Psyllid ID: psy1687

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------
Protein Sequence
MFPLHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEEP
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHcccEEEEEEHHHHHHHHHccEEEEEEcccccEEEEcccccHHHHHHHHHHHccccEEccccccccccccccccccHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHccccEEEEEEHHHHHHHHHccEEEEEEcccccEEEEcccHHHHHHHHHHHHccccEEEcccccccccccccccHHHHHHHHcccEEEEccc
Coil and Loop (DISEMBL)
MFPLHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRvivfegspsistlanaPQNLLNGMNKFLSLLGItfrrdpnnfrprinknnsvkdceqkragqyffyeep
Flexible Loop (DISEMBL)
MFPLHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLGITfrrdpnnfrprinknnsvkdceqkragqyffyeep
Low Complexity Region (SEG)
MFPLHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEEP
Disordered region (IsUnstruct)
***LHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLGITFRRD************************YFF****
Disordered Region (DISOPRED)
*FPLHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLGITFRRDPNNFRPRIN**********KRAGQYFFYE**
Disordered Region (DISEMBL)
MFPLHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEEP
Disordered Region (DISPRO)
MFPLHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFPLHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEEP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	107	2.2.26 [Sep-21-2011]
P61222	599	ATP-binding cassette sub-	yes	N/A	0.943	0.168	0.732	2e-39
P61221	599	ATP-binding cassette sub-	yes	N/A	0.943	0.168	0.732	2e-39
Q8LPJ4	605	ABC transporter E family	yes	N/A	0.906	0.160	0.734	6e-37
Q9LID6	603	ABC transporter E family	no	N/A	0.850	0.150	0.693	1e-36
Q03195	608	Translation initiation fa	yes	N/A	0.831	0.146	0.659	9e-32
O60102	593	Translation initiation fa	yes	N/A	0.906	0.163	0.649	3e-31
Q58129	600	Uncharacterized ABC trans	yes	N/A	0.878	0.156	0.438	5e-19

>sp|P61222|ABCE1_MOUSE ATP-binding cassette sub-family E member 1 OS=Mus musculus GN=Abce1 PE=2 SV=1

 Score =  160 bits (405), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 74/101 (73%), Positives = 88/101 (87%)

Query: 6   LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKF 65
           +  +V+KRFILHAKKT FVVEHDFIMATYL+DRVIVF+G PS +T+AN+PQ LL GMNKF
Sbjct: 499 MAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIVFDGVPSKNTVANSPQTLLAGMNKF 558

Query: 66  LSLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
           LS L ITFRRDPNN+RPRINK NS+KD EQK++G YFF ++
Sbjct: 559 LSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNYFFLDD 599

Antagonizes the binding of 2-5A (5'-phosphorylated 2',5'-linked oligoadenylates) by RNase L through direct interaction with RNase L and therefore inhibits its endoribonuclease activity. May play a central role in the regulation of mRNA turnover. Antagonizes the anti-viral effect of the interferon-regulated 2-5A/RNase L pathway.
Mus musculus (taxid: 10090)

>sp|P61221|ABCE1_HUMAN ATP-binding cassette sub-family E member 1 OS=Homo sapiens GN=ABCE1 PE=1 SV=1

 Score =  160 bits (405), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 74/101 (73%), Positives = 88/101 (87%)

Query: 6   LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKF 65
           +  +V+KRFILHAKKT FVVEHDFIMATYL+DRVIVF+G PS +T+AN+PQ LL GMNKF
Sbjct: 499 MAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIVFDGVPSKNTVANSPQTLLAGMNKF 558

Query: 66  LSLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
           LS L ITFRRDPNN+RPRINK NS+KD EQK++G YFF ++
Sbjct: 559 LSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNYFFLDD 599

Antagonizes the binding of 2-5A (5'-phosphorylated 2',5'-linked oligoadenylates) by RNase L through direct interaction with RNase L and therefore inhibits its endoribonuclease activity. May play a central role in the regulation of mRNA turnover. Antagonizes the anti-viral effect of the interferon-regulated 2-5A/RNase L pathway. May act as a chaperone for post-translational events during HIV-1 capsid assembly.

Homo sapiens (taxid: 9606)

>sp|Q8LPJ4|AB2E_ARATH ABC transporter E family member 2 OS=Arabidopsis thaliana GN=ABCE2 PE=2 SV=1

 Score =  152 bits (384), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 72/98 (73%), Positives = 81/98 (82%)

Query: 9   QVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSL 68
           +VIKRFILHAKKT FVVEHDFIMATYL+DRVIV+EG PSI   AN PQ+LL+GMN FLS 
Sbjct: 508 KVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSIDCTANCPQSLLSGMNLFLSH 567

Query: 69  LGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
           L ITFRRDP NFRPRINK  S KD EQK AG Y++ ++
Sbjct: 568 LNITFRRDPTNFRPRINKLESTKDREQKSAGSYYYLDD 605

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LID6|AB1E_ARATH ABC transporter E family member 1 OS=Arabidopsis thaliana GN=ABCE1 PE=2 SV=1

 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 68/98 (69%), Positives = 84/98 (85%)

Query: 9   QVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSL 68
           +VIKRFILHAKKT F+VEHDFIMATYL+DRVIV+EG P++  +A++PQ+LL+GMN FLS 
Sbjct: 506 KVIKRFILHAKKTAFIVEHDFIMATYLADRVIVYEGQPAVKCIAHSPQSLLSGMNHFLSH 565

Query: 69  LGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
           L ITFRRDP NFRPRINK  S+KD EQK AG Y++ ++
Sbjct: 566 LNITFRRDPTNFRPRINKLESIKDKEQKTAGSYYYLDD 603

Arabidopsis thaliana (taxid: 3702)

>sp|Q03195|RLI1_YEAST Translation initiation factor RLI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RLI1 PE=1 SV=1

 Score =  135 bits (339), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 64/97 (65%), Positives = 78/97 (80%)

Query: 9   QVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSL 68
           +VI+RFILH KKT F+VEHDFIMATYL+D+VIVFEG PS +  A AP++LL G N+FL  
Sbjct: 508 KVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKN 567

Query: 69  LGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYE 105
           L +TFRRDPN+FRPRINK +S  D EQK +G YFF +
Sbjct: 568 LNVTFRRDPNSFRPRINKLDSQMDKEQKSSGNYFFLD 604

Component of the multifactor complex (MFC) involved in translation initiation. Required for the binding of MFC to the 40S ribosome. Required for the processing and nuclear export of the 60S and 40S ribosomal subunits.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O60102|RLI1_SCHPO Translation initiation factor rli1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rli1 PE=3 SV=1

 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 63/97 (64%), Positives = 75/97 (77%)

Query: 9   QVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSL 68
           +VI+RFI++++KT F+VEHDFIMATYL+DRVI+FEG PS     N PQ+LL GMN FL  
Sbjct: 496 KVIRRFIVNSRKTAFIVEHDFIMATYLADRVILFEGQPSRDARCNPPQSLLTGMNTFLKN 555

Query: 69  LGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYE 105
           L +TFRRDPN  RPRINK +S  D EQK AG YFF E
Sbjct: 556 LDVTFRRDPNTLRPRINKFDSQMDQEQKNAGNYFFLE 592

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q58129|Y719_METJA Uncharacterized ABC transporter ATP-binding protein MJ0719 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0719 PE=3 SV=1

 Score = 92.8 bits (229), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 43/98 (43%), Positives = 59/98 (60%)

Query: 9   QVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSL 68
           +VI+R     +   FVV+HD +   Y+SDR IVF G P    + ++P N  +G NKFL  
Sbjct: 503 KVIRRIADEKEAGMFVVDHDILFQDYISDRFIVFSGEPGKFGVGSSPMNKRDGANKFLKE 562

Query: 69  LGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
           + ITFRRDP   RPR NK  S +D  QK  G+Y++ +E
Sbjct: 563 MQITFRRDPETGRPRANKEGSQRDIMQKEKGEYYYVDE 600

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
157125068	609	abc transporter, putative [Aedes aegypti	0.869	0.152	0.821	2e-43
322791201	608	hypothetical protein SINV_11846 [Solenop	0.943	0.166	0.831	2e-43
332017503	602	ATP-binding cassette sub-family E member	0.943	0.167	0.821	2e-43
119112994	609	AGAP002182-PA [Anopheles gambiae str. PE	0.869	0.152	0.821	5e-43
156537914	608	PREDICTED: ATP-binding cassette sub-fami	0.943	0.166	0.821	5e-43
307211114	608	ATP-binding cassette sub-family E member	0.943	0.166	0.811	6e-43
308512759	608	pixie [Biston betularia]	0.943	0.166	0.821	8e-43
383852400	583	PREDICTED: ATP-binding cassette sub-fami	0.943	0.173	0.811	1e-42
312379331	609	hypothetical protein AND_08865 [Anophele	0.869	0.152	0.811	1e-42
170041905	609	ATP-binding cassette sub-family E member	0.869	0.152	0.811	1e-42

>gi|157125068|ref|XP_001660605.1| abc transporter, putative [Aedes aegypti] gi|108873788|gb|EAT38013.1| AAEL010059-PA [Aedes aegypti]

 Score =  179 bits (454), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/101 (82%), Positives = 91/101 (90%)

Query: 6   LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKF 65
           +  +VIKR+ILHAKKTGFVVEHDFIMATYL+DRVIVFEG PS+ T A+ PQ+LLNGMN+F
Sbjct: 508 IAAKVIKRYILHAKKTGFVVEHDFIMATYLADRVIVFEGKPSVDTTAHTPQSLLNGMNRF 567

Query: 66  LSLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
           L LL ITFRRDPNNFRPRINK NSVKD EQKRAGQYFFYEE
Sbjct: 568 LELLEITFRRDPNNFRPRINKTNSVKDTEQKRAGQYFFYEE 608

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322791201|gb|EFZ15738.1| hypothetical protein SINV_11846 [Solenopsis invicta]

 Score =  179 bits (454), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/101 (83%), Positives = 93/101 (92%)

Query: 6   LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKF 65
           +  +VIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF G+PS+ST A++PQ+LLNGMN+F
Sbjct: 508 VAAKVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFSGTPSLSTTAHSPQSLLNGMNRF 567

Query: 66  LSLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
           L LLGITFRRDPNNFRPRINK+ SVKD EQKRAGQYFF EE
Sbjct: 568 LELLGITFRRDPNNFRPRINKSQSVKDLEQKRAGQYFFLEE 608

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017503|gb|EGI58223.1| ATP-binding cassette sub-family E member 1 [Acromyrmex echinatior]

 Score =  179 bits (453), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/101 (82%), Positives = 93/101 (92%)

Query: 6   LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKF 65
           +  +VIKRFILHAKKTGFVVEHDFIMATYL+DRVIVF G+PS++T A++PQ+LLNGMN+F
Sbjct: 502 VAAKVIKRFILHAKKTGFVVEHDFIMATYLADRVIVFSGTPSLATTAHSPQSLLNGMNRF 561

Query: 66  LSLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
           L LLGITFRRDPNNFRPRINKN SVKD EQKRAGQYFF EE
Sbjct: 562 LELLGITFRRDPNNFRPRINKNQSVKDLEQKRAGQYFFLEE 602

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|119112994|ref|XP_308004.3| AGAP002182-PA [Anopheles gambiae str. PEST] gi|116132836|gb|EAA03798.3| AGAP002182-PA [Anopheles gambiae str. PEST]

 Score =  178 bits (451), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 83/101 (82%), Positives = 91/101 (90%)

Query: 6   LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKF 65
           +  +VIKR+ILHAKKTGFVVEHDFIMATYL+DRVIVFEG PS+ T A+ PQ+LLNGMN+F
Sbjct: 508 IAAKVIKRYILHAKKTGFVVEHDFIMATYLADRVIVFEGQPSVDTTAHTPQSLLNGMNRF 567

Query: 66  LSLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
           L LL ITFRRDPNNFRPRINK NSVKD EQKRAGQYFFYEE
Sbjct: 568 LELLEITFRRDPNNFRPRINKLNSVKDVEQKRAGQYFFYEE 608

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156537914|ref|XP_001608142.1| PREDICTED: ATP-binding cassette sub-family E member 1-like [Nasonia vitripennis]

 Score =  177 bits (450), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 83/101 (82%), Positives = 92/101 (91%)

Query: 6   LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKF 65
           +  +VIKRFILHAKKTGFVVEHDFIMATYL+DRVIVF G+PS+ T A++PQ+LLNGMN+F
Sbjct: 508 VAAKVIKRFILHAKKTGFVVEHDFIMATYLADRVIVFSGTPSLRTAAHSPQSLLNGMNRF 567

Query: 66  LSLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
           L LLGITFRRDPNNFRPRINKN SVKD EQKRAGQYFF EE
Sbjct: 568 LELLGITFRRDPNNFRPRINKNQSVKDLEQKRAGQYFFLEE 608

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211114|gb|EFN87340.1| ATP-binding cassette sub-family E member 1 [Harpegnathos saltator]

 Score =  177 bits (450), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 82/101 (81%), Positives = 93/101 (92%)

Query: 6   LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKF 65
           +  +VIKRFILHAKKTGFVVEHDFIMATYL+DRVIVF G+PS++T A++PQ+LLNGMN+F
Sbjct: 508 VAAKVIKRFILHAKKTGFVVEHDFIMATYLADRVIVFSGTPSLATTAHSPQSLLNGMNRF 567

Query: 66  LSLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
           L LLGITFRRDPNNFRPRINKN SVKD EQK+AGQYFF EE
Sbjct: 568 LELLGITFRRDPNNFRPRINKNQSVKDLEQKKAGQYFFLEE 608

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|308512759|gb|ADO33033.1| pixie [Biston betularia]

 Score =  177 bits (449), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 83/101 (82%), Positives = 93/101 (92%)

Query: 6   LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKF 65
           +  +VIKRFILHAK+TGFVVEHDFIMATYL+DRVIVFEG+PS +  A+APQ+LLNGMNKF
Sbjct: 508 VAAKVIKRFILHAKRTGFVVEHDFIMATYLADRVIVFEGTPSSNATAHAPQSLLNGMNKF 567

Query: 66  LSLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
           L LLGITFRRDPNNFRPRINKN+SVKD EQKRAGQYFF E+
Sbjct: 568 LELLGITFRRDPNNFRPRINKNSSVKDIEQKRAGQYFFLED 608

Source: Biston betularia

Species: Biston betularia

Genus: Biston

Family: Geometridae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852400|ref|XP_003701716.1| PREDICTED: ATP-binding cassette sub-family E member 1 [Megachile rotundata]

 Score =  177 bits (448), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/101 (81%), Positives = 93/101 (92%)

Query: 6   LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKF 65
           +  +VIKRFILHAKKTGFVVEHDFIMATYL+DRVIVF G+PS+ST A++PQ+LLNGMN+F
Sbjct: 483 VAAKVIKRFILHAKKTGFVVEHDFIMATYLADRVIVFSGTPSLSTTAHSPQSLLNGMNRF 542

Query: 66  LSLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
           L LLGITFRRDPNNFRPRINK+ SVKD EQK+AGQYFF EE
Sbjct: 543 LELLGITFRRDPNNFRPRINKSQSVKDLEQKKAGQYFFLEE 583

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312379331|gb|EFR25642.1| hypothetical protein AND_08865 [Anopheles darlingi]

 Score =  176 bits (446), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/101 (81%), Positives = 91/101 (90%)

Query: 6   LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKF 65
           +  +VIKR+ILHAKKTGFVVEHDFIMATYL+DRVIVFEG PS+ T A+ PQ+LLNGMN+F
Sbjct: 508 IAAKVIKRYILHAKKTGFVVEHDFIMATYLADRVIVFEGQPSVDTTAHTPQSLLNGMNRF 567

Query: 66  LSLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
           L LL ITFRRDPNNFRPRINK +SVKD EQKRAGQYFFYEE
Sbjct: 568 LELLEITFRRDPNNFRPRINKLHSVKDVEQKRAGQYFFYEE 608

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170041905|ref|XP_001848687.1| ATP-binding cassette sub-family E member 1 [Culex quinquefasciatus] gi|167865481|gb|EDS28864.1| ATP-binding cassette sub-family E member 1 [Culex quinquefasciatus]

 Score =  176 bits (446), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/101 (81%), Positives = 90/101 (89%)

Query: 6   LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKF 65
           +  +VIKR+ILHAKKTGFVVEHDFIMATYL+DRVIVFEG PS+ T A+ PQ+LLNGMN+F
Sbjct: 508 VAAKVIKRYILHAKKTGFVVEHDFIMATYLADRVIVFEGKPSVDTTAHTPQSLLNGMNRF 567

Query: 66  LSLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
           L LL ITFRRDPNNFRPRINK NSVKD EQKR GQYFFYEE
Sbjct: 568 LELLEITFRRDPNNFRPRINKLNSVKDSEQKRCGQYFFYEE 608

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
FB|FBgn0086706	611	pix "pixie" [Drosophila melano	0.915	0.160	0.816	4.2e-40
UNIPROTKB|F1P2B6	471	ABCE1 "Uncharacterized protein	0.943	0.214	0.732	1.7e-36
UNIPROTKB|A4IFE6	599	ABCE1 "ABCE1 protein" [Bos tau	0.943	0.168	0.732	1.9e-36
UNIPROTKB|E2R642	599	ABCE1 "Uncharacterized protein	0.943	0.168	0.732	1.9e-36
UNIPROTKB|P61221	599	ABCE1 "ATP-binding cassette su	0.943	0.168	0.732	1.9e-36
UNIPROTKB|F1RS49	599	ABCE1 "Uncharacterized protein	0.943	0.168	0.732	1.9e-36
MGI|MGI:1195458	599	Abce1 "ATP-binding cassette, s	0.943	0.168	0.732	1.9e-36
RGD|1305301	599	Abce1 "ATP-binding cassette, s	0.943	0.168	0.732	1.9e-36
ZFIN|ZDB-GENE-040426-1995	599	abce1 "ATP-binding cassette, s	0.943	0.168	0.752	1.9e-36
UNIPROTKB|F6X725	600	ABCE1 "Uncharacterized protein	0.943	0.168	0.732	2e-36

FB|FBgn0086706 pix "pixie" [Drosophila melanogaster (taxid:7227)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 80/98 (81%), Positives = 90/98 (91%)

Query:     9 QVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSL 68
             +VIKR+ILHAKKTGFVVEHDFIMATYL+DRVIV EG PS+ T A +PQ+LLNGMN+FL L
Sbjct:   510 KVIKRYILHAKKTGFVVEHDFIMATYLADRVIVIEGQPSVKTTAFSPQSLLNGMNRFLEL 569

Query:    69 LGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
             LGITFRRDPNNFRPRINKNNSVKD EQKR+GQ+FF E+
Sbjct:   570 LGITFRRDPNNFRPRINKNNSVKDTEQKRSGQFFFLED 607

GO:0008428 "ribonuclease inhibitor activity" evidence=ISS

GO:0016071 "mRNA metabolic process" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS;IDA;NAS

GO:0005524 "ATP binding" evidence=IMP;NAS

GO:0040007 "growth" evidence=NAS

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006412 "translation" evidence=IMP

GO:0016049 "cell growth" evidence=IMP

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IMP

GO:0006413 "translational initiation" evidence=IMP

GO:0043024 "ribosomal small subunit binding" evidence=IDA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IDA

UNIPROTKB|F1P2B6 ABCE1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 74/101 (73%), Positives = 88/101 (87%)

Query:     6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKF 65
             +  +V+KRFILHAKKT FVVEHDFIMATYL+DRVIVF+G PS +T+AN+PQ LL GMNKF
Sbjct:   371 MAARVMKRFILHAKKTAFVVEHDFIMATYLADRVIVFDGVPSKNTVANSPQTLLAGMNKF 430

Query:    66 LSLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
             LS L ITFRRDPNN+RPRINK NS+KD EQK++G YFF ++
Sbjct:   431 LSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNYFFLDD 471

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|A4IFE6 ABCE1 "ABCE1 protein" [Bos taurus (taxid:9913)]

 Score = 395 (144.1 bits), Expect = 1.9e-36, P = 1.9e-36
 Identities = 74/101 (73%), Positives = 88/101 (87%)

Query:     6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKF 65
             +  +V+KRFILHAKKT FVVEHDFIMATYL+DRVIVF+G PS +T+AN+PQ LL GMNKF
Sbjct:   499 MAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIVFDGVPSKNTVANSPQTLLAGMNKF 558

Query:    66 LSLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
             LS L ITFRRDPNN+RPRINK NS+KD EQK++G YFF ++
Sbjct:   559 LSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNYFFLDD 599

GO:0005739 "mitochondrion" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

UNIPROTKB|E2R642 ABCE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 395 (144.1 bits), Expect = 1.9e-36, P = 1.9e-36
 Identities = 74/101 (73%), Positives = 88/101 (87%)

Query:     6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKF 65
             +  +V+KRFILHAKKT FVVEHDFIMATYL+DRVIVF+G PS +T+AN+PQ LL GMNKF
Sbjct:   499 MAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIVFDGIPSKNTVANSPQTLLAGMNKF 558

Query:    66 LSLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
             LS L ITFRRDPNN+RPRINK NS+KD EQK++G YFF ++
Sbjct:   559 LSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNYFFLDD 599

GO:0005739 "mitochondrion" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

UNIPROTKB|P61221 ABCE1 "ATP-binding cassette sub-family E member 1" [Homo sapiens (taxid:9606)]

 Score = 395 (144.1 bits), Expect = 1.9e-36, P = 1.9e-36
 Identities = 74/101 (73%), Positives = 88/101 (87%)

Query:     6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKF 65
             +  +V+KRFILHAKKT FVVEHDFIMATYL+DRVIVF+G PS +T+AN+PQ LL GMNKF
Sbjct:   499 MAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIVFDGVPSKNTVANSPQTLLAGMNKF 558

Query:    66 LSLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
             LS L ITFRRDPNN+RPRINK NS+KD EQK++G YFF ++
Sbjct:   559 LSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNYFFLDD 599

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006401 "RNA catabolic process" evidence=TAS

GO:0008428 "ribonuclease inhibitor activity" evidence=TAS

GO:0009615 "response to virus" evidence=TAS

UNIPROTKB|F1RS49 ABCE1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 395 (144.1 bits), Expect = 1.9e-36, P = 1.9e-36
 Identities = 74/101 (73%), Positives = 88/101 (87%)

Query:     6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKF 65
             +  +V+KRFILHAKKT FVVEHDFIMATYL+DRVIVF+G PS +T+AN+PQ LL GMNKF
Sbjct:   499 MAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIVFDGIPSKNTVANSPQTLLAGMNKF 558

Query:    66 LSLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
             LS L ITFRRDPNN+RPRINK NS+KD EQK++G YFF ++
Sbjct:   559 LSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNYFFLDD 599

GO:0005739 "mitochondrion" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

MGI|MGI:1195458 Abce1 "ATP-binding cassette, sub-family E (OABP), member 1" [Mus musculus (taxid:10090)]

 Score = 395 (144.1 bits), Expect = 1.9e-36, P = 1.9e-36
 Identities = 74/101 (73%), Positives = 88/101 (87%)

Query:     6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKF 65
             +  +V+KRFILHAKKT FVVEHDFIMATYL+DRVIVF+G PS +T+AN+PQ LL GMNKF
Sbjct:   499 MAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIVFDGVPSKNTVANSPQTLLAGMNKF 558

Query:    66 LSLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
             LS L ITFRRDPNN+RPRINK NS+KD EQK++G YFF ++
Sbjct:   559 LSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNYFFLDD 599

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

RGD|1305301 Abce1 "ATP-binding cassette, subfamily E (OABP), member 1" [Rattus norvegicus (taxid:10116)]

 Score = 395 (144.1 bits), Expect = 1.9e-36, P = 1.9e-36
 Identities = 74/101 (73%), Positives = 88/101 (87%)

Query:     6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKF 65
             +  +V+KRFILHAKKT FVVEHDFIMATYL+DRVIVF+G PS +T+AN+PQ LL GMNKF
Sbjct:   499 MAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIVFDGVPSKNTVANSPQTLLAGMNKF 558

Query:    66 LSLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
             LS L ITFRRDPNN+RPRINK NS+KD EQK++G YFF ++
Sbjct:   559 LSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNYFFLDD 599

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1995 abce1 "ATP-binding cassette, sub-family E (OABP), member 1" [Danio rerio (taxid:7955)]

 Score = 395 (144.1 bits), Expect = 1.9e-36, P = 1.9e-36
 Identities = 76/101 (75%), Positives = 87/101 (86%)

Query:     6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKF 65
             +  +VIKRFILHAKKT FVVEHDFIMATYL+DRVIVF+G PS +T ANAPQ LL GMNKF
Sbjct:   499 MAARVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFDGIPSRTTNANAPQTLLAGMNKF 558

Query:    66 LSLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
             L+ L ITFRRDPNNFRPRINK NS+KD EQK++G YFF ++
Sbjct:   559 LAQLEITFRRDPNNFRPRINKLNSIKDVEQKKSGNYFFLDD 599

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

UNIPROTKB|F6X725 ABCE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 395 (144.1 bits), Expect = 2.0e-36, P = 2.0e-36
 Identities = 74/101 (73%), Positives = 88/101 (87%)

Query:     6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKF 65
             +  +V+KRFILHAKKT FVVEHDFIMATYL+DRVIVF+G PS +T+AN+PQ LL GMNKF
Sbjct:   500 MAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIVFDGIPSKNTVANSPQTLLAGMNKF 559

Query:    66 LSLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
             LS L ITFRRDPNN+RPRINK NS+KD EQK++G YFF ++
Sbjct:   560 LSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNYFFLDD 600

GO:0005524 "ATP binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O60102	RLI1_SCHPO	No assigned EC number	0.6494	0.9065	0.1635	yes	N/A
Q8LPJ4	AB2E_ARATH	No assigned EC number	0.7346	0.9065	0.1603	yes	N/A
P61222	ABCE1_MOUSE	No assigned EC number	0.7326	0.9439	0.1686	yes	N/A
P61221	ABCE1_HUMAN	No assigned EC number	0.7326	0.9439	0.1686	yes	N/A
Q03195	RLI1_YEAST	No assigned EC number	0.6597	0.8317	0.1463	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	107
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	6e-54
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	2e-46
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	8e-40
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	8e-29
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	5e-05
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	7e-05

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score =  167 bits (426), Expect = 6e-54
 Identities = 57/91 (62%), Positives = 70/91 (76%)

Query: 9   QVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSL 68
           +VI+RF  + +KT FVVEHD IM  YL+DR+IVFEG PS++ +AN PQ+L +GMN+FL  
Sbjct: 156 KVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLRSGMNRFLKN 215

Query: 69  LGITFRRDPNNFRPRINKNNSVKDCEQKRAG 99
           L ITFRRDP   RPRINK  SVKD EQK +G
Sbjct: 216 LDITFRRDPETGRPRINKLGSVKDREQKESG 246

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score =  155 bits (395), Expect = 2e-46
 Identities = 49/95 (51%), Positives = 64/95 (67%)

Query: 10  VIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLL 69
           VI+RFI + +KT  VV+HD  M  Y+SDR+IVFEG P     A+ P ++  GMN+FL  L
Sbjct: 497 VIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEGEPGKHGHASPPMSMREGMNRFLKNL 556

Query: 70  GITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFY 104
           G+TFRRDP   RPR+NK  S  D EQK  G+Y++ 
Sbjct: 557 GVTFRRDPETGRPRVNKPGSQLDREQKERGEYYYA 591

Length = 591

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score =  138 bits (350), Expect = 8e-40
 Identities = 44/96 (45%), Positives = 59/96 (61%)

Query: 10  VIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLL 69
            I+R     + T  VV+HD  M  Y+SDR++VFEG P     A+ P ++  GMN+FL  L
Sbjct: 495 AIRRIAEEREATALVVDHDIYMIDYISDRLMVFEGEPGKHGHASGPMDMREGMNRFLKEL 554

Query: 70  GITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYE 105
           GITFRRD    RPR+NK  S  D EQK  G+Y++ +
Sbjct: 555 GITFRRDEETGRPRVNKPGSYLDREQKERGEYYYAD 590

Length = 590

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score =  101 bits (254), Expect = 8e-29
 Identities = 30/66 (45%), Positives = 40/66 (60%)

Query: 9   QVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSL 68
           + I+R     KKT  VVEHD  +  YLSDR+ VFEG P +  +A+ P+    G+N+FL  
Sbjct: 112 RAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTREGINRFLRG 171

Query: 69  LGITFR 74
             ITFR
Sbjct: 172 YLITFR 177

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 40.0 bits (94), Expect = 5e-05
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 9   QVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSL 68
           ++I+           VVEHD  +  YLSD +    G P    +   P+++  G+N+FL  
Sbjct: 180 RLIRELAEDDNYV-LVVEHDLAVLDYLSDYIHCLYGEPGAYGVVTLPKSVREGINEFLD- 237

Query: 69  LGITFRRDPN-NFRP 82
               +    N  FR 
Sbjct: 238 ---GYLPTENMRFRE 249

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 8/75 (10%)

Query: 13  RFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLG-- 70
           R +    K   VVEHD  +  YLSD V +  G P +  + + P+++  G+N++L   G  
Sbjct: 257 RELAEDGKYVIVVEHDLAVLDYLSDFVHILYGEPGVYGVVSKPKSVRVGINEYLK--GYL 314

Query: 71  ----ITFRRDPNNFR 81
               + FR +   F 
Sbjct: 315 PEENVRFRPEEIEFE 329

Length = 591

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	107
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.85
PRK13409	590	putative ATPase RIL; Provisional	99.84
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.83
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.54
KOG0063|consensus	592		99.39
COG4559	259	ABC-type hemin transport system, ATPase component	99.27
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.21
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.15
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.02
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	98.98
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	98.93
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	98.92
COG0411	250	LivG ABC-type branched-chain amino acid transport	98.92
COG1127	263	Ttg2A ABC-type transport system involved in resist	98.91
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.89
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	98.88
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.87
COG1123	539	ATPase components of various ABC-type transport sy	98.83
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	98.79
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	98.76
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	98.75
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.74
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	98.72
COG3638	258	ABC-type phosphate/phosphonate transport system, A	98.72
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	98.71
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.7
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	98.7
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	98.7
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.68
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	98.68
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.68
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	98.68
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.68
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	98.67
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.67
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.66
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.66
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.65
COG1123	539	ATPase components of various ABC-type transport sy	98.64
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.63
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	98.63
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	98.6
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.6
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	98.6
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	98.6
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	98.59
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	98.58
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	98.58
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	98.55
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.55
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	98.55
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.54
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.54
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	98.54
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.54
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	98.54
COG4172	534	ABC-type uncharacterized transport system, duplica	98.53
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	98.53
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.51
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	98.51
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.51
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	98.5
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.5
PRK03695	248	vitamin B12-transporter ATPase; Provisional	98.5
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	98.49
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	98.49
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	98.49
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	98.49
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	98.49
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.49
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.48
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	98.47
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.47
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.46
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	98.46
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.46
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	98.45
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.44
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	98.44
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.44
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	98.44
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.44
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.44
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.44
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.44
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.44
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	98.44
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.44
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.43
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	98.43
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.43
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.43
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	98.43
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.43
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.43
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	98.42
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.42
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.41
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.41
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	98.41
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	98.41
PRK09984	262	phosphonate/organophosphate ester transporter subu	98.41
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	98.4
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	98.4
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	98.4
COG4172	534	ABC-type uncharacterized transport system, duplica	98.4
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.39
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.39
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	98.39
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	98.38
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.38
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	98.38
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.37
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.37
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.37
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	98.37
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	98.37
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.37
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	98.36
PRK13546	264	teichoic acids export protein ATP-binding subunit;	98.36
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.36
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	98.36
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	98.35
COG4598	256	HisP ABC-type histidine transport system, ATPase c	98.35
COG4525	259	TauB ABC-type taurine transport system, ATPase com	98.35
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.35
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	98.35
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	98.33
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.32
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.32
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.32
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	98.31
cd03299	235	ABC_ModC_like Archeal protein closely related to M	98.31
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.31
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	98.3
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	98.29
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	98.29
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	98.29
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	98.29
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	98.28
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.28
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.28
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.28
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.27
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	98.27
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.27
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.26
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	98.26
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	98.26
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.26
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.25
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	98.25
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.25
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	98.25
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.24
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.24
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.24
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	98.24
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	98.24
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.23
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	98.22
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	98.22
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	98.22
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.22
COG4586	325	ABC-type uncharacterized transport system, ATPase	98.22
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.22
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	98.22
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.22
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	98.22
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	98.21
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.21
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	98.21
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	98.2
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.2
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.2
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	98.2
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	98.2
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	98.2
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	98.2
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	98.19
PRK10938	490	putative molybdenum transport ATP-binding protein	98.19
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.18
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.18
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.17
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	98.17
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.17
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.17
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	98.17
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.16
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	98.16
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	98.16
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.16
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	98.15
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	98.15
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	98.15
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	98.14
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.14
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.14
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.14
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.13
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.13
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	98.13
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	98.13
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	98.12
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.12
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	98.12
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	98.12
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	98.11
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	98.11
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.11
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	98.11
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	98.11
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.11
COG0410	237	LivF ABC-type branched-chain amino acid transport	98.1
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.1
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	98.1
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.1
COG4152	300	ABC-type uncharacterized transport system, ATPase	98.1
PRK10908	222	cell division protein FtsE; Provisional	98.1
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	98.1
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	98.1
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	98.1
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.09
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.09
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.09
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.09
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	98.08
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	98.08
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.08
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.07
PRK13409	590	putative ATPase RIL; Provisional	98.07
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	98.07
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	98.07
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.07
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	98.07
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.06
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.06
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	98.06
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.05
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	98.05
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	98.04
cd03246	173	ABCC_Protease_Secretion This family represents the	98.04
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.04
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.03
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	98.03
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	98.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	98.0
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	97.99
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	97.99
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	97.98
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	97.97
cd03234	226	ABCG_White The White subfamily represents ABC tran	97.97
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	97.93
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	97.92
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	97.91
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	97.9
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.89
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	97.89
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	97.88
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	97.88
PLN03211	659	ABC transporter G-25; Provisional	97.88
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	97.88
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	97.85
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	97.85
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	97.85
PRK10938	490	putative molybdenum transport ATP-binding protein	97.79
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	97.77
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	97.76
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	97.76
COG4988	559	CydD ABC-type transport system involved in cytochr	97.75
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	97.75
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.74
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	97.73
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	97.73
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	97.7
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.69
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	97.68
COG2884	223	FtsE Predicted ATPase involved in cell division [C	97.68
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	97.67
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	97.67
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	97.67
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	97.67
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	97.67
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	97.66
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	97.64
PRK15064	530	ABC transporter ATP-binding protein; Provisional	97.64
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	97.62
COG4181	228	Predicted ABC-type transport system involved in ly	97.62
COG4674	249	Uncharacterized ABC-type transport system, ATPase	97.62
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	97.61
PRK15064	530	ABC transporter ATP-binding protein; Provisional	97.59
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	97.59
PLN03140	1470	ABC transporter G family member; Provisional	97.58
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	97.55
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	97.49
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	97.46
KOG0059|consensus	885		97.45
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	97.41
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	97.41
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	97.41
PRK00635	1809	excinuclease ABC subunit A; Provisional	97.4
COG4987	573	CydC ABC-type transport system involved in cytochr	97.4
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	97.38
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	97.35
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	97.35
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	97.34
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	97.32
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	97.32
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	97.32
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	97.31
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	97.31
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	97.29
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	97.29
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	97.28
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	97.27
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	97.25
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	97.25
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	97.23
KOG0063|consensus	592		97.21
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	97.2
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	97.18
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	97.18
PRK10535	648	macrolide transporter ATP-binding /permease protei	97.18
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	97.17
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	97.17
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	97.16
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	97.16
PRK00635	1809	excinuclease ABC subunit A; Provisional	97.15
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	97.14
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	97.12
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	97.11
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	97.11
PRK11147	635	ABC transporter ATPase component; Reviewed	97.1
PLN03232	1495	ABC transporter C family member; Provisional	97.1
PLN03130	1622	ABC transporter C family member; Provisional	97.08
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	97.08
PLN03073	718	ABC transporter F family; Provisional	97.07
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	97.06
PLN03073	718	ABC transporter F family; Provisional	97.05
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	97.02
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	96.99
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	96.98
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	96.95
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	96.94
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	96.93
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	96.93
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	96.91
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	96.81
PTZ00243	1560	ABC transporter; Provisional	96.79
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	96.66
COG3845	501	ABC-type uncharacterized transport systems, ATPase	96.64
PRK11147	635	ABC transporter ATPase component; Reviewed	96.62
PLN03140	1470	ABC transporter G family member; Provisional	96.58
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	96.56
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	96.55
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	96.55
KOG0055|consensus	1228		96.5
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	96.32
PRK10522	547	multidrug transporter membrane component/ATP-bindi	96.3
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	96.26
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	96.2
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	96.19
cd03239	178	ABC_SMC_head The structural maintenance of chromos	96.15
PTZ00243	1560	ABC transporter; Provisional	96.14
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	96.12
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	96.05
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	96.02
KOG0057|consensus	591		96.01
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	95.92
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	95.87
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	95.85
KOG0061|consensus	613		95.78
PLN03232	1495	ABC transporter C family member; Provisional	95.65
PLN03130	1622	ABC transporter C family member; Provisional	95.49
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	95.45
KOG0054|consensus	1381		95.45
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	95.45
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	95.3
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	95.17
COG0488	530	Uup ATPase components of ABC transporters with dup	95.07
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	95.04
COG0488	530	Uup ATPase components of ABC transporters with dup	94.89
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	94.77
PRK03918	880	chromosome segregation protein; Provisional	94.61
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	94.58
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	94.51
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	94.47
PRK10869	553	recombination and repair protein; Provisional	94.38
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	94.37
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	94.2
COG4619	223	ABC-type uncharacterized transport system, ATPase	94.13
PRK02224	880	chromosome segregation protein; Provisional	93.92
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	93.88
KOG0054|consensus	1381		93.76
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	93.28
KOG0062|consensus	582		92.83
PRK01156	895	chromosome segregation protein; Provisional	92.75
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	92.66
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	92.58
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	92.08
PRK13695	174	putative NTPase; Provisional	92.06
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	91.89
PHA02562	562	46 endonuclease subunit; Provisional	91.65
PRK10246	1047	exonuclease subunit SbcC; Provisional	91.45
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	91.34
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	91.29
KOG2355|consensus	291		91.11
KOG0058|consensus	716		91.06
KOG0055|consensus	1228		90.4
PRK13830	818	conjugal transfer protein TrbE; Provisional	90.13
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	90.06
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	89.2
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	88.88
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	88.45
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	87.97
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	87.13
PRK06067	234	flagellar accessory protein FlaH; Validated	86.41
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	86.24
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	85.79
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	85.23
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	85.22
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	83.11
PRK09302	509	circadian clock protein KaiC; Reviewed	82.99
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	82.77
KOG0062|consensus	582		80.79
PRK04296	190	thymidine kinase; Provisional	80.46

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.85  E-value=2.3e-21  Score=156.88  Aligned_cols=100  Identities=49%  Similarity=0.830  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhhhhhcCeeeeeCCCCCccee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLGITFRRDPNNFRPRI   84 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~~~~~~~~~~~i   84 (107)
                      +.+.+.|||+.++.++|.++|.||+-++..++||++|+.|+|+..|....|..+.+++|.|++.++++|+||+.++|||+
T Consensus       492 ~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~GePg~~g~a~~P~~mr~GMN~FLk~l~vTFRRD~~t~RPRv  571 (591)
T COG1245         492 IIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEGEPGKHGHASPPMSMREGMNRFLKNLGVTFRRDPETGRPRV  571 (591)
T ss_pred             HHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEecCCCccCcCCCCccHHHHHHHHHHHcCcEEecCcccCCCCc
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCChhhHHHHHhCceeec
Q psy1687          85 NKNNSVKDCEQKRAGQYFFY  104 (107)
Q Consensus        85 ~~~~~~~~~~~k~~~~~~~~  104 (107)
                      |+.+|++|++||.+|.|||.
T Consensus       572 NK~gS~lDreQKe~g~Yyy~  591 (591)
T COG1245         572 NKPGSQLDREQKERGEYYYA  591 (591)
T ss_pred             CCCcchhhHHHHhccCcccC
Confidence            99999999999999999995

>PRK13409 putative ATPase RIL; Provisional

Probab=99.84  E-value=1.1e-20  Score=156.66  Aligned_cols=101  Identities=44%  Similarity=0.738  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhhhhhcCeeeeeCCCCCccee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLGITFRRDPNNFRPRI   84 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~~~~~~~~~~~i   84 (107)
                      .+++++|++++++.|+|+|+||||++++..+|||+++|+|+++..|.+.+|..+.+.+|.|++..+++|++|+.+++|++
T Consensus       490 ~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~~~~~~g~~~~~~~~~~~~~~~l~~~~i~~~~d~~~~~~~i  569 (590)
T PRK13409        490 LAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEGEPGKHGHASGPMDMREGMNRFLKELGITFRRDEETGRPRV  569 (590)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCcceeeeecCCchhHHHHHHHHHHHcCCEEEECCCCCCcCc
Confidence            57889999998777899999999999999999999999999988888888888999999999999999999999999999


Q ss_pred             eeCCChhhHHHHHhCceeecc
Q psy1687          85 NKNNSVKDCEQKRAGQYFFYE  105 (107)
Q Consensus        85 ~~~~~~~~~~~k~~~~~~~~~  105 (107)
                      ++.+|++|+|||++|.|||++
T Consensus       570 ~~~~s~~d~~q~~~~~~~~~~  590 (590)
T PRK13409        570 NKPGSYLDREQKERGEYYYAD  590 (590)
T ss_pred             CCCcchhhHHHHhcCCeeccC
Confidence            999999999999999999964

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.83  E-value=4e-20  Score=138.54  Aligned_cols=95  Identities=60%  Similarity=0.923  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhhhhhcCeeeeeCCCCCccee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLGITFRRDPNNFRPRI   84 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~~~~~~~~~~~i   84 (107)
                      ..+.++|++++++.++|+|+||||++++..+||++++|+|+++..|.+++|+.+.+.+|.|++..+++|++++.+++|++
T Consensus       152 ~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~  231 (246)
T cd03237         152 LMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLRSGMNRFLKNLDITFRRDPETGRPRI  231 (246)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHHHHHHHHHHHCCCEEecCcccCCCCC
Confidence            46788899988767899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCChhhHHHHHhC
Q psy1687          85 NKNNSVKDCEQKRAG   99 (107)
Q Consensus        85 ~~~~~~~~~~~k~~~   99 (107)
                      |+.+|++|++||++|
T Consensus       232 ~~~~~~~~~~~~~~~  246 (246)
T cd03237         232 NKLGSVKDREQKESG  246 (246)
T ss_pred             CCcchHHHHHHHhcC
Confidence            999999999999986

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.54  E-value=3.4e-14  Score=108.11  Aligned_cols=80  Identities=18%  Similarity=0.183  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee---ecCCchhHHHHHHhhhhhcCeeeeeCCCC
Q psy1687           4 LHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST---LANAPQNLLNGMNKFLSLLGITFRRDPNN   79 (107)
Q Consensus         4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g---~v~tp~~L~~~~~~~l~~~~i~~~~~~~~   79 (107)
                      -+++|++++++++++|+|+|+|+||+|.|.+|||++++|+ |++.++|   ++.|++.+.++|     +.++.+..++.+
T Consensus       174 Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~Vy-----gv~~~~~~~~~~  248 (258)
T COG1120         174 QIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVY-----GVDADVIEDPDS  248 (258)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHHHHHHh-----CCceEEEEcCCC
Confidence            3689999999998899999999999999999999999999 9999998   788888888888     777777777877


Q ss_pred             CcceeeeCC
Q psy1687          80 FRPRINKNN   88 (107)
Q Consensus        80 ~~~~i~~~~   88 (107)
                      +.|.+.+..
T Consensus       249 ~~p~~i~~~  257 (258)
T COG1120         249 GKPVVIPLG  257 (258)
T ss_pred             CceEEecCC
Confidence            777776643

>KOG0063|consensus

Probab=99.39  E-value=4.8e-13  Score=108.44  Aligned_cols=98  Identities=77%  Similarity=1.192  Sum_probs=89.1

Q ss_pred             HHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhhhhhcCeeeeeCCCCCcceeee
Q psy1687           7 TLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLGITFRRDPNNFRPRINK   86 (107)
Q Consensus         7 i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~~~~~~~~~~~i~~   86 (107)
                      ..+.++|+.-..++|-.+|.||+-.|..++||+++..|.+........|..|....|.|++..+++|++++.+.+|+++.
T Consensus       495 AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~gmN~fl~~l~itfRrd~n~~rprink  574 (592)
T KOG0063|consen  495 ASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLAGMNRFLKNLDITFRRDPNNFRPRINK  574 (592)
T ss_pred             HHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHHHhHHHHhhcceeeccCCcccccccch
Confidence            45677787666689999999999999999999999999887655667899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHhCceeec
Q psy1687          87 NNSVKDCEQKRAGQYFFY  104 (107)
Q Consensus        87 ~~~~~~~~~k~~~~~~~~  104 (107)
                      .+|++|++||++|.|||.
T Consensus       575 ~~s~~d~~qK~~g~~ffl  592 (592)
T KOG0063|consen  575 LDSQKDVEQKKSGQYFFL  592 (592)
T ss_pred             hhHHHHHHHhhcCCcccC
Confidence            999999999999999984

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.27  E-value=1.3e-11  Score=92.67  Aligned_cols=76  Identities=21%  Similarity=0.244  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee---ecCCchhHHHHHHhhhhhcCeeeeeCCCCC
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST---LANAPQNLLNGMNKFLSLLGITFRRDPNNF   80 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g---~v~tp~~L~~~~~~~l~~~~i~~~~~~~~~   80 (107)
                      +.++++.++++++ |..|+.|.||+|.|+.|||||++|. |++.+.|   ++.|+|.+..+|     +.++.+.++|...
T Consensus       178 ~~tl~laR~la~~-g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~Etl~~vy-----g~~~~V~~~P~~~  251 (259)
T COG4559         178 HHTLRLARQLARE-GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDETLERVY-----GADIRVGRHPARN  251 (259)
T ss_pred             HHHHHHHHHHHhc-CCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCHHHHHHHh-----CCceeeeeccCCC
Confidence            5689999999987 7899999999999999999999999 9999998   888888888888     8899999999888


Q ss_pred             cceeee
Q psy1687          81 RPRINK   86 (107)
Q Consensus        81 ~~~i~~   86 (107)
                      .|.+.+
T Consensus       252 ~P~V~~  257 (259)
T COG4559         252 IPLVLP  257 (259)
T ss_pred             CCeeee
Confidence            887765

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.21  E-value=2.4e-11  Score=90.55  Aligned_cols=64  Identities=22%  Similarity=0.246  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee---ecCCchhHHHHHHhhhhhcCeee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST---LANAPQNLLNGMNKFLSLLGITF   73 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g---~v~tp~~L~~~~~~~l~~~~i~~   73 (107)
                      -++|++|++++++.|+|+++|.||+|+|..|+|.|+.|+ |+++.+|   ++.+|+.|.+.|     .+++.+
T Consensus       172 v~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~~L~eiy-----dm~i~v  239 (252)
T COG4604         172 VQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEILSEIY-----DMDIPV  239 (252)
T ss_pred             HHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHHHHHHHh-----cCCcee
Confidence            478999999999999999999999999999999999999 9999986   555555555555     445554

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.15  E-value=7.3e-11  Score=90.58  Aligned_cols=62  Identities=27%  Similarity=0.339  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH-HHhhhhhc
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG-MNKFLSLL   69 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~-~~~~l~~~   69 (107)
                      ..+-+.++++.++.|+|+|+||||+++|..++|||.+|+ |++...   ++|+++... .|+|.+.+
T Consensus       172 ~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~---~~P~~il~~Pan~FV~~f  235 (309)
T COG1125         172 KQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQY---DTPDEILANPANDFVEDF  235 (309)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEe---CCHHHHHhCccHHHHHHH
Confidence            356788999999999999999999999999999999999 665544   799999886 67777765

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.02  E-value=5.1e-10  Score=88.10  Aligned_cols=53  Identities=21%  Similarity=0.277  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      ++-+.|.+|.++.++||||||||+++|.+++|||.+|+ |+++..   |||+++...
T Consensus       202 ~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~---Gtp~eIl~~  255 (386)
T COG4175         202 EMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQV---GTPEEILLN  255 (386)
T ss_pred             HHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEe---CCHHHHHcC
Confidence            57788888988889999999999999999999999999 665544   799998875

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.98  E-value=8.7e-10  Score=86.07  Aligned_cols=54  Identities=17%  Similarity=0.266  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      .+|+++|+++.++.|+|+|+||||+..++.+||||.||. |+++-.   |+.++++..
T Consensus       190 aqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~---g~~~~i~~~  244 (316)
T COG0444         190 AQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEE---GPVEEIFKN  244 (316)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEe---CCHHHHhcC
Confidence            478999999999899999999999999999999999999 877766   677777774

