV   34 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHST
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            38999999999999999999763

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.78  E-value=0.00033  Score=44.71  Aligned_cols=23  Identities=26%  Similarity=0.307  Sum_probs=20.5

Q ss_pred             CCceEEEecCCCCcchHHHHHHH
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~   47 (109)
                      |++++|.|++|+||||++.-|+.
T Consensus        35 G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          35 GEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHH
Confidence            68999999999999999877764

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.78  E-value=0.00028  Score=46.81  Aligned_cols=25  Identities=28%  Similarity=0.421  Sum_probs=21.3

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +...++||+|+|||.|.++|+..+.
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHHhc
Confidence            4455679999999999999999875

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.78  E-value=0.00024  Score=46.51  Aligned_cols=21  Identities=48%  Similarity=0.623  Sum_probs=19.1

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++|+|...+|||||+++|.+.
T Consensus         3 v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC-
T ss_pred             EeEECCCCCCHHHHHHHHHCC
Confidence            689999999999999999876

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.77  E-value=0.00037  Score=42.89  Aligned_cols=21  Identities=33%  Similarity=0.600  Sum_probs=18.3

Q ss_pred             CCceEEEecCCCCcchHHHHH
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAI   45 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al   45 (109)
                      +.++.|.|++|+|||+|+--+
T Consensus        26 G~~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          26 GRSTLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             TSEEEEEESTTSSHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHH
Confidence            789999999999999997543

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.00033  Score=46.16  Aligned_cols=24  Identities=21%  Similarity=0.344  Sum_probs=22.0

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ..+++||+|+|||.|.++|+-++.
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCcchhHHHHHHHHhhcc
Confidence            578999999999999999999875

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.76  E-value=0.00036  Score=42.52  Aligned_cols=25  Identities=24%  Similarity=0.287  Sum_probs=20.1

Q ss_pred             cCCCCceEEEecCCCCcchHHHHHH
Q psy16868         22 PFDKRHNVVVGRNGSGKSNFFFAIQ   46 (109)
Q Consensus        22 ~~~~~~~~i~G~NG~GKStll~al~   46 (109)
                      .+.+.-+.|.|++|+||||+.-.+.
T Consensus        12 ~~~g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2          12 EVFGVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             EETTEEEEEEESSSSSHHHHHHHHH
T ss_pred             EECCEEEEEEcCCCCCHHHHHHHHH
Confidence            4456778899999999999986653

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.74  E-value=0.00035  Score=45.37  Aligned_cols=24  Identities=13%  Similarity=0.088  Sum_probs=20.5

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      -++|+|..|+|||||+++|.....
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g   31 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTG   31 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcC
Confidence            468999999999999999965543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.00031  Score=44.01  Aligned_cols=23  Identities=22%  Similarity=0.274  Sum_probs=19.3

Q ss_pred             CceEEEecCCCCcchHHHHHHHh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~   48 (109)
                      .+++|.|.=|||||||++.+...
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhc
Confidence            46789999999999999887543

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.0003  Score=43.85  Aligned_cols=23  Identities=13%  Similarity=0.164  Sum_probs=19.7

Q ss_pred             CCceEEEecCCCCcchHHHHHHH
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~   47 (109)
                      +.++.|.|++|+|||+|.-.++.
T Consensus        37 G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          37 MAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999776653

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.72  E-value=0.00033  Score=43.89  Aligned_cols=21  Identities=24%  Similarity=0.042  Sum_probs=18.7

Q ss_pred             ceEEEecCCCCcchHHHHHHH
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~   47 (109)
                      +++|+|+-||||||+.+.|.-
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            579999999999999999843

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.69  E-value=0.00034  Score=43.68  Aligned_cols=21  Identities=29%  Similarity=0.453  Sum_probs=17.9

Q ss_pred             CCceEEEecCCCCcchHHHHH
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAI   45 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al   45 (109)
                      +.++.|.||+|+|||||.--+
T Consensus        36 G~~~li~G~pGsGKT~~~lq~   56 (254)
T d1pzna2          36 QAITEVFGEFGSGKTQLAHTL   56 (254)
T ss_dssp             SEEEEEEESTTSSHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHH
Confidence            578999999999999996544

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.69  E-value=0.00033  Score=45.54  Aligned_cols=24  Identities=38%  Similarity=0.272  Sum_probs=21.4

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .-++++|.-.+|||||++||.|.-
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCC
Confidence            457899999999999999999864

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.69  E-value=0.0004  Score=41.81  Aligned_cols=23  Identities=26%  Similarity=0.496  Sum_probs=19.3

Q ss_pred             eEEEecCCCCcchHHHHHHHhhc
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ++++|..|+|||||+..+..--.
T Consensus         5 iv~lG~~~vGKTsll~r~~~~~~   27 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRIIHG   27 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            58999999999999998865543

