Psyllid ID: psy16876

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120----

MEKCLLRVPEGKFCRSFPQNQIKNMMAHAQKMIEERKKALLALKGTAPVAPTPVVPAGVTPAIIGSAKIPPLMPPAPPSTTAEKDNATYEKAMKIAQLQAQIQSKLSTGVLKPSVPGAKPPGAPATDKPTPLILDSEGRTIDITGKQVQLTHVVPTLKANIRAKKREEFHEKLKEKPTEDLSESKFFDPRISAKSSVRTKRALKFHEPGKFQQLAEQLRVKAQLAKLQADISKNARKTGISSATKLALIAPKMEDDQDEMPEVEWWDAVIMVEETYEKENNIKTSAITNLVEHPIQMKPPSDMAKPVYMPVFLTDKERKKLRRQNRREAWKEEQEKIRLGLEPPPEPKLRISNLMRVLGTEAVQDPTKMEAHVRAQMAKRQKDHEEANASRKLTVEQKREKKIRKIKEDTSLEVHVALRISNLMRVLGTEAVQDPTKMEAHVRAQMAKRQKDHEEANASRKLTVEQKREKKIRKIKEDTSLEVHVAVYRVDDFSNPSKKFKVETNCNQLFMTGAVVMYKDCNVIVVEGGPKQQSKFKRLMMHRIKWEEDMIKSNEGKETPNKCVLVWELGSLSVLMSDIMISGFTTGTAILVILSQIKHVFGIKVKRHIGPFNVIYTLIDVAENIHKTNYVAFGVVVILVSVLIIYNDHFKSKIQKNISFPIPTEMIVIVAGALLSSILDVKHKYNLSNVGKIPIGLPSPQPPPFYLIPKLMLDGLFISIVAFSINISMASILAKKKYKIDSNQELLASGVSNIFASFFSCIPFASSLSRSLVQLQVGGKTQLASGVSCVLLVLILLYIGPFFETLPYCVLTSIVIVAVKGMLNQVKDLKLAFKESYTEACVWCLTFLSVVLLDVDYGLGIGVLCSLIFVVVTGQKVMVYKLGRLIDSNIYVEEDFYESAIDVPGIVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHIVKLLEPVKQVNSHPLLNQDDKDVGPKIFNKYKPFKQNEFDEIYHHTEYKKKHLSESLKNKLRSKFKIVNIVLSLFPILEWLPNYNWKNDLSHDMVSGFTVAVLHIPQGMAYSSLGGVPPIVGIYMAVFPVIIYMCMGTSRHISMGTFSV

ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEccccccccccccEEEEcccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHcHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccccEEEEEEEEcHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccEEEEEEEEcccccccccccccccccccEEEEEEEEEcccEEEEEccccHHHHHHHHHHHccccHHHHHccccccccccccEEEEEEccEEEEEccHHHHHHcccHHHHHHHHHccccHHccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcHHHHHccccccccHHHHHHHHHHHHHHHcccccccccEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccccccccccccEEEEEEcccEEEccHHHHHHHHHHHHHcccccccEEEEEccccccccHHHHHHHHHHHHHHHHcccEEEEEEccccHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcHHHHHHHHHccccccEEEHHHHHHHHHHHHHccccccEEEcccc

ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEcccccEEcccccEEEEccccccHHHHHHHHHHHHHHHHHHccccccHHHcccccccEEccccccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccHccccccccEEEEcEEEEcccccccccccccccEHcccccccccccccccccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccEEEEEEEEEccccccccEEEEEcHHHEEEcEEEEEEcccEEEEEEccHHHHHHHHHHHHHHEcccHcccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEcccHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccEEEEcHHHcccccccccEEEEEEcccEHHccHHHHHHHHHHHHHccccccEEEEEEccccccccHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHcccccccccccccEEEEccccccHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccEEEEEEccccHEHEEHHcccccccEccEcc

mekcllrvpegkfcrsfpqNQIKNMMAHAQKMIEERKKALLALkgtapvaptpvvpagvtpaiigsakipplmppappsttaekdNATYEKAMKIAQLQAQIQSKlstgvlkpsvpgakppgapatdkptplildsegrtiditgkqvqLTHVVPTLKANIRAKKREEFHEKLkekptedlseskffdprisakssvrtkralkfhepgkFQQLAEQLRVKAQLAKLQADISKNARKTGISSATKLALiapkmeddqdempevewWDAVIMVEETYEKENNIKTSAITNlvehpiqmkppsdmakpvympvfltdKERKKLRRQNRREAWKEEQEKIrlglepppepklrISNLMRVlgteavqdptkMEAHVRAQMAKRQKDHEEANASRKLTVEQKREKKIRKIKEDTSLEVHVALRISNLMRVlgteavqdptkMEAHVRAQMAKRQKDHEEANASRKLTVEQKREKKIRKIKEDTSLEVHVAVYrvddfsnpskkfkvetNCNQLFMTGAVVMYKDCnvivveggpkqQSKFKRLMMHRIKWEEDMiksnegketpnkCVLVWELGSLSVLMSDIMISGFTTGTAILVILSQIKHVFGIkvkrhigpfnVIYTLIDVAENIHKTNYVAFGVVVILVSVLIIYNDHFkskiqknisfpiptEMIVIVAGALLSSIldvkhkynlsnvgkipiglpspqpppfylipklmlDGLFISIVAFSINISMASILAKKKYKIDSNQELLASGVSNIFASFFSCIPFASSLSRSLVQLQvggktqlasGVSCVLLVLILLYIgpffetlpycvLTSIVIVAVKGMLNQVKDLKLAFKESYTEACVWCLTFLSVVLLDVDYGLGIGVLCSLIFVVVTGQKVMVYKLGrlidsniyveedfyesaidvpGIVILRIIggmnfinkdKVFHKISklslssepypkQIILDMMslssvdtsTVKSFLDLYKELMEQGISLHIVKLlepvkqvnshpllnqddkdvgpkifnkykpfkqnefdeiyhhTEYKKKHLSESLKNKLRSKFKIVNIVLSLFpilewlpnynwkndlshdmvSGFTVAVLHIpqgmaysslggvppivgIYMAVFPVIIYMCMGtsrhismgtfsv

mekcllrvpegkfcrsfpqNQIKNMMAHAQKMIEERKKALLALKGTAPVAPTPVVPAGVTPAIIGSAKIPPLMPPAPPSTTAEKDNATYEKAMKIAQLQAQIQSKLSTGVLKPsvpgakppgapatdkptplILDSEGRTIditgkqvqlthvvptlkanirakkREEFheklkekptedlseskffdprisakssvrtKRALKFHEPGKFQQLAEQLRVKAQLAKLQADisknarktgissatklALIAPkmeddqdempevEWWDAVIMVEETYEKENNIKTSAITNLVehpiqmkppsdmakPVYMPVfltdkerkklRRQNRREAWKEEqekirlglepppepklrISNLMRVLGTEAVQDPTKMEAHVRAQMAkrqkdheeanasrkltveqkrekkirkikedtslevhVALRISNLMRVLGTEAVQDPTKMEAHVRAQMAkrqkdheeanasrkltveqkrekkirkikedtslevhvavyrvddfsnpskkfkveTNCNQLFMTGAVVMYKDCNVIVVEggpkqqskfkRLMMHRIKWEEDmiksnegketpnKCVLVWELGSLSVLMSDIMISGFTTGTAILVILSQIKHVFGIKVKRHIGPFNVIYTLIDVAENIHKTNYVAFGVVVILVSVLIIYNDHFKSKIQKNISFPIPTEMIVIVAGALLSSILDVKHKYNLSNVGKIPIGLPSPQPPPFYLIPKLMLDGLFISIVAFSINISMASILAKKKYKIDSNQELLASGVSNIFASFFSCIPFASSLSRSLVQLQVGGKTQLASGVSCVLLVLILLYIGPFFETLPYCVLTSIVIVAVKGMLNQVKDLKLAFKESYTEACVWCLTFLSVVLLDVDYGLGIGVLCSLIFVVVTGQKVMVYKLGRLIDSNIYVEEDFYESAIDVPGIVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHIVKLLEPVKQVNshpllnqddkdvgpKIFNKYKPFKQNEFDEIYHHTEYKKKHLSESLKNKLRSKFKIVNIVLSLFPILEWLPNYNWKNDLSHDMVSGFTVAVLHIPQGMAYSSLGGVPPIVGIYMAVFPVIIYMCMGTSRHISMGTFSV