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.93  E-value=1.5e-09  Score=81.47  Aligned_cols=52  Identities=25%  Similarity=0.387  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      -|+++.+++|+++ |+|+++|||+|.+|...||||++|+ |+++.+   ++|++++.
T Consensus       173 ~EVL~vm~~LA~e-GmTMivVTHEM~FAr~VadrviFmd~G~iie~---g~p~~~f~  225 (240)
T COG1126         173 GEVLDVMKDLAEE-GMTMIIVTHEMGFAREVADRVIFMDQGKIIEE---GPPEEFFD  225 (240)
T ss_pred             HHHHHHHHHHHHc-CCeEEEEechhHHHHHhhheEEEeeCCEEEEe---cCHHHHhc
Confidence            5899999999876 9999999999999999999999999 656665   58888876

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.92  E-value=1.4e-09  Score=82.56  Aligned_cols=44  Identities=32%  Similarity=0.435  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcc
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSI   48 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~   48 (107)
                      ..+.+.|.+++++.++|+++||||+++|..+||||++|+++|+.
T Consensus       167 ~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~  210 (248)
T COG1116         167 EELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGR  210 (248)
T ss_pred             HHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcc
Confidence            46778899999999999999999999999999999999987844

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.92  E-value=2.3e-09  Score=81.22  Aligned_cols=54  Identities=22%  Similarity=0.369  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           4 LHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++.++|+++.++.|.||++|.|||+.+..+||||+||+ |+++++   |+|+++.+
T Consensus       185 ~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAe---G~P~eV~~  239 (250)
T COG0411         185 TEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAE---GTPEEVRN  239 (250)
T ss_pred             HHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCccc---CCHHHHhc
Confidence            3688999999988778999999999999999999999999 999999   58888765

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.91  E-value=1.9e-09  Score=81.92  Aligned_cols=56  Identities=23%  Similarity=0.281  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNGMN   63 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~~   63 (107)
                      -++-++|++|+++.|.|+++||||++.+..+|||++++. |++.+.   |+|+++.+.-+
T Consensus       182 ~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~---Gt~~el~~sd~  238 (263)
T COG1127         182 GVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAE---GTPEELLASDD  238 (263)
T ss_pred             HHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEe---CCHHHHHhCCC
Confidence            467889999999999999999999999999999999999 888998   69999988533

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.89  E-value=3.3e-09  Score=79.72  Aligned_cols=54  Identities=26%  Similarity=0.439  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      .++++++++|.++.|+|+|++|||++++..+|||+++|+ |+.+.+   |+|+++++.
T Consensus       175 ~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~---g~p~~i~~~  229 (235)
T COG1122         175 RELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILAD---GDPAEIFND  229 (235)
T ss_pred             HHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeec---CCHHHHhhh
Confidence            578999999988878999999999999999999999999 888888   478877663

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.88  E-value=4e-09  Score=80.31  Aligned_cols=52  Identities=25%  Similarity=0.321  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++ |+||++||||++.+..+||++++|+++..+.|   +|+++.+
T Consensus       176 ~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~Ln~~~~~~G---~~~~~~~  227 (254)
T COG1121         176 KEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICLNRHLIASG---PPEEVLT  227 (254)
T ss_pred             HHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEEcCeeEecc---ChhhccC
Confidence            5789999999888 99999999999999999999999998888886   4444443

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.87  E-value=1.1e-08  Score=73.67  Aligned_cols=69  Identities=42%  Similarity=0.662  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhhhhhcCeee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLGITF   73 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~   73 (107)
                      ..+.++|++++++.+.|+|+||||++++..+||++++|+++++..+-++.|....+..|.|+.++-..|
T Consensus       108 ~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (177)
T cd03222         108 LNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTREGINRFLRGYLITF  176 (177)
T ss_pred             HHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchhHHHHHHHHhhcccc
Confidence            356778888865535899999999999999999999999878887788999999999999998886655

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.83  E-value=5.8e-09  Score=86.32  Aligned_cols=54  Identities=20%  Similarity=0.316  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      .+|+++|+++.++.|+++|+||||+..++++|||++||. |+++-.   |+++++++.
T Consensus       191 ~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~---G~~~~i~~~  245 (539)
T COG1123         191 AQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVET---GPTEEILSN  245 (539)
T ss_pred             HHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEe---cCHHHHHhc
Confidence            479999999999999999999999999999999999999 776665   688888875

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.79  E-value=1.1e-08  Score=81.07  Aligned_cols=54  Identities=22%  Similarity=0.229  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      .++...|+++.++.|+|.|+||||-++|..+||||++|+ |++.   ++|+|+++.+.
T Consensus       173 ~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~---Q~gtP~eiY~~  227 (352)
T COG3842         173 EQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIE---QVGTPEEIYER  227 (352)
T ss_pred             HHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCcee---ecCCHHHHhhC
Confidence            356778899988899999999999999999999999999 6544   34899999885

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=98.76  E-value=1.7e-08  Score=78.49  Aligned_cols=53  Identities=17%  Similarity=0.333  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|+++.++.|+|+|+||||++++..+|||+++|+ |+++..   |+++++.+
T Consensus       195 ~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~---g~~~~i~~  248 (330)
T PRK15093        195 AQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET---APSKELVT  248 (330)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE---CCHHHHHh
Confidence            578899999987779999999999999999999999999 877766   46666654

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=98.75  E-value=1.9e-08  Score=78.30  Aligned_cols=53  Identities=9%  Similarity=0.258  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++.|.|+|+||||++++..+|||+++|+ |+++..   ++++++.+
T Consensus       190 ~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~---g~~~~~~~  243 (326)
T PRK11022        190 AQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET---GKAHDIFR  243 (326)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---CCHHHHhh
Confidence            468899999987779999999999999999999999999 877765   57777765

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.74  E-value=4.5e-08  Score=78.53  Aligned_cols=51  Identities=24%  Similarity=0.442  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      .+++++|+++++ .|+|||++|||++++..+|||+++|+ |++...   |+|+++.
T Consensus       176 ~~l~~lL~~l~~-~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~---G~~~ev~  227 (402)
T PRK09536        176 VRTLELVRRLVD-DGKTAVAAIHDLDLAARYCDELVLLADGRVRAA---GPPADVL  227 (402)
T ss_pred             HHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe---cCHHHHh
Confidence            578999999986 48999999999999999999999999 877776   4666643

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=98.72  E-value=2.7e-08  Score=77.60  Aligned_cols=53  Identities=11%  Similarity=0.230  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++.|.|+|+||||++.+..+|||+++|+ |+++..   |+++++.+
T Consensus       198 ~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~---g~~~~i~~  251 (330)
T PRK09473        198 AQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY---GNARDVFY  251 (330)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE---CCHHHHHh
Confidence            468899999987779999999999999999999999999 877766   57777765

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.72  E-value=2.7e-08  Score=75.52  Aligned_cols=54  Identities=19%  Similarity=0.233  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      ..+|+.|++++++.|+|+|+..|+++.|..||||++-|+ |+++..   |++.++.+.
T Consensus       184 ~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD---g~~~el~~~  238 (258)
T COG3638         184 KKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD---GPASELTDE  238 (258)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe---CChhhhhHH
Confidence            679999999999999999999999999999999999999 999998   477776653

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.71  E-value=2.8e-08  Score=77.87  Aligned_cols=54  Identities=22%  Similarity=0.259  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      -++-++|+++.++.|.|.|+||||.++|..+||||++|+ |++...   ++|+++.+.
T Consensus       174 ~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqv---g~p~ev~~~  228 (345)
T COG1118         174 KELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQV---GPPDEVYDH  228 (345)
T ss_pred             HHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeee---CCHHHHhcC
Confidence            367789999988889999999999999999999999999 765544   799998774

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.70  E-value=3e-08  Score=78.57  Aligned_cols=54  Identities=20%  Similarity=0.353  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      .++.+++++++++.|+|+|+||||+++|..+||||++|+ |++...   ++|+++...
T Consensus       166 ~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~---g~~~ei~~~  220 (363)
T TIGR01186       166 DSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQV---GTPDEILRN  220 (363)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEee---CCHHHHHhC
Confidence            467888888877779999999999999999999999999 766655   688887653

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=98.70  E-value=3.2e-08  Score=77.14  Aligned_cols=53  Identities=15%  Similarity=0.247  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++.|.|+|+||||++++..+||++++|+ |+++..   |+++++.+
T Consensus       191 ~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~---g~~~~~~~  244 (327)
T PRK11308        191 AQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEK---GTKEQIFN  244 (327)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---CCHHHHhc
Confidence            478899999988779999999999999999999999999 877765   56676655

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=98.70  E-value=3.5e-08  Score=77.07  Aligned_cols=53  Identities=15%  Similarity=0.262  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|+++.++.|.|+|+||||++++..+|||+++|+ |+++..   ++++++.+
T Consensus       198 ~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~---g~~~~i~~  251 (331)
T PRK15079        198 AQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVEL---GTYDEVYH  251 (331)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHc
Confidence            478899999987779999999999999999999999999 877666   56666654

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.68  E-value=4.2e-08  Score=77.29  Aligned_cols=53  Identities=23%  Similarity=0.295  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++.+.|+++.++.|.|+|+||||+++|..+|||+++|+ |++...   |+|+++.+
T Consensus       171 ~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~---g~~~~~~~  224 (353)
T TIGR03265       171 EHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQV---GTPQEIYR  224 (353)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence            467888999987779999999999999999999999999 877665   68888875

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.68  E-value=2.6e-08  Score=78.07  Aligned_cols=53  Identities=17%  Similarity=0.254  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..|+++|++++++.|.||++|||.|+.+..+|||+.||+ |+++-.|   +..+++.
T Consensus       178 ~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G---~v~~vF~  231 (339)
T COG1135         178 QSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEG---TVSEVFA  231 (339)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEec---cHHHhhc
Confidence            478999999999999999999999999999999999999 8888775   4444443

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.68  E-value=4.4e-08  Score=77.14  Aligned_cols=53  Identities=23%  Similarity=0.285  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++.++|+++.++.|+|+|+||||+++|..+|||+++|+ |++...   ++|+++.+
T Consensus       173 ~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~---g~~~~i~~  226 (353)
T PRK10851        173 KELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQA---GTPDQVWR  226 (353)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence            467889999987779999999999999999999999999 776655   68888765

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=98.68  E-value=3.9e-08  Score=77.32  Aligned_cols=53  Identities=15%  Similarity=0.220  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++.|+|||+||||++.+..+||++++|+ |++...   |++++++.
T Consensus       177 ~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~---g~~~~v~~  230 (343)
T TIGR02314       177 QSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ---GTVSEIFS  230 (343)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHc
Confidence            478899999988779999999999999999999999999 877766   46666653

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.68  E-value=4.5e-08  Score=77.46  Aligned_cols=54  Identities=22%  Similarity=0.191  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHhhc-CcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           5 HLTLQVIKRFILHA-KKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         5 ~~i~~ll~~l~~~~-~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      .++.+.|+++.++. |+|+|+||||+++|..+|||+++|+ |++...   ++|+++.+.
T Consensus       174 ~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~---g~~~~~~~~  229 (362)
T TIGR03258       174 ANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAH---GEPQALYDA  229 (362)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHhC
Confidence            46788888988765 8999999999999999999999999 777665   688888763

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=98.67  E-value=9.9e-08  Score=72.00  Aligned_cols=63  Identities=27%  Similarity=0.453  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhhhhh
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSL   68 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~l~~   68 (107)
                      ..+.++|+++.++ ++|+|++|||++++..+||++++|+|++++.|-++.|.......|.+...
T Consensus       176 ~~l~~~l~~l~~~-~~tIIiiSHd~~~~~~~ad~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (255)
T cd03236         176 LNAARLIRELAED-DNYVLVVEHDLAVLDYLSDYIHCLYGEPGAYGVVTLPKSVREGINEFLDG  238 (255)
T ss_pred             HHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEECCCCCcceeeecCccHHHHHHHHHhc
Confidence            3577888888754 89999999999999999999999999999999999999988665555533

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.67  E-value=4.9e-08  Score=76.97  Aligned_cols=53  Identities=28%  Similarity=0.359  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++.+.|+++.++.|+|+|+||||+++|..+||++++|+ |++...   |+|+++.+
T Consensus       171 ~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~---g~~~~~~~  224 (356)
T PRK11650        171 VQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQI---GTPVEVYE  224 (356)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEE---CCHHHHHh
Confidence            467888999887779999999999999999999999999 766655   68888865

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.66  E-value=5.5e-08  Score=74.16  Aligned_cols=53  Identities=25%  Similarity=0.367  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++.|.|||+||||++++..+|||+++|+ |++...   ++++++.+
T Consensus       181 ~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~---g~~~~~~~  234 (287)
T PRK13637        181 DEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQ---GTPREVFK  234 (287)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---CCHHHHHh
Confidence            578889999977668999999999999999999999998 877766   57777654

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.66  E-value=3.4e-08  Score=74.95  Aligned_cols=53  Identities=19%  Similarity=0.308  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      -+|+++|.++.++.|.|+|+||||+..+..+|||++||+ |+.+-.   ++.+++.+
T Consensus       178 a~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~---~~~~~l~~  231 (252)
T COG1124         178 AQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEI---GPTEELLS  231 (252)
T ss_pred             HHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEe---echhhhhc
Confidence            368999999999999999999999999999999999999 776665   34444443

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.65  E-value=5.5e-08  Score=76.60  Aligned_cols=53  Identities=28%  Similarity=0.292  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++.+.|+++.++.|+|+|+||||++++..+|||+++|+ |++...   ++|+++.+
T Consensus       173 ~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~---g~~~~~~~  226 (351)
T PRK11432        173 RSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQI---GSPQELYR  226 (351)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence            467788888887779999999999999999999999999 776655   68888765

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.64  E-value=5.1e-08  Score=80.82  Aligned_cols=54  Identities=20%  Similarity=0.342  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      -.++++|+++.++.|.|+++||||+.++..+||||++|. |+++-.   |+.+.+++.
T Consensus       466 a~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~---G~~~~v~~~  520 (539)
T COG1123         466 AQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEE---GPTEKVFEN  520 (539)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEe---CCHHHHhcC
Confidence            468999999999999999999999999999999999999 887776   577777663

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.63  E-value=7.1e-08  Score=73.64  Aligned_cols=53  Identities=15%  Similarity=0.319  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++.|.|||++|||++++..+|||+++|+ |++...   ++++++.+
T Consensus       182 ~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~---g~~~~~~~  235 (290)
T PRK13634        182 KEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQ---GTPREIFA  235 (290)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---CCHHHHhc
Confidence            467888999977679999999999999999999999999 877766   46666654

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=98.63  E-value=7.6e-08  Score=76.85  Aligned_cols=53  Identities=19%  Similarity=0.251  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++.++|++++++.++|+|+||||++++..+|||+++|+ |+++..   ++++++..
T Consensus       201 ~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~---g~~~ei~~  254 (382)
T TIGR03415       201 TQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQH---GTPEEIVL  254 (382)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---cCHHHHhh
Confidence            468888999977679999999999999999999999999 776665   67877754

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=98.60  E-value=8.8e-08  Score=76.15  Aligned_cols=53  Identities=23%  Similarity=0.265  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++.+.|+++.++.|+|+|+||||+++|..+||++++|+ |++...   ++|+++.+
T Consensus       181 ~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~---g~~~~i~~  234 (375)
T PRK09452        181 KQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQD---GTPREIYE  234 (375)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence            467888999987779999999999999999999999999 766655   68888765

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.60  E-value=9.3e-08  Score=73.73  Aligned_cols=52  Identities=29%  Similarity=0.411  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++.++|+++++ .|+|||++||+++++..+|||+++|+ |++...   ++++++.+
T Consensus       175 ~~l~~~l~~l~~-~g~till~sH~l~e~~~~~d~i~il~~G~i~~~---g~~~~l~~  227 (306)
T PRK13537        175 HLMWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVIEEGRKIAE---GAPHALIE  227 (306)
T ss_pred             HHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE---CCHHHHHh
Confidence            467888999865 49999999999999999999999999 888776   57777754

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.60  E-value=7.9e-08  Score=70.69  Aligned_cols=52  Identities=23%  Similarity=0.307  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..++++|++++++.|+|||+||||++++..+||++++|+ |++...   ++++++.
T Consensus       173 ~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~---g~~~~~~  225 (235)
T cd03261         173 GVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAE---GTPEELR  225 (235)
T ss_pred             HHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEe---cCHHHHc
Confidence            467888988876568999999999999999999999998 776655   4555543

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.60  E-value=9.3e-08  Score=72.93  Aligned_cols=52  Identities=17%  Similarity=0.195  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|++++++ |.|||++|||++++..+|||+++|+ |++...   ++|+++++
T Consensus       181 ~~l~~~l~~l~~~-g~til~vtHd~~~~~~~~dri~~l~~G~i~~~---g~~~~~~~  233 (288)
T PRK13643        181 IEMMQLFESIHQS-GQTVVLVTHLMDDVADYADYVYLLEKGHIISC---GTPSDVFQ  233 (288)
T ss_pred             HHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEE---CCHHHHHc
Confidence            4677888888754 8999999999999999999999999 777766   57887765

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=1.1e-07  Score=72.29  Aligned_cols=53  Identities=26%  Similarity=0.421  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++.|+|||+||||++++..+|||+++|+ |++...   ++++++..
T Consensus       182 ~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~---g~~~~~~~  235 (286)
T PRK13646        182 RQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQ---TSPKELFK  235 (286)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE---CCHHHHHh
Confidence            467888999876668999999999999999999999999 877766   57777655

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=98.58  E-value=1.2e-07  Score=75.40  Aligned_cols=53  Identities=15%  Similarity=0.193  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++.+.|+++.++.|.|+|+||||+++|..+|||+++|+ |++...   ++|+++.+
T Consensus       186 ~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~---g~~~~~~~  239 (377)
T PRK11607        186 DRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQI---GEPEEIYE  239 (377)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEE---cCHHHHHh
Confidence            356677888877779999999999999999999999999 766655   68888765

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=98.58  E-value=1.3e-07  Score=73.46  Aligned_cols=53  Identities=21%  Similarity=0.218  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|++++++.|+|+|+||||++++..+||++++|+ |++...   ++|+++.+
T Consensus       137 ~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~---g~~~~~~~  190 (325)
T TIGR01187       137 DQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQI---GTPEEIYE  190 (325)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence            467888888887779999999999999999999999999 776655   57777765

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=98.55  E-value=1.3e-07  Score=73.04  Aligned_cols=52  Identities=21%  Similarity=0.265  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|+++++ .|+|||+||||++++..+|||+++|+ |++...   ++++++.+
T Consensus       202 ~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~---g~~~~~~~  254 (305)
T PRK13651        202 KEILEIFDNLNK-QGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKD---GDTYDILS  254 (305)
T ss_pred             HHHHHHHHHHHH-CCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEE---CCHHHHhc
Confidence            467888888875 49999999999999999999999999 877666   57777655

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.55  E-value=1.6e-07  Score=73.74  Aligned_cols=52  Identities=27%  Similarity=0.407  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++.++|+++++ .|+|||++|||++++..+||++++|+ |++...   ++++++.+
T Consensus       209 ~~l~~~l~~l~~-~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~---g~~~~l~~  261 (340)
T PRK13536        209 HLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVLEAGRKIAE---GRPHALID  261 (340)
T ss_pred             HHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence            578889999876 49999999999999999999999998 888877   57777754

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=98.55  E-value=1.8e-07  Score=71.93  Aligned_cols=56  Identities=20%  Similarity=0.262  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHHH
Q psy1687           4 LHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNGM   62 (107)
Q Consensus         4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~   62 (107)
                      -.++.++|++++++.|.||+++||.++++..+||||++|+ |+.++.   ++++++.+.+
T Consensus       172 ~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~---g~~~~l~~~~  228 (293)
T COG1131         172 RREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAE---GTPEELKEKF  228 (293)
T ss_pred             HHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEe---CCHHHHHHhh
Confidence            3678999999988755899999999999999999999999 888887   5888876643

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.54  E-value=1.8e-07  Score=70.79  Aligned_cols=53  Identities=9%  Similarity=0.130  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|++++++.|.|+|++|||++++..+|||+++|+ |+....   ++++++.+
T Consensus       174 ~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~---g~~~~~~~  227 (277)
T PRK13652        174 KELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAY---GTVEEIFL  227 (277)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEE---CCHHHHhc
Confidence            467888988877668999999999999999999999998 877766   57777765

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.54  E-value=1.8e-07  Score=74.00  Aligned_cols=53  Identities=25%  Similarity=0.318  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++.++|+++.++.|.|+|+||||++++..+||++++|+ |++...   ++|+++.+
T Consensus       170 ~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~---g~~~~i~~  223 (369)
T PRK11000        170 VQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV---GKPLELYH  223 (369)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence            467788888877679999999999999999999999999 766655   67887765

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=98.54  E-value=2.1e-07  Score=68.36  Aligned_cols=52  Identities=21%  Similarity=0.298  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|++++++.|+|||++|||++++..+||++++|+ |++...   ++++++.
T Consensus       181 ~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~---~~~~~~~  233 (241)
T cd03256         181 RQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFD---GPPAELT  233 (241)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee---cCHHHhh
Confidence            467888888876668999999999999999999999998 776655   5666653

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.54  E-value=1.5e-07  Score=78.62  Aligned_cols=53  Identities=13%  Similarity=0.176  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++.|.|||+||||++++..+|||+++|+ |+++..   ++++++.+
T Consensus       500 ~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~---g~~~~i~~  553 (623)
T PRK10261        500 GQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEI---GPRRAVFE  553 (623)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---cCHHHHhc
Confidence            468899999987779999999999999999999999998 877665   57777654

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.54  E-value=1.8e-07  Score=71.16  Aligned_cols=53  Identities=15%  Similarity=0.287  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|++++++.|.|||++|||++++..+|||+++|+ |++...   |+++++.+
T Consensus       178 ~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~---g~~~~~~~  231 (283)
T PRK13636        178 SEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQ---GNPKEVFA  231 (283)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe---CCHHHHhc
Confidence            357888999977668999999999999999999999998 877766   57777655

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.53  E-value=1.3e-07  Score=76.79  Aligned_cols=54  Identities=19%  Similarity=0.303  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      .+|+++|++|.++.|++++++|||+..+..+||||.||. |+++-+   ++.+.+++.
T Consensus       194 aQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~---~~t~~lF~~  248 (534)
T COG4172         194 AQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVET---GTTETLFAA  248 (534)
T ss_pred             HHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeec---CcHHHHhhC
Confidence            478999999999999999999999999999999999999 887766   567777764

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=98.53  E-value=2.1e-07  Score=73.05  Aligned_cols=54  Identities=20%  Similarity=0.234  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      ..++++|++++++.|+|+|+||||++++..+||++++|+ |++...   ++|+++.+.
T Consensus       165 ~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~---g~~~~i~~~  219 (352)
T PRK11144        165 RELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAF---GPLEEVWAS  219 (352)
T ss_pred             HHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEe---cCHHHHHhC
Confidence            467888999887668999999999999999999999999 776665   577777653

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.51  E-value=2.4e-07  Score=70.17  Aligned_cols=50  Identities=26%  Similarity=0.337  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNL   58 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L   58 (107)
                      .+++++|++++++ |.|||++|||++++..+|||+++|+ |++...   ++++.+
T Consensus       175 ~~l~~~l~~~~~~-g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~  225 (274)
T PRK13647        175 ETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAE---GDKSLL  225 (274)
T ss_pred             HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---CCHHHh
Confidence            5688999999765 8999999999999999999999999 776665   455543

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=98.51  E-value=2.1e-07  Score=69.72  Aligned_cols=54  Identities=20%  Similarity=0.177  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           4 LHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      ...+.+.++++.. .|++||++||+|+++..+|||+++++ |+++..   |+++.+.+.
T Consensus       169 ~r~~~dfi~q~k~-egr~viFSSH~m~EvealCDrvivlh~Gevv~~---gs~~~l~~r  223 (245)
T COG4555         169 RRKFHDFIKQLKN-EGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLE---GSIEALDAR  223 (245)
T ss_pred             HHHHHHHHHHhhc-CCcEEEEecccHHHHHHhhheEEEEecCcEEEc---CCHHHHHHH
Confidence            3456778888855 49999999999999999999999999 988887   588877764

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.51  E-value=2.2e-07  Score=77.67  Aligned_cols=52  Identities=21%  Similarity=0.308  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      .+++++|++++++.|+|||+||||++++..+||||++|+ |+++..   ++++++.
T Consensus       205 ~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~---g~~~~~~  257 (623)
T PRK10261        205 AQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVET---GSVEQIF  257 (623)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeeccc---CCHHHhh
Confidence            468899999987679999999999999999999999998 877765   4666654

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.50  E-value=1.9e-07  Score=71.64  Aligned_cols=53  Identities=21%  Similarity=0.330  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|+++.++.|.|.+++|||+..+..+|||++||. |+++-.   ++.+++++
T Consensus       146 aqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~---g~~~~~~~  199 (268)
T COG4608         146 AQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEI---GPTEEVFS  199 (268)
T ss_pred             HHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEe---cCHHHHhh
Confidence            468999999999999999999999999999999999999 888776   56666666

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.50  E-value=2.7e-07  Score=72.24  Aligned_cols=53  Identities=17%  Similarity=0.254  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|++++++.|+|+|++|||++++..+||++++|+ |++...   ++++++..
T Consensus       177 ~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~---g~~~~~~~  230 (343)
T PRK11153        177 RSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQ---GTVSEVFS  230 (343)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence            468889999987678999999999999999999999999 777665   46666643

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=98.50  E-value=4.4e-07  Score=67.62  Aligned_cols=51  Identities=16%  Similarity=0.174  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|++++++ |+|+|++|||++++..+||++++|+ |++...   ++++++.
T Consensus       170 ~~l~~~L~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~  221 (248)
T PRK03695        170 AALDRLLSELCQQ-GIAVVMSSHDLNHTLRHADRVWLLKQGKLLAS---GRRDEVL  221 (248)
T ss_pred             HHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEE---CCHHHHh
Confidence            4678888888654 8999999999999999999999998 777665   4555553

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.49  E-value=2.6e-07  Score=71.83  Aligned_cols=52  Identities=27%  Similarity=0.383  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|+++++ .|.|||+||||++++..+|||+++|+ |++...   |+++++++
T Consensus       213 ~~l~~~L~~l~~-~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~---g~~~~~~~  265 (320)
T PRK13631        213 HEMMQLILDAKA-NNKTVFVITHTMEHVLEVADEVIVMDKGKILKT---GTPYEIFT  265 (320)
T ss_pred             HHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe---CCHHHHhc
Confidence            467888888865 48999999999999999999999999 877766   57777755

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=98.49  E-value=2.5e-07  Score=73.05  Aligned_cols=53  Identities=28%  Similarity=0.375  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      ++...|+++.++.|.|+|.||||..+|..++|||++|+ |++.   |+|+|.++.+.
T Consensus       171 ~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~---Q~g~p~ely~~  224 (338)
T COG3839         171 LMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQ---QVGTPLELYER  224 (338)
T ss_pred             HHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeee---ecCChHHHhhC
Confidence            56678889988889999999999999999999999999 5444   45899999874

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=98.49  E-value=3e-07  Score=70.47  Aligned_cols=53  Identities=19%  Similarity=0.236  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      ..+.++|++++++ |+|||++|||++++..+||++++|+ |++...   ++++++.+.
T Consensus       161 ~~l~~~l~~~~~~-g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~---g~~~~l~~~  214 (302)
T TIGR01188       161 RAIWDYIRALKEE-GVTILLTTHYMEEADKLCDRIAIIDHGRIIAE---GTPEELKRR  214 (302)
T ss_pred             HHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEE---CCHHHHHHh
Confidence            4678888888754 8999999999999999999999998 877766   577777653

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=98.49  E-value=9.5e-08  Score=70.65  Aligned_cols=71  Identities=17%  Similarity=0.169  Sum_probs=59.5

Q ss_pred             HHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee---ecCCchhHHHHHHhhhhhcCeeeeeCCCCCcc
Q psy1687           7 TLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST---LANAPQNLLNGMNKFLSLLGITFRRDPNNFRP   82 (107)
Q Consensus         7 i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g---~v~tp~~L~~~~~~~l~~~~i~~~~~~~~~~~   82 (107)
                      +-++|.+++++ |.+|||+.||+|-..+-||++++++ |+..+.|   ||.+|+.|..+|       +++|++....+.|
T Consensus       171 Ldrll~~~c~~-G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~~vL~q~f-------g~~frr~~~eghp  242 (248)
T COG4138         171 LDRLLSALCQQ-GLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQAY-------GMNFRRLDIEGHP  242 (248)
T ss_pred             HHHHHHHHHhC-CcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcChHHHHHHh-------ccceEEEeecCCc
Confidence            44677788765 9999999999999999999999999 9988888   899999988855       6677777766666


Q ss_pred             eee
Q psy1687          83 RIN   85 (107)
Q Consensus        83 ~i~   85 (107)
                      .+.
T Consensus       243 ~l~  245 (248)
T COG4138         243 MLI  245 (248)
T ss_pred             eee
Confidence            553

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=98.49  E-value=2.6e-07  Score=68.46  Aligned_cols=46  Identities=22%  Similarity=0.259  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST   50 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g   50 (107)
                      .|++.++.+++++++.|++||||.++.|..++||+++++ |++.++|
T Consensus       166 ~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g  212 (231)
T COG3840         166 AEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQG  212 (231)
T ss_pred             HHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeec
Confidence            589999999999999999999999999999999999999 9888875

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.49  E-value=3.2e-07  Score=67.72  Aligned_cols=52  Identities=23%  Similarity=0.271  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|++++++.|+|+|+||||++++..+||++++|+ |++...   ++++++.
T Consensus       173 ~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~  225 (239)
T cd03296         173 KELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV---GTPDEVY  225 (239)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe---cCHHHHh
Confidence            467888888876668999999999999999999999998 776655   4666554

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.48  E-value=2.6e-07  Score=75.51  Aligned_cols=52  Identities=17%  Similarity=0.267  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      .+++++|++++++.|+|||+||||++++..+||++++|+ |++...   ++++++.
T Consensus       462 ~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~  514 (529)
T PRK15134        462 AQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQ---GDCERVF  514 (529)
T ss_pred             HHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEE---cCHHHHh
Confidence            568899999987668999999999999999999999998 877665   4666654

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=98.47  E-value=3.6e-07  Score=71.75  Aligned_cols=53  Identities=21%  Similarity=0.232  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++.|+|+|+||||++++..+||++++|+ |++...   ++++++.+
T Consensus       168 ~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~  221 (354)
T TIGR02142       168 YEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAA---GPIAEVWA  221 (354)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEE---CCHHHHhc
Confidence            467889999977668999999999999999999999999 776655   57777654

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.47  E-value=3.3e-07  Score=73.54  Aligned_cols=53  Identities=19%  Similarity=0.330  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++.++|++++++.|+|+|+||||++++..+||++++|+ |++...   ++++++..
T Consensus       201 ~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~---g~~~~l~~  254 (400)
T PRK10070        201 TEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQV---GTPDEILN  254 (400)
T ss_pred             HHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEec---CCHHHHHh
Confidence            467888988876668999999999999999999999999 766655   57777654

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.46  E-value=4.4e-07  Score=67.21  Aligned_cols=52  Identities=12%  Similarity=0.132  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|++++++.|.|+|++|||++++..+||++++|+ |++...   ++++++.
T Consensus       168 ~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~  220 (241)
T PRK14250        168 EIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEY---AKTYDFF  220 (241)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEe---CCHHHHh
Confidence            467788888876568999999999999999999999999 766554   5666654

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=98.46  E-value=3.7e-07  Score=67.23  Aligned_cols=51  Identities=22%  Similarity=0.307  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNL   58 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L   58 (107)
                      ..+.++|++++++.|+|+|+||||++++..+||++++|+ |+....   ++++++
T Consensus       182 ~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~---~~~~~~  233 (243)
T TIGR02315       182 KQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFD---GAPSEL  233 (243)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec---CCHHHh
Confidence            467888888876668999999999999999999999998 766654   466655

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.46  E-value=3.9e-07  Score=69.40  Aligned_cols=52  Identities=23%  Similarity=0.355  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++.++|+++++ .|.|||++|||++++..+||++++|+ |++...   ++++++.+
T Consensus       182 ~~l~~~l~~l~~-~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~---g~~~~~~~  234 (287)
T PRK13641        182 KEMMQLFKDYQK-AGHTVILVTHNMDDVAEYADDVLVLEHGKLIKH---ASPKEIFS  234 (287)
T ss_pred             HHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHhc
Confidence            467888888865 48999999999999999999999999 777666   56776654

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=98.45  E-value=5.1e-07  Score=66.34  Aligned_cols=53  Identities=13%  Similarity=0.235  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|++++++.|+|||++|||++++..+||++++|+ |++...   ++++++..
T Consensus       162 ~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~~  215 (230)
T TIGR02770       162 ARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVER---GTVKEIFY  215 (230)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHHh
Confidence            457788888876568999999999999999999999999 777665   46666643

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.44  E-value=4.5e-07  Score=68.80  Aligned_cols=52  Identities=27%  Similarity=0.358  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++.|+|||+||||++++ .+|||+++|+ |+....   ++++++.+
T Consensus       177 ~~l~~~l~~l~~~~g~tilivtH~~~~~-~~~dri~~l~~G~i~~~---g~~~~~~~  229 (279)
T PRK13650        177 LELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVEST---STPRELFS  229 (279)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEEEE---CCHHHHHc
Confidence            4678899999876699999999999999 5899999998 776665   56766654

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.44  E-value=4.5e-07  Score=66.74  Aligned_cols=52  Identities=27%  Similarity=0.321  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|++++++ |.|+|++|||++++..+|||+++|+ |++...   ++++++.+
T Consensus       174 ~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~~  226 (237)
T PRK11614        174 QQIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGYVLENGHVVLE---DTGDALLA  226 (237)
T ss_pred             HHHHHHHHHHHHC-CCEEEEEeCcHHHHHhhCCEEEEEeCCEEEee---CCHHHHhc
Confidence            4677888888654 8999999999999999999999998 877666   57776653

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.44  E-value=4e-07  Score=68.41  Aligned_cols=53  Identities=17%  Similarity=0.301  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|++++++.|+|||+||||++++..+||++++|+ |++...   ++++++..
T Consensus       187 ~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~  240 (265)
T TIGR02769       187 AVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE---CDVAQLLS  240 (265)
T ss_pred             HHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE---CCHHHHcC
Confidence            457888998876668999999999999999999999999 766655   56666654

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.44  E-value=4.4e-07  Score=68.14  Aligned_cols=40  Identities=30%  Similarity=0.414  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CC
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GS   45 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~   45 (107)
                      .++++++++++++.|+|+|+||||...|. +|||++.|. |+
T Consensus       179 ~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~  219 (226)
T COG1136         179 KEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGK  219 (226)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCe
Confidence            57999999999988999999999999995 899999998 65

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.44  E-value=5.7e-07  Score=66.76  Aligned_cols=53  Identities=25%  Similarity=0.404  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|++++++.|.|||++|||++++..+||++++|+ |++...   ++++++.+
T Consensus       190 ~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~---~~~~~~~~  243 (255)
T PRK11300        190 KELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLAN---GTPEEIRN  243 (255)
T ss_pred             HHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEec---CCHHHHhh
Confidence            467788888876568999999999999999999999999 776655   46666543

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.44  E-value=4.6e-07  Score=66.46  Aligned_cols=50  Identities=26%  Similarity=0.376  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNL   58 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L   58 (107)
                      ..+.++|+++++ .|+|+|+||||++++..+||++++|+ |++...   ++++++
T Consensus       180 ~~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~  230 (236)
T cd03219         180 EELAELIRELRE-RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAE---GTPDEV  230 (236)
T ss_pred             HHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEee---cCHHHh
Confidence            567888888876 58999999999999999999999998 766554   466554

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.44  E-value=4.7e-07  Score=68.25  Aligned_cols=53  Identities=17%  Similarity=0.154  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++.|.|+|+||||++++..+||++++|+ |++...   ++++++.+
T Consensus       180 ~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~---g~~~~~~~  233 (269)
T PRK11831        180 GVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAH---GSAQALQA  233 (269)
T ss_pred             HHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEe---CCHHHHhc
Confidence            467888998876668999999999999999999999998 776665   46666553

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.44  E-value=5.1e-07  Score=66.18  Aligned_cols=51  Identities=18%  Similarity=0.266  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNL   58 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L   58 (107)
                      ..+.++|++++++.|+|+|++|||++++..+||++++|+ |++...   ++++++
T Consensus       177 ~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~  228 (233)
T cd03258         177 QSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEE---GTVEEV  228 (233)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---cCHHHH
Confidence            467788888876668999999999999999999999998 776655   455544

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.44  E-value=4.4e-07  Score=69.63  Aligned_cols=52  Identities=27%  Similarity=0.407  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++.++|+++++ .|.|||++|||++++..+||++++|+ |++...   ++++++.+
T Consensus       172 ~~l~~~l~~~~~-~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~  224 (303)
T TIGR01288       172 HLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVLESGRKIAE---GRPHALID  224 (303)
T ss_pred             HHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence            467888888865 48999999999999999999999998 877666   57777654

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.44  E-value=1.2e-06  Score=66.48  Aligned_cols=52  Identities=23%  Similarity=0.355  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|+++.++.|+|+|+||||++++..+||++++|+ |++...   ++++++.
T Consensus       191 ~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~  243 (272)
T PRK13547        191 HRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAH---GAPADVL  243 (272)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEe---cCHHHHc
Confidence            567888998876668999999999999999999999998 777666   4555553

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.44  E-value=5e-07  Score=68.71  Aligned_cols=53  Identities=21%  Similarity=0.289  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|+++.++.|+|||+||||++++..+||++++|+ |++...   ++++++.+
T Consensus       187 ~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~  240 (289)
T PRK13645        187 EDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI---GSPFEIFS  240 (289)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe---CCHHHHhc
Confidence            467788888876668999999999999999999999999 776655   46666644

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.43  E-value=5e-07  Score=65.82  Aligned_cols=45  Identities=20%  Similarity=0.183  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcce
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIS   49 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~   49 (107)
                      ..+.++|+++.++.|+|+|++|||++++..+||++++|+ |++...
T Consensus       168 ~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~  213 (220)
T cd03265         168 AHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAE  213 (220)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence            457788888876668999999999999999999999999 766554

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.43  E-value=5.1e-07  Score=67.67  Aligned_cols=53  Identities=23%  Similarity=0.417  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|++++++.|.|||++|||++++..+||++++|+ |++...   ++++++.+
T Consensus       177 ~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~~  230 (258)
T PRK13548        177 HHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVAD---GTPAEVLT  230 (258)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEee---CCHHHHhC
Confidence            467888998874568999999999999999999999998 766655   46666543

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.43  E-value=6.8e-07  Score=65.24  Aligned_cols=45  Identities=16%  Similarity=0.139  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST   50 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g   50 (107)
                      ..++++|+++++ .|.|+|++|||++++..+||++++|+ |++...|
T Consensus       161 ~~l~~~L~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~  206 (223)
T TIGR03740       161 QELRELIRSFPE-QGITVILSSHILSEVQQLADHIGIISEGVLGYQG  206 (223)
T ss_pred             HHHHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEec
Confidence            467888888865 48999999999999999999999998 7766665

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.43  E-value=5.1e-07  Score=73.63  Aligned_cols=53  Identities=17%  Similarity=0.209  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++.|+|||+||||++++..+|||+++|+ |++...   ++++++.+
T Consensus       464 ~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~  517 (520)
T TIGR03269       464 VDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKI---GDPEEIVE  517 (520)
T ss_pred             HHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---CCHHHHHh
Confidence            468889999977678999999999999999999999998 776655   56666644

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.43  E-value=4.8e-07  Score=68.46  Aligned_cols=52  Identities=15%  Similarity=0.263  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|++++++ |.|||+||||++++..+||++++|+ |+....   ++++++.+
T Consensus       174 ~~l~~~l~~l~~~-~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~  226 (275)
T PRK13639        174 SQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKE---GTPKEVFS  226 (275)
T ss_pred             HHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEe---CCHHHHhc
Confidence            4678888888764 8999999999999999999999998 777666   57777654

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.43  E-value=4.2e-07  Score=74.30  Aligned_cols=52  Identities=21%  Similarity=0.323  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      .+++++|++++++.|+|||+||||++++..+|||+++|+ |++...   ++++++.
T Consensus       193 ~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~---g~~~~~~  245 (529)
T PRK15134        193 AQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQ---NRAATLF  245 (529)
T ss_pred             HHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEe---CCHHHHh
Confidence            467889999977668999999999999999999999999 776655   4565553

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.43  E-value=6.1e-07  Score=67.71  Aligned_cols=53  Identities=23%  Similarity=0.322  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++.++|++++++.|+|+|++|||++++..+||++++|+ |++...   ++++++.+
T Consensus       197 ~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~---g~~~~~~~  250 (269)
T cd03294         197 REMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQV---GTPEEILT  250 (269)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe---CCHHHHHh
Confidence            467888888876668999999999999999999999999 766655   56766654

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=98.42  E-value=6.7e-07  Score=65.73  Aligned_cols=53  Identities=19%  Similarity=0.269  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|++++++.|.|+|++|||++++..+||++++|+ |++...   ++++++.+
T Consensus       166 ~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~---g~~~~~~~  219 (232)
T PRK10771        166 QEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWD---GPTDELLS  219 (232)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe---CCHHHHHh
Confidence            457788888876668999999999999999999999998 776655   56666554

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.42  E-value=5.1e-07  Score=65.31  Aligned_cols=43  Identities=23%  Similarity=0.278  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS   47 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~   47 (107)
                      ..++++|++++++.|.|+|++|||++++..+||++++|+ |++.
T Consensus       165 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~  208 (211)
T cd03298         165 AEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA  208 (211)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEe
Confidence            567888998876668999999999999999999999999 6544

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=98.41  E-value=6e-07  Score=65.70  Aligned_cols=51  Identities=29%  Similarity=0.280  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNL   58 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L   58 (107)
                      .++.++|++++++.|.|+|++|||++++..+||++++|+ |+....   ++++++
T Consensus       168 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~---~~~~~~  219 (230)
T TIGR03410       168 KDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVAS---GAGDEL  219 (230)
T ss_pred             HHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---CCHHHc
Confidence            467888888876568999999999999999999999999 776655   455555

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.41  E-value=5.5e-07  Score=65.09  Aligned_cols=44  Identities=25%  Similarity=0.280  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI   48 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~   48 (107)
                      ..++++|++++++.|+|+|++|||++++..+||++++|+ |+...
T Consensus       167 ~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~  211 (213)
T cd03301         167 VQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ  211 (213)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence            467889999877668999999999999999999999998 65544

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.41  E-value=7.3e-07  Score=67.74  Aligned_cols=55  Identities=24%  Similarity=0.382  Sum_probs=44.9

Q ss_pred             HHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHHHHhhh
Q psy1687           8 LQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNGMNKFL   66 (107)
Q Consensus         8 ~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~~~~l   66 (107)
                      .+.+.++.+ .++|+|+||||++.+..+|||++.|+ |++...   |+|+++.+.|+...
T Consensus       187 ~~rl~e~~~-~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~---G~~~~vi~~Y~~~~  242 (249)
T COG1134         187 LERLNELVE-KNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRME---GSPEEVIPAYEEDL  242 (249)
T ss_pred             HHHHHHHHH-cCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEc---CCHHHHHHHHHHhh
Confidence            445566644 36999999999999999999999999 877777   69999998875543

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=98.41  E-value=7.3e-07  Score=66.96  Aligned_cols=53  Identities=19%  Similarity=0.212  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|+++.++.|.|+|++|||++++..+||++++|+ |++...   ++++++..
T Consensus       180 ~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~  233 (265)
T PRK10253        180 IDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQ---GAPKEIVT  233 (265)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHhh
Confidence            467888888876568999999999999999999999998 776665   46666543

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=98.41  E-value=6.8e-07  Score=66.85  Aligned_cols=51  Identities=14%  Similarity=0.223  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNL   58 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L   58 (107)
                      ..++++|++++++.|+|+|++|||++++..+||++++|+ |++...   ++++++
T Consensus       189 ~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~---g~~~~~  240 (262)
T PRK09984        189 RIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYD---GSSQQF  240 (262)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---CCHHHh
Confidence            467888999876668999999999999999999999999 776665   466655

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=98.40  E-value=6.8e-07  Score=66.72  Aligned_cols=52  Identities=21%  Similarity=0.361  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      .+++++|++++++.|.|+|++|||++++..+||++++|+ |++...   ++++++.
T Consensus       188 ~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~---~~~~~~~  240 (258)
T PRK11701        188 ARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES---GLTDQVL  240 (258)
T ss_pred             HHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe---CCHHHHh
Confidence            467888888876668999999999999999999999999 766655   5666654

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=98.40  E-value=7.4e-07  Score=66.22  Aligned_cols=52  Identities=27%  Similarity=0.415  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|++++++.|.|+|++|||++++..+||++++|+ |++...   ++++++.
T Consensus       183 ~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~  235 (252)
T TIGR03005       183 GEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQ---GKPDEIF  235 (252)
T ss_pred             HHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe---CCHHHHh
Confidence            467888988877668999999999999999999999999 776655   4555554

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=98.40  E-value=6.9e-07  Score=66.65  Aligned_cols=51  Identities=27%  Similarity=0.388  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..++++|+++++ .|+|+|+||||++++..+|||+++|+ |++...   ++++++.
T Consensus       189 ~~l~~~l~~l~~-~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~  240 (257)
T PRK10619        189 GEVLRIMQQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE---GAPEQLF  240 (257)
T ss_pred             HHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe---CCHHHhh
Confidence            467888888865 49999999999999999999999999 877765   4666554

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.40  E-value=5.2e-07  Score=73.37  Aligned_cols=53  Identities=17%  Similarity=0.297  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      -.++++|++|.+++|.+.+|++||+..+..+||+++||+ |+++-+   |+.+++++
T Consensus       463 aQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~---G~~~~if~  516 (534)
T COG4172         463 AQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQ---GPTEAVFA  516 (534)
T ss_pred             HHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeee---CCHHHHhc
Confidence            368999999999999999999999999999999999999 888877   46666665

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.39  E-value=7.8e-07  Score=64.59  Aligned_cols=50  Identities=22%  Similarity=0.285  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNL   58 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L   58 (107)
                      .+++++|+++++ .|.|+|++|||++++..+||++++|+ |++...   ++++++
T Consensus       169 ~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~  219 (222)
T cd03224         169 EEIFEAIRELRD-EGVTILLVEQNARFALEIADRAYVLERGRVVLE---GTAAEL  219 (222)
T ss_pred             HHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEe---CCHHHH
Confidence            467888888875 58999999999999999999999999 776654   455443

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.39  E-value=6.7e-07  Score=64.74  Aligned_cols=43  Identities=26%  Similarity=0.208  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS   47 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~   47 (107)
                      ..++++|++++++.|.|||++|||++++..+||++++|+ |++.
T Consensus       167 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~  210 (213)
T cd03259         167 EELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIV  210 (213)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence            467888888876568999999999999999999999998 6544

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=98.39  E-value=7.1e-07  Score=64.75  Aligned_cols=44  Identities=30%  Similarity=0.404  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI   48 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~   48 (107)
                      .++.++|++++++.|.|+|++|||++++..+||++++|+ |++..
T Consensus       168 ~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  212 (214)
T cd03297         168 LQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY  212 (214)
T ss_pred             HHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence            467888988877668999999999999999999999998 76544

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=98.38  E-value=8.2e-07  Score=66.23  Aligned_cols=53  Identities=21%  Similarity=0.288  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|++++++.|.|||++|||++++..+||++++|+ |+....   ++++++.+
T Consensus       177 ~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~---~~~~~~~~  230 (254)
T PRK10418        177 ARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQ---GDVETLFN  230 (254)
T ss_pred             HHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEe---cCHHHHhh
Confidence            457788888876668999999999999999999999999 766554   56666543

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.38  E-value=9.5e-07  Score=65.29  Aligned_cols=52  Identities=27%  Similarity=0.325  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..++++|++++++.|.|+|++|||++++..+||++++|+ |++...   ++++++.
T Consensus       172 ~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~  224 (242)
T cd03295         172 DQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQV---GTPDEIL  224 (242)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe---cCHHHHH
Confidence            467788888876568999999999999999999999999 776655   4555553

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.38  E-value=9.9e-07  Score=66.13  Aligned_cols=53  Identities=21%  Similarity=0.263  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec------CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE------GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~------g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|++++++.|.|+|+||||++++..+||++++|+      |+++..   ++++++.+
T Consensus       187 ~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~---~~~~~~~~  245 (261)
T PRK14258        187 MKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF---GLTKKIFN  245 (261)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEe---CCHHHHHh
Confidence            467788888865558999999999999999999999999      333333   57777654