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.67  E-value=0.00035  Score=45.22  Aligned_cols=24  Identities=25%  Similarity=0.159  Sum_probs=21.3

Q ss_pred             CceEEEecCCCCcchHHHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .-++++|.-.+|||||++||.|.-
T Consensus        27 P~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          27 PQIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CeEEEEcCCCCCHHHHHHHHhCCC
Confidence            358899999999999999999864

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.00046  Score=44.65  Aligned_cols=26  Identities=23%  Similarity=0.470  Sum_probs=21.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ..-.+|+||.|+|||++++.++.-+.
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~ri~   64 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWRIV   64 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHHHH
Confidence            35678999999999999999987643

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.00043  Score=42.78  Aligned_cols=26  Identities=23%  Similarity=0.405  Sum_probs=21.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ..-.+|+|+.|.|||++++.|+.-+.
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~ri~   68 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHHHHH
Confidence            34678999999999999999987654

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.62  E-value=0.00053  Score=41.45  Aligned_cols=24  Identities=21%  Similarity=0.279  Sum_probs=19.7

Q ss_pred             cCCCCceEEEecCCCCcchHHHHH
Q psy16868         22 PFDKRHNVVVGRNGSGKSNFFFAI   45 (109)
Q Consensus        22 ~~~~~~~~i~G~NG~GKStll~al   45 (109)
                      .+++.-+.|.|++|+||||+.-++
T Consensus        12 ~~~g~gvli~G~sg~GKS~la~~l   35 (169)
T d1ko7a2          12 DVYGVGVLITGDSGIGKSETALEL   35 (169)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHH
T ss_pred             EECCEEEEEEeCCCCCHHHHHHHH
Confidence            555777899999999999987554

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.00081  Score=41.54  Aligned_cols=25  Identities=16%  Similarity=0.284  Sum_probs=21.6

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ....|.||.|+||||+.++++..+.
T Consensus        25 h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          25 HALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHhcc
Confidence            4578899999999999999987664

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.54  E-value=0.00056  Score=44.08  Aligned_cols=23  Identities=30%  Similarity=0.304  Sum_probs=20.5

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++|||-..+|||||+.+|+..-
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~~   26 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKAG   26 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHTC
T ss_pred             eEEEECCCCCCHHHHHHHHHCCC
Confidence            37899999999999999999763

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=96.51  E-value=0.00066  Score=41.78  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=20.7

Q ss_pred             eEEEecCCCCcchHHHHHHHhhc
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ++++|.-.+|||||+++|.+.+.
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~~~   28 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKILA   28 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHHH
Confidence            68999999999999999987765

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.46  E-value=0.0011  Score=44.61  Aligned_cols=26  Identities=27%  Similarity=0.392  Sum_probs=22.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .....++||+|+|||-|.++|+-++.
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~~~~   93 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAKHLD   93 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CcceeeeCCCCccHHHHHHHHHhhcc
Confidence            45688999999999999999998764

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.40  E-value=0.00059  Score=41.97  Aligned_cols=23  Identities=30%  Similarity=0.320  Sum_probs=20.0

Q ss_pred             eEEEecCCCCcchHHHHHHHhhc
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ++|+|.-.+|||||+++|.+...
T Consensus        11 i~iiGhVd~GKSTL~~~L~~~~~   33 (205)
T d2qn6a3          11 IGVVGHVDHGKTTLVQAITGIWT   33 (205)
T ss_dssp             EEEECSTTSSHHHHHHHHHSCCC
T ss_pred             EEEEEccCCcHHHHHHHHHhhhc
Confidence            78999999999999999986543

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.18  E-value=0.0012  Score=42.41  Aligned_cols=25  Identities=20%  Similarity=0.264  Sum_probs=20.1

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +.++.|.||+|+|||||+-.++...
T Consensus        54 g~itei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          54 GRIVEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHHH
Confidence            5789999999999999975555443

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.03  E-value=0.0017  Score=40.51  Aligned_cols=21  Identities=24%  Similarity=0.322  Sum_probs=18.6

Q ss_pred             eEEEecCCCCcchHHHHHHHh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~   48 (109)
                      ++++|.-++|||||+++|...
T Consensus         6 i~viGHVd~GKTTL~~~Ll~~   26 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLLMD   26 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHHHH
Confidence            688999999999999999653

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.02  E-value=0.0013  Score=44.49  Aligned_cols=25  Identities=24%  Similarity=0.445  Sum_probs=20.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      ..-.+|||++|+|||++++.|+.-+
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHHHH
Confidence            3457899999999999999887654