MEKCLLRVPEGKFCRSFPQNQIKNMMAHAQKMIEERKKALLALKgtapvaptpvvpagvtpaIIGSAKIpplmppappSTTAEKDNATYEKAMKIAQLQAQIQSKLSTGVLKPSVPGAKPPGAPATDKPTPLILDSEGRTIDITGKQVQLTHVVPTLKANIRAKKREEFHEKLKEKPTEDLSESKFFDPRISAKSSVRTKRALKFHEPGKFQQLAEQLRVKAQLAKLQADISKNARKTGISSATKLALIAPKMEDDQDEMPEVEWWDAVIMVEETYEKENNIKTSAITNLVEHPIQMKPPSDMAKPVYMPVFLTDKERKKLRRQNRREAWKEEQEKIRLGLEPPPEPKLRISNLMRVLGTEAVQDPTKMEAHVRAQMAKRQKDHEEANASRKLTVEQkrekkirkikeDTSLEVHVALRISNLMRVLGTEAVQDPTKMEAHVRAQMAKRQKDHEEANASRKLTVEQkrekkirkikeDTSLEVHVAVYRVDDFSNPSKKFKVETNCNQLFMTGAVVMYKDCNVIVVEGGPKQQSKFKRLMMHRIKWEEDMIKSNEGKETPNKCVLVWELGSLSVLMSDIMISGFTTGTAILVILSQIKHVFGIKVKRHIGPFNVIYTLIDVAENIHKTNYVAFGvvvilvsvliiYNDHFKSKIQKNISFPIPTEMIVIVAGALLSSILDVKHKYNLSNVGKIpiglpspqpppFYLIPKLMLDGLFISIVAFSINISMASILAKKKYKIDSNQELLASGVSNIFASFFSCIPFAsslsrslvqlqvGGKTQLASGVSCVLLVLILLYIGPFFETLPYCVLTSIVIVAVKGMLNQVKDLKLAFKESYTEACVWCLTFLSVVLLDVDYGLGIGVLCSLIFVVVTGQKVMVYKLGRLIDSNIYVEEDFYESAIDVPGIVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHIVKLLEPVKQVNSHPLLNQDDKDVGPKIFNKYKPFKQNEFDEIYHHTEYKKKHLSESLKNKLRSKFKIVNIVLSLFPILEWLPNYNWKNDLSHDMVSGFTVAVLHIPQGMAYSSLGGVPPIVGIYMAVFPVIIYMCMGTSRHISMGTFSV

*******V**GKFCRSF*********************ALLALKGTAPVAPTPVVPAGVTPAII**************************************************************************RTIDITGKQVQLTHVVPTLKAN*****************************************************************************************************EVEWWDAVIMVEETYEKENNIKTSAITNLVE**************VYMPVFL**************************************************************************************************LEVHVALRISNLMRVLGT**************************************************SLEVHVAVYRVDDFSNPSKKFKVETNCNQLFMTGAVVMYKDCNVIVVEGGP****KFKRLMMHRIKWEEDM*********PNKCVLVWELGSLSVLMSDIMISGFTTGTAILVILSQIKHVFGIKVKRHIGPFNVIYTLIDVAENIHKTNYVAFGVVVILVSVLIIYNDHFKSKIQKNISFPIPTEMIVIVAGALLSSILDVKHKYNLSNVGKIPIGLPSPQPPPFYLIPKLMLDGLFISIVAFSINISMASILAKKKYKIDSNQELLASGVSNIFASFFSCIPFASSLSRSLVQLQVGGKTQLASGVSCVLLVLILLYIGPFFETLPYCVLTSIVIVAVKGMLNQVKDLKLAFKESYTEACVWCLTFLSVVLLDVDYGLGIGVLCSLIFVVVTGQKVMVYKLGRLIDSNIYVEEDFYESAIDVPGIVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHIVKLLEPVKQVNSHPLLNQ**KDVGPKIFNKYKPFKQNEFDEIYHHTEYKKKHLSESLKNKLRSKFKIVNIVLSLFPILEWLPNYNWKNDLSHDMVSGFTVAVLHIPQGMAYSSLGGVPPIVGIYMAVFPVIIYMCMGTSRHI*******

***************************************************************************************TYEKAMKIAQLQAQIQS*L*************************LILDSEGRTIDITGKQVQLTHVVPTLKANIRAK**************************I************KFHEPGKFQQLAEQLRV**********************ATKLALIAPKME**QDEMPEVEWWDAVIMVEETYEKENNIKTSAITNLVEHPIQMKPPSDMAKPVYMPVFLTDKE***************************PEPKLRISNLMRVLGTEAVQDPTKMEA**************************************TSLEVHVALRISNLMRVLGTEAVQDPTKMEAHVR***********************K**KKIRKIKEDTSLEVHVAVYRVDDFSNPSKKFKVETNCNQLFMTGAVVMYKDCNVIVVEGGPKQQSKFKRLMMHRIKWEEDMIKSNEGKETPNKCVLVWELGSLSVLMSDIMISGFTTGTAILVILSQIKHVFGIKVKRHIGPFNVIYTLIDVAENIHKTNYVAFGVVVILVSVLIIYNDHFKSKIQKNISFPIPTEMIVIVAGALLSSILDVKHKYNLSNVGKIPIGLPSPQPPPFYLIPKLMLDGLFISIVAFSINISMASILAKKKYKIDSNQELLASGVSNIFASFFSCIPFASSLSRSLVQLQVGGKTQLASGVSCVLLVLILLYIGPFFETLPYCVLTSIVIVAVKGMLNQVKDLKLAFKESYTEACVWCLTFLSVVLLDVDYGLGIGVLCSLIFVVVTGQKVMVYKLGRLIDSNIYVEEDFYESAIDVPGIVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHIVKLLEPVKQVNSHPLLNQDDKDVGPKIFNKYKPFKQNEFDEIYHHTEYKKKHLSESLKNKLRSKFKIVNIVLSLFPILEWLPNYNWKNDLSHDMVSGFTVAVLHIPQGMAYSSLGGVPPIVGIYMAVFPVIIYMCMGTSRHISMGTFSV

MEKCLLRVPEGKFCRSFPQNQIKNMMAHAQKMIEERKKALLALKGTAPVAPTPVVPAGVTPAIIGSAKIPPLMPPAPPSTTAEKDNATYEKAMKIAQLQAQIQSKLSTGVLKPSVPGAKPPGAPATDKPTPLILDSEGRTIDITGKQVQLTHVVPTLKANIRAKKREEFHE***********ESKFFDPRISAKSSVRTKRALKFHEPGKFQQLAEQLRVKAQLAKLQADISKNARKTGISSATKLALIAPKMEDDQDEMPEVEWWDAVIMVEETYEKENNIKTSAITNLVEHPIQMKPPSDMAKPVYMPVFLTDKERKK**************EKIRLGLEPPPEPKLRISNLMRVLGTEAVQDPTK*********************************KIRKIKEDTSLEVHVALRISNLMRVLGTEAVQDPTK*********************************KIRKIKEDTSLEVHVAVYRVDDFSNPSKKFKVETNCNQLFMTGAVVMYKDCNVIVVEGGPKQQSKFKRLMMHRIKWEEDMIKSNEGKETPNKCVLVWELGSLSVLMSDIMISGFTTGTAILVILSQIKHVFGIKVKRHIGPFNVIYTLIDVAENIHKTNYVAFGVVVILVSVLIIYNDHFKSKIQKNISFPIPTEMIVIVAGALLSSILDVKHKYNLSNVGKIPIGLPSPQPPPFYLIPKLMLDGLFISIVAFSINISMASILAKKKYKIDSNQELLASGVSNIFASFFSCIPFASSLSRSLVQLQVGGKTQLASGVSCVLLVLILLYIGPFFETLPYCVLTSIVIVAVKGMLNQVKDLKLAFKESYTEACVWCLTFLSVVLLDVDYGLGIGVLCSLIFVVVTGQKVMVYKLGRLIDSNIYVEEDFYESAIDVPGIVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHIVKLLEPVKQVNSHPLLNQDDKDVGPKIFNKYKPFKQNEFDEIYHHTEYKKKHLSESLKNKLRSKFKIVNIVLSLFPILEWLPNYNWKNDLSHDMVSGFTVAVLHIPQGMAYSSLGGVPPIVGIYMAVFPVIIYMCMGTSRHISMGTFSV

***CL*R*PEGKFCRSFPQNQIKNMMAHAQKMIEERKKALLALK**************************************EKDNATYEKAMKIAQLQAQIQSKLSTGVLKPSVPGAKPPGAPATDKPTPLILDSEGRTIDITGKQVQLTHVVPTLKANIRAKKREEFHEKLKEKPTEDL*ESKFFDPRISAKSSVRTKRALKFHEPGKFQQLAEQLRVKAQLAKLQADISKNARKTGISSATKLALIAPKMEDDQDEMPEVEWWDAVIMVEETYEKENNIKTSAITNLVEHPIQMKPPSDMAKPVYMPVFLTDKERKKLRRQNRREAWKEEQEKIRLGLEPPPEPKLRISNLMRVLGTEAVQDPTKMEAHVRAQMAKRQKDHEEANASRKLTVEQKREKKIRKIKEDTSLEVHVALRISNLMRVLGTEAVQDPTKMEAHVRAQMAKRQKDHEEANASRKLTVEQKREKKIRKIKEDTSLEVHVAVYRVDDFSNPSKKFKVETNCNQLFMTGAVVMYKDCNVIVVEGGPKQQSKFKRLMMHRIKWEEDMIKSNEGKETPNKCVLVWELGSLSVLMSDIMISGFTTGTAILVILSQIKHVFGIKVKRHIGPFNVIYTLIDVAENIHKTNYVAFGVVVILVSVLIIYNDHFKSKIQKNISFPIPTEMIVIVAGALLSSILDVKHKYNLSNVGKIPIGLPSPQPPPFYLIPKLMLDGLFISIVAFSINISMASILAKKKYKIDSNQELLASGVSNIFASFFSCIPFASSLSRSLVQLQVGGKTQLASGVSCVLLVLILLYIGPFFETLPYCVLTSIVIVAVKGMLNQVKDLKLAFKESYTEACVWCLTFLSVVLLDVDYGLGIGVLCSLIFVVVTGQKVMVYKLGRLIDSNIYVEEDFYESAIDVPGIVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHIVKLLEPVKQVNSHPLLNQDDKDVGPKIFNKYKPFKQNEFDEIYHHTEYKKKHLSESLKNKLRSKFKIVNIVLSLFPILEWLPNYNWKNDLSHDMVSGFTVAVLHIPQGMAYSSLGGVPPIVGIYMAVFPVIIYMCMGTSRHISMGTFSV