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.37  E-value=7.6e-07  Score=64.79  Aligned_cols=43  Identities=23%  Similarity=0.301  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS   47 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~   47 (107)
                      .++.++|++++++.|.|||++|||++++..+||++++|+ |++.
T Consensus       182 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~  225 (228)
T cd03257         182 AQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIV  225 (228)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEE
Confidence            467888988876558999999999999999999999999 6543

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.37  E-value=8.8e-07  Score=66.74  Aligned_cols=52  Identities=21%  Similarity=0.361  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|++++++ |.|+|+||||++++..+||++++|+ |++...   ++++++..
T Consensus       173 ~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~  225 (271)
T PRK13638        173 TQMIAIIRRIVAQ-GNHVIISSHDIDLIYEISDAVYVLRQGQILTH---GAPGEVFA  225 (271)
T ss_pred             HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHhc
Confidence            4678889888754 8999999999999999999999998 776666   46666544

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.37  E-value=6.8e-07  Score=65.30  Aligned_cols=43  Identities=19%  Similarity=0.144  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcce
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIS   49 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~   49 (107)
                      ..++++|++++++  +|+|++|||++++..+||++++|+ |++...
T Consensus       178 ~~l~~~l~~~~~~--~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~  221 (227)
T cd03260         178 AKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLNGRLVEF  221 (227)
T ss_pred             HHHHHHHHHHhhC--cEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence            4678888888654  899999999999999999999999 766555

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=98.37  E-value=9.2e-07  Score=65.17  Aligned_cols=46  Identities=24%  Similarity=0.240  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST   50 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g   50 (107)
                      ..+.++|++++++.|+|+|+||||++++..+||++++|+ |+++..|
T Consensus       151 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~  197 (230)
T TIGR01184       151 GNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG  197 (230)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEeccc
Confidence            467888888877668999999999999999999999998 7766553

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.37  E-value=9.2e-07  Score=66.12  Aligned_cols=51  Identities=18%  Similarity=0.159  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|++++ + ++|+|+||||++++..+||++++|+ |++...   ++++++.+
T Consensus       191 ~~l~~~l~~l~-~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~~  242 (258)
T PRK14268        191 ARIEDLIMNLK-K-DYTIVIVTHNMQQAARISDYTGFFLMGELIEF---GQTRQIFH  242 (258)
T ss_pred             HHHHHHHHHHh-h-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEe---CCHHHHhc
Confidence            46778888885 3 7999999999999999999999998 776655   56766643

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.37  E-value=8.5e-07  Score=66.77  Aligned_cols=53  Identities=15%  Similarity=0.202  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|++++++.|.|||+||||++++..+||++++|+ |++...   ++++++.+
T Consensus       186 ~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~~  239 (267)
T PRK15112        186 SQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVER---GSTADVLA  239 (267)
T ss_pred             HHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEec---CCHHHHhc
Confidence            467788888876668999999999999999999999999 766655   46666544

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=98.36  E-value=9.2e-07  Score=66.43  Aligned_cols=53  Identities=23%  Similarity=0.299  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++.++|++++++.|.|+|++|||++++..+||++++|+ |++...   ++++++.+
T Consensus       184 ~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~---~~~~~~~~  237 (265)
T PRK10575        184 VDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQ---GTPAELMR  237 (265)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe---cCHHHhcC
Confidence            467888888876568999999999999999999999998 776655   45665543

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.36  E-value=1.3e-06  Score=66.23  Aligned_cols=60  Identities=22%  Similarity=0.239  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHHHHhhhhh
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNGMNKFLSL   68 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~~~~l~~   68 (107)
                      ..++++|.++.+ .|.|+|++|||++++..+||++++|+ |++...   ++++++.+.+..+++.
T Consensus       180 ~~l~~~L~~~~~-~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~---g~~~~~~~~~~~~~~~  240 (264)
T PRK13546        180 QKCLDKIYEFKE-QNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDY---GELDDVLPKYEAFLND  240 (264)
T ss_pred             HHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEe---CCHHHHHHHhHHHHHH
Confidence            357778888754 58999999999999999999999998 766655   6888887765544443

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.36  E-value=1.4e-06  Score=71.78  Aligned_cols=72  Identities=29%  Similarity=0.486  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhhhhhc----CeeeeeCC
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLL----GITFRRDP   77 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~l~~~----~i~~~~~~   77 (107)
                      +.+.++|++|++. +++|++|.|||.....++|-|.++.|.+++.|-+..|..+..+.|.|++++    +++|+..+
T Consensus       250 l~~ar~Irel~~~-~k~ViVVEHDLavLD~lsD~vhI~YG~pg~YGvvs~p~svr~gIN~yL~Gyl~~EN~R~R~~~  325 (591)
T COG1245         250 LNAARVIRELAED-GKYVIVVEHDLAVLDYLSDFVHILYGEPGVYGVVSKPKSVRVGINEYLKGYLPEENVRFRPEE  325 (591)
T ss_pred             HHHHHHHHHHhcc-CCeEEEEechHHHHHHhhheeEEEecCCccceEeccchHHHHHHHHHHhccCchhcccccccc
Confidence            3567889999876 899999999999999999999999999999999999999999999888876    67776554

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=98.36  E-value=2.7e-06  Score=63.44  Aligned_cols=52  Identities=23%  Similarity=0.378  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|+++.+ .|.|+|++|||++++..+||++++|+ |++...   ++++++..
T Consensus       174 ~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~  226 (256)
T TIGR03873       174 LETLALVRELAA-TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAA---GPPREVLT  226 (256)
T ss_pred             HHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEe---cCHHHhhC
Confidence            467888888865 48999999999999999999999998 877765   46666543

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=98.35  E-value=8.6e-07  Score=67.24  Aligned_cols=53  Identities=21%  Similarity=0.325  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      ..++++|++++++.|.|+|+||||++++.. ||++++|+ |++...   ++++++...
T Consensus       181 ~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~---g~~~~~~~~  234 (280)
T PRK13633        181 REVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVME---GTPKEIFKE  234 (280)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEe---cCHHHHhcC
Confidence            467888998876669999999999999976 99999998 776665   578777653

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.35  E-value=8e-07  Score=66.06  Aligned_cols=53  Identities=23%  Similarity=0.338  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      -|+++.+++|+++ |.|+++|||.|.+|...+..++++. |.+--+   |+|++++.+
T Consensus       189 gEVLkv~~~LAeE-grTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~---G~P~qvf~n  242 (256)
T COG4598         189 GEVLKVMQDLAEE-GRTMVVVTHEMGFARDVSSHVIFLHQGKIEEE---GPPEQVFGN  242 (256)
T ss_pred             HHHHHHHHHHHHh-CCeEEEEeeehhHHHhhhhheEEeecceeccc---CChHHHhcC
Confidence            4899999999876 9999999999999999999999999 655444   799998763

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.35  E-value=1.3e-06  Score=65.56  Aligned_cols=52  Identities=15%  Similarity=0.227  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCch
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQ   56 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~   56 (107)
                      ..+-.+|.++|+++|+.+++||||+++|..+++|++||++.|+..-+..+|+
T Consensus       169 e~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d  220 (259)
T COG4525         169 EQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD  220 (259)
T ss_pred             HHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence            3566788999999999999999999999999999999997777644334443

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.35  E-value=1.1e-06  Score=65.04  Aligned_cols=51  Identities=24%  Similarity=0.386  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|++++++ |.|+|++|||++++..+||++++|+ |++...   ++++++.
T Consensus       181 ~~l~~~l~~~~~~-~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~  232 (250)
T PRK11264        181 GEVLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQ---GPAKALF  232 (250)
T ss_pred             HHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe---CCHHHHh
Confidence            4677888888654 8999999999999999999999998 776655   4666554

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=98.35  E-value=1.1e-06  Score=64.26  Aligned_cols=51  Identities=14%  Similarity=0.202  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      .++.++|+++++ .|+|+|++|||++++..+||++++|+ |++...   ++++++.
T Consensus       170 ~~~~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~  221 (232)
T cd03218         170 QDIQKIIKILKD-RGIGVLITDHNVRETLSITDRAYIIYEGKVLAE---GTPEEIA  221 (232)
T ss_pred             HHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEE---eCHHHhh
Confidence            467888888875 48999999999999999999999999 776655   4555543

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=98.33  E-value=1.3e-06  Score=64.90  Aligned_cols=52  Identities=21%  Similarity=0.349  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..++++|+++.++.|.|+|+||||++++..+||++++|+ |+....   ++++++.
T Consensus       185 ~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~---~~~~~~~  237 (253)
T TIGR02323       185 ARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES---GLTDQVL  237 (253)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEE---CCHHHHh
Confidence            467788888876668999999999999999999999999 766655   4555543

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.32  E-value=1.3e-06  Score=64.33  Aligned_cols=51  Identities=25%  Similarity=0.391  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|+++++ .|+|+|++|||++++..+||++++|+ |++...   ++++++.
T Consensus       173 ~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~  224 (240)
T PRK09493        173 HEVLKVMQDLAE-EGMTMVIVTHEIGFAEKVASRLIFIDKGRIAED---GDPQVLI  224 (240)
T ss_pred             HHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee---CCHHHHh
Confidence            467788888865 48999999999999999999999999 776655   4555443

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.32  E-value=1.5e-06  Score=65.12  Aligned_cols=52  Identities=15%  Similarity=0.207  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|++++++.|.|+|+||||++++..+||++++|++++...   ++++++.
T Consensus       157 ~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~~i~~~---g~~~~~~  208 (251)
T PRK09544        157 VALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNHHICCS---GTPEVVS  208 (251)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECCceEee---CCHHHHh
Confidence            467788888876558999999999999999999999999755554   4666654

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.32  E-value=1.3e-06  Score=71.21  Aligned_cols=54  Identities=17%  Similarity=0.180  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      ..++++|++++++.|+|||+||||++++..+||++++|+ |++...   ++++++.+.
T Consensus       205 ~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~~  259 (520)
T TIGR03269       205 KLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEE---GTPDEVVAV  259 (520)
T ss_pred             HHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeee---cCHHHHHHH
Confidence            467888999977668999999999999999999999998 776654   566666553

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.31  E-value=1.2e-06  Score=66.54  Aligned_cols=52  Identities=21%  Similarity=0.393  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|++++++.|+|||++|||++++ .+||++++|+ |+....   ++++++.+
T Consensus       180 ~~l~~~l~~l~~~~g~tvli~tH~~~~~-~~~d~i~~l~~G~i~~~---g~~~~~~~  232 (282)
T PRK13640        180 EQILKLIRKLKKKNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQ---GSPVEIFS  232 (282)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEEEe---CCHHHHhc
Confidence            4678888888766689999999999998 4799999998 877766   56776654

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=98.31  E-value=1.8e-06  Score=63.75  Aligned_cols=53  Identities=23%  Similarity=0.246  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|++++.+.|.|+|++|||++++..+||++++|+ |+....   ++++++.+
T Consensus       166 ~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~~  219 (235)
T cd03299         166 EKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV---GKPEEVFK  219 (235)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe---cCHHHHHh
Confidence            467788888876668999999999999999999999998 776655   46665543

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.31  E-value=1.3e-06  Score=65.97  Aligned_cols=52  Identities=21%  Similarity=0.273  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|++++++ |+|||+||||++++..+||++++|+ |++...   ++++++.+
T Consensus       182 ~~l~~~l~~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~  234 (280)
T PRK13649        182 KELMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVYVLEKGKLVLS---GKPKDIFQ  234 (280)
T ss_pred             HHHHHHHHHHHHC-CCEEEEEeccHHHHHHhCCEEEEEECCEEEEe---CCHHHHhc
Confidence            4577888888654 8999999999999999999999999 766655   56766654

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=98.30  E-value=1.4e-06  Score=65.76  Aligned_cols=53  Identities=15%  Similarity=0.298  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|++++++.+.|+|++|||++++..+||++++|+ |++...   ++++++.+
T Consensus       188 ~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~---g~~~~~~~  241 (268)
T PRK10419        188 AGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET---QPVGDKLT  241 (268)
T ss_pred             HHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeee---CChhhccC
Confidence            457888988877668999999999999999999999999 766655   56666553

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=98.29  E-value=1.5e-06  Score=63.80  Aligned_cols=52  Identities=23%  Similarity=0.331  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|+++.+ .|+|+|++|||++++..+||++++++|++...   ++++++.+
T Consensus       150 ~~l~~~l~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~G~i~~~---~~~~~~~~  201 (223)
T TIGR03771       150 ELLTELFIELAG-AGTAILMTTHDLAQAMATCDRVVLLNGRVIAD---GTPQQLQD  201 (223)
T ss_pred             HHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEECCEEEee---cCHHHhcC
Confidence            467888888865 48999999999999999999999998777665   46666544

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.29  E-value=1.6e-06  Score=64.38  Aligned_cols=51  Identities=18%  Similarity=0.248  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|+++. + +.|||+||||++++..+|||+++|+ |++...   ++++++.+
T Consensus       183 ~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~---~~~~~~~~  234 (250)
T PRK14245        183 AKVEELIHELK-K-DYTIVIVTHNMQQAARVSDKTAFFYMGEMVEY---DDTKKIFT  234 (250)
T ss_pred             HHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEE---CCHHHHhc
Confidence            46788888884 3 7899999999999999999999999 777665   56666643

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=98.29  E-value=4.8e-06  Score=62.05  Aligned_cols=52  Identities=19%  Similarity=0.337  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|++++++ |+|+|++|||++++..+||++++|+ |++...   ++++++.+
T Consensus       175 ~~l~~~l~~l~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~~  227 (255)
T PRK11231        175 VELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQ---GTPEEVMT  227 (255)
T ss_pred             HHHHHHHHHHHHC-CCEEEEEECCHHHHHHhcCEEEEEECCeEEEE---cCHHHhcC
Confidence            4577888888654 8999999999999999999999998 777665   45555543

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.29  E-value=1.9e-06  Score=64.13  Aligned_cols=51  Identities=22%  Similarity=0.233  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|++++ + +.|+|++|||++++..+|||+++|+ |++...   ++++++..
T Consensus       187 ~~l~~~l~~~~-~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~  238 (254)
T PRK14273        187 GKIEELIINLK-E-SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEE---SSTDELFF  238 (254)
T ss_pred             HHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHHh
Confidence            46788888885 3 6899999999999999999999999 776665   56666653

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=98.28  E-value=1.6e-06  Score=64.31  Aligned_cols=50  Identities=18%  Similarity=0.232  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|+++. + ++|||+||||++++..+||++++|+ |++...   ++++++.
T Consensus       186 ~~l~~~l~~~~-~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~---g~~~~~~  236 (253)
T PRK14242        186 QKIEELIHELK-A-RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEV---GPTEQIF  236 (253)
T ss_pred             HHHHHHHHHHh-c-CCeEEEEEecHHHHHHhCCEEEEEECCEEEEe---CCHHHHH
Confidence            56788888884 3 6899999999999999999999999 776655   4666654

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.28  E-value=1.9e-06  Score=65.27  Aligned_cols=52  Identities=27%  Similarity=0.361  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|++++++.|.|+|++|||++++. .||++++|+ |+....   ++++++..
T Consensus       177 ~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~---g~~~~~~~  229 (277)
T PRK13642        177 QEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKE---AAPSELFA  229 (277)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEe---CCHHHHhc
Confidence            46788898887766999999999999996 699999999 876665   56777654

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.28  E-value=2.1e-06  Score=62.14  Aligned_cols=43  Identities=19%  Similarity=0.221  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcc
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSI   48 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~   48 (107)
                      ..+.++|+++++ .|.|+|+||||++++..+||++++|+++.+.
T Consensus       169 ~~l~~~l~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~~~~~  211 (213)
T cd03235         169 EDIYELLRELRR-EGMTILVVTHDLGLVLEYFDRVLLLNRTVVA  211 (213)
T ss_pred             HHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEcCcEee
Confidence            467888888876 5899999999999999999999999854443

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.28  E-value=1.2e-06  Score=71.27  Aligned_cols=45  Identities=20%  Similarity=0.230  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST   50 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g   50 (107)
                      .+++++|++++++ |+|||+||||++++..+|||+++|+ |++...|
T Consensus       442 ~~l~~~l~~l~~~-g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~  487 (506)
T PRK13549        442 YEIYKLINQLVQQ-GVAIIVISSELPEVLGLSDRVLVMHEGKLKGDL  487 (506)
T ss_pred             HHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEe
Confidence            4678889988764 9999999999999999999999998 8777664

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.27  E-value=2.3e-06  Score=63.00  Aligned_cols=52  Identities=13%  Similarity=0.114  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|++++++.|.|+|++|||++++.. ||++++|+ |++...   ++++++.+
T Consensus       169 ~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~---~~~~~~~~  221 (236)
T TIGR03864       169 AAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLAD---GAAAELRG  221 (236)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEe---CCHHHHHH
Confidence            567888988876568999999999999975 99999998 766655   56666654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=98.27  E-value=2.5e-06  Score=62.76  Aligned_cols=53  Identities=25%  Similarity=0.235  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++.++|++++++.|.|+|++|||++++..+||++++|+ |+....   ++++++..
T Consensus       167 ~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~---~~~~~~~~  220 (232)
T cd03300         167 KDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQI---GTPEEIYE  220 (232)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEec---CCHHHHHh
Confidence            467788888876568999999999999999999999998 766554   45555543

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.27  E-value=1.8e-06  Score=66.30  Aligned_cols=51  Identities=24%  Similarity=0.206  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++.++|++++ + ++|||++||+++++..+|||+++|+ |++...   ++++++.+
T Consensus       170 ~~l~~~l~~~~-~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~  221 (301)
T TIGR03522       170 VEIRNVIKNIG-K-DKTIILSTHIMQEVEAICDRVIIINKGKIVAD---KKLDELSA  221 (301)
T ss_pred             HHHHHHHHHhc-C-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHHH
Confidence            46778888885 3 6999999999999999999999998 877766   57777755

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.26  E-value=2.4e-06  Score=62.26  Aligned_cols=45  Identities=27%  Similarity=0.333  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec---CCCcce
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE---GSPSIS   49 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~---g~~~~~   49 (107)
                      .++.++|++++++.|.|+|+||||++++..+||++++|+   |++...
T Consensus       168 ~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~  215 (220)
T cd03293         168 EQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAE  215 (220)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEE
Confidence            467888888876668999999999999999999999998   555443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=98.26  E-value=2.4e-06  Score=63.04  Aligned_cols=52  Identities=12%  Similarity=0.193  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|+++++ .|.|+|++|||++++..+||++++|+ |++...   ++++++.+
T Consensus       174 ~~l~~~l~~~~~-~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~---~~~~~~~~  226 (241)
T PRK10895        174 IDIKRIIEHLRD-SGLGVLITDHNVRETLAVCERAYIVSQGHLIAH---GTPTEILQ  226 (241)
T ss_pred             HHHHHHHHHHHh-cCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEee---CCHHHHhc
Confidence            456778888864 48999999999999999999999999 776655   56666543

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=98.26  E-value=2.3e-06  Score=62.16  Aligned_cols=46  Identities=17%  Similarity=0.302  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST   50 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g   50 (107)
                      ..+.++|+++.++.+.|+|+||||++++..+||++++|+ |++...|
T Consensus       165 ~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~  211 (213)
T TIGR01277       165 EEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS  211 (213)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEec
Confidence            467888888876668999999999999999999999998 7665543

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.26  E-value=2.3e-06  Score=63.02  Aligned_cols=50  Identities=26%  Similarity=0.352  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|+++.+  ++|+|++|||++++..+||++++|+ |+....   ++++++.
T Consensus       180 ~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~---~~~~~~~  230 (242)
T TIGR03411       180 EKTAELLKSLAG--KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAE---GSLDQVQ  230 (242)
T ss_pred             HHHHHHHHHHhc--CCEEEEEECCHHHHHHhCCEEEEEECCeEEee---CCHHHHh
Confidence            467888888854  6899999999999999999999998 776665   4555553

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.25  E-value=2e-06  Score=62.03  Aligned_cols=43  Identities=14%  Similarity=0.067  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI   48 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~   48 (107)
                      ..++++|+++++ .|+|+|++|||++++..+||++++|+ |++..
T Consensus       163 ~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~  206 (208)
T cd03268         163 KELRELILSLRD-QGITVLISSHLLSEIQKVADRIGIINKGKLIE  206 (208)
T ss_pred             HHHHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence            467788888875 58999999999999999999999998 65443

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.25  E-value=2.6e-06  Score=63.27  Aligned_cols=50  Identities=16%  Similarity=0.095  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|+++++  ++|+|++|||++++..+||++++|+ |++...   ++++++.
T Consensus       186 ~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~  236 (253)
T PRK14267        186 AKIEELLFELKK--EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEV---GPTRKVF  236 (253)
T ss_pred             HHHHHHHHHHhh--CCEEEEEECCHHHHHhhCCEEEEEECCEEEEe---CCHHHHH
Confidence            467788888853  5899999999999999999999998 776665   5666654

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.25  E-value=2.1e-06  Score=64.78  Aligned_cols=46  Identities=24%  Similarity=0.299  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST   50 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g   50 (107)
                      ..++++|++++++.++|+|+||||++++..+||++++|+ |++...|
T Consensus       170 ~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~  216 (257)
T PRK11247        170 IEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDL  216 (257)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence            467888888876668999999999999999999999998 7766554

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.25  E-value=2.7e-06  Score=70.86  Aligned_cols=61  Identities=15%  Similarity=0.252  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHHHHhhhhhc
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNGMNKFLSLL   69 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~~~~l~~~   69 (107)
                      ..++++|+++++ .|.|+|+||||++++..+||++++|+ |++...   ++++++...+..+++.+
T Consensus       180 ~~LlelL~el~~-~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~---G~~~el~~~~~~~~~~~  241 (549)
T PRK13545        180 KKCLDKMNEFKE-QGKTIFFISHSLSQVKSFCTKALWLHYGQVKEY---GDIKEVVDHYDEFLKKY  241 (549)
T ss_pred             HHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE---CCHHHHHhhHHHHHHHH
Confidence            357788888754 48999999999999999999999998 766655   67888877666665533

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.24  E-value=2.9e-06  Score=61.52  Aligned_cols=40  Identities=18%  Similarity=0.310  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CC
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GS   45 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~   45 (107)
                      ..+.++|++++++ |.|+|+||||++++..+||++++|+ |+
T Consensus       175 ~~l~~~l~~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~  215 (216)
T TIGR00960       175 RDIMRLFEEFNRR-GTTVLVATHDINLVETYRHRTLTLSRGR  215 (216)
T ss_pred             HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence            4677888888654 8999999999999999999999998 54

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.24  E-value=2.1e-06  Score=65.19  Aligned_cols=52  Identities=23%  Similarity=0.368  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|++++++.|.|||+||||++++. .||++++|+ |+....   ++++++..
T Consensus       177 ~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~---g~~~~~~~  229 (279)
T PRK13635        177 REVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEILEE---GTPEEIFK  229 (279)
T ss_pred             HHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEE---CCHHHHhc
Confidence            46788999998766899999999999996 599999998 776655   56666654

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.24  E-value=1.9e-06  Score=70.11  Aligned_cols=50  Identities=14%  Similarity=0.217  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNL   58 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L   58 (107)
                      .+++++|++++++ |+|||+||||++++..+||++++|+ |++...|   +++++
T Consensus       182 ~~l~~~l~~l~~~-g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g---~~~~~  232 (510)
T PRK09700        182 DYLFLIMNQLRKE-GTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG---MVSDV  232 (510)
T ss_pred             HHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEeeec---chhhC
Confidence            4688899999764 8999999999999999999999998 8776654   55544

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=98.24  E-value=2.7e-06  Score=62.99  Aligned_cols=50  Identities=18%  Similarity=0.135  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|+++.+  +.|+|++|||++++..+|||+++|+ |++...   ++++++.
T Consensus       185 ~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~  235 (252)
T PRK14239        185 GKIEETLLGLKD--DYTMLLVTRSMQQASRISDRTGFFLDGDLIEY---NDTKQMF  235 (252)
T ss_pred             HHHHHHHHHHhh--CCeEEEEECCHHHHHHhCCEEEEEECCEEEEe---CCHHHHH
Confidence            467788888853  5899999999999999999999999 776655   4666654

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=98.24  E-value=2.5e-06  Score=62.68  Aligned_cols=49  Identities=18%  Similarity=0.224  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhh-cCEEEEec-CCCcceeecCCchh
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYL-SDRVIVFE-GSPSISTLANAPQN   57 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~-~driivl~-g~~~~~g~v~tp~~   57 (107)
                      ..+.++|+++.+ .|.|||+||||++++..+ ||++++|+ |++...   +++++
T Consensus       181 ~~l~~~l~~~~~-~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~---g~~~~  231 (243)
T TIGR01978       181 KIVAEGINRLRE-PDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKS---GDVEL  231 (243)
T ss_pred             HHHHHHHHHHHH-CCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEe---cCHHH
Confidence            467888888865 489999999999999999 89999998 766655   45553

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.23  E-value=2.8e-06  Score=62.97  Aligned_cols=50  Identities=22%  Similarity=0.261  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..++++|+++++  +.|+|+||||++++..+||++++|+ |++...   ++++++.
T Consensus       181 ~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~  231 (247)
T TIGR00972       181 GKIEELIQELKK--KYTIVIVTHNMQQAARISDRTAFFYDGELVEY---GPTEQIF  231 (247)
T ss_pred             HHHHHHHHHHHh--cCeEEEEecCHHHHHHhCCEEEEEECCEEEEe---CCHHHHH
Confidence            467788888865  4899999999999999999999999 776655   4666654

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.22  E-value=2.3e-06  Score=66.89  Aligned_cols=50  Identities=18%  Similarity=0.214  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+.+.|+++.+  ++|+|+|||+++.+..+||||++|+ |++...   |+|+++.+
T Consensus       263 ~i~~~i~~l~~--~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~---g~~~~l~~  313 (329)
T PRK14257        263 KIEELILELKK--KYSIIIVTHSMAQAQRISDETVFFYQGWIEEA---GETKTIFI  313 (329)
T ss_pred             HHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHhc
Confidence            46777877753  6899999999999999999999999 766655   68888764

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.22  E-value=2.7e-06  Score=63.57  Aligned_cols=51  Identities=22%  Similarity=0.281  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|+++. + +.|+|+||||++++..+|||+++|+ |++...   ++++++.+
T Consensus       192 ~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~  243 (259)
T PRK14274        192 RKIEELILKLK-E-KYTIVIVTHNMQQAARVSDQTAFFYMGELVEC---NDTNKMFS  243 (259)
T ss_pred             HHHHHHHHHHh-c-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE---CCHHHHhh
Confidence            45678888875 3 6899999999999999999999999 777665   57776643

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.22  E-value=3e-06  Score=62.83  Aligned_cols=51  Identities=12%  Similarity=0.149  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|+++.+  ++|+|++|||++.+..+||++++|+ |++...   ++++++.+
T Consensus       183 ~~l~~~l~~~~~--~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~~  234 (250)
T PRK14262        183 QRIEKLLEELSE--NYTIVIVTHNIGQAIRIADYIAFMYRGELIEY---GPTREIVE  234 (250)
T ss_pred             HHHHHHHHHHhc--CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---cCHHHHHh
Confidence            467888888853  6899999999999999999999999 877665   56666643

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.22  E-value=2e-06  Score=69.98  Aligned_cols=45  Identities=20%  Similarity=0.226  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST   50 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g   50 (107)
                      .+++++|++++++ |.|||+||||++++..+||++++|+ |++...|
T Consensus       433 ~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~  478 (501)
T PRK11288        433 HEIYNVIYELAAQ-GVAVLFVSSDLPEVLGVADRIVVMREGRIAGEL  478 (501)
T ss_pred             HHHHHHHHHHHhC-CCEEEEECCCHHHHHhhCCEEEEEECCEEEEEE
Confidence            5788899999764 8999999999999999999999998 8777664

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.22  E-value=2.1e-06  Score=66.70  Aligned_cols=54  Identities=19%  Similarity=0.244  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNGM   62 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~   62 (107)
                      .+.+.|+.++++.+.||++.||+++.+..|||||+.|+ |+.+..   |+-+.|.+.|
T Consensus       194 ~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~d---g~l~~l~~~f  248 (325)
T COG4586         194 NIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFD---GTLAQLQEQF  248 (325)
T ss_pred             HHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeec---ccHHHHHHHh
Confidence            57889999999999999999999999999999999999 999988   4777777765

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.22  E-value=2.6e-06  Score=62.97  Aligned_cols=44  Identities=18%  Similarity=0.188  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI   48 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~   48 (107)
                      ..+.++|++++++.+.|+|+||||++++..+||++++|+ |++..
T Consensus       190 ~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~  234 (236)
T cd03267         190 ENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY  234 (236)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence            467888888876668999999999999999999999998 65443

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.22  E-value=3e-06  Score=62.86  Aligned_cols=50  Identities=14%  Similarity=0.257  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..++++|+++. + ++|+|+||||++++..+||++++|+ |++...   ++++++.
T Consensus       179 ~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~  229 (246)
T PRK14269        179 GVIEELLKELS-H-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEF---GESKEFF  229 (246)
T ss_pred             HHHHHHHHHHh-C-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEE---CCHHHHH
Confidence            46778888875 3 8999999999999999999999999 777665   4666554

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.22  E-value=3.7e-06  Score=60.70  Aligned_cols=38  Identities=37%  Similarity=0.498  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      ..++++|++++++ |.|+|++|||++++..+||++++|+
T Consensus       171 ~~~~~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~  208 (211)
T cd03225         171 RELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLE  208 (211)
T ss_pred             HHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence            4678888888765 8999999999999999999999998

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.22  E-value=2.9e-06  Score=62.97  Aligned_cols=50  Identities=28%  Similarity=0.355  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|+++. + ++|+|++|||++++..+||++++|+ |++...   ++++++.
T Consensus       186 ~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~  236 (251)
T PRK14244        186 NVIENLIQELK-K-NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEY---NTTQEIF  236 (251)
T ss_pred             HHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhcCEEEEEECCEEEEe---CCHHHHh
Confidence            45778888874 3 7999999999999999999999999 776655   4555554

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.21  E-value=2.2e-06  Score=64.46  Aligned_cols=52  Identities=21%  Similarity=0.348  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|++++++.|+|+|+||||++++.. |||+++|+ |++...   ++++++.+
T Consensus       179 ~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~---g~~~~~~~  231 (269)
T PRK13648        179 QNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKE---GTPTEIFD  231 (269)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEe---cCHHHHhc
Confidence            467788888876568999999999999975 99999999 776655   56776654

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.21  E-value=3.2e-06  Score=60.94  Aligned_cols=40  Identities=23%  Similarity=0.446  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CC
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GS   45 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~   45 (107)
                      ..+.++|++++++ |.|+|++|||++++..+||++++|+ |+
T Consensus       163 ~~l~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~  203 (205)
T cd03226         163 ERVGELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLLLANGA  203 (205)
T ss_pred             HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence            4678888888654 8999999999999999999999998 54

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.21  E-value=3.4e-06  Score=62.69  Aligned_cols=51  Identities=20%  Similarity=0.219  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|+++.+  ++|+|+||||++++..+||++++|+ |++...   ++++++..
T Consensus       185 ~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~~  236 (252)
T PRK14256        185 LKIEELIEELKE--KYTIIIVTHNMQQAARVSDYTAFFYMGDLVEC---GETKKIFT  236 (252)
T ss_pred             HHHHHHHHHHHh--CCcEEEEECCHHHHHhhCCEEEEEECCEEEEe---CCHHHHHh
Confidence            567888888864  5899999999999999999999999 766655   56666543

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=98.20  E-value=3.7e-06  Score=62.09  Aligned_cols=53  Identities=19%  Similarity=0.265  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|++++++.+.|+|++||+++++..+||++++|+ |+....   ++++++.+
T Consensus       167 ~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~---~~~~~~~~  220 (237)
T TIGR00968       167 KELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQI---GSPDEVYD  220 (237)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEe---cCHHHHHc
Confidence            467788888876558999999999999999999999999 766554   56666653

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.20  E-value=2.3e-06  Score=69.87  Aligned_cols=51  Identities=18%  Similarity=0.222  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|++++++ |.|||+||||++++..+|||+++|+ |++...|   +++++.
T Consensus       440 ~~l~~~l~~l~~~-g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~---~~~~~~  491 (510)
T PRK15439        440 NDIYQLIRSIAAQ-NVAVLFISSDLEEIEQMADRVLVMHQGEISGAL---TGAAIN  491 (510)
T ss_pred             HHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEE---ccccCC
Confidence            4678899998764 8999999999999999999999998 8777654   555543

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.20  E-value=3.1e-06  Score=61.37  Aligned_cols=42  Identities=21%  Similarity=0.230  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS   47 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~   47 (107)
                      ..+.++|+++++ .|.|+|+||||++++..+||++++|+ |++.
T Consensus       173 ~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~  215 (218)
T cd03266         173 RALREFIRQLRA-LGKCILFSTHIMQEVERLCDRVVVLHRGRVV  215 (218)
T ss_pred             HHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhcCEEEEEECCEEe
Confidence            467888888865 48999999999999999999999998 6544

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.20  E-value=3.8e-06  Score=62.25  Aligned_cols=50  Identities=16%  Similarity=0.055  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|++++ + +.|+|++|||++++..+||++++|+ |++...   ++++++.
T Consensus       183 ~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~  233 (250)
T PRK14247        183 AKIESLFLELK-K-DMTIVLVTHFPQQAARISDYVAFLYKGQIVEW---GPTREVF  233 (250)
T ss_pred             HHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEE---CCHHHHH
Confidence            46778888874 3 7999999999999999999999999 776655   4666554

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.20  E-value=3.4e-06  Score=63.39  Aligned_cols=50  Identities=18%  Similarity=0.228  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      .++.++|+++++  +.|||++|||++++..+|||+++|+ |++...   ++++++.
T Consensus       201 ~~l~~~l~~~~~--~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~---~~~~~~~  251 (268)
T PRK14248        201 AKIEELITELKE--EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEY---DQTEQIF  251 (268)
T ss_pred             HHHHHHHHHHhc--CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEe---CCHHHHH
Confidence            467788888853  5899999999999999999999998 776665   4666554

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.20  E-value=3.7e-06  Score=62.28  Aligned_cols=51  Identities=18%  Similarity=0.208  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|++++ + ++|+|++|||++++..+|||+++|+ |++...   ++++++.+
T Consensus       185 ~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~~  236 (252)
T PRK14272        185 ARIEDLMTDLK-K-VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEH---GPTDQLFT  236 (252)
T ss_pred             HHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHHh
Confidence            46778888885 3 6899999999999999999999998 776655   56666543

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.20  E-value=4e-06  Score=62.25  Aligned_cols=50  Identities=18%  Similarity=0.173  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|+++.+  +.|+|+||||++++..+|||+++|+ |++...   ++++++.
T Consensus       184 ~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~---~~~~~~~  234 (251)
T PRK14270        184 LKIEDLMVELKK--EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEF---NKTEKIF  234 (251)
T ss_pred             HHHHHHHHHHHh--CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEe---CCHHHHh
Confidence            467788888854  5899999999999999999999999 776665   4666654

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=98.19  E-value=4e-06  Score=60.79  Aligned_cols=40  Identities=28%  Similarity=0.400  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CC
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GS   45 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~   45 (107)
                      ..+.++|++++++.|+|||+||||++++. +||++++|+ |+
T Consensus       177 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~  217 (218)
T cd03255         177 KEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGK  217 (218)
T ss_pred             HHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCc
Confidence            46788888887655899999999999987 999999998 54

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.19  E-value=3.1e-06  Score=68.53  Aligned_cols=51  Identities=10%  Similarity=0.019  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..++++|++++++ |+|+|+||||++++..+||++++|+ |++...   ++++++.
T Consensus       172 ~~l~~~l~~~~~~-g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~---~~~~~~~  223 (490)
T PRK10938        172 QQLAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVLADCTLAET---GEREEIL  223 (490)
T ss_pred             HHHHHHHHHHHhc-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEe---CCHHHHh
Confidence            4678889998764 8999999999999999999999998 877665   4555543

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.18  E-value=3.1e-06  Score=69.12  Aligned_cols=51  Identities=18%  Similarity=0.277  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      .++.++|++++++ |+|||+||||++++..+||++++|+ |++...   ++++++.
T Consensus       177 ~~l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~  228 (510)
T PRK15439        177 ERLFSRIRELLAQ-GVGIVFISHKLPEIRQLADRISVMRDGTIALS---GKTADLS  228 (510)
T ss_pred             HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---cChHHcC
Confidence            4678889888654 8999999999999999999999998 877665   4555553

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.18  E-value=3.6e-06  Score=61.86  Aligned_cols=43  Identities=26%  Similarity=0.348  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI   48 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~   48 (107)
                      .++.++|++++++ |+|+|++|||++++..+||++++|+ |++..
T Consensus       179 ~~~~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  222 (224)
T cd03220         179 EKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEKGKIRF  222 (224)
T ss_pred             HHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            4678888888765 8999999999999999999999999 65443

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.17  E-value=3.5e-06  Score=63.79  Aligned_cols=51  Identities=27%  Similarity=0.384  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|+++++ .|.|+|++|||++++ ..||++++|+ |+....   ++++++..
T Consensus       173 ~~l~~~l~~l~~-~g~til~~tH~~~~~-~~~d~v~~l~~G~i~~~---g~~~~~~~  224 (274)
T PRK13644        173 IAVLERIKKLHE-KGKTIVYITHNLEEL-HDADRIIVMDRGKIVLE---GEPENVLS  224 (274)
T ss_pred             HHHHHHHHHHHh-CCCEEEEEecCHHHH-hhCCEEEEEECCEEEEE---CCHHHHhc
Confidence            467788888865 499999999999998 5699999998 877665   46666544

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.17  E-value=4.5e-06  Score=61.91  Aligned_cols=50  Identities=14%  Similarity=0.166  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..++++|+++.+  +.|+|+||||++++..+||++++|+ |++...   ++++++.
T Consensus       184 ~~l~~~l~~~~~--~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~  234 (251)
T PRK14251        184 SEIEETLMELKH--QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEA---GPTEEMF  234 (251)
T ss_pred             HHHHHHHHHHHc--CCeEEEEECCHHHHHhhcCEEEEEECCEEEEe---CCHHHHH
Confidence            467788888743  6899999999999999999999998 776655   4666554

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.17  E-value=3.4e-06  Score=68.58  Aligned_cols=45  Identities=18%  Similarity=0.205  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST   50 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g   50 (107)
                      .+++++|++++++ |+|+|+||||++++..+||++++|+ |++...|
T Consensus       178 ~~l~~~l~~l~~~-~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~  223 (501)
T PRK10762        178 ESLFRVIRELKSQ-GRGIVYISHRLKEIFEICDDVTVFRDGQFIAER  223 (501)
T ss_pred             HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEec
Confidence            4678889998654 8999999999999999999999998 8776664

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.17  E-value=3.4e-06  Score=68.64  Aligned_cols=50  Identities=14%  Similarity=0.218  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNL   58 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L   58 (107)
                      .+++++|+++++ .|+|+|+||||++++..+||++++|+ |++...|   +++++
T Consensus       180 ~~l~~~l~~l~~-~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~---~~~~~  230 (506)
T PRK13549        180 AVLLDIIRDLKA-HGIACIYISHKLNEVKAISDTICVIRDGRHIGTR---PAAGM  230 (506)
T ss_pred             HHHHHHHHHHHH-CCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeec---ccccC
Confidence            467888998865 48999999999999999999999999 8776664   44444

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.17  E-value=4.4e-06  Score=61.86  Aligned_cols=50  Identities=22%  Similarity=0.272  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..++++|+++++  +.|||+||||++++..+||++++|+ |++...   ++++++.
T Consensus       182 ~~l~~~l~~~~~--~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~  232 (249)
T PRK14253        182 HKIEELMEELKK--NYTIVIVTHSMQQARRISDRTAFFLMGELVEH---DDTQVIF  232 (249)
T ss_pred             HHHHHHHHHHhc--CCeEEEEecCHHHHHHhCCEEEEEECCEEEEe---CCHHHHH
Confidence            467788888864  5899999999999999999999999 776655   4555543

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.16  E-value=5.4e-06  Score=59.93  Aligned_cols=38  Identities=26%  Similarity=0.433  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      .++.++|+++++ .|+|+|+||||++++..+||++++|+
T Consensus       174 ~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~i~~l~  211 (214)
T TIGR02673       174 ERILDLLKRLNK-RGTTVIVATHDLSLVDRVAHRVIILD  211 (214)
T ss_pred             HHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEec
Confidence            467888888865 48999999999999999999999998

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.16  E-value=3.1e-06  Score=66.13  Aligned_cols=46  Identities=26%  Similarity=0.274  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST   50 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g   50 (107)
                      -|++-.|.+|.++.++.|+.|||.+++++++||++++|+ |++.+.|
T Consensus       165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g  211 (352)
T COG4148         165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASG  211 (352)
T ss_pred             hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecC
Confidence            488999999999999999999999999999999999999 9888875

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=98.16  E-value=4.6e-06  Score=62.77  Aligned_cols=50  Identities=18%  Similarity=0.232  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|+++++  ++|+|+||||++++..+||++++|+ |++...   ++++++.
T Consensus       200 ~~l~~~L~~l~~--~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~---g~~~~~~  250 (267)
T PRK14235        200 AKVEELIDELRQ--NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEV---GDTEKMF  250 (267)
T ss_pred             HHHHHHHHHHhc--CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEe---CCHHHHH
Confidence            467888888853  6899999999999999999999999 776655   4666554

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.16  E-value=3.4e-06  Score=68.57  Aligned_cols=45  Identities=22%  Similarity=0.237  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST   50 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g   50 (107)
                      ..+.++|++++++ |.|+|+||||++++..+||++++|+ |++...|
T Consensus       432 ~~l~~~l~~~~~~-g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~  477 (501)
T PRK10762        432 KEIYQLINQFKAE-GLSIILVSSEMPEVLGMSDRILVMHEGRISGEF  477 (501)
T ss_pred             HHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEe
Confidence            5678899998765 9999999999999999999999998 7766654

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=98.15  E-value=5e-06  Score=62.72  Aligned_cols=51  Identities=16%  Similarity=0.217  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|++++++ |+|||++|||++++..+||++++++|++...   ++++++.
T Consensus       179 ~~l~~~L~~~~~~-g~tviivsH~~~~~~~~~d~v~~~~G~i~~~---g~~~~~~  229 (272)
T PRK15056        179 ARIISLLRELRDE-GKTMLVSTHNLGSVTEFCDYTVMVKGTVLAS---GPTETTF  229 (272)
T ss_pred             HHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEECCEEEee---cCHHhcc
Confidence            4678888888654 8999999999999999999998887877665   4666553

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=98.15  E-value=4.8e-06  Score=62.88  Aligned_cols=50  Identities=14%  Similarity=0.228  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|+++.+  +.|+|+||||++++..+||++++|+ |++...   ++++++.
T Consensus       204 ~~l~~~l~~~~~--~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~---g~~~~~~  254 (271)
T PRK14238        204 LKVEELVQELKK--DYSIIIVTHNMQQAARISDKTAFFLNGYVNEY---DDTDKIF  254 (271)
T ss_pred             HHHHHHHHHHHc--CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEe---CCHHHHH
Confidence            467788888853  6899999999999999999999999 776655   4555553

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.15  E-value=7.7e-06  Score=61.70  Aligned_cols=54  Identities=17%  Similarity=0.168  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCC--------cceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSP--------SISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~--------~~~g~v~tp~~L~~   60 (107)
                      ..+.++|++++ + +.|+|+||||++++..+||++++|+ |+.        +...+.++++++.+
T Consensus       191 ~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~  253 (269)
T PRK14259        191 LKIEETMHELK-K-NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFN  253 (269)
T ss_pred             HHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHHHHh
Confidence            46778888884 3 6899999999999999999999998 222        11224467777654

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=98.14  E-value=4.8e-06  Score=61.69  Aligned_cols=50  Identities=20%  Similarity=0.234  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|+++. + +.|+|+||||++.+..+||++++|+ |++...   ++++++.
T Consensus       183 ~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~---~~~~~~~  233 (250)
T PRK14240        183 LKIEELIQELK-K-DYTIVIVTHNMQQASRISDKTAFFLNGEIVEF---GDTVDLF  233 (250)
T ss_pred             HHHHHHHHHHh-c-CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEe---CCHHHHH
Confidence            45778888884 3 7899999999999999999999998 777665   4555554

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.14  E-value=5.4e-06  Score=58.86  Aligned_cols=42  Identities=31%  Similarity=0.433  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCC
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSP   46 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~   46 (107)
                      ..++++|++++++.+.|+|++|||++++..+||++++|+ |++
T Consensus       134 ~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i  176 (180)
T cd03214         134 IELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRI  176 (180)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence            467788888866558899999999999999999999998 644

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.14  E-value=4.7e-06  Score=60.50  Aligned_cols=48  Identities=19%  Similarity=0.259  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchh
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQN   57 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~   57 (107)
                      ..++++|+++++  +.|+|++|||++++..+||++++|+ |++...   +++++
T Consensus       170 ~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~---~~~~~  218 (220)
T cd03263         170 RAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCI---GSPQE  218 (220)
T ss_pred             HHHHHHHHHHhc--CCEEEEEcCCHHHHHHhcCEEEEEECCEEEec---CCHHH
Confidence            467788888864  5899999999999999999999998 766654   45544

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.14  E-value=5.7e-06  Score=62.04  Aligned_cols=39  Identities=10%  Similarity=0.298  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      ..+.++|++++++.|+|+|+||||++++..+||++++|+
T Consensus       165 ~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~  203 (255)
T PRK11248        165 EQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLS  203 (255)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence            467888888866568999999999999999999999997

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.13  E-value=7.3e-06  Score=57.87  Aligned_cols=40  Identities=23%  Similarity=0.286  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CC
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GS   45 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~   45 (107)
                      ..+.++|++++++ |.|+|++|||++++..+||++++|+ |+
T Consensus       132 ~~l~~~l~~~~~~-g~tiii~th~~~~~~~~~d~i~~l~~g~  172 (173)
T cd03230         132 REFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGR  172 (173)
T ss_pred             HHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEeCCC
Confidence            5678899998765 8999999999999999999999998 53

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.13  E-value=4.9e-06  Score=60.07  Aligned_cols=42  Identities=26%  Similarity=0.395  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS   47 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~   47 (107)
                      ..+.++|+++.++ |.|+|++|||++++..+||++++|+ |++.
T Consensus       165 ~~~~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~  207 (210)
T cd03269         165 ELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLNKGRAV  207 (210)
T ss_pred             HHHHHHHHHHHHC-CCEEEEECCCHHHHHHhhhEEEEEeCCEEE
Confidence            4677888888654 8999999999999999999999998 6543

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.13  E-value=6.7e-06  Score=61.07  Aligned_cols=51  Identities=14%  Similarity=0.088  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|+++.  .+.|||+||||++++..+||++++|+ |+....   ++++++..
T Consensus       184 ~~l~~~l~~~~--~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~~  235 (251)
T PRK14249        184 MRIEELMQELK--QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEY---GRTGEIFS  235 (251)
T ss_pred             HHHHHHHHHHh--cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEe---CCHHHHHh
Confidence            45678888874  37999999999999999999999998 766655   56666543

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=98.13  E-value=6.3e-06  Score=61.07  Aligned_cols=48  Identities=15%  Similarity=0.293  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhh-cCEEEEec-CCCcceeecCCch
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYL-SDRVIVFE-GSPSISTLANAPQ   56 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~-~driivl~-g~~~~~g~v~tp~   56 (107)
                      .+++++|+++++ .|.|+|++|||++++..+ ||++++|+ |++...   ++++
T Consensus       188 ~~l~~~l~~~~~-~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~---~~~~  237 (252)
T CHL00131        188 KIIAEGINKLMT-SENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT---GDAE  237 (252)
T ss_pred             HHHHHHHHHHHh-CCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe---cChh
Confidence            467788888864 489999999999999887 99999998 777665   4665

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.12  E-value=4.8e-06  Score=61.51  Aligned_cols=37  Identities=30%  Similarity=0.249  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      ..++++|+++++ .|.|+|+||||++++ .+||++++|.
T Consensus       176 ~~l~~~l~~~~~-~g~tii~itH~~~~~-~~~d~i~~l~  212 (226)
T cd03270         176 DRLIETLKRLRD-LGNTVLVVEHDEDTI-RAADHVIDIG  212 (226)
T ss_pred             HHHHHHHHHHHh-CCCEEEEEEeCHHHH-HhCCEEEEeC
Confidence            467888888865 489999999999997 5999999994

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.12  E-value=6.3e-06  Score=60.82  Aligned_cols=50  Identities=18%  Similarity=0.252  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNL   58 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L   58 (107)
                      ..+.++|+++.+ .|+|+|++|||++++..+||++++|+ |+....   ++++++
T Consensus       178 ~~l~~~l~~~~~-~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~---~~~~~~  228 (242)
T PRK11124        178 AQIVSIIRELAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQ---GDASCF  228 (242)
T ss_pred             HHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe---CCHHHh
Confidence            457788888864 48999999999999999999999998 766655   354443

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=98.12  E-value=6e-06  Score=62.14  Aligned_cols=50  Identities=18%  Similarity=0.168  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|+++. + +.|+|++|||++++..+||++++|+ |++...   ++++++.
T Consensus       200 ~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~  250 (267)
T PRK14237        200 MQLEETMFELK-K-NYTIIIVTHNMQQAARASDYTAFFYLGDLIEY---DKTRNIF  250 (267)
T ss_pred             HHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCEEEEEECCEEEEe---CCHHHHh
Confidence            56778888884 3 6899999999999999999999999 776665   4666654

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.12  E-value=6.9e-06  Score=60.92  Aligned_cols=50  Identities=16%  Similarity=0.165  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|+++.+  +.|+|+||||++++..+||++++|+ |++...   +++.++.
T Consensus       185 ~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~---~~~~~~~  235 (252)
T PRK14255        185 TQIENMLLELRD--QYTIILVTHSMHQASRISDKTAFFLTGNLIEF---ADTKQMF  235 (252)
T ss_pred             HHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEe---CCHHHHh
Confidence            467788888854  4899999999999999999999999 776655   4555544

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=98.11  E-value=6.5e-06  Score=62.12  Aligned_cols=50  Identities=20%  Similarity=0.159  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|+++++  +.|+|++|||++++..+||++++|+ |++...   ++++++.
T Consensus       205 ~~l~~~L~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~  255 (272)
T PRK14236        205 LKIEELITELKS--KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEY---GDTDTLF  255 (272)
T ss_pred             HHHHHHHHHHHh--CCeEEEEeCCHHHHHhhCCEEEEEECCEEEec---CCHHHHh
Confidence            467888888863  6899999999999999999999999 776655   4555554

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=98.11  E-value=7.2e-06  Score=61.36  Aligned_cols=50  Identities=16%  Similarity=0.133  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..++++|+++. + +.|+|++|||++++..+||++++|+ |++...   ++++++.
T Consensus       193 ~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~  243 (260)
T PRK10744        193 GRIEELITELK-Q-DYTVVIVTHNMQQAARCSDYTAFMYLGELIEF---GNTDTIF  243 (260)
T ss_pred             HHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHH
Confidence            45778888884 3 6899999999999999999999999 776665   4555554

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.11  E-value=5.6e-06  Score=67.12  Aligned_cols=45  Identities=11%  Similarity=0.138  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST   50 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g   50 (107)
                      ..+.++|+++++ .|+|+|+||||++++..+||++++|+ |++...|
T Consensus       171 ~~l~~~l~~l~~-~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~  216 (491)
T PRK10982        171 NHLFTIIRKLKE-RGCGIVYISHKMEEIFQLCDEITILRDGQWIATQ  216 (491)
T ss_pred             HHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEeec
Confidence            467888888865 48999999999999999999999999 8777664

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.11  E-value=7e-06  Score=61.39  Aligned_cols=51  Identities=20%  Similarity=0.180  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec------CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE------GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~------g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|+++++  ++|+|++|||++++..+||++++|+      |+++..   ++++++.+
T Consensus       187 ~~l~~~l~~~~~--~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~---~~~~~~~~  243 (259)
T PRK14260        187 MKVEELIHSLRS--ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF---GVTTQIFS  243 (259)
T ss_pred             HHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe---CCHHHHhc
Confidence            467788888853  5899999999999999999999996      655554   57777643

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.11  E-value=8.1e-06  Score=61.22  Aligned_cols=50  Identities=20%  Similarity=0.163  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|+++++  +.|+|+||||++++..+||++++|+ |++...   ++++++.
T Consensus       198 ~~l~~~l~~l~~--~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~  248 (265)
T PRK14252        198 ASIEELISDLKN--KVTILIVTHNMQQAARVSDYTAYMYMGELIEF---GATDTIF  248 (265)
T ss_pred             HHHHHHHHHHHh--CCEEEEEecCHHHHHHhCCEEEEEECCEEEEe---CCHHHHH
Confidence            467788888853  5899999999999999999999999 776665   4666654

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.11  E-value=6.1e-06  Score=66.95  Aligned_cols=45  Identities=13%  Similarity=0.244  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST   50 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g   50 (107)
                      .++.++|+++++ .|+|||+||||++++..+||++++|+ |++...|
T Consensus       178 ~~l~~~l~~l~~-~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~  223 (500)
T TIGR02633       178 EILLDIIRDLKA-HGVACVYISHKLNEVKAVCDTICVIRDGQHVATK  223 (500)
T ss_pred             HHHHHHHHHHHh-CCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeec
Confidence            467888988865 48999999999999999999999998 8776654

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.10  E-value=6.3e-06  Score=62.25  Aligned_cols=53  Identities=26%  Similarity=0.291  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+|.+.|++|+++.|+||++|.++.+.|..+|||.+||. |+++..|   ++++|..
T Consensus       173 ~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G---~~~eL~~  226 (237)
T COG0410         173 EEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSG---TAAELLA  226 (237)
T ss_pred             HHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEec---CHHHHhc
Confidence            479999999998878999999999999999999999999 9888884   7677655

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.10  E-value=8.3e-06  Score=67.07  Aligned_cols=57  Identities=18%  Similarity=0.234  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceee-c--CCchhHHHH
Q psy1687           4 LHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTL-A--NAPQNLLNG   61 (107)
Q Consensus         4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~-v--~tp~~L~~~   61 (107)
                      ..++++.+++++++ |+|||+|||-++++..+|||+-||. |+.+...+ +  .++++|.+.
T Consensus       176 ~~~lf~~l~~l~~~-G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~~~~~t~~ela~l  236 (501)
T COG3845         176 ADELFEILRRLAAE-GKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVAETTEEELAEL  236 (501)
T ss_pred             HHHHHHHHHHHHHC-CCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecCCCCCCHHHHHHH
Confidence            35788999999765 9999999999999999999999999 87554332 2  246666664

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.10  E-value=7.2e-06  Score=62.52  Aligned_cols=50  Identities=20%  Similarity=0.204  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|++++.  +.|||++|||++++..+||++++|+ |++...   ++++++.
T Consensus       219 ~~l~~~L~~~~~--~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~---g~~~~~~  269 (286)
T PRK14275        219 AKIEDLIQELRG--SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEH---APTAQLF  269 (286)
T ss_pred             HHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHH
Confidence            456778887753  5899999999999999999999999 776655   4666654

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.10  E-value=6.7e-06  Score=57.77  Aligned_cols=41  Identities=22%  Similarity=0.305  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCC
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSP   46 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~   46 (107)
                      ..+.++|++++++ +.|+|++|||++++..+||++++|+ |++
T Consensus       119 ~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~d~~~~l~~g~i  160 (163)
T cd03216         119 ERLFKVIRRLRAQ-GVAVIFISHRLDEVFEIADRVTVLRDGRV  160 (163)
T ss_pred             HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence            4677888888654 8999999999999999999999998 643

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.10  E-value=3.3e-06  Score=64.94  Aligned_cols=52  Identities=13%  Similarity=0.178  Sum_probs=43.3

Q ss_pred             HHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHHH
Q psy1687           7 TLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNGM   62 (107)
Q Consensus         7 i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~   62 (107)
                      +-+.+.++.+ .|.|||++||.|+.+..+||++.+|+ |+.+.+|   +.+.+.+.|
T Consensus       169 Lk~~I~~lk~-~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G---~v~~ir~~~  221 (300)
T COG4152         169 LKDAIFELKE-EGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYG---TVEDIRRSF  221 (300)
T ss_pred             HHHHHHHHHh-cCCEEEEecchHHHHHHHhhhhheecCCceEEec---cHHHHHHhc
Confidence            4566777754 59999999999999999999999999 9999885   666666644

>PRK10908 cell division protein FtsE; Provisional

Probab=98.10  E-value=7.2e-06  Score=59.75  Aligned_cols=41  Identities=20%  Similarity=0.220  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCC
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSP   46 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~   46 (107)
                      .++.++|++++++ +.|+|++|||++++..+||++++|+ |++
T Consensus       174 ~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i  215 (222)
T PRK10908        174 EGILRLFEEFNRV-GVTVLMATHDIGLISRRSYRMLTLSDGHL  215 (222)
T ss_pred             HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence            4678888888654 8999999999999999999999998 654

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=98.10  E-value=6.5e-06  Score=62.85  Aligned_cols=50  Identities=24%  Similarity=0.245  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      .+.+.|+++.  .++|+|+||||++.+.. |||+++|+ |++...   ++|++|.+.
T Consensus       176 ~l~~~l~~~~--~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~---g~~~~l~~~  226 (275)
T cd03289         176 VIRKTLKQAF--ADCTVILSEHRIEAMLE-CQRFLVIEENKVRQY---DSIQKLLNE  226 (275)
T ss_pred             HHHHHHHHhc--CCCEEEEEECCHHHHHh-CCEEEEecCCeEeec---CCHHHHhhC
Confidence            4566777653  37999999999998865 99999998 776655   699988873

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=98.10  E-value=7.8e-06  Score=61.45  Aligned_cols=51  Identities=18%  Similarity=0.214  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec----------CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE----------GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~----------g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|+++.+  +.|||++|||++++..+|||+++|+          |+++..   ++++++.+
T Consensus       188 ~~l~~~L~~~~~--~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~---~~~~~~~~  248 (264)
T PRK14243        188 LRIEELMHELKE--QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF---DRTEKIFN  248 (264)
T ss_pred             HHHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe---CCHHHHHh
Confidence            467788888854  4899999999999999999999997          444443   57777653

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=98.10  E-value=9.6e-06  Score=59.86  Aligned_cols=50  Identities=18%  Similarity=0.165  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhh-cCEEEEec-CCCcceeecCCchhH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYL-SDRVIVFE-GSPSISTLANAPQNL   58 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~-~driivl~-g~~~~~g~v~tp~~L   58 (107)
                      ..+.++|+++++ .++|||++|||++++..+ ||++++|+ |++...   ++++.+
T Consensus       182 ~~l~~~l~~l~~-~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~---g~~~~~  233 (248)
T PRK09580        182 KIVADGVNSLRD-GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS---GDFTLV  233 (248)
T ss_pred             HHHHHHHHHHHh-CCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEe---CCHHHH
Confidence            467778888864 489999999999999988 99999998 776655   465543

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.09  E-value=8.9e-06  Score=58.70  Aligned_cols=40  Identities=23%  Similarity=0.259  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CC
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GS   45 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~   45 (107)
                      ..+.++|+++.++ |.|+|+||||++++..+||++++|+ |+
T Consensus       173 ~~~~~~l~~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~  213 (214)
T cd03292         173 WEIMNLLKKINKA-GTTVVVATHAKELVDTTRHRVIALERGK  213 (214)
T ss_pred             HHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence            4677888888654 8999999999999999999999998 53

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.09  E-value=9.7e-06  Score=57.48  Aligned_cols=39  Identities=28%  Similarity=0.326  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      ..++++|++++++.|.|+|++|||++++..+||++++|+
T Consensus       137 ~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~  175 (178)
T cd03229         137 REVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLR  175 (178)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEe
Confidence            467788888876557999999999999999999999998

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.09  E-value=5.6e-06  Score=59.83  Aligned_cols=42  Identities=12%  Similarity=0.070  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI   48 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~   48 (107)
                      ..+.++|+++++  +.|+|+||||++++..+|||+++|+ |++..
T Consensus       167 ~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~  209 (211)
T cd03264         167 IRFRNLLSELGE--DRIVILSTHIVEDVESLCNQVAVLNKGKLVF  209 (211)
T ss_pred             HHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence            357788888864  4899999999999999999999998 65543

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.09  E-value=9.5e-06  Score=58.51  Aligned_cols=40  Identities=33%  Similarity=0.406  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CC
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GS   45 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~   45 (107)
                      ..+.++|+++++ .|.|+|++|||++++..+||++++|+ |+
T Consensus       172 ~~l~~~l~~~~~-~~~tvi~~sh~~~~~~~~~d~i~~l~~g~  212 (213)
T cd03262         172 GEVLDVMKDLAE-EGMTMVVVTHEMGFAREVADRVIFMDDGR  212 (213)
T ss_pred             HHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence            457788888875 48999999999999999999999998 54

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.08  E-value=8.6e-06  Score=60.55  Aligned_cols=50  Identities=16%  Similarity=0.127  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|+++++  ++|+|++|||++++..+||++++|+ |++...   ++++++.
T Consensus       186 ~~l~~~l~~~~~--~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~---g~~~~~~  236 (253)
T PRK14261        186 AKIEDLIEDLKK--EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEF---DKTTQIF  236 (253)
T ss_pred             HHHHHHHHHHhh--CceEEEEEcCHHHHHhhCCEEEEEECCEEEEc---CCHHHHH
Confidence            456788888854  5899999999999999999999999 776655   4666654

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.08  E-value=7.8e-06  Score=62.03  Aligned_cols=51  Identities=22%  Similarity=0.305  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|+++++  +.|||+||||++++..+|||+++|+ |++...   ++++++.+
T Consensus       200 ~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~---g~~~~~~~  251 (276)
T PRK14271        200 EKIEEFIRSLAD--RLTVIIVTHNLAQAARISDRAALFFDGRLVEE---GPTEQLFS  251 (276)
T ss_pred             HHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHHh
Confidence            457788888864  4899999999999999999999999 766555   57777654

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.08  E-value=1e-05  Score=57.56  Aligned_cols=40  Identities=18%  Similarity=0.247  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CC
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GS   45 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~   45 (107)
                      ..+.++|+++.++ +.|+|++|||++++..+||++++|+ |+
T Consensus       141 ~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~d~v~~l~~G~  181 (182)
T cd03215         141 AEIYRLIRELADA-GKAVLLISSELDELLGLCDRILVMYEGR  181 (182)
T ss_pred             HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEecCCc
Confidence            4677888888654 8999999999999999999999998 54

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.07  E-value=6.3e-06  Score=66.79  Aligned_cols=45  Identities=16%  Similarity=0.191  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST   50 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g   50 (107)
                      .+++++|+++.++ |.|||+||||++++..+|||+++|+ |+++..+
T Consensus       428 ~~~~~~l~~l~~~-~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~  473 (491)
T PRK10982        428 FEIYQLIAELAKK-DKGIIIISSEMPELLGITDRILVMSNGLVAGIV  473 (491)
T ss_pred             HHHHHHHHHHHHC-CCEEEEECCChHHHHhhCCEEEEEECCEEEEEE
Confidence            4678889988764 8999999999999999999999998 8776543

>PRK13409 putative ATPase RIL; Provisional

Probab=98.07  E-value=1.3e-05  Score=67.05  Aligned_cols=60  Identities=28%  Similarity=0.473  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhhh
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFL   66 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~l   66 (107)
                      ..+.++|+++++  |+|+|+||||++++..+||++++|.|+++..|.+..+....+..+.++
T Consensus       249 ~~l~~~i~~l~~--g~tvIivsHd~~~l~~~~D~v~vl~~~~g~~g~~~~~~~~~~~i~~~~  308 (590)
T PRK13409        249 LNVARLIRELAE--GKYVLVVEHDLAVLDYLADNVHIAYGEPGAYGVVSKPKGVRVGINEYL  308 (590)
T ss_pred             HHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEeCCccccceecchhHHHHhHHHHH
Confidence            457788888864  899999999999999999999999976666554444544443333343

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.07  E-value=6e-06  Score=61.22  Aligned_cols=45  Identities=24%  Similarity=0.397  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST   50 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g   50 (107)
                      .++++++.|..+.|.++++||||+..|.-++||.++|+ |+++.+|
T Consensus       189 RLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~G  234 (258)
T COG4107         189 RLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG  234 (258)
T ss_pred             HHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccc
Confidence            57899999999999999999999999999999999999 8777776

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=98.07  E-value=7.5e-06  Score=76.81  Aligned_cols=54  Identities=15%  Similarity=0.182  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNGM   62 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~   62 (107)
                      ..+.++|+++.++ |+|||++|||++++..+|||+++|+ |+....   |++++++.-|
T Consensus      2107 ~~l~~lL~~l~~~-g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~---Gs~q~Lk~~~ 2161 (2272)
T TIGR01257      2107 RMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVKGAFQCL---GTIQHLKSKF 2161 (2272)
T ss_pred             HHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---CCHHHHHHHh
Confidence            4678888888665 8999999999999999999999998 877776   6888887654

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.07  E-value=7.3e-06  Score=66.74  Aligned_cols=44  Identities=18%  Similarity=0.218  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcce
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIS   49 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~   49 (107)
                      ..++++|+++++ .|.|||+||||++++..+|||+++|+ |++...
T Consensus       446 ~~l~~~l~~l~~-~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~  490 (510)
T PRK09700        446 AEIYKVMRQLAD-DGKVILMVSSELPEIITVCDRIAVFCEGRLTQI  490 (510)
T ss_pred             HHHHHHHHHHHH-CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence            467888998875 49999999999999999999999998 776554

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=98.07  E-value=9.3e-06  Score=59.44  Aligned_cols=50  Identities=26%  Similarity=0.496  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|+++. + +.|+|++|||++++.. ||++++|+ |+....   ++++++.+
T Consensus       175 ~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~---~~~~~~~~  225 (234)
T cd03251         175 RLVQAALERLM-K-NRTTFVIAHRLSTIEN-ADRIVVLEDGKIVER---GTHEELLA  225 (234)
T ss_pred             HHHHHHHHHhc-C-CCEEEEEecCHHHHhh-CCEEEEecCCeEeee---CCHHHHHH
Confidence            46778888885 3 7899999999999976 99999999 776654   56666654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.06  E-value=8.4e-06  Score=61.48  Aligned_cols=52  Identities=31%  Similarity=0.422  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|++++++.+.|+|++|||++++. +||++++|+ |++...   ++++++.+
T Consensus       179 ~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~---g~~~~~~~  231 (271)
T PRK13632        179 REIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQ---GKPKEILN  231 (271)
T ss_pred             HHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEe---cCHHHHhc
Confidence            46788899887654699999999999985 799999998 766655   45655543

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.06  E-value=7.2e-06  Score=66.54  Aligned_cols=45  Identities=22%  Similarity=0.191  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST   50 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g   50 (107)
                      ..++++|++++++ |.|||+||||++++..+||++++|+ |++...+
T Consensus       440 ~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~  485 (500)
T TIGR02633       440 YEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDF  485 (500)
T ss_pred             HHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEE
Confidence            4677888888765 8999999999999999999999998 7766543

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=98.06  E-value=1.1e-05  Score=60.16  Aligned_cols=51  Identities=18%  Similarity=0.243  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-------CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-------GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-------g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|+++++  ++|+|+||||++++..+||++++|+       |++...   ++++++.+
T Consensus       185 ~~l~~~l~~~~~--~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~---~~~~~~~~  242 (258)
T PRK14241        185 LAIEDLINELKQ--DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI---DDTEKIFS  242 (258)
T ss_pred             HHHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec---CCHHHHHh
Confidence            467788888853  5899999999999999999999995       655554   56666543

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.05  E-value=1e-05  Score=58.73  Aligned_cols=40  Identities=23%  Similarity=0.375  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CC
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GS   45 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~   45 (107)
                      ..+.++|++++++.|+|+|++|||++++.. ||++++|+ |+
T Consensus       178 ~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~  218 (221)
T TIGR02211       178 KIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQ  218 (221)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCE
Confidence            467888888876668999999999999865 89999998 54

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=98.05  E-value=1e-05  Score=58.36  Aligned_cols=44  Identities=27%  Similarity=0.329  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHh-hcCEEEEec-CCCcce
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATY-LSDRVIVFE-GSPSIS   49 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~-~~driivl~-g~~~~~   49 (107)
                      .++.++|+++++ .+.|+|++|||++.+.. +||++++|+ |+....
T Consensus       141 ~~l~~~L~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~  186 (200)
T cd03217         141 RLVAEVINKLRE-EGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKS  186 (200)
T ss_pred             HHHHHHHHHHHH-CCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEE
Confidence            567888888865 48999999999999988 799999999 766554

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.04  E-value=1.1e-05  Score=60.69  Aligned_cols=51  Identities=14%  Similarity=0.165  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec---------CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE---------GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~---------g~~~~~g~v~tp~~L~~   60 (107)
                      .++.++|+++. + +.|+|++|||++++..+|||+++|+         |++...   ++++++.+
T Consensus       186 ~~l~~~l~~~~-~-~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~---g~~~~~~~  245 (261)
T PRK14263        186 RRVEELMVELK-K-DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM---GPTAQIFQ  245 (261)
T ss_pred             HHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe---CCHHHHHh
Confidence            46788888884 3 6899999999999999999999994         555544   56666543

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.04  E-value=1.3e-05  Score=56.61  Aligned_cols=39  Identities=28%  Similarity=0.296  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CC
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GS   45 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~   45 (107)
                      .+++++|+++++ .|+|+|+||||++++ .+||++++|+ |+
T Consensus       133 ~~l~~~l~~~~~-~~~tii~~sh~~~~~-~~~d~v~~l~~G~  172 (173)
T cd03246         133 RALNQAIAALKA-AGATRIVIAHRPETL-ASADRILVLEDGR  172 (173)
T ss_pred             HHHHHHHHHHHh-CCCEEEEEeCCHHHH-HhCCEEEEEECCC
Confidence            467888888865 489999999999988 5899999998 53

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.04  E-value=1.1e-05  Score=59.33  Aligned_cols=50  Identities=18%  Similarity=0.315  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++.++|++++  .|.|+|++|||++++. +||++++|+ |++...   ++++++.+
T Consensus       176 ~~l~~~l~~~~--~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~---~~~~~~~~  226 (238)
T cd03249         176 KLVQEALDRAM--KGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQ---GTHDELMA  226 (238)
T ss_pred             HHHHHHHHHhc--CCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEe---CCHHHHhh
Confidence            46778888875  4899999999999997 899999999 776554   45555544

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=98.03  E-value=1.1e-05  Score=59.31  Aligned_cols=50  Identities=22%  Similarity=0.369  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|++++ + |+|+|++|||++++. .||++++|+ |++...   ++++++.+
T Consensus       175 ~~l~~~l~~~~-~-~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~---~~~~~~~~  225 (237)
T cd03252         175 HAIMRNMHDIC-A-GRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQ---GSHDELLA  225 (237)
T ss_pred             HHHHHHHHHhc-C-CCEEEEEeCCHHHHH-hCCEEEEEECCEEEEE---cCHHHHHh
Confidence            46778888885 3 899999999999995 699999998 776665   46666654

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.03  E-value=1.3e-05  Score=59.42  Aligned_cols=50  Identities=20%  Similarity=0.203  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|++++ + +.|+|++|||++++..+||++++|+ |++...   ++++++.
T Consensus       183 ~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~---g~~~~~~  233 (250)
T PRK14266        183 TKIEDLIHKLK-E-DYTIVIVTHNMQQATRVSKYTSFFLNGEIIES---GLTDQIF  233 (250)
T ss_pred             HHHHHHHHHHh-c-CCeEEEEECCHHHHHhhcCEEEEEECCeEEEe---CCHHHHH
Confidence            46788888884 3 7899999999999999999999998 776665   5666664

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.00  E-value=1.6e-05  Score=60.15  Aligned_cols=50  Identities=14%  Similarity=0.175  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec----------CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE----------GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~----------g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|+++++  +.|||++|||++++..+||++++|+          |+++..   ++++++.
T Consensus       198 ~~l~~~L~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~---g~~~~~~  257 (274)
T PRK14265        198 RQVEELCLELKE--QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEF---SPTEQMF  257 (274)
T ss_pred             HHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEe---CCHHHHH
Confidence            467788888853  6899999999999999999999995          544443   5666664

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=98.00  E-value=1.1e-05  Score=66.73  Aligned_cols=56  Identities=14%  Similarity=0.177  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceee---cCCchhHHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTL---ANAPQNLLNG   61 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~---v~tp~~L~~~   61 (107)
                      ..+++++++|.+ .|.++|+|||.|+++..+|||+.||. |+.+..+.   -.+.+++.+.
T Consensus       182 ~~Lf~~ir~Lk~-~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~~~lv~~  241 (500)
T COG1129         182 ERLFDLIRRLKA-QGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELVRL  241 (500)
T ss_pred             HHHHHHHHHHHh-CCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCHHHHHHH
Confidence            457888999964 59999999999999999999999999 87666542   1334555553

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=97.99  E-value=1.1e-05  Score=58.11  Aligned_cols=42  Identities=14%  Similarity=0.152  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHH-HHHhhcCEEEEec-CCCc
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFI-MATYLSDRVIVFE-GSPS   47 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~-~a~~~~driivl~-g~~~   47 (107)
                      ..+.++|+++.++ |+|+|++|||++ ++..+||++++|+ |++.
T Consensus       148 ~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~  191 (194)
T cd03213         148 LQVMSLLRRLADT-GRTIICSIHQPSSEIFELFDKLLLLSQGRVI  191 (194)
T ss_pred             HHHHHHHHHHHhC-CCEEEEEecCchHHHHHhcCEEEEEeCCEEE
Confidence            4677888888654 899999999997 7889999999998 6543

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.99  E-value=1.6e-05  Score=59.69  Aligned_cols=51  Identities=12%  Similarity=0.118  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.++|+++++  +.|+|+||||++++..+||++++|+ |+....   ++++++.+
T Consensus       190 ~~l~~~l~~~~~--~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~---g~~~~~~~  241 (257)
T PRK14246        190 QAIEKLITELKN--EIAIVIVSHNPQQVARVADYVAFLYNGELVEW---GSSNEIFT  241 (257)
T ss_pred             HHHHHHHHHHhc--CcEEEEEECCHHHHHHhCCEEEEEECCEEEEE---CCHHHHHh
Confidence            357778887753  5899999999999999999999998 766655   46666543

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=97.98  E-value=1.3e-05  Score=65.25  Aligned_cols=44  Identities=20%  Similarity=0.261  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcce
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIS   49 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~   49 (107)
                      ..++++|+++++ .|+|+|+||||++++..+||++++|+ |++...
T Consensus       177 ~~l~~~l~~~~~-~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~  221 (501)
T PRK11288        177 EQLFRVIRELRA-EGRVILYVSHRMEEIFALCDAITVFKDGRYVAT  221 (501)
T ss_pred             HHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence            467888888865 48999999999999999999999999 766544

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=97.97  E-value=1.7e-05  Score=57.98  Aligned_cols=41  Identities=20%  Similarity=0.210  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCC
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSP   46 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~   46 (107)
                      ..+.++|++++++.|.|||++|||++++. .||++++|+ |++
T Consensus       183 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~g~i  224 (228)
T PRK10584        183 DKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRLRLVNGQL  224 (228)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEE
Confidence            46788898887666899999999999985 599999998 643

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=97.97  E-value=1.3e-05  Score=58.69  Aligned_cols=43  Identities=12%  Similarity=0.123  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCH-HHHHhhcCEEEEec-CCCcc
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDF-IMATYLSDRVIVFE-GSPSI   48 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl-~~a~~~~driivl~-g~~~~   48 (107)
                      ..+.++|+++.++ +.|+|++||++ +++..+||++++|+ |++..
T Consensus       180 ~~~~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~  224 (226)
T cd03234         180 LNLVSTLSQLARR-NRIVILTIHQPRSDLFRLFDRILLLSSGEIVY  224 (226)
T ss_pred             HHHHHHHHHHHHC-CCEEEEEecCCCHHHHHhCCEEEEEeCCEEEe
Confidence            4677888888654 89999999999 69999999999999 76554

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.93  E-value=3.7e-05  Score=58.27  Aligned_cols=44  Identities=18%  Similarity=0.351  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI   48 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~   48 (107)
                      ..+|++-.++.++.+.|.+||||+|+.|..|.+|.|+|+ |+++.
T Consensus       185 ~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Ivl  229 (263)
T COG1101         185 EFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVL  229 (263)
T ss_pred             HHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEE
Confidence            468899999999999999999999999999999999999 88765

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=97.92  E-value=2.4e-05  Score=57.49  Aligned_cols=45  Identities=18%  Similarity=0.237  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST   50 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g   50 (107)
                      .++.++|++++++.|+|+|++|||++++..+ |++++|+ |++...|
T Consensus       182 ~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~~~  227 (233)
T PRK11629        182 DSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTAEL  227 (233)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEEEe
Confidence            4678888888765689999999999999875 6999998 7665543

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=97.91  E-value=2.3e-05  Score=57.42  Aligned_cols=50  Identities=18%  Similarity=0.287  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|+++++  |+|+|++|||++++.. ||++++|+ |+....   ++++++.+
T Consensus       174 ~~l~~~l~~~~~--~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~---~~~~~~~~  224 (236)
T cd03253         174 REIQAALRDVSK--GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVER---GTHEELLA  224 (236)
T ss_pred             HHHHHHHHHhcC--CCEEEEEcCCHHHHHh-CCEEEEEECCEEEee---CCHHHHhh
Confidence            467788887753  8999999999999965 99999999 766654   45555543

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=97.90  E-value=2.6e-05  Score=73.28  Aligned_cols=62  Identities=19%  Similarity=0.244  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHHHHhhhhhcCeeee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNGMNKFLSLLGITFR   74 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~~   74 (107)
                      ..+.++|+++.  .|+|||++|||+++|..+|||+++|+ |+....   |+++.|++.|..   ++.+++.
T Consensus      1098 ~~l~~lL~~l~--~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~---Gs~~~Lk~~~g~---gy~l~~~ 1160 (2272)
T TIGR01257      1098 RSIWDLLLKYR--SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCS---GTPLFLKNCFGT---GFYLTLV 1160 (2272)
T ss_pred             HHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe---cCHHHHHHhcCC---cEEEEEE
Confidence            46788898884  38999999999999999999999999 877665   689998875522   4445554

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.89  E-value=4.1e-05  Score=55.12  Aligned_cols=42  Identities=31%  Similarity=0.364  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI   48 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~   48 (107)
                      ..+.+.|+++++ .|.|||+||||++++ ..||++++|+ |+...
T Consensus       126 ~~l~~~l~~~~~-~g~tvIivSH~~~~~-~~~d~i~~l~~g~~~~  168 (176)
T cd03238         126 NQLLEVIKGLID-LGNTVILIEHNLDVL-SSADWIIDFGPGSGKS  168 (176)
T ss_pred             HHHHHHHHHHHh-CCCEEEEEeCCHHHH-HhCCEEEEECCCCCCC
Confidence            356777887764 589999999999997 5799999998 54333

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=97.89  E-value=2.8e-05  Score=56.71  Aligned_cols=49  Identities=16%  Similarity=0.418  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      .+++++|+++. + +.|+|+||||++++. .||++++|+ |++...   ++++++.
T Consensus       176 ~~l~~~l~~~~-~-~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~~---~~~~~~~  225 (229)
T cd03254         176 KLIQEALEKLM-K-GRTSIIIAHRLSTIK-NADKILVLDDGKIIEE---GTHDELL  225 (229)
T ss_pred             HHHHHHHHHhc-C-CCEEEEEecCHHHHh-hCCEEEEEeCCeEEEe---CCHHHHH
Confidence            35778888874 3 899999999999986 599999999 766554   4555544

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=97.88  E-value=2e-05  Score=57.15  Aligned_cols=40  Identities=23%  Similarity=0.332  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS   47 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~   47 (107)
                      .+++++|+++++  ++|+|++|||++++ .+||++++|+ |++.
T Consensus       177 ~~l~~~l~~~~~--~~tii~~sH~~~~~-~~~d~v~~l~~g~i~  217 (220)
T cd03245         177 ERLKERLRQLLG--DKTLIIITHRPSLL-DLVDRIIVMDSGRIV  217 (220)
T ss_pred             HHHHHHHHHhcC--CCEEEEEeCCHHHH-HhCCEEEEEeCCeEe
Confidence            467788888864  38999999999987 7999999998 6544

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.88  E-value=2.7e-05  Score=59.93  Aligned_cols=51  Identities=18%  Similarity=0.255  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEE-EEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRV-IVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~dri-ivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|+++++  +.|+|+||||++++..+||++ ++|+ |++...   ++++++.+
T Consensus       237 ~~l~~~L~~~~~--~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~~---g~~~~~~~  289 (305)
T PRK14264        237 SKIEDLIEELAE--EYTVVVVTHNMQQAARISDQTAVFLTGGELVEY---DDTDKIFE  289 (305)
T ss_pred             HHHHHHHHHHhc--CCEEEEEEcCHHHHHHhcCEEEEEecCCEEEEe---CCHHHHHh
Confidence            467888888865  489999999999999999997 5677 877665   46666543

>PLN03211 ABC transporter G-25; Provisional

Probab=97.88  E-value=2.5e-05  Score=66.17  Aligned_cols=52  Identities=13%  Similarity=0.043  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHH-HHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFI-MATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~-~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|+++++ .|+|||++||+++ .+..+||++++|+ |+....   |+++++.+
T Consensus       243 ~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~---G~~~~~~~  296 (659)
T PLN03211        243 YRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFF---GKGSDAMA  296 (659)
T ss_pred             HHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEE---CCHHHHHH
Confidence            578899999976 4999999999998 5889999999999 877776   57777776

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=97.88  E-value=3.3e-05  Score=63.89  Aligned_cols=43  Identities=19%  Similarity=0.237  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI   48 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~   48 (107)
                      .||.++|++++++ |++||++|-|++++..+||||+||+ |++..
T Consensus       438 ~eIy~li~~lA~~-G~ail~iSSElpEll~~~DRIlVm~~Gri~~  481 (500)
T COG1129         438 AEIYRLIRELAAE-GKAILMISSELPELLGLSDRILVMREGRIVG  481 (500)
T ss_pred             HHHHHHHHHHHHC-CCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence            4899999999876 9999999999999999999999999 87665

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=97.85  E-value=3.7e-05  Score=56.02  Aligned_cols=38  Identities=18%  Similarity=0.314  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      .+++++|+++.++.+.|+|++|||++. ..+||++++|+
T Consensus       178 ~~l~~~l~~~~~~~~~tii~~sh~~~~-~~~~d~v~~l~  215 (220)
T TIGR02982       178 RDVVELMQKLAREQGCTILIVTHDNRI-LDVADRIVHME  215 (220)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeCCHHH-HhhCCEEEEEE
Confidence            467888888876668999999999996 57999999998

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=97.85  E-value=2.9e-05  Score=58.04  Aligned_cols=50  Identities=24%  Similarity=0.339  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|+++.  .+.|+|++||+++.+.. |||+++|+ |++...   ++++++.+
T Consensus       193 ~~l~~~l~~~~--~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~~---g~~~~~~~  243 (257)
T cd03288         193 NILQKVVMTAF--ADRTVVTIAHRVSTILD-ADLVLVLSRGILVEC---DTPENLLA  243 (257)
T ss_pred             HHHHHHHHHhc--CCCEEEEEecChHHHHh-CCEEEEEECCEEEEe---CCHHHHHh
Confidence            45677777763  37999999999999976 99999999 777655   57776654

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.85  E-value=3.6e-05  Score=58.70  Aligned_cols=50  Identities=16%  Similarity=0.228  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEE-Eec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVI-VFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~drii-vl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|+++++  +.|+|++|||++++..+|||++ +|+ |++...   ++++++.
T Consensus       217 ~~l~~~L~~~~~--~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~---g~~~~~~  268 (285)
T PRK14254        217 SKIEDLIEELAE--EYTVVIVTHNMQQAARISDKTAVFLTGGELVEF---DDTDKIF  268 (285)
T ss_pred             HHHHHHHHHHhc--CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEe---CCHHHHH
Confidence            467888888864  3799999999999999999975 566 776655   4555553

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=97.79  E-value=3.7e-05  Score=62.25  Aligned_cols=45  Identities=16%  Similarity=0.141  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHh-hcCEEEEec-CCCcce
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATY-LSDRVIVFE-GSPSIS   49 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~-~~driivl~-g~~~~~   49 (107)
                      .+++++|++++++.+.|||+||||++++.. +||++++|+ |++...
T Consensus       438 ~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~  484 (490)
T PRK10938        438 QLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY  484 (490)
T ss_pred             HHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence            578889999976534579999999999987 699999998 776553

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=97.77  E-value=5.4e-05  Score=56.87  Aligned_cols=53  Identities=15%  Similarity=0.253  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           4 LHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++-++++.|.+ .|+.|++..|+..+...+|||.+++. |++.++   |+|+++.+
T Consensus       175 V~dIq~iI~~L~~-rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~---G~p~ei~~  228 (243)
T COG1137         175 VIDIQRIIKHLKD-RGIGVLITDHNVRETLDICDRAYIISDGKVLAE---GSPEEIVN  228 (243)
T ss_pred             HHHHHHHHHHHHh-CCceEEEccccHHHHHhhhheEEEEecCeEEec---CCHHHHhc
Confidence            4678889999965 59999999999999999999999999 999998   58888765

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=97.76  E-value=4.7e-05  Score=54.92  Aligned_cols=42  Identities=17%  Similarity=0.244  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcce
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIS   49 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~   49 (107)
                      ..++++|+++. + |.|+|++|||++++.. ||++++|+ |++...
T Consensus       162 ~~l~~~l~~~~-~-~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~  204 (207)
T cd03369         162 ALIQKTIREEF-T-NSTILTIAHRLRTIID-YDKILVMDAGEVKEY  204 (207)
T ss_pred             HHHHHHHHHhc-C-CCEEEEEeCCHHHHhh-CCEEEEEECCEEEec
Confidence            45778888774 3 8999999999999976 99999998 665443

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.76  E-value=5.6e-05  Score=54.21  Aligned_cols=38  Identities=11%  Similarity=0.079  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHH-HHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFI-MATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~-~a~~~~driivl~   43 (107)
                      ..++++|+++++ .|.|+|++|||++ .+..+||++++|+
T Consensus       145 ~~l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~l~  183 (192)
T cd03232         145 YNIVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLLLLK  183 (192)
T ss_pred             HHHHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEEEEc
Confidence            467788888865 4899999999999 5789999999997

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=7.8e-05  Score=62.31  Aligned_cols=50  Identities=24%  Similarity=0.388  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+++.|.++++  ++|+++|||++..+. -||+|++|+ |+++.+   |++++|.+
T Consensus       493 ~~i~~~l~~l~~--~ktvl~itHrl~~~~-~~D~I~vld~G~l~~~---g~~~~L~~  543 (559)
T COG4988         493 QIILQALQELAK--QKTVLVITHRLEDAA-DADRIVVLDNGRLVEQ---GTHEELSE  543 (559)
T ss_pred             HHHHHHHHHHHh--CCeEEEEEcChHHHh-cCCEEEEecCCceecc---CCHHHHhh
Confidence            357888888875  599999999999985 599999999 888877   68898866

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=97.75  E-value=5.6e-05  Score=55.28  Aligned_cols=50  Identities=10%  Similarity=0.014  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+.++|.+..  .+.|+|++|||++++..+||++++|+ |++...+   +-+.+.+
T Consensus       142 ~~~~~l~~~~--~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~---~~~~~~~  192 (213)
T PRK15177        142 RMQAALACQL--QQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCE---DLAQATA  192 (213)
T ss_pred             HHHHHHHHHh--hCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeC---CHHHHHH
Confidence            3444443332  24689999999999999999999999 8777664   4444433

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.74  E-value=2.5e-05  Score=59.08  Aligned_cols=51  Identities=20%  Similarity=0.199  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..|-++|.+|.  .+.|||+|||+|..|++++|+.++|. |+.+-.   +..+.++.
T Consensus       186 ~kIEeLi~eLk--~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~---g~T~~iF~  237 (253)
T COG1117         186 LKIEELITELK--KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEF---GPTDKIFT  237 (253)
T ss_pred             HHHHHHHHHHH--hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEE---cCHHhhhc
Confidence            34667788886  36899999999999999999999999 877765   45566554

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.73  E-value=0.00011  Score=50.79  Aligned_cols=38  Identities=29%  Similarity=0.439  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      ..+.++|+++.+. +.|++++||+++++..+||++++|+
T Consensus       117 ~~l~~~l~~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~  154 (157)
T cd00267         117 ERLLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLK  154 (157)
T ss_pred             HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence            4677788887655 7899999999999999999999998

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=97.73  E-value=9e-05  Score=54.04  Aligned_cols=38  Identities=11%  Similarity=0.083  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      ..+.++|++++++ +.|+|+||||++++..+||++++++
T Consensus       170 ~~~~~~l~~~~~~-~~tii~itH~~~~~~~~~~~i~~~~  207 (213)
T cd03279         170 EAVATALELIRTE-NRMVGVISHVEELKERIPQRLEVIK  207 (213)
T ss_pred             HHHHHHHHHHHhC-CCEEEEEECchHHHHhhCcEEEEEe
Confidence            4567788888654 8899999999999999999999999

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=97.70  E-value=6.3e-05  Score=53.22  Aligned_cols=40  Identities=20%  Similarity=0.276  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS   47 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~   47 (107)
                      ..++++|+++. + +.|+|++|||++++. .||++++|+ |+..
T Consensus       135 ~~l~~~l~~~~-~-~~tii~~sh~~~~~~-~~d~~~~l~~g~i~  175 (178)
T cd03247         135 RQLLSLIFEVL-K-DKTLIWITHHLTGIE-HMDKILFLENGKII  175 (178)
T ss_pred             HHHHHHHHHHc-C-CCEEEEEecCHHHHH-hCCEEEEEECCEEE
Confidence            45678888774 3 799999999999986 699999998 6544

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.69  E-value=0.00011  Score=50.74  Aligned_cols=34  Identities=21%  Similarity=0.333  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      .+.++|+++    +.|++++|||++++..+||++++|+
T Consensus       108 ~l~~~l~~~----~~til~~th~~~~~~~~~d~v~~l~  141 (144)
T cd03221         108 ALEEALKEY----PGTVILVSHDRYFLDQVATKIIELE  141 (144)
T ss_pred             HHHHHHHHc----CCEEEEEECCHHHHHHhCCEEEEEe
Confidence            344555544    5799999999999999999999998

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=97.68  E-value=9e-05  Score=67.34  Aligned_cols=53  Identities=19%  Similarity=0.043  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCH-HHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDF-IMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl-~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++++.|++++++.|+|+|+++|+. +.+..++|++++|+ |+++..   |+++++.+
T Consensus       246 ~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~---G~~~~~~~  300 (1394)
T TIGR00956       246 LEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYF---GPADKAKQ  300 (1394)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEE---CCHHHHHH
Confidence            5788999999877799999999996 78999999999999 887776   57777665

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=97.68  E-value=7e-05  Score=55.76  Aligned_cols=43  Identities=16%  Similarity=0.252  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI   48 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~   48 (107)
                      .++|+++.++++. |+||+++|||.+.+..+..|++.++ |+...
T Consensus       174 ~~im~lfeeinr~-GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~  217 (223)
T COG2884         174 WEIMRLFEEINRL-GTTVLMATHDLELVNRMRHRVLALEDGRLVR  217 (223)
T ss_pred             HHHHHHHHHHhhc-CcEEEEEeccHHHHHhccCcEEEEeCCEEEe
Confidence            5899999999864 9999999999999999999999999 87654

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.67  E-value=0.0001  Score=56.23  Aligned_cols=36  Identities=25%  Similarity=0.384  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF   42 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl   42 (107)
                      ..++++|+++.+ .|.|+|+||||++++. .||+++.|
T Consensus       209 ~~l~~~L~~l~~-~g~tvIiitH~~~~i~-~aD~ii~L  244 (261)
T cd03271         209 KKLLEVLQRLVD-KGNTVVVIEHNLDVIK-CADWIIDL  244 (261)
T ss_pred             HHHHHHHHHHHh-CCCEEEEEeCCHHHHH-hCCEEEEe
Confidence            467788888865 4899999999999985 79999999

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=97.67  E-value=0.00011  Score=51.78  Aligned_cols=36  Identities=28%  Similarity=0.474  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      .++.++|+++. + ++|+|++|||++++.. ||++++|+
T Consensus       133 ~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~~~~l~  168 (171)
T cd03228         133 ALILEALRALA-K-GKTVIVIAHRLSTIRD-ADRIIVLD  168 (171)
T ss_pred             HHHHHHHHHhc-C-CCEEEEEecCHHHHHh-CCEEEEEc
Confidence            46778888874 3 6999999999999987 99999998

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.67  E-value=9e-05  Score=53.92  Aligned_cols=38  Identities=18%  Similarity=0.270  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      ..+.++|+++.+ .|.|+|++|||++++..+||++++++
T Consensus       174 ~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~~~i~~l~  211 (214)
T PRK13543        174 TLVNRMISAHLR-GGGAALVTTHGAYAAPPVRTRMLTLE  211 (214)
T ss_pred             HHHHHHHHHHHh-CCCEEEEEecChhhhhhhcceEEEEe
Confidence            356778888765 48999999999999999999999987

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=97.67  E-value=0.0001  Score=54.07  Aligned_cols=38  Identities=24%  Similarity=0.335  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      ..+.++|++++++.|.|+|++|||++++. +||++++|+
T Consensus       174 ~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~  211 (225)
T PRK10247        174 HNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQ  211 (225)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEe
Confidence            46778888887766899999999999995 699999996

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=97.67  E-value=8.4e-05  Score=62.26  Aligned_cols=52  Identities=21%  Similarity=0.212  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHH-HHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFI-MATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~-~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+++.|++++++ |+|+|+++|++. .+..+||++++|+ |+.+..   |+++++.+
T Consensus       203 ~~l~~~L~~l~~~-g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~---G~~~~~~~  256 (617)
T TIGR00955       203 YSVVQVLKGLAQK-GKTIICTIHQPSSELFELFDKIILMAEGRVAYL---GSPDQAVP  256 (617)
T ss_pred             HHHHHHHHHHHhC-CCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEE---CCHHHHHH
Confidence            4788999999764 999999999995 7899999999999 877776   57777765

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=97.66  E-value=9.4e-05  Score=53.86  Aligned_cols=38  Identities=16%  Similarity=0.170  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      ..+.++|++++++ |+|+|+||||++++..+||+++.+.
T Consensus       186 ~~l~~~l~~~~~~-g~tii~vsH~~~~~~~~~d~i~~~~  223 (224)
T TIGR02324       186 QVVVELIAEAKAR-GAALIGIFHDEEVRELVADRVMDVT  223 (224)
T ss_pred             HHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcceeEecC
Confidence            4677888888654 8999999999999999999998864

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.64  E-value=9.3e-05  Score=56.43  Aligned_cols=53  Identities=19%  Similarity=0.350  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++.++|.++++..|.||++++||+.....|||++-||. |+-+..   +..+++.+
T Consensus       195 ~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ES---a~~e~l~~  248 (330)
T COG4170         195 AQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVES---APSEELVT  248 (330)
T ss_pred             HHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccc---cchhHHhc
Confidence            578999999999889999999999999999999999999 876654   34455544

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=97.64  E-value=0.00011  Score=60.22  Aligned_cols=48  Identities=19%  Similarity=0.245  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc-ceeecCCchhHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS-ISTLANAPQNLLN   60 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~-~~g~v~tp~~L~~   60 (107)
                      .+.++|+++    +.|||+||||++++..+|||+++|+ |++. ..   ++++++.+
T Consensus       476 ~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~---g~~~~~~~  525 (530)
T PRK15064        476 SLNMALEKY----EGTLIFVSHDREFVSSLATRIIEITPDGVVDFS---GTYEEYLR  525 (530)
T ss_pred             HHHHHHHHC----CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcC---CCHHHHHH
Confidence            445555544    4599999999999999999999998 7665 44   46555543

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=97.62  E-value=0.00012  Score=53.27  Aligned_cols=38  Identities=18%  Similarity=0.381  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CC
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GS   45 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~   45 (107)
                      ..+.++|+++++  +.|+|++|||++++. .||++++|+ |+
T Consensus       187 ~~l~~~l~~~~~--~~tii~~sh~~~~~~-~~d~i~~l~~g~  225 (226)
T cd03248         187 QQVQQALYDWPE--RRTVLVIAHRLSTVE-RADQILVLDGGR  225 (226)
T ss_pred             HHHHHHHHHHcC--CCEEEEEECCHHHHH-hCCEEEEecCCc
Confidence            356788888753  589999999999996 599999998 53

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.62  E-value=9.3e-05  Score=54.69  Aligned_cols=42  Identities=19%  Similarity=0.165  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS   47 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~   47 (107)
                      ..|.+++-.++++.|+|.|+||||..+|.+ |+|.+-|. |++.
T Consensus       183 ~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~  225 (228)
T COG4181         183 DKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLV  225 (228)
T ss_pred             HHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceec
Confidence            357889999999999999999999999976 89999887 7654

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=97.62  E-value=5e-05  Score=56.96  Aligned_cols=43  Identities=30%  Similarity=0.375  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST   50 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g   50 (107)
                      ..-++|++++.  +.+|++|.|||.++..+|++|-||+ |.+.+.|
T Consensus       185 ~taeLl~~la~--~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EG  228 (249)
T COG4674         185 KTAELLKSLAG--KHSILVVEHDMGFVREIADKVTVLHEGSVLAEG  228 (249)
T ss_pred             HHHHHHHHHhc--CceEEEEeccHHHHHHhhheeEEEeccceeecc
Confidence            45678888874  4799999999999999999999999 9888885

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=97.61  E-value=0.00011  Score=64.50  Aligned_cols=50  Identities=30%  Similarity=0.333  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe------c-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF------E-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl------~-g~~~~~g~v~tp~~L~   59 (107)
                      ..++++|+++.++ |.|||+|+||++++. +||++++|      + |+++..   ++++++.
T Consensus       526 ~~L~~~L~~L~~~-G~TVIvVeHd~~~i~-~aD~vi~LgpgaG~~~G~Iv~~---g~~~el~  582 (924)
T TIGR00630       526 ERLINTLKRLRDL-GNTVIVVEHDEETIR-AADYVIDIGPGAGIHGGEVVAS---GTPEEIL  582 (924)
T ss_pred             HHHHHHHHHHHhC-CCEEEEEECCHHHHh-hCCEEEEecccccCCCCEEeec---cCHHHHh
Confidence            4678889998654 999999999999985 89999999      4 555544   5777764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=97.59  E-value=0.00016  Score=59.31  Aligned_cols=40  Identities=10%  Similarity=0.186  Sum_probs=32.3

Q ss_pred             hcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc-ceeecCCchhHH
Q psy1687          17 HAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS-ISTLANAPQNLL   59 (107)
Q Consensus        17 ~~~~tvi~vTHDl~~a~~~~driivl~-g~~~-~~g~v~tp~~L~   59 (107)
                      +.|+|||+||||++++..+||++++|+ |++. ..   +++++..
T Consensus       200 ~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~---g~~~~~~  241 (530)
T PRK15064        200 ERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYP---GNYDEYM  241 (530)
T ss_pred             hCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEec---CCHHHHH
Confidence            458999999999999999999999999 7663 34   4555543

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=97.59  E-value=0.00013  Score=64.32  Aligned_cols=51  Identities=22%  Similarity=0.286  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe------c-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF------E-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl------~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|++|.+ .|.|||+|+||++++. .||++++|      + |+++..   ++++++..
T Consensus       528 ~~L~~~L~~L~~-~G~TVIvVeH~~~~i~-~aD~vi~LgpgaG~~~G~iv~~---g~~~e~~~  585 (943)
T PRK00349        528 DRLIETLKHLRD-LGNTLIVVEHDEDTIR-AADYIVDIGPGAGVHGGEVVAS---GTPEEIMK  585 (943)
T ss_pred             HHHHHHHHHHHh-CCCEEEEEeCCHHHHH-hCCEEEEeccccCCCCCEEeec---cCHHHHhc
Confidence            467888998864 5999999999999985 69999999      5 555554   57777643

>PLN03140 ABC transporter G family member; Provisional

Probab=97.58  E-value=0.00015  Score=66.41  Aligned_cols=62  Identities=13%  Similarity=0.180  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCH-HHHHhhcCEEEEec-CCCcceeecCCchhHHHHHHhhhhhcCeee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDF-IMATYLSDRVIVFE-GSPSISTLANAPQNLLNGMNKFLSLLGITF   73 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl-~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~   73 (107)
                      .++++.|++++++.|+|+|+++|+. +++..++|++++|+ |+++..   |+++++.+    +++.++..-
T Consensus       373 ~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~---G~~~~~~~----yF~~lGf~c  436 (1470)
T PLN03140        373 YQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQ---GPRDHILE----FFESCGFKC  436 (1470)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEe---CCHHHHHH----HHHHcCCCC
Confidence            5788999999876799999999996 68899999999999 888777   57777765    455555433

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=97.55  E-value=0.00016  Score=52.40  Aligned_cols=42  Identities=21%  Similarity=0.248  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcce
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIS   49 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~   49 (107)
                      ..+.++|+++.+  +.|+|++|||++++.. ||++++|+ |+....
T Consensus       176 ~~l~~~l~~~~~--~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~  218 (221)
T cd03244         176 ALIQKTIREAFK--DCTVLTIAHRLDTIID-SDRILVLDKGRVVEF  218 (221)
T ss_pred             HHHHHHHHHhcC--CCEEEEEeCCHHHHhh-CCEEEEEECCeEEec
Confidence            467788887743  6899999999999975 99999998 765544

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.49  E-value=0.00027  Score=51.09  Aligned_cols=43  Identities=26%  Similarity=0.182  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEE-EeCCHHHHHhhcCEEEEec-CCCc
Q psy1687           5 HLTLQVIKRFILHAKKTGFV-VEHDFIMATYLSDRVIVFE-GSPS   47 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~-vTHDl~~a~~~~driivl~-g~~~   47 (107)
                      ..++++|++++++.+.|+|+ ++|+.+++..+||++++|+ |++.
T Consensus       155 ~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~  199 (202)
T cd03233         155 LEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI  199 (202)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEE
Confidence            46788888887654666555 5677899999999999999 6544

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=97.46  E-value=0.00031  Score=53.80  Aligned_cols=48  Identities=17%  Similarity=0.278  Sum_probs=35.3

Q ss_pred             HHHHH-HHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           7 TLQVI-KRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         7 i~~ll-~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      +++.+ +++.  .+.|+|++|||++++ .+||++++|+ |++...   ++++++.+
T Consensus       198 l~~~ll~~~~--~~~tIiiisH~~~~~-~~~d~i~~l~~G~i~~~---g~~~~~~~  247 (282)
T cd03291         198 IFESCVCKLM--ANKTRILVTSKMEHL-KKADKILILHEGSSYFY---GTFSELQS  247 (282)
T ss_pred             HHHHHHHHhh--CCCEEEEEeCChHHH-HhCCEEEEEECCEEEEE---CCHHHHHh
Confidence            44433 3443  378999999999998 5899999999 776655   56666654

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>KOG0059|consensus

Probab=97.45  E-value=0.00016  Score=63.20  Aligned_cols=53  Identities=21%  Similarity=0.243  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNGM   62 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~   62 (107)
                      .+-+++.++.+. |+.+|+.||.|++|..+|||+.+|. |+..+.   |+|++|++-|
T Consensus       736 ~lW~ii~~~~k~-g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ci---Gs~q~LKsrf  789 (885)
T KOG0059|consen  736 HLWDIIARLRKN-GKAIILTSHSMEEAEALCTRTAIMVIGQLRCI---GSPQELKSRY  789 (885)
T ss_pred             HHHHHHHHHHhc-CCEEEEEcCCHHHHHHHhhhhheeecCeeEEe---cChHHHHhhc
Confidence            466788888654 6699999999999999999999998 988887   6999998644

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=97.41  E-value=0.00033  Score=50.36  Aligned_cols=36  Identities=22%  Similarity=0.480  Sum_probs=28.5

Q ss_pred             HHHH-HHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           6 LTLQ-VIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         6 ~i~~-ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      .+++ +++++.++ |.|+|++||+++.+.. ||++++|+
T Consensus       165 ~l~~~ll~~~~~~-~~tvi~~sh~~~~~~~-~d~i~~l~  201 (204)
T cd03250         165 HIFENCILGLLLN-NKTRILVTHQLQLLPH-ADQIVVLD  201 (204)
T ss_pred             HHHHHHHHHhccC-CCEEEEEeCCHHHHhh-CCEEEEEe
Confidence            3455 34445443 8999999999999988 99999998

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=97.41  E-value=0.00032  Score=59.13  Aligned_cols=47  Identities=15%  Similarity=0.222  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc-ceeecCCchhH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS-ISTLANAPQNL   58 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~-~~g~v~tp~~L   58 (107)
                      ..+.++|+++    +.|||+||||++++..+||++++|+ |++. ..   |++++.
T Consensus       467 ~~l~~~L~~~----~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~---g~~~~~  515 (638)
T PRK10636        467 QALTEALIDF----EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFD---GDLEDY  515 (638)
T ss_pred             HHHHHHHHHc----CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcC---CCHHHH
Confidence            4556666655    3499999999999999999999998 7654 34   455554

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=97.41  E-value=0.00031  Score=57.83  Aligned_cols=50  Identities=18%  Similarity=0.288  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+++.|+++.  .++|+|+|||+++.+ ..||+|++|+ |++...   |++++|.+
T Consensus       517 ~~i~~~l~~~~--~~~tvI~VtHr~~~~-~~~D~Ii~l~~g~i~e~---g~~~~l~~  567 (582)
T PRK11176        517 RAIQAALDELQ--KNRTSLVIAHRLSTI-EKADEILVVEDGEIVER---GTHAELLA  567 (582)
T ss_pred             HHHHHHHHHHh--CCCEEEEEecchHHH-HhCCEEEEEECCEEEEe---CCHHHHHh
Confidence            35667777664  379999999999876 5699999999 766655   68888775

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=97.40  E-value=0.00032  Score=65.25  Aligned_cols=51  Identities=20%  Similarity=0.352  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-------CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-------GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-------g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|++++++ |.|||+||||++++ .+||++++|.       |+++..   |+|+++..
T Consensus       849 ~~Ll~lL~~L~~~-G~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~~---Gtpeel~~  906 (1809)
T PRK00635        849 KALIYVLQSLTHQ-GHTVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLLAS---CSPEELIH  906 (1809)
T ss_pred             HHHHHHHHHHHhc-CCEEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEEe---CCHHHHHh
Confidence            5678888888754 99999999999999 8999999994       334444   68888765

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.00022  Score=59.58  Aligned_cols=49  Identities=24%  Similarity=0.254  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      +++++|..-+  .|||+|+|||++..+ ..||||+||+ |+.+.+   |++.+|..
T Consensus       512 ~vL~ll~~~~--~~kTll~vTHrL~~l-e~~drIivl~~Gkiie~---G~~~~Ll~  561 (573)
T COG4987         512 QVLALLFEHA--EGKTLLMVTHRLRGL-ERMDRIIVLDNGKIIEE---GTHAELLA  561 (573)
T ss_pred             HHHHHHHHHh--cCCeEEEEecccccH-hhcCEEEEEECCeeeec---CCHHhhhc
Confidence            4566664433  589999999999998 6699999999 877777   58888776

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.38  E-value=0.00039  Score=57.48  Aligned_cols=50  Identities=20%  Similarity=0.262  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.+.|+++.  .++|+|+|||+++... .||+|++|+ |+....   |++++|.+
T Consensus       513 ~~i~~~l~~~~--~~~tvIivtHr~~~l~-~~D~ii~l~~G~i~~~---G~~~~L~~  563 (592)
T PRK10790        513 QAIQQALAAVR--EHTTLVVIAHRLSTIV-EADTILVLHRGQAVEQ---GTHQQLLA  563 (592)
T ss_pred             HHHHHHHHHHh--CCCEEEEEecchHHHH-hCCEEEEEECCEEEEE---cCHHHHHh
Confidence            35667777764  3689999999998865 599999999 776655   68888875

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=97.35  E-value=0.0004  Score=61.25  Aligned_cols=51  Identities=22%  Similarity=0.369  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe------c-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF------E-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl------~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|+++.+ .|.|||+||||++++. .||+++.|      + |+++..   |+|+++.+
T Consensus       870 ~~L~~~L~~l~~-~G~TVIiitH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~~---Gt~~el~~  927 (943)
T PRK00349        870 RKLLEVLHRLVD-KGNTVVVIEHNLDVIK-TADWIIDLGPEGGDGGGEIVAT---GTPEEVAK  927 (943)
T ss_pred             HHHHHHHHHHHh-CCCEEEEEecCHHHHH-hCCEEEEecCCcCCCCCEEEEe---CCHHHHHh
Confidence            467788888864 4899999999999984 79999999      3 555554   68888765

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=97.35  E-value=0.00042  Score=58.47  Aligned_cols=49  Identities=29%  Similarity=0.382  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++.|+++.  .++|+|+|||+++.+ ..||+|++|+ |++...   |++++|.+
T Consensus       639 ~i~~~l~~~~--~~~T~iiItHrl~~~-~~~D~iivl~~G~i~e~---G~~~eLl~  688 (694)
T TIGR03375       639 RFKDRLKRWL--AGKTLVLVTHRTSLL-DLVDRIIVMDNGRIVAD---GPKDQVLE  688 (694)
T ss_pred             HHHHHHHHHh--CCCEEEEEecCHHHH-HhCCEEEEEeCCEEEee---CCHHHHHH
Confidence            4666777664  379999999999986 6899999999 776655   68888765

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=97.34  E-value=0.00047  Score=49.39  Aligned_cols=36  Identities=31%  Similarity=0.289  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF   42 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl   42 (107)
                      ..+.++|+++.++ |.|+|++|||++.+ .+||++++|
T Consensus       171 ~~l~~~l~~~~~~-~~tii~~sh~~~~~-~~~d~i~~l  206 (206)
T TIGR03608       171 DEVLDLLLELNDE-GKTIIIVTHDPEVA-KQADRVIEL  206 (206)
T ss_pred             HHHHHHHHHHHhc-CCEEEEEeCCHHHH-hhcCEEEeC
Confidence            4677888888654 89999999999976 589999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=97.32  E-value=0.00061  Score=56.34  Aligned_cols=37  Identities=16%  Similarity=0.243  Sum_probs=29.8

Q ss_pred             HHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687           7 TLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS   47 (107)
Q Consensus         7 i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~   47 (107)
                      +.++|+++    +.|||+||||++++..+||++++|+ |++.
T Consensus       202 l~~~L~~~----~~tviiisHd~~~~~~~~d~i~~l~~g~i~  239 (556)
T PRK11819        202 LEQFLHDY----PGTVVAVTHDRYFLDNVAGWILELDRGRGI  239 (556)
T ss_pred             HHHHHHhC----CCeEEEEeCCHHHHHhhcCeEEEEeCCEEE
Confidence            34444443    4599999999999999999999999 7654

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=97.32  E-value=0.00049  Score=56.51  Aligned_cols=50  Identities=18%  Similarity=0.178  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++.|+++.. .++|+|++||+++.+ ..||++++|+ |+....   |+++++.+
T Consensus       492 ~i~~~l~~~~~-~~~tvi~ith~~~~~-~~~d~i~~l~~G~i~~~---g~~~~l~~  542 (544)
T TIGR01842       492 ALANAIKALKA-RGITVVVITHRPSLL-GCVDKILVLQDGRIARF---GERDEVLA  542 (544)
T ss_pred             HHHHHHHHHhh-CCCEEEEEeCCHHHH-HhCCEEEEEECCEEEee---CCHHHHhh
Confidence            56677777643 479999999999975 6799999999 776655   57776643

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=97.32  E-value=0.00076  Score=56.08  Aligned_cols=60  Identities=20%  Similarity=0.305  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH---HHhhhhhcCe
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG---MNKFLSLLGI   71 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~---~~~~l~~~~i   71 (107)
                      .+.+.|+++.  .++|+|+|||+++.+ ..||++++|+ |++...   |+.+++.+.   |..+.+....
T Consensus       509 ~i~~~l~~~~--~~~tvI~isH~~~~~-~~~d~i~~l~~G~i~~~---g~~~~l~~~~~~y~~l~~~~~~  572 (585)
T TIGR01192       509 RVKNAIDALR--KNRTTFIIAHRLSTV-RNADLVLFLDQGRLIEK---GSFQELIQKDGRFYKLLRRSGL  572 (585)
T ss_pred             HHHHHHHHHh--CCCEEEEEEcChHHH-HcCCEEEEEECCEEEEE---CCHHHHHHCCChHHHHHHhCcc
Confidence            4566776663  379999999999998 5599999999 766655   688888753   4444444433

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=97.31  E-value=0.00043  Score=58.45  Aligned_cols=39  Identities=23%  Similarity=0.289  Sum_probs=32.9

Q ss_pred             cCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687          18 AKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus        18 ~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++|+|+|||+++.+.. ||||++|+ |+++..   |++++|.+
T Consensus       661 ~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~~---G~~~~Ll~  700 (710)
T TIGR03796       661 RGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQR---GTHEELWA  700 (710)
T ss_pred             cCCEEEEEecCHHHHHh-CCEEEEEeCCEEEEe---cCHHHHHH
Confidence            48999999999998755 99999999 777665   68888875

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=97.31  E-value=0.00065  Score=47.75  Aligned_cols=34  Identities=26%  Similarity=0.305  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecC
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEG   44 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g   44 (107)
                      .+.++|+++    +.|+|++|||++.+ .+||++++|++
T Consensus       129 ~l~~~l~~~----~~tiiivsh~~~~~-~~~d~i~~l~~  162 (166)
T cd03223         129 RLYQLLKEL----GITVISVGHRPSLW-KFHDRVLDLDG  162 (166)
T ss_pred             HHHHHHHHh----CCEEEEEeCChhHH-hhCCEEEEEcC
Confidence            344455443    68999999999876 69999999984

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.29  E-value=0.00037  Score=51.29  Aligned_cols=44  Identities=23%  Similarity=0.281  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST   50 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g   50 (107)
                      .+.++|++|+. .|+|-++|||.++.|...+.+++.|. |+++..|
T Consensus       179 qvv~iikel~~-tgitqvivthev~va~k~as~vvyme~g~ive~g  223 (242)
T COG4161         179 QIVSIIKELAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQG  223 (242)
T ss_pred             HHHHHHHHHHh-cCceEEEEEeehhHHHhhhhheEeeecCeeEeec
Confidence            57789999965 69999999999999999999999999 8888776

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=97.29  E-value=0.00066  Score=56.03  Aligned_cols=38  Identities=16%  Similarity=0.226  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS   47 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~   47 (107)
                      .+.++|+++    +.|||+||||++++..+||++++|+ |++.
T Consensus       199 ~l~~~L~~~----~~tvIiisHd~~~~~~~~d~v~~l~~g~i~  237 (552)
T TIGR03719       199 WLEQHLQEY----PGTVVAVTHDRYFLDNVAGWILELDRGRGI  237 (552)
T ss_pred             HHHHHHHhC----CCeEEEEeCCHHHHHhhcCeEEEEECCEEE
Confidence            344454443    4699999999999999999999999 7654

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.28  E-value=0.0006  Score=56.29  Aligned_cols=49  Identities=18%  Similarity=0.215  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+.+.|+++.  .++|+|+|||+++.+ ..||+|++|+ |++...   |+.++|.+
T Consensus       523 ~i~~~l~~~~--~~~TvIiItHrl~~i-~~aD~Iivl~~G~i~e~---G~~~eL~~  572 (588)
T PRK11174        523 LVMQALNAAS--RRQTTLMVTHQLEDL-AQWDQIWVMQDGQIVQQ---GDYAELSQ  572 (588)
T ss_pred             HHHHHHHHHh--CCCEEEEEecChHHH-HhCCEEEEEeCCeEeec---CCHHHHHh
Confidence            4566666664  479999999999876 5699999999 777665   68888875

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=97.27  E-value=0.00055  Score=57.80  Aligned_cols=50  Identities=24%  Similarity=0.408  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+++.|+++.  .++|+|+|||+++.+. .||++++|+ |++...   |++++|.+
T Consensus       630 ~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~ii~l~~G~i~~~---g~~~~l~~  680 (694)
T TIGR01846       630 ALIMRNMREIC--RGRTVIIIAHRLSTVR-ACDRIIVLEKGQIAES---GRHEELLA  680 (694)
T ss_pred             HHHHHHHHHHh--CCCEEEEEeCChHHHH-hCCEEEEEeCCEEEEe---CCHHHHHH
Confidence            35667777763  4799999999999885 599999999 777665   68888765

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=97.25  E-value=0.00057  Score=60.22  Aligned_cols=49  Identities=24%  Similarity=0.392  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe------c-CCCcceeecCCchhH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF------E-GSPSISTLANAPQNL   58 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl------~-g~~~~~g~v~tp~~L   58 (107)
                      ..++++|+++.+ .|.|+|++|||++++ ..||++++|      + |+++..   |+|+++
T Consensus       868 ~~L~~~L~~l~~-~G~TVIvi~H~~~~i-~~aD~ii~Lgp~~G~~gG~iv~~---G~~~~l  923 (924)
T TIGR00630       868 KKLLEVLQRLVD-QGNTVVVIEHNLDVI-KTADYIIDLGPEGGDGGGTIVAS---GTPEEV  923 (924)
T ss_pred             HHHHHHHHHHHh-CCCEEEEEeCCHHHH-HhCCEEEEecCCccCCCCEEEEe---CCHHHh
Confidence            467788888865 489999999999998 579999999      3 545444   566654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=97.25  E-value=0.00052  Score=57.83  Aligned_cols=47  Identities=21%  Similarity=0.377  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++.|+++    ++|+|+|||+++.+. .||+|++|+ |++...   |++++|.+
T Consensus       626 ~i~~~L~~~----~~T~IiItHr~~~i~-~~D~Iivl~~G~iv~~---G~~~~Ll~  673 (686)
T TIGR03797       626 IVSESLERL----KVTRIVIAHRLSTIR-NADRIYVLDAGRVVQQ---GTYDELMA  673 (686)
T ss_pred             HHHHHHHHh----CCeEEEEecChHHHH-cCCEEEEEECCEEEEE---CCHHHHHh
Confidence            344444443    689999999998875 599999999 777665   68888765

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=97.23  E-value=0.00072  Score=55.98  Aligned_cols=49  Identities=20%  Similarity=0.395  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++.|+++.  .++|+|+|||+++.+ ..||++++|+ |++...   |+++++.+
T Consensus       509 ~i~~~l~~~~--~~~tvIiitHr~~~~-~~~D~ii~l~~G~i~~~---g~~~~l~~  558 (588)
T PRK13657        509 KVKAALDELM--KGRTTFIIAHRLSTV-RNADRILVFDNGRVVES---GSFDELVA  558 (588)
T ss_pred             HHHHHHHHHh--cCCEEEEEEecHHHH-HhCCEEEEEECCEEEEe---CCHHHHHH
Confidence            4566666653  379999999999886 6799999998 766654   68888865

>KOG0063|consensus

Probab=97.21  E-value=0.0008  Score=55.55  Aligned_cols=90  Identities=29%  Similarity=0.405  Sum_probs=67.6

Q ss_pred             HHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhhhhhcC----eeeeeCCCCCccee
Q psy1687           9 QVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLG----ITFRRDPNNFRPRI   84 (107)
Q Consensus         9 ~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~l~~~~----i~~~~~~~~~~~~i   84 (107)
                      ..|+.+.. .+.-+|+|.||+.....++|-+.++.|.+++.|-+.-|-.+.++.|.|+.++.    .+|+....  ...+
T Consensus       254 ~~IRsl~~-p~~YiIVVEHDLsVLDylSDFiCcLYGvp~aYGVVT~Pfsvr~giniFl~g~ipten~rfR~~~l--~f~~  330 (592)
T KOG0063|consen  254 ITIRSLIN-PDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVTMPFSVREGINIFLDGLIPTENLRFRPECL--VFLA  330 (592)
T ss_pred             HHHHHhhC-CCCeEEEEEeechHHHhhhcceeEEecCCccceEEEeccchhhhhhhhhhccCCcccccccchhh--eeee
Confidence            45666654 37899999999999999999999999999999988889999999888988875    55544332  2222


Q ss_pred             eeCCChhhHHHHHhCceeecc
Q psy1687          85 NKNNSVKDCEQKRAGQYFFYE  105 (107)
Q Consensus        85 ~~~~~~~~~~~k~~~~~~~~~  105 (107)
                      ....+.   + |++++|-|-.
T Consensus       331 ~~~~~~---e-k~~~~y~Yp~  347 (592)
T KOG0063|consen  331 SDLSSE---D-RRTGRYSYPK  347 (592)
T ss_pred             ccccch---h-hhhheeccCc
Confidence            222222   4 8999997643

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=97.20  E-value=0.00076  Score=55.60  Aligned_cols=50  Identities=22%  Similarity=0.434  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      .+.+.++++.  .++|+++|+|.++.+.. ||+|+||+ |++...   |++++|...
T Consensus       503 ~I~~~l~~l~--~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~---G~h~eLl~~  553 (567)
T COG1132         503 LIQDALKKLL--KGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVER---GTHEELLAK  553 (567)
T ss_pred             HHHHHHHHHh--cCCEEEEEeccHhHHHh-CCEEEEEECCEEEEe---cCHHHHHHc
Confidence            4566666664  36799999999988877 99999999 876655   799999873

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.18  E-value=0.00091  Score=55.46  Aligned_cols=49  Identities=22%  Similarity=0.307  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+.+.|+++.  .++|+|+|||+++.+. .||++++|+ |++...   |+.++|.+
T Consensus       513 ~i~~~l~~~~--~~~tviiitHr~~~~~-~~d~i~~l~~G~i~~~---g~~~~l~~  562 (574)
T PRK11160        513 QILELLAEHA--QNKTVLMITHRLTGLE-QFDRICVMDNGQIIEQ---GTHQELLA  562 (574)
T ss_pred             HHHHHHHHHc--CCCEEEEEecChhHHH-hCCEEEEEeCCeEEEe---CCHHHHHh
Confidence            4566666664  3799999999999875 599999999 777665   68888765

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=97.18  E-value=0.0014  Score=54.19  Aligned_cols=35  Identities=17%  Similarity=0.343  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      ..++++|+++    +.|||+||||++++..+||++++|+
T Consensus       480 ~~l~~~l~~~----~~~viivsHd~~~~~~~~d~i~~l~  514 (552)
T TIGR03719       480 RALEEALLEF----AGCAVVISHDRWFLDRIATHILAFE  514 (552)
T ss_pred             HHHHHHHHHC----CCeEEEEeCCHHHHHHhCCEEEEEE
Confidence            3556666655    2489999999999999999999998

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=97.18  E-value=0.00075  Score=56.98  Aligned_cols=44  Identities=20%  Similarity=0.263  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST   50 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g   50 (107)
                      .++.++|+++++ .|.|+|++||+++.+. .||++++|+ |+....|
T Consensus       181 ~~l~~ll~~l~~-~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g  225 (648)
T PRK10535        181 EEVMAILHQLRD-RGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNP  225 (648)
T ss_pred             HHHHHHHHHHHh-cCCEEEEECCCHHHHH-hCCEEEEEECCEEEeec
Confidence            567888888865 4899999999999885 699999999 8777665

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=97.17  E-value=0.00079  Score=56.95  Aligned_cols=48  Identities=25%  Similarity=0.347  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++.|+++   .++|+|+|||+++.+ ..||+|++|+ |++...   |+.++|.+
T Consensus       649 ~i~~~L~~~---~~~T~IiitHr~~~~-~~~D~i~~l~~G~i~~~---G~~~~L~~  697 (708)
T TIGR01193       649 KIVNNLLNL---QDKTIIFVAHRLSVA-KQSDKIIVLDHGKIIEQ---GSHDELLD  697 (708)
T ss_pred             HHHHHHHHh---cCCEEEEEecchHHH-HcCCEEEEEECCEEEEE---CCHHHHHh
Confidence            455666653   478999999999976 6799999999 776655   68888765

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.17  E-value=0.00079  Score=55.70  Aligned_cols=49  Identities=12%  Similarity=0.217  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++.|+++.  .++|+|+|||+++.+ ..||++++|+ |++...   |+.+++.+
T Consensus       489 ~i~~~l~~~~--~~~tii~itH~~~~~-~~~d~i~~l~~G~i~~~---g~~~~l~~  538 (569)
T PRK10789        489 QILHNLRQWG--EGRTVIISAHRLSAL-TEASEILVMQHGHIAQR---GNHDQLAQ  538 (569)
T ss_pred             HHHHHHHHHh--CCCEEEEEecchhHH-HcCCEEEEEeCCEEEEe---cCHHHHHH
Confidence            4666777664  489999999999887 5699999998 776665   67777765

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=97.16  E-value=0.00083  Score=55.07  Aligned_cols=49  Identities=22%  Similarity=0.409  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++.|+++.  .++|+|+|||+.+.. ..||+|++|+ |+....   |+.+++.+
T Consensus       507 ~i~~~L~~~~--~~~tiIiitH~~~~~-~~~D~ii~l~~g~i~~~---g~~~~l~~  556 (571)
T TIGR02203       507 LVQAALERLM--QGRTTLVIAHRLSTI-EKADRIVVMDDGRIVER---GTHNELLA  556 (571)
T ss_pred             HHHHHHHHHh--CCCEEEEEehhhHHH-HhCCEEEEEeCCEEEee---CCHHHHHH
Confidence            4667777664  379999999999886 6699999999 665544   68777754

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=97.16  E-value=0.0012  Score=55.73  Aligned_cols=37  Identities=19%  Similarity=0.265  Sum_probs=29.7

Q ss_pred             HHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687          11 IKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS   47 (107)
Q Consensus        11 l~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~   47 (107)
                      |.++..+.+.|||+||||++++..+||++++|+ |++.
T Consensus       188 L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~  225 (638)
T PRK10636        188 LEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLF  225 (638)
T ss_pred             HHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEE
Confidence            333333446799999999999999999999999 7654

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=97.15  E-value=0.00081  Score=62.63  Aligned_cols=37  Identities=35%  Similarity=0.420  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      ..++++|++++++ |.|||+||||++ ...+||++++|.
T Consensus       515 ~~L~~lL~~L~~~-G~TVIvVeHd~~-vi~~aDrVi~L~  551 (1809)
T PRK00635        515 HKLINVIKKLRDQ-GNTVLLVEHDEQ-MISLADRIIDIG  551 (1809)
T ss_pred             HHHHHHHHHHHhC-CCEEEEEeCcHH-HHHhCCEEEEEc
Confidence            4678889998764 999999999999 569999999995

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=97.14  E-value=0.0012  Score=47.84  Aligned_cols=36  Identities=22%  Similarity=0.330  Sum_probs=28.2

Q ss_pred             HHHH--HHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           6 LTLQ--VIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         6 ~i~~--ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      ++++  +++.+ ++.|.|+|++|||++.+. .||++++|+
T Consensus       178 ~l~~~~ll~~~-~~~~~tii~~sH~~~~~~-~~d~i~~l~  215 (218)
T cd03290         178 HLMQEGILKFL-QDDKRTLVLVTHKLQYLP-HADWIIAMK  215 (218)
T ss_pred             HHHHHHHHHHH-hcCCCEEEEEeCChHHHh-hCCEEEEec
Confidence            4555  45544 345899999999999985 699999998

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.12  E-value=0.0011  Score=49.45  Aligned_cols=37  Identities=8%  Similarity=-0.140  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      ..+.++|++++++ |.|+|+||||.++. .+||++++|.
T Consensus       196 ~~l~~~i~~~~~~-g~~vi~isH~~~~~-~~~d~i~~~~  232 (247)
T cd03275         196 GKVASYIREQAGP-NFQFIVISLKEEFF-SKADALVGVY  232 (247)
T ss_pred             HHHHHHHHHhccC-CcEEEEEECCHHHH-hhCCeEEEEE
Confidence            3567788888654 89999999997765 7899999998

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=97.11  E-value=0.00082  Score=61.27  Aligned_cols=45  Identities=9%  Similarity=0.065  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHH-HhhcCEEEEec-C-CCccee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMA-TYLSDRVIVFE-G-SPSIST   50 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a-~~~~driivl~-g-~~~~~g   50 (107)
                      ..++++|+++++ .|+|||+++||++.. ...||++++|+ | +.+..|
T Consensus       939 ~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G  986 (1394)
T TIGR00956       939 WSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFG  986 (1394)
T ss_pred             HHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEEC
Confidence            578899999975 489999999999974 57899999998 6 776665

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=97.11  E-value=0.00096  Score=56.75  Aligned_cols=40  Identities=20%  Similarity=0.367  Sum_probs=33.2

Q ss_pred             hcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687          17 HAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus        17 ~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++|+|+|||+++.+ ..||+|++|+ |++...   |++++|.+
T Consensus       662 ~~~~TvIiItHrl~~i-~~aD~IivL~~G~ive~---Gt~~eL~~  702 (711)
T TIGR00958       662 RASRTVLLIAHRLSTV-ERADQILVLKKGSVVEM---GTHKQLME  702 (711)
T ss_pred             cCCCeEEEEeccHHHH-HhCCEEEEEECCEEEEe---eCHHHHHh
Confidence            3579999999999986 5699999999 776655   68888875

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=97.10  E-value=0.0014  Score=55.17  Aligned_cols=29  Identities=14%  Similarity=0.308  Sum_probs=26.4

Q ss_pred             CcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687          19 KKTGFVVEHDFIMATYLSDRVIVFE-GSPS   47 (107)
Q Consensus        19 ~~tvi~vTHDl~~a~~~~driivl~-g~~~   47 (107)
                      +.|||+||||++++..+||++++|+ |++.
T Consensus       203 ~~tvlivsHd~~~l~~~~d~i~~L~~G~i~  232 (635)
T PRK11147        203 QGSIIFISHDRSFIRNMATRIVDLDRGKLV  232 (635)
T ss_pred             CCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence            4699999999999999999999998 7664

>PLN03232 ABC transporter C family member; Provisional

Probab=97.10  E-value=0.00086  Score=61.43  Aligned_cols=49  Identities=24%  Similarity=0.360  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+.+.|++..  .++|+|+|+|.++.+.. ||||++|+ |+++..   |+|++|.+
T Consensus      1409 ~Iq~~L~~~~--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~---Gt~~eLl~ 1458 (1495)
T PLN03232       1409 LIQRTIREEF--KSCTMLVIAHRLNTIID-CDKILVLSSGQVLEY---DSPQELLS 1458 (1495)
T ss_pred             HHHHHHHHHc--CCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEE---CCHHHHHh
Confidence            3455565553  47999999999999866 99999999 776655   79999975

>PLN03130 ABC transporter C family member; Provisional

Probab=97.08  E-value=0.00098  Score=61.58  Aligned_cols=49  Identities=24%  Similarity=0.396  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+.+.|++..  .++|+|+|+|.++.+.. ||||+||+ |+++..   |+|++|.+
T Consensus      1412 ~Iq~~I~~~~--~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~---Gt~~eLl~ 1461 (1622)
T PLN03130       1412 LIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILVLDAGRVVEF---DTPENLLS 1461 (1622)
T ss_pred             HHHHHHHHHC--CCCEEEEEeCChHHHHh-CCEEEEEECCEEEEe---CCHHHHHh
Confidence            4556666653  47999999999999866 99999999 776655   79999976

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=97.08  E-value=0.0011  Score=54.43  Aligned_cols=50  Identities=18%  Similarity=0.424  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+++.|+++.  .++|+|+|||+++.. ..||++++|+ |++...   |+++++.+
T Consensus       513 ~~i~~~l~~~~--~~~t~IiitH~~~~~-~~~d~vi~l~~g~~~~~---g~~~~l~~  563 (576)
T TIGR02204       513 QLVQQALETLM--KGRTTLIIAHRLATV-LKADRIVVMDQGRIVAQ---GTHAELIA  563 (576)
T ss_pred             HHHHHHHHHHh--CCCEEEEEecchHHH-HhCCEEEEEECCEEEee---ecHHHHHH
Confidence            34667777764  379999999999886 5699999998 776655   57777755

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PLN03073 ABC transporter F family; Provisional

Probab=97.07  E-value=0.0015  Score=56.01  Aligned_cols=30  Identities=17%  Similarity=0.066  Sum_probs=27.3

Q ss_pred             cCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687          18 AKKTGFVVEHDFIMATYLSDRVIVFE-GSPS   47 (107)
Q Consensus        18 ~~~tvi~vTHDl~~a~~~~driivl~-g~~~   47 (107)
                      .+.|+|+||||++++..+||++++|+ |++.
T Consensus       390 ~~~tviivsHd~~~l~~~~d~i~~l~~g~i~  420 (718)
T PLN03073        390 WPKTFIVVSHAREFLNTVVTDILHLHGQKLV  420 (718)
T ss_pred             cCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence            47899999999999999999999999 7664

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=97.06  E-value=0.0011  Score=56.97  Aligned_cols=50  Identities=22%  Similarity=0.382  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      .+++-|.++.  .|+|+|+|||.+... +.||||+||+ |+++.+   |+.++|.+.
T Consensus       647 ~I~~~L~~~~--~~~T~I~IaHRl~ti-~~adrIiVl~~Gkiv~~---gs~~ell~~  697 (709)
T COG2274         647 IILQNLLQIL--QGRTVIIIAHRLSTI-RSADRIIVLDQGKIVEQ---GSHEELLAQ  697 (709)
T ss_pred             HHHHHHHHHh--cCCeEEEEEccchHh-hhccEEEEccCCceecc---CCHHHHHHh
Confidence            4566666664  479999999999997 7799999999 888877   688888774

>PLN03073 ABC transporter F family; Provisional

Probab=97.05  E-value=0.0017  Score=55.82  Aligned_cols=29  Identities=21%  Similarity=0.225  Sum_probs=25.9

Q ss_pred             CcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687          19 KKTGFVVEHDFIMATYLSDRVIVFE-GSPS   47 (107)
Q Consensus        19 ~~tvi~vTHDl~~a~~~~driivl~-g~~~   47 (107)
                      +.|+|+||||++++..+||++++|+ |++.
T Consensus       674 ~gtvIivSHd~~~i~~~~drv~~l~~G~i~  703 (718)
T PLN03073        674 QGGVLMVSHDEHLISGSVDELWVVSEGKVT  703 (718)
T ss_pred             CCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence            3499999999999999999999998 7654

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.02  E-value=0.0017  Score=48.67  Aligned_cols=53  Identities=15%  Similarity=0.195  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++...|.++.|++.|.|+.++-....++|.|+||+ |+.+..   |++.+++.
T Consensus       186 sQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~---G~t~~v~a  239 (267)
T COG4167         186 SQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVER---GSTADVLA  239 (267)
T ss_pred             HHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeec---CChhhhhc
Confidence            467889999999999999999999999999999999999 887776   56666655

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=96.99  E-value=0.0014  Score=47.50  Aligned_cols=36  Identities=17%  Similarity=0.114  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      ..++++|+++++  +.|||+||||++++ .+||+++.+.
T Consensus       154 ~~l~~~l~~~~~--~~tiIiitH~~~~~-~~~d~v~~~~  189 (197)
T cd03278         154 ERFARLLKEFSK--ETQFIVITHRKGTM-EAADRLYGVT  189 (197)
T ss_pred             HHHHHHHHHhcc--CCEEEEEECCHHHH-hhcceEEEEE
Confidence            456777777753  68999999999986 6899999997

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=96.98  E-value=0.0013  Score=60.37  Aligned_cols=49  Identities=29%  Similarity=0.348  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+.+.|++..  .++|+|+|+|+++.+.. ||||++|+ |+++..   |+|++|.+
T Consensus      1459 ~Iq~~l~~~~--~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~---G~~~eLl~ 1508 (1522)
T TIGR00957      1459 LIQSTIRTQF--EDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEF---GAPSNLLQ 1508 (1522)
T ss_pred             HHHHHHHHHc--CCCEEEEEecCHHHHHh-CCEEEEEECCEEEEE---CCHHHHHh
Confidence            3555666543  47999999999998755 89999999 776655   79999986

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.95  E-value=0.0017  Score=46.73  Aligned_cols=37  Identities=5%  Similarity=-0.072  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF   42 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl   42 (107)
                      ..++++|+++++ .+.|+|++|||++++..+.+|++.+
T Consensus       166 ~~l~~~l~~~~~-~~~tiii~sh~~~~i~~~~~~~~~~  202 (204)
T PRK13538        166 ARLEALLAQHAE-QGGMVILTTHQDLPVASDKVRKLRL  202 (204)
T ss_pred             HHHHHHHHHHHH-CCCEEEEEecChhhhccCCceEEec
Confidence            467788888864 4889999999999999999999877

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=96.94  E-value=0.0021  Score=46.84  Aligned_cols=37  Identities=16%  Similarity=0.121  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      .+.++|++++++.+.|+|++|||++.+ ..||+++.|.
T Consensus       160 ~l~~~l~~~~~~~~~~iiiitH~~~~~-~~~d~i~~l~  196 (204)
T cd03240         160 SLAEIIEERKSQKNFQLIVITHDEELV-DAADHIYRVE  196 (204)
T ss_pred             HHHHHHHHHHhccCCEEEEEEecHHHH-hhCCEEEEEe
Confidence            577888888665588999999999987 5799999997

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=96.93  E-value=0.0016  Score=59.73  Aligned_cols=49  Identities=22%  Similarity=0.237  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+.+.|++..  .++|||+|+|.++.+.. ||||++|+ |+++..   |+|++|.+
T Consensus      1391 ~I~~~L~~~~--~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~---g~p~~Ll~ 1440 (1490)
T TIGR01271      1391 IIRKTLKQSF--SNCTVILSEHRVEALLE-CQQFLVIEGSSVKQY---DSIQKLLN 1440 (1490)
T ss_pred             HHHHHHHHHc--CCCEEEEEecCHHHHHh-CCEEEEEECCEEEEe---CCHHHHHc
Confidence            4566666553  47999999999998765 99999999 766544   79999985

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=96.93  E-value=0.0023  Score=52.96  Aligned_cols=35  Identities=17%  Similarity=0.341  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      ..+.++|+++    +.|+|+||||++++..+||++++|+
T Consensus       482 ~~l~~~l~~~----~~tvi~vtHd~~~~~~~~d~i~~l~  516 (556)
T PRK11819        482 RALEEALLEF----PGCAVVISHDRWFLDRIATHILAFE  516 (556)
T ss_pred             HHHHHHHHhC----CCeEEEEECCHHHHHHhCCEEEEEE
Confidence            3455666655    2489999999999999999999997

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=96.91  E-value=0.0027  Score=58.30  Aligned_cols=39  Identities=10%  Similarity=0.232  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-C
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-G   44 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g   44 (107)
                      ..+.+.|+++.++.|+|+|+|||+++.+ ..||+|++|+ |
T Consensus       616 ~~i~~~L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl~~g  655 (1466)
T PTZ00265        616 YLVQKTINNLKGNENRITIIIAHRLSTI-RYANTIFVLSNR  655 (1466)
T ss_pred             HHHHHHHHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEEeCC
Confidence            4577888888654589999999999987 6899999998 5

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=96.81  E-value=0.0014  Score=47.63  Aligned_cols=40  Identities=18%  Similarity=0.263  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHhh--cCcEEEEEeCCHHHHHhhcCEEEEec-CCC
Q psy1687           6 LTLQVIKRFILH--AKKTGFVVEHDFIMATYLSDRVIVFE-GSP   46 (107)
Q Consensus         6 ~i~~ll~~l~~~--~~~tvi~vTHDl~~a~~~~driivl~-g~~   46 (107)
                      .+.++|++++.+  .+.|++++||+++.+..+ |+|.+|. ++|
T Consensus       151 ~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~~~~  193 (198)
T cd03276         151 ISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRMKDP  193 (198)
T ss_pred             HHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeEEEecCC
Confidence            567778877544  246999999999999887 9999998 654

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PTZ00243 ABC transporter; Provisional

Probab=96.79  E-value=0.0022  Score=59.11  Aligned_cols=49  Identities=16%  Similarity=0.257  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+.+.|++..  .++|+|+|+|.++.+ .-||+|++|+ |+++..   |+|++|.+
T Consensus      1484 ~Iq~~L~~~~--~~~TvI~IAHRl~ti-~~~DrIlVLd~G~VvE~---Gt~~eLl~ 1533 (1560)
T PTZ00243       1484 QIQATVMSAF--SAYTVITIAHRLHTV-AQYDKIIVMDHGAVAEM---GSPRELVM 1533 (1560)
T ss_pred             HHHHHHHHHC--CCCEEEEEeccHHHH-HhCCEEEEEECCEEEEE---CCHHHHHh
Confidence            3455555542  479999999999877 5599999999 766655   79999975

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=96.66  E-value=0.0034  Score=45.17  Aligned_cols=37  Identities=5%  Similarity=-0.058  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF   42 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl   42 (107)
                      ..++++|+++.++ |.|+|++|||......+|++++.+
T Consensus       162 ~~l~~~l~~~~~~-g~tiii~sH~~~~~~~~~~~~~~~  198 (201)
T cd03231         162 ARFAEAMAGHCAR-GGMVVLTTHQDLGLSEAGARELDL  198 (201)
T ss_pred             HHHHHHHHHHHhC-CCEEEEEecCchhhhhccceeEec
Confidence            4678888887654 899999999999999999999887

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=96.64  E-value=0.0036  Score=51.82  Aligned_cols=42  Identities=21%  Similarity=0.124  Sum_probs=34.8

Q ss_pred             HHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcce
Q psy1687           7 TLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIS   49 (107)
Q Consensus         7 i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~   49 (107)
                      +.+.|.+..+ .|++|++++-||+++..+||||.||. |++...
T Consensus       442 I~~~l~e~r~-~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~  484 (501)
T COG3845         442 IHERLLELRD-AGKAVLLISEDLDEILELSDRIAVIYEGRIVGI  484 (501)
T ss_pred             HHHHHHHHHh-cCCEEEEEehhHHHHHHhhheeeeeeCCceecc
Confidence            4556666654 59999999999999999999999999 876654

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=96.62  E-value=0.0051  Score=51.80  Aligned_cols=32  Identities=22%  Similarity=0.221  Sum_probs=26.5

Q ss_pred             hhcCcEEEEEeCCHHHHHhhcCEEEEec--CCCc
Q psy1687          16 LHAKKTGFVVEHDFIMATYLSDRVIVFE--GSPS   47 (107)
Q Consensus        16 ~~~~~tvi~vTHDl~~a~~~~driivl~--g~~~   47 (107)
                      ++.+.|||+||||++++..+||++++|+  |++.
T Consensus       484 ~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~  517 (635)
T PRK11147        484 DSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIG  517 (635)
T ss_pred             HhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEE
Confidence            3335699999999999999999999996  5443

>PLN03140 ABC transporter G family member; Provisional

Probab=96.58  E-value=0.003  Score=58.07  Aligned_cols=45  Identities=11%  Similarity=0.104  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHH-HHHhhcCEEEEec--CCCccee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFI-MATYLSDRVIVFE--GSPSIST   50 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~-~a~~~~driivl~--g~~~~~g   50 (107)
                      .+++++|++++++ |+|||+++|+++ .+..+||++++|+  |+.+..|
T Consensus      1056 ~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G 1103 (1470)
T PLN03140       1056 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG 1103 (1470)
T ss_pred             HHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEEC
Confidence            5789999999765 999999999998 5778999999997  4666665

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=96.56  E-value=0.0042  Score=57.07  Aligned_cols=39  Identities=15%  Similarity=0.228  Sum_probs=32.0

Q ss_pred             cCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687          18 AKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus        18 ~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .|+|+|+|||+++.+.. ||++++|+ |++...   |+++++..
T Consensus       597 ~~~tvilvtH~~~~~~~-ad~ii~l~~g~i~~~---g~~~~l~~  636 (1490)
T TIGR01271       597 SNKTRILVTSKLEHLKK-ADKILLLHEGVCYFY---GTFSELQA  636 (1490)
T ss_pred             cCCeEEEEeCChHHHHh-CCEEEEEECCEEEEE---cCHHHHHh
Confidence            38999999999999864 99999999 766655   57777764

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=96.55  E-value=0.0043  Score=57.08  Aligned_cols=39  Identities=31%  Similarity=0.347  Sum_probs=32.4

Q ss_pred             cCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687          18 AKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus        18 ~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++|+|+|||+++.+.. ||+|++|+ |++...   |+++++.+
T Consensus       811 ~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~~---g~~~~l~~  850 (1522)
T TIGR00957       811 KNKTRILVTHGISYLPQ-VDVIIVMSGGKISEM---GSYQELLQ  850 (1522)
T ss_pred             cCCEEEEEeCChhhhhh-CCEEEEecCCeEEee---CCHHHHHh
Confidence            47899999999999866 99999999 776655   57777764

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR00618 sbcc exonuclease SbcC

Probab=96.55  E-value=0.0062  Score=53.97  Aligned_cols=40  Identities=13%  Similarity=0.137  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecC
Q psy1687           4 LHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEG   44 (107)
Q Consensus         4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g   44 (107)
                      +..++++|+++.. .|.+|++|||++++...+||+|.|++.
T Consensus       996 ~~~~~~~l~~l~~-~g~~i~iisH~~~~~~~~~~~i~v~~~ 1035 (1042)
T TIGR00618       996 LDRAIGILDAIRE-GSKMIGIISHVPEFRERIPHRILVKKT 1035 (1042)
T ss_pred             HHHHHHHHHHHHh-CCCEEEEEeCcHHHHHhhCCEEEEEEC
Confidence            4578899999975 699999999999999999999999983

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0055|consensus

Probab=96.50  E-value=0.0045  Score=55.94  Aligned_cols=50  Identities=18%  Similarity=0.275  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      .+.+.|.+..  .|.|.|+|+|+|..... +|+|++|+ |+++..   |+++||.+.
T Consensus       527 ~Vq~ALd~~~--~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~---G~h~ELi~~  577 (1228)
T KOG0055|consen  527 VVQEALDKAS--KGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQ---GTHDELIAL  577 (1228)
T ss_pred             HHHHHHHHhh--cCCeEEEEeeehhhhhc-cCEEEEEECCEEEEe---cCHHHHHhc
Confidence            4566676654  48899999999999977 99999999 877766   699999884

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=96.32  E-value=0.0075  Score=49.86  Aligned_cols=30  Identities=27%  Similarity=0.321  Sum_probs=25.0

Q ss_pred             hcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687          17 HAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS   47 (107)
Q Consensus        17 ~~~~tvi~vTHDl~~a~~~~driivl~-g~~~   47 (107)
                      ..++|+|+|||+++.. ..||+|++|+ |++.
T Consensus       519 ~~~~tiiiisH~~~~~-~~~d~i~~l~~G~i~  549 (555)
T TIGR01194       519 RQGKTIIIISHDDQYF-ELADQIIKLAAGCIV  549 (555)
T ss_pred             hCCCEEEEEeccHHHH-HhCCEEEEEECCEEE
Confidence            3589999999999865 6899999999 6543

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=96.30  E-value=0.0082  Score=49.46  Aligned_cols=42  Identities=26%  Similarity=0.259  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI   48 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~   48 (107)
                      .+++.+.+..+..++|+|+|||+++.. ..||++++|+ |++..
T Consensus       487 ~i~~~l~~~~~~~~~tvi~itH~~~~~-~~~d~i~~l~~G~i~e  529 (547)
T PRK10522        487 EFYQVLLPLLQEMGKTIFAISHDDHYF-IHADRLLEMRNGQLSE  529 (547)
T ss_pred             HHHHHHHHHHHhCCCEEEEEEechHHH-HhCCEEEEEECCEEEE
Confidence            345555544433489999999999765 6899999999 65543

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=96.26  E-value=0.0056  Score=45.02  Aligned_cols=39  Identities=5%  Similarity=0.112  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHhhcC-cEEEEEeCCHHHHHhhcC--EEEEec
Q psy1687           5 HLTLQVIKRFILHAK-KTGFVVEHDFIMATYLSD--RVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~-~tvi~vTHDl~~a~~~~d--riivl~   43 (107)
                      ..++++|+++.++.| .|+|++|||+.....+||  ++++|.
T Consensus       167 ~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~  208 (213)
T cd03277         167 RKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVY  208 (213)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEe
Confidence            356788888765434 589999999999999887  677776

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.20  E-value=0.0085  Score=43.28  Aligned_cols=36  Identities=11%  Similarity=0.033  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      .+++++|++++++ |.|+|++|||++++..  |+++-++
T Consensus       164 ~~l~~~l~~~~~~-~~tiii~sH~~~~~~~--~~~~~~~  199 (207)
T PRK13539        164 ALFAELIRAHLAQ-GGIVIAATHIPLGLPG--ARELDLG  199 (207)
T ss_pred             HHHHHHHHHHHHC-CCEEEEEeCCchhhcc--CcEEeec
Confidence            4678888888654 8999999999999987  8888774

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=96.19  E-value=0.012  Score=41.10  Aligned_cols=37  Identities=19%  Similarity=0.258  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      ..+.+.+.++..+ +.++|++||+.+++. .+|+++.|+
T Consensus       118 ~~l~~~l~~~~~~-~~~vii~TH~~~~~~-~~d~~~~l~  154 (162)
T cd03227         118 QALAEAILEHLVK-GAQVIVITHLPELAE-LADKLIHIK  154 (162)
T ss_pred             HHHHHHHHHHHhc-CCEEEEEcCCHHHHH-hhhhEEEEE
Confidence            3466677777655 889999999999985 589999997

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=96.15  E-value=0.015  Score=41.58  Aligned_cols=38  Identities=18%  Similarity=0.051  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecC
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEG   44 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g   44 (107)
                      ..+.+.|++++++ |.|+|++||+.+.+ ..+|+++.+..
T Consensus       135 ~~i~~~L~~~~~~-g~tiIiiSH~~~~~-~~adrvi~i~~  172 (178)
T cd03239         135 RRVSDMIKEMAKH-TSQFIVITLKKEMF-ENADKLIGVLF  172 (178)
T ss_pred             HHHHHHHHHHHhC-CCEEEEEECCHHHH-hhCCeEEEEEE
Confidence            3566778877654 78999999999887 58999999973

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>PTZ00243 ABC transporter; Provisional

Probab=96.14  E-value=0.011  Score=54.65  Aligned_cols=39  Identities=21%  Similarity=0.325  Sum_probs=32.1

Q ss_pred             cCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687          18 AKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus        18 ~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .|+|+|+||||++.+ ..||++++|+ |++...   |+++++.+
T Consensus       831 ~~~TvIlvTH~~~~~-~~ad~ii~l~~G~i~~~---G~~~~l~~  870 (1560)
T PTZ00243        831 AGKTRVLATHQVHVV-PRADYVVALGDGRVEFS---GSSADFMR  870 (1560)
T ss_pred             CCCEEEEEeCCHHHH-HhCCEEEEEECCEEEEe---cCHHHHHh
Confidence            489999999999998 5699999999 776665   57777654

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=96.12  E-value=0.014  Score=49.50  Aligned_cols=31  Identities=16%  Similarity=0.151  Sum_probs=25.8

Q ss_pred             HHhhcCcEEEEEeCCHHHHHhhcCEEEEecCC
Q psy1687          14 FILHAKKTGFVVEHDFIMATYLSDRVIVFEGS   45 (107)
Q Consensus        14 l~~~~~~tvi~vTHDl~~a~~~~driivl~g~   45 (107)
                      +.++.|.|+|+||||++.+ .+||++++|+|+
T Consensus       624 ~l~~~~~tvI~isH~~~~~-~~~d~il~l~~~  654 (659)
T TIGR00954       624 LCREFGITLFSVSHRKSLW-KYHEYLLYMDGR  654 (659)
T ss_pred             HHHHcCCEEEEEeCchHHH-HhCCEEEEEeCC
Confidence            3334589999999999986 789999999864

>TIGR00634 recN DNA repair protein RecN

Probab=96.05  E-value=0.013  Score=48.74  Aligned_cols=36  Identities=14%  Similarity=0.093  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      ..+.++|+++++  +.+||+|||++..+. +||++++|.
T Consensus       481 ~~~~~~l~~l~~--~~~vi~iTH~~~~~~-~ad~~~~l~  516 (563)
T TIGR00634       481 QAIAKKLAQLSE--RHQVLCVTHLPQVAA-HADAHFKVE  516 (563)
T ss_pred             HHHHHHHHHHhc--CCEEEEEEChHHHHH-hcCeEEEEE
Confidence            457778888863  799999999999985 899999998

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=96.02  E-value=0.016  Score=53.46  Aligned_cols=52  Identities=25%  Similarity=0.256  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecC-----CCcceeecCCchhHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEG-----SPSISTLANAPQNLLN   60 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g-----~~~~~g~v~tp~~L~~   60 (107)
                      .|.+.|.++....++|+|+|||.+..+ ..||+|++|++     +.+.  +.|+.++|.+
T Consensus      1396 ~I~~~L~~~~~~~~~TvIiIaHRlsti-~~aD~Ivvl~~~~~~G~iv~--e~Gth~eLl~ 1452 (1466)
T PTZ00265       1396 LIEKTIVDIKDKADKTIITIAHRIASI-KRSDKIVVFNNPDRTGSFVQ--AHGTHEELLS 1452 (1466)
T ss_pred             HHHHHHHHHhccCCCEEEEEechHHHH-HhCCEEEEEeCCCCCCCEEE--EecCHHHHHh
Confidence            466677776433489999999999886 56999999983     3232  3378888875

>KOG0057|consensus

Probab=96.01  E-value=0.014  Score=49.21  Aligned_cols=50  Identities=20%  Similarity=0.270  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++++.+.+.  ..++|+|+|-||++.+ .-||+|++++ |++...   |+-++|..
T Consensus       524 ~~i~~~i~~~--~~~rTvI~IvH~l~ll-~~~DkI~~l~nG~v~e~---gth~ell~  574 (591)
T KOG0057|consen  524 REILDMIMDV--MSGRTVIMIVHRLDLL-KDFDKIIVLDNGTVKEY---GTHSELLA  574 (591)
T ss_pred             HHHHHHHHHh--cCCCeEEEEEecchhH-hcCCEEEEEECCeeEEe---ccHHHHhh
Confidence            4677777773  3589999999999998 5599999999 766655   67777766

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=95.92  E-value=0.019  Score=42.10  Aligned_cols=36  Identities=17%  Similarity=0.082  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      ..+.++|+++.  .+.|+|++||+. ++..+||++++|.
T Consensus       168 ~~l~~~l~~~~--~~~~~iivs~~~-~~~~~~d~v~~~~  203 (212)
T cd03274         168 SIVANYIKERT--KNAQFIVISLRN-NMFELADRLVGIY  203 (212)
T ss_pred             HHHHHHHHHHc--CCCEEEEEECcH-HHHHhCCEEEEEE
Confidence            45677788774  357999999995 6678999999998

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=95.87  E-value=0.02  Score=41.97  Aligned_cols=36  Identities=8%  Similarity=-0.060  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      ..+++.|+++++  +.++|++||+.+ +..+||++++|.
T Consensus       199 ~~~~~~l~~~~~--~~~ii~~~h~~~-~~~~~d~i~~l~  234 (243)
T cd03272         199 TAVANMIKELSD--GAQFITTTFRPE-LLEVADKFYGVK  234 (243)
T ss_pred             HHHHHHHHHHhC--CCEEEEEecCHH-HHhhCCEEEEEE
Confidence            356677777743  788888899865 679999999998

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=95.85  E-value=0.021  Score=43.21  Aligned_cols=40  Identities=13%  Similarity=0.101  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS   47 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~   47 (107)
                      ..++++|+++++  +.|+|++|||+..+ .+||+++++. +..+
T Consensus       211 ~~l~~~l~~~~~--~~tii~isH~~~~~-~~~d~~~~l~~~~~~  251 (276)
T cd03241         211 QAVGKKLKELSR--SHQVLCITHLPQVA-AMADNHFLVEKEVEG  251 (276)
T ss_pred             HHHHHHHHHHhC--CCEEEEEechHHHH-HhcCcEEEEEEecCC
Confidence            456677777753  68999999999965 7999999998 5444

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0061|consensus

Probab=95.78  E-value=0.012  Score=49.86  Aligned_cols=64  Identities=25%  Similarity=0.345  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHhhcCcEEEEEeCCHH-HHHhhcCEEEEec-CCCcceeecCCchhHHHHHHhhhhhcCeeeee
Q psy1687           4 LHLTLQVIKRFILHAKKTGFVVEHDFI-MATYLSDRVIVFE-GSPSISTLANAPQNLLNGMNKFLSLLGITFRR   75 (107)
Q Consensus         4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~-~a~~~~driivl~-g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~~~   75 (107)
                      -..+++.|++++++ |+|||++-|... ....+-|++++|. |+++..   |+|+++.+    |+...+...+.
T Consensus       206 A~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~---G~~~~~~~----ff~~~G~~~P~  271 (613)
T KOG0061|consen  206 ALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYS---GSPRELLE----FFSSLGFPCPE  271 (613)
T ss_pred             HHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEe---cCHHHHHH----HHHhCCCCCCC
Confidence            35789999999988 999999999984 6778999999999 988888   57777665    66777766543

>PLN03232 ABC transporter C family member; Provisional

Probab=95.65  E-value=0.02  Score=52.67  Aligned_cols=39  Identities=23%  Similarity=0.255  Sum_probs=32.3

Q ss_pred             cCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687          18 AKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus        18 ~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++|+|+|||+++.+ ..||+|++|+ |++...   |+.+++.+
T Consensus       789 ~~kT~IlvTH~~~~l-~~aD~Ii~L~~G~i~~~---Gt~~eL~~  828 (1495)
T PLN03232        789 KGKTRVLVTNQLHFL-PLMDRIILVSEGMIKEE---GTFAELSK  828 (1495)
T ss_pred             cCCEEEEEECChhhH-HhCCEEEEEeCCEEEEe---cCHHHHHh
Confidence            479999999999875 6799999999 766655   68888765

>PLN03130 ABC transporter C family member; Provisional

Probab=95.49  E-value=0.03  Score=52.06  Aligned_cols=39  Identities=23%  Similarity=0.268  Sum_probs=32.2

Q ss_pred             cCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687          18 AKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus        18 ~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++|+|+|||+++.+ ..||+|++|+ |++...   |+.++|.+
T Consensus       789 ~~kTvIlVTH~l~~l-~~aD~Ii~L~~G~i~e~---Gt~~eL~~  828 (1622)
T PLN03130        789 RGKTRVLVTNQLHFL-SQVDRIILVHEGMIKEE---GTYEELSN  828 (1622)
T ss_pred             cCCEEEEEECCHhHH-HhCCEEEEEeCCEEEEe---CCHHHHHh
Confidence            479999999999875 6699999999 766655   68888765

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=95.45  E-value=0.031  Score=41.55  Aligned_cols=36  Identities=11%  Similarity=-0.081  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      ..+.++|++++  .|.|+|++||+ .+....||+++-++
T Consensus       207 ~~~~~~l~~~~--~g~~ii~iSH~-~~~~~~~d~v~~~~  242 (251)
T cd03273         207 QNIGRMIKTHF--KGSQFIVVSLK-EGMFNNANVLFRTR  242 (251)
T ss_pred             HHHHHHHHHHc--CCCEEEEEECC-HHHHHhCCEEEEEE
Confidence            45667777774  37899999999 55566799998887

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0054|consensus

Probab=95.45  E-value=0.017  Score=53.05  Aligned_cols=40  Identities=28%  Similarity=0.356  Sum_probs=33.7

Q ss_pred             cCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687          18 AKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus        18 ~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      .++|+|+|||.++.. .-||.|++|+ |++...   |+.++|.+.
T Consensus       692 ~~KT~ILVTHql~~L-~~ad~Iivl~~G~I~~~---Gty~el~~~  732 (1381)
T KOG0054|consen  692 RGKTVILVTHQLQFL-PHADQIIVLKDGKIVES---GTYEELLKS  732 (1381)
T ss_pred             cCCEEEEEeCchhhh-hhCCEEEEecCCeEecc---cCHHHHHhc
Confidence            479999999988876 6799999999 877776   688888863

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=95.45  E-value=0.022  Score=50.08  Aligned_cols=54  Identities=19%  Similarity=0.273  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCccee----ecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSIST----LANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g----~v~tp~~L~~   60 (107)
                      ..+++.|.+|.+ .|-|||+|.|+|+.+ .-||+|+=|..+.+..|    -.|||+++.+
T Consensus       862 ~kLl~VL~rLvd-~GnTViVIEHNLdVI-k~AD~IIDLGPeGG~~GG~iva~GTPeeva~  919 (935)
T COG0178         862 KKLLEVLHRLVD-KGNTVIVIEHNLDVI-KTADWIIDLGPEGGDGGGEIVASGTPEEVAK  919 (935)
T ss_pred             HHHHHHHHHHHh-CCCEEEEEecccceE-eecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence            456677777765 499999999999987 77999999962223333    4589999986

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=95.30  E-value=0.034  Score=45.37  Aligned_cols=35  Identities=23%  Similarity=0.447  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF   42 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl   42 (107)
                      ..+++.|+++.  .++|+|+|||+++.. ..||++++|
T Consensus       495 ~~i~~~l~~~~--~~~t~i~itH~~~~~-~~~d~i~~l  529 (529)
T TIGR02857       495 ALVTEALRALA--QGRTVLLVTHRLALA-ERADRIVVL  529 (529)
T ss_pred             HHHHHHHHHhc--CCCEEEEEecCHHHH-HhCCEEEeC
Confidence            35666776664  479999999999987 579999986

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.17  E-value=0.073  Score=40.66  Aligned_cols=52  Identities=21%  Similarity=0.302  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhc-CEEEEec-CCCcceeecCCchhHHH
Q psy1687           4 LHLTLQVIKRFILHAKKTGFVVEHDFIMATYLS-DRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~-driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      |-.+.+.+.++..+ |.++++|||.-..+..+- |++.||- |+++..|   .| +|.+
T Consensus       180 lk~V~~~i~~lr~~-~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG---~~-el~~  233 (251)
T COG0396         180 LKIVAEGINALREE-GRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG---DP-ELAE  233 (251)
T ss_pred             HHHHHHHHHHHhcC-CCeEEEEecHHHHHhhcCCCEEEEEECCEEEecC---CH-HHHH
Confidence            45677778888654 999999999999998875 9999998 9999885   66 5544

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=95.07  E-value=0.058  Score=45.13  Aligned_cols=37  Identities=22%  Similarity=0.356  Sum_probs=30.0

Q ss_pred             HHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecC
Q psy1687           8 LQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEG   44 (107)
Q Consensus         8 ~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g   44 (107)
                      ++.|...-.+..-|||+||||-.++..+|++++++.+
T Consensus       475 ~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~  511 (530)
T COG0488         475 LEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED  511 (530)
T ss_pred             HHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEcC
Confidence            3444444445567999999999999999999999997

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=95.04  E-value=0.04  Score=42.26  Aligned_cols=46  Identities=9%  Similarity=0.035  Sum_probs=31.0

Q ss_pred             HHHHHHHHHhhcCcEEEEEeCCHHH--H-----------HhhcCEEEEecCCCcceeecCCchhH
Q psy1687           7 TLQVIKRFILHAKKTGFVVEHDFIM--A-----------TYLSDRVIVFEGSPSISTLANAPQNL   58 (107)
Q Consensus         7 i~~ll~~l~~~~~~tvi~vTHDl~~--a-----------~~~~driivl~g~~~~~g~v~tp~~L   58 (107)
                      +..+++.+.  .|.|+|++|||.+.  +           ..++||+++|+++. ..   |+++++
T Consensus       209 ~~~l~~~~~--~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~-~~---g~~~~i  267 (270)
T TIGR02858       209 VEALLEALH--AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK-GP---GTVEAV  267 (270)
T ss_pred             HHHHHHHHh--CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC-CC---Cceeec
Confidence            444555543  59999999997666  5           36799999999432 22   455554

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=94.89  E-value=0.05  Score=45.50  Aligned_cols=44  Identities=14%  Similarity=0.255  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcce
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIS   49 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~   49 (107)
                      +-..+|..+-....-|+|+||||-.+....|++|+-++ |+....
T Consensus       187 ~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y  231 (530)
T COG0488         187 ESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPY  231 (530)
T ss_pred             HHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEe
Confidence            34556666654333399999999999999999999999 765543

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=94.77  E-value=0.032  Score=38.89  Aligned_cols=38  Identities=16%  Similarity=0.084  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHH---------HHhhcCEEEEecC
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIM---------ATYLSDRVIVFEG   44 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~---------a~~~~driivl~g   44 (107)
                      .+.++++.+.+ .|.|+|+++|+...         +..+||.++.|+.
T Consensus       118 ~i~~l~~~l~~-~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~~  164 (187)
T cd01124         118 EIRRLLFALKR-FGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLRL  164 (187)
T ss_pred             HHHHHHHHHHH-CCCEEEEEeccccCCCcccCcCceeEeeeEEEEEEE
Confidence            34566766654 48999999999876         7899999999983

A related protein is found in archaea.

>PRK03918 chromosome segregation protein; Provisional

Probab=94.61  E-value=0.098  Score=45.14  Aligned_cols=36  Identities=19%  Similarity=0.279  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      .+.++|..+.. .+.++|+||||.++. .+||++++|.
T Consensus       832 ~l~~~l~~~~~-~~~~iiiith~~~~~-~~~d~~~~l~  867 (880)
T PRK03918        832 KLVDIMERYLR-KIPQVIIVSHDEELK-DAADYVIRVS  867 (880)
T ss_pred             HHHHHHHHHHh-cCCEEEEEECCHHHH-HhCCeEEEEE
Confidence            46677777754 367999999999865 7899999998

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=94.58  E-value=0.061  Score=41.30  Aligned_cols=47  Identities=9%  Similarity=0.026  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHhh-cCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687           4 LHLTLQVIKRFILH-AKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST   50 (107)
Q Consensus         4 ~~~i~~ll~~l~~~-~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g   50 (107)
                      .+.+.+.|.+++.. .+.++|+|||..+++....++++.++ |++..+|
T Consensus       207 re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g  255 (257)
T COG1119         207 REQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG  255 (257)
T ss_pred             HHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeecc
Confidence            45566667777543 36799999999999999999999999 8877764

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=94.51  E-value=0.091  Score=44.21  Aligned_cols=50  Identities=16%  Similarity=0.121  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+.+.|..+. ..|.|+|+|||-.... ..+|+|.+|+ |+....   |+.+++..
T Consensus       510 AL~~Ai~~~k-~rG~~vvviaHRPs~L-~~~Dkilvl~~G~~~~F---G~r~eVLa  560 (580)
T COG4618         510 ALAAAILAAK-ARGGTVVVIAHRPSAL-ASVDKILVLQDGRIAAF---GPREEVLA  560 (580)
T ss_pred             HHHHHHHHHH-HcCCEEEEEecCHHHH-hhcceeeeecCChHHhc---CCHHHHHH
Confidence            3566677774 4599999999999876 7799999999 766665   57677665

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=94.47  E-value=0.042  Score=40.66  Aligned_cols=38  Identities=16%  Similarity=0.003  Sum_probs=28.3

Q ss_pred             HHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687          10 VIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI   48 (107)
Q Consensus        10 ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~   48 (107)
                      +++.+.++.|.++|++||+ .++..+||++..++ |+...
T Consensus       134 il~~l~~~~~~~vlisTH~-~el~~~~~~~~~i~~g~~~~  172 (222)
T cd03285         134 IAEYIATQIKCFCLFATHF-HELTALADEVPNVKNLHVTA  172 (222)
T ss_pred             HHHHHHhcCCCeEEEEech-HHHHHHhhcCCCeEEEEEEE
Confidence            3455554458899999996 77788999998887 65544

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK10869 recombination and repair protein; Provisional

Probab=94.38  E-value=0.084  Score=44.21  Aligned_cols=37  Identities=8%  Similarity=-0.008  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecC
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEG   44 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g   44 (107)
                      ..+.++|+++.+  +.+||+|||++.++ .+||+.+++..
T Consensus       471 ~~v~~~l~~l~~--~~qvi~iTH~~~~~-~~ad~~~~v~k  507 (553)
T PRK10869        471 AVVGKLLRQLGE--STQVMCVTHLPQVA-GCGHQHFFVSK  507 (553)
T ss_pred             HHHHHHHHHHhc--CCEEEEEecCHHHH-HhCCEEEEEec
Confidence            346777887753  68999999999987 79999999983

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=94.37  E-value=0.14  Score=45.22  Aligned_cols=55  Identities=24%  Similarity=0.243  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCccee----ecCCchhHHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSIST----LANAPQNLLNG   61 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g----~v~tp~~L~~~   61 (107)
                      ..+++.|++|.+ .|-|+|+|.||-+.. ..||+|+=|....+..|    --|+|+++...
T Consensus       520 ~rLi~tL~~LRD-lGNTviVVEHDedti-~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~  578 (935)
T COG0178         520 ERLIETLKRLRD-LGNTVIVVEHDEDTI-RAADHIIDIGPGAGEHGGEIVAEGTPEELLAN  578 (935)
T ss_pred             HHHHHHHHHHHh-cCCeEEEEecCHHHH-hhcCEEEeeCCCCCcCCCEEEEccCHHHHHhC
Confidence            457778888854 589999999998876 77999998872233344    44899999875

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=94.20  E-value=0.045  Score=39.41  Aligned_cols=38  Identities=8%  Similarity=-0.046  Sum_probs=28.5

Q ss_pred             HHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687           9 QVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI   48 (107)
Q Consensus         9 ~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~   48 (107)
                      .+++.+.+ .+.|+|++||+. ....+||+++.|. |+...
T Consensus       132 ~~l~~l~~-~~~~vi~~tH~~-~l~~~~d~~~~l~~g~l~~  170 (200)
T cd03280         132 AILEELLE-RGALVIATTHYG-ELKAYAYKREGVENASMEF  170 (200)
T ss_pred             HHHHHHHh-cCCEEEEECCHH-HHHHHHhcCCCeEEEEEEE
Confidence            35666654 489999999995 5568999999998 65443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=94.13  E-value=0.14  Score=37.98  Aligned_cols=43  Identities=21%  Similarity=0.305  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS   47 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~   47 (107)
                      ..+-++|.++.++.+.+++-||||-+.|.+.+|++|-+. |..+
T Consensus       170 r~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~  213 (223)
T COG4619         170 RNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG  213 (223)
T ss_pred             HHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence            456678888887779999999999999999999999997 5433

>PRK02224 chromosome segregation protein; Provisional

Probab=93.92  E-value=0.15  Score=44.14  Aligned_cols=41  Identities=17%  Similarity=0.212  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHhhcCc-EEEEEeCCHHHHHhhcCEEEEecCCCc
Q psy1687           5 HLTLQVIKRFILHAKK-TGFVVEHDFIMATYLSDRVIVFEGSPS   47 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~-tvi~vTHDl~~a~~~~driivl~g~~~   47 (107)
                      ..+.++|+++.. .|. +||+||||.+++. .||+++.+...++
T Consensus       830 ~~~~~~l~~~~~-~~~~qviiish~~~~~~-~ad~~~~~~~~~~  871 (880)
T PRK02224        830 SQLVDLVESMRR-LGVEQIVVVSHDDELVG-AADDLVRVEKDPT  871 (880)
T ss_pred             HHHHHHHHHHHh-cCCCeEEEEECChHHHH-hcCeeEEeecCCC
Confidence            356677777754 354 8999999999985 6999999985454

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=93.88  E-value=0.056  Score=38.69  Aligned_cols=34  Identities=9%  Similarity=-0.021  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEE
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVI   40 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~drii   40 (107)
                      ..+.++|+++++ .|.|+|++|||.+.+.. ||.-+
T Consensus       164 ~~l~~~l~~~~~-~~~tiii~sh~~~~~~~-~d~~~  197 (200)
T PRK13540        164 LTIITKIQEHRA-KGGAVLLTSHQDLPLNK-ADYEE  197 (200)
T ss_pred             HHHHHHHHHHHH-cCCEEEEEeCCchhccc-cchhh
Confidence            467788888754 48999999999998855 76544

>KOG0054|consensus

Probab=93.76  E-value=0.084  Score=48.66  Aligned_cols=40  Identities=28%  Similarity=0.395  Sum_probs=34.5

Q ss_pred             cCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687          18 AKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus        18 ~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      .+.||+.|-|.++-+.. ||||+||+ |+++-.   ++|++|.+.
T Consensus      1323 ~dcTVltIAHRl~TVmd-~DrVlVld~G~v~Ef---dsP~~Ll~~ 1363 (1381)
T KOG0054|consen 1323 KDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEF---DSPAELLSD 1363 (1381)
T ss_pred             cCCeEEEEeeccchhhh-cCeEEEeeCCeEeec---CChHHHHhC
Confidence            47899999999999966 99999999 766544   899999974

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=93.28  E-value=0.12  Score=36.92  Aligned_cols=34  Identities=9%  Similarity=0.119  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEE
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIV   41 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driiv   41 (107)
                      ..++++|+++++ .|.|+|++|||...  ..|++++.
T Consensus       164 ~~l~~~l~~~~~-~~~tii~~sH~~~~--~~~~~~~~  197 (198)
T TIGR01189       164 ALLAGLLRAHLA-RGGIVLLTTHQDLG--LVEARELR  197 (198)
T ss_pred             HHHHHHHHHHHh-CCCEEEEEEccccc--ccceEEee
Confidence            467788888865 48999999999854  34577654

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>KOG0062|consensus

Probab=92.83  E-value=0.23  Score=41.88  Aligned_cols=29  Identities=24%  Similarity=0.275  Sum_probs=25.9

Q ss_pred             CcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687          19 KKTGFVVEHDFIMATYLSDRVIVFE-GSPS   47 (107)
Q Consensus        19 ~~tvi~vTHDl~~a~~~~driivl~-g~~~   47 (107)
                      +-.||+||||.++...+|+.+|+.+ |++.
T Consensus       529 ~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt  558 (582)
T KOG0062|consen  529 NGGVVLVSHDEEFISSLCKELWVVEDGKVT  558 (582)
T ss_pred             CCcEEEEECcHHHHhhcCceeEEEcCCcEE
Confidence            5699999999999999999999999 6543

>PRK01156 chromosome segregation protein; Provisional

Probab=92.75  E-value=0.29  Score=42.65  Aligned_cols=37  Identities=8%  Similarity=0.070  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHhhc-C-cEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           6 LTLQVIKRFILHA-K-KTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         6 ~i~~ll~~l~~~~-~-~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      .+.++++...... + .|+|+||||.+++ .+||+++.+.
T Consensus       845 ~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~~d~ii~~~  883 (895)
T PRK01156        845 NLKDIIEYSLKDSSDIPQVIMISHHRELL-SVADVAYEVK  883 (895)
T ss_pred             HHHHHHHHHHHhcCCCCeEEEEECchHHH-HhcCeEEEEE
Confidence            3556666543332 3 4899999999987 6899999998

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=92.66  E-value=0.12  Score=36.82  Aligned_cols=33  Identities=9%  Similarity=-0.078  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEE
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRV   39 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~dri   39 (107)
                      ..+.++|+... +.|.|+|++|||++++.. ||.+
T Consensus       160 ~~l~~~l~~~~-~~~~tiii~sh~~~~i~~-~~~~  192 (195)
T PRK13541        160 DLLNNLIVMKA-NSGGIVLLSSHLESSIKS-AQIL  192 (195)
T ss_pred             HHHHHHHHHHH-hCCCEEEEEeCCccccch-hhee
Confidence            35566776554 358999999999998754 6655

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=92.58  E-value=0.09  Score=43.04  Aligned_cols=44  Identities=16%  Similarity=0.081  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHh-hcCc-----EEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687           5 HLTLQVIKRFIL-HAKK-----TGFVVEHDFIMATYLSDRVIVFE-GSPSIST   50 (107)
Q Consensus         5 ~~i~~ll~~l~~-~~~~-----tvi~vTHDl~~a~~~~driivl~-g~~~~~g   50 (107)
                      .++.+++.++.. +.|.     ||++.+||++.  .+||++.++. |+++..+
T Consensus       286 ~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls~  336 (438)
T PRK07721        286 AILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFVLDR  336 (438)
T ss_pred             HHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEEec
Confidence            356788888864 3575     99999999995  9999999998 8777664

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=92.08  E-value=0.16  Score=41.65  Aligned_cols=37  Identities=14%  Similarity=0.266  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHH---------HHhhcCEEEEec
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIM---------ATYLSDRVIVFE   43 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~---------a~~~~driivl~   43 (107)
                      +++++++.+.+ .|.|+|+++|+.+.         ...+||.|+.|+
T Consensus       145 ~l~~Li~~L~~-~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~  190 (484)
T TIGR02655       145 EIFRLVARLKQ-IGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR  190 (484)
T ss_pred             HHHHHHHHHHH-CCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence            45667777754 59999999999875         278999999997

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK13695 putative NTPase; Provisional

Probab=92.06  E-value=0.2  Score=35.00  Aligned_cols=57  Identities=11%  Similarity=0.073  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhhhh
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLS   67 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~l~   67 (107)
                      ..++.+..+. +.+.++|+|+|+ ..+..++|++..+.+..+..   .|+++=-+.++.+++
T Consensus       114 ~~~~~l~~~~-~~~~~~i~v~h~-~~~~~~~~~i~~~~~~~i~~---~~~~~r~~~~~~~~~  170 (174)
T PRK13695        114 KFVKAVEEVL-DSEKPVIATLHR-RSVHPFVQEIKSRPGGRVYE---LTPENRDSLPFEILN  170 (174)
T ss_pred             HHHHHHHHHH-hCCCeEEEEECc-hhhHHHHHHHhccCCcEEEE---EcchhhhhHHHHHHH
Confidence            3567777776 468999999999 46668899999998323333   366554444544443

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=91.89  E-value=0.4  Score=34.80  Aligned_cols=33  Identities=24%  Similarity=0.364  Sum_probs=24.5

Q ss_pred             HHHHHHHhhcCcEEEEEeCCHHHHHhh--cCEEEEe
Q psy1687           9 QVIKRFILHAKKTGFVVEHDFIMATYL--SDRVIVF   42 (107)
Q Consensus         9 ~ll~~l~~~~~~tvi~vTHDl~~a~~~--~driivl   42 (107)
                      .+++++.+ .|.|+|++|||++++..+  .+++-.+
T Consensus       129 ~ll~~l~~-~~~tiiivTH~~~~~~~~~~~~~v~~~  163 (199)
T cd03283         129 AVLKFLKN-KNTIGIISTHDLELADLLDLDSAVRNY  163 (199)
T ss_pred             HHHHHHHH-CCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence            35677754 489999999999999876  4555444

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PHA02562 46 endonuclease subunit; Provisional

Probab=91.65  E-value=0.21  Score=40.92  Aligned_cols=35  Identities=20%  Similarity=0.247  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      ..++++|+++   .|.|+|+|||+.+.. ..||++++|.
T Consensus       516 ~~~~~~l~~~---~~~~iiiish~~~~~-~~~d~~~~l~  550 (562)
T PHA02562        516 KALLSILDSL---KDTNVFVISHKDHDP-QKFDRHLKME  550 (562)
T ss_pred             HHHHHHHHhC---CCCeEEEEECchhch-hhhhcEEEEE
Confidence            3466667666   378999999997665 6799999998

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=91.45  E-value=0.51  Score=42.34  Aligned_cols=39  Identities=21%  Similarity=0.144  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           4 LHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      +..+++.|.++.. .|+||++|||+.++..++..+|.|-+
T Consensus       993 ~~~~~~~l~~l~~-~g~~v~iisH~~~l~~~i~~qi~V~k 1031 (1047)
T PRK10246        993 LDTALDALDALNA-SGKTIGVISHVEAMKERIPVQIKVKK 1031 (1047)
T ss_pred             HHHHHHHHHHHHH-CCCEEEEEecHHHHHHhccceEEEEE
Confidence            4678889999965 49999999999999999999999998

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=91.34  E-value=0.17  Score=36.74  Aligned_cols=37  Identities=16%  Similarity=0.306  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCC---------HHHHHhhcCEEEEec
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHD---------FIMATYLSDRVIVFE   43 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHD---------l~~a~~~~driivl~   43 (107)
                      .+.++++.+. +.|.|+++++|.         ...+..+||.+++|+
T Consensus       132 ~l~~l~~~lk-~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~  177 (224)
T TIGR03880       132 ELFRFYSSLR-ETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK  177 (224)
T ss_pred             HHHHHHHHHH-hCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence            4566777775 459999999995         344788999999997

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=91.29  E-value=0.22  Score=35.76  Aligned_cols=37  Identities=14%  Similarity=0.106  Sum_probs=25.0

Q ss_pred             HHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687          10 VIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI   48 (107)
Q Consensus        10 ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~   48 (107)
                      +++.+. +.+.++|++||+.+++. .|+++..+. ++...
T Consensus       133 ll~~l~-~~~~~vi~~tH~~~~~~-~~~~~~~l~~~~~~~  170 (202)
T cd03243         133 VLEHLL-EKGCRTLFATHFHELAD-LPEQVPGVKNLHMEE  170 (202)
T ss_pred             HHHHHH-hcCCeEEEECChHHHHH-HhhcCCCeEEEEEEE
Confidence            345554 34899999999998875 566666555 54443

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>KOG2355|consensus

Probab=91.11  E-value=0.32  Score=37.25  Aligned_cols=43  Identities=14%  Similarity=0.001  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI   48 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~   48 (107)
                      ++++.++.=++++|.|||.+||-.+=.+.|...++.++ |++..
T Consensus       185 dLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~  228 (291)
T KOG2355|consen  185 DLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD  228 (291)
T ss_pred             HHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence            56777888788899999999999999999999999999 87665

>KOG0058|consensus

Probab=91.06  E-value=0.44  Score=41.34  Aligned_cols=50  Identities=20%  Similarity=0.373  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      .+-+.|.++.+  +.|||+|.|-|.-+ +-||+|+|++ |++.-.   |+-++|.+.
T Consensus       642 lVq~aL~~~~~--~rTVlvIAHRLSTV-~~Ad~Ivvi~~G~V~E~---G~h~eLl~~  692 (716)
T KOG0058|consen  642 LVQEALDRLMQ--GRTVLVIAHRLSTV-RHADQIVVIDKGRVVEM---GTHDELLSK  692 (716)
T ss_pred             HHHHHHHHhhc--CCeEEEEehhhhHh-hhccEEEEEcCCeEEec---ccHHHHhhC
Confidence            35566666653  59999999999998 6699999999 877665   577777763

>KOG0055|consensus

Probab=90.40  E-value=0.5  Score=43.26  Aligned_cols=48  Identities=19%  Similarity=0.295  Sum_probs=38.1

Q ss_pred             HHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           7 TLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         7 i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      +-+.|.+..  .|.|+|+|.|-|... +-||.|+|++ |+++-+   ||-++|..
T Consensus      1165 VQeALd~a~--~gRT~IvIAHRLSTI-qnaD~I~Vi~~G~VvE~---GtH~~L~~ 1213 (1228)
T KOG0055|consen 1165 VQEALDRAM--EGRTTIVIAHRLSTI-QNADVIAVLKNGKVVEQ---GTHDELLA 1213 (1228)
T ss_pred             HHHHHHHhh--cCCcEEEEecchhhh-hcCCEEEEEECCEEEec---ccHHHHHh
Confidence            455566653  489999999999997 7799999999 766655   68888776

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=90.13  E-value=0.68  Score=40.55  Aligned_cols=41  Identities=12%  Similarity=0.020  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHH---------hhcCEEEEec-CCC
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMAT---------YLSDRVIVFE-GSP   46 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~---------~~~driivl~-g~~   46 (107)
                      ..+.++++++.+ .|.+++++||+++.+.         ..|++.++|. ++.
T Consensus       672 ~~i~~~lk~~RK-~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a  722 (818)
T PRK13830        672 DKIREWLKVLRK-ANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAA  722 (818)
T ss_pred             HHHHHHHHHHHH-cCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccc
Confidence            356777777754 5889999999999986         6899999997 543

>TIGR00416 sms DNA repair protein RadA

Probab=90.06  E-value=0.38  Score=39.44  Aligned_cols=39  Identities=23%  Similarity=0.216  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHH--------HHhhcCEEEEecC
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIM--------ATYLSDRVIVFEG   44 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~--------a~~~~driivl~g   44 (107)
                      +++..|.+++++.|.|+++++|....        +..++|.++.|++
T Consensus       199 ~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~  245 (454)
T TIGR00416       199 ECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEG  245 (454)
T ss_pred             HHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEec
Confidence            45566788888889999999997654        6789999999983

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=89.20  E-value=0.41  Score=41.83  Aligned_cols=36  Identities=14%  Similarity=0.124  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      ..+.++|++++.  +.++|+||||+++. .+||+++.+.
T Consensus      1130 ~~~~~~~~~~~~--~~~~i~~sh~~~~~-~~~d~~~~~~ 1165 (1179)
T TIGR02168      1130 ERFANLLKEFSK--NTQFIVITHNKGTM-EVADQLYGVT 1165 (1179)
T ss_pred             HHHHHHHHHhcc--CCEEEEEEcChhHH-HHhhhHeeee
Confidence            456778888753  47899999999986 6799998876

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=88.88  E-value=0.43  Score=34.63  Aligned_cols=37  Identities=19%  Similarity=0.118  Sum_probs=27.5

Q ss_pred             HHHHHHHHHhhcCcEEEEEeCCHH--------HHHhhcCEEEEec
Q psy1687           7 TLQVIKRFILHAKKTGFVVEHDFI--------MATYLSDRVIVFE   43 (107)
Q Consensus         7 i~~ll~~l~~~~~~tvi~vTHDl~--------~a~~~~driivl~   43 (107)
                      ++..+.++.++.|.|+++++|...        .+..+||.|+.|+
T Consensus       144 ~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~  188 (229)
T TIGR03881       144 YSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR  188 (229)
T ss_pred             HHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence            344455565677999999999643        3567899999998

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=88.45  E-value=0.68  Score=33.83  Aligned_cols=29  Identities=24%  Similarity=0.308  Sum_probs=22.7

Q ss_pred             HHHHHHHHhhcCcEEEEEeCCHHHHHhhcC
Q psy1687           8 LQVIKRFILHAKKTGFVVEHDFIMATYLSD   37 (107)
Q Consensus         8 ~~ll~~l~~~~~~tvi~vTHDl~~a~~~~d   37 (107)
                      ..+++.+.+. |.++|++||+.+++..+++
T Consensus       131 ~~il~~l~~~-~~~~i~~TH~~~l~~~~~~  159 (204)
T cd03282         131 LAILECLIKK-ESTVFFATHFRDIAAILGN  159 (204)
T ss_pred             HHHHHHHHhc-CCEEEEECChHHHHHHhhc
Confidence            3456666544 8999999999999988775

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=87.97  E-value=0.74  Score=32.73  Aligned_cols=29  Identities=17%  Similarity=0.222  Sum_probs=20.7

Q ss_pred             HHHHHHHhhcCcEEEEEeCCHHHHHhhcCE
Q psy1687           9 QVIKRFILHAKKTGFVVEHDFIMATYLSDR   38 (107)
Q Consensus         9 ~ll~~l~~~~~~tvi~vTHDl~~a~~~~dr   38 (107)
                      .+++.+.++.+.++|++||+.+. ..+||+
T Consensus       102 ~~l~~l~~~~~~~iii~TH~~~l-~~~~~~  130 (185)
T smart00534      102 AVLEYLLEKIGALTLFATHYHEL-TKLADE  130 (185)
T ss_pred             HHHHHHHhcCCCeEEEEecHHHH-HHHhhc
Confidence            45566654348899999999964 567774

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=87.13  E-value=0.92  Score=33.29  Aligned_cols=35  Identities=9%  Similarity=0.094  Sum_probs=23.6

Q ss_pred             HHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           8 LQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         8 ~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      ..+++.+.+..+.++|++||+.++ ..++|++.-+.
T Consensus       132 ~~il~~l~~~~~~~vi~~TH~~~l-~~l~~~~~~v~  166 (216)
T cd03284         132 WAIVEYLHEKIGAKTLFATHYHEL-TELEGKLPRVK  166 (216)
T ss_pred             HHHHHHHHhccCCcEEEEeCcHHH-HHHhhcCCCeE
Confidence            344555544348899999999755 56788765443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=86.41  E-value=1.3  Score=32.30  Aligned_cols=38  Identities=16%  Similarity=0.166  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHH-------HHhhcCEEEEecC
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIM-------ATYLSDRVIVFEG   44 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~-------a~~~~driivl~g   44 (107)
                      ++++.++.+.+ .|.|+++++|+...       +..++|-++.|+.
T Consensus       143 ~~l~~l~~l~~-~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~  187 (234)
T PRK06067        143 NFLTEAKNLVD-LGKTILITLHPYAFSEELLSRIRSICDVYLKLRA  187 (234)
T ss_pred             HHHHHHHHHHh-CCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence            33444555554 48899999997654       6788899988873

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=86.24  E-value=1.3  Score=32.88  Aligned_cols=26  Identities=8%  Similarity=0.112  Sum_probs=21.0

Q ss_pred             HHHHHhhcCcEEEEEeCCHHHHHhhc
Q psy1687          11 IKRFILHAKKTGFVVEHDFIMATYLS   36 (107)
Q Consensus        11 l~~l~~~~~~tvi~vTHDl~~a~~~~   36 (107)
                      ++.+.+..+.++|++||+++++..++
T Consensus       135 l~~L~~~~~~~~i~~TH~~el~~~~~  160 (218)
T cd03286         135 LEYLVKKVKCLTLFSTHYHSLCDEFH  160 (218)
T ss_pred             HHHHHHhcCCcEEEEeccHHHHHHhh
Confidence            55565434899999999999999887

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=85.79  E-value=1.6  Score=36.26  Aligned_cols=50  Identities=20%  Similarity=0.324  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++...|+++.  .|.|-+++-|-+.-... ||.|+||+ |+++-.   |+-++|..
T Consensus       436 ~~iq~~l~~~~--~~rttlviahrlsti~~-adeiivl~~g~i~er---g~h~~ll~  486 (497)
T COG5265         436 QAIQAALREVS--AGRTTLVIAHRLSTIID-ADEIIVLDNGRIVER---GTHEELLA  486 (497)
T ss_pred             HHHHHHHHHHh--CCCeEEEEeehhhhccC-CceEEEeeCCEEEec---CcHHHHHH
Confidence            35666777765  47899999999999855 99999999 766655   68777776

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=85.23  E-value=2.2  Score=35.73  Aligned_cols=42  Identities=24%  Similarity=0.208  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhh-cCEEEEec-CCCc
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYL-SDRVIVFE-GSPS   47 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~-~driivl~-g~~~   47 (107)
                      .+.+-|.+++++.|+|.++|||..++...+ =|+++.+. |+..
T Consensus       545 rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~  588 (593)
T COG2401         545 RVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP  588 (593)
T ss_pred             HHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence            355667777888899999999999999999 68887776 6443

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=85.22  E-value=1.5  Score=38.56  Aligned_cols=41  Identities=17%  Similarity=0.024  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI   48 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~   48 (107)
                      ..+.++|+.+..  +.++|++||+.... .+||+++.+. .+.+.
T Consensus      1115 ~~~~~~l~~~~~--~~~~i~~t~~~~~~-~~~d~~~~~~~~~~g~ 1156 (1164)
T TIGR02169      1115 ERVAKLIREKAG--EAQFIVVSLRSPMI-EYADRAIGVTMRRNGE 1156 (1164)
T ss_pred             HHHHHHHHHhcC--CCeEEEEECcHHHH-HhcceeEeEEEecCCe
Confidence            346677777643  47899999998755 8999999987 43443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=83.11  E-value=1.9  Score=32.07  Aligned_cols=28  Identities=14%  Similarity=0.106  Sum_probs=21.1

Q ss_pred             HHHHHHHHhhcCcEEEEEeCCHHHHHhh
Q psy1687           8 LQVIKRFILHAKKTGFVVEHDFIMATYL   35 (107)
Q Consensus         8 ~~ll~~l~~~~~~tvi~vTHDl~~a~~~   35 (107)
                      ..+++.+.+..+.++|++||+.+++...
T Consensus       133 ~~il~~l~~~~~~~~i~~TH~~~l~~~~  160 (222)
T cd03287         133 YATLHYLLEEKKCLVLFVTHYPSLGEIL  160 (222)
T ss_pred             HHHHHHHHhccCCeEEEEcccHHHHHHH
Confidence            4566666654578999999999997544

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=82.99  E-value=1.3  Score=36.45  Aligned_cols=38  Identities=13%  Similarity=0.149  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHH---------HHHhhcCEEEEecC
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFI---------MATYLSDRVIVFEG   44 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~---------~a~~~~driivl~g   44 (107)
                      .+.++++.+ ++.|.|+++++|+.+         ....+||.++.|+.
T Consensus       155 ~l~~L~~~L-k~~g~TvLlt~~~~~~~~~~~~~~~~~~laDgVI~L~~  201 (509)
T PRK09302        155 ELRRLFAWL-KQKGVTAVITGERGDEYGPLTRYGVEEFVSDCVIILRN  201 (509)
T ss_pred             HHHHHHHHH-HhCCCEEEEEECCccCcCCccccCceEEEeeEEEEEeE
Confidence            344555545 456999999999865         34569999999983

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=82.77  E-value=1.8  Score=28.46  Aligned_cols=26  Identities=8%  Similarity=-0.211  Sum_probs=17.4

Q ss_pred             HHHHHHHHhhcCcEEEEEeCCHHHHH
Q psy1687           8 LQVIKRFILHAKKTGFVVEHDFIMAT   33 (107)
Q Consensus         8 ~~ll~~l~~~~~~tvi~vTHDl~~a~   33 (107)
                      +.-+.+..++.+.|+|+++|..+...
T Consensus       116 l~~l~~~~~~~~~~vv~~~~~~~~~~  141 (165)
T cd01120         116 LRELLERARKGGVTVIFTLQVPSGDK  141 (165)
T ss_pred             HHHHHHHHhcCCceEEEEEecCCccc
Confidence            33334444556999999999876543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>KOG0062|consensus

Probab=80.79  E-value=0.72  Score=39.00  Aligned_cols=37  Identities=19%  Similarity=0.280  Sum_probs=31.0

Q ss_pred             HHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCC
Q psy1687           9 QVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGS   45 (107)
Q Consensus         9 ~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~   45 (107)
                      .+|..+-.+.+.|+|+|+||-++....|..||-+++.
T Consensus       235 ~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~  271 (582)
T KOG0062|consen  235 AWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENL  271 (582)
T ss_pred             HHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhh
Confidence            4555565666789999999999999999999999853

>PRK04296 thymidine kinase; Provisional

Probab=80.46  E-value=7.2  Score=27.84  Aligned_cols=42  Identities=12%  Similarity=0.022  Sum_probs=32.6

Q ss_pred             ccHHHHHHHHHHHHhhcCcEEEEEeCC----------HHHHHhhcCEEEEecC
Q psy1687           2 FPLHLTLQVIKRFILHAKKTGFVVEHD----------FIMATYLSDRVIVFEG   44 (107)
Q Consensus         2 ~~~~~i~~ll~~l~~~~~~tvi~vTHD----------l~~a~~~~driivl~g   44 (107)
                      ||..++.++++.+. ..|++++++-++          ......+||.|.-|+.
T Consensus        90 l~~~~v~~l~~~l~-~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~  141 (190)
T PRK04296         90 LDKEQVVQLAEVLD-DLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKA  141 (190)
T ss_pred             CCHHHHHHHHHHHH-HcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEeeE
Confidence            45556777777664 459999999999          3467789999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	107
3j16_B	608	Models Of Ribosome-Bound Dom34p And Rli1p And Their		7e-33
3bk7_A	607	Structure Of The Complete Abce1RNAASE-L Inhibitor P		1e-23
3j15_B	593	Model Of Ribosome-Bound Archaeal Pelota And Abce1 L		1e-23
1yqt_A	538	Rnase-L Inhibitor Length = 538		7e-21
3ozx_A	538	Crystal Structure Of Abce1 Of Sulfolubus Solfataric		2e-18

>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608

Iteration: 1
 Score =  135 bits (339), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 64/97 (65%), Positives = 78/97 (80%)
Query: 9   QVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSL 68
           +VI+RFILH KKT F+VEHDFIMATYL+D+VIVFEG PS +  A AP++LL G N+FL  
Sbjct: 508 KVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKN 567
Query: 69  LGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYE 105
           L +TFRRDPN+FRPRINK +S  D EQK +G YFF +
Sbjct: 568 LNVTFRRDPNSFRPRINKLDSQMDKEQKSSGNYFFLD 604

>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607

Iteration: 1
 Score =  104 bits (259), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/95 (50%), Positives = 64/95 (67%)
Query: 9   QVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSL 68
           + I+  +   +KT  VVEHD +M  Y+SDR+IVFEG P     A  P  +  GMN+FL+ 
Sbjct: 512 RAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREGMNRFLAS 571
Query: 69  LGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFF 103
           +GITFRRDP++ RPR NK  SVKD EQK  G+Y++
Sbjct: 572 VGITFRRDPDSGRPRANKEGSVKDREQKARGEYYY 606

>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593

Iteration: 1
 Score =  104 bits (259), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/95 (50%), Positives = 64/95 (67%)
Query: 9   QVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSL 68
           + I+  +   +KT  VVEHD +M  Y+SDR+IVFEG P     A  P  +  GMN+FL+ 
Sbjct: 498 RAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREGMNRFLAS 557
Query: 69  LGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFF 103
           +GITFRRDP++ RPR NK  SVKD EQK  G+Y++
Sbjct: 558 VGITFRRDPDSGRPRANKEGSVKDREQKARGEYYY 592

>pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 45/95 (47%), Positives = 58/95 (61%)
Query: 9   QVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSL 68
           + I+      +KT  VVEHD +   Y+SDR+ VFEG P     A  P     G N+FL+ 
Sbjct: 442 RAIRHLXEKNEKTALVVEHDVLXIDYVSDRLXVFEGEPGKYGRALPPXGXREGXNRFLAS 501
Query: 69  LGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFF 103
           +GITFRRDP+  RPR NK  SVKD EQK  G+Y++
Sbjct: 502 IGITFRRDPDTGRPRANKEGSVKDREQKEKGEYYY 536

>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/98 (41%), Positives = 58/98 (59%)
Query: 5   HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNK 64
           ++  + IKR     K   F+++HD  +  Y++DR+IVF+G P  + LA +P  L  GMN+
Sbjct: 422 YIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNE 481
Query: 65  FLSLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYF 102
           FL  L +TFRRD    RPR+NK  S  D  QK  G Y+
Sbjct: 482 FLRELEVTFRRDAETGRPRVNKIGSYLDRVQKERGDYY 519

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	107
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	4e-49
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	5e-09
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	4e-47
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	1e-07
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	1e-46
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	1e-05
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	9e-45
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	2e-06

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score =  163 bits (414), Expect = 4e-49
 Identities = 64/99 (64%), Positives = 78/99 (78%)

Query: 8   LQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLS 67
            +VI+RFILH KKT F+VEHDFIMATYL+D+VIVFEG PS +  A AP++LL G N+FL 
Sbjct: 507 SKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLK 566

Query: 68  LLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
            L +TFRRDPN+FRPRINK +S  D EQK +G YFF + 
Sbjct: 567 NLNVTFRRDPNSFRPRINKLDSQMDKEQKSSGNYFFLDN 605

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 50.8 bits (122), Expect = 5e-09
 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 5/101 (4%)

Query: 8   LQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLS 67
            Q+I+  +L   K    VEHD  +  YLSD V +  G PS+  +   P ++  G+N FL 
Sbjct: 261 AQIIRS-LLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPASVREGINIFLD 319

Query: 68  ----LLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFY 104
                  + FR +   FR      +   D   +        
Sbjct: 320 GHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLK 360

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score =  156 bits (397), Expect = 4e-47
 Identities = 47/96 (48%), Positives = 63/96 (65%)

Query: 8   LQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLS 67
            + I+  +   +KT  VVEHD +M  Y+SDR++VFEG P     A  P  +  GMN+FL+
Sbjct: 441 SRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMREGMNRFLA 500

Query: 68  LLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFF 103
            +GITFRRDP+  RPR NK  SVKD EQK  G+Y++
Sbjct: 501 SIGITFRRDPDTGRPRANKEGSVKDREQKEKGEYYY 536

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 46.9 bits (112), Expect = 1e-07
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 8   LQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLS 67
            + I+R +    K+  VVEHD  +  YLSD + V  G P +  + + P+   NG+N+FL 
Sbjct: 198 ARAIRR-LSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRNGINEFLR 256

Query: 68  LL----GITFRRDPNNFRPRINKNNSVKD 92
                  + FR     F     +    ++
Sbjct: 257 GYLKDENVRFRPYEIKFTKTGERVEIERE 285

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score =  156 bits (396), Expect = 1e-46
 Identities = 48/97 (49%), Positives = 64/97 (65%)

Query: 7   TLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFL 66
             + I+  +   +KT  VVEHD +M  Y+SDR+IVFEG P     A  P  +  GMN+FL
Sbjct: 510 VSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREGMNRFL 569

Query: 67  SLLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFF 103
           + +GITFRRDP++ RPR NK  SVKD EQK  G+Y++
Sbjct: 570 ASVGITFRRDPDSGRPRANKEGSVKDREQKARGEYYY 606

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 5/102 (4%)

Query: 8   LQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLS 67
            +VI R + +  K   VVEHD  +  YLSD + V  G P +  + + P+   NG+N+FL 
Sbjct: 268 ARVI-RRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQ 326

Query: 68  L----LGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYE 105
                  + FR     F     + +  ++   +       Y 
Sbjct: 327 GYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYG 368

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score =  150 bits (381), Expect = 9e-45
 Identities = 41/99 (41%), Positives = 56/99 (56%)

Query: 8   LQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLS 67
            + IKR     K   F+++HD  +  Y++DR+IVF+G P  + LA +P  L  GMN+FL 
Sbjct: 425 AKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLR 484

Query: 68  LLGITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFYEE 106
            L +TFRRD    RPR+NK  S  D  QK  G Y+    
Sbjct: 485 ELEVTFRRDAETGRPRVNKIGSYLDRVQKERGDYYSMVL 523

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 6/101 (5%)

Query: 8   LQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLS 67
            + I+   L   K   VV+HD I+  YL+D + +  G  S+    +       G+N FL 
Sbjct: 178 AKAIRE--LLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARVGINNFLK 235

Query: 68  LL----GITFRRDPNNFRPRINKNNSVKDCEQKRAGQYFFY 104
                  +  R D   F  +   +  +    + +       
Sbjct: 236 GYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKII 276

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	107
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.84
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.81
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.8
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.78
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.05
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	98.9
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	98.87
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	98.85
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.78
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.78
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.78
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.77
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.77
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.77
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.76
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.76
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.73
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	98.73
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.7
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	98.66
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.64
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.6
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.59
1g6h_A	257	High-affinity branched-chain amino acid transport	98.58
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	98.57
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.51
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.5
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.47
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.36
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.36
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.35
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.32
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.31
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.29
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.27
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	98.23
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.23
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.22
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.19
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.17
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.15
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.1
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.08
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.05
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.04
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.01
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.01
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.98
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.95
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	97.95
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.93
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	97.91
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.88
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.86
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	97.86
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.84
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	97.83
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.79
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.76
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.72
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.67
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.64
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.58
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.55
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.55
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.53
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.53
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.53
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	97.5
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.45
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.41
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.24
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.19
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.19
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	97.19
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.99
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.95
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.81
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.74
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.71
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.55
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.38
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.29
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	95.9
1e69_A	322	Chromosome segregation SMC protein; structural mai	95.37
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	94.86
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	94.66
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	94.23
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	94.12
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	94.09
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	93.95
3kta_B	173	Chromosome segregation protein SMC; structural mai	93.76
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	93.67
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	93.48
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	93.22
2r6a_A	454	DNAB helicase, replicative helicase; replication,	93.06
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	93.03
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	92.37
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	91.99
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	91.78
2og2_A	359	Putative signal recognition particle receptor; nuc	91.23
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	90.66
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	90.21
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	88.25
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	87.93
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	87.62
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	82.83
2eyu_A	261	Twitching motility protein PILT; pilus retraction	82.0

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.84  E-value=2.7e-21  Score=159.45  Aligned_cols=102  Identities=63%  Similarity=1.019  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhhhhhcCeeeeeCCCCCccee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLGITFRRDPNNFRPRI   84 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~~~~~~~~~~~i   84 (107)
                      .+++++|++++++.|+|||+||||++++..+|||+++|+|+++.....++|+++.+..+.+++.+++.+++++.+++|++
T Consensus       504 ~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  583 (608)
T 3j16_B          504 IICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNLNVTFRRDPNSFRPRI  583 (608)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHHTCCBCCCTTTCCCCB
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhhhhHHHHhcCceeecCCCCCCceE
Confidence            57889999998767999999999999999999999999965555555589999999988999999999999999999999


Q ss_pred             eeCCChhhHHHHHhCceeeccC
Q psy1687          85 NKNNSVKDCEQKRAGQYFFYEE  106 (107)
Q Consensus        85 ~~~~~~~~~~~k~~~~~~~~~~  106 (107)
                      ++.+|++|++||.+|.|||+++
T Consensus       584 ~~~~s~~d~~q~~~~~~~~~~~  605 (608)
T 3j16_B          584 NKLDSQMDKEQKSSGNYFFLDN  605 (608)
T ss_dssp             CCSSCSHHHHHHTTTCSCCCSS
T ss_pred             eCCCccccHhHHhcCCeEeecc
Confidence            9999999999999999999875

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.81  E-value=6.6e-20  Score=151.02  Aligned_cols=100  Identities=48%  Similarity=0.792  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhhhhhcCeeeeeCCCCCccee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLGITFRRDPNNFRPRI   84 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~~~~~~~~~~~i   84 (107)
                      .+++++|++++++.|+|+|+||||++++..+|||+++|+|+++..+..++|+++.+..+.+++.+++++++++..++|++
T Consensus       508 ~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  587 (607)
T 3bk7_A          508 LAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREGMNRFLASVGITFRRDPDSGRPRA  587 (607)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHTTTTCCEEECTTTCCEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHhhHHHHHHhCCeEEEecCCCCccee
Confidence            56889999998777999999999999999999999999976666666689999998777788889899988888899999


Q ss_pred             eeCCChhhHHHHHhCceeec
Q psy1687          85 NKNNSVKDCEQKRAGQYFFY  104 (107)
Q Consensus        85 ~~~~~~~~~~~k~~~~~~~~  104 (107)
                      ++.+|++|+|||.+|.|||+
T Consensus       588 ~~~~s~~d~~q~~~~~~~~~  607 (607)
T 3bk7_A          588 NKEGSVKDREQKARGEYYYA  607 (607)
T ss_dssp             CCTTCHHHHHHHHTTCCBCC
T ss_pred             cCCcchhHHHHHhcCCcccC
Confidence            99999999999999999995

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.80  E-value=2.6e-19  Score=145.67  Aligned_cols=102  Identities=40%  Similarity=0.662  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhhhhhcCeeeeeCCCCCccee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLGITFRRDPNNFRPRI   84 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~~~~~~~~~~~i   84 (107)
                      .+++++|++++++.|+|||+||||++++..+||||++|+|+++..|..++|..+....+.+++.+++++++++..++|++
T Consensus       422 ~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (538)
T 3ozx_A          422 YIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLRELEVTFRRDAETGRPRV  501 (538)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHHHTCEEEECTTTCCEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHHHHHHHHHhhcceEEEecCCCCCeEE
Confidence            47889999998878999999999999999999999999977777788899999999889999999999999999999999


Q ss_pred             eeCCChhhHHHHHhCceeeccC
Q psy1687          85 NKNNSVKDCEQKRAGQYFFYEE  106 (107)
Q Consensus        85 ~~~~~~~~~~~k~~~~~~~~~~  106 (107)
                      ++..|.+|++||++|.|||++.
T Consensus       502 ~~~~~~~~~~~~~~~~~~~~~~  523 (538)
T 3ozx_A          502 NKIGSYLDRVQKERGDYYSMVL  523 (538)
T ss_dssp             ECTTSHHHHHHHHHTCSEEEEE
T ss_pred             ecCccHHHHHHHhcCceeEeec
Confidence            9999999999999999999874

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.78  E-value=7.9e-19  Score=142.60  Aligned_cols=101  Identities=47%  Similarity=0.786  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhhhhhcCeeeeeCCCCCccee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKFLSLLGITFRRDPNNFRPRI   84 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~l~~~~i~~~~~~~~~~~~i   84 (107)
                      .+++++|++++++.|.|||+||||++++..+|||+++|+++.+..+..++|+++.+..+.++..+++.+.+++..++|.+
T Consensus       438 ~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  517 (538)
T 1yqt_A          438 LAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMREGMNRFLASIGITFRRDPDTGRPRA  517 (538)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHTTTCCEEECTTTCCEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHhhHHHHHhhcCeEEEecCCCCceee
Confidence            46889999997666999999999999999999999999965565555589999987655566677778777777788999


Q ss_pred             eeCCChhhHHHHHhCceeecc
Q psy1687          85 NKNNSVKDCEQKRAGQYFFYE  105 (107)
Q Consensus        85 ~~~~~~~~~~~k~~~~~~~~~  105 (107)
                      ++.+|++|++||++|.|||.+
T Consensus       518 ~~~~~~~~~~~~~~~~~~~~~  538 (538)
T 1yqt_A          518 NKEGSVKDREQKEKGEYYYIA  538 (538)
T ss_dssp             CCTTCHHHHHHHHHTCCBCCC
T ss_pred             ccccchhhHHHHhhcCceecC
Confidence            999999999999999999974

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.05  E-value=5.3e-10  Score=83.51  Aligned_cols=53  Identities=23%  Similarity=0.432  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++.++|+|+||||++++..+|||+++|+ |++...|   +++++.+
T Consensus       184 ~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g---~~~~~~~  237 (266)
T 4g1u_C          184 QHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACG---TPEEVLN  237 (266)
T ss_dssp             HHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEE---CHHHHCC
T ss_pred             HHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEc---CHHHHhC
Confidence            478899999987767899999999999999999999998 8887774   6666543

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=98.90  E-value=1.6e-09  Score=84.82  Aligned_cols=53  Identities=15%  Similarity=0.217  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++.|+|||+||||++++..+|||+++|+ |+++..   |++++++.
T Consensus       200 ~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~---g~~~ev~~  253 (366)
T 3tui_C          200 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ---DTVSEVFS  253 (366)
T ss_dssp             HHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEC---CBHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence            578999999988889999999999999999999999999 887776   57777654

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=98.87  E-value=2.3e-09  Score=84.29  Aligned_cols=53  Identities=25%  Similarity=0.318  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|+++.++.|+|+|+||||+++|..+||||++|+ |++...   ++|+++.+
T Consensus       170 ~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~---g~~~~l~~  223 (381)
T 3rlf_A          170 VQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV---GKPLELYH  223 (381)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE---eCHHHHHh
Confidence            468889999987779999999999999999999999999 877766   68888866

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=98.85  E-value=3.2e-09  Score=82.90  Aligned_cols=53  Identities=21%  Similarity=0.236  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++++.|+++.++.|+|+|+||||+++|..+||||++|+ |++...   |+|+++.+
T Consensus       175 ~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~---g~~~el~~  228 (359)
T 3fvq_A          175 RQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQT---ASPHELYR  228 (359)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEE---eCHHHHHh
Confidence            356677888877779999999999999999999999999 877766   58888776

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.78  E-value=7.4e-09  Score=80.35  Aligned_cols=53  Identities=25%  Similarity=0.232  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++.++|+++.++.|+|+|+||||+++|..+|||+++|+ |++...   ++|+++.+
T Consensus       177 ~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~---g~~~~l~~  230 (353)
T 1oxx_K          177 DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQV---GKPEDLYD  230 (353)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence            468889999987779999999999999999999999999 776655   58888765

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.78  E-value=2.8e-09  Score=80.16  Aligned_cols=53  Identities=15%  Similarity=0.287  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++.|+|||+||||++++..+|||+++|+ |+++..   ++|+++.+
T Consensus       180 ~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~---g~~~~~~~  233 (275)
T 3gfo_A          180 SEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQ---GNPKEVFA  233 (275)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEE---ECHHHHTH
T ss_pred             HHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE---CCHHHHhc
Confidence            478899999974449999999999999999999999998 888877   47777654

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.78  E-value=7.9e-09  Score=80.60  Aligned_cols=53  Identities=23%  Similarity=0.216  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++.++|+++.++.|+|+|+||||+++|..+|||+++|+ |++...   ++|+++.+
T Consensus       170 ~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~---g~~~~~~~  223 (362)
T 2it1_A          170 LEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQV---GTPDEVYY  223 (362)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence            468889999987779999999999999999999999999 776655   68888865

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.77  E-value=8.3e-09  Score=80.65  Aligned_cols=53  Identities=21%  Similarity=0.283  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++.++|+++.++.|+|+|+||||+++|..+|||+++|+ |++...   ++|+++.+
T Consensus       176 ~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~---g~~~~l~~  229 (372)
T 1g29_1          176 VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV---GSPDEVYD  229 (372)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEe---CCHHHHHh
Confidence            467889999987779999999999999999999999999 776655   68888865

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.77  E-value=9.9e-09  Score=79.62  Aligned_cols=53  Identities=19%  Similarity=0.260  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++.++|+++.++.|+|+|+||||+++|..+|||+++|+ |++...   ++|+++.+
T Consensus       164 ~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~---g~~~~~~~  217 (348)
T 3d31_A          164 ENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV---GKPEEIFE  217 (348)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEE---ECHHHHHS
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---CCHHHHHh
Confidence            467889999987779999999999999999999999999 877665   57777764

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.77  E-value=8.8e-09  Score=80.25  Aligned_cols=53  Identities=23%  Similarity=0.291  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++.++|+++.++.|+|+|+||||+++|..+|||+++|+ |++...   ++|+++.+
T Consensus       170 ~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~---g~~~~l~~  223 (359)
T 2yyz_A          170 MIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQY---GTPDEVYD  223 (359)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHHh
Confidence            467889999987779999999999999999999999999 776655   68888765

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.76  E-value=9.5e-09  Score=80.39  Aligned_cols=53  Identities=25%  Similarity=0.273  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++.++|+++.++.|+|+|+||||+++|..+|||+++|+ |++...   ++|+++.+
T Consensus       178 ~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~---g~~~~l~~  231 (372)
T 1v43_A          178 VAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQI---GSPTEVYL  231 (372)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHHh
Confidence            468889999987779999999999999999999999999 776655   68888865

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.76  E-value=9e-09  Score=80.13  Aligned_cols=53  Identities=21%  Similarity=0.254  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++.++|++++++.|+|+|+||||+++|..+|||+++|+ |++...   ++|+++.+
T Consensus       182 ~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~---g~~~~l~~  235 (355)
T 1z47_A          182 RELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQF---GTPEEVYE  235 (355)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence            467889999987779999999999999999999999999 776655   58888765

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.73  E-value=1.3e-08  Score=75.60  Aligned_cols=52  Identities=23%  Similarity=0.355  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++ |+|||+||||++++..+|||+++|+ |++...   ++++++.+
T Consensus       190 ~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~---g~~~~~~~  242 (262)
T 1b0u_A          190 GEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE---GDPEQVFG  242 (262)
T ss_dssp             HHHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHHh
Confidence            4688899999766 9999999999999999999999999 877766   46666643

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=98.73  E-value=1.3e-08  Score=74.84  Aligned_cols=52  Identities=21%  Similarity=0.224  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      .+++++|++++++.|+|||+||||++++..+||++++|+ |++...   ++++++.
T Consensus       163 ~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~---g~~~~~~  215 (240)
T 2onk_A          163 GVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEK---GKLKELF  215 (240)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE---ECHHHHH
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---CCHHHHH
Confidence            468889999976669999999999999999999999999 877666   4666664

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.70  E-value=2.2e-08  Score=74.74  Aligned_cols=52  Identities=27%  Similarity=0.380  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++ |+|||+||||++++..+||++++|+ |++...   ++++++.+
T Consensus       196 ~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~---g~~~~~~~  248 (263)
T 2olj_A          196 GEVLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVLFMDGGYIIEE---GKPEDLFD  248 (263)
T ss_dssp             HHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE---CCHHHHHh
Confidence            4688899999766 9999999999999999999999999 877665   47777653

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=98.66  E-value=2.1e-08  Score=73.35  Aligned_cols=45  Identities=27%  Similarity=0.381  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST   50 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g   50 (107)
                      .+++++|++++++.|+|||+||||++.+ .+|||+++|+ |++...+
T Consensus       182 ~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~  227 (235)
T 3tif_A          182 EKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREE  227 (235)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEc
Confidence            5788999999876799999999999965 7999999998 8776653

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.64  E-value=9e-08  Score=70.80  Aligned_cols=51  Identities=10%  Similarity=0.161  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      .+++++|++++++.|+|+|+||||++++..+||++++|+ |+ ...|   +++++.
T Consensus       165 ~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g---~~~~~~  216 (253)
T 2nq2_C          165 DIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFG---ETRNIL  216 (253)
T ss_dssp             HHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEE---EHHHHC
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecC---CHHHHh
Confidence            467889999876668999999999999999999999999 77 6554   555553

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.60  E-value=4.3e-08  Score=71.81  Aligned_cols=51  Identities=22%  Similarity=0.251  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..++++|+++++ .|+|+|+||||++++..+||++++|+ |++...   ++++++.
T Consensus       176 ~~l~~~l~~~~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~---g~~~~~~  227 (240)
T 1ji0_A          176 SEVFEVIQKINQ-EGTTILLVEQNALGALKVAHYGYVLETGQIVLE---GKASELL  227 (240)
T ss_dssp             HHHHHHHHHHHH-TTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE---EEHHHHH
T ss_pred             HHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE---cCHHHHh
Confidence            467889999876 59999999999999999999999999 777665   4666654

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.59  E-value=5.3e-08  Score=72.02  Aligned_cols=51  Identities=12%  Similarity=0.113  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..++++|++++++ |+|+|+||||++++..+||++++|+ |++...|   +++++.
T Consensus       170 ~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g---~~~~~~  221 (249)
T 2qi9_C          170 SALDKILSALSQQ-GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASG---RREEVL  221 (249)
T ss_dssp             HHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEE---EHHHHS
T ss_pred             HHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC---CHHHHh
Confidence            4678899998766 9999999999999999999999999 7776664   555553

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.58  E-value=2.9e-08  Score=73.38  Aligned_cols=49  Identities=14%  Similarity=0.144  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchh
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQN   57 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~   57 (107)
                      .+++++|++++++ |+|||+||||++++..+|||+++|+ |++...   +++++
T Consensus       190 ~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~---g~~~~  239 (257)
T 1g6h_A          190 HDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE---GRGEE  239 (257)
T ss_dssp             HHHHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEEEEETTEEEEE---EESHH
T ss_pred             HHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEE---eCHHH
Confidence            4688999999765 9999999999999999999999998 777666   46776

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.57  E-value=6.8e-08  Score=71.72  Aligned_cols=52  Identities=17%  Similarity=0.286  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++ |+|||+||||++++..+||++++|+ |++...   ++++++.+
T Consensus       183 ~~l~~~l~~l~~~-g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~---g~~~~~~~  235 (256)
T 1vpl_A          183 REVRKILKQASQE-GLTILVSSHNMLEVEFLCDRIALIHNGTIVET---GTVEELKE  235 (256)
T ss_dssp             HHHHHHHHHHHHT-TCEEEEEECCHHHHTTTCSEEEEEETTEEEEE---EEHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCEEEEEcCCHHHHHHHCCEEEEEECCEEEEe---cCHHHHHH
Confidence            4678899998754 9999999999999999999999999 877766   46666654

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.51  E-value=5.6e-08  Score=72.26  Aligned_cols=52  Identities=23%  Similarity=0.371  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|++++++ |+|||+||||++++..+||++++|+ |++...   ++++++.+
T Consensus       175 ~~l~~~l~~l~~~-g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~---g~~~~~~~  227 (266)
T 2yz2_A          175 TDLLRIVEKWKTL-GKTVILISHDIETVINHVDRVVVLEKGKKVFD---GTRMEFLE  227 (266)
T ss_dssp             HHHHHHHHHHHHT-TCEEEEECSCCTTTGGGCSEEEEEETTEEEEE---EEHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe---CCHHHHhc
Confidence            4678899998766 9999999999999999999999999 777665   46666654

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.50  E-value=1.5e-07  Score=68.22  Aligned_cols=44  Identities=14%  Similarity=0.157  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST   50 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g   50 (107)
                      ..++++|++++++ |+|+|+||||++++ .+||++++|+ |++...|
T Consensus       177 ~~~~~~l~~l~~~-g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g  221 (224)
T 2pcj_A          177 KRVMDIFLKINEG-GTSIVMVTHERELA-ELTHRTLEMKDGKVVGEI  221 (224)
T ss_dssp             HHHHHHHHHHHHT-TCEEEEECSCHHHH-TTSSEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHC-CCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEe
Confidence            4678899999766 99999999999998 8999999998 7776654

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.47  E-value=1.3e-07  Score=70.57  Aligned_cols=52  Identities=12%  Similarity=0.188  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|++++++.|+|||+||||++++.. ||++++|+ |++...   ++++++.+
T Consensus       193 ~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~---g~~~~l~~  245 (271)
T 2ixe_A          193 LRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQ---GTHLQLME  245 (271)
T ss_dssp             HHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEEE---ECHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEE---CCHHHHHh
Confidence            467888888865568999999999999875 99999999 777665   57787765

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.36  E-value=1.9e-07  Score=70.14  Aligned_cols=51  Identities=16%  Similarity=0.143  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHhhcCcEE--EEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTG--FVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tv--i~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      .+++++|++++++ |+||  |+||||++++..+||++++|+ |++...|   +++++.
T Consensus       198 ~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g---~~~~~~  251 (279)
T 2ihy_A          198 ESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQG---AVEDIL  251 (279)
T ss_dssp             HHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEE---EHHHHC
T ss_pred             HHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEEC---CHHHHh
Confidence            4688899999766 9999  999999999999999999999 8777664   555553

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.36  E-value=4.2e-07  Score=74.91  Aligned_cols=51  Identities=22%  Similarity=0.352  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe------c-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF------E-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl------~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++ |+|||+||||++++ .+|||+++|      + |+++..   |+|+++.+
T Consensus       583 ~~i~~~l~~l~~~-g~tvi~vtHd~~~~-~~~d~i~~l~~~~g~~~G~i~~~---g~~~~~~~  640 (670)
T 3ux8_A          583 ARLLDVLHRLVDN-GDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAV---GTPEEVAE  640 (670)
T ss_dssp             HHHHHHHHHHHHT-TCEEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEE---ECHHHHHT
T ss_pred             HHHHHHHHHHHHC-CCEEEEEeCCHHHH-HhCCEEEEecCCcCCCCCEEEEe---cCHHHHHh
Confidence            5788999999765 99999999999987 569999999      5 777777   58888765

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.35  E-value=1.8e-07  Score=69.65  Aligned_cols=52  Identities=17%  Similarity=0.144  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhh-cCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYL-SDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~-~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|+++++ .|+|||+||||++++..+ |||+++|+ |++...   ++++++..
T Consensus       201 ~~l~~~l~~l~~-~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~---g~~~~~~~  254 (267)
T 2zu0_C          201 KVVADGVNSLRD-GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS---GDFTLVKQ  254 (267)
T ss_dssp             HHHHHHHHTTCC-SSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEE---ECTTHHHH
T ss_pred             HHHHHHHHHHHh-cCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEE---cCHHHHhh
Confidence            467788888854 489999999999999887 99999998 877766   47776643

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.32  E-value=8.7e-07  Score=64.82  Aligned_cols=49  Identities=16%  Similarity=0.328  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++++|++++ + |+|+|+||||++.+. .||++++|+ |++...   ++++++.+
T Consensus       177 ~i~~~l~~~~-~-~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~---g~~~~~~~  226 (243)
T 1mv5_A          177 MVQKALDSLM-K-GRTTLVIAHRLSTIV-DADKIYFIEKGQITGS---GKHNELVA  226 (243)
T ss_dssp             HHHHHHHHHH-T-TSEEEEECCSHHHHH-HCSEEEEEETTEECCC---SCHHHHHH
T ss_pred             HHHHHHHHhc-C-CCEEEEEeCChHHHH-hCCEEEEEECCEEEEe---CCHHHHHh
Confidence            5788888886 3 899999999999885 599999999 777665   57777765

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.31  E-value=7.1e-07  Score=68.02  Aligned_cols=51  Identities=18%  Similarity=0.280  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      ..+++.|+++.+  ++|+|+||||++.+.. ||+|++|+ |+++..   |++++|.+.
T Consensus       227 ~~i~~~l~~l~~--~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~---G~~~el~~~  278 (306)
T 3nh6_A          227 RAIQASLAKVCA--NRTTIVVAHRLSTVVN-ADQILVIKDGCIVER---GRHEALLSR  278 (306)
T ss_dssp             HHHHHHHHHHHT--TSEEEEECCSHHHHHT-CSEEEEEETTEEEEE---ECHHHHHHH
T ss_pred             HHHHHHHHHHcC--CCEEEEEEcChHHHHc-CCEEEEEECCEEEEE---CCHHHHHhc
Confidence            357788888753  6899999999999977 99999999 877776   588888763

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.29  E-value=2.1e-06  Score=70.72  Aligned_cols=55  Identities=33%  Similarity=0.473  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|+++.++ |+|||+||||++++..+|||+++|+|+++..|.+..|....+
T Consensus       265 ~~l~~~L~~l~~~-g~tvIivsHdl~~~~~~adri~vl~~~~~~~g~~~~~~~~~~  319 (607)
T 3bk7_A          265 LKVARVIRRLANE-GKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRN  319 (607)
T ss_dssp             HHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEHHH
T ss_pred             HHHHHHHHHHHhc-CCEEEEEecChHHHHhhCCEEEEECCCccccceeccchhHHH
Confidence            4688899999764 999999999999999999999999987777764444444333

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.27  E-value=1.9e-06  Score=71.11  Aligned_cols=60  Identities=32%  Similarity=0.496  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCchhHHHHHHhh
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQNLLNGMNKF   65 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~~L~~~~~~~   65 (107)
                      .+++++|+++.++ |+|||+||||++++..+|||+++|.|.+...|.+..|....+..+.+
T Consensus       258 ~~l~~~l~~l~~~-g~tvi~vtHdl~~~~~~~drv~vl~~~~~~~~~~~~~~~~~~~~~~~  317 (608)
T 3j16_B          258 LNAAQIIRSLLAP-TKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPASVREGINIF  317 (608)
T ss_dssp             HHHHHHHHGGGTT-TCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEeCCccccceecCchhHHHHHHHh
Confidence            4678889988754 89999999999999999999999997777666555565555544433

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=98.23  E-value=7.3e-07  Score=65.61  Aligned_cols=50  Identities=22%  Similarity=0.422  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|+++. + |+|+|+||||++++. .||++++|+ |++...   ++++++.+
T Consensus       182 ~~i~~~l~~~~-~-g~tviivtH~~~~~~-~~d~v~~l~~G~i~~~---g~~~~l~~  232 (247)
T 2ff7_A          182 HVIMRNMHKIC-K-GRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQ---GKHKELLS  232 (247)
T ss_dssp             HHHHHHHHHHH-T-TSEEEEECSSGGGGT-TSSEEEEEETTEEEEE---ECHHHHHT
T ss_pred             HHHHHHHHHHc-C-CCEEEEEeCCHHHHH-hCCEEEEEECCEEEEE---CCHHHHHh
Confidence            46788888884 3 899999999999986 499999999 877666   46766643

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.23  E-value=5.6e-07  Score=66.18  Aligned_cols=48  Identities=17%  Similarity=0.270  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhh-cCEEEEec-CCCcceeecCCch
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYL-SDRVIVFE-GSPSISTLANAPQ   56 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~-~driivl~-g~~~~~g~v~tp~   56 (107)
                      ..++++|+++++ .|+|||+||||++++..+ ||++++|+ |++...|   +++
T Consensus       180 ~~l~~~l~~l~~-~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g---~~~  229 (250)
T 2d2e_A          180 KVVARGVNAMRG-PNFGALVITHYQRILNYIQPDKVHVMMDGRVVATG---GPE  229 (250)
T ss_dssp             HHHHHHHHHHCS-TTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEE---SHH
T ss_pred             HHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEe---CHH
Confidence            467888888855 489999999999999998 59999999 8777664   555

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.22  E-value=2.2e-07  Score=65.65  Aligned_cols=39  Identities=10%  Similarity=-0.106  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      .++.+++++++++.|.|+|+||||+++|..+|||+++|.
T Consensus       164 ~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~  202 (207)
T 1znw_A          164 RRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT  202 (207)
T ss_dssp             HHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence            357788888876678999999999999999999999984

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.19  E-value=2.1e-06  Score=70.70  Aligned_cols=51  Identities=24%  Similarity=0.258  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe------c-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF------E-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl------~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++ |+|||+||||++++. .|||+++|      + |++...   ++|+++.+
T Consensus       241 ~~l~~~l~~l~~~-g~tvi~vtHd~~~~~-~~d~ii~l~~g~~~~~G~i~~~---g~~~~~~~  298 (670)
T 3ux8_A          241 DRLIATLKSMRDL-GNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAA---GTPEEVMN  298 (670)
T ss_dssp             HHHHHHHHHHHHT-TCEEEEECCCHHHHH-HCSEEEEECSSSGGGCCSEEEE---ECHHHHHT
T ss_pred             HHHHHHHHHHHHc-CCEEEEEeCCHHHHh-hCCEEEEecccccccCCEEEEe---cCHHHHhc
Confidence            5788999999754 999999999999875 59999999      5 666666   47776654

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.17  E-value=1.6e-06  Score=74.54  Aligned_cols=51  Identities=22%  Similarity=0.403  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe------c-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF------E-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl------~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|++++++ |.|||+||||++++.. ||+|++|      + |++++.   |+|+++.+
T Consensus       845 ~~L~~lL~~L~~~-G~TVIvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~---Gtpeel~~  902 (916)
T 3pih_A          845 RKLVEVLHRLVDR-GNTVIVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVAT---GTPEEIAK  902 (916)
T ss_dssp             HHHHHHHHHHHHT-TCEEEEECCCHHHHTT-CSEEEEEESSSGGGCCEEEEE---ESHHHHHS
T ss_pred             HHHHHHHHHHHhc-CCEEEEEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEE---cCHHHHHh
Confidence            4678889998754 9999999999999854 9999999      5 666666   69999875

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.15  E-value=1.2e-06  Score=64.95  Aligned_cols=50  Identities=14%  Similarity=0.300  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|+++. + ++|+|+||||++.+. .||++++|+ |++...   ++++++..
T Consensus       192 ~~i~~~l~~l~-~-~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~---g~~~~l~~  242 (260)
T 2ghi_A          192 YLFQKAVEDLR-K-NRTLIIIAHRLSTIS-SAESIILLNKGKIVEK---GTHKDLLK  242 (260)
T ss_dssp             HHHHHHHHHHT-T-TSEEEEECSSGGGST-TCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred             HHHHHHHHHhc-C-CCEEEEEcCCHHHHH-hCCEEEEEECCEEEEE---CCHHHHHh
Confidence            46778888884 3 799999999999985 599999999 777665   57777754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.10  E-value=5.1e-06  Score=67.49  Aligned_cols=50  Identities=24%  Similarity=0.395  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCcceeecCCch
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSISTLANAPQ   56 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g~v~tp~   56 (107)
                      .++.++|+++. + |+|||+||||++++..+||++++|+|+.+..|....+.
T Consensus       175 ~~l~~~l~~l~-~-g~tii~vsHdl~~~~~~~d~i~vl~~~~~~~g~~~~~~  224 (538)
T 3ozx_A          175 MNMAKAIRELL-K-NKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSY  224 (538)
T ss_dssp             HHHHHHHHHHC-T-TSEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred             HHHHHHHHHHh-C-CCEEEEEEeChHHHHhhCCEEEEecCCcccccccchhh
Confidence            46788888885 3 89999999999999999999999996555555333443

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.08  E-value=1.3e-06  Score=64.99  Aligned_cols=49  Identities=20%  Similarity=0.312  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcC-EEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSD-RVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~d-riivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|++++   . |+|+||||++++..+|| ++++|+ |++...   ++++++.+
T Consensus       165 ~~l~~~L~~~~---~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~---g~~~~l~~  215 (263)
T 2pjz_A          165 HVISRYIKEYG---K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGP---ISVSELLE  215 (263)
T ss_dssp             HHHHHHHHHSC---S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEE---EEHHHHHT
T ss_pred             HHHHHHHHHhc---C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEe---cCHHHHHh
Confidence            35666666663   2 99999999999999999 999999 777665   57777764

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.05  E-value=9.8e-06  Score=65.66  Aligned_cols=45  Identities=33%  Similarity=0.466  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCccee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPSIST   50 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~~~g   50 (107)
                      .+++++|+++.+ .|+|||+||||++++..+|||+++|+++.+..|
T Consensus       195 ~~l~~~L~~l~~-~g~tvi~vsHd~~~~~~~~dri~vl~~~~~~~~  239 (538)
T 1yqt_A          195 LNAARAIRRLSE-EGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYG  239 (538)
T ss_dssp             HHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred             HHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEcCcccccc
Confidence            468889999976 499999999999999999999999985555444

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.04  E-value=4.6e-06  Score=71.21  Aligned_cols=51  Identities=18%  Similarity=0.239  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe------c-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF------E-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl------~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++ |.|||+||||++++ .+|||+++|      + |+++..   ++|+++.+
T Consensus       770 ~~l~~lL~~L~~~-G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~---g~~~el~~  827 (842)
T 2vf7_A          770 ERLQRQLVKLVDA-GNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQ---GTPAEVAQ  827 (842)
T ss_dssp             HHHHHHHHHHHHT-TCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEE---ECHHHHTT
T ss_pred             HHHHHHHHHHHhC-CCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEE---cCHHHHHh
Confidence            5688889999754 99999999999999 789999999      4 666665   57777654

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.01  E-value=6.4e-06  Score=67.23  Aligned_cols=50  Identities=16%  Similarity=0.272  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.+.|+++.  .|+|+|+||||++.+.. ||+|++|+ |+++..   |+++++.+
T Consensus       528 ~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~---g~~~~l~~  578 (598)
T 3qf4_B          528 KSIQAAMWKLM--EGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEM---GKHDELIQ  578 (598)
T ss_dssp             HHHHHHHHHHH--TTSEEEEESCCTTHHHH-CSEEEEECSSSEEEC---SCHHHHHH
T ss_pred             HHHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEE---CCHHHHHh
Confidence            35677888874  38999999999999865 99999999 877766   68888876

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.01  E-value=5.5e-06  Score=67.56  Aligned_cols=51  Identities=24%  Similarity=0.381  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      .++++.|+++.  .|+|+|+||||++.+. .||||++|+ |+++..   |++++|.+.
T Consensus       516 ~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~---g~~~el~~~  567 (587)
T 3qf4_A          516 KRILDGLKRYT--KGCTTFIITQKIPTAL-LADKILVLHEGKVAGF---GTHKELLEH  567 (587)
T ss_dssp             HHHHHHHHHHS--TTCEEEEEESCHHHHT-TSSEEEEEETTEEEEE---ECHHHHHHH
T ss_pred             HHHHHHHHHhC--CCCEEEEEecChHHHH-hCCEEEEEECCEEEEE---CCHHHHHhC
Confidence            35677777763  4899999999999985 899999999 877766   589988763

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.98  E-value=6.1e-06  Score=71.02  Aligned_cols=51  Identities=24%  Similarity=0.291  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe------c-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF------E-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl------~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|+++.++ |.|||+||||++++.. ||+|++|      + |++++.   |+|+++.+
T Consensus       503 ~~l~~~L~~L~~~-G~TvivVtHd~~~~~~-aD~ii~lgpgag~~~G~iv~~---G~~~e~~~  560 (916)
T 3pih_A          503 ERLIKTLKKLRDL-GNTVIVVEHDEEVIRN-ADHIIDIGPGGGTNGGRVVFQ---GTVDELLK  560 (916)
T ss_dssp             HHHHHHHHHTTTT-TCEEEEECCCHHHHHT-CSEEEEEESSSGGGCSEEEEE---ECHHHHHH
T ss_pred             HHHHHHHHHHHhc-CCEEEEEeCCHHHHHh-CCEEEEEcCCcccCCCEEEEe---echhhhhc
Confidence            5788999999654 9999999999999865 9999999      5 656666   57877754

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=97.95  E-value=9.5e-06  Score=65.87  Aligned_cols=50  Identities=18%  Similarity=0.276  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.+.|+++.  .|+|+|+||||++.+. .||++++|+ |++...   |+++++.+
T Consensus       517 ~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~---g~~~~l~~  567 (582)
T 3b5x_A          517 RAIQAALDELQ--KNKTVLVIAHRLSTIE-QADEILVVDEGEIIER---GRHADLLA  567 (582)
T ss_pred             HHHHHHHHHHc--CCCEEEEEecCHHHHH-hCCEEEEEECCEEEEE---CCHHHHHh
Confidence            35677888774  3899999999999986 699999999 877665   68888765

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.93  E-value=1.2e-05  Score=69.71  Aligned_cols=51  Identities=22%  Similarity=0.342  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe------c-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF------E-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl------~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|+++++ .|.|||+||||++++ .+|||+++|      + |+++..   ++|+++.+
T Consensus       885 ~~l~~lL~~L~~-~G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~---g~~~el~~  942 (972)
T 2r6f_A          885 ARLLDVLHRLVD-NGDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAV---GTPEEVAE  942 (972)
T ss_dssp             HHHHHHHHHHHH-TTCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEE---ESHHHHHT
T ss_pred             HHHHHHHHHHHh-CCCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEe---cCHHHHHh
Confidence            468888999875 499999999999997 589999999      4 666665   58887764

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=97.91  E-value=4e-06  Score=65.84  Aligned_cols=51  Identities=18%  Similarity=0.158  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      .++.++|+++.  .++|+|+||||++ +...||||++|+ |++...   ++|+++.+.
T Consensus       192 ~~l~~~l~~~~--~~~tvi~vtHd~e-~~~~aDri~vl~~G~i~~~---g~~~el~~~  243 (390)
T 3gd7_A          192 QIIRRTLKQAF--ADCTVILCEARIE-AMLECDQFLVIEENKVRQY---DSILELYHY  243 (390)
T ss_dssp             HHHHHHHHTTT--TTSCEEEECSSSG-GGTTCSEEEEEETTEEEEE---SSHHHHHHC
T ss_pred             HHHHHHHHHHh--CCCEEEEEEcCHH-HHHhCCEEEEEECCEEEEE---CCHHHHHhC
Confidence            35666676653  4799999999986 456799999999 776655   799998763

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=97.88  E-value=9e-06  Score=66.02  Aligned_cols=50  Identities=18%  Similarity=0.288  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++.+.|+++.+  |+|+|+||||++.+. .||++++|+ |++...   |+++++.+
T Consensus       517 ~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~---g~~~~l~~  567 (582)
T 3b60_A          517 RAIQAALDELQK--NRTSLVIAHRLSTIE-QADEIVVVEDGIIVER---GTHSELLA  567 (582)
T ss_dssp             HHHHHHHHHHHT--TSEEEEECSCGGGTT-TCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred             HHHHHHHHHHhC--CCEEEEEeccHHHHH-hCCEEEEEECCEEEEe---cCHHHHHH
Confidence            357788888753  899999999999885 699999999 777665   58888865

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=97.86  E-value=1.1e-05  Score=62.28  Aligned_cols=41  Identities=20%  Similarity=0.152  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS   47 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~   47 (107)
                      ..++++|+++++ .|.|||+||||+++ ...||++++|+ |+++
T Consensus       322 ~~~~~~l~~l~~-~g~tvi~itH~~~~-~~~~d~~~~l~~G~i~  363 (365)
T 3qf7_A          322 EKIASVLKELER-LNKVIVFITHDREF-SEAFDRKLRITGGVVV  363 (365)
T ss_dssp             HHHHHHHHGGGG-SSSEEEEEESCHHH-HTTCSCEEEEETTEEC
T ss_pred             HHHHHHHHHHHh-CCCEEEEEecchHH-HHhCCEEEEEECCEEE
Confidence            467888888865 49999999999999 67899999998 6543

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.84  E-value=6e-06  Score=59.89  Aligned_cols=38  Identities=21%  Similarity=0.327  Sum_probs=31.4

Q ss_pred             CcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687          19 KKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus        19 ~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      |+|+|+||||++++. .||++++|+ |++...   ++++++.+
T Consensus       180 ~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~---g~~~~~~~  218 (229)
T 2pze_A          180 NKTRILVTSKMEHLK-KADKILILHEGSSYFY---GTFSELQN  218 (229)
T ss_dssp             TSEEEEECCCHHHHH-HCSEEEEEETTEEEEE---ECHHHHHT
T ss_pred             CCEEEEEcCChHHHH-hCCEEEEEECCEEEEE---CCHHHHHh
Confidence            789999999999986 599999999 777665   47776654

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=97.83  E-value=1e-05  Score=65.72  Aligned_cols=50  Identities=18%  Similarity=0.365  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..+.+.|+++.  .++|+|+||||++.+. .|||+++|+ |++...   |+++++.+
T Consensus       514 ~~i~~~l~~~~--~~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~---g~~~el~~  564 (578)
T 4a82_A          514 SIIQEALDVLS--KDRTTLIVAHRLSTIT-HADKIVVIENGHIVET---GTHRELIA  564 (578)
T ss_dssp             HHHHHHHHHHT--TTSEEEEECSSGGGTT-TCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred             HHHHHHHHHHc--CCCEEEEEecCHHHHH-cCCEEEEEECCEEEEE---CCHHHHHh
Confidence            35667777774  3789999999999985 599999999 877766   58888876

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.79  E-value=5.3e-06  Score=60.52  Aligned_cols=39  Identities=31%  Similarity=0.348  Sum_probs=32.5

Q ss_pred             cCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687          18 AKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus        18 ~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .|+|+|+||||++++. .||++++|+ |++...   ++++++.+
T Consensus       178 ~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~~---g~~~~~~~  217 (237)
T 2cbz_A          178 KNKTRILVTHSMSYLP-QVDVIIVMSGGKISEM---GSYQELLA  217 (237)
T ss_dssp             TTSEEEEECSCSTTGG-GSSEEEEEETTEEEEE---ECHHHHHH
T ss_pred             CCCEEEEEecChHHHH-hCCEEEEEeCCEEEEe---CCHHHHhh
Confidence            3899999999999975 799999999 777665   57777765

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.72  E-value=3.2e-05  Score=66.97  Aligned_cols=51  Identities=24%  Similarity=0.291  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe------c-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF------E-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl------~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|++|. +.|.|||+|+||++++. .||+|++|      + |++++.   |+|+++.+
T Consensus       543 ~~L~~~L~~Lr-~~G~TVIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv~~---G~~~e~~~  600 (972)
T 2r6f_A          543 DRLIATLKSMR-DLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAA---GTPEEVMN  600 (972)
T ss_dssp             HHHHHHHHHHH-TTTCEEEEECCCHHHHH-SCSEEEEECSSSGGGCCSEEEE---ECTTTTTT
T ss_pred             HHHHHHHHHHH-hCCCEEEEEecCHHHHH-hCCEEEEeCCCccCCCCEEEEe---cCHHHHHh
Confidence            56888899995 46999999999999875 79999999      4 666666   46666543

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.67  E-value=3.8e-06  Score=60.75  Aligned_cols=41  Identities=10%  Similarity=0.123  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCC
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSP   46 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~   46 (107)
                      .+++++|++++++ |+|||+||||++++..+||+++++.+++
T Consensus       170 ~~l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~v~~~~~~~  210 (214)
T 1sgw_A          170 HKVLKSILEILKE-KGIVIISSREELSYCDVNENLHKYSTKI  210 (214)
T ss_dssp             HHHHHHHHHHHHH-HSEEEEEESSCCTTSSEEEEGGGGBC--
T ss_pred             HHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEeCCcc
Confidence            5688899998755 8999999999999999999999887643

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.58  E-value=4.8e-05  Score=57.30  Aligned_cols=39  Identities=23%  Similarity=0.339  Sum_probs=32.4

Q ss_pred             cCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687          18 AKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus        18 ~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .|+|||+||||++++. .||++++|+ |++...   ++++++.+
T Consensus       208 ~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~---g~~~~l~~  247 (290)
T 2bbs_A          208 ANKTRILVTSKMEHLK-KADKILILHEGSSYFY---GTFSELQN  247 (290)
T ss_dssp             TTSEEEEECCCHHHHH-HSSEEEEEETTEEEEE---ECHHHHHH
T ss_pred             CCCEEEEEecCHHHHH-cCCEEEEEECCeEEEe---CCHHHHhh
Confidence            3899999999999985 599999999 777665   57777754

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.55  E-value=3.2e-05  Score=68.21  Aligned_cols=50  Identities=18%  Similarity=0.284  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      .+.+.|+++.  .|+|+|+||||++.+. .||||++|+ |++...   |+|++|.+.
T Consensus      1209 ~i~~~l~~~~--~~~tvi~isH~l~~i~-~~dri~vl~~G~i~~~---g~~~~l~~~ 1259 (1284)
T 3g5u_A         1209 VVQEALDKAR--EGRTCIVIAHRLSTIQ-NADLIVVIQNGKVKEH---GTHQQLLAQ 1259 (1284)
T ss_dssp             HHHHHHHHHS--SSSCEEEECSCTTGGG-SCSEEEEEETBEEEEE---ECHHHHHHS
T ss_pred             HHHHHHHHhC--CCCEEEEEecCHHHHH-cCCEEEEEECCEEEEE---CCHHHHHhC
Confidence            5667776642  4899999999999985 599999999 877766   699998763

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.55  E-value=0.0001  Score=62.94  Aligned_cols=51  Identities=24%  Similarity=0.323  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe------c-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF------E-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl------~-g~~~~~g~v~tp~~L~~   60 (107)
                      ..++++|++|.+ .|.|||+|+||++++ ..||+|++|      . |+++..   ++|+++.+
T Consensus       418 ~~L~~~l~~L~~-~G~TVIvVeHdl~~l-~~aD~ii~lgpgaG~~~G~iv~~---g~~~~~~~  475 (842)
T 2vf7_A          418 EALLSALENLKR-GGNSLFVVEHDLDVI-RRADWLVDVGPEAGEKGGEILYS---GPPEGLKH  475 (842)
T ss_dssp             HHHHHHHHHHHT-TTCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEE---ECGGGGGG
T ss_pred             HHHHHHHHHHHH-cCCEEEEEcCCHHHH-HhCCEEEEeCCCcccCCCEEEEe---cCHHHHHh
Confidence            567888889865 599999999999976 579999999      4 555555   56766654

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.53  E-value=0.00011  Score=54.18  Aligned_cols=41  Identities=22%  Similarity=0.151  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCH--H--------------------HHHhhcCEEEEec-CC
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDF--I--------------------MATYLSDRVIVFE-GS   45 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl--~--------------------~a~~~~driivl~-g~   45 (107)
                      .++++.|++++++.|+|||++||+.  +                    .+..+||+|++|. |+
T Consensus       173 ~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~  236 (296)
T 1cr0_A          173 DNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQ  236 (296)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC-
T ss_pred             HHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCc
Confidence            4688889999888899999999994  6                    7888999999998 54

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.53  E-value=0.00013  Score=50.59  Aligned_cols=41  Identities=15%  Similarity=0.082  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHhhcCcEEEEEeCCH--------HHHHhhcCEEEEecC
Q psy1687           4 LHLTLQVIKRFILHAKKTGFVVEHDF--------IMATYLSDRVIVFEG   44 (107)
Q Consensus         4 ~~~i~~ll~~l~~~~~~tvi~vTHDl--------~~a~~~~driivl~g   44 (107)
                      ..++++.|++++++.|.|+|+++|+.        ..+..+||++++|+.
T Consensus       143 ~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~  191 (235)
T 2w0m_A          143 ARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR  191 (235)
T ss_dssp             HHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence            36788899999887899999999999        568999999999983

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.53  E-value=0.00014  Score=55.76  Aligned_cols=42  Identities=17%  Similarity=0.125  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe----c-CCCcce
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF----E-GSPSIS   49 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl----~-g~~~~~   49 (107)
                      ..+.++|+++.  .|.|||+||||++++ .+||++++|    + |+....
T Consensus       334 ~~l~~~L~~l~--~~~~vi~itH~~~~~-~~~d~i~~l~k~~~~G~~~~~  380 (415)
T 4aby_A          334 IAVAEQLSRLA--DTRQVLVVTHLAQIA-ARAHHHYKVEKQVEDGRTVSH  380 (415)
T ss_dssp             HHHHHHHHHHT--TTSEEEEECSCHHHH-TTCSEEEEEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHh--CCCEEEEEeCcHHHH-hhcCeEEEEEEeccCCceEEE
Confidence            46778888886  389999999999887 579999999    6 654443

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=97.50  E-value=9.8e-05  Score=50.55  Aligned_cols=37  Identities=19%  Similarity=0.281  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      ..+.++|+++.++ |.|+|+||||+ .+..+||++++|+
T Consensus       100 ~~l~~~l~~~~~~-~~tiiivsH~~-~~~~~~d~ii~l~  136 (148)
T 1f2t_B          100 RKLITIMERYLKK-IPQVILVSHDE-ELKDAADHVIRIS  136 (148)
T ss_dssp             HHHHHHHHHTGGG-SSEEEEEESCG-GGGGGCSEEEEEE
T ss_pred             HHHHHHHHHHHcc-CCEEEEEEChH-HHHHhCCEEEEEE
Confidence            4567788887654 89999999999 4678999999996

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.45  E-value=0.00017  Score=63.69  Aligned_cols=50  Identities=14%  Similarity=0.234  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      .+.+.++++.  .|+|+|+|||+++.+.. ||+|++|+ |+++..   |++++|.+.
T Consensus       564 ~i~~~l~~~~--~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~---g~~~~l~~~  614 (1284)
T 3g5u_A          564 VVQAALDKAR--EGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQ---GNHDELMRE  614 (1284)
T ss_dssp             HHHHHHHHHH--TTSEEEEECSCHHHHTT-CSEEEECSSSCCCCE---ECHHHHHHT
T ss_pred             HHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEE---CCHHHHHhC
Confidence            3555666553  48999999999999966 99999999 888776   588888763

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.41  E-value=0.00019  Score=62.23  Aligned_cols=48  Identities=10%  Similarity=0.197  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCc-ceeecCCchhHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPS-ISTLANAPQNLLN   60 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~-~~g~v~tp~~L~~   60 (107)
                      .+.++|++    .|.|+|+||||++++..+||++++|+ |++. ..   |+++++.+
T Consensus       586 ~l~~~L~~----~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~---G~~~e~~~  635 (986)
T 2iw3_A          586 WLVNYLNT----CGITSITISHDSVFLDNVCEYIINYEGLKLRKYK---GNFTEFVK  635 (986)
T ss_dssp             HHHHHHHH----SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEE---SCHHHHHH
T ss_pred             HHHHHHHh----CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCC---CCHHHHHh
Confidence            34445544    58999999999999999999999999 6654 34   56666653

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.24  E-value=0.00039  Score=48.41  Aligned_cols=39  Identities=10%  Similarity=-0.000  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeC----CHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEH----DFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTH----Dl~~a~~~~driivl~   43 (107)
                      .++++.|++++++.|+|||+|||    +-..+..+||++++|+
T Consensus       156 ~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~  198 (231)
T 4a74_A          156 AKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLR  198 (231)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEE
Confidence            36888888888888999999999    5555999999999998

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.19  E-value=0.00027  Score=56.56  Aligned_cols=38  Identities=13%  Similarity=0.251  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHH---------HhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMA---------TYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a---------~~~~driivl~   43 (107)
                      .+++++++++++ .|+|+|++|||++++         ..+||++++|+
T Consensus       162 ~~l~~ll~~l~~-~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~  208 (525)
T 1tf7_A          162 RELFRLVARLKQ-IGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR  208 (525)
T ss_dssp             HHHHHHHHHHHH-HTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred             HHHHHHHHHHHH-CCCEEEEEecCCCCccccccccceeeeeeEEEEEE
Confidence            468888988876 499999999999984         67799999997

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.19  E-value=0.00033  Score=60.79  Aligned_cols=34  Identities=15%  Similarity=0.187  Sum_probs=28.4

Q ss_pred             hcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687          17 HAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST   50 (107)
Q Consensus        17 ~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g   50 (107)
                      +.+.|||+||||++++..+||++++|+ |++...|
T Consensus       946 ~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G  980 (986)
T 2iw3_A          946 EFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSG  980 (986)
T ss_dssp             SCSSEEEEECSCHHHHTTTCCEEECCBTTBCCC--
T ss_pred             HhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence            346799999999999999999999998 7776554

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=97.19  E-value=0.00048  Score=55.03  Aligned_cols=36  Identities=17%  Similarity=0.105  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      ..+.++|+++++  |.|||+||||++++. +||++++|.
T Consensus       436 ~~i~~~l~~~~~--~~~vi~itH~~~~~~-~~d~~~~~~  471 (517)
T 4ad8_A          436 IAVAEQLSRLAD--TRQVLVVTHLAQIAA-RAHHHYKVE  471 (517)
T ss_dssp             HHHHHHHHHHHH--HSEEEEECCCHHHHH-HSSEEEEEE
T ss_pred             HHHHHHHHHHhC--CCEEEEEecCHHHHH-hCCEEEEEe
Confidence            467888998864  799999999999886 699999997

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.99  E-value=0.00025  Score=62.71  Aligned_cols=48  Identities=17%  Similarity=0.233  Sum_probs=38.4

Q ss_pred             HHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           7 TLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         7 i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      |.+.|+++.  .|+|+|+|+|.++.+ .-||||+||+ |+++..   |+|++|.+
T Consensus      1256 Iq~~l~~~~--~~~TvI~IAHRLsTi-~~aD~I~Vld~G~IvE~---Gth~eLl~ 1304 (1321)
T 4f4c_A         1256 VQEALDRAR--EGRTCIVIAHRLNTV-MNADCIAVVSNGTIIEK---GTHTQLMS 1304 (1321)
T ss_dssp             HHHHHTTTS--SSSEEEEECSSSSTT-TTCSEEEEESSSSEEEE---ECHHHHHH
T ss_pred             HHHHHHHHc--CCCEEEEeccCHHHH-HhCCEEEEEECCEEEEE---CCHHHHHh
Confidence            445555443  489999999999987 5699999999 877766   69999987

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.95  E-value=0.00048  Score=60.96  Aligned_cols=50  Identities=14%  Similarity=0.216  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      +.+.+.|.++.  .|+|+|+|||++..+ ..||+|++|+ |+++..   |+.++|.+
T Consensus       591 ~~i~~~l~~~~--~~~T~iiiaHrls~i-~~aD~Iivl~~G~ive~---Gth~eL~~  641 (1321)
T 4f4c_A          591 GIVQQALDKAA--KGRTTIIIAHRLSTI-RNADLIISCKNGQVVEV---GDHRALMA  641 (1321)
T ss_dssp             HHHHHHHHHHH--TTSEEEEECSCTTTT-TTCSEEEEEETTEEEEE---ECHHHHHT
T ss_pred             HHHHHHHHHHh--CCCEEEEEcccHHHH-HhCCEEEEeeCCeeecc---CCHHHHHH
Confidence            35667777765  489999999999976 6799999999 877776   58888875

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.81  E-value=0.00092  Score=53.29  Aligned_cols=48  Identities=6%  Similarity=-0.025  Sum_probs=37.4

Q ss_pred             HHHHHHHhhcCcEEEEEeCCHH------HHHhhcCE-----EEEec--CCCcceeecCCchhHHH
Q psy1687           9 QVIKRFILHAKKTGFVVEHDFI------MATYLSDR-----VIVFE--GSPSISTLANAPQNLLN   60 (107)
Q Consensus         9 ~ll~~l~~~~~~tvi~vTHDl~------~a~~~~dr-----iivl~--g~~~~~g~v~tp~~L~~   60 (107)
                      +.|.++.++.++|+|+||||.+      ++..+|||     +++|+  |++. .   ++++++.+
T Consensus       278 ~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~---g~~~~~~~  338 (460)
T 2npi_A          278 AELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-A---VDDVYKRS  338 (460)
T ss_dssp             HHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-C---CCHHHHHH
T ss_pred             HHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-E---CCHHHHhh
Confidence            4566666666899999999988      88999999     99996  5555 5   57777743

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.74  E-value=0.0006  Score=46.63  Aligned_cols=30  Identities=7%  Similarity=-0.165  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhh
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYL   35 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~   35 (107)
                      .++.++|++++++ |.|+|+||||++++..+
T Consensus       136 ~~l~~~l~~l~~~-g~tvi~vtH~~~~~~~~  165 (171)
T 4gp7_A          136 QQMKKSIKGLQRE-GFRYVYILNSPEEVEEV  165 (171)
T ss_dssp             HHHHHHSTTHHHH-TCSEEEEECSHHHHHHE
T ss_pred             HHhhhhhhhHHhc-CCcEEEEeCCHHHhhhh
Confidence            4556777777666 99999999999999763

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.71  E-value=0.0019  Score=48.89  Aligned_cols=37  Identities=19%  Similarity=0.275  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      ..++++|+++..+ |.|+|+||||.+ +..+||++++|.
T Consensus       291 ~~l~~~l~~~~~~-~~~vi~~sH~~~-~~~~~d~~~~l~  327 (339)
T 3qkt_A          291 RKLITIMERYLKK-IPQVILVSHDEE-LKDAADHVIRIS  327 (339)
T ss_dssp             HHHHHHHHHTGGG-SSEEEEEESCGG-GGGGCSEEEEEE
T ss_pred             HHHHHHHHHHHhc-CCEEEEEEChHH-HHHhCCEEEEEE
Confidence            4577888888654 789999999965 578999999997

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.55  E-value=0.0027  Score=43.77  Aligned_cols=40  Identities=13%  Similarity=0.154  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHH-------------HHHhhcCEEEEecC
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFI-------------MATYLSDRVIVFEG   44 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~-------------~a~~~~driivl~g   44 (107)
                      .++++.|++++++.|.|+|+++|...             .+..+||++++|+.
T Consensus       132 ~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~  184 (220)
T 2cvh_A          132 SRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDK  184 (220)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEE
Confidence            45667788888888999999999876             56789999999983

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.38  E-value=0.0013  Score=52.58  Aligned_cols=39  Identities=13%  Similarity=0.161  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCH----------HHHHhhcCEEEEec-CC
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDF----------IMATYLSDRVIVFE-GS   45 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl----------~~a~~~~driivl~-g~   45 (107)
                      .+.++++.+++ .|+|+|+|+||.          +.+..+||++++|. |+
T Consensus       395 ~i~~ll~~l~~-~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          395 FVIGVTGYAKQ-EEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE  444 (525)
T ss_dssp             HHHHHHHHHHH-TTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred             HHHHHHHHHHh-CCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence            46677777754 599999999999          88889999999998 64

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.29  E-value=0.0061  Score=42.62  Aligned_cols=40  Identities=10%  Similarity=0.009  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHhhcCcEEEEEeCCHHHHHh-------------------hcCEEEEec
Q psy1687           4 LHLTLQVIKRFILHAKKTGFVVEHDFIMATY-------------------LSDRVIVFE   43 (107)
Q Consensus         4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~-------------------~~driivl~   43 (107)
                      +.+++..|++++++.|.|||+++|.......                   +||.+++|+
T Consensus       149 ~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~  207 (243)
T 1n0w_A          149 LARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLR  207 (243)
T ss_dssp             HHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEE
Confidence            3467777888887789999999998766543                   899999998

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=95.90  E-value=0.0041  Score=54.05  Aligned_cols=41  Identities=20%  Similarity=0.122  Sum_probs=34.9

Q ss_pred             HHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEecCCCc
Q psy1687           7 TLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFEGSPS   47 (107)
Q Consensus         7 i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~g~~~   47 (107)
                      +..+|+.++++.|.++|++|||++++..+||++.+++|+..
T Consensus       890 ~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~g~~~  930 (1022)
T 2o8b_B          890 ANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMA  930 (1022)
T ss_dssp             HHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEEEEEE
T ss_pred             HHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceeecCeEE
Confidence            56788888765689999999999999999999988876544

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.37  E-value=0.017  Score=43.23  Aligned_cols=36  Identities=14%  Similarity=0.131  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEE--EEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRV--IVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~dri--ivl~   43 (107)
                      ..++++|+++.  .|.|+|++||+.+ +..+||++  ++|.
T Consensus       260 ~~l~~~l~~~~--~~~~vi~~tH~~~-~~~~~d~~~~v~~~  297 (322)
T 1e69_A          260 ERFKRLLKENS--KHTQFIVITHNKI-VMEAADLLHGVTMV  297 (322)
T ss_dssp             HHHHHHHHHHT--TTSEEEEECCCTT-GGGGCSEEEEEEES
T ss_pred             HHHHHHHHHhc--CCCeEEEEECCHH-HHhhCceEEEEEEe
Confidence            35677777773  3789999999964 56889987  7776

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=94.86  E-value=0.00029  Score=54.20  Aligned_cols=44  Identities=11%  Similarity=0.048  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHh-hcCc-----EEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687           5 HLTLQVIKRFIL-HAKK-----TGFVVEHDFIMATYLSDRVIVFE-GSPSIST   50 (107)
Q Consensus         5 ~~i~~ll~~l~~-~~~~-----tvi~vTHDl~~a~~~~driivl~-g~~~~~g   50 (107)
                      .++.++++++.+ +.|.     ||+++|||++  ..+||+++++. |+++..+
T Consensus       198 ~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~  248 (347)
T 2obl_A          198 SSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTR  248 (347)
T ss_dssp             HHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCH
T ss_pred             HHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeC
Confidence            456677777754 4577     9999999999  78999999998 7776654

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=94.66  E-value=0.049  Score=42.56  Aligned_cols=39  Identities=13%  Similarity=0.128  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCH-------------------HHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDF-------------------IMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl-------------------~~a~~~~driivl~   43 (107)
                      .++++.|++++++.|+|||+|+|..                   .....++|.+++|.
T Consensus       304 ~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~  361 (400)
T 3lda_A          304 AKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFK  361 (400)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEE
Confidence            5788999999988899999999992                   23477889999998

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=94.23  E-value=0.057  Score=41.80  Aligned_cols=36  Identities=17%  Similarity=-0.004  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      .++++|+++.. .+.++|++||+... ...||+++++.
T Consensus       375 ~l~~~l~~~~~-~~~~~ii~th~~~~-~~~~d~~~~~~  410 (430)
T 1w1w_A          375 RIAAYIRRHRN-PDLQFIVISLKNTM-FEKSDALVGVY  410 (430)
T ss_dssp             HHHHHHHHHCB-TTBEEEEECSCHHH-HTTCSEEEEEE
T ss_pred             HHHHHHHHHhc-CCCEEEEEECCHHH-HHhCCEEEEEE
Confidence            46667776643 37899999999765 57899999997

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=94.12  E-value=0.049  Score=41.48  Aligned_cols=35  Identities=9%  Similarity=0.143  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      .+.++|+++.  .+.+||+||||.+ +..+||++++|+
T Consensus       325 ~l~~~l~~~~--~~~~vi~~th~~~-~~~~~d~~~~l~  359 (371)
T 3auy_A          325 KLAEIFRKVK--SIPQMIIITHHRE-LEDVADVIINVK  359 (371)
T ss_dssp             HHHHHHHHCC--SCSEEEEEESCGG-GGGGCSEEEEEE
T ss_pred             HHHHHHHHhc--cCCeEEEEEChHH-HHhhCCEEEEEE
Confidence            4566666653  2468999999987 578999999998

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=94.09  E-value=0.084  Score=36.67  Aligned_cols=39  Identities=15%  Similarity=0.121  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHH--------HHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIM--------ATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~--------a~~~~driivl~   43 (107)
                      .+.+..+.+++++.|.|+++++|....        ...+||.++.|.
T Consensus       149 ~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~  195 (247)
T 2dr3_A          149 RSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLD  195 (247)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEE
Confidence            345566666767779999999998876        468899999997

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=93.95  E-value=0.0075  Score=45.77  Aligned_cols=51  Identities=8%  Similarity=-0.016  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ++.++|+.+.. .+.|+++++|+++ +...|||+++|. |++...+  .+++.+.+
T Consensus       253 e~~~~l~~~~~-g~~tvi~t~H~~~-~~~~~dri~~l~~g~~~~~~--~~~~~i~~  304 (330)
T 2pt7_A          253 EAYDFYNVLCS-GHKGTLTTLHAGS-SEEAFIRLANMSSSNSAARN--IKFESLIE  304 (330)
T ss_dssp             HHHHHHHHHHT-TCCCEEEEEECSS-HHHHHHHHHHHHHTSGGGTT--SCHHHHHH
T ss_pred             HHHHHHHHHhc-CCCEEEEEEcccH-HHHHhhhheehhcCCcccCC--CCHHHHHH
Confidence            46677877753 2458999999999 889999999998 7543222  44444444

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=93.76  E-value=0.1  Score=36.17  Aligned_cols=36  Identities=17%  Similarity=0.111  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      ..+.++|+++..  +.++|+|||+... ..+||+++.+.
T Consensus       105 ~~~~~~l~~~~~--~~~~ivith~~~~-~~~ad~i~~v~  140 (173)
T 3kta_B          105 KRVADLIKESSK--ESQFIVITLRDVM-MANADKIIGVS  140 (173)
T ss_dssp             HHHHHHHHHHTT--TSEEEEECSCHHH-HTTCSEEEEEE
T ss_pred             HHHHHHHHHhcc--CCEEEEEEecHHH-HHhCCEEEEEE
Confidence            356777777753  4689999999765 57899999876

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=93.67  E-value=0.027  Score=43.51  Aligned_cols=42  Identities=5%  Similarity=-0.134  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNL   58 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L   58 (107)
                      .++++|+++    +.|+|++||+ +.   +||++++|+ |++...   ++|+++
T Consensus       312 ~l~~~l~~~----~qt~i~~th~-~~---~~~~i~~l~~G~i~~~---g~~~~~  354 (359)
T 2o5v_A          312 YLLDLAASV----PQAIVTGTEL-AP---GAALTLRAQAGRFTPV---ADEEMQ  354 (359)
T ss_dssp             HHHHHHHHS----SEEEEEESSC-CT---TCSEEEEEETTEEEEC---CCTTTS
T ss_pred             HHHHHHHhc----CcEEEEEEec-cc---cCCEEEEEECCEEEec---CCHHHH
Confidence            344555444    3799999994 44   999999999 776655   466654

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=93.48  E-value=0.00091  Score=52.98  Aligned_cols=43  Identities=14%  Similarity=0.007  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHh---hcCc-----EEEEEeCCHHHHHhhcCEEEEec-CCCcce
Q psy1687           5 HLTLQVIKRFIL---HAKK-----TGFVVEHDFIMATYLSDRVIVFE-GSPSIS   49 (107)
Q Consensus         5 ~~i~~ll~~l~~---~~~~-----tvi~vTHDl~~a~~~~driivl~-g~~~~~   49 (107)
                      .++.+++.++++   +.|+     ||+++|||++  ..+||++++|. |+++..
T Consensus       285 ~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~  336 (438)
T 2dpy_A          285 AKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVLS  336 (438)
T ss_dssp             HHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEEC
T ss_pred             HHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEEe
Confidence            456777877765   3374     9999999997  56777777776 554443

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=93.22  E-value=0.14  Score=38.26  Aligned_cols=53  Identities=17%  Similarity=0.175  Sum_probs=39.4

Q ss_pred             HHHHHHHHhhcCcEEEEEeC---------CHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           8 LQVIKRFILHAKKTGFVVEH---------DFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         8 ~~ll~~l~~~~~~tvi~vTH---------Dl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ...+++++++.|.|+|++||         .++.+..+++.|.++. |+....-+..+|+.+.+
T Consensus       236 ~~~~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~~dl~~f~~~~~~~  298 (302)
T 3b9q_A          236 LPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVN  298 (302)
T ss_dssp             HHHHHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCChhhcccCCHHHHHH
Confidence            34556777667999999999         8889999999999998 76543334555655543

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=93.06  E-value=0.09  Score=41.12  Aligned_cols=40  Identities=10%  Similarity=0.016  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHhhcCcEEEEEeC---------C--HH--------HHHhhcCEEEEec
Q psy1687           4 LHLTLQVIKRFILHAKKTGFVVEH---------D--FI--------MATYLSDRVIVFE   43 (107)
Q Consensus         4 ~~~i~~ll~~l~~~~~~tvi~vTH---------D--l~--------~a~~~~driivl~   43 (107)
                      +.++++.|++++++.|.+||+++|         |  +.        .+...||.|++|.
T Consensus       339 i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~  397 (454)
T 2r6a_A          339 VSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLY  397 (454)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEe
Confidence            357888899999889999999999         3  32        5678999999998

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=93.03  E-value=0.025  Score=48.78  Aligned_cols=40  Identities=5%  Similarity=-0.006  Sum_probs=29.5

Q ss_pred             HHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687           8 LQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI   48 (107)
Q Consensus         8 ~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~   48 (107)
                      ..+++.+.++.|.|+|++|||.+++ .+||++..+. |+...
T Consensus       764 ~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~~  804 (934)
T 3thx_A          764 WAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVTA  804 (934)
T ss_dssp             HHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEEE
T ss_pred             HHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEEE
Confidence            4566777655689999999997766 6899876665 55443

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=92.37  E-value=0.011  Score=40.22  Aligned_cols=46  Identities=7%  Similarity=-0.113  Sum_probs=31.1

Q ss_pred             HHHHHHHHhhcCcEEEEEeCC-HHHHHhhcCEEEEecCCCcceeecCCchhH
Q psy1687           8 LQVIKRFILHAKKTGFVVEHD-FIMATYLSDRVIVFEGSPSISTLANAPQNL   58 (107)
Q Consensus         8 ~~ll~~l~~~~~~tvi~vTHD-l~~a~~~~driivl~g~~~~~g~v~tp~~L   58 (107)
                      .+.+..+. +.+.++|.+||. ++.+..+||+|+ -+|++...|   +|+.|
T Consensus       136 ~~~~~~~~-~~~~~ii~tsh~~~~~~e~~~~~i~-~~g~~~~~~---~~~~~  182 (189)
T 2bdt_A          136 VEEFESKG-IDERYFYNTSHLQPTNLNDIVKNLK-TNPRFIFCM---AGDPL  182 (189)
T ss_dssp             HHHHHHTT-CCTTSEEECSSSCGGGHHHHHHHHH-HCGGGSCC---------
T ss_pred             HHHHhhcC-CCccEEEeCCCCChhhHHHHHHHHh-hCCcEEEee---cCCch
Confidence            44555553 346899999999 999999999999 338888774   55544

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=91.99  E-value=0.13  Score=37.26  Aligned_cols=30  Identities=7%  Similarity=-0.041  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHh
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATY   34 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~   34 (107)
                      .++++.|++++++.|.|||+++|+...+..
T Consensus       157 ~~~~~~L~~l~~~~g~tvi~i~H~~~~~~~  186 (279)
T 1nlf_A          157 AQVIGRMEAIAADTGCSIVFLHHASKGAAM  186 (279)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEEEC------
T ss_pred             HHHHHHHHHHHHHcCCEEEEEecCCCcccc
Confidence            567888999987779999999999988754

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=91.78  E-value=0.058  Score=38.27  Aligned_cols=27  Identities=11%  Similarity=-0.014  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHh
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATY   34 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~   34 (107)
                      .+++++|+++ + .|+|+| ||||++++..
T Consensus       137 ~~l~~~l~~l-~-~g~tii-vtHd~~~~~~  163 (208)
T 3b85_A          137 AQMKMFLTRL-G-FGSKMV-VTGDITQVDL  163 (208)
T ss_dssp             HHHHHHHTTB-C-TTCEEE-EEEC------
T ss_pred             HHHHHHHHHh-c-CCCEEE-EECCHHHHhC
Confidence            4677888887 4 489999 9999998754

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=91.23  E-value=0.34  Score=37.34  Aligned_cols=53  Identities=17%  Similarity=0.175  Sum_probs=39.5

Q ss_pred             HHHHHHHHhhcCcEEEEEeC---------CHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           8 LQVIKRFILHAKKTGFVVEH---------DFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         8 ~~ll~~l~~~~~~tvi~vTH---------Dl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      ...+++++++.|.|+|++||         .++.+..++..|.++. |+..-.-+..+|+.+.+
T Consensus       293 ~~~~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~~Dl~~f~~~~~~~  355 (359)
T 2og2_A          293 LPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVN  355 (359)
T ss_dssp             HHHHHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHH
T ss_pred             HHHHHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCChHhccCCCHHHHHH
Confidence            34456777667999999999         6889999999999998 76554435556655543

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=90.66  E-value=0.26  Score=33.80  Aligned_cols=31  Identities=0%  Similarity=-0.007  Sum_probs=23.2

Q ss_pred             HHHHHHHHhhcCcEEEEEe---CCHHHHHhhcCE
Q psy1687           8 LQVIKRFILHAKKTGFVVE---HDFIMATYLSDR   38 (107)
Q Consensus         8 ~~ll~~l~~~~~~tvi~vT---HDl~~a~~~~dr   38 (107)
                      .+.+.++.++.+.|+|++|   ||++++..+|+|
T Consensus       119 ~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r  152 (178)
T 1ye8_A          119 RDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL  152 (178)
T ss_dssp             HHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred             HHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhc
Confidence            3445555455577788888   599999999998

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=90.21  E-value=0.045  Score=42.06  Aligned_cols=36  Identities=19%  Similarity=0.011  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      +..+.+.+++. .|.|+++++|+.+.+ ..|||++.|.
T Consensus       209 e~~~~~~~~~~-~G~~vl~t~H~~~~~-~~~dRli~l~  244 (356)
T 3jvv_A          209 ETIRLALTAAE-TGHLVFGTLHTTSAA-KTIDRVVDVF  244 (356)
T ss_dssp             HHHHHHHHHHH-TTCEEEEEESCSSHH-HHHHHHHHTS
T ss_pred             HHHHHHHHHHh-cCCEEEEEEccChHH-HHHHHHhhhc
Confidence            45666666654 499999999999987 7899999885

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=88.25  E-value=0.38  Score=36.49  Aligned_cols=45  Identities=13%  Similarity=-0.062  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcc
Q psy1687           4 LHLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSI   48 (107)
Q Consensus         4 ~~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~   48 (107)
                      +.+++..|++++++.|.|+|+++|+.......++...... |+...
T Consensus       261 ~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~  306 (349)
T 1pzn_A          261 LAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILA  306 (349)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCC
T ss_pred             HHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEe
Confidence            4567777888888789999999999876544333344444 44433

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=87.93  E-value=0.21  Score=43.02  Aligned_cols=32  Identities=19%  Similarity=0.167  Sum_probs=23.7

Q ss_pred             HHH-HHHHHHHhhcCcEEEEEeCCHHHHHhhcCE
Q psy1687           6 LTL-QVIKRFILHAKKTGFVVEHDFIMATYLSDR   38 (107)
Q Consensus         6 ~i~-~ll~~l~~~~~~tvi~vTHDl~~a~~~~dr   38 (107)
                      .+. .+++.++++.|.|+|++|||++++ .+||+
T Consensus       772 ~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~~  804 (918)
T 3thx_B          772 AIAYATLEYFIRDVKSLTLFVTHYPPVC-ELEKN  804 (918)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHH
T ss_pred             HHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHhh
Confidence            344 567777665699999999998876 45554

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=87.62  E-value=0.17  Score=42.89  Aligned_cols=35  Identities=11%  Similarity=0.145  Sum_probs=26.8

Q ss_pred             HHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           8 LQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         8 ~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      ..+++.+.++.|.++|++|||.+++ .+||++..+.
T Consensus       709 ~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~  743 (800)
T 1wb9_A          709 WACAENLANKIKALTLFATHYFELT-QLPEKMEGVA  743 (800)
T ss_dssp             HHHHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEE
T ss_pred             HHHHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceE
Confidence            5677888664589999999999886 4888764443

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=82.83  E-value=3.7  Score=30.49  Aligned_cols=25  Identities=24%  Similarity=0.089  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFI   30 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~   30 (107)
                      ++++.+++++++.|.|+|++||+-.
T Consensus       235 ~~~~~~~~~~~~~~~t~iivTh~d~  259 (304)
T 1rj9_A          235 NGLEQAKKFHEAVGLTGVIVTKLDG  259 (304)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred             HHHHHHHHHHHHcCCcEEEEECCcc
Confidence            5678888888777999999999843

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=82.00  E-value=0.22  Score=36.32  Aligned_cols=34  Identities=12%  Similarity=0.021  Sum_probs=25.7

Q ss_pred             HHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           7 TLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         7 i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      +..+++. + +.|.+|+++||+.+ +...|||+++|.
T Consensus       113 ~~~~l~~-~-~~g~~vl~t~H~~~-~~~~~dri~~l~  146 (261)
T 2eyu_A          113 VETALRA-A-ETGHLVFGTLHTNT-AIDTIHRIVDIF  146 (261)
T ss_dssp             HHHHHHH-H-HTTCEEEEEECCSS-HHHHHHHHHHTS
T ss_pred             HHHHHHH-H-ccCCEEEEEeCcch-HHHHHHHHhhhc
Confidence            3344543 3 35899999999988 678999998886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	107
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.22
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.21
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.21
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.2
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.18
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.18
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.16
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.11
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.08
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.05
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.04
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.01
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	98.95
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	98.88
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	98.77
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	98.71
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	98.63
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	98.49
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.3
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.28
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.52
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.51
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	87.31

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.22  E-value=5.9e-12  Score=91.98  Aligned_cols=53  Identities=25%  Similarity=0.273  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++.|+|+|+||||+++|..+|||+++|+ |+++..   |+|+++++
T Consensus       173 ~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~---G~~~el~~  226 (239)
T d1v43a3         173 VAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQI---GSPTEVYL  226 (239)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence            578999999988889999999999999999999999999 888887   59999875

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.21  E-value=7.6e-12  Score=91.57  Aligned_cols=53  Identities=25%  Similarity=0.232  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++.|+|+|+||||+++|..+|||+++|+ |+++..   |+|+++++
T Consensus       177 ~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~---g~~~el~~  230 (242)
T d1oxxk2         177 DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQV---GKPEDLYD  230 (242)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred             HHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence            578999999988889999999999999999999999999 888877   59999875

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=8.9e-12  Score=90.63  Aligned_cols=53  Identities=25%  Similarity=0.318  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++.|+|+|+||||+++|..+|||+++|+ |+++..   |+|+++++
T Consensus       167 ~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~---G~~~el~~  220 (232)
T d2awna2         167 VQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV---GKPLELYH  220 (232)
T ss_dssp             HHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---eCHHHHHh
Confidence            478999999998889999999999999999999999999 888877   59998875

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.20  E-value=8e-12  Score=91.29  Aligned_cols=53  Identities=21%  Similarity=0.283  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++.|+|+|+||||+++|..+|||+++|+ |+++..   |+|+++++
T Consensus       176 ~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~---G~~~el~~  229 (240)
T d1g2912         176 VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV---GSPDEVYD  229 (240)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred             HHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence            578999999988889999999999999999999999999 888877   59999876

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.18  E-value=1.4e-11  Score=89.45  Aligned_cols=53  Identities=19%  Similarity=0.260  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++.++|++++++.|+|+|+||||+++|..+|||+++|+ |+++..   |+|+++++
T Consensus       164 ~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~---g~~~el~~  217 (229)
T d3d31a2         164 ENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV---GKPEEIFE  217 (229)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEE---ECHHHHHS
T ss_pred             HHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence            578999999988889999999999999999999999999 988888   58888865

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=6.6e-12  Score=91.75  Aligned_cols=53  Identities=15%  Similarity=0.217  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++.|+|+|+||||+++|..+|||+++|+ |+++..   |+|+++++
T Consensus       177 ~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~---G~~~ei~~  230 (240)
T d3dhwc1         177 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ---DTVSEVFS  230 (240)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEE---EETTTTTC
T ss_pred             hHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE---CCHHHHHh
Confidence            578999999998889999999999999999999999999 888877   58888754

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.16  E-value=1.6e-11  Score=90.28  Aligned_cols=52  Identities=23%  Similarity=0.355  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++ |+|+|+||||+++|..+||||++|+ |+++..   |+|+++++
T Consensus       186 ~~i~~ll~~l~~~-g~til~vtHdl~~~~~~adri~vm~~G~iv~~---g~~~ev~~  238 (258)
T d1b0ua_         186 GEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE---GDPEQVFG  238 (258)
T ss_dssp             HHHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred             HHHHHhhhhhccc-CCceEEEeCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHh
Confidence            5789999999865 9999999999999999999999999 888877   58988876

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.11  E-value=3.6e-11  Score=87.87  Aligned_cols=53  Identities=21%  Similarity=0.225  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++.|+|+|+||||+++|..+|||+++|+ |++++.   |+|+++.+
T Consensus       163 ~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~---G~~~el~~  216 (240)
T d2onka1         163 GVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEK---GKLKELFS  216 (240)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE---ECHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEE---ecHHHHhc
Confidence            478999999988889999999999999999999999999 888887   58888865

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.08  E-value=6e-11  Score=86.21  Aligned_cols=52  Identities=21%  Similarity=0.254  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|++++++ |+|||+||||++++..+|||+++|+ |++++.|   +|+++.+
T Consensus       176 ~~i~~~i~~l~~~-g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g---~~~el~~  228 (240)
T d1ji0a_         176 SEVFEVIQKINQE-GTTILLVEQNALGALKVAHYGYVLETGQIVLEG---KASELLD  228 (240)
T ss_dssp             HHHHHHHHHHHHT-TCCEEEEESCHHHHHHHCSEEEEEETTEEEEEE---EHHHHHT
T ss_pred             HHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc---CHHHHhc
Confidence            5789999999776 9999999999999999999999999 9998885   7777764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.05  E-value=7.1e-11  Score=85.80  Aligned_cols=53  Identities=17%  Similarity=0.275  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      .++.++|++++++ |+|||++|||++++..+|||+++|+ |++++.   |+|+++.+.
T Consensus       170 ~~i~~~i~~~~~~-g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~---g~~~el~~~  223 (238)
T d1vpla_         170 REVRKILKQASQE-GLTILVSSHNMLEVEFLCDRIALIHNGTIVET---GTVEELKER  223 (238)
T ss_dssp             HHHHHHHHHHHHT-TCEEEEEECCHHHHTTTCSEEEEEETTEEEEE---EEHHHHHHH
T ss_pred             HHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE---cCHHHHHhc
Confidence            5788999998765 9999999999999999999999999 888888   599998764

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=5e-11  Score=85.99  Aligned_cols=51  Identities=12%  Similarity=0.117  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLL   59 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~   59 (107)
                      ..+.++|++++++ |+|||+||||++++..+|||+++|+ |++++.|   +|++++
T Consensus       169 ~~i~~~i~~l~~~-g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G---~~~ev~  220 (231)
T d1l7vc_         169 SALDKILSALCQQ-GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASG---RREEVL  220 (231)
T ss_dssp             HHHHHHHHHHHHT-TCEEEECCCCHHHHHHHCSBCCBEETTEECCCS---BHHHHS
T ss_pred             HHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEC---CHHHHh
Confidence            4688999999765 9999999999999999999999999 9888885   555554

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.01  E-value=7.1e-11  Score=86.33  Aligned_cols=52  Identities=13%  Similarity=0.134  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .+++++|+++++ .|+|||+||||++++..+||||++|+ |++++.   |+|+++.+
T Consensus       187 ~~i~~~i~~l~~-~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~---g~~~e~~~  239 (254)
T d1g6ha_         187 HDIFNHVLELKA-KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE---GRGEEEIK  239 (254)
T ss_dssp             HHHHHHHHHHHH-TTCEEEEECSCCSTTGGGCSEEEEEETTEEEEE---EESHHHHH
T ss_pred             HHHHHHHHHHHH-CCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEE---ecHHHHhh
Confidence            578999999965 49999999999999999999999999 998888   48887655

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.95  E-value=4.1e-10  Score=81.56  Aligned_cols=45  Identities=27%  Similarity=0.381  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCccee
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSIST   50 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g   50 (107)
                      .+++++|++++++.|+|+|+||||+++| .+|||+++|+ |+++.+|
T Consensus       182 ~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv~~g  227 (230)
T d1l2ta_         182 EKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREE  227 (230)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEECCEEEEec
Confidence            5789999999988899999999999988 6999999999 8877765

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=6.4e-10  Score=81.12  Aligned_cols=53  Identities=11%  Similarity=0.179  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      .+++++|+++.++.|+|+|+||||++.+ ..||||++|+ |+++..   |+|++|.+.
T Consensus       188 ~~i~~~l~~l~~~~~~Tvi~itH~l~~~-~~aDrI~vl~~G~iv~~---Gt~~eLl~~  241 (251)
T d1jj7a_         188 LQVEQLLYESPERYSRSVLLITQHLSLV-EQADHILFLEGGAIREG---GTHQQLMEK  241 (251)
T ss_dssp             HHHHHHHHTCGGGGGCEEEEECSCHHHH-HTCSEEEEEETTEEEEE---ECHHHHHHH
T ss_pred             HHHHHHHHHHhhhcCCEEEEEeCCHHHH-HhCCEEEEEECCEEEEE---CCHHHHHhC
Confidence            4678889888877799999999999977 5699999999 888877   599999874

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=98.77  E-value=5.9e-09  Score=75.53  Aligned_cols=50  Identities=16%  Similarity=0.307  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           6 LTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         6 ~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      ++++.|+++.  .|+|+|+||||++.+. .||||++|+ |+++..   |+|++|.+.
T Consensus       177 ~i~~~l~~l~--~~~Tvi~itH~l~~~~-~~D~i~vl~~G~iv~~---G~~~eLl~~  227 (242)
T d1mv5a_         177 MVQKALDSLM--KGRTTLVIAHRLSTIV-DADKIYFIEKGQITGS---GKHNELVAT  227 (242)
T ss_dssp             HHHHHHHHHH--TTSEEEEECCSHHHHH-HCSEEEEEETTEECCC---SCHHHHHHH
T ss_pred             HHHHHHHHHc--CCCEEEEEECCHHHHH-hCCEEEEEECCEEEEE---CCHHHHHhC
Confidence            5788888886  3899999999999885 599999999 888877   699999874

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.71  E-value=4.2e-09  Score=76.75  Aligned_cols=51  Identities=18%  Similarity=0.259  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      ..+++.|+++.+  ++|+|+||||++.+ ..||||++|+ |+++..   |+|++|.+.
T Consensus       189 ~~i~~~l~~l~~--~~Tvi~itH~l~~~-~~~D~v~vl~~G~Iv~~---G~~~eLl~~  240 (253)
T d3b60a1         189 RAIQAALDELQK--NRTSLVIAHRLSTI-EQADEIVVVEDGIIVER---GTHSELLAQ  240 (253)
T ss_dssp             HHHHHHHHHHHT--TSEEEEECSCGGGT-TTCSEEEEEETTEEEEE---ECHHHHHHH
T ss_pred             HHHHHHHHHhcc--CCEEEEEECCHHHH-HhCCEEEEEECCEEEEE---CCHHHHHhC
Confidence            467888888853  89999999999987 5799999999 888877   599999874

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=1.1e-08  Score=74.12  Aligned_cols=50  Identities=22%  Similarity=0.389  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLN   60 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~   60 (107)
                      .++++.|+++.+  ++|+|+||||++.+ ..||||++|+ |+++..   |++++|.+
T Consensus       176 ~~i~~~l~~l~~--~~Tvi~itH~l~~~-~~~D~i~vl~~G~Iv~~---G~~~ell~  226 (241)
T d2pmka1         176 HVIMRNMHKICK--GRTVIIIAHRLSTV-KNADRIIVMEKGKIVEQ---GKHKELLS  226 (241)
T ss_dssp             HHHHHHHHHHHT--TSEEEEECSSGGGG-TTSSEEEEEETTEEEEE---ECHHHHHH
T ss_pred             HHHHHHHHHHhC--CCEEEEEECCHHHH-HhCCEEEEEECCEEEEE---CCHHHHHh
Confidence            467888888853  79999999999987 6799999999 888877   59999875

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.49  E-value=3.8e-08  Score=71.81  Aligned_cols=51  Identities=16%  Similarity=0.322  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      ..+++.|+++.  .++|+|+||||++.+ ..||||++|+ |+++..   |++++|.+.
T Consensus       191 ~~i~~~l~~l~--~~~TvI~itH~~~~~-~~~D~ii~l~~G~iv~~---G~~~eLl~~  242 (255)
T d2hyda1         191 SIIQEALDVLS--KDRTTLIVAHRLSTI-THADKIVVIENGHIVET---GTHRELIAK  242 (255)
T ss_dssp             HHHHHHHHHHT--TTSEEEEECSSGGGT-TTCSEEEEEETTEEEEE---ECHHHHHHT
T ss_pred             HHHHHHHHHHh--cCCEEEEEeCCHHHH-HhCCEEEEEECCEEEEE---CCHHHHHhC
Confidence            36778888775  378999999999977 6799999999 877777   699998874

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=1e-07  Score=70.17  Aligned_cols=40  Identities=20%  Similarity=0.254  Sum_probs=34.8

Q ss_pred             cCcEEEEEeCCHHHHHhhcCEEEEec-CCCcceeecCCchhHHHH
Q psy1687          18 AKKTGFVVEHDFIMATYLSDRVIVFE-GSPSISTLANAPQNLLNG   61 (107)
Q Consensus        18 ~~~tvi~vTHDl~~a~~~~driivl~-g~~~~~g~v~tp~~L~~~   61 (107)
                      .++|+|+|||+++.+ .+||||++|+ |+++..   |+|++|.+.
T Consensus       207 ~~~tvi~itH~~~~l-~~aDrI~vl~~G~i~~~---Gt~~eL~~~  247 (281)
T d1r0wa_         207 ANKTRILVTSKMEHL-RKADKILILHQGSSYFY---GTFSELQSL  247 (281)
T ss_dssp             TTSEEEEECSCHHHH-HTCSEEEEEETTEEEEE---ECHHHHHHH
T ss_pred             CCCEEEEEechHHHH-HhCCEEEEEECCEEEEE---CCHHHHhcc
Confidence            478999999999875 6899999999 888877   599999874

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.52  E-value=0.0051  Score=42.04  Aligned_cols=35  Identities=11%  Similarity=0.055  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEec
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVFE   43 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl~   43 (107)
                      .++++.|+++.++.++++|.++||++    +||++.+|+
T Consensus       162 ~~i~~~l~~~~~~~~~~ii~~~~~l~----~~D~~~~l~  196 (200)
T d1sgwa_         162 HKVLKSILEILKEKGIVIISSREELS----YCDVNENLH  196 (200)
T ss_dssp             HHHHHHHHHHHHHHSEEEEEESSCCT----TSSEEEEGG
T ss_pred             HHHHHHHHHHHhCCCEEEEEEechhh----hcchhhhee
Confidence            57899999998887888888888864    799999985

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.31  E-value=0.45  Score=33.46  Aligned_cols=36  Identities=17%  Similarity=0.031  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhcCEEEEe
Q psy1687           5 HLTLQVIKRFILHAKKTGFVVEHDFIMATYLSDRVIVF   42 (107)
Q Consensus         5 ~~i~~ll~~l~~~~~~tvi~vTHDl~~a~~~~driivl   42 (107)
                      ..+.++|+++.. .+.-+|++||+...+ ..||+++.+
T Consensus       373 ~~~~~~l~~~~~-~~~Q~I~iTH~~~~~-~~ad~~~~V  408 (427)
T d1w1wa_         373 QRIAAYIRRHRN-PDLQFIVISLKNTMF-EKSDALVGV  408 (427)
T ss_dssp             HHHHHHHHHHCB-TTBEEEEECSCHHHH-TTCSEEEEE
T ss_pred             HHHHHHHHHHhC-CCCEEEEEeCCHHHH-HhcccEEEE
Confidence            356677777642 355799999999977 668998765