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.02  E-value=0.0014  Score=42.10  Aligned_cols=23  Identities=30%  Similarity=0.202  Sum_probs=19.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHH
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~   47 (109)
                      ..+++|+|.-|.|||||...+.-
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35788999999999999998753

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.97  E-value=0.0016  Score=43.90  Aligned_cols=21  Identities=38%  Similarity=0.611  Sum_probs=17.8

Q ss_pred             CceEEEecCCCCcchHHHHHH
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQ   46 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~   46 (109)
                      ..+.|+|++|+|||+++..|.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHH
Confidence            558999999999999987554

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.95  E-value=0.0015  Score=42.88  Aligned_cols=25  Identities=24%  Similarity=0.369  Sum_probs=21.9

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      ...++||+|+|||.+.++|+-.+..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~~   79 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLFD   79 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred             EEEEECCCcchHHHHHHHHHHHhcC
Confidence            5678899999999999999998754

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=95.90  E-value=0.002  Score=41.46  Aligned_cols=25  Identities=24%  Similarity=0.275  Sum_probs=22.3

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ....|.||.++|||+++++|..++.
T Consensus       105 n~~~l~G~~~tGKS~f~~~i~~~lg  129 (267)
T d1u0ja_         105 NTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            4677889999999999999999983

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.002  Score=43.16  Aligned_cols=21  Identities=29%  Similarity=0.544  Sum_probs=17.9

Q ss_pred             CCceEEEecCCCCcchHHHHH
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAI   45 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al   45 (109)
                      +.+++|.|+.|+||||++..+
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHH
Confidence            678999999999999987543

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=95.88  E-value=0.0022  Score=40.09  Aligned_cols=22  Identities=18%  Similarity=0.150  Sum_probs=19.3

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++++|.-.+|||||+++|....
T Consensus        12 i~viGHVd~GKSTL~~~Ll~~~   33 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLLHDS   33 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHc
Confidence            6889999999999999996544

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.0023  Score=41.68  Aligned_cols=26  Identities=15%  Similarity=0.293  Sum_probs=22.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      |+..+|+|+.|+|||+|+..|+....
T Consensus        43 GQr~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          43 GQRGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             TCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence            78999999999999999988876543

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0015  Score=42.20  Aligned_cols=23  Identities=22%  Similarity=0.150  Sum_probs=20.0

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      +++|+||-++|||+||..|.+..
T Consensus        34 vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          34 VVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            67789999999999999987643

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=95.79  E-value=0.0018  Score=41.77  Aligned_cols=25  Identities=20%  Similarity=0.495  Sum_probs=18.1

Q ss_pred             CCceEEEecCCCCcchHH-HHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFF-FAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll-~al~~~l   49 (109)
                      ++.+.|.|+.||||||.| +.+..++
T Consensus        24 ~g~~lV~g~aGSGKTt~l~~ri~~ll   49 (318)
T d1pjra1          24 EGPLLIMAGAGSGKTRVLTHRIAYLM   49 (318)
T ss_dssp             SSCEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCccHHHHHHHHHHHHH
Confidence            456788899999999765 4444444

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.68  E-value=0.0021  Score=39.85  Aligned_cols=28  Identities=25%  Similarity=0.326  Sum_probs=24.0

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDE   52 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~   52 (109)
                      ....+|.||.++|||+++.+|..++.+.
T Consensus        53 kn~i~~~GP~~TGKS~f~~sl~~~l~G~   80 (205)
T d1tuea_          53 KNCLVFCGPANTGKSYFGMSFIHFIQGA   80 (205)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHTCE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHhCCE
Confidence            3567889999999999999999998643

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=95.58  E-value=0.0032  Score=36.60  Aligned_cols=25  Identities=12%  Similarity=0.117  Sum_probs=20.4

Q ss_pred             CCceEEEecCCCCcch-HHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSN-FFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKSt-ll~al~~~l   49 (109)
                      |.+.+|+||-.||||| |++.+....
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~~   27 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRLE   27 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHHH
Confidence            4578899999999999 777776654

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.57  E-value=0.0033  Score=40.43  Aligned_cols=26  Identities=23%  Similarity=0.296  Sum_probs=21.5

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +.++-|.||+|||||||+-.++....
T Consensus        57 g~itei~G~~~sGKT~l~l~~~~~aq   82 (268)
T d1xp8a1          57 GRITEIYGPESGGKTTLALAIVAQAQ   82 (268)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEEecCCccchHHHHHHHHHHHH
Confidence            56899999999999999877665543

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=95.52  E-value=0.0018  Score=41.35  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=17.7