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1124	2.2.26 [Sep-21-2011]
Q922U1		683	U4/U6 small nuclear ribon	yes	N/A	0.347	0.572	0.550	1e-113
Q5R5F1		683	U4/U6 small nuclear ribon	yes	N/A	0.347	0.572	0.546	1e-112
O43395		683	U4/U6 small nuclear ribon	yes	N/A	0.347	0.572	0.546	1e-112
Q2KIA6		683	U4/U6 small nuclear ribon	yes	N/A	0.347	0.572	0.546	1e-112
Q5ZJ85		684	U4/U6 small nuclear ribon	yes	N/A	0.348	0.573	0.541	1e-109
P58743		744	Prestin OS=Homo sapiens G	no	N/A	0.315	0.477	0.371	1e-64
Q9JKQ2		744	Prestin OS=Meriones ungui	N/A	N/A	0.315	0.477	0.369	5e-64
Q9EPH0		744	Prestin OS=Rattus norvegi	no	N/A	0.315	0.477	0.369	5e-64
Q99NH7		744	Prestin OS=Mus musculus G	no	N/A	0.315	0.477	0.369	5e-64
Q9BXS9		759	Solute carrier family 26	no	N/A	0.311	0.461	0.343	1e-57

>sp\|Q922U1\|PRPF3_MOUSE U4/U6 small nuclear ribonucleoprotein Prp3 OS=Mus musculus GN=Prpf3 PE=1 SV=1	Back alignment and function desciption

 Score =  410 bits (1054), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/423 (55%), Positives = 294/423 (69%), Gaps = 32/423 (7%)

Query: 21  QIKNMMAHAQKMIEERKKALLALKGTAPVAPTPVVPAGVTPAIIGSAKIPPLMPPAPPST 80
           QIK MM  A + IEERKK L  +   +P AP P  P+   P  +      P+     PS 
Sbjct: 141 QIKQMMEAATRQIEERKKQLSFI---SPPAPQPKTPSSSQPERL------PIGNTIQPSQ 191

Query: 81  TAEKDNATYEKAMKIAQLQAQIQSKLS-----------TGVLKPSVPGAKPPGAPATD-- 127
            A   N   EKA K A+LQA+IQ++L+            G+      G  PP     D  
Sbjct: 192 AATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGIAPPKVELKDQT 251

Query: 128 KPTPLILDSEGRTIDITGKQVQLTHVVPTLKANIRAKKREEFHEKLKEKPTEDLSESKFF 187
           KPTPLILD +GRT+D TGK+V+LTH +PTLKANIRA KRE+F ++LKEKP+ED+  + FF
Sbjct: 252 KPTPLILDEQGRTVDATGKEVELTHRMPTLKANIRAVKREQFKQQLKEKPSEDMESNTFF 311

Query: 188 DPRISAKSSVRTKRALKFHEPGKFQQLAEQLRVKAQLAKLQADISKNARKTGISSATKLA 247
           DPR+S   S R +R  KFH+ GKF+++A++LR KAQL KLQA+IS+ ARKTGI ++T+LA
Sbjct: 312 DPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAARKTGIHTSTRLA 371

Query: 248 LIAPKMEDDQDEMPEVEWWDAVI------MVEETYEKENNIKTSAITNLVEHPIQMKPPS 301
           LIAPK E  + ++PE+EWWD+ I      + EE  ++E+      ITNLVEHP Q+ PP 
Sbjct: 372 LIAPKKELKEGDIPEIEWWDSYIIPNGFDLTEENPKREDYF---GITNLVEHPAQLNPPV 428

Query: 302 DMAKPVYMPVFLTDKERKKLRRQNRREAWKEEQEKIRLGLEPPPEPKLRISNLMRVLGTE 361
           D   PV + V+LT KE+KKLRRQ RREA KE QEK+RLGL PPPEPK+RISNLMRVLGTE
Sbjct: 429 DNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLTPPPEPKVRISNLMRVLGTE 488

Query: 362 AVQDPTKMEAHVRAQMAKRQKDHEEANASRKLTVEQKREKKIRKIKEDTSLEVHVAL-RI 420
           AVQDPTK+EAHVRAQMAKRQK HEEANA+RKLT EQ++ KKI+K+KED S  VH+++ R+
Sbjct: 489 AVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDISQGVHISVYRV 548

Query: 421 SNL 423
            NL
Sbjct: 549 RNL 551

Participates in pre-mRNA splicing. May play a role in the assembly of the U4/U5/U6 tri-snRNP complex.
Mus musculus (taxid: 10090)

>sp\|Q5R5F1\|PRPF3_PONAB U4/U6 small nuclear ribonucleoprotein Prp3 OS=Pongo abelii GN=PRPF3 PE=2 SV=1	Back alignment and function description

>sp\|O43395\|PRPF3_HUMAN U4/U6 small nuclear ribonucleoprotein Prp3 OS=Homo sapiens GN=PRPF3 PE=1 SV=2	Back alignment and function description

>sp\|Q2KIA6\|PRPF3_BOVIN U4/U6 small nuclear ribonucleoprotein Prp3 OS=Bos taurus GN=PRPF3 PE=2 SV=1	Back alignment and function description

>sp\|Q5ZJ85\|PRPF3_CHICK U4/U6 small nuclear ribonucleoprotein Prp3 OS=Gallus gallus GN=PRPF3 PE=2 SV=1	Back alignment and function description

>sp\|P58743\|S26A5_HUMAN Prestin OS=Homo sapiens GN=SLC26A5 PE=2 SV=1	Back alignment and function description

>sp\|Q9JKQ2\|S26A5_MERUN Prestin OS=Meriones unguiculatus GN=SLC26A5 PE=1 SV=1	Back alignment and function description

>sp\|Q9EPH0\|S26A5_RAT Prestin OS=Rattus norvegicus GN=Slc26a5 PE=1 SV=1	Back alignment and function description

>sp\|Q99NH7\|S26A5_MOUSE Prestin OS=Mus musculus GN=Slc26a5 PE=2 SV=3	Back alignment and function description

>sp\|Q9BXS9\|S26A6_HUMAN Solute carrier family 26 member 6 OS=Homo sapiens GN=SLC26A6 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1124
383854422		1319	PREDICTED: uncharacterized protein LOC10	0.407	0.347	0.558	1e-157
307181925		633	U4/U6 small nuclear ribonucleoprotein Pr	0.406	0.721	0.558	1e-157
340709509		1318	PREDICTED: hypothetical protein LOC10064	0.406	0.346	0.565	1e-156
333944010		633	U4/U6 small nuclear ribonucleoprotein Pr	0.406	0.721	0.562	1e-156
350420491		1318	PREDICTED: hypothetical protein LOC10074	0.405	0.345	0.568	1e-156
307211660		1322	U4/U6 small nuclear ribonucleoprotein Pr	0.420	0.357	0.540	1e-155
332029021		509	U4/U6 small nuclear ribonucleoprotein Pr	0.401	0.886	0.549	1e-151
156555632		639	PREDICTED: U4/U6 small nuclear ribonucle	0.419	0.737	0.522	1e-149
193692998		623	PREDICTED: u4/U6 small nuclear ribonucle	0.333	0.601	0.628	1e-134
157130304		662	Trisn small nuclear ribonucleoprotein, p	0.352	0.598	0.579	1e-124

>gi\|383854422\|ref\|XP_003702720.1\| PREDICTED: uncharacterized protein LOC100882585 [Megachile rotundata]	Back alignment and taxonomy information

 Score =  563 bits (1450), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 310/555 (55%), Positives = 374/555 (67%), Gaps = 97/555 (17%)

Query: 20  NQIKNMMAHAQKMIEERKKALLALKGTAPVAPTPVVPAGVTPAIIGSAKIPPLMPPAPPS 79
           ++I+ MMA+AQ+ IEERK+AL A+K        P++ A  +   +GS     L+      
Sbjct: 119 DKIRQMMANAQREIEERKRALKAIKQEESAPVKPLLKARDSLPTVGSMYNQGLL------ 172

Query: 80  TTAEKDNATYEKAMKIAQLQAQIQSKLSTGVLKP-SVPGAKPPGAPATDKPTPLILDSEG 138
                     +KA KIA LQAQI+SKLS+G+L   +VP          DKPTPLILD  G
Sbjct: 173 -----SKTDSDKARKIAALQAQIRSKLSSGLLGNVNVP----------DKPTPLILDESG 217

Query: 139 RTIDITGKQVQLTHVVPTLKANIRAKKREEFHEKLKE-KPTEDLSESKFFDPRISAKSSV 197
           RT+DITGK+VQLT VVPTLKANIRAKKREEF  +L+E K  E++ ++ FFD RI  K ++
Sbjct: 218 RTVDITGKEVQLTQVVPTLKANIRAKKREEFKAQLQESKGPEEIQDTHFFDTRIGVKPAI 277

Query: 198 RTKRALKFHEPGKFQQLAEQLRVKAQLAKLQADISKNARKTGISSATKLALIAPKMEDDQ 257
           R KR LKFHEPGKFQQLAE++R+KAQL KLQ +IS+ ARKTGISSATKLALIAPK E   
Sbjct: 278 RGKRTLKFHEPGKFQQLAERIRMKAQLEKLQNEISQIARKTGISSATKLALIAPKTEALS 337