Q ss_pred             CceEEEecCCCCcchH-HHHHHHhh
Q psy16868         26 RHNVVVGRNGSGKSNF-FFAIQFVL   49 (109)
Q Consensus        26 ~~~~i~G~NG~GKStl-l~al~~~l   49 (109)
                      +...|+|+.|+||||+ ++.+..++
T Consensus        15 ~~~lI~g~aGTGKTt~l~~rv~~ll   39 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVITNKIAHLI   39 (306)
T ss_dssp             SEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEeeCCccHHHHHHHHHHHHH
Confidence            5577889999999976 45555554

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.52  E-value=0.0033  Score=40.50  Aligned_cols=23  Identities=22%  Similarity=0.209  Sum_probs=19.1

Q ss_pred             CCceEEEecCCCCcchHHHHHHH
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~   47 (109)
                      +.++.|.||+|+|||||+-.++.
T Consensus        60 g~i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          60 GRVIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             SSEEEEECSSSSSHHHHHHHHHH
T ss_pred             ceeEEEecCCCcHHHHHHHHHHH
Confidence            67899999999999999644443

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.41  E-value=0.0044  Score=39.10  Aligned_cols=23  Identities=30%  Similarity=0.296  Sum_probs=19.8

Q ss_pred             eEEEecCCCCcchHHHHHHHhhc
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ++++|.-++|||||+..|.....
T Consensus         9 i~iiGHvD~GKsTl~~~ll~~~g   31 (239)
T d1f60a3           9 VVVIGHVDSGKSTTTGHLIYKCG   31 (239)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHS
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcC
Confidence            68999999999999999976543

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=95.33  E-value=0.0037  Score=40.00  Aligned_cols=23  Identities=17%  Similarity=0.254  Sum_probs=20.1

Q ss_pred             ceEEEecCCCCcchHHHHHHHhh
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l   49 (109)
                      .++++|...+|||||+++|.+--
T Consensus       114 ~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         114 RALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEEecCccchhhhhhhhhccc
Confidence            37899999999999999998743

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.30  E-value=0.0048  Score=40.84  Aligned_cols=23  Identities=17%  Similarity=0.119  Sum_probs=19.9

Q ss_pred             eEEEecCCCCcchHHHHHHHhhc
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ++|=|+=|+||||+++.|.-.+.
T Consensus         8 I~IEG~iGsGKSTl~~~L~~~l~   30 (331)
T d1osna_           8 IYLDGAYGIGKTTAAEEFLHHFA   30 (331)
T ss_dssp             EEEEESSSSCTTHHHHHHHHTTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHh
Confidence            56779999999999999987654

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.28  E-value=0.0024  Score=42.49  Aligned_cols=22  Identities=18%  Similarity=0.101  Sum_probs=19.3

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++|+|.-++|||||+++|....
T Consensus        20 I~iiGhvd~GKTTL~d~Ll~~~   41 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLVQRA   41 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHC
Confidence            7999999999999999996443

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.25  E-value=0.0034  Score=39.74  Aligned_cols=22  Identities=32%  Similarity=0.360  Sum_probs=19.2

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++|+|.-++|||||++.|....
T Consensus        27 i~iiGHVD~GKSTL~~~Ll~~~   48 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNILFLT   48 (245)
T ss_dssp             EEEEECGGGTHHHHHHHHHHHT
T ss_pred             EEEEeeCCCCHHHHHHHHHHHc
Confidence            7889999999999999996544

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=95.04  E-value=0.0063  Score=34.49  Aligned_cols=19  Identities=32%  Similarity=0.244  Sum_probs=15.4

Q ss_pred             CceEEEecCCCCcchHHHH
Q psy16868         26 RHNVVVGRNGSGKSNFFFA   44 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~a   44 (109)
                      ....|.+|.|+|||+++-.
T Consensus         9 ~~~ll~apTGsGKT~~~~~   27 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPA   27 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHH
Confidence            4567889999999998643

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.97  E-value=0.0057  Score=40.52  Aligned_cols=24  Identities=25%  Similarity=0.081  Sum_probs=20.4

Q ss_pred             eEEEecCCCCcchHHHHHHHhhcc
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      ++|=|+=|+||||+++.|.-.+..
T Consensus         9 I~iEG~iGsGKSTl~~~L~~~l~~   32 (333)
T d1p6xa_           9 IYLDGVYGIGKSTTGRVMASAASG   32 (333)
T ss_dssp             EEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             EEEECCccCCHHHHHHHHHHHhcc
Confidence            567799999999999999877653

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=94.82  E-value=0.0051  Score=40.53  Aligned_cols=19  Identities=26%  Similarity=0.475  Sum_probs=16.3

Q ss_pred             CCCceEEEecCCCCcchHH
Q psy16868         24 DKRHNVVVGRNGSGKSNFF   42 (109)
Q Consensus        24 ~~~~~~i~G~NG~GKStll   42 (109)
                      ++++.++.|.+|+|||||-
T Consensus        13 ~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHT
T ss_pred             CCCEEEEEccCCCCccccc
Confidence            3678899999999999964

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.65  E-value=0.013  Score=36.91  Aligned_cols=26  Identities=19%  Similarity=0.225  Sum_probs=21.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ...+.|.|+.|+||+++.++|...-.
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~~s~   48 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHKLSD   48 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCEEEECCCCcCHHHHHHHHHHhcC
Confidence            45678899999999999999976543

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=94.63  E-value=0.0057  Score=40.18  Aligned_cols=19  Identities=26%  Similarity=0.436  Sum_probs=16.3

Q ss_pred             CCCceEEEecCCCCcchHH
Q psy16868         24 DKRHNVVVGRNGSGKSNFF   42 (109)
Q Consensus        24 ~~~~~~i~G~NG~GKStll   42 (109)
                      ++++.++.|-+|+|||||-
T Consensus        13 ~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          13 KGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TSCEEEEECSTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            3678899999999999964

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.37  E-value=0.0067  Score=40.12  Aligned_cols=22  Identities=18%  Similarity=0.138  Sum_probs=17.6

Q ss_pred             eEEEecCCCCcchHHHHHHHhh
Q psy16868         28 NVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        28 ~~i~G~NG~GKStll~al~~~l   49 (109)
                      ++|=|+=|+||||+++.|.-.+
T Consensus         7 I~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           7 VYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEECSCTTSSHHHHHHHHTC--
T ss_pred             EEEECCcCCCHHHHHHHHHHHh
Confidence            5667999999999999997544

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.19  E-value=0.0083  Score=39.54  Aligned_cols=19  Identities=26%  Similarity=0.457  Sum_probs=16.7

Q ss_pred             CCCceEEEecCCCCcchHH
Q psy16868         24 DKRHNVVVGRNGSGKSNFF   42 (109)
Q Consensus        24 ~~~~~~i~G~NG~GKStll   42 (109)
                      ++++.++.|-+|+|||||-
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            4678899999999999986

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.03  E-value=0.012  Score=35.95  Aligned_cols=26  Identities=8%  Similarity=-0.021  Sum_probs=21.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      +....|.||+|+||||+...++-.+.
T Consensus        15 ~~~~l~~G~~g~gk~~~a~~l~~~i~   40 (198)
T d2gnoa2          15 GISILINGEDLSYPREVSLELPEYVE   40 (198)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHh
Confidence            35678899999999999999887653

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.95  E-value=0.0095  Score=34.22  Aligned_cols=24  Identities=25%  Similarity=0.224  Sum_probs=18.1

Q ss_pred             CCceEEEecCCCCcchHH-HHHHHh
Q psy16868         25 KRHNVVVGRNGSGKSNFF-FAIQFV   48 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll-~al~~~   48 (109)
                      |.+.+|+||-.|||||-| +.+...
T Consensus         2 G~L~li~GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           2 GQIQVILGPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEEecccCHHHHHHHHHHHHH
Confidence            467899999999999954 444443

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=93.78  E-value=0.013  Score=32.60  Aligned_cols=18  Identities=28%  Similarity=0.322  Sum_probs=14.4

Q ss_pred             CCceEEEecCCCCcchHH
Q psy16868         25 KRHNVVVGRNGSGKSNFF   42 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll   42 (109)
                      +..++|..|.|+|||..+
T Consensus         7 ~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           7 GMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TCEEEECCCTTSSTTTTH
T ss_pred             CCcEEEEcCCCCChhHHH
Confidence            466778899999999654

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.57  E-value=0.02  Score=36.87  Aligned_cols=24  Identities=17%  Similarity=0.203  Sum_probs=20.6

Q ss_pred             CCceEEEecCCCCcchHHHHHHHh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFV   48 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~   48 (109)
                      |+..+|+|+.|+|||+|+..|.--
T Consensus        68 GQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          68 GGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEeeCCCCCCHHHHHHHHHHH
Confidence            788999999999999997776544

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=93.56  E-value=0.02  Score=34.42  Aligned_cols=26  Identities=19%  Similarity=0.161  Sum_probs=21.8

Q ss_pred             ceEEEecC-CCCcchHHHHHHHhhccC
Q psy16868         27 HNVVVGRN-GSGKSNFFFAIQFVLSDE   52 (109)
Q Consensus        27 ~~~i~G~N-G~GKStll~al~~~l~~~   52 (109)
                      ...|.|-+ |+||||+.-.|+.++...
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~aLa~~   29 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQAAKAA   29 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHHC
Confidence            46789997 999999999998888643