Query: 258 DEMPEVEWWDAVIMVEETYEKEN---NIKTSAITNLVEHPIQMKPPSDMAKPVYMPVFLT 314
           +++P VEWWD+VI+    Y  E+    IK S ITNLVEHP QM+PP+D  KP+YMPVFLT
Sbjct: 338 EDVPNVEWWDSVILTG-GYPNEDEPTTIKNSTITNLVEHPTQMRPPTDPLKPIYMPVFLT 396

Query: 315 DKERKKLRRQNRREAWKEEQEKIRLGLEPPPEPKLRISNLMRVLGTEAVQDPTKMEAHVR 374
            KERKKLRRQNRREAWKEEQEKIRLGLEPPPEPKLRISNLMRVLGTEAVQDPTK+EAHVR
Sbjct: 397 KKERKKLRRQNRREAWKEEQEKIRLGLEPPPEPKLRISNLMRVLGTEAVQDPTKIEAHVR 456

Query: 375 AQMAKRQKDHEEANASRKLTVEQKREKKIRKIKEDTSLEVHVAL-RISNLMRVLGTEAVQ 433
            QMAKR K HE+ANA+R+LT +Q+REKK RK+KEDT+L VHVA+ RI +L+         
Sbjct: 457 QQMAKRLKAHEDANAARRLTADQRREKKARKLKEDTTLGVHVAVYRIRDLVN-------- 508

Query: 434 DPTKMEAHVRAQMAKRQKDHEEANASRKLTVEQKREKKIRKIKEDTSLEVHVAVYRVDDF 493
                                  NAS+K  VE                            
Sbjct: 509 -----------------------NASKKFKVE---------------------------- 517

Query: 494 SNPSKKFKVETNCNQLFMTGAVVMYKDCNVIVVEGGPKQQSKFKRLMMHRIKWEEDMIKS 553
                     TN  QL++TG V++++DCNV+VVEGG KQ SK+KRLMMHRIKWEED+IK 
Sbjct: 518 ----------TNAKQLYLTGCVMLFRDCNVVVVEGGAKQLSKYKRLMMHRIKWEEDIIKD 567

Query: 554 NEGKETPNKCVLVWE 568
           N+G + PNKCVLVWE
Sbjct: 568 NDGNDVPNKCVLVWE 582

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|307181925\|gb\|EFN69365.1\| U4/U6 small nuclear ribonucleoprotein Prp3 [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|340709509\|ref\|XP_003393348.1\| PREDICTED: hypothetical protein LOC100643921 [Bombus terrestris]	Back alignment and taxonomy information

>gi\|333944010\|ref\|NP_001207415.1\| U4/U6 small nuclear ribonucleoprotein Prp3 [Apis mellifera]	Back alignment and taxonomy information

>gi\|350420491\|ref\|XP_003492526.1\| PREDICTED: hypothetical protein LOC100748229 [Bombus impatiens]	Back alignment and taxonomy information

>gi\|307211660\|gb\|EFN87681.1\| U4/U6 small nuclear ribonucleoprotein Prp3 [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|332029021\|gb\|EGI69035.1\| U4/U6 small nuclear ribonucleoprotein Prp3 [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|156555632\|ref\|XP_001603310.1\| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3-like [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|193692998\|ref\|XP_001950132.1\| PREDICTED: u4/U6 small nuclear ribonucleoprotein Prp3-like [Acyrthosiphon pisum]	Back alignment and taxonomy information

>gi\|157130304\|ref\|XP_001661880.1\| Trisn small nuclear ribonucleoprotein, putative [Aedes aegypti] gi\|108871940\|gb\|EAT36165.1\| AAEL011745-PA [Aedes aegypti]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1124
FB\|FBgn0036915		598	Prp3 "Precursor RNA processing	0.350	0.658	0.556	4.6e-105
MGI\|MGI:1918017		683	Prpf3 "PRP3 pre-mRNA processin	0.350	0.576	0.526	6.4e-99
RGD\|1310555		683	Prpf3 "PRP3 pre-mRNA processin	0.350	0.576	0.526	6.4e-99
UNIPROTKB\|H9KYU5		683	RPRD2 "Uncharacterized protein	0.348	0.573	0.523	8.2e-99
UNIPROTKB\|F2Z4C4		683	PRPF3 "U4/U6 small nuclear rib	0.350	0.576	0.523	1e-98
UNIPROTKB\|E2R4I0		683	PRPF3 "Uncharacterized protein	0.350	0.576	0.523	1e-98
UNIPROTKB\|O43395		683	PRPF3 "U4/U6 small nuclear rib	0.350	0.576	0.523	1e-98
UNIPROTKB\|I3LJQ7		683	PRPF3 "Uncharacterized protein	0.350	0.576	0.523	1e-98
UNIPROTKB\|J9P3I5		669	PRPF3 "Uncharacterized protein	0.350	0.588	0.523	1e-98
UNIPROTKB\|Q2KIA6		683	PRPF3 "U4/U6 small nuclear rib	0.350	0.576	0.523	1.3e-98

FB\|FBgn0036915 Prp3 "Precursor RNA processing 3" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 1040 (371.2 bits), Expect = 4.6e-105, P = 4.6e-105
 Identities = 236/424 (55%), Positives = 291/424 (68%)

Query:    16 SFPQNQIKNMMAHAQKMIEERKKALLALKXXXXXXXXXXXXXXXXXXIIGSAKIXXXXXX 75
             S    QIK MMAHAQ+ IEERK+AL  L+                   IG   +      
Sbjct:    62 SLSSTQIKLMMAHAQREIEERKRALSNLRDKDPLLASVPS--------IGMP-VALATQA 112

Query:    76 XXXSTTAEKDNATYEKAMKIAQLQAQIQSKLS---TGVLKPS-VPGAKPPGAPATDKPTP 131
                  T E D+   EKA KIA+LQAQI++KL+     +++P+ V  A    A A ++P P
Sbjct:   113 LAKKPTPE-DS---EKARKIAELQAQIRAKLTGNLASLIQPTAVAAAAAAAAQAQERPKP 168

Query:   132 LILDSEGRTIDITGKQVQLTHVVPTLKANIRAKKREEFHEKL-----KEKPTEDLSES-K 185
             LILD EGRT+D +G+ + +  V PTLKANIRAKKRE F  +       E  T    E+ K
Sbjct:   169 LILDDEGRTVDKSGRTINIPTVTPTLKANIRAKKREVFQRQTGLGERSESGTSAQEEAIK 228

Query:   186 FFDPRISAKSSVRTKRALKFHEPGKFQQLAEQLRVKAQLAKLQADISKNARKTGISSATK 245
             +FD RI+ K +VRTKR L+FHEPGKFQQLAE++R+K+QL +LQ +IS+ ARKTGISSATK
Sbjct:   229 YFDDRIALKPTVRTKRTLRFHEPGKFQQLAERMRMKSQLERLQNEISQIARKTGISSATK 288

Query:   246 LALIAPKMEDDQDEMPEVEWWDAVIMVE--ETYEKEN---NIKTSAITNLVEHPIQMKPP 300
             LALIAPK +D  D++P +EWWD+VI+ +  ET +  +   +I+ +AITNL+EHP QMKPP
Sbjct:   289 LALIAPK-QDMPDDVPAMEWWDSVILTQDLETVDDASGKISIRQTAITNLIEHPTQMKPP 347

Query:   301 SDMAKPVYMPVFLTDKERKKLRRQNRREAWKEEQEKIRLGLEPPPEPKLRISNLMRVLGT 360
             ++  KPVY+PVFLT KERKKLRRQNRREAWKEEQEKIRLGL  PPEPKLRISNLMRVLG+
Sbjct:   348 NEPLKPVYLPVFLTKKERKKLRRQNRREAWKEEQEKIRLGLVAPPEPKLRISNLMRVLGS 407

Query:   361 EAVQDPTKMEAHVRAQMAKRQKDHEEANASRKLTVEQXXXXXXXXXXXDTSLEVHVAL-R 419
             EAVQDPTKME HVR QMAKRQK HE+AN +RKLT EQ           DTS  VHV++ R
Sbjct:   408 EAVQDPTKMEQHVRDQMAKRQKAHEDANNARKLTSEQKSEKKQRKLREDTSCGVHVSVYR 467

Query:   420 ISNL 423
             I +L
Sbjct:   468 IRDL 471

GO:0005688 "U6 snRNP" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS

GO:0005687 "U4 snRNP" evidence=ISS

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IEA

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0031935 "regulation of chromatin silencing" evidence=IMP