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=93.38  E-value=0.021  Score=36.14  Aligned_cols=16  Identities=31%  Similarity=0.488  Sum_probs=14.0

Q ss_pred             CCceEEEecCCCCcch
Q psy16868         25 KRHNVVVGRNGSGKSN   40 (109)
Q Consensus        25 ~~~~~i~G~NG~GKSt   40 (109)
                      ++.+.|.+|.|||||+
T Consensus         9 ~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           9 KRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             TCEEEECCCTTSSTTT
T ss_pred             CCcEEEEECCCCCHHH
Confidence            5677889999999996

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.90  E-value=0.032  Score=35.13  Aligned_cols=28  Identities=21%  Similarity=0.341  Sum_probs=23.7

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDE   52 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~   52 (109)
                      +.++.+.|.-|.||||+.-+|+..+...
T Consensus         8 p~~i~~sGKGGVGKTTvaa~lA~~lA~~   35 (296)
T d1ihua1           8 PPYLFFTGKGGVGKTSISCATAIRLAEQ   35 (296)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCcChHHHHHHHHHHHHHHC
Confidence            4678889999999999999998887543

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.77  E-value=0.025  Score=32.00  Aligned_cols=24  Identities=8%  Similarity=-0.013  Sum_probs=19.4

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .+.+.|-+|+|||||.+||.--+.
T Consensus         8 ~i~~tg~~~~gk~~ia~al~~~l~   31 (122)
T d1g8fa3           8 SIVLGNSLTVSREQLSIALLSTFL   31 (122)
T ss_dssp             EEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHH
Confidence            355679999999999999965553

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=92.65  E-value=0.02  Score=33.13  Aligned_cols=24  Identities=33%  Similarity=0.243  Sum_probs=18.5

Q ss_pred             CCceEEEecCCCCcchHH-HHHHHh
Q psy16868         25 KRHNVVVGRNGSGKSNFF-FAIQFV   48 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll-~al~~~   48 (109)
                      |.+.+|+||--|||||-| +.+...
T Consensus         7 G~l~lI~GpMfSGKTteLi~~~~~~   31 (141)
T d1xx6a1           7 GWVEVIVGPMYSGKSEELIRRIRRA   31 (141)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eeEEEEEeccccHHHHHHHHHHHHh
Confidence            678899999999999954 444333

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=91.61  E-value=0.044  Score=39.63  Aligned_cols=26  Identities=19%  Similarity=0.327  Sum_probs=21.1

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      ...++|.|++|||||.-.+.|...+.
T Consensus       125 nQsIiisGeSGaGKTe~~k~il~yL~  150 (712)
T d1d0xa2         125 NQSLLITGESGAGKTENTKKVIQYLA  150 (712)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            46788999999999999887766553

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.55  E-value=0.052  Score=35.02  Aligned_cols=23  Identities=13%  Similarity=0.394  Sum_probs=19.7

Q ss_pred             CCceEEEecCCCCcchHHHHHHH
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQF   47 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~   47 (109)
                      |+..+|+|+.|+|||+|+..+..
T Consensus        68 GQr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          68 GQRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             TCBCEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEeecCCCCChHHHHHHHHH
Confidence            78899999999999999865543

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=91.49  E-value=0.046  Score=39.31  Aligned_cols=25  Identities=24%  Similarity=0.368  Sum_probs=20.5

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      ...++|.|++|||||.-.+.|.-.+
T Consensus        86 ~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          86 NQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4678889999999999988775554

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.35  E-value=0.044  Score=33.76  Aligned_cols=19  Identities=26%  Similarity=0.391  Sum_probs=15.9

Q ss_pred             CCceEEEecCCCCcchHHH
Q psy16868         25 KRHNVVVGRNGSGKSNFFF   43 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~   43 (109)
                      ++-++++.|.|+|||...-
T Consensus        58 g~~~~i~apTGsGKT~~~~   76 (237)
T d1gkub1          58 KESFAATAPTGVGKTSFGL   76 (237)
T ss_dssp             TCCEECCCCBTSCSHHHHH
T ss_pred             CCCEEEEecCCChHHHHHH
Confidence            6778899999999997643

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.27  E-value=0.053  Score=32.22  Aligned_cols=20  Identities=25%  Similarity=0.320  Sum_probs=14.5

Q ss_pred             CceEEEecCCCCcchHHHHH
Q psy16868         26 RHNVVVGRNGSGKSNFFFAI   45 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al   45 (109)
                      .-..++.|.|+|||.+.-.+
T Consensus        24 ~n~lv~~pTGsGKT~i~~~~   43 (200)
T d1wp9a1          24 TNCLIVLPTGLGKTLIAMMI   43 (200)
T ss_dssp             SCEEEECCTTSCHHHHHHHH
T ss_pred             CCeEEEeCCCCcHHHHHHHH
Confidence            44668899999999754433