MGI\|MGI:1918017 Prpf3 "PRP3 pre-mRNA processing factor 3 homolog (yeast)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1310555 Prpf3 "PRP3 pre-mRNA processing factor 3 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|H9KYU5 RPRD2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F2Z4C4 PRPF3 "U4/U6 small nuclear ribonucleoprotein Prp3" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R4I0 PRPF3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|O43395 PRPF3 "U4/U6 small nuclear ribonucleoprotein Prp3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LJQ7 PRPF3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P3I5 PRPF3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q2KIA6 PRPF3 "U4/U6 small nuclear ribonucleoprotein Prp3" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q922U1	PRPF3_MOUSE	No assigned EC number	0.5508	0.3478	0.5724	yes	N/A
Q5ZJ85	PRPF3_CHICK	No assigned EC number	0.5413	0.3487	0.5730	yes	N/A
O43395	PRPF3_HUMAN	No assigned EC number	0.5460	0.3478	0.5724	yes	N/A
Q2KIA6	PRPF3_BOVIN	No assigned EC number	0.5460	0.3478	0.5724	yes	N/A
Q5R5F1	PRPF3_PONAB	No assigned EC number	0.5460	0.3478	0.5724	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		1124
pfam08572		222	pfam08572, PRP3, pre-mRNA processing factor 3 (PRP	8e-81
TIGR00815		563	TIGR00815, sulP, high affinity sulphate transporte	1e-74
pfam00916		279	pfam00916, Sulfate_transp, Sulfate transporter fam	4e-62
COG0659		554	COG0659, SUL1, Sulfate permease and related transp	1e-61
pfam13792		83	pfam13792, Sulfate_tra_GLY, Sulfate transporter N-	1e-32
pfam06544		127	pfam06544, DUF1115, Protein of unknown function (D	6e-26
TIGR00815		563	TIGR00815, sulP, high affinity sulphate transporte	1e-19
PRK11660		568	PRK11660, PRK11660, putative transporter; Provisio	1e-14
cd07042		107	cd07042, STAS_SulP_like_sulfate_transporter, Sulph	3e-14
COG0659		554	COG0659, SUL1, Sulfate permease and related transp	3e-13
pfam01740		106	pfam01740, STAS, STAS domain	1e-09
pfam00860		389	pfam00860, Xan_ur_permease, Permease family	7e-08
TIGR00377		108	TIGR00377, ant_ant_sig, anti-anti-sigma factor	5e-04
COG3170		755	COG3170, FimV, Tfp pilus assembly protein FimV [Ce	0.001
TIGR03173		406	TIGR03173, pbuX, xanthine permease	0.001
COG1366		117	COG1366, SpoIIAA, Anti-anti-sigma regulatory facto	0.001
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
cd07043		99	cd07043, STAS_anti-anti-sigma_factors, Sulphate Tr	0.004

>gnl\|CDD\|219911 pfam08572, PRP3, pre-mRNA processing factor 3 (PRP3)	Back alignment and domain information

 Score =  263 bits (673), Expect = 8e-81
 Identities = 110/222 (49%), Positives = 159/222 (71%), Gaps = 11/222 (4%)

Query: 183 ESKFFDPRIS-AKSSVRTKRALKFHEPGKFQQLAEQLRVKAQLAKLQADISKNARKTGIS 241
           E+ + DPR++ AK   R +R L+F E GKF Q AE+LR +A+L + +A IS+ A+  G+ 
Sbjct: 1   ENPYLDPRMAEAKRKKRRRRGLQFIEKGKFSQQAEELRREAKLEEEEARISEEAQNAGLK 60

Query: 242 SATKLALIAPKMEDDQDEMPEVEWWDAVIM-------VEETYEKENNIKTSAITNLVEHP 294
           SAT LA   PK E   D++P++EWWD  I+       +E+  +++ + + S+ITN +EHP
Sbjct: 61  SATDLAEKIPKKEL-PDDVPDIEWWDMPILDDPDYNDLEDESDEDIDEEMSSITNYIEHP 119

Query: 295 IQMKPPSDMAKPVYM--PVFLTDKERKKLRRQNRREAWKEEQEKIRLGLEPPPEPKLRIS 352
           + ++PP +   P  +  P++LT KE+KKLRRQ R+E  KE+QE+IRLGLEPPP PK+++S
Sbjct: 120 VPIEPPWEAHYPPPIRPPLYLTKKEQKKLRRQRRKEKRKEKQERIRLGLEPPPPPKVKLS 179

Query: 353 NLMRVLGTEAVQDPTKMEAHVRAQMAKRQKDHEEANASRKLT 394
           NLMRVLG+EAVQDPTK+EA VR Q+A+R++ HE+ N  RKLT
Sbjct: 180 NLMRVLGSEAVQDPTKVEAEVRRQVAERRQAHEDRNEERKLT 221

Pre-mRNA processing factor 3 (PRP3) is a U4/U6-associated splicing factor. The human PRP3 has been implicated in autosomal retinitis pigmentosa. Length = 222

>gnl\|CDD\|162054 TIGR00815, sulP, high affinity sulphate transporter 1	Back alignment and domain information

>gnl\|CDD\|216188 pfam00916, Sulfate_transp, Sulfate transporter family	Back alignment and domain information

>gnl\|CDD\|223732 COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|205965 pfam13792, Sulfate_tra_GLY, Sulfate transporter N-terminal domain with GLY motif	Back alignment and domain information

>gnl\|CDD\|219080 pfam06544, DUF1115, Protein of unknown function (DUF1115)	Back alignment and domain information

>gnl\|CDD\|162054 TIGR00815, sulP, high affinity sulphate transporter 1	Back alignment and domain information

>gnl\|CDD\|183265 PRK11660, PRK11660, putative transporter; Provisional	Back alignment and domain information

>gnl\|CDD\|132913 cd07042, STAS_SulP_like_sulfate_transporter, Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function	Back alignment and domain information

>gnl\|CDD\|223732 COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|201948 pfam01740, STAS, STAS domain	Back alignment and domain information

>gnl\|CDD\|216158 pfam00860, Xan_ur_permease, Permease family	Back alignment and domain information

>gnl\|CDD\|129473 TIGR00377, ant_ant_sig, anti-anti-sigma factor	Back alignment and domain information

>gnl\|CDD\|225711 COG3170, FimV, Tfp pilus assembly protein FimV [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>gnl\|CDD\|234136 TIGR03173, pbuX, xanthine permease	Back alignment and domain information

>gnl\|CDD\|224285 COG1366, SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|132914 cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1124
KOG2769\|consensus		522		100.0
TIGR00815		563	sulP high affinity sulphate transporter 1. (2) SO4	100.0
PF08572		223	PRP3: pre-mRNA processing factor 3 (PRP3); InterPr	100.0
KOG0236\|consensus		665		100.0
COG0659		554	SUL1 Sulfate permease and related transporters (MF	100.0
PRK11660		568	putative transporter; Provisional	100.0
PF00916		280	Sulfate_transp: Sulfate transporter family; InterP	100.0
COG2252		436	Xanthine/uracil/vitamin C permease [Nucleotide tra	99.97
KOG2769\|consensus		522		99.92
PF13792		84	Sulfate_tra_GLY: Sulfate transporter N-terminal do	99.9
KOG0236\|consensus		665		99.85
TIGR00801		415	ncs2 uracil-xanthine permease. NCS2 family appears	99.79
TIGR03173		406	pbuX xanthine permease. All the seed members of th	99.78
PRK10720		428	uracil transporter; Provisional	99.75
PF06544		128	DUF1115: Protein of unknown function (DUF1115); In	99.71
PRK11660		568	putative transporter; Provisional	99.65
TIGR00815		563	sulP high affinity sulphate transporter 1. (2) SO4	99.65
COG2233		451	UraA Xanthine/uracil permeases [Nucleotide transpo	99.58
COG0659		554	SUL1 Sulfate permease and related transporters (MF	99.53
PF00860		389	Xan_ur_permease: Permease family; InterPro: IPR006	99.51
TIGR03616		429	RutG pyrimidine utilization transport protein G. T	99.49
PRK11412		433	putative uracil/xanthine transporter; Provisional	99.46
PF01740		117	STAS: STAS domain; InterPro: IPR002645 The STAS (S	99.26
cd06844		100	STAS Sulphate Transporter and Anti-Sigma factor an	99.22
TIGR02886		106	spore_II_AA anti-sigma F factor antagonist. The an	99.21
cd07041		109	STAS_RsbR_RsbS_like Sulphate Transporter and Anti-	99.16
PF08572		223	PRP3: pre-mRNA processing factor 3 (PRP3); InterPr	99.02
cd07042		107	STAS_SulP_like_sulfate_transporter Sulphate Transp	98.93
TIGR00377		108	ant_ant_sig anti-anti-sigma factor. This superfami	98.9
cd07043		99	STAS_anti-anti-sigma_factors Sulphate Transporter	98.81
TIGR00843		395	benE benzoate transporter. The benzoate transporte	98.66
COG1366		117	SpoIIAA Anti-anti-sigma regulatory factor (antagon	98.51
PF13466		80	STAS_2: STAS domain	98.38
TIGR00834		900	ae anion exchange protein. They preferentially cat	98.32
KOG1172\|consensus		876		98.22
PF03594		378	BenE: Benzoate membrane transport protein; InterPr	98.2
KOG1292\|consensus		510		97.8
COG3135		402	BenE Uncharacterized protein involved in benzoate	97.43
PF00955		510	HCO3_cotransp: HCO3- transporter family Only parti	96.92
COG3113		99	Predicted NTP binding protein (contains STAS domai	96.29
PF11840		492	DUF3360: Protein of unknown function (DUF3360); In	96.21
PRK10720		428	uracil transporter; Provisional	86.17
TIGR00801		415	ncs2 uracil-xanthine permease. NCS2 family appears	81.12

>KOG2769\|consensus	Back alignment and domain information

Probab=100.00  E-value=2e-89  Score=766.02  Aligned_cols=345  Identities=56%  Similarity=0.858  Sum_probs=310.4

Q ss_pred             CccccCCCCCCCCCCCCcccCCCCCccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhhhcCCCCCCCC
Q psy16876        178 TEDLSESKFFDPRISAKSSVRTKRALKFHEPGKFQQLAEQLRVKAQLAKLQADISKNARKTGISSATKLALIAPKMEDDQ  257 (1124)
Q Consensus       178 ~~~~~~~~~~d~~~~~~~~~r~~~~~~f~~~g~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (1124)
                      .......+||||| ..++..|.+|+|+|||+|||++.|+++|.++++|+||+||++.++|+||++++++++|+|+     
T Consensus       157 ~~~~~li~n~d~~-~~~~~~r~rr~f~f~e~gkf~~~an~~r~~a~le~Lq~eis~~a~k~gI~~~~~la~~~p~-----  230 (522)
T KOG2769|consen  157 SNLSGLIPNLDPR-TKKPRKRGRRTFLFHESGKFIKLANRHRYKAQLERLQNEISQAARKTGISTATKLALIAPK-----  230 (522)
T ss_pred             ccccccccccChh-hccchhccccceeecccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhccCC-----
Confidence            3444557889998 5667788999999999999999999999999999999999999999999999999999997     


Q ss_pred             CCCCcccccCccccccccccccc--ccccccccccccCCCCCCCCCCCCCCCccCCcCCHHHHHHHHHHHHHHHHHHHHH
Q psy16876        258 DEMPEVEWWDAVIMVEETYEKEN--NIKTSAITNLVEHPIQMKPPSDMAKPVYMPVFLTDKERKKLRRQNRREAWKEEQE  335 (1124)
Q Consensus       258 ~~~p~~ewwd~~~~~~~~~~~~~--~~~~~~i~~~v~hp~~~~~~~~~~~~~~~~~~~tkk~rk~~rr~~~~~~~~~k~~  335 (1124)
                      +++|+|||||..||+++.|.++.  .|....|++|||||+|+.||.++..|+|+++|||||||||||||+|+|+++|||+
T Consensus       231 ~~iP~iEwwD~~il~~~d~~dEn~~~i~~~~it~~IeHP~~~~PP~e~~~p~~l~vyLTKKErKKLRRQ~R~ea~KEkqe  310 (522)
T KOG2769|consen  231 DDIPAIEWWDSNILTNDDTIDENHLKIDQSIITNLIEHPIPMLPPAENLTPVSLPVYLTKKERKKLRRQRRKEARKEKQE  310 (522)
T ss_pred             CCCchhhhhcccccccCCcccccchhhhHHHHHHHhcCCcccCCCcccCCCCccceeecHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999886554333  4556889999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCCccccccccccccccccccCCchhhHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHHHhhcccccccee
Q psy16876        336 KIRLGLEPPPEPKLRISNLMRVLGTEAVQDPTKMEAHVRAQMAKRQKDHEEANASRKLTVEQKREKKIRKIKEDTSLEVH  415 (1124)
Q Consensus       336 ~~~~~~~~p~~~k~~~~n~~~v~~~~a~~dpt~~e~~v~~q~~~r~~~h~~~n~~r~~~~~~~~~~~~~~~~~~~~~~~~  415 (1124)
                      +|||||+|||+||||+||||+|||++|++||||||++||+||++|+++||++                            
T Consensus       311 kIrLGL~~ppePKVKiSNLMrVLgsEAiqDPTK~E~~VR~Q~aeR~kaHe~~----------------------------  362 (522)
T KOG2769|consen  311 KIRLGLEPPPEPKVKLSNLMRVLGSEAIQDPTKLEAEVRDQMAERQKAHEDE----------------------------  362 (522)
T ss_pred             HHHhcCCCCCCCcchHHHHHHHhhhccccCcHHHHHHHHHHHHHHHHHhhhh----------------------------
Confidence            9999999999999999999999999999999999999999999998776654                            


Q ss_pred             eeeeechhhhhhcccccCCchhhHHHHHHHHHHhHHhhHHhhhhhccchHHHHHHHHhhhcccccccEEEEEEEEeccCC
Q psy16876        416 VALRISNLMRVLGTEAVQDPTKMEAHVRAQMAKRQKDHEEANASRKLTVEQKREKKIRKIKEDTSLEVHVAVYRVDDFSN  495 (1124)
Q Consensus       416 ~~~~~~~l~~~l~~~a~~~~~~~~~~v~~~~~~R~~~~e~~n~~RkLt~eqr~ek~~~kl~~D~~aGi~vav~~I~~L~n  495 (1124)
                                                               |++||||++||++|+.+++.+|.+.|++|.||+|.+|.|
T Consensus       363 -----------------------------------------N~aRKLT~~qkreKk~rKl~ED~st~v~~~V~r~K~l~~  401 (522)
T KOG2769|consen  363 -----------------------------------------NAARKLTPEQKREKKERKLFEDPSTGVHCSVYRIKNLQN  401 (522)
T ss_pred             -----------------------------------------hhhhcCCHHHHHHHHHhhhccCCCceEEEEEEEEecccC
Confidence                                                     555556666666666666777888999999999999999


Q ss_pred             CCcccccccCccchheeEEEEEecCcceEEEcCCcchhhhhhhhhhcccccccccc-cc---cCCCcccCchheeeecch
Q psy16876        496 PSKKFKVETNCNQLFMTGAVVMYKDCNVIVVEGGPKQQSKFKRLMMHRIKWEEDMI-KS---NEGKETPNKCVLVWELGS  571 (1124)
Q Consensus       496 ps~~fkv~~nA~q~~LtG~~v~~~~~~~VvVeGG~kAi~aY~~LM~~rI~W~e~~~-~~---~~~~~~~n~c~lVweGgv  571 (1124)
                      |+++|||++||+|+.||||||++.++++||||||+||+++|++||+.||+|+|++. +.   .+....+|+|.+||+|.+
T Consensus       402 p~~rFKve~NAkql~ltG~~vl~~d~~vvVvEGg~Ka~KkykrLMl~RIkW~e~~~~k~d~~~e~~~~~N~C~lvWEG~~  481 (522)
T KOG2769|consen  402 PKKRFKVEMNAKQLQLTGVCVLHRDMNVVVVEGGPKAQKKYKRLMLKRIKWEEDFELKKDEDEEAVNGGNKCVLVWEGTV  481 (522)
T ss_pred             CccceeeeechhhhceeeeEEEecCCcEEEEecCHHHHHHHHHHHHhhcCchhhhhhcccchhhccCCCceEEEEeeccc
Confidence            99999999999999999999999999999999999999999999999999999853 22   223345799999999999


Q ss_pred             hhhhhhhccccccccchhhHHHhhhc
Q psy16876        572 LSVLMSDIMISGFTTGTAILVILSQI  597 (1124)
Q Consensus       572 ~~r~F~~~vi~g~~t~aai~i~lsQL  597 (1124)
                      ..+.|..|.++.|+++..+..++.+.
T Consensus       482 ~rr~F~~~~~k~c~~e~~Ar~~f~k~  507 (522)
T KOG2769|consen  482 QRRSFREFKFKECPTEKMAREFFEKH  507 (522)
T ss_pred             cCCcccceeEEecCcHHHHHHHHHHc
Confidence            99999999999999999987775543

>TIGR00815 sulP high affinity sulphate transporter 1	Back alignment and domain information

>PF08572 PRP3: pre-mRNA processing factor 3 (PRP3); InterPro: IPR013881 Pre-mRNA processing factor 3 (PRP3) is a U4/U6-associated splicing factor	Back alignment and domain information

>KOG0236\|consensus	Back alignment and domain information

>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK11660 putative transporter; Provisional	Back alignment and domain information

>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related	Back alignment and domain information

>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]	Back alignment and domain information

>KOG2769\|consensus	Back alignment and domain information

>PF13792 Sulfate_tra_GLY: Sulfate transporter N-terminal domain with GLY motif	Back alignment and domain information

>KOG0236\|consensus	Back alignment and domain information

>TIGR00801 ncs2 uracil-xanthine permease	Back alignment and domain information

>TIGR03173 pbuX xanthine permease	Back alignment and domain information

>PRK10720 uracil transporter; Provisional	Back alignment and domain information

>PF06544 DUF1115: Protein of unknown function (DUF1115); InterPro: IPR010541 This entry represents the C terminus of several eukaryotic RWD domain-containing proteins of unknown function	Back alignment and domain information

>PRK11660 putative transporter; Provisional	Back alignment and domain information

>TIGR00815 sulP high affinity sulphate transporter 1	Back alignment and domain information

>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]	Back alignment and domain information

>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []	Back alignment and domain information

>TIGR03616 RutG pyrimidine utilization transport protein G	Back alignment and domain information

>PRK11412 putative uracil/xanthine transporter; Provisional	Back alignment and domain information

>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists	Back alignment and domain information

>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors	Back alignment and domain information

>TIGR02886 spore_II_AA anti-sigma F factor antagonist	Back alignment and domain information

>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	Back alignment and domain information

>PF08572 PRP3: pre-mRNA processing factor 3 (PRP3); InterPro: IPR013881 Pre-mRNA processing factor 3 (PRP3) is a U4/U6-associated splicing factor	Back alignment and domain information

>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function	Back alignment and domain information

>TIGR00377 ant_ant_sig anti-anti-sigma factor	Back alignment and domain information

>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	Back alignment and domain information

>TIGR00843 benE benzoate transporter	Back alignment and domain information

>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]	Back alignment and domain information

>PF13466 STAS_2: STAS domain	Back alignment and domain information

>TIGR00834 ae anion exchange protein	Back alignment and domain information

>KOG1172\|consensus	Back alignment and domain information

>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]	Back alignment and domain information