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=91.11  E-value=0.064  Score=33.48  Aligned_cols=25  Identities=24%  Similarity=0.282  Sum_probs=21.3

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      .++|.|.=|+||||+.-.|+..+..
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA~   27 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLHA   27 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHHh
Confidence            4678999999999999888887754

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=91.03  E-value=0.054  Score=39.08  Aligned_cols=25  Identities=20%  Similarity=0.283  Sum_probs=20.5

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      ...++|.|++|||||.-.+.|.-.+
T Consensus        91 ~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          91 DQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4678899999999999987776555

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=90.98  E-value=0.057  Score=39.49  Aligned_cols=25  Identities=16%  Similarity=0.258  Sum_probs=19.9

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      ...++|.|++|||||.-.+.|.-.+
T Consensus       123 ~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         123 NQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4568889999999998877665544

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=90.95  E-value=0.05  Score=34.92  Aligned_cols=25  Identities=12%  Similarity=0.255  Sum_probs=20.7

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      |+..+|+|+.|+|||+|+..+....
T Consensus        67 GQr~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          67 GQRELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             TCBCBEEESSSSSHHHHHHHHHHTC
T ss_pred             CceEeeccCCCCChHHHHHHHHhhh
Confidence            7889999999999999987654443

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=90.94  E-value=0.062  Score=33.63  Aligned_cols=28  Identities=29%  Similarity=0.431  Sum_probs=22.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhccC
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSDE   52 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~~   52 (109)
                      ..++++.|.=|+||||+.-.|+..+...
T Consensus        20 ~~iii~sGKGGVGKTT~a~nLA~~lA~~   47 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAIAVRLADM   47 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            3567778999999999998888877543

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=90.75  E-value=0.073  Score=31.97  Aligned_cols=25  Identities=28%  Similarity=0.376  Sum_probs=22.3

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      .++++|.|-|  ||||.-.+|..++..
T Consensus        14 ~~~iAITGTn--GKTTt~~~l~~iL~~   38 (207)
T d1j6ua3          14 KEEFAVTGTD--GKTTTTAMVAHVLKH   38 (207)
T ss_dssp             CCEEEEECSS--SHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCC--CHHHHHHHHHHHHHh
Confidence            5789999999  899999999998863

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=89.72  E-value=0.082  Score=38.21  Aligned_cols=25  Identities=20%  Similarity=0.199  Sum_probs=20.5

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      ...++|.|++|||||.-.+.|...+
T Consensus        94 ~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          94 NQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4678889999999999988776554

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.69  E-value=0.047  Score=32.76  Aligned_cols=18  Identities=11%  Similarity=0.172  Sum_probs=15.0

Q ss_pred             CCceEEEecCCCCcchHH
Q psy16868         25 KRHNVVVGRNGSGKSNFF   42 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll   42 (109)
                      +.-..|..|.|+|||+..
T Consensus        40 ~~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          40 GKNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             CSCEEEECSSHHHHHHHH
T ss_pred             CCCEEEEcCCCCchhHHH
Confidence            666788899999999863

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.57  E-value=0.095  Score=31.68  Aligned_cols=26  Identities=31%  Similarity=0.544  Sum_probs=21.0

Q ss_pred             CceEEE-ecCCCCcchHHHHHHHhhcc
Q psy16868         26 RHNVVV-GRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        26 ~~~~i~-G~NG~GKStll~al~~~l~~   51 (109)
                      .++++. +.-|+||||+.-.|+..+..
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~la~   29 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVALGD   29 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHh
Confidence            456777 77899999999988887763

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=89.48  E-value=0.093  Score=38.29  Aligned_cols=25  Identities=20%  Similarity=0.397  Sum_probs=19.8

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhh
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVL   49 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l   49 (109)
                      ...++|.|++|||||.-.+.|.-.+
T Consensus       121 nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2         121 NQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3678889999999999876665554

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.32  E-value=0.11  Score=31.15  Aligned_cols=20  Identities=35%  Similarity=0.283  Sum_probs=17.7

Q ss_pred             ceEEEecCCCCcchHHHHHH
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQ   46 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~   46 (109)
                      ++.|+|...||||...+.+.
T Consensus         1 iiLVtGGarSGKS~~AE~l~   20 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALI   20 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHH
T ss_pred             CEEEECCCCccHHHHHHHHH
Confidence            46899999999999999875

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=89.19  E-value=0.098  Score=31.15  Aligned_cols=25  Identities=24%  Similarity=0.244  Sum_probs=21.7

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhccC
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSDE   52 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~~   52 (109)
                      .+++|.|-|  ||||.-.+|..++...
T Consensus         3 kvI~VTGTn--GKTTt~~mi~~iL~~~   27 (214)
T d1gg4a4           3 RVVALTGSS--GKTSVKEMTAAILSQC   27 (214)
T ss_dssp             EEEEEECSS--CHHHHHHHHHHHHTTT
T ss_pred             CEEEEeCCC--cHHHHHHHHHHHHHhC
Confidence            578899999  8999999999998743

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=89.11  E-value=0.12  Score=30.82  Aligned_cols=25  Identities=20%  Similarity=0.177  Sum_probs=22.1

Q ss_pred             CCceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         25 KRHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        25 ~~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      ..+++|.|-|  ||||.-.+|..++..
T Consensus        11 ~~vI~VTGT~--GKTTt~~~l~~iL~~   35 (204)
T d2jfga3          11 APIVAITGSN--GKSTVTTLVGEMAKA   35 (204)
T ss_dssp             SCEEEEECSS--SHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCC--CHHHHHHHHHHHHHh
Confidence            5688999999  899999999999864

>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=87.02  E-value=0.16  Score=30.44  Aligned_cols=24  Identities=21%  Similarity=0.325  Sum_probs=20.6

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhcc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~~   51 (109)
                      ..++|.|-|  ||||.-.+|..++..
T Consensus        13 ~~I~ITGTn--GKTTt~~~l~~iL~~   36 (215)
T d1p3da3          13 HGIAVAGTH--GKTTTTAMISMIYTQ   36 (215)
T ss_dssp             EEEEEESSS--CHHHHHHHHHHHHHH
T ss_pred             CEEEEECCC--CHHHHHHHHHHHHHh
Confidence            468999999  899999999988853

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=86.11  E-value=0.19  Score=30.25  Aligned_cols=23  Identities=26%  Similarity=0.147  Sum_probs=20.1

Q ss_pred             CceEEEecCCCCcchHHHHHHHhhc
Q psy16868         26 RHNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        26 ~~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .+++|.|-|  ||||.-++|+.+|.
T Consensus         6 ~vI~ITGT~--GKTTt~~~l~~iL~   28 (234)
T d1e8ca3           6 RLVGVTGTN--GKTTTTQLLAQWSQ   28 (234)
T ss_dssp             EEEEEESSS--CHHHHHHHHHHHHH
T ss_pred             eEEEEECCC--cHHHHHHHHHHHHH
Confidence            467889999  99999999998885

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=85.76  E-value=0.24  Score=31.11  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=19.4

Q ss_pred             ceEEEecCCCCcchHHHHHHHhhc
Q psy16868         27 HNVVVGRNGSGKSNFFFAIQFVLS   50 (109)
Q Consensus        27 ~~~i~G~NG~GKStll~al~~~l~   50 (109)
                      .++|.|.=|.||||+.--|+..+.
T Consensus         4 ~IaisgKGGVGKTT~a~NLA~~LA   27 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNLVAALA   27 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            457789999999999877777664

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.97  E-value=0.36  Score=28.90  Aligned_cols=25  Identities=24%  Similarity=0.457  Sum_probs=19.7

Q ss_pred             ceEEE-ecCCCCcchHHHHHHHhhcc
Q psy16868         27 HNVVV-GRNGSGKSNFFFAIQFVLSD   51 (109)
Q Consensus        27 ~~~i~-G~NG~GKStll~al~~~l~~   51 (109)
                      +++|+ +.-|+||||+.-.|+..+..
T Consensus         3 vIav~s~KGGvGKTtia~nlA~~la~   28 (232)
T d1hyqa_           3 TITVASGKGGTGKTTITANLGVALAQ   28 (232)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHh
Confidence            34555 88899999999988888753

>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.76  E-value=0.37  Score=31.89  Aligned_cols=22  Identities=14%  Similarity=0.259  Sum_probs=17.0

Q ss_pred             cCCCCceEEEe--cCCCCcchHHH
Q psy16868         22 PFDKRHNVVVG--RNGSGKSNFFF   43 (109)
Q Consensus        22 ~~~~~~~~i~G--~NG~GKStll~   43 (109)
                      +..++.+-|.|  |++||||+|.-
T Consensus        13 ~P~g~~~yvaaAFPSaCGKTnlAM   36 (363)
T d1khba1          13 NPEGEKKYLAAAFPSACGKTNLAM   36 (363)
T ss_dssp             CTTSCEEEEEEECCTTSCHHHHHT
T ss_pred             CCCCCEEEEEEecCccccchhHHH
Confidence            33467888887  89999999754