>KOG1292\|consensus	Back alignment and domain information

>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells	Back alignment and domain information

>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]	Back alignment and domain information

>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised	Back alignment and domain information

>PRK10720 uracil transporter; Provisional	Back alignment and domain information

>TIGR00801 ncs2 uracil-xanthine permease	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1124
3llo_A		143	Crystal Structure Of The Stas Domain Of Motor Prote		4e-04

>pdb|3LLO|A Chain A, Crystal Structure Of The Stas Domain Of Motor Protein Prestin (Anion Transporter Slc26a5) Length = 143

Back alignment and structure

Iteration: 1

Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Query: 882 LGRLIDSNIYVEEDFYESAIDVPGIVILRIIGGMNFINKDKVFHKIS-KLSLSSEPYPKQ 940 LG+L D+++Y++ D YE ++PGI I +I + + N D + K ++ Sbjct: 7 LGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYSSALKRKTGVNGSENIHT 66 Query: 941 IILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHI 975 +ILD ++ +D+ VK+ + KE + GI +++ Sbjct: 67 VILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYL 101

PyMOL of 3llo

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1124
3llo_A		143	Prestin; STAS domain, cell shape, glycoprotein, me	5e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-14
2kln_A		130	Probable sulphate-transport transmembrane protein;	8e-14
4dgh_A		130	Sulfate permease family protein; STAS domain, anio	7e-12
4dgf_A		135	Sulfate transporter sulfate transporter family PR;	1e-10
3ny7_A		118	YCHM protein, sulfate transporter; fatty acid bios	6e-08

>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus} Length = 143	Back alignment and structure

 Score = 72.1 bits (177), Expect = 5e-15
 Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 1/105 (0%)

Query: 882 LGRLIDSNIYVEEDFYESAIDVPGIVILRIIGGMNFINKDKVFHKISKL-SLSSEPYPKQ 940
           LG+L D+++Y++ D YE   ++PGI I +I   + + N D     + +   ++       
Sbjct: 7   LGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYSSALKRKTGVNGSENIHT 66

Query: 941 IILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHIVKLLEPVKQV 985
           +ILD   ++ +D+  VK+   + KE  + GI +++      V   
Sbjct: 67  VILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQVVND 111

PyMOL of 3llo

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 78.7 bits (193), Expect = 8e-15
 Identities = 96/608 (15%), Positives = 185/608 (30%), Gaps = 169/608 (27%)

Query: 531  KQQSKFKRLMMHRIKWEEDMIKSNEGKETPNKCVLVWELGSLSVLMSDIMISGFTTGTAI 590
            + Q ++K ++     +E+  + + + K+                   D+  S  +     
Sbjct: 13   EHQYQYKDILSV---FEDAFVDNFDCKDVQ-----------------DMPKSILSK---- 48

Query: 591  LVILSQIKHVFGIKVKRHIGPFNVIYTLIDVAENIHKTNYVAFGVVVILVSVLIIYNDHF 650
                 +I H+   K        +    L     +  +     F     +  VL I     
Sbjct: 49   ----EEIDHIIMSK-----DAVSGTLRLFWTLLSKQEEMVQKF-----VEEVLRINYKFL 94

Query: 651  KSKIQKNISFPIPTEMIVIVAGALLSSILDVKHKYNLS---NVGKIPIGLPSPQPPPF-- 705
             S I+     P     + I     L +   V  KYN+S      K+   L   +P     
Sbjct: 95   MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154

Query: 706  -------------------YLIPKLMLDGLF-ISIVAFSINISMASILAKKKYKIDSNQE 745
                               Y +   M   +F +++   +   ++  +L K  Y+ID N  
Sbjct: 155  IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 746  LLASGVSNI----------FASFFSCIPFASSLSRSLVQLQVGGKTQLAS-GVSCVLLVL 794
              +   SNI                  P+ + L   LV L V       +  +SC +L+ 
Sbjct: 215  SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL---LVLLNVQNAKAWNAFNLSCKILL- 270

Query: 795  ILLYIGPFFETLPYCVLTSIVIVAVKGMLNQVKDLKLAFKESYTEACVWCLTFLSVVLLD 854
                      T  +  +T  +  A    +  +    +       ++       L  +   
Sbjct: 271  ----------TTRFKQVTDFLSAATTTHI-SLDHHSMTLTPDEVKS-----LLLKYLDCR 314

Query: 855  VDYGL------GIGVLCSLIFVVVTG--------QKVMVYKLGRLIDSNIYVEE-----D 895
                L            S+I   +          + V   KL  +I+S++ V E      
Sbjct: 315  PQ-DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 896  FYES-AI-----DVPGIVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLS 949
             ++  ++      +P I++  I   +   +   V +K+ K SL  E  PK+  + + S+ 
Sbjct: 374  MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV-EKQPKESTISIPSI- 431

Query: 950  SVDTSTVKSFLDLYKELMEQGISLHIVKLLEPVKQVNSHPLLNQDDKDVGPKIFNKYKPF 1009
                     +L+L  +L  +  +LH   +++     N       D  D+ P   ++Y   
Sbjct: 432  ---------YLELKVKLENE-YALHR-SIVD---HYN--IPKTFDSDDLIPPYLDQY--- 472

Query: 1010 KQNEFDEIYHHTEYKKKHLSES------------------LKNKLRSKFKIVNIVLSLFP 1051
                    Y H  +   HL                     L+ K+R      N   S+  
Sbjct: 473  -------FYSHIGH---HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522

Query: 1052 ILEWLPNY 1059
             L+ L  Y
Sbjct: 523  TLQQLKFY 530

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 76.8 bits (188), Expect = 3e-14
 Identities = 93/603 (15%), Positives = 171/603 (28%), Gaps = 188/603 (31%)

Query: 306 PVYMPVFLTDKERKKLRRQNRREAWKEEQEKIRLGLEPPPEPKLRISNLMRVLGTEAVQ- 364
            V+   F+ + + K ++   +    KEE + I +  +      LR+   +     E VQ 
Sbjct: 23  SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI-IMSKDAVSGTLRLFWTLLSKQEEMVQK 81

Query: 365 --------------DPTKMEAHVRAQMAK-----RQKDHEEANASRKLTVEQKREKKIRK 405
                          P K E    + M +     R + + +     K  V   R +   K
Sbjct: 82  FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLK 139

Query: 406 IKED-TSLEVHVALRISNL----MR-----VLGTEAVQDP---TKMEAHV---------- 442
           +++    L         N+    +       +  +         KM+  +          
Sbjct: 140 LRQALLELRPA-----KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 443 -----------RAQMAKRQKDHEEANASRKLTVEQKREKKIRKIKE---DTSLEVHVAVY 488
                        Q+        + +++ KL +   + +  R +K    +  L V     
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV----- 249

Query: 489 RVDDFSNPS--KKFKVETNCNQLFMTGAVVMYKDCNVIVVEGGPKQQSKFKRLMMHRIKW 546
            + +  N      F +  +C  L  T      +   V               L  H +  
Sbjct: 250 -LLNVQNAKAWNAFNL--SCKILLTT------RFKQVTDFLSAATT--THISLDHHSMTL 298

Query: 547 EEDMIKSNEGKETPNKCVLVWELGSLSVLMSDIM---ISGFTTGTAI---LVILSQIKHV 600
             D     E K    K +       L   +       +S      +I   L      KHV
Sbjct: 299 TPD-----EVKSLLLKYLDC-RPQDLPREVLTTNPRRLSII--AESIRDGLATWDNWKHV 350

Query: 601 FGIKVKRHIGPFNVIYTLIDVAENIHKTNYVAFGV----VVILVSVLII------YND-- 648
              K+   I        +++ AE  ++  +    V      I   +L +       +D  
Sbjct: 351 NCDKLTTIIESS---LNVLEPAE--YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405

Query: 649 ------HFKSKIQKNISFPIPTEMIVIVAGALLSSILDVK---------HK-----YNLS 688
                 H  S ++K      P E  +    ++ S  L++K         H+     YN  
Sbjct: 406 VVVNKLHKYSLVEKQ-----PKESTI----SIPSIYLELKVKLENEYALHRSIVDHYN-- 454

Query: 689 NVGKIPIGLPSPQPPP------FY-----------------LIPKLMLDGLFI------S 719
               IP    S    P      FY                 L   + LD  F+       
Sbjct: 455 ----IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510

Query: 720 IVAFSINISMASILAK-KKYK--IDSNQELLASGVSNIFASFFSCIPFASSLSRS----L 772
             A++ + S+ + L + K YK  I  N       V+ I            +L  S    L
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI---EENLICSKYTDL 567

Query: 773 VQL 775
           +++
Sbjct: 568 LRI 570

PyMOL of 1vt4

>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis} Length = 130	Back alignment and structure

>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A* Length = 130	Back alignment and structure

>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A* Length = 135	Back alignment and structure

>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli} Length = 118	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1124
3qe7_A		429	Uracil permease; uracil transporter, URAA, transpo	99.79
3llo_A		143	Prestin; STAS domain, cell shape, glycoprotein, me	99.6
4dgh_A		130	Sulfate permease family protein; STAS domain, anio	99.45
4dgf_A		135	Sulfate transporter sulfate transporter family PR;	99.44
2kln_A		130	Probable sulphate-transport transmembrane protein;	99.42
3ny7_A		118	YCHM protein, sulfate transporter; fatty acid bios	99.29
3oiz_A		99	Antisigma-factor antagonist, STAS; PSI-2, midwest	99.21
2ka5_A		125	Putative anti-sigma factor antagonist TM_1081; ter	99.09
1sbo_A		110	Putative anti-sigma factor antagonist TM1442; open	99.03
3t6o_A		121	Sulfate transporter/antisigma-factor antagonist S;	98.98
4hyl_A		117	Stage II sporulation protein; structural genomics,	98.97
1th8_B		116	Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA,	98.92
1h4x_A		117	SPOIIAA, anti-sigma F factor antagonist; cell diff	98.9
3zxn_A		123	RSBS, anti-sigma-factor antagonist (STAS) domain p	98.57
3agd_A		456	Salt-tolerant glutaminase; glutaminase super famil	94.56
3qe7_A		429	Uracil permease; uracil transporter, URAA, transpo	91.27

>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}	Back alignment and structure

Probab=99.79  E-value=2.1e-18  Score=202.42  Aligned_cols=199  Identities=15%  Similarity=0.241  Sum_probs=152.0

Q ss_pred             cchhHHHHHHHHHHHHHHHhhccccccccccccccchhHHHHHHHhhhhhhcccccccccccccccC-CCCCCCCCCCcc
Q psy16876        628 TNYVAFGVVVILVSVLIIYNDHFKSKIQKNISFPIPTEMIVIVAGALLSSILDVKHKYNLSNVGKIP-IGLPSPQPPPFY  706 (1124)
Q Consensus       628 ~~~~~l~l~~~~lllllil~~~~~~~l~k~~~~~IP~~LI~Ii~gtlia~~lg~~~~~~v~~vg~ip-~glP~~~lP~f~  706 (1124)
                      .++..++++++++++++++.++.++.      ++.++.|+++++++++++.+|..+   +..+++.| .++|.+..|.|+
T Consensus       154 ~~~~~~~la~~tl~iii~~~~~~kg~------~~~~aiLigivvg~~~a~~~G~~d---~~~v~~a~~~~lP~~~~P~f~  224 (429)
T 3qe7_A          154 PDSKTIIISITTLAVTVLGSVLFRGF------LAIIPILIGVLVGYALSFAMGIVD---TTPIINAHWFALPTLYTPRFE  224 (429)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHSSSTT------TTTHHHHHHHHHHHHHHHHHHHTT---SSHHHHSCSSCCCCCCCCCCC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhccc------chhhHHHHHHHHHHHHHHHhcCCC---cccccccccccccCCCCCccc
Confidence            45677888888888888776654431      256788999999999999998632   33334333 357777788776


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHh----hhc-cCCCchhHHHHHhhhhhhhhccCcccccccchhhHHHhhcCCcc
Q psy16876        707 LIPKLMLDGLFISIVAFSINISMASILA----KKK-YKIDSNQELLASGVSNIFASFFSCIPFASSLSRSLVQLQVGGKT  781 (1124)
Q Consensus       707 ~~~~ll~~~~~iaiv~~~esi~ia~~~~----~~g-~~~d~nqELiA~GlaNivgglfGg~P~t~s~srSav~~~sGarT  781 (1124)
                      .  ..+...+.++++.++|++......+    ++. ++.+.|||+++||++|++||+|||+|.|++..++++...+|++|
T Consensus       225 ~--~~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~p~Tt~~en~g~i~~tg~~s  302 (429)
T 3qe7_A          225 W--FAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYS  302 (429)
T ss_dssp             H--HHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHHHHTBCC
T ss_pred             H--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCCCcchHHHhHHHHHhcCCcc
Confidence            3  3345567788899999877654443    222 46689999999999999999999999886555556777899999


Q ss_pred             cchhHHHHHHHHHHHHH--HHHHHhhcchhHHHHHHHHHHHHHhhhhHHHHHH--HhcCcch
Q psy16876        782 QLASGVSCVLLVLILLY--IGPFFETLPYCVLTSIVIVAVKGMLNQVKDLKLA--FKESYTE  839 (1124)
Q Consensus       782 rlagivtgvl~ll~llf--l~pll~~IP~avLAaiLI~vg~~mi~~~~~i~~l--~r~~~~D  839 (1124)
                      |++++++|++++++.++  ++++++.||.+++||++++ .++|+. +..++.+  .+.++.+
T Consensus       303 r~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~-lfg~i~-~~Gi~~l~~~~v~~~~  362 (429)
T 3qe7_A          303 TWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLL-LYGVIG-ASGIRVLIESKVDYNK  362 (429)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHH-HHHHHH-HHHHHHHHHTTSCTTS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHH-HHHHHHHHhcCCCCCC
Confidence            99999999988877654  6899999999999998766 899996 7888877  6777643

PyMOL of 3qe7

>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}	Back alignment and structure

>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*	Back alignment and structure

>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*	Back alignment and structure

>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}	Back alignment and structure

>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}	Back alignment and structure

>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A	Back alignment and structure

>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*	Back alignment and structure

>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A	Back alignment and structure

>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}	Back alignment and structure

>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}	Back alignment and structure

>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A	Back alignment and structure

>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A	Back alignment and structure

>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*	Back alignment and structure

>3agd_A Salt-tolerant glutaminase; glutaminase super family, hydrolase; 2.20A {Micrococcus luteus} PDB: 3age_A* 3if5_A 3ih8_A 3ih9_A 3iha_A* 3ihb_A 2dfw_A	Back alignment and structure

>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1124
d1th8b_		115	c.13.2.1 (B:) Anti-sigma factor antagonist SpoIIaa	2e-07
d1vc1a_		110	c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa	3e-07

>d1th8b_ c.13.2.1 (B:) Anti-sigma factor antagonist SpoIIaa {Bacillus stearothermophilus [TaxId: 1422]} Length = 115	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: SpoIIaa-like
family: Anti-sigma factor antagonist SpoIIaa
domain: Anti-sigma factor antagonist SpoIIaa
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 14/81 (17%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 905 GIVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYK 964
            ++I+R+ G ++    +++  ++    +      + I+L++  L+ +D+S +   L  YK
Sbjct: 11  DVLIVRLSGELDHHTAEELREQV--TDVLENRAIRHIVLNLGQLTFMDSSGLGVILGRYK 68

Query: 965 ELMEQGISLHIVKLLEPVKQV 985
           ++   G  + +  +   VK++
Sbjct: 69  QIKNVGGQMVVCAVSPAVKRL 89

PyMOL of d1th8b_

>d1vc1a_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Thermotoga maritima [TaxId: 2336]} Length = 110	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1124
d1vc1a_		110	Anti-sigma factor antagonist SpoIIaa {Thermotoga m	99.15
d1h4xa_		111	Anti-sigma factor antagonist SpoIIaa {Bacillus sph	99.12
d1th8b_		115	Anti-sigma factor antagonist SpoIIaa {Bacillus ste	99.09

>d1vc1a_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: SpoIIaa-like
family: Anti-sigma factor antagonist SpoIIaa
domain: Anti-sigma factor antagonist SpoIIaa
species: Thermotoga maritima [TaxId: 2336]

Probab=99.15  E-value=3.1e-11  Score=112.80  Aligned_cols=91  Identities=19%  Similarity=0.294  Sum_probs=82.0

Q ss_pred             CcEEEEEEecceeecchHHHHHHHHhhhccCCCCCcEEEEEccCCCccchHHHHHHHHHHHHHHHcCcEEEEEecCchhh
Q psy16876        904 PGIVILRIIGGMNFINKDKVFHKISKLSLSSEPYPKQIILDMMSLSSVDTSTVKSFLDLYKELMEQGISLHIVKLLEPVK  983 (1124)
Q Consensus       904 ~~i~vvrl~G~LfF~na~~l~~~I~~~~~~~~~~~~~VILD~s~V~~IDsSa~~~L~~l~~~l~~~gi~L~l~~l~~~v~  983 (1124)
                      +++.+++++|+|+|.|+..|++.+.+...  .++.+.|||||++|++||+||+++|.++.+.++++|+++.|++++++++
T Consensus        12 ~~~~vv~l~G~l~~~~~~~~~~~l~~~~~--~~~~~~vvid~~~v~~iDssg~~~l~~~~~~~~~~~~~l~l~~~~~~v~   89 (110)
T d1vc1a_          12 DDKAIVRVQGDIDAYNSSELKEQLRNFIS--TTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSLKESIS   89 (110)
T ss_dssp             TTEEEEEEESCBSTTTHHHHHHHHHHHHH--HCCCSEEEEEEEECCCBCHHHHHHHHHHHHHHHHTTCEEEEESCCHHHH
T ss_pred             CCEEEEEEEEEEEhHHHHHHHHHHHHHHh--cCCCCEEEEEEECCCccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence            47899999999999999999999987642  3456899999999999999999999999999999999999999999999


Q ss_pred             hhhcCcccccccc
Q psy16876        984 QVNSHPLLNQDDK  996 (1124)
Q Consensus       984 ~vl~~~~l~~~~~  996 (1124)
                      ++++..++.+.++
T Consensus        90 ~~l~~~gl~~~~~  102 (110)
T d1vc1a_          90 RILKLTHLDKIFK  102 (110)
T ss_dssp             HHHHHHTGGGTSE
T ss_pred             HHHHHcCCCceee
Confidence            9999887765554

PyMOL of d1vc1a_

>d1h4xa_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Bacillus sphaericus [TaxId: 1421]}	Back information, alignment and structure

>d1th8b_ c.13.2.1 (B:) Anti-sigma factor antagonist SpoIIaa {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure