Psyllid ID: psy16880

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80----
Protein Sequence
DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCDR
Secondary Structure (PSIPRED)
cccEEEEccccccccEEEEEEcccccEEEEEcccccEEEEEcccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEc
Secondary Structure Prediction (SSPRO)
cccHHHHHcccccccEEEEEEcccccEEEEEccccEEEEEEcccccccccEEEEEEcccccEEEEEccccEEEEEEcccccccc
Coil and Loop (DISEMBL)
dgsiihtfvhsnnsavrSISFCskqhtlisggddgsiCMWNLNSKLCDSAVRSIsfcskqrtlisggddgsicmwnlnsklcdr
Flexible Loop (DISEMBL)
dgsiihtfvhsnnsaVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSISFCSKQRtlisggddgsicmwnlnsklcdr
Low Complexity Region (SEG)
DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCDR
Disordered region (IsUnstruct)
***IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSISFCSKQRTLISGGDDGSICMWNLNS*****
Disordered Region (DISOPRED)
DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCDR
Disordered Region (DISEMBL)
DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCDR
Disordered Region (DISPRO)
*GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSISFCSKQRTLISGGDDGSICMWNLNSK*C**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCDR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	84	2.2.26 [Sep-21-2011]
Q55FR9	1221	Coatomer subunit alpha OS	yes	N/A	0.857	0.058	0.316	6e-06
Q9SJT9	1218	Coatomer subunit alpha-2	no	N/A	0.952	0.065	0.295	8e-06
Q94A40	1216	Coatomer subunit alpha-1	no	N/A	0.952	0.065	0.295	1e-05
Q0J3D9	1218	Coatomer subunit alpha-3	yes	N/A	0.952	0.065	0.284	1e-05
Q9AUR8	1218	Coatomer subunit alpha-1	yes	N/A	0.952	0.065	0.284	1e-05
Q9AUR7	1218	Coatomer subunit alpha-2	yes	N/A	0.952	0.065	0.284	2e-05
A0AUS0	487	WD repeat, SAM and U-box	yes	N/A	0.916	0.158	0.309	3e-05
Q9EPN1	2936	Neurobeachin OS=Mus muscu	no	N/A	0.785	0.022	0.315	4e-05
Q8NFP9	2946	Neurobeachin OS=Homo sapi	no	N/A	0.785	0.022	0.315	4e-05
F6ZT52	470	POC1 centriolar protein h	no	N/A	0.904	0.161	0.301	4e-05

>sp|Q55FR9|COPA_DICDI Coatomer subunit alpha OS=Dictyostelium discoideum GN=copa PE=3 SV=1

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 7/79 (8%)

Query: 11  SNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTL 63
            +   VR I+F   Q   +SGGDD  I +WN   + C          +RS+ F  +   +
Sbjct: 49  EHEGPVRGINFHMTQPLFVSGGDDYKIKVWNYKQRRCLFTLKGHKDYIRSVEFHREAPWI 108

Query: 64  ISGGDDGSICMWNLNSKLC 82
           +S  DD  I +WN  S+ C
Sbjct: 109 VSSSDDMVIRIWNWQSRTC 127

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
Dictyostelium discoideum (taxid: 44689)

>sp|Q9SJT9|COPA2_ARATH Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 8/88 (9%)

Query: 2   GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCD-------SAVRSI 54
           G++I  F   +   VR + F + Q   +SGGDD  I +WN  +  C          +R++
Sbjct: 41  GTLIDRF-DEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIRTV 99

Query: 55  SFCSKQRTLISGGDDGSICMWNLNSKLC 82
            F  +   ++S  DD +I +WN  S+ C
Sbjct: 100 QFHHENPWIVSASDDQTIRIWNWQSRTC 127

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94A40|COPA1_ARATH Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1 SV=2

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 8/88 (9%)

Query: 2   GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCD-------SAVRSI 54
           G++I  F   +   VR + F + Q   +SGGDD  I +WN  +  C          +R++
Sbjct: 41  GTLIDRF-DEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKNHRCLFTLLGHLDYIRTV 99

Query: 55  SFCSKQRTLISGGDDGSICMWNLNSKLC 82
            F  +   ++S  DD +I +WN  S+ C
Sbjct: 100 QFHHEYPWIVSASDDQTIRIWNWQSRTC 127

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J3D9|COPA3_ORYSJ Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica GN=Os09g0127800 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 8/88 (9%)

Query: 2   GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCD-------SAVRSI 54
           G+++  F   ++  VR + F + Q   +SGGDD  I +WN  +  C          +R++
Sbjct: 41  GTLLDRF-DEHDGPVRGVHFHATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTV 99

Query: 55  SFCSKQRTLISGGDDGSICMWNLNSKLC 82
            F  +   ++S  DD +I +WN  S+ C
Sbjct: 100 QFHHEYPWIVSASDDQTIRIWNWQSRTC 127

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9AUR8|COPA1_ORYSJ Coatomer subunit alpha-1 OS=Oryza sativa subsp. japonica GN=Os03g0711400 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 8/88 (9%)

Query: 2   GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCD-------SAVRSI 54
           G+++  F   ++  VR + F + Q   +SGGDD  I +WN  +  C          +R++
Sbjct: 41  GTLLDRF-DEHDGPVRGVHFHATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTV 99

Query: 55  SFCSKQRTLISGGDDGSICMWNLNSKLC 82
            F  +   ++S  DD +I +WN  S+ C
Sbjct: 100 QFHHEYPWIVSASDDQTIRIWNWQSRTC 127

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9AUR7|COPA2_ORYSJ Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica GN=Os03g0711500 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 8/88 (9%)

Query: 2   GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCD-------SAVRSI 54
           G+++  F   ++  VR + F + Q   +SGGDD  I +WN  +  C          +R++
Sbjct: 41  GTLLDRF-DEHDGPVRGVHFHATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTV 99

Query: 55  SFCSKQRTLISGGDDGSICMWNLNSKLC 82
            F  +   ++S  DD +I +WN  S+ C
Sbjct: 100 QFHHECPWIVSASDDQTIRIWNWQSRTC 127

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A0AUS0|WSDU1_DANRE WD repeat, SAM and U-box domain-containing protein 1 OS=Danio rerio GN=wdsub1 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 2   GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSI 54
           G I     H   S VR  +F      L+SGG DGSI +W+  S+         D+++ + 
Sbjct: 86  GEIEAVLEHPGRSPVRVCAFSPDSSHLVSGGSDGSIALWDFTSRTLRRTGVVNDTSIVAC 145

Query: 55  SFCSKQRTLISGGDDGSICMWNLN 78
           SF    +  I+G   G + +W+LN
Sbjct: 146 SFTPCGQMFITGSTYGDLRLWDLN 169

Danio rerio (taxid: 7955)

>sp|Q9EPN1|NBEA_MOUSE Neurobeachin OS=Mus musculus GN=Nbea PE=1 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 7/73 (9%)

Query: 13   NSAVRSISFCSKQHTLISGGDDGSICMWNLNS-------KLCDSAVRSISFCSKQRTLIS 65
            N + R+I   S    L++GGD+G + +W             CD+ +R++     QRTLI+
Sbjct: 2852 NDSTRAILLSSDGQNLVTGGDNGVVEVWQACDFKQLYIYPGCDAGIRAMDLSHDQRTLIT 2911

Query: 66   GGDDGSICMWNLN 78
            G   GSI  +N++
Sbjct: 2912 GMASGSIVAFNID 2924

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins. May have a role in membrane trafficking.

Mus musculus (taxid: 10090)

>sp|Q8NFP9|NBEA_HUMAN Neurobeachin OS=Homo sapiens GN=NBEA PE=1 SV=3

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 7/73 (9%)

Query: 13   NSAVRSISFCSKQHTLISGGDDGSICMWNLNS-------KLCDSAVRSISFCSKQRTLIS 65
            N + R+I   S    L++GGD+G + +W             CD+ +R++     QRTLI+
Sbjct: 2862 NDSTRAILLSSDGQNLVTGGDNGVVEVWQACDFKQLYIYPGCDAGIRAMDLSHDQRTLIT 2921

Query: 66   GGDDGSICMWNLN 78
            G   GSI  +N++
Sbjct: 2922 GMASGSIVAFNID 2934

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins.

Homo sapiens (taxid: 9606)

>sp|F6ZT52|POC1B_XENTR POC1 centriolar protein homolog B OS=Xenopus tropicalis GN=poc1b PE=2 SV=1

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 7/83 (8%)

Query: 7   TFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSK-----LCDSA--VRSISFCSK 59
           + + ++ + VR ++F S  HT I+  DD SI  WNL+ +     L +    VR   F   
Sbjct: 96  SVLKAHTAVVRCVNFSSDGHTFITASDDKSIKAWNLHRQRFLYSLTEHTNWVRCARFSPD 155

Query: 60  QRTLISGGDDGSICMWNLNSKLC 82
            R + S  DD ++ +W++ ++LC
Sbjct: 156 GRLIASCSDDKTVRIWDITNRLC 178

Involved in early steps of centriole duplication, as well as in the later steps of centriole length control. Required for ciliogenesis.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
428299395	1139	YD repeat protein [Calothrix sp. PCC 630	0.976	0.071	0.340	6e-08
425455607	1108	Genome sequencing data, contig C309 [Mic	0.916	0.069	0.388	2e-07
434394192	1232	WD-40 repeat-containing protein [Gloeoca	0.976	0.066	0.382	3e-07
425465666	816	Genome sequencing data, contig C309 (fra	0.761	0.078	0.422	3e-07
37521813	1721	hypothetical protein glr2244 [Gloeobacte	0.940	0.045	0.341	3e-07
307155260	1449	WD40 repeat-containing protein [Cyanothe	0.952	0.055	0.352	4e-07
354568144	1376	(Myosin heavy-chain) kinase [Fischerella	0.797	0.048	0.324	4e-07
126658553	1523	Peptidase C14, caspase catalytic subunit	0.892	0.049	0.409	6e-07
166366485	1230	WD repeat-containing protein [Microcysti	0.928	0.063	0.360	7e-07
183983394	1600	putative regulatory protein [Mycobacteri	0.809	0.042	0.416	8e-07

>gi|428299395|ref|YP_007137701.1| YD repeat protein [Calothrix sp. PCC 6303] gi|428235939|gb|AFZ01729.1| YD repeat protein [Calothrix sp. PCC 6303]

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 6/88 (6%)

Query: 1   DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDS------AVRSI 54
           +G+++    H+NN +V SISF      + SG +D +I +WNLN  L  +      +VR++
Sbjct: 605 NGTLVKIIKHTNNGSVSSISFSPDGKIIASGSNDNTIKLWNLNGTLIKTLIGHKASVRTV 664

Query: 55  SFCSKQRTLISGGDDGSICMWNLNSKLC 82
           +F    + + SG DD +I +WNL+  L 
Sbjct: 665 NFSPNGKIIASGSDDTTIKLWNLDGTLI 692

Source: Calothrix sp. PCC 6303

Species: Calothrix parietina

Genus: Calothrix

Family: Rivulariaceae

Order: Nostocales

Phylum: Cyanobacteria

Superkingdom: Bacteria

>gi|425455607|ref|ZP_18835327.1| Genome sequencing data, contig C309 [Microcystis aeruginosa PCC 9807] gi|389803520|emb|CCI17593.1| Genome sequencing data, contig C309 [Microcystis aeruginosa PCC 9807]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 8/85 (9%)

Query: 2    GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKL-------CDSAVRSI 54
            G  IHTF + ++  VRS++F     TL+SG DD +I +WN+ +          DS VRS+
Sbjct: 980  GEEIHTF-YGHDGPVRSVNFSPNGKTLVSGSDDKTIKLWNVKTGKEIRTLHGHDSRVRSV 1038

Query: 55   SFCSKQRTLISGGDDGSICMWNLNS 79
            +F    +TL+SG  D +I +WN N+
Sbjct: 1039 NFSPDGKTLVSGSVDKTIKLWNGNN 1063

Source: Microcystis aeruginosa PCC 9807

Species: Microcystis aeruginosa

Genus: Microcystis

Order: Chroococcales

Phylum: Cyanobacteria

Superkingdom: Bacteria

>gi|434394192|ref|YP_007129139.1| WD-40 repeat-containing protein [Gloeocapsa sp. PCC 7428] gi|428266033|gb|AFZ31979.1| WD-40 repeat-containing protein [Gloeocapsa sp. PCC 7428]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 7/89 (7%)

Query: 2   GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNS----KLCDSA--VRSIS 55
           G ++ +F   + + V S++F  +   L SG +DGSI +WN+ S    +L +SA  VR+I+
Sbjct: 716 GQVLQSF-QGHTNRVESVNFNPQGTILASGSNDGSIRLWNVTSGQAIQLTESAQPVRAIA 774

Query: 56  FCSKQRTLISGGDDGSICMWNLNSKLCDR 84
           F      L SGGDDG++ +W+L S  C R
Sbjct: 775 FSVDGALLASGGDDGNVTLWDLTSGSCLR 803

Source: Gloeocapsa sp. PCC 7428

Species: Gloeocapsa sp. PCC 7428

Genus: Gloeocapsa

Order: Chroococcales

Phylum: Cyanobacteria

Superkingdom: Bacteria

>gi|425465666|ref|ZP_18844973.1| Genome sequencing data, contig C309 (fragment) [Microcystis aeruginosa PCC 9809] gi|389832046|emb|CCI24681.1| Genome sequencing data, contig C309 (fragment) [Microcystis aeruginosa PCC 9809]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 7/71 (9%)

Query: 16  VRSISFCSKQHTLISGGDDGSICMWNLNS-------KLCDSAVRSISFCSKQRTLISGGD 68
           VRS++F S   TL+SG DD +I +WN+ +       K  DSAV S++F S  +TL+SG  
Sbjct: 658 VRSVNFSSDGKTLVSGSDDNTIKLWNVETGQEIRTLKGHDSAVISVNFSSDGKTLVSGSA 717

Query: 69  DGSICMWNLNS 79
           D +I +WN+ +
Sbjct: 718 DNTIKLWNVET 728

Source: Microcystis aeruginosa PCC 9809

Species: Microcystis aeruginosa

Genus: Microcystis

Order: Chroococcales

Phylum: Cyanobacteria

Superkingdom: Bacteria

>gi|37521813|ref|NP_925190.1| hypothetical protein glr2244 [Gloeobacter violaceus PCC 7421] gi|35212812|dbj|BAC90185.1| WD-repeat protein [Gloeobacter violaceus PCC 7421]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 55/85 (64%), Gaps = 6/85 (7%)

Query: 1    DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNS-----KLCDSAVRSIS 55
            DG++I T +  ++++V S+SF     TL++GGDD ++ +W L++     +  ++ VRSI+
Sbjct: 1336 DGTLIRT-LRGHSASVNSLSFGRSDRTLVTGGDDSNLRIWKLSNFNTSFQAFENPVRSIA 1394

Query: 56   FCSKQRTLISGGDDGSICMWNLNSK 80
               +++ LI+GG DG+I +W  N +
Sbjct: 1395 LGPQEQFLIAGGSDGTIKIWGNNGR 1419

Source: Gloeobacter violaceus PCC 7421

Species: Gloeobacter violaceus

Genus: Gloeobacter

Order: Gloeobacterales

Class: Gloeobacteria

Phylum: Cyanobacteria

Superkingdom: Bacteria

>gi|307155260|ref|YP_003890644.1| WD40 repeat-containing protein [Cyanothece sp. PCC 7822] gi|306985488|gb|ADN17369.1| WD40 repeat, subgroup [Cyanothece sp. PCC 7822]

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 8/88 (9%)

Query: 2    GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSI 54
            G  +HT    + S VRS++F     TL SG DD ++ +W+  S  C        S V S+
Sbjct: 1033 GEYLHTLT-GHQSPVRSVAFAPDSQTLASGSDDHTVKLWHYQSGECLHTLTGHQSPVYSV 1091

Query: 55   SFCSKQRTLISGGDDGSICMWNLNSKLC 82
            +F S  +TL SG DD ++ +W+  S  C
Sbjct: 1092 AFASNSQTLASGSDDHTVKLWHYKSGEC 1119

Source: Cyanothece sp. PCC 7822

Species: Cyanothece sp. PCC 7822

Genus: Cyanothece

Order: Chroococcales

Phylum: Cyanobacteria

Superkingdom: Bacteria

>gi|354568144|ref|ZP_08987310.1| (Myosin heavy-chain) kinase [Fischerella sp. JSC-11] gi|353541109|gb|EHC10579.1| (Myosin heavy-chain) kinase [Fischerella sp. JSC-11]

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 7/74 (9%)

Query: 16  VRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGD 68
           VRS++FC     L+SGGDD ++ +W++ +  C       ++ VRS++F    + ++SG D
Sbjct: 924 VRSVAFCPNGQRLVSGGDDNTVRIWDIRTTKCCANLLGHENWVRSVAFSPDGQRIVSGSD 983

Query: 69  DGSICMWNLNSKLC 82
           D ++ +W+L +  C
Sbjct: 984 DNTVRIWDLQTNQC 997

Source: Fischerella sp. JSC-11

Species: Fischerella sp. JSC-11

Genus: Fischerella

Order: Stigonematales

Phylum: Cyanobacteria

Superkingdom: Bacteria

>gi|126658553|ref|ZP_01729700.1| Peptidase C14, caspase catalytic subunit p20 [Cyanothece sp. CCY0110] gi|126620140|gb|EAZ90862.1| Peptidase C14, caspase catalytic subunit p20 [Cyanothece sp. CCY0110]

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 8/83 (9%)

Query: 2    GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLN-SKLCDSA------VRSI 54
            G IIHTF H N S V +I F      L S GDDG+I +W++  ++L ++       VR I
Sbjct: 1218 GEIIHTFNHDNGS-VWNIIFNPDGKILASSGDDGTIKLWDVKRTELLNTLNHHTGLVRRI 1276

Query: 55   SFCSKQRTLISGGDDGSICMWNL 77
            +F  + + L SGGDDG+I +W++
Sbjct: 1277 NFSPEGKILASGGDDGTIKLWDV 1299

Source: Cyanothece sp. CCY0110

Species: Cyanothece sp. CCY0110

Genus: Cyanothece

Order: Chroococcales

Phylum: Cyanobacteria

Superkingdom: Bacteria

>gi|166366485|ref|YP_001658758.1| WD repeat-containing protein [Microcystis aeruginosa NIES-843] gi|166088858|dbj|BAG03566.1| WD-repeat protein [Microcystis aeruginosa NIES-843]

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 8/86 (9%)

Query: 2    GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNS-------KLCDSAVRSI 54
            G  IHTF   ++  VRS++F     TL+SG  D +I +W++         K  D  VRS+
Sbjct: 1053 GEEIHTF-EGHHDRVRSVNFSPNGETLVSGSYDKTIKLWDVEKRQEIHTFKGHDGPVRSV 1111

Query: 55   SFCSKQRTLISGGDDGSICMWNLNSK 80
            +F    +TL+SG DD +I +WN+  +
Sbjct: 1112 NFSPNGKTLVSGSDDKTIKLWNVEKR 1137

Source: Microcystis aeruginosa NIES-843

Species: Microcystis aeruginosa

Genus: Microcystis

Order: Chroococcales

Phylum: Cyanobacteria

Superkingdom: Bacteria

>gi|183983394|ref|YP_001851685.1| putative regulatory protein [Mycobacterium marinum M] gi|183176720|gb|ACC41830.1| conserved hypothetical regulatory protein [Mycobacterium marinum M]

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 4/72 (5%)

Query: 12   NNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----DSAVRSISFCSKQRTLISGG 67
            ++  V SI+F    HTL +G  DG+I +WNLN+ L        VRS  F    +TL SGG
Sbjct: 1213 HHGTVWSIAFGPDGHTLTTGSHDGTIRLWNLNTVLPVRGHTGPVRSAVFSPDVQTLASGG 1272

Query: 68   DDGSICMWNLNS 79
            DD +I +W+L +
Sbjct: 1273 DDATIALWDLTN 1284

Source: Mycobacterium marinum M

Species: Mycobacterium marinum

Genus: Mycobacterium

Family: Mycobacteriaceae

Order: Actinomycetales

Class: Actinobacteria

Phylum: Actinobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
TAIR|locus:2135393	910	AT4G04940 "AT4G04940" [Arabido	0.880	0.081	0.357	5.2e-06
TAIR|locus:2082891	438	RID3 "AT3G49180" [Arabidopsis	0.357	0.068	0.366	5.5e-06
TAIR|locus:2050064	1218	AT2G21390 [Arabidopsis thalian	0.952	0.065	0.295	3.2e-05
TAIR|locus:2092722	305	LST8-1 "AT3G18140" [Arabidopsi	0.845	0.232	0.303	3.5e-05
ZFIN|ZDB-GENE-061110-97	487	zgc:154085 "zgc:154085" [Danio	0.916	0.158	0.309	3.5e-05
CGD|CAL0004039	735	orf19.3301 [Candida albicans (	0.928	0.106	0.298	3.7e-05
TAIR|locus:2036823	1216	AT1G62020 [Arabidopsis thalian	0.952	0.065	0.295	4.1e-05
FB|FBgn0033440	322	CG10459 [Drosophila melanogast	0.380	0.099	0.406	4.5e-05
CGD|CAL0000105	1221	orf19.1672 [Candida albicans (	0.928	0.063	0.325	6.7e-05
MGI|MGI:1917485	405	Poc1a "POC1 centriolar protein	0.904	0.187	0.265	7.1e-05

TAIR|locus:2135393 AT4G04940 "AT4G04940" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 5.2e-06, P = 5.2e-06
 Identities = 30/84 (35%), Positives = 45/84 (53%)

Query:     1 DGSIIHTFVHSNNSAVRSISFCSKQHTLI-SGGDDGSICMWNLNSKLCDSAVR------- 52
             D  I+ TF H++  AV ++SF +    L+ SGG  G I +WNLN K   S +R       
Sbjct:   213 DEEIV-TFEHASRGAVTALSFSTDGRPLLASGGSFGVISIWNLNKKRLQSVIRDAHDSSI 271

Query:    53 -SISFCSKQRTLISGGDDGSICMW 75
              S++F + +  L+S   D S+ MW
Sbjct:   272 ISLNFLANEPVLMSASADNSLKMW 295

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006364 "rRNA processing" evidence=IEA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

TAIR|locus:2082891 RID3 "AT3G49180" [Arabidopsis thaliana (taxid:3702)]

 Score = 73 (30.8 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
 Identities = 11/30 (36%), Positives = 20/30 (66%)

Query:    50 AVRSISFCSKQRTLISGGDDGSICMWNLNS 79
             A+  +++C+    LISG +DG +C+W+  S
Sbjct:   265 AITCLAYCADGNLLISGSEDGVVCVWDPKS 294

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

TAIR|locus:2050064 AT2G21390 [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 3.2e-05, P = 3.2e-05
 Identities = 26/88 (29%), Positives = 43/88 (48%)

Query:     2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSA-------VRSI 54
             G++I  F   +   VR + F + Q   +SGGDD  I +WN  +  C          +R++
Sbjct:    41 GTLIDRF-DEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIRTV 99

Query:    55 SFCSKQRTLISGGDDGSICMWNLNSKLC 82
              F  +   ++S  DD +I +WN  S+ C
Sbjct:   100 QFHHENPWIVSASDDQTIRIWNWQSRTC 127

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005215 "transporter activity" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IDA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TAIR|locus:2092722 LST8-1 "AT3G18140" [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 3.5e-05, P = 3.5e-05
 Identities = 24/79 (30%), Positives = 42/79 (53%)

Query:    10 HSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCD------SAVRSISFCSKQRTL 63
             H+NN  V ++ F      + SG +DG++ +W+L +  C       +AV ++     Q  L
Sbjct:    77 HTNN--VMAVGFQCDAKWMYSGSEDGTVKIWDLRAPGCQKEYESVAAVNTVVLHPNQTEL 134

Query:    64 ISGGDDGSICMWNLNSKLC 82
             ISG  +G+I +W+L +  C
Sbjct:   135 ISGDQNGNIRVWDLRANSC 153

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0005768 "endosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048571 "long-day photoperiodism" evidence=IMP

GO:1900088 "regulation of inositol biosynthetic process" evidence=IMP

GO:1900091 "regulation of raffinose biosynthetic process" evidence=IMP

ZFIN|ZDB-GENE-061110-97 zgc:154085 "zgc:154085" [Danio rerio (taxid:7955)]

 Score = 107 (42.7 bits), Expect = 3.5e-05, P = 3.5e-05
 Identities = 26/84 (30%), Positives = 40/84 (47%)

Query:     2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSI 54
             G I     H   S VR  +F      L+SGG DGSI +W+  S+         D+++ + 
Sbjct:    86 GEIEAVLEHPGRSPVRVCAFSPDSSHLVSGGSDGSIALWDFTSRTLRRTGVVNDTSIVAC 145

Query:    55 SFCSKQRTLISGGDDGSICMWNLN 78
             SF    +  I+G   G + +W+LN
Sbjct:   146 SFTPCGQMFITGSTYGDLRLWDLN 169

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

CGD|CAL0004039 orf19.3301 [Candida albicans (taxid:5476)]

 Score = 109 (43.4 bits), Expect = 3.7e-05, P = 3.7e-05
 Identities = 26/87 (29%), Positives = 46/87 (52%)

Query:     2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSA------VRSIS 55
             G  I T+   +  AV S+ F +K  +++SG  D ++ +W+++S+ C +       V  + 
Sbjct:   453 GQCIATY-RGHEDAVVSVDFTNK--SIVSGSADHTVRVWHVDSRTCYTLRGHTDWVNHVK 509

Query:    56 FCSKQRTLISGGDDGSICMWNLNSKLC 82
               S   T+ S  DD +I MW++NS  C
Sbjct:   510 IHSASNTIFSASDDTTIRMWDMNSNEC 536

GO:0043224 "nuclear SCF ubiquitin ligase complex" evidence=IEA

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0000114 "regulation of transcription involved in G1 phase of mitotic cell cycle" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEA

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IEA

GO:0046685 "response to arsenic-containing substance" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

TAIR|locus:2036823 AT1G62020 [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 4.1e-05, P = 4.1e-05
 Identities = 26/88 (29%), Positives = 43/88 (48%)

Query:     2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSA-------VRSI 54
             G++I  F   +   VR + F + Q   +SGGDD  I +WN  +  C          +R++
Sbjct:    41 GTLIDRF-DEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKNHRCLFTLLGHLDYIRTV 99

Query:    55 SFCSKQRTLISGGDDGSICMWNLNSKLC 82
              F  +   ++S  DD +I +WN  S+ C
Sbjct:   100 QFHHEYPWIVSASDDQTIRIWNWQSRTC 127

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005215 "transporter activity" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0009630 "gravitropism" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

FB|FBgn0033440 CG10459 [Drosophila melanogaster (taxid:7227)]

 Score = 64 (27.6 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query:    49 SAVRSISFCSKQRTLISGGDDGSICMWNLNSK 80
             SAV ++SF         G  DGSI +W +N K
Sbjct:   270 SAVLALSFSPDGEVCAIGSQDGSIILWQMNPK 301

GO:0005575 "cellular_component" evidence=ND

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=ISS

GO:0005102 "receptor binding" evidence=ISS

CGD|CAL0000105 orf19.1672 [Candida albicans (taxid:5476)]

 Score = 109 (43.4 bits), Expect = 6.7e-05, P = 6.7e-05
 Identities = 28/86 (32%), Positives = 45/86 (52%)

Query:     2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSA-------VRSI 54
             G++I  F   +   VRS+ F   Q   +SGGDD +I +W+LN++ C          +R +
Sbjct:    43 GTLIDRF-EDHVGPVRSVDFHPTQPLFVSGGDDYTIKVWSLNTRKCIFTLNGHLDYIRGV 101

Query:    55 SFCSKQRTLISGGDDGSICMWNLNSK 80
             SF      +IS  DD +I +WN  ++
Sbjct:   102 SFHHDLPWIISCSDDQTIRIWNWQNR 127

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

MGI|MGI:1917485 Poc1a "POC1 centriolar protein homolog A (Chlamydomonas)" [Mus musculus (taxid:10090)]

 Score = 103 (41.3 bits), Expect = 7.1e-05, P = 7.1e-05
 Identities = 22/83 (26%), Positives = 46/83 (55%)

Query:     7 TFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLN-SKLCDSAVRSISF--CSK---- 59
             T   ++ + VRS+ FCS   +L++  DD ++ +W+ +  +   S  + I++  C+K    
Sbjct:    97 TVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWSTHRQRFLFSLTQHINWVRCAKFSPD 156

Query:    60 QRTLISGGDDGSICMWNLNSKLC 82
              R ++S  DD ++ +W+  S+ C
Sbjct:   157 GRLIVSASDDKTVKLWDKTSREC 179

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005814 "centriole" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005932 "microtubule basal body" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0030030 "cell projection organization" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	84
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-07

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 55.0 bits (133), Expect = 1e-10
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 8/90 (8%)

Query: 2   GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSI 54
           G  + T    +   V S++F      L+S   DG+I +W+L++  C       ++ V S+
Sbjct: 167 GKCVATL-TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV 225

Query: 55  SFCSKQRTLISGGDDGSICMWNLNSKLCDR 84
           +F      L SG +DG+I +W+L +  C +
Sbjct: 226 AFSPDGYLLASGSEDGTIRVWDLRTGECVQ 255

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 47.3 bits (113), Expect = 8e-08
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 7/79 (8%)

Query: 13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDS-------AVRSISFCSKQRTLIS 65
             V  ++F      L +G  DG+I +W+L +             VR ++  +    L S
Sbjct: 9  TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLAS 68

Query: 66 GGDDGSICMWNLNSKLCDR 84
          G  D +I +W+L +  C R
Sbjct: 69 GSSDKTIRLWDLETGECVR 87

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 46.6 bits (111), Expect = 1e-07
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 1   DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRS 53
            G  + T    + S V S++F      L S   D +I +W++ +  C          V S
Sbjct: 82  TGECVRTL-TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNS 140

Query: 54  ISFCSKQRTLISGGDDGSICMWNLNSKLC 82
           ++F      + S   DG+I +W+L +  C
Sbjct: 141 VAFSPDGTFVASSSQDGTIKLWDLRTGKC 169

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 46.2 bits (110), Expect = 2e-07
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 8/83 (9%)

Query: 1   DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRS 53
            G  + T    + + V S++F    + L SG +DG+I +W+L +  C        ++V S
Sbjct: 208 TGKCLGTL-RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTS 266

Query: 54  ISFCSKQRTLISGGDDGSICMWN 76
           +++    + L SG  DG+I +W+
Sbjct: 267 LAWSPDGKRLASGSADGTIRIWD 289

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	84
KOG0271|consensus	480		99.83
KOG0272|consensus	459		99.78
KOG0272|consensus	459		99.78
KOG0263|consensus	707		99.77
KOG0263|consensus	707		99.75
KOG0266|consensus	456		99.74
KOG0279|consensus	315		99.73
KOG0271|consensus	480		99.73
KOG0286|consensus	343		99.71
KOG0315|consensus	311		99.71
PTZ00421	493	coronin; Provisional	99.7
KOG0266|consensus	456		99.69
KOG0273|consensus	524		99.69
KOG0279|consensus	315		99.69
KOG0318|consensus	603		99.68
KOG0315|consensus	311		99.67
KOG0282|consensus	503		99.67
KOG0295|consensus	406		99.64
PTZ00420	568	coronin; Provisional	99.63
KOG0286|consensus	343		99.63
KOG0265|consensus	338		99.63
KOG0291|consensus	893		99.63
KOG0275|consensus	508		99.62
KOG0284|consensus	464		99.61
KOG0283|consensus	712		99.61
PTZ00421	493	coronin; Provisional	99.61
PTZ00420	568	coronin; Provisional	99.61
KOG1407|consensus	313		99.6
KOG0291|consensus	893		99.59
KOG0285|consensus	460		99.58
KOG0292|consensus	1202		99.58
KOG0285|consensus	460		99.57
KOG0645|consensus	312		99.57
KOG0316|consensus	307		99.57
KOG0264|consensus	422		99.57
KOG0284|consensus	464		99.56
KOG1273|consensus	405		99.55
KOG4283|consensus	397		99.54
KOG0643|consensus	327		99.53
KOG0647|consensus	347		99.53
KOG0283|consensus	712		99.53
KOG0276|consensus	794		99.53
KOG0316|consensus	307		99.53
KOG0295|consensus	406		99.52
KOG0319|consensus	775		99.52
KOG0273|consensus	524		99.52
KOG1446|consensus	311		99.52
KOG0318|consensus	603		99.51
PLN00181	793	protein SPA1-RELATED; Provisional	99.51
KOG0276|consensus	794		99.51
KOG2394|consensus	636		99.5
KOG0282|consensus	503		99.5
KOG0302|consensus	440		99.5
KOG0269|consensus	839		99.49
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.49
KOG0277|consensus	311		99.48
KOG1274|consensus	933		99.48
KOG1034|consensus	385		99.48
KOG1539|consensus	910		99.48
KOG0264|consensus	422		99.47
KOG0973|consensus	942		99.47
KOG0640|consensus	430		99.46
KOG0293|consensus	519		99.46
KOG0275|consensus	508		99.46
KOG0313|consensus	423		99.46
KOG0645|consensus	312		99.46
KOG0265|consensus	338		99.45
KOG0278|consensus	334		99.45
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.44
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.44
KOG0319|consensus	775		99.44
KOG0647|consensus	347		99.43
KOG0289|consensus	506		99.43
KOG0772|consensus	641		99.43
KOG0640|consensus	430		99.42
KOG0313|consensus	423		99.42
KOG0641|consensus	350		99.42
KOG1446|consensus	311		99.41
KOG0302|consensus	440		99.41
KOG0292|consensus	1202		99.41
KOG0296|consensus	399		99.41
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.4
KOG0643|consensus	327		99.4
KOG1539|consensus	910		99.39
KOG2110|consensus	391		99.39
KOG0296|consensus	399		99.39
KOG0268|consensus	433		99.39
KOG0305|consensus	484		99.39
KOG2111|consensus	346		99.38
KOG0310|consensus	487		99.38
KOG0303|consensus	472		99.38
KOG0646|consensus	476		99.38
KOG1445|consensus	1012		99.37
KOG0310|consensus	487		99.36
KOG1310|consensus	758		99.36
KOG0281|consensus	499		99.36
KOG0973|consensus	942		99.36
KOG0281|consensus	499		99.34
KOG1273|consensus	405		99.34
KOG0772|consensus	641		99.34
PLN00181	793	protein SPA1-RELATED; Provisional	99.34
KOG0277|consensus	311		99.34
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.33
KOG0267|consensus	825		99.32
KOG0293|consensus	519		99.31
KOG0305|consensus	484		99.31
KOG0274|consensus	537		99.31
KOG0274|consensus	537		99.3
KOG0269|consensus	839		99.3
KOG0300|consensus	481		99.3
KOG0294|consensus	362		99.28
KOG1063|consensus	764		99.28
KOG0308|consensus	735		99.27
KOG1188|consensus	376		99.27
KOG0288|consensus	459		99.26
KOG2048|consensus	691		99.25
KOG1009|consensus	434		99.24
KOG0289|consensus	506		99.24
KOG1407|consensus	313		99.23
KOG0278|consensus	334		99.23
KOG0294|consensus	362		99.23
KOG1272|consensus	545		99.22
KOG0303|consensus	472		99.22
KOG0642|consensus	577		99.2
KOG0300|consensus	481		99.2
KOG4283|consensus	397		99.2
KOG2096|consensus	420		99.2
KOG0290|consensus	364		99.19
KOG0641|consensus	350		99.19
KOG1332|consensus	299		99.17
KOG0306|consensus	888		99.17
KOG0639|consensus	705		99.16
KOG1036|consensus	323		99.16
KOG0306|consensus	888		99.16
KOG0267|consensus	825		99.16
KOG2919|consensus	406		99.14
KOG0308|consensus	735		99.13
KOG0307|consensus	1049		99.13
KOG2096|consensus	420		99.13
KOG0299|consensus	479		99.13
KOG0646|consensus	476		99.11
KOG0771|consensus	398		99.11
KOG0649|consensus	325		99.1
KOG2445|consensus	361		99.09
KOG0322|consensus	323		99.09
KOG0270|consensus	463		99.09
KOG0639|consensus	705		99.08
KOG0268|consensus	433		99.08
KOG0301|consensus	745		99.08
KOG1036|consensus	323		99.07
KOG0288|consensus	459		99.06
KOG4328|consensus	498		99.06
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	99.06
KOG3881|consensus	412		99.06
KOG0321|consensus	720		99.05
KOG0270|consensus	463		99.05
KOG1538|consensus	1081		99.04
KOG0299|consensus	479		99.03
KOG0649|consensus	325		99.03
KOG2055|consensus	514		99.03
KOG0321|consensus	720		99.02
KOG2048|consensus	691		99.01
KOG0280|consensus	339		99.01
KOG2321|consensus	703		99.01
KOG3914|consensus	390		99.0
KOG4227|consensus	609		99.0
KOG1188|consensus	376		98.99
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.97
KOG0650|consensus	733		98.95
KOG2055|consensus	514		98.95
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.93
KOG1332|consensus	299		98.93
KOG0301|consensus	745		98.92
KOG1274|consensus	933		98.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.88
KOG2106|consensus	626		98.88
KOG4378|consensus	673		98.86
KOG2110|consensus	391		98.85
KOG0974|consensus	967		98.85
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.85
KOG0290|consensus	364		98.85
KOG1524|consensus	737		98.84
KOG2106|consensus	626		98.83
KOG0771|consensus	398		98.82
COG2319	466	FOG: WD40 repeat [General function prediction only	98.82
KOG0642|consensus	577		98.82
KOG1240|consensus	1431		98.82
KOG2139|consensus	445		98.8
KOG1007|consensus	370		98.8
KOG1009|consensus	434		98.8
KOG4227|consensus	609		98.79
KOG1445|consensus	1012		98.78
KOG1523|consensus	361		98.78
KOG4378|consensus	673		98.78
KOG4328|consensus	498		98.76
KOG1587|consensus	555		98.76
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.76
KOG1034|consensus	385		98.76
KOG1409|consensus	404		98.74
KOG1524|consensus	737		98.7
KOG0644|consensus	1113		98.69
KOG1063|consensus	764		98.68
KOG2394|consensus	636		98.68
KOG1007|consensus	370		98.67
KOG1587|consensus	555		98.65
KOG1272|consensus	545		98.65
KOG2445|consensus	361		98.64
KOG0322|consensus	323		98.63
KOG4547|consensus	541		98.63
KOG0644|consensus	1113		98.63
KOG1963|consensus	792		98.62
KOG0307|consensus	1049		98.62
KOG1310|consensus	758		98.61
KOG1538|consensus	1081		98.61
KOG1408|consensus	1080		98.61
PRK01742	429	tolB translocation protein TolB; Provisional	98.61
KOG1523|consensus	361		98.61
COG4946	668	Uncharacterized protein related to the periplasmic	98.58
KOG1963|consensus	792		98.58
KOG1408|consensus	1080		98.58
KOG2919|consensus	406		98.57
KOG0650|consensus	733		98.56
KOG4714|consensus	319		98.54
KOG2315|consensus	566		98.45
PRK05137	435	tolB translocation protein TolB; Provisional	98.45
COG2319	466	FOG: WD40 repeat [General function prediction only	98.38
KOG2315|consensus	566		98.32
PRK03629	429	tolB translocation protein TolB; Provisional	98.32
PRK04922	433	tolB translocation protein TolB; Provisional	98.31
PRK02889	427	tolB translocation protein TolB; Provisional	98.29
KOG3881|consensus	412		98.28
PRK11028	330	6-phosphogluconolactonase; Provisional	98.27
PRK00178	430	tolB translocation protein TolB; Provisional	98.25
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	98.23
KOG1517|consensus	1387		98.2
KOG1517|consensus	1387		98.19
KOG2139|consensus	445		98.18
KOG4532|consensus	344		98.18
KOG1064|consensus	2439		98.18
PRK11028	330	6-phosphogluconolactonase; Provisional	98.16
KOG2111|consensus	346		98.14
KOG1064|consensus	2439		98.13
KOG2695|consensus	425		98.1
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.09
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.08
KOG4497|consensus	447		98.08
KOG4532|consensus	344		98.02
KOG2695|consensus	425		98.01
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.99
KOG1240|consensus	1431		97.98
KOG1409|consensus	404		97.97
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.97
KOG1334|consensus	559		97.97
KOG4190|consensus	1034		97.96
KOG4640|consensus	665		97.96
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.95
KOG0974|consensus	967		97.95
PRK01742	429	tolB translocation protein TolB; Provisional	97.94
PRK04792	448	tolB translocation protein TolB; Provisional	97.91
KOG1334|consensus	559		97.91
KOG1645|consensus	463		97.91
PRK02889	427	tolB translocation protein TolB; Provisional	97.88
KOG4190|consensus	1034		97.84
PRK04922	433	tolB translocation protein TolB; Provisional	97.81
PRK01029	428	tolB translocation protein TolB; Provisional	97.8
PRK03629	429	tolB translocation protein TolB; Provisional	97.8
KOG2041|consensus	1189		97.79
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.78
KOG4497|consensus	447		97.78
PRK01029	428	tolB translocation protein TolB; Provisional	97.76
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.72
PRK05137	435	tolB translocation protein TolB; Provisional	97.7
KOG3617|consensus	1416		97.7
KOG2321|consensus	703		97.7
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.66
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.64
KOG1275|consensus	1118		97.63
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.58
KOG3621|consensus	726		97.55
KOG0309|consensus	1081		97.54
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.49
KOG2079|consensus	1206		97.48
KOG4714|consensus	319		97.48
PRK00178	430	tolB translocation protein TolB; Provisional	97.46
KOG0882|consensus	558		97.41
KOG2079|consensus	1206		97.41
KOG1354|consensus	433		97.39
KOG4640|consensus	665		97.39
KOG4547|consensus	541		97.35
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.32
KOG2041|consensus	1189		97.27
KOG1354|consensus	433		97.18
PRK04792	448	tolB translocation protein TolB; Provisional	97.13
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.1
KOG0280|consensus	339		97.05
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	96.96
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	96.95
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.94
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	96.89
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	96.88
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	96.87
KOG2314|consensus	698		96.78
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.76
KOG2066|consensus	846		96.76
KOG1275|consensus	1118		96.76
COG4946	668	Uncharacterized protein related to the periplasmic	96.75
KOG1912|consensus	1062		96.75
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	96.74
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.6
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	96.57
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.43
KOG1920|consensus	1265		96.39
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	96.33
KOG3914|consensus	390		96.3
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.14
PRK04043	419	tolB translocation protein TolB; Provisional	96.07
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	95.78
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	95.69
KOG2314|consensus	698		95.68
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	95.61
KOG3617|consensus	1416		95.55
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.54
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.43
KOG1832|consensus	1516		95.42
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	95.42
PRK02888	635	nitrous-oxide reductase; Validated	95.18
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.09
KOG4649|consensus	354		95.05
PRK04043	419	tolB translocation protein TolB; Provisional	95.02
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.02
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	94.82
KOG0882|consensus	558		94.66
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.52
KOG1645|consensus	463		94.47
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	94.4
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	94.26
KOG0309|consensus	1081		94.24
KOG2114|consensus	933		93.88
KOG3621|consensus	726		93.87
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	93.81
KOG2444|consensus	238		93.77
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.35
PRK02888	635	nitrous-oxide reductase; Validated	93.32
KOG4460|consensus	741		93.29
KOG2395|consensus	644		92.77
KOG1920|consensus	1265		92.44
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	92.38
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.33
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	92.23
KOG1008|consensus	783		92.04
KOG2395|consensus	644		91.52
KOG1008|consensus	783		91.48
KOG1912|consensus	1062		91.43
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	91.16
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	90.79
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	90.65
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	90.35
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	90.35
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	90.34
KOG3616|consensus	1636		90.33
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	90.29
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	90.08
KOG2377|consensus	657		89.98
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.58
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	89.37
KOG3630|consensus	1405		89.23
KOG2444|consensus	238		89.0
KOG2377|consensus	657		88.74
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	88.52
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	88.37
PRK13616	591	lipoprotein LpqB; Provisional	88.35
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	87.07
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	87.02
PF12768	281	Rax2: Cortical protein marker for cell polarity	86.99
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	86.96
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	86.5
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	86.49
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	86.21
KOG1832|consensus	1516		85.88
COG5167	776	VID27 Protein involved in vacuole import and degra	85.75
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	85.62
KOG1916|consensus	1283		85.3
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	85.15
KOG2066|consensus	846		85.12
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	85.03
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	84.95
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	84.77
KOG1916|consensus	1283		84.58
KOG3630|consensus	1405		83.93
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	83.22
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	83.06
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	81.7
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	81.46
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	80.83
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	80.51
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	80.12
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	80.04

>KOG0271|consensus

Probab=99.83  E-value=6.6e-20  Score=100.78  Aligned_cols=79  Identities=22%  Similarity=0.449  Sum_probs=72.0

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      +-..+.+| .++|.++.|+|+++.|++|+.|..+++||+.+..+       .+.|.+++|+|+++.+++|+.+|.|++||
T Consensus       107 CssS~~GH-~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  107 CSSSIAGH-GEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD  185 (480)
T ss_pred             eccccCCC-CCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence            44567889 99999999999999999999999999999987765       67899999999999999999999999999


Q ss_pred             CCCCeec
Q psy16880         77 LNSKLCD   83 (84)
Q Consensus        77 ~~~~~~~   83 (84)
                      +.+++++
T Consensus       186 pktg~~~  192 (480)
T KOG0271|consen  186 PKTGQQI  192 (480)
T ss_pred             CCCCCcc
Confidence            9887754

>KOG0272|consensus

Probab=99.78  E-value=2.9e-18  Score=94.94  Aligned_cols=83  Identities=16%  Similarity=0.320  Sum_probs=75.4

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEcc-CCCEEEEecCCCcE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCS-KQRTLISGGDDGSI   72 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~-~~~~~~~~~~~~~i   72 (84)
                      +|+++..+.+| ..+|..++|+|+|..+++|+.|+.+++||++....       .+.|+.+.|.| .|.++++++.|+++
T Consensus       334 tgr~im~L~gH-~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~  412 (459)
T KOG0272|consen  334 TGRCIMFLAGH-IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTV  412 (459)
T ss_pred             cCcEEEEeccc-ccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcce
Confidence            58899999999 99999999999999999999999999999986554       67899999998 77899999999999


Q ss_pred             EEEeCCCCeecC
Q psy16880         73 CMWNLNSKLCDR   84 (84)
Q Consensus        73 ~~~~~~~~~~~~   84 (84)
                      ++|..++..+++
T Consensus       413 kiWs~~~~~~~k  424 (459)
T KOG0272|consen  413 KIWSTRTWSPLK  424 (459)
T ss_pred             eeecCCCcccch
Confidence            999998877653

>KOG0272|consensus

Probab=99.78  E-value=6.9e-19  Score=97.36  Aligned_cols=78  Identities=22%  Similarity=0.346  Sum_probs=70.7

Q ss_pred             EEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880          5 IHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNL   77 (84)
Q Consensus         5 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (84)
                      +...++| ...|.+++|.++|+++++|+.|..-++||++++..       ..+|..++|+|+|..+++|+.|++++|||+
T Consensus       296 lL~QEGH-s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDL  374 (459)
T KOG0272|consen  296 LLLQEGH-SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDL  374 (459)
T ss_pred             hHhhccc-ccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeee
Confidence            3445788 89999999999999999999999999999999877       678999999999999999999999999999


Q ss_pred             CCCeec
Q psy16880         78 NSKLCD   83 (84)
Q Consensus        78 ~~~~~~   83 (84)
                      +....+
T Consensus       375 R~r~~l  380 (459)
T KOG0272|consen  375 RMRSEL  380 (459)
T ss_pred             cccccc
Confidence            876653

>KOG0263|consensus

Probab=99.77  E-value=2.4e-18  Score=100.25  Aligned_cols=80  Identities=24%  Similarity=0.468  Sum_probs=74.0

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      ++++.+-+| .+.|.|++|+|+..++++|+.|.++++||+.++..       .+.|.+++|+|+|+++++++.|+.|++|
T Consensus       526 ~PlRifagh-lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iW  604 (707)
T KOG0263|consen  526 KPLRIFAGH-LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIW  604 (707)
T ss_pred             Cchhhhccc-ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEE
Confidence            467788888 99999999999999999999999999999998866       7789999999999999999999999999


Q ss_pred             eCCCCeec
Q psy16880         76 NLNSKLCD   83 (84)
Q Consensus        76 ~~~~~~~~   83 (84)
                      |+.++..+
T Consensus       605 Dl~~~~~v  612 (707)
T KOG0263|consen  605 DLANGSLV  612 (707)
T ss_pred             EcCCCcch
Confidence            99987654

>KOG0263|consensus

Probab=99.75  E-value=4e-17  Score=95.28  Aligned_cols=78  Identities=29%  Similarity=0.585  Sum_probs=73.0

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      +|..++.+.+| .++|.+++|+|+|++|++|+.++.+.+||+..+..       .+.|..+.|+.++..+++++.|+.++
T Consensus       566 ~G~~VRiF~GH-~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~  644 (707)
T KOG0263|consen  566 TGNSVRIFTGH-KGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVR  644 (707)
T ss_pred             CCcEEEEecCC-CCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEE
Confidence            57889999999 99999999999999999999999999999988766       77899999999999999999999999


Q ss_pred             EEeCCC
Q psy16880         74 MWNLNS   79 (84)
Q Consensus        74 ~~~~~~   79 (84)
                      +||+..
T Consensus       645 lWD~~~  650 (707)
T KOG0263|consen  645 LWDLTK  650 (707)
T ss_pred             EEEchh
Confidence            999864

>KOG0266|consensus

Probab=99.74  E-value=1.5e-16  Score=91.02  Aligned_cols=79  Identities=27%  Similarity=0.623  Sum_probs=73.4

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICM   74 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~   74 (84)
                      +..++++++| ...|.+++|+|+++.+++|+.|+.+++||++++..       ...|.+++|.+++..+++++.|+.|++
T Consensus       236 ~~~~~~l~gH-~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~v  314 (456)
T KOG0266|consen  236 GRNLKTLKGH-STYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRV  314 (456)
T ss_pred             CeEEEEecCC-CCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEE
Confidence            5678899999 99999999999999999999999999999998655       678999999999999999999999999


Q ss_pred             EeCCCCe
Q psy16880         75 WNLNSKL   81 (84)
Q Consensus        75 ~~~~~~~   81 (84)
                      ||+.++.
T Consensus       315 wd~~~~~  321 (456)
T KOG0266|consen  315 WDLETGS  321 (456)
T ss_pred             EECCCCc
Confidence            9999877

>KOG0279|consensus

Probab=99.73  E-value=8.5e-17  Score=85.60  Aligned_cols=81  Identities=23%  Similarity=0.421  Sum_probs=72.8

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccC--CCEEEEecCCC
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSK--QRTLISGGDDG   70 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~--~~~~~~~~~~~   70 (84)
                      +|+..+.|.+| ...|.+++++++.+.+++|+.|..+.+|+......        +..|+++.|+|+  ...+++++.|+
T Consensus        94 ~g~~t~~f~GH-~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dk  172 (315)
T KOG0279|consen   94 TGESTRRFVGH-TKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDK  172 (315)
T ss_pred             CCcEEEEEEec-CCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCc
Confidence            46888999999 99999999999999999999999999999976544        457999999998  68999999999


Q ss_pred             cEEEEeCCCCee
Q psy16880         71 SICMWNLNSKLC   82 (84)
Q Consensus        71 ~i~~~~~~~~~~   82 (84)
                      ++++||+++.+.
T Consensus       173 tvKvWnl~~~~l  184 (315)
T KOG0279|consen  173 TVKVWNLRNCQL  184 (315)
T ss_pred             eEEEEccCCcch
Confidence            999999987654

>KOG0271|consensus

Probab=99.73  E-value=6.6e-17  Score=89.22  Aligned_cols=81  Identities=21%  Similarity=0.409  Sum_probs=71.7

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEcc-----CCCEEEEecC
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCS-----KQRTLISGGD   68 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~-----~~~~~~~~~~   68 (84)
                      ..+..+.++| ...|.|++|+|++..+++|+.++.+++||..++..        ...|.+++|.|     ..+.+++++.
T Consensus       147 eTp~~t~KgH-~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~sk  225 (480)
T KOG0271|consen  147 ETPLFTCKGH-KNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSK  225 (480)
T ss_pred             CCcceeecCC-ccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccC
Confidence            4567788899 99999999999999999999999999999887766        67899999986     4578899999


Q ss_pred             CCcEEEEeCCCCeec
Q psy16880         69 DGSICMWNLNSKLCD   83 (84)
Q Consensus        69 ~~~i~~~~~~~~~~~   83 (84)
                      ||.++|||+..+.++
T Consensus       226 Dg~vrIWd~~~~~~~  240 (480)
T KOG0271|consen  226 DGSVRIWDTKLGTCV  240 (480)
T ss_pred             CCCEEEEEccCceEE
Confidence            999999999887664

>KOG0286|consensus

Probab=99.71  E-value=3.2e-16  Score=84.00  Aligned_cols=82  Identities=26%  Similarity=0.485  Sum_probs=75.6

Q ss_pred             CCceEEEeccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSI   72 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i   72 (84)
                      +|+.++.+.+| .+.|.++++.| +++.+++|+.|...++||++.+..       +..|..++|.|++.-+++|+.|+++
T Consensus       175 ~g~~~~~f~GH-~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tc  253 (343)
T KOG0286|consen  175 TGQQTQVFHGH-TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATC  253 (343)
T ss_pred             cceEEEEecCC-cccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCcee
Confidence            57888999999 99999999999 899999999999999999998866       7789999999999999999999999


Q ss_pred             EEEeCCCCeec
Q psy16880         73 CMWNLNSKLCD   83 (84)
Q Consensus        73 ~~~~~~~~~~~   83 (84)
                      ++||++..+.+
T Consensus       254 RlyDlRaD~~~  264 (343)
T KOG0286|consen  254 RLYDLRADQEL  264 (343)
T ss_pred             EEEeecCCcEE
Confidence            99999976543

>KOG0315|consensus

Probab=99.71  E-value=4.5e-16  Score=82.08  Aligned_cols=79  Identities=29%  Similarity=0.641  Sum_probs=72.3

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      .++.++++| .+.|.++.|..+|+.+.+|+.||.+++||++....      ...|.++..+|+...++++..+|.|++||
T Consensus        74 ~Pv~t~e~h-~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWD  152 (311)
T KOG0315|consen   74 NPVATFEGH-TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWD  152 (311)
T ss_pred             CceeEEecc-CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEE
Confidence            378899999 99999999999999999999999999999998655      77899999999999999999999999999


Q ss_pred             CCCCee
Q psy16880         77 LNSKLC   82 (84)
Q Consensus        77 ~~~~~~   82 (84)
                      +....+
T Consensus       153 l~~~~c  158 (311)
T KOG0315|consen  153 LGENSC  158 (311)
T ss_pred             ccCCcc
Confidence            987643

>PTZ00421 coronin; Provisional

Probab=99.70  E-value=8.4e-16  Score=88.60  Aligned_cols=80  Identities=15%  Similarity=0.226  Sum_probs=70.0

Q ss_pred             ceEEEeccCCCcCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICM   74 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~   74 (84)
                      .++..+.+| ...|.+++|+|++ ..|++++.|+.+++||+.....       ...|.+++|+|++..+++++.|+.|++
T Consensus       116 ~~l~~L~gH-~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrI  194 (493)
T PTZ00421        116 DPIVHLQGH-TKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNI  194 (493)
T ss_pred             cceEEecCC-CCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEE
Confidence            356678888 9999999999975 6899999999999999987654       557999999999999999999999999


Q ss_pred             EeCCCCeec
Q psy16880         75 WNLNSKLCD   83 (84)
Q Consensus        75 ~~~~~~~~~   83 (84)
                      ||+++++.+
T Consensus       195 wD~rsg~~v  203 (493)
T PTZ00421        195 IDPRDGTIV  203 (493)
T ss_pred             EECCCCcEE
Confidence            999987653

>KOG0266|consensus

Probab=99.69  E-value=7.3e-16  Score=88.27  Aligned_cols=79  Identities=25%  Similarity=0.606  Sum_probs=69.7

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCC-CC-------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSK-LC-------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~-~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      .++.+.+| ...|..++|+|+++.+++++.|..+++||+... ..       ...|++++|+|+++.+++|+.|++|++|
T Consensus       195 ~~~~l~~h-~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriW  273 (456)
T KOG0266|consen  195 LLRELSGH-TRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIW  273 (456)
T ss_pred             hhcccccc-ccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEE
Confidence            45566778 899999999999999999999999999999433 22       6789999999999999999999999999


Q ss_pred             eCCCCeec
Q psy16880         76 NLNSKLCD   83 (84)
Q Consensus        76 ~~~~~~~~   83 (84)
                      |+++++++
T Consensus       274 d~~~~~~~  281 (456)
T KOG0266|consen  274 DVRTGECV  281 (456)
T ss_pred             eccCCeEE
Confidence            99987765

>KOG0273|consensus

Probab=99.69  E-value=6e-16  Score=86.99  Aligned_cols=80  Identities=24%  Similarity=0.470  Sum_probs=67.1

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----------------------------------
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----------------------------------   47 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----------------------------------   47 (84)
                      .|+.++.+| .+.|.+|.|+|.+.+|++++.|+++++|.......                                   
T Consensus       350 ~P~~t~~GH-~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sa  428 (524)
T KOG0273|consen  350 RPVKTFIGH-HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASA  428 (524)
T ss_pred             Ccceeeecc-cCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEe
Confidence            467788888 99999999999999999999999999999754432                                   


Q ss_pred             -----------------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         48 -----------------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        48 -----------------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                                             +.+|+.++|+|+++++++|+.|+.+++|+.++++.+
T Consensus       429 s~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~  487 (524)
T KOG0273|consen  429 SFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLV  487 (524)
T ss_pred             ecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhee
Confidence                                   557888888888888888888888888888777654

>KOG0279|consensus

Probab=99.69  E-value=6.1e-16  Score=82.42  Aligned_cols=79  Identities=23%  Similarity=0.440  Sum_probs=72.5

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICM   74 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~   74 (84)
                      |.+++.+++| ...|..+..+++++++++++.|+.+++||+.++..       ...|.+++|+++.+.+++++.|++|++
T Consensus        53 G~~~r~~~GH-sH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTikl  131 (315)
T KOG0279|consen   53 GVPVRRLTGH-SHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKL  131 (315)
T ss_pred             Cceeeeeecc-ceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeee
Confidence            7789999998 99999999999999999999999999999988654       678999999999999999999999999


Q ss_pred             EeCCCCe
Q psy16880         75 WNLNSKL   81 (84)
Q Consensus        75 ~~~~~~~   81 (84)
                      |+.-...
T Consensus       132 wnt~g~c  138 (315)
T KOG0279|consen  132 WNTLGVC  138 (315)
T ss_pred             eeecccE
Confidence            9986543

>KOG0318|consensus

Probab=99.68  E-value=1.3e-15  Score=86.69  Aligned_cols=76  Identities=13%  Similarity=0.358  Sum_probs=68.6

Q ss_pred             EeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880          7 TFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      +++.| ...|.++.|+|+|+++++++.|+.+.+||-.++..          .+.|.+++|+|++..+++++.|.++++||
T Consensus       185 s~r~H-skFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWd  263 (603)
T KOG0318|consen  185 SFREH-SKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWD  263 (603)
T ss_pred             ccccc-ccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEE
Confidence            44556 78899999999999999999999999999887755          67899999999999999999999999999


Q ss_pred             CCCCeec
Q psy16880         77 LNSKLCD   83 (84)
Q Consensus        77 ~~~~~~~   83 (84)
                      ..+.+++
T Consensus       264 Vs~~slv  270 (603)
T KOG0318|consen  264 VSTNSLV  270 (603)
T ss_pred             eeccceE
Confidence            9887764

>KOG0315|consensus

Probab=99.67  E-value=1.1e-15  Score=80.62  Aligned_cols=81  Identities=25%  Similarity=0.524  Sum_probs=71.8

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCc
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGS   71 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~   71 (84)
                      +|.+.++++.. ++.|..+...|+++.|++++.. .+++||+++...         .+.|..+.|..+++++++++.||+
T Consensus        29 tG~C~rTiqh~-dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt  106 (311)
T KOG0315|consen   29 TGICSRTIQHP-DSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGT  106 (311)
T ss_pred             cCeEEEEEecC-ccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCce
Confidence            68999999887 9999999999999999887754 799999987655         578999999999999999999999


Q ss_pred             EEEEeCCCCeec
Q psy16880         72 ICMWNLNSKLCD   83 (84)
Q Consensus        72 i~~~~~~~~~~~   83 (84)
                      ++|||++...+.
T Consensus       107 ~kIWdlR~~~~q  118 (311)
T KOG0315|consen  107 VKIWDLRSLSCQ  118 (311)
T ss_pred             EEEEeccCcccc
Confidence            999999986554

>KOG0282|consensus

Probab=99.67  E-value=7.4e-17  Score=90.57  Aligned_cols=82  Identities=22%  Similarity=0.403  Sum_probs=75.6

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCC-CEEEEecCCCcEE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQ-RTLISGGDDGSIC   73 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~-~~~~~~~~~~~i~   73 (84)
                      ++++++++.+| ..+|..++|+.++..|++++.|+.+++||..++..      ...++++.|+|+. +.+++|+.|+.|+
T Consensus       247 ~~~~lrtf~gH-~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~  325 (503)
T KOG0282|consen  247 DRRCLRTFKGH-RKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIR  325 (503)
T ss_pred             Ccceehhhhcc-hhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEE
Confidence            37899999999 99999999999999999999999999999999877      6678999999987 8889999999999


Q ss_pred             EEeCCCCeec
Q psy16880         74 MWNLNSKLCD   83 (84)
Q Consensus        74 ~~~~~~~~~~   83 (84)
                      .||+++++.+
T Consensus       326 ~wDiRs~kvv  335 (503)
T KOG0282|consen  326 QWDIRSGKVV  335 (503)
T ss_pred             EEeccchHHH
Confidence            9999998754

>KOG0295|consensus

Probab=99.64  E-value=2.3e-15  Score=82.54  Aligned_cols=81  Identities=23%  Similarity=0.544  Sum_probs=70.5

Q ss_pred             ceEEEeccCCCcCEEEEEEccC---------------CCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCC
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSK---------------QHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQ   60 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~   60 (84)
                      ++...++.| +.+|.+++|-|.               ++.+.+++.|+.+++||+.++..       .+.|+.++|+|.|
T Consensus       268 ~~k~~lR~h-Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~G  346 (406)
T KOG0295|consen  268 QCKAELREH-EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGG  346 (406)
T ss_pred             hhhhhhhcc-ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCC
Confidence            345567788 999999999652               24889999999999999998877       7899999999999


Q ss_pred             CEEEEecCCCcEEEEeCCCCeecC
Q psy16880         61 RTLISGGDDGSICMWNLNSKLCDR   84 (84)
Q Consensus        61 ~~~~~~~~~~~i~~~~~~~~~~~~   84 (84)
                      ++++++..|+++++||+++++|.+
T Consensus       347 kyi~ScaDDktlrvwdl~~~~cmk  370 (406)
T KOG0295|consen  347 KYILSCADDKTLRVWDLKNLQCMK  370 (406)
T ss_pred             eEEEEEecCCcEEEEEeccceeee
Confidence            999999999999999999988753

>PTZ00420 coronin; Provisional

Probab=99.63  E-value=1.5e-14  Score=84.44  Aligned_cols=78  Identities=10%  Similarity=0.133  Sum_probs=67.1

Q ss_pred             EEEeccCCCcCEEEEEEccCCCE-EEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880          5 IHTFVHSNNSAVRSISFCSKQHT-LISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNL   77 (84)
Q Consensus         5 ~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (84)
                      +..+.+| ...|.+++|+|++.. +++++.|+.+++||+.....      ...|.+++|+|++..+++++.|+.+++||+
T Consensus       118 ~~~L~gH-~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~  196 (568)
T PTZ00420        118 QCILKGH-KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDP  196 (568)
T ss_pred             eEEeecC-CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEEC
Confidence            4456778 899999999998875 57899999999999987654      567999999999999999999999999999


Q ss_pred             CCCeec
Q psy16880         78 NSKLCD   83 (84)
Q Consensus        78 ~~~~~~   83 (84)
                      ++++.+
T Consensus       197 Rsg~~i  202 (568)
T PTZ00420        197 RKQEIA  202 (568)
T ss_pred             CCCcEE
Confidence            987653

>KOG0286|consensus

Probab=99.63  E-value=9.2e-15  Score=78.53  Aligned_cols=80  Identities=23%  Similarity=0.417  Sum_probs=72.2

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCc
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGS   71 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~   71 (84)
                      .|.++++|++| ++.|.+++|.|+|.-+++|+.|+.+++||++....         ...|..++|+..|+++..|..|..
T Consensus       218 ~~~c~qtF~gh-esDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~  296 (343)
T KOG0286|consen  218 SGQCVQTFEGH-ESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFT  296 (343)
T ss_pred             CcceeEeeccc-ccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCc
Confidence            36789999999 99999999999999999999999999999997655         568999999999999999999999


Q ss_pred             EEEEeCCCCe
Q psy16880         72 ICMWNLNSKL   81 (84)
Q Consensus        72 i~~~~~~~~~   81 (84)
                      +.+||.-.++
T Consensus       297 c~vWDtlk~e  306 (343)
T KOG0286|consen  297 CNVWDTLKGE  306 (343)
T ss_pred             eeEeeccccc
Confidence            9999975443

>KOG0265|consensus

Probab=99.63  E-value=7.8e-15  Score=78.92  Aligned_cols=80  Identities=21%  Similarity=0.345  Sum_probs=70.5

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      ++..+++| ++.|..+.|+|++.+|++|+.|..+.+|.......        .+.|..+.|.+++..+++++.|.++..|
T Consensus        39 p~m~l~gh-~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   39 PIMLLPGH-KGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW  117 (338)
T ss_pred             hhhhcCCC-cceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence            44556778 99999999999999999999999999999654433        6789999999999999999999999999


Q ss_pred             eCCCCeecC
Q psy16880         76 NLNSKLCDR   84 (84)
Q Consensus        76 ~~~~~~~~~   84 (84)
                      |.+++++++
T Consensus       118 D~~tG~~~r  126 (338)
T KOG0265|consen  118 DAETGKRIR  126 (338)
T ss_pred             ecccceeee
Confidence            999998764

>KOG0291|consensus

Probab=99.63  E-value=6.1e-15  Score=86.87  Aligned_cols=81  Identities=22%  Similarity=0.399  Sum_probs=73.6

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      +|+++-.+.+| +++|.+++|+|.+..|++++.|.++++||+-....       ...+..++|+|+|+.+++...||.|.
T Consensus       467 TGqllDiLsGH-EgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqIt  545 (893)
T KOG0291|consen  467 TGQLLDILSGH-EGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQIT  545 (893)
T ss_pred             cCeeeehhcCC-CCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEE
Confidence            68899999999 99999999999999999999999999999965532       77899999999999999999999999


Q ss_pred             EEeCCCCee
Q psy16880         74 MWNLNSKLC   82 (84)
Q Consensus        74 ~~~~~~~~~   82 (84)
                      +||...+..
T Consensus       546 f~d~~~~~q  554 (893)
T KOG0291|consen  546 FFDIKEAVQ  554 (893)
T ss_pred             EEEhhhcee
Confidence            999876543

>KOG0275|consensus

Probab=99.62  E-value=5e-16  Score=84.82  Aligned_cols=72  Identities=36%  Similarity=0.604  Sum_probs=66.3

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------------CCCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------------DSAVRSISFCSKQRTLISGGDDGSICMWNL   77 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (84)
                      ++.+.|-.|+|++++|++|+-||.+.+|+..+++.               ...|.|++|+.+..++++|+.||.|++|.+
T Consensus       213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri  292 (508)
T KOG0275|consen  213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI  292 (508)
T ss_pred             ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence            56678999999999999999999999999988766               678999999999999999999999999999


Q ss_pred             CCCeecC
Q psy16880         78 NSKLCDR   84 (84)
Q Consensus        78 ~~~~~~~   84 (84)
                      .++.|++
T Consensus       293 ~tG~ClR  299 (508)
T KOG0275|consen  293 ETGQCLR  299 (508)
T ss_pred             ecchHHH
Confidence            9998864

>KOG0284|consensus

Probab=99.61  E-value=1.1e-15  Score=84.78  Aligned_cols=77  Identities=21%  Similarity=0.474  Sum_probs=68.0

Q ss_pred             EeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880          7 TFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~   79 (84)
                      .++.||...|.+++|+|+-+.|++++.|+.+++||..-...       ...|.++.|+|....+++++.|+.+++||+++
T Consensus       174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS  253 (464)
T KOG0284|consen  174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS  253 (464)
T ss_pred             HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence            44556458899999999999999999999999999975544       56799999999999999999999999999999


Q ss_pred             Ceec
Q psy16880         80 KLCD   83 (84)
Q Consensus        80 ~~~~   83 (84)
                      +.|+
T Consensus       254 g~cl  257 (464)
T KOG0284|consen  254 GSCL  257 (464)
T ss_pred             cchh
Confidence            8875

>KOG0283|consensus

Probab=99.61  E-value=2.9e-15  Score=88.05  Aligned_cols=80  Identities=23%  Similarity=0.474  Sum_probs=70.6

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEcc-CCCEEEEecCCCcEEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCS-KQRTLISGGDDGSICM   74 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~-~~~~~~~~~~~~~i~~   74 (84)
                      .++++.+.+| .+.|+.++|+. ..+|++++.|.+++||++.....      ...|+|++|+| +.+++++|+-|+.++|
T Consensus       359 ekP~~ef~GH-t~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRi  436 (712)
T KOG0283|consen  359 EKPFCEFKGH-TADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRL  436 (712)
T ss_pred             ccchhhhhcc-chhheeccccc-CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEE
Confidence            4678889999 99999999985 66888999999999999976655      78899999999 6789999999999999


Q ss_pred             EeCCCCeec
Q psy16880         75 WNLNSKLCD   83 (84)
Q Consensus        75 ~~~~~~~~~   83 (84)
                      |++...+.+
T Consensus       437 WsI~d~~Vv  445 (712)
T KOG0283|consen  437 WSISDKKVV  445 (712)
T ss_pred             eecCcCeeE
Confidence            999877653

>PTZ00421 coronin; Provisional

Probab=99.61  E-value=3.8e-14  Score=81.91  Aligned_cols=75  Identities=19%  Similarity=0.412  Sum_probs=64.4

Q ss_pred             EeccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCC-------C-------CCCEEEEEEccCC-CEEEEecCCC
Q psy16880          7 TFVHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKL-------C-------DSAVRSISFCSKQ-RTLISGGDDG   70 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~-------~-------~~~v~~~~~~~~~-~~~~~~~~~~   70 (84)
                      .+.+| .+.|.+++|+| ++..|++++.|+.+++||+....       .       ...|.+++|+|.+ ..+++++.|+
T Consensus        70 ~l~GH-~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg  148 (493)
T PTZ00421         70 ILLGQ-EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM  148 (493)
T ss_pred             eEeCC-CCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence            35678 99999999999 78899999999999999996532       1       5679999999975 6899999999


Q ss_pred             cEEEEeCCCCee
Q psy16880         71 SICMWNLNSKLC   82 (84)
Q Consensus        71 ~i~~~~~~~~~~   82 (84)
                      .|++||+.+++.
T Consensus       149 tVrIWDl~tg~~  160 (493)
T PTZ00421        149 VVNVWDVERGKA  160 (493)
T ss_pred             EEEEEECCCCeE
Confidence            999999987764

>PTZ00420 coronin; Provisional

Probab=99.61  E-value=7.8e-14  Score=81.56  Aligned_cols=78  Identities=17%  Similarity=0.313  Sum_probs=65.7

Q ss_pred             eEEEeccCCCcCEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCC--------C-------CCCEEEEEEccCCCEE-EEe
Q psy16880          4 IIHTFVHSNNSAVRSISFCSK-QHTLISGGDDGSICMWNLNSKL--------C-------DSAVRSISFCSKQRTL-ISG   66 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~--------~-------~~~v~~~~~~~~~~~~-~~~   66 (84)
                      ++..+.+| .+.|.+++|+|+ +..|++|+.|+.+++||+....        .       ...|.+++|+|++..+ +++
T Consensus        66 ~v~~L~gH-~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg  144 (568)
T PTZ00420         66 PVIKLKGH-TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS  144 (568)
T ss_pred             eEEEEcCC-CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence            45678888 999999999996 7899999999999999996431        0       4679999999988654 688


Q ss_pred             cCCCcEEEEeCCCCee
Q psy16880         67 GDDGSICMWNLNSKLC   82 (84)
Q Consensus        67 ~~~~~i~~~~~~~~~~   82 (84)
                      +.|+.|++||+++++.
T Consensus       145 S~DgtIrIWDl~tg~~  160 (568)
T PTZ00420        145 GFDSFVNIWDIENEKR  160 (568)
T ss_pred             eCCCeEEEEECCCCcE
Confidence            8999999999987753

>KOG1407|consensus

Probab=99.60  E-value=7.3e-15  Score=77.96  Aligned_cols=80  Identities=21%  Similarity=0.372  Sum_probs=71.5

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      +++..++.| .....|++|+|+|++|++|+.|..+.+||+...-.       ..+|+.++|+-+++++++++.|..|-|=
T Consensus       180 kpv~si~AH-~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA  258 (313)
T KOG1407|consen  180 KPVQSIKAH-PSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIA  258 (313)
T ss_pred             ccccccccC-CcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeE
Confidence            567788888 88889999999999999999999999999986644       7899999999999999999999999988


Q ss_pred             eCCCCeec
Q psy16880         76 NLNSKLCD   83 (84)
Q Consensus        76 ~~~~~~~~   83 (84)
                      +++++..+
T Consensus       259 ~vetGd~~  266 (313)
T KOG1407|consen  259 EVETGDRV  266 (313)
T ss_pred             ecccCCeE
Confidence            88877643

>KOG0291|consensus

Probab=99.59  E-value=2.6e-14  Score=84.34  Aligned_cols=78  Identities=22%  Similarity=0.522  Sum_probs=69.2

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      .+...++| -..+.+++++|||+++++|+.|+.+++||...+.+       .+.|+.++|+..++.+++.+.||+++.||
T Consensus       342 YVlKQQgH-~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD  420 (893)
T KOG0291|consen  342 YVLKQQGH-SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD  420 (893)
T ss_pred             eeeecccc-ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence            44555777 89999999999999999999999999999988665       77899999999999999999999999999


Q ss_pred             CCCCee
Q psy16880         77 LNSKLC   82 (84)
Q Consensus        77 ~~~~~~   82 (84)
                      +.....
T Consensus       421 lkRYrN  426 (893)
T KOG0291|consen  421 LKRYRN  426 (893)
T ss_pred             ecccce
Confidence            865543

>KOG0285|consensus

Probab=99.58  E-value=1e-14  Score=80.32  Aligned_cols=79  Identities=20%  Similarity=0.491  Sum_probs=70.9

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      +.++.+.+| .+.|.+++.+|.-..+++++.|..+++||+++...       ...|..+.+.|....+++++.|++|++|
T Consensus       226 kvIR~YhGH-lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlW  304 (460)
T KOG0285|consen  226 KVIRHYHGH-LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLW  304 (460)
T ss_pred             hhHHHhccc-cceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEe
Confidence            456677888 99999999999999999999999999999998765       6789999999888889999999999999


Q ss_pred             eCCCCee
Q psy16880         76 NLNSKLC   82 (84)
Q Consensus        76 ~~~~~~~   82 (84)
                      |++.++.
T Consensus       305 Dl~agkt  311 (460)
T KOG0285|consen  305 DLRAGKT  311 (460)
T ss_pred             eeccCce
Confidence            9988764

>KOG0292|consensus

Probab=99.58  E-value=1e-14  Score=87.44  Aligned_cols=81  Identities=33%  Similarity=0.651  Sum_probs=74.0

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICM   74 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~   74 (84)
                      |.++..+..| +++|..++|+|++.+|++|+.|-.+++|.+.+...       -..|+.+.|++.-+++++++.|.+|++
T Consensus        41 ~tli~rFdeH-dGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrI  119 (1202)
T KOG0292|consen   41 GTLIDRFDEH-DGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRI  119 (1202)
T ss_pred             hhHHhhhhcc-CCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEE
Confidence            4456778889 99999999999999999999999999999988776       457999999999999999999999999


Q ss_pred             EeCCCCeec
Q psy16880         75 WNLNSKLCD   83 (84)
Q Consensus        75 ~~~~~~~~~   83 (84)
                      |+..+++++
T Consensus       120 WNwqsr~~i  128 (1202)
T KOG0292|consen  120 WNWQSRKCI  128 (1202)
T ss_pred             EeccCCceE
Confidence            999998876

>KOG0285|consensus

Probab=99.57  E-value=1.6e-14  Score=79.54  Aligned_cols=80  Identities=21%  Similarity=0.373  Sum_probs=72.0

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      +.+.+.+| .+.|.++++.|....|++|+.|+.+.+||+.++..       ...|..+++++..+++.+++.|+.++.||
T Consensus       143 l~rVi~gH-lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD  221 (460)
T KOG0285|consen  143 LYRVISGH-LGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD  221 (460)
T ss_pred             ehhhhhhc-cceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence            45667888 99999999999999999999999999999998876       45789999999999999999999999999


Q ss_pred             CCCCeecC
Q psy16880         77 LNSKLCDR   84 (84)
Q Consensus        77 ~~~~~~~~   84 (84)
                      +...+.++
T Consensus       222 Le~nkvIR  229 (460)
T KOG0285|consen  222 LEYNKVIR  229 (460)
T ss_pred             chhhhhHH
Confidence            99887653

>KOG0645|consensus

Probab=99.57  E-value=9.1e-14  Score=74.10  Aligned_cols=75  Identities=15%  Similarity=0.305  Sum_probs=67.5

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecCCCcE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGDDGSI   72 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~i   72 (84)
                      +++.++++| ++.|.+++|+++|.+|++++.|.++-+|.+.....          .+.|-.+.|+|....+++++.|++|
T Consensus        96 ecv~~lEGH-EnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTI  174 (312)
T KOG0645|consen   96 ECVATLEGH-ENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTI  174 (312)
T ss_pred             eEEeeeecc-ccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeE
Confidence            467889999 99999999999999999999999999999984433          5678899999999999999999999


Q ss_pred             EEEeCC
Q psy16880         73 CMWNLN   78 (84)
Q Consensus        73 ~~~~~~   78 (84)
                      ++|+-.
T Consensus       175 k~~~~~  180 (312)
T KOG0645|consen  175 KVYRDE  180 (312)
T ss_pred             EEEeec
Confidence            999754

>KOG0316|consensus

Probab=99.57  E-value=5.1e-14  Score=74.12  Aligned_cols=82  Identities=17%  Similarity=0.307  Sum_probs=66.9

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------------------------------
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------------------------------   47 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------------------------------   47 (84)
                      +|+.++.+++| .+.|..++|+.+...+++|+.|..+++||.+....                                 
T Consensus        90 TGkv~Rr~rgH-~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvR  168 (307)
T KOG0316|consen   90 TGKVDRRFRGH-LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVR  168 (307)
T ss_pred             cCeeeeecccc-cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEE
Confidence            68999999999 99999999999999999999999999999976543                                 


Q ss_pred             --------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         48 --------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        48 --------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                                    ..+|++++|++++...+.++.++++++.|-.+++.+
T Consensus       169 tydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL  218 (307)
T KOG0316|consen  169 TYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL  218 (307)
T ss_pred             EEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHH
Confidence                          456777777777777777777777777776666543

>KOG0264|consensus

Probab=99.57  E-value=7.1e-14  Score=78.05  Aligned_cols=74  Identities=20%  Similarity=0.480  Sum_probs=63.3

Q ss_pred             eEEEeccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCC-CEEEEecCCCcEE
Q psy16880          4 IIHTFVHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQ-RTLISGGDDGSIC   73 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~-~~~~~~~~~~~i~   73 (84)
                      +.+..+.| .+.|.|++|+| ++..|++|+.|++|.+||++....        +..|..+.|+|+. ..+++++.|+.+.
T Consensus       264 ~~~~~~ah-~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~  342 (422)
T KOG0264|consen  264 PSHSVKAH-SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLN  342 (422)
T ss_pred             Cccccccc-CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEE
Confidence            44455677 89999999999 567889999999999999987765        7789999999964 6778888999999


Q ss_pred             EEeCC
Q psy16880         74 MWNLN   78 (84)
Q Consensus        74 ~~~~~   78 (84)
                      +||+.
T Consensus       343 vWDls  347 (422)
T KOG0264|consen  343 VWDLS  347 (422)
T ss_pred             EEecc
Confidence            99985

>KOG0284|consensus

Probab=99.56  E-value=1.6e-14  Score=80.28  Aligned_cols=78  Identities=18%  Similarity=0.342  Sum_probs=70.7

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      ..+.+.+| .-.|.+++|+|...++++++.|..|++||.+++..       .+.|..+.|.|+++++++++.|..++++|
T Consensus       214 ee~vL~GH-gwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~D  292 (464)
T KOG0284|consen  214 EERVLRGH-GWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFD  292 (464)
T ss_pred             hhheeccC-CCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEe
Confidence            34566888 88899999999999999999999999999998877       78899999999999999999999999999


Q ss_pred             CCCCee
Q psy16880         77 LNSKLC   82 (84)
Q Consensus        77 ~~~~~~   82 (84)
                      +++.+.
T Consensus       293 iR~mkE  298 (464)
T KOG0284|consen  293 IRTMKE  298 (464)
T ss_pred             hhHhHH
Confidence            986553

>KOG1273|consensus

Probab=99.55  E-value=6.6e-14  Score=76.17  Aligned_cols=68  Identities=18%  Similarity=0.308  Sum_probs=62.5

Q ss_pred             EEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        16 v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      ..++.|++-|.+|+.|+.+|.+.+||..+...       -.+|++++|+++++.+++++.|..|.+||+..+.++
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l  100 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL  100 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce
Confidence            67999999999999999999999999988766       568999999999999999999999999999887654

>KOG4283|consensus

Probab=99.54  E-value=7.7e-14  Score=75.44  Aligned_cols=80  Identities=28%  Similarity=0.515  Sum_probs=70.0

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC----------------------CCCEEEEEEc
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQH-TLISGGDDGSICMWNLNSKLC----------------------DSAVRSISFC   57 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~----------------------~~~v~~~~~~   57 (84)
                      +|.+-+++.+| .+.|.++.|+|... .|++|+.|+.+++||++....                      .+.+.+++|.
T Consensus       177 SGs~sH~LsGH-r~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t  255 (397)
T KOG4283|consen  177 SGSFSHTLSGH-RDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT  255 (397)
T ss_pred             CCcceeeeccc-cCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence            57788999999 99999999999776 578999999999999986522                      5678999999


Q ss_pred             cCCCEEEEecCCCcEEEEeCCCCe
Q psy16880         58 SKQRTLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        58 ~~~~~~~~~~~~~~i~~~~~~~~~   81 (84)
                      .++..+++++.|..+++|+..++.
T Consensus       256 Sd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  256 SDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             ccchhhhhccCccceEEeecccCc
Confidence            999999999999999999987654

>KOG0643|consensus

Probab=99.53  E-value=4.7e-13  Score=71.50  Aligned_cols=80  Identities=24%  Similarity=0.405  Sum_probs=68.2

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------------------------------
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------------------------------   47 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------------------------------   47 (84)
                      .|+.+-++++| .+.|++++.+.+...+++|+.|..+++||..+++.                                 
T Consensus        41 nGerlGty~GH-tGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~  119 (327)
T KOG0643|consen   41 NGERLGTYDGH-TGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYT  119 (327)
T ss_pred             CCceeeeecCC-CceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcc
Confidence            47888999999 99999999999999999999999999999998866                                 


Q ss_pred             ---------------------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880         48 ---------------------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        48 ---------------------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (84)
                                                 .+.+...-|.|-+..+++|..+|.|..||.++++
T Consensus       120 ~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~  180 (327)
T KOG0643|consen  120 CFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK  180 (327)
T ss_pred             eEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc
Confidence                                       3456667777777788888888888888887764

>KOG0647|consensus

Probab=99.53  E-value=1.9e-13  Score=73.83  Aligned_cols=71  Identities=21%  Similarity=0.419  Sum_probs=63.2

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCC--EEEEecCCCcEEEEeCCCCeec
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQR--TLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      .++|++++|+.+|..+++|+.|+.+++||+.....      ...|..+.|-+...  .+++|+.|.+++.||++...++
T Consensus        72 ~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv  150 (347)
T KOG0647|consen   72 DGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPV  150 (347)
T ss_pred             CCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCee
Confidence            88999999999999999999999999999988766      67889999876554  8899999999999999976654

>KOG0283|consensus

Probab=99.53  E-value=1.8e-13  Score=80.78  Aligned_cols=78  Identities=17%  Similarity=0.389  Sum_probs=69.0

Q ss_pred             ceEEEeccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      .++..| .| .+-|+|++|+| |.++|++|+.|+.+++|++.....      +..|++++|.|+|...+.|+.+|.+++|
T Consensus       401 ~CL~~F-~H-ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY  478 (712)
T KOG0283|consen  401 ECLKVF-SH-NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFY  478 (712)
T ss_pred             ceeeEE-ec-CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEE
Confidence            455555 35 89999999999 789999999999999999987776      7789999999999999999999999999


Q ss_pred             eCCCCee
Q psy16880         76 NLNSKLC   82 (84)
Q Consensus        76 ~~~~~~~   82 (84)
                      +....+.
T Consensus       479 ~t~~lk~  485 (712)
T KOG0283|consen  479 DTEGLKL  485 (712)
T ss_pred             EccCCeE
Confidence            9887654

>KOG0276|consensus

Probab=99.53  E-value=9e-14  Score=80.92  Aligned_cols=80  Identities=26%  Similarity=0.472  Sum_probs=71.1

Q ss_pred             ceEEEeccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEcc--CCCEEEEecCCCcE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCS--KQRTLISGGDDGSI   72 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~--~~~~~~~~~~~~~i   72 (84)
                      .+.+++++| ..-|.+++|+| +.+.+++++.|+++++|.+....+       +..|.++.|-+  +.+++++++.|.++
T Consensus       131 a~~qtfeGH-~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~ti  209 (794)
T KOG0276|consen  131 ACEQTFEGH-EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTI  209 (794)
T ss_pred             eeeeEEcCc-ceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceE
Confidence            367899999 99999999999 789999999999999999976655       67899999976  45799999999999


Q ss_pred             EEEeCCCCeec
Q psy16880         73 CMWNLNSKLCD   83 (84)
Q Consensus        73 ~~~~~~~~~~~   83 (84)
                      ++||..++.|+
T Consensus       210 KvWDyQtk~CV  220 (794)
T KOG0276|consen  210 KVWDYQTKSCV  220 (794)
T ss_pred             EEeecchHHHH
Confidence            99999998776

>KOG0316|consensus

Probab=99.53  E-value=1.9e-13  Score=72.04  Aligned_cols=79  Identities=23%  Similarity=0.470  Sum_probs=73.0

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      .|.+++++.+| ...|...+.+.+...+++++.|..+.+||+.+++.       ..+|..++|..+...+++++.|..++
T Consensus        48 rg~liktYsgh-G~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r  126 (307)
T KOG0316|consen   48 RGALIKTYSGH-GHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVR  126 (307)
T ss_pred             ccceeeeecCC-CceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeE
Confidence            37789999999 99999999999999999999999999999999887       56899999999999999999999999


Q ss_pred             EEeCCCC
Q psy16880         74 MWNLNSK   80 (84)
Q Consensus        74 ~~~~~~~   80 (84)
                      +||.++.
T Consensus       127 ~wDCRS~  133 (307)
T KOG0316|consen  127 LWDCRSR  133 (307)
T ss_pred             EEEcccC
Confidence            9998754

>KOG0295|consensus

Probab=99.52  E-value=3.6e-13  Score=74.16  Aligned_cols=77  Identities=23%  Similarity=0.524  Sum_probs=70.8

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      +|.++.++.+| .+.|..++|+|.|++++++..|+++++||+++...       +.-+.++.|+.+..++++|+.|.+++
T Consensus       323 tg~cL~tL~gh-dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~K  401 (406)
T KOG0295|consen  323 TGMCLFTLVGH-DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVK  401 (406)
T ss_pred             CCeEEEEEecc-cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceee
Confidence            57899999999 99999999999999999999999999999998766       56689999999999999999999999


Q ss_pred             EEeCC
Q psy16880         74 MWNLN   78 (84)
Q Consensus        74 ~~~~~   78 (84)
                      +|..+
T Consensus       402 vwEcr  406 (406)
T KOG0295|consen  402 VWECR  406 (406)
T ss_pred             eeecC
Confidence            99753

>KOG0319|consensus

Probab=99.52  E-value=2.6e-13  Score=79.77  Aligned_cols=81  Identities=27%  Similarity=0.552  Sum_probs=74.0

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICM   74 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~   74 (84)
                      +.++..+.+| +-.|++++|++..+.+++++.|.++++|.+.+..+       ...|...+|-.+++.+++++.||.|++
T Consensus       495 ~~l~~vLsGH-~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKl  573 (775)
T KOG0319|consen  495 LRLLGVLSGH-TRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKL  573 (775)
T ss_pred             ceEEEEeeCC-ccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEE
Confidence            4567889999 99999999999999999999999999999988877       567888999999999999999999999


Q ss_pred             EeCCCCeec
Q psy16880         75 WNLNSKLCD   83 (84)
Q Consensus        75 ~~~~~~~~~   83 (84)
                      |+++++.|+
T Consensus       574 Wnikt~eC~  582 (775)
T KOG0319|consen  574 WNIKTNECE  582 (775)
T ss_pred             Eeccchhhh
Confidence            999998875

>KOG0273|consensus

Probab=99.52  E-value=2.1e-13  Score=77.00  Aligned_cols=80  Identities=23%  Similarity=0.501  Sum_probs=69.4

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------------------------------
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------------------------------   47 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------------------------------   47 (84)
                      |.++.++-.| .++|++++|+..|.++++++-|+...+||..++..                                  
T Consensus       266 G~l~~tl~~H-kgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~  344 (524)
T KOG0273|consen  266 GNLISTLGQH-KGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVC  344 (524)
T ss_pred             chhhhhhhcc-CCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEE
Confidence            5556667677 99999999999999999999999999999965533                                  


Q ss_pred             --------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880         48 --------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        48 --------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                                    .+.|.++.|.|.+..+++++.|+++++|......+
T Consensus       345 kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~  393 (524)
T KOG0273|consen  345 KVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS  393 (524)
T ss_pred             EecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc
Confidence                          57899999999999999999999999998765543

>KOG1446|consensus

Probab=99.52  E-value=4.9e-13  Score=72.22  Aligned_cols=78  Identities=22%  Similarity=0.325  Sum_probs=67.7

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      .+.++-+.|| ...|..++.+|-+..+++++.|..+++||++....     -..-...+|.|+|-.++.+.....|++||
T Consensus        90 NkylRYF~GH-~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD  168 (311)
T KOG1446|consen   90 NKYLRYFPGH-KKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYD  168 (311)
T ss_pred             CceEEEcCCC-CceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEE
Confidence            4678999999 99999999999999999999999999999996655     23345688999999999998888999999


Q ss_pred             CCCC
Q psy16880         77 LNSK   80 (84)
Q Consensus        77 ~~~~   80 (84)
                      ++.-
T Consensus       169 ~Rs~  172 (311)
T KOG1446|consen  169 LRSF  172 (311)
T ss_pred             eccc
Confidence            8753

>KOG0318|consensus

Probab=99.51  E-value=9.5e-13  Score=75.35  Aligned_cols=81  Identities=16%  Similarity=0.412  Sum_probs=71.2

Q ss_pred             CCceEEEec---cCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------------------------------
Q psy16880          1 DGSIIHTFV---HSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------------------------------   47 (84)
Q Consensus         1 ~g~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------------------------------   47 (84)
                      +|+.+-.++   .| ++.|++++|+|++..+++++.|..+++||+.+...                              
T Consensus       221 tge~vg~l~~~~aH-kGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~  299 (603)
T KOG0318|consen  221 TGEKVGELEDSDAH-KGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLS  299 (603)
T ss_pred             CccEEEEecCCCCc-cccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcC
Confidence            466777777   67 99999999999999999999999999999987654                              


Q ss_pred             --------------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880         48 --------------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        48 --------------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                                          ...|+++..+|++..+++++.||.|.-|+...+..
T Consensus       300 G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~  354 (603)
T KOG0318|consen  300 GTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS  354 (603)
T ss_pred             cEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc
Confidence                                56799999999999999999999999999876653

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.51  E-value=1.1e-12  Score=79.44  Aligned_cols=79  Identities=24%  Similarity=0.483  Sum_probs=67.6

Q ss_pred             CceEEEeccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEc-cCCCEEEEecCCCcEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFC-SKQRTLISGGDDGSIC   73 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~-~~~~~~~~~~~~~~i~   73 (84)
                      ++.+..+++| .+.|.+++|+| ++..|++++.|+.+++||+.....      ...+.++.|. +++..+++++.|+.|+
T Consensus       565 ~~~~~~~~~H-~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~  643 (793)
T PLN00181        565 SQLVTEMKEH-EKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVY  643 (793)
T ss_pred             CeEEEEecCC-CCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEE
Confidence            5667778888 99999999997 788999999999999999986544      4578889995 5789999999999999


Q ss_pred             EEeCCCCe
Q psy16880         74 MWNLNSKL   81 (84)
Q Consensus        74 ~~~~~~~~   81 (84)
                      +||+++.+
T Consensus       644 iwD~~~~~  651 (793)
T PLN00181        644 YYDLRNPK  651 (793)
T ss_pred             EEECCCCC
Confidence            99997653

>KOG0276|consensus

Probab=99.51  E-value=1.7e-13  Score=79.79  Aligned_cols=77  Identities=27%  Similarity=0.510  Sum_probs=68.6

Q ss_pred             eEEEeccCCCcCEEEEEEccCC--CEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQ--HTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICM   74 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~   74 (84)
                      +..++++| +..|.+++|.+.+  .++++|+.|..+++||+++..+       .+.|+.+.|+|.-+++++|+.||++++
T Consensus       175 ~nfTl~gH-ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvri  253 (794)
T KOG0276|consen  175 PNFTLEGH-EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRI  253 (794)
T ss_pred             Cceeeecc-ccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEE
Confidence            55788999 9999999999854  6999999999999999998766       568999999999999999999999999


Q ss_pred             EeCCCCe
Q psy16880         75 WNLNSKL   81 (84)
Q Consensus        75 ~~~~~~~   81 (84)
                      |...+-+
T Consensus       254 Whs~Ty~  260 (794)
T KOG0276|consen  254 WNSKTYK  260 (794)
T ss_pred             ecCccee
Confidence            9876644

>KOG2394|consensus

Probab=99.50  E-value=2.2e-13  Score=78.13  Aligned_cols=71  Identities=11%  Similarity=0.407  Sum_probs=64.3

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      ++.|..++|+|++++|++.+.|+.+++||..+...       -+...|++|+|+++++++|+.|..+.||.+..++.+
T Consensus       290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV  367 (636)
T KOG2394|consen  290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV  367 (636)
T ss_pred             cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEE
Confidence            56789999999999999999999999999987666       467899999999999999999999999999877754

>KOG0282|consensus

Probab=99.50  E-value=2.7e-14  Score=80.51  Aligned_cols=80  Identities=25%  Similarity=0.438  Sum_probs=71.6

Q ss_pred             ceEEEeccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      +.++.+.+| +..|.++.|.| .+.+|++++.|+.+.+|++-....        ...|..++|++++..+++++.|+.++
T Consensus       205 k~~~~~~gH-~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK  283 (503)
T KOG0282|consen  205 KLSHNLSGH-TKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK  283 (503)
T ss_pred             hheeeccCC-ccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence            356788899 99999999999 889999999999999999966322        67899999999999999999999999


Q ss_pred             EEeCCCCeec
Q psy16880         74 MWNLNSKLCD   83 (84)
Q Consensus        74 ~~~~~~~~~~   83 (84)
                      +||+++++++
T Consensus       284 lwDtETG~~~  293 (503)
T KOG0282|consen  284 LWDTETGQVL  293 (503)
T ss_pred             eeccccceEE
Confidence            9999999875

>KOG0302|consensus

Probab=99.50  E-value=1.4e-13  Score=76.17  Aligned_cols=73  Identities=30%  Similarity=0.566  Sum_probs=63.4

Q ss_pred             eccCCCcCEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880          8 FVHSNNSAVRSISFCSK-QHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSICMWNL   77 (84)
Q Consensus         8 ~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (84)
                      +-+| +..|..+.|+|. ...|++++.|+++++||++.++.         ++.|..++|+.+..++++|+.+|+++|||+
T Consensus       253 f~gH-~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDL  331 (440)
T KOG0302|consen  253 FTGH-TKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDL  331 (440)
T ss_pred             cccc-ccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEh
Confidence            3456 888999999995 56899999999999999998744         678999999998889999999999999999


Q ss_pred             CCCe
Q psy16880         78 NSKL   81 (84)
Q Consensus        78 ~~~~   81 (84)
                      +.-+
T Consensus       332 R~~~  335 (440)
T KOG0302|consen  332 RQFK  335 (440)
T ss_pred             hhcc
Confidence            8543

>KOG0269|consensus

Probab=99.49  E-value=2.6e-13  Score=80.18  Aligned_cols=74  Identities=20%  Similarity=0.464  Sum_probs=64.4

Q ss_pred             EeccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880          7 TFVHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSICMWNL   77 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (84)
                      ++.+. ...|..++|+| .+..|+++...|.+.+||++.+..        .+.|.++.|+|++.++++|++|+.++||+.
T Consensus       171 t~~~n-SESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~  249 (839)
T KOG0269|consen  171 TFRSN-SESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDM  249 (839)
T ss_pred             ccccc-chhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEec
Confidence            33443 56789999999 578999999999999999997766        889999999999999999999999999998


Q ss_pred             CCCe
Q psy16880         78 NSKL   81 (84)
Q Consensus        78 ~~~~   81 (84)
                      .+.+
T Consensus       250 t~~~  253 (839)
T KOG0269|consen  250 TDSR  253 (839)
T ss_pred             cCCC
Confidence            7544

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.49  E-value=8.5e-13  Score=70.01  Aligned_cols=76  Identities=25%  Similarity=0.486  Sum_probs=65.9

Q ss_pred             EEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880          5 IHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNL   77 (84)
Q Consensus         5 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (84)
                      ++.+++| .+.|.+++|+|+++.+++++.++.+.+|++.....       ...+..+.|.|++..+++++.++.+.+|+.
T Consensus         2 ~~~~~~h-~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~   80 (289)
T cd00200           2 RRTLKGH-TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL   80 (289)
T ss_pred             chHhccc-CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence            3456778 89999999999999999999999999999976543       456779999999989999999999999999


Q ss_pred             CCCe
Q psy16880         78 NSKL   81 (84)
Q Consensus        78 ~~~~   81 (84)
                      .+++
T Consensus        81 ~~~~   84 (289)
T cd00200          81 ETGE   84 (289)
T ss_pred             Cccc
Confidence            8743

>KOG0277|consensus

Probab=99.48  E-value=1.1e-12  Score=69.66  Aligned_cols=79  Identities=20%  Similarity=0.410  Sum_probs=68.3

Q ss_pred             CceEEEeccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEcc-CCCEEEEecCCCcE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCS-KQRTLISGGDDGSI   72 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~-~~~~~~~~~~~~~i   72 (84)
                      ++.++++.+| .+.|....|+| .+.++++++.|+.+++||++....       ..++.+..|+. +..++++++.|+.|
T Consensus       137 ~~Sv~Tf~gh-~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~v  215 (311)
T KOG0277|consen  137 PNSVQTFNGH-NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLV  215 (311)
T ss_pred             CcceEeecCC-ccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceE
Confidence            4568889999 99999999999 678999999999999999986644       55888999986 56788999999999


Q ss_pred             EEEeCCCCe
Q psy16880         73 CMWNLNSKL   81 (84)
Q Consensus        73 ~~~~~~~~~   81 (84)
                      +.||+++.+
T Consensus       216 r~wDir~~r  224 (311)
T KOG0277|consen  216 RGWDIRNLR  224 (311)
T ss_pred             EEEehhhcc
Confidence            999998754

>KOG1274|consensus

Probab=99.48  E-value=9.4e-13  Score=78.93  Aligned_cols=75  Identities=19%  Similarity=0.410  Sum_probs=65.3

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------------------------------------
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------------------------------------   47 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------------------------------------   47 (84)
                      -...+++| +++|.+++|+|.+.+|++.+.+|.+.+||+..+..                                    
T Consensus       130 ~~~~lrgh-~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~  208 (933)
T KOG1274|consen  130 QEKVLRGH-DAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV  208 (933)
T ss_pred             hheeeccc-CCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc
Confidence            34577888 99999999999999999999999999999986644                                    


Q ss_pred             -----------------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880         48 -----------------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus        48 -----------------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~   79 (84)
                                             ...++.++|+|+|+++++++.+|.|.|||..+
T Consensus       209 d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  209 DNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             CCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence                                   33478899999999999999999999998874

>KOG1034|consensus

Probab=99.48  E-value=2.3e-13  Score=74.24  Aligned_cols=78  Identities=26%  Similarity=0.541  Sum_probs=69.2

Q ss_pred             CceEEEeccCCCcCEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecCCC
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSK-QHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGDDG   70 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~   70 (84)
                      +++...+.+| ...|..++++|. .+++++++.|..+++|++++...          +..|..+.|++++..+++++.|.
T Consensus       125 ~~~~~~~~gh-G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDh  203 (385)
T KOG1034|consen  125 GQCSKNYRGH-GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDH  203 (385)
T ss_pred             hhhccceecc-CccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcc
Confidence            4556677888 899999999995 57999999999999999998766          67899999999999999999999


Q ss_pred             cEEEEeCCCC
Q psy16880         71 SICMWNLNSK   80 (84)
Q Consensus        71 ~i~~~~~~~~   80 (84)
                      .+++|+++.+
T Consensus       204 slk~W~l~~~  213 (385)
T KOG1034|consen  204 SLKLWRLNVK  213 (385)
T ss_pred             eEEEEecChh
Confidence            9999998743

>KOG1539|consensus

Probab=99.48  E-value=2.6e-13  Score=80.73  Aligned_cols=75  Identities=24%  Similarity=0.418  Sum_probs=67.5

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCC-CcEEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDD-GSICM   74 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~-~~i~~   74 (84)
                      .+.++.+.+| .+.|.+++|+|+|+.+++++.|+++++||+.++..      ...+..+.|+|++.++++...| .-|.+
T Consensus       566 ~kvvR~f~gh-~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIyl  644 (910)
T KOG1539|consen  566 RKVVREFWGH-GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYL  644 (910)
T ss_pred             hhhhHHhhcc-ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEE
Confidence            3567788999 99999999999999999999999999999998877      7888999999999999999887 56999


Q ss_pred             EeC
Q psy16880         75 WNL   77 (84)
Q Consensus        75 ~~~   77 (84)
                      |.-
T Consensus       645 WsN  647 (910)
T KOG1539|consen  645 WSN  647 (910)
T ss_pred             EEc
Confidence            953

>KOG0264|consensus

Probab=99.47  E-value=5e-13  Score=74.76  Aligned_cols=77  Identities=21%  Similarity=0.429  Sum_probs=65.2

Q ss_pred             eEEEeccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCC--CC-------CCCEEEEEEccC-CCEEEEecCCCcE
Q psy16880          4 IIHTFVHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSK--LC-------DSAVRSISFCSK-QRTLISGGDDGSI   72 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~--~~-------~~~v~~~~~~~~-~~~~~~~~~~~~i   72 (84)
                      +...+.+| .+.|..++|++ +..+|.+++.++.+.+||.+..  +.       .+.+.+++|.|. +..+++++.|+++
T Consensus       219 p~~~~~~h-~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV  297 (422)
T KOG0264|consen  219 PKTIFSGH-EDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTV  297 (422)
T ss_pred             ceEEeecC-CcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcE
Confidence            34566788 99999999999 5678999999999999999952  22       678999999994 5678899999999


Q ss_pred             EEEeCCCCe
Q psy16880         73 CMWNLNSKL   81 (84)
Q Consensus        73 ~~~~~~~~~   81 (84)
                      .+||+|+.+
T Consensus       298 ~LwDlRnL~  306 (422)
T KOG0264|consen  298 ALWDLRNLN  306 (422)
T ss_pred             EEeechhcc
Confidence            999998764

>KOG0973|consensus

Probab=99.47  E-value=7.5e-13  Score=80.01  Aligned_cols=79  Identities=23%  Similarity=0.355  Sum_probs=68.2

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------------------------CCCEEEEEEcc
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------------------------DSAVRSISFCS   58 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------------------------~~~v~~~~~~~   58 (84)
                      .+-++..| .+.|.|+.|+++|++|++|+.|+.+.+|+......                         .+.|..++|+|
T Consensus        61 ~l~~m~~h-~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp  139 (942)
T KOG0973|consen   61 HLCTMDDH-DGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP  139 (942)
T ss_pred             hheeeccc-cCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence            44566778 99999999999999999999999999999873100                         67899999999


Q ss_pred             CCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         59 KQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        59 ~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      ++.++++++.|+.|.+|+.++-+++
T Consensus       140 ~~~~lvS~s~DnsViiwn~~tF~~~  164 (942)
T KOG0973|consen  140 DDSLLVSVSLDNSVIIWNAKTFELL  164 (942)
T ss_pred             CccEEEEecccceEEEEccccceee
Confidence            9999999999999999998876543

>KOG0640|consensus

Probab=99.46  E-value=8e-13  Score=72.06  Aligned_cols=79  Identities=25%  Similarity=0.496  Sum_probs=70.6

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSICM   74 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i~~   74 (84)
                      .++++..| .++|.++.|+|....|++++.|+.+++||......         ...|.+++|+|.|.+++.+.....+++
T Consensus       164 vIRTlYDH-~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rl  242 (430)
T KOG0640|consen  164 VIRTLYDH-VDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRL  242 (430)
T ss_pred             eEeehhhc-cCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeE
Confidence            46778888 99999999999999999999999999999976544         458999999999999999998899999


Q ss_pred             EeCCCCeec
Q psy16880         75 WNLNSKLCD   83 (84)
Q Consensus        75 ~~~~~~~~~   83 (84)
                      ||+++-+|.
T Consensus       243 Ydv~T~Qcf  251 (430)
T KOG0640|consen  243 YDVNTYQCF  251 (430)
T ss_pred             EeccceeEe
Confidence            999987763

>KOG0293|consensus

Probab=99.46  E-value=1.1e-12  Score=73.60  Aligned_cols=76  Identities=22%  Similarity=0.496  Sum_probs=68.4

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSICM   74 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~   74 (84)
                      ++.+++.+| ..+|..+.|+|+.+++++++.+..+.+||..++..        ...+.+.+|.|++..+++|+.|+.|.+
T Consensus       260 kl~~tlvgh-~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~  338 (519)
T KOG0293|consen  260 KLKKTLVGH-SQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIM  338 (519)
T ss_pred             eeeeeeecc-cCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEE
Confidence            356788899 89999999999999999999999999999998866        357899999999999999999999999


Q ss_pred             EeCCC
Q psy16880         75 WNLNS   79 (84)
Q Consensus        75 ~~~~~   79 (84)
                      ||+..
T Consensus       339 wdlDg  343 (519)
T KOG0293|consen  339 WDLDG  343 (519)
T ss_pred             ecCCc
Confidence            99764

>KOG0275|consensus

Probab=99.46  E-value=1.1e-13  Score=75.92  Aligned_cols=83  Identities=23%  Similarity=0.467  Sum_probs=73.5

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      +|+|++.++..|...|.++.|+.+++.+++++.|..+++.-+..++.       .+.|....|.++|..+++++.|++++
T Consensus       294 tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvk  373 (508)
T KOG0275|consen  294 TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVK  373 (508)
T ss_pred             cchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEE
Confidence            57788888743389999999999999999999999999998887766       56789999999999999999999999


Q ss_pred             EEeCCCCeec
Q psy16880         74 MWNLNSKLCD   83 (84)
Q Consensus        74 ~~~~~~~~~~   83 (84)
                      +|+..+.+|+
T Consensus       374 vW~~KtteC~  383 (508)
T KOG0275|consen  374 VWHGKTTECL  383 (508)
T ss_pred             EecCcchhhh
Confidence            9999887765

>KOG0313|consensus

Probab=99.46  E-value=1.3e-12  Score=72.30  Aligned_cols=78  Identities=21%  Similarity=0.344  Sum_probs=70.3

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      +.++-.+++| ..+|.++-|++ ...+++++.|..++.||+..+..      +....++.++|....+++++.|..+++|
T Consensus       250 r~P~vtl~GH-t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~  327 (423)
T KOG0313|consen  250 RTPLVTLEGH-TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLW  327 (423)
T ss_pred             cCceEEeccc-ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeec
Confidence            4577889999 99999999997 77889999999999999988766      6789999999999999999999999999


Q ss_pred             eCCCCe
Q psy16880         76 NLNSKL   81 (84)
Q Consensus        76 ~~~~~~   81 (84)
                      |++++.
T Consensus       328 DPR~~~  333 (423)
T KOG0313|consen  328 DPRTGD  333 (423)
T ss_pred             CCCCCC
Confidence            998753

>KOG0645|consensus

Probab=99.46  E-value=4.1e-12  Score=67.96  Aligned_cols=74  Identities=22%  Similarity=0.398  Sum_probs=65.1

Q ss_pred             eEEEeccCCCcCEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC-----------CCCEEEEEEccCCCEEEEecCCCc
Q psy16880          4 IIHTFVHSNNSAVRSISFCSK-QHTLISGGDDGSICMWNLNSKLC-----------DSAVRSISFCSKQRTLISGGDDGS   71 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~   71 (84)
                      .++.+++| ++.+..++|+|. |..|++++.|..+++|+...+..           ...|+.++|+|.++++++++.|.+
T Consensus         6 ~~~~~~gh-~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t   84 (312)
T KOG0645|consen    6 LEQKLSGH-KDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT   84 (312)
T ss_pred             eEEeecCC-CCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence            45678888 999999999997 88999999999999999975222           568999999999999999999999


Q ss_pred             EEEEeCC
Q psy16880         72 ICMWNLN   78 (84)
Q Consensus        72 i~~~~~~   78 (84)
                      .-+|.-.
T Consensus        85 ~~Iw~k~   91 (312)
T KOG0645|consen   85 VVIWKKE   91 (312)
T ss_pred             EEEeecC
Confidence            9999654

>KOG0265|consensus

Probab=99.45  E-value=7.1e-13  Score=71.55  Aligned_cols=81  Identities=26%  Similarity=0.471  Sum_probs=69.3

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      +|+..+.+++| .+.|..+.-...+ .++.+++.|+++++||++....      +-+++++.|...+..+.+++-|+.|+
T Consensus       121 tG~~~rk~k~h-~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ik  199 (338)
T KOG0265|consen  121 TGKRIRKHKGH-TSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIK  199 (338)
T ss_pred             cceeeehhccc-cceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCcee
Confidence            58889999999 9999998755544 5778999999999999996554      55799999999999999999999999


Q ss_pred             EEeCCCCee
Q psy16880         74 MWNLNSKLC   82 (84)
Q Consensus        74 ~~~~~~~~~   82 (84)
                      +||++....
T Consensus       200 vWd~r~~d~  208 (338)
T KOG0265|consen  200 VWDLRKNDG  208 (338)
T ss_pred             eeccccCcc
Confidence            999976654

>KOG0278|consensus

Probab=99.45  E-value=1.5e-12  Score=69.27  Aligned_cols=34  Identities=24%  Similarity=0.482  Sum_probs=29.7

Q ss_pred             CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880         48 DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        48 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (84)
                      .++|.++.|+|+|...++|+.||+|++|....++
T Consensus       267 ~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  267 FGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             CCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence            4679999999999999999999999999876554

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.44  E-value=1.2e-11  Score=65.59  Aligned_cols=80  Identities=29%  Similarity=0.623  Sum_probs=67.4

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICM   74 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~   74 (84)
                      ++....+..| ...+.+++|+|++.++++++.++.+.+||++....       ...+.++.|+|++..+++++.++.+.+
T Consensus       125 ~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i  203 (289)
T cd00200         125 GKCLTTLRGH-TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL  203 (289)
T ss_pred             cEEEEEeccC-CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEE
Confidence            4556666667 88899999999988998888899999999975544       457999999999988988888999999


Q ss_pred             EeCCCCee
Q psy16880         75 WNLNSKLC   82 (84)
Q Consensus        75 ~~~~~~~~   82 (84)
                      ||++.++.
T Consensus       204 ~d~~~~~~  211 (289)
T cd00200         204 WDLSTGKC  211 (289)
T ss_pred             EECCCCce
Confidence            99986554

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.44  E-value=1e-12  Score=51.74  Aligned_cols=39  Identities=33%  Similarity=0.669  Sum_probs=37.0

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEe
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWN   41 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d   41 (84)
                      |++++++++| .+.|.+|+|+|++..+++++.|+.+++||
T Consensus         1 g~~~~~~~~h-~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGH-SSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESS-SSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCC-CCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            5788999999 99999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0319|consensus

Probab=99.44  E-value=9.8e-13  Score=77.45  Aligned_cols=75  Identities=15%  Similarity=0.417  Sum_probs=67.4

Q ss_pred             ccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880          9 VHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus         9 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (84)
                      ..| ...|.+++++|+.+++++|+.|...++|++.....       ...+.++.|+|....+++++.|.++++|.+.+..
T Consensus       460 ~aH-dKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS  538 (775)
T KOG0319|consen  460 RAH-DKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS  538 (775)
T ss_pred             Hhh-cccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccce
Confidence            346 88999999999999999999999999999985544       6789999999999999999999999999999887


Q ss_pred             ecC
Q psy16880         82 CDR   84 (84)
Q Consensus        82 ~~~   84 (84)
                      |++
T Consensus       539 Clk  541 (775)
T KOG0319|consen  539 CLK  541 (775)
T ss_pred             eee
Confidence            753

>KOG0647|consensus

Probab=99.43  E-value=2.4e-12  Score=69.64  Aligned_cols=70  Identities=21%  Similarity=0.505  Sum_probs=61.2

Q ss_pred             CcCEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880         13 NSAVRSISFCSK-QHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        13 ~~~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                      .+.|.+++|+|. ..++++++.|+.|++|++.....         .++|.+++|+.++..+++++.|+.+++||+.+++.
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~  106 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV  106 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe
Confidence            567999999994 45677999999999999976322         78999999999999999999999999999998865

>KOG0289|consensus

Probab=99.43  E-value=2.2e-12  Score=72.59  Aligned_cols=67  Identities=28%  Similarity=0.511  Sum_probs=61.1

Q ss_pred             CEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880         15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (84)
                      .+.+..|+|||-.|.+|..|+.+++||+..+..       .+.|..++|+.+|.++++.+.|+.+++||++..+
T Consensus       349 ~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~  422 (506)
T KOG0289|consen  349 EYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK  422 (506)
T ss_pred             eeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc
Confidence            378999999999999999999999999986655       7789999999999999999999999999998654

>KOG0772|consensus

Probab=99.43  E-value=3.8e-13  Score=76.96  Aligned_cols=67  Identities=28%  Similarity=0.467  Sum_probs=59.4

Q ss_pred             CEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880         15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (84)
                      ++..++|++++..+++|..||+|.+|+......            ...|+++.|+++++.+++-+.|+.+++||++..+
T Consensus       319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK  397 (641)
T ss_pred             CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence            467889999999999999999999999754433            5589999999999999999999999999998654

>KOG0640|consensus

Probab=99.42  E-value=2.2e-12  Score=70.37  Aligned_cols=73  Identities=22%  Similarity=0.494  Sum_probs=66.2

Q ss_pred             cCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCC
Q psy16880         10 HSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSK   80 (84)
Q Consensus        10 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   80 (84)
                      +| .+.|.++.+++.+++.++++.||.+++||--...+         ...|+...|..+++++++.+.|..+++|.+.++
T Consensus       259 qh-t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~  337 (430)
T KOG0640|consen  259 QH-TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG  337 (430)
T ss_pred             cc-ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence            45 88999999999999999999999999999866554         678999999999999999999999999999988


Q ss_pred             eec
Q psy16880         81 LCD   83 (84)
Q Consensus        81 ~~~   83 (84)
                      .++
T Consensus       338 R~l  340 (430)
T KOG0640|consen  338 RML  340 (430)
T ss_pred             ceE
Confidence            765

>KOG0313|consensus

Probab=99.42  E-value=1.5e-12  Score=72.07  Aligned_cols=78  Identities=24%  Similarity=0.462  Sum_probs=64.8

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCC-CEEEEecCCC
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQ-RTLISGGDDG   70 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~-~~~~~~~~~~   70 (84)
                      |....++.+  ...+++++++|...++++|+.+..+++||.+++..          .+.|..+.|+|.. .++++++.|+
T Consensus       291 g~~~~~~~~--~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~  368 (423)
T KOG0313|consen  291 GGLKSTLTT--NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN  368 (423)
T ss_pred             ccceeeeec--CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence            344444444  56789999999999999999999999999987754          6689999999954 5778999999


Q ss_pred             cEEEEeCCCCe
Q psy16880         71 SICMWNLNSKL   81 (84)
Q Consensus        71 ~i~~~~~~~~~   81 (84)
                      ++++||+++.+
T Consensus       369 t~klWDvRS~k  379 (423)
T KOG0313|consen  369 TVKLWDVRSTK  379 (423)
T ss_pred             eEEEEEeccCC
Confidence            99999998765

>KOG0641|consensus

Probab=99.42  E-value=6e-12  Score=66.36  Aligned_cols=81  Identities=22%  Similarity=0.401  Sum_probs=71.0

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------------CCCEEEEEEccCCCEEEEe
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------------DSAVRSISFCSKQRTLISG   66 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------------~~~v~~~~~~~~~~~~~~~   66 (84)
                      +|+..+.+.+| ++.|.++ ++-++.++++|+.|..+++||++....              .+.|..++..|.++.++++
T Consensus       172 ~g~~~~a~sgh-tghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg  249 (350)
T KOG0641|consen  172 RGQGFHALSGH-TGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASG  249 (350)
T ss_pred             CCCcceeecCC-cccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeec
Confidence            47788899999 9999887 556899999999999999999986654              4679999999999999999


Q ss_pred             cCCCcEEEEeCCCCeec
Q psy16880         67 GDDGSICMWNLNSKLCD   83 (84)
Q Consensus        67 ~~~~~i~~~~~~~~~~~   83 (84)
                      -.|....+||++.+..+
T Consensus       250 ~~dssc~lydirg~r~i  266 (350)
T KOG0641|consen  250 HADSSCMLYDIRGGRMI  266 (350)
T ss_pred             cCCCceEEEEeeCCcee
Confidence            99999999999987765

>KOG1446|consensus

Probab=99.41  E-value=7.2e-12  Score=67.82  Aligned_cols=77  Identities=26%  Similarity=0.472  Sum_probs=66.6

Q ss_pred             EEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------------------------------------
Q psy16880          6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------------------------------------   47 (84)
Q Consensus         6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------------------------------------   47 (84)
                      +.++.. .+.|.++.|+++|..+++++.|-.+.+||...+..                                      
T Consensus         8 k~f~~~-~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs   86 (311)
T KOG1446|consen    8 KVFRET-NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS   86 (311)
T ss_pred             cccccC-CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence            344444 67899999999999999999999999999987654                                      


Q ss_pred             -------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         48 -------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        48 -------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                                   ...|..++.+|-+..+++++.|++|++||++..+|+
T Consensus        87 l~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cq  135 (311)
T KOG1446|consen   87 LHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQ  135 (311)
T ss_pred             eecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCc
Confidence                         567999999998899999999999999999977664

>KOG0302|consensus

Probab=99.41  E-value=5e-12  Score=70.16  Aligned_cols=69  Identities=30%  Similarity=0.648  Sum_probs=60.2

Q ss_pred             ccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCC-CEEEEecCCCcEEEEeC
Q psy16880          9 VHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQ-RTLISGGDDGSICMWNL   77 (84)
Q Consensus         9 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~-~~~~~~~~~~~i~~~~~   77 (84)
                      ..| .+.|..++|+..-.+|++|+.+|.+.+||++..+.          ..+|+++.|+|.. ..+++++.|+.|.+||+
T Consensus       299 kAh-~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl  377 (440)
T KOG0302|consen  299 KAH-NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL  377 (440)
T ss_pred             ecc-CCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence            456 88999999999888999999999999999986654          7899999999954 56778888999999997


Q ss_pred             C
Q psy16880         78 N   78 (84)
Q Consensus        78 ~   78 (84)
                      .
T Consensus       378 s  378 (440)
T KOG0302|consen  378 S  378 (440)
T ss_pred             e
Confidence            5

>KOG0292|consensus

Probab=99.41  E-value=2.9e-12  Score=77.34  Aligned_cols=77  Identities=23%  Similarity=0.466  Sum_probs=69.5

Q ss_pred             EEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880          6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus         6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      +.+++| +-.|...+|+|.-..+++|+.|+.+++|.++..+.         .+.|+++-|+|....+++.+.|+.|++||
T Consensus       200 ~VLEGH-DRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD  278 (1202)
T KOG0292|consen  200 HVLEGH-DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD  278 (1202)
T ss_pred             eeeccc-ccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence            467888 88899999999999999999999999999987665         67899999999999999999999999999


Q ss_pred             CCCCeec
Q psy16880         77 LNSKLCD   83 (84)
Q Consensus        77 ~~~~~~~   83 (84)
                      +..+..+
T Consensus       279 m~kRt~v  285 (1202)
T KOG0292|consen  279 MTKRTSV  285 (1202)
T ss_pred             cccccce
Confidence            9876654

>KOG0296|consensus

Probab=99.41  E-value=8.8e-12  Score=68.81  Aligned_cols=79  Identities=23%  Similarity=0.455  Sum_probs=66.8

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      ....+.+. -+.+.-|.|+|.+..|++|+.||.+-+|.+.....       ..++++=.|.|+|+.++++..|++|++|+
T Consensus       140 ~~~~~~~e-~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn  218 (399)
T KOG0296|consen  140 EQWKLDQE-VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWN  218 (399)
T ss_pred             eEEEeecc-cCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEe
Confidence            34444433 56788999999999999999999999999987433       56788888999999999999999999999


Q ss_pred             CCCCeec
Q psy16880         77 LNSKLCD   83 (84)
Q Consensus        77 ~~~~~~~   83 (84)
                      +.++.++
T Consensus       219 ~ktg~p~  225 (399)
T KOG0296|consen  219 PKTGQPL  225 (399)
T ss_pred             cCCCcee
Confidence            9998765

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.40  E-value=1.7e-11  Score=63.70  Aligned_cols=71  Identities=14%  Similarity=0.353  Sum_probs=56.8

Q ss_pred             CcCEEEEEEccCCCEEE--EeCCCCcEEEEeCCCCCC----CCCEEEEEEccCCCEEEEecCC---CcEEEEeCCCCeec
Q psy16880         13 NSAVRSISFCSKQHTLI--SGGDDGSICMWNLNSKLC----DSAVRSISFCSKQRTLISGGDD---GSICMWNLNSKLCD   83 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~--~~~~~~~~~~~d~~~~~~----~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~   83 (84)
                      .++|.+++|+|++..|+  .|..+..+.+||++....    ...+..+.|+|+|+++++++.+   |.+.+||.++.+.+
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i  138 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI  138 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe
Confidence            45799999999998764  345667999999974433    5677889999999999988754   56999999987765

>KOG0643|consensus

Probab=99.40  E-value=5.5e-12  Score=67.52  Aligned_cols=81  Identities=17%  Similarity=0.295  Sum_probs=71.8

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSICM   74 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~   74 (84)
                      .++..+..+ .+.+..+-|.|.+..+++|..++.+..||++++..        ...|..++++++..++++++.|.+-++
T Consensus       138 ep~~kI~t~-~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl  216 (327)
T KOG0643|consen  138 EPYLKIPTP-DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKL  216 (327)
T ss_pred             CceEEecCC-ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcccee
Confidence            456777777 78889999999999999999999999999998654        668999999999999999999999999


Q ss_pred             EeCCCCeecC
Q psy16880         75 WNLNSKLCDR   84 (84)
Q Consensus        75 ~~~~~~~~~~   84 (84)
                      ||..+-.+++
T Consensus       217 ~D~~tl~v~K  226 (327)
T KOG0643|consen  217 VDVRTLEVLK  226 (327)
T ss_pred             eeccceeeEE
Confidence            9998876653

>KOG1539|consensus

Probab=99.39  E-value=1.1e-11  Score=74.11  Aligned_cols=81  Identities=23%  Similarity=0.445  Sum_probs=69.7

Q ss_pred             CceEEEe---ccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------------------------------
Q psy16880          2 GSIIHTF---VHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------------------------------   47 (84)
Q Consensus         2 g~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------------------------------   47 (84)
                      |.....+   +.| .++|..++....++.+++++.+|.+.+||......                               
T Consensus       480 Gi~r~sf~~~~ah-~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I  558 (910)
T KOG1539|consen  480 GIHRKSFGDSPAH-KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSI  558 (910)
T ss_pred             CeeecccccCccc-cCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeE
Confidence            3444455   346 88999999988889999999999999999976642                               


Q ss_pred             -----------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         48 -----------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        48 -----------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                                       .+.|+.++|+|+|+++++++.|++|++||+.++.++
T Consensus       559 ~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI  611 (910)
T KOG1539|consen  559 RVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI  611 (910)
T ss_pred             EEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee
Confidence                             678999999999999999999999999999998765

>KOG2110|consensus

Probab=99.39  E-value=1.6e-11  Score=67.91  Aligned_cols=76  Identities=13%  Similarity=0.321  Sum_probs=65.8

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCc-EEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGS-ICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSI   72 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i   72 (84)
                      +++..+..| ++.+-+++|+++|.++++++..|. ++++++..+..         ...|+.++|+|++.++.+.+..++|
T Consensus       164 ~~v~~I~aH-~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTV  242 (391)
T KOG2110|consen  164 QPVNTINAH-KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETV  242 (391)
T ss_pred             eeeeEEEec-CCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeE
Confidence            456677888 999999999999999999999995 56999977665         4578999999999999999999999


Q ss_pred             EEEeCCC
Q psy16880         73 CMWNLNS   79 (84)
Q Consensus        73 ~~~~~~~   79 (84)
                      ++|.+..
T Consensus       243 HiFKL~~  249 (391)
T KOG2110|consen  243 HIFKLEK  249 (391)
T ss_pred             EEEEecc
Confidence            9997754

>KOG0296|consensus

Probab=99.39  E-value=2.3e-11  Score=67.20  Aligned_cols=78  Identities=19%  Similarity=0.409  Sum_probs=69.8

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      +|.....+.+| +..|.++.|+.++.+|++|..+|.+.+|+..++..       -..+..+.|+|.+..++.|+.||.+-
T Consensus        95 ~ge~~~eltgH-KDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvW  173 (399)
T KOG0296|consen   95 TGEFAGELTGH-KDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVW  173 (399)
T ss_pred             CCcceeEecCC-CCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEE
Confidence            35566778889 99999999999999999999999999999987765       45688899999999999999999999


Q ss_pred             EEeCCC
Q psy16880         74 MWNLNS   79 (84)
Q Consensus        74 ~~~~~~   79 (84)
                      +|.+.+
T Consensus       174 mw~ip~  179 (399)
T KOG0296|consen  174 MWQIPS  179 (399)
T ss_pred             EEECCC
Confidence            999887

>KOG0268|consensus

Probab=99.39  E-value=1.7e-12  Score=71.70  Aligned_cols=77  Identities=23%  Similarity=0.434  Sum_probs=68.5

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSICM   74 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~   74 (84)
                      .++..+.+| .+.|.+++|+|.|+-+++|+.|.++++|..+....        -+.|.++.|+-+.+++++|+.|+.+++
T Consensus       263 ~p~~v~~dh-vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRl  341 (433)
T KOG0268|consen  263 RPLNVHKDH-VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRL  341 (433)
T ss_pred             ccchhhccc-ceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceee
Confidence            356667788 99999999999999999999999999999987765        568999999999999999999999999


Q ss_pred             EeCCCC
Q psy16880         75 WNLNSK   80 (84)
Q Consensus        75 ~~~~~~   80 (84)
                      |..+..
T Consensus       342 Wka~As  347 (433)
T KOG0268|consen  342 WKAKAS  347 (433)
T ss_pred             eecchh
Confidence            976543

>KOG0305|consensus

Probab=99.39  E-value=4.4e-12  Score=72.83  Aligned_cols=75  Identities=25%  Similarity=0.470  Sum_probs=63.4

Q ss_pred             eccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccC-CCEEEEec--CCCcEEEEeC
Q psy16880          8 FVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSK-QRTLISGG--DDGSICMWNL   77 (84)
Q Consensus         8 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~-~~~~~~~~--~~~~i~~~~~   77 (84)
                      +.+| ...|..++|++++..+++|++|..+.+||.....+       ...|-+++|+|- ...+++|+  .|+.|++||.
T Consensus       297 ~~~H-~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~  375 (484)
T KOG0305|consen  297 LQGH-RQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNT  375 (484)
T ss_pred             hhcc-cceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEc
Confidence            5567 88999999999999999999999999999955544       678999999994 45666654  4899999999


Q ss_pred             CCCeec
Q psy16880         78 NSKLCD   83 (84)
Q Consensus        78 ~~~~~~   83 (84)
                      .+++.+
T Consensus       376 ~~g~~i  381 (484)
T KOG0305|consen  376 NTGARI  381 (484)
T ss_pred             CCCcEe
Confidence            988765

>KOG2111|consensus

Probab=99.38  E-value=1.7e-11  Score=66.70  Aligned_cols=72  Identities=13%  Similarity=0.302  Sum_probs=64.1

Q ss_pred             EeccCCCcCEEEEEEccCCCEEEEeCCCCc-EEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880          7 TFVHSNNSAVRSISFCSKQHTLISGGDDGS-ICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      .+..| ++.|.|++.+.+|.++++++..|+ +++||..++..         ...|++++|+|+..++++.+..|+++++.
T Consensus       176 ~I~AH-~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~  254 (346)
T KOG2111|consen  176 IINAH-DSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS  254 (346)
T ss_pred             EEEcc-cCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence            45667 999999999999999999999995 57999987765         66899999999999999999999999998


Q ss_pred             CCC
Q psy16880         77 LNS   79 (84)
Q Consensus        77 ~~~   79 (84)
                      ++.
T Consensus       255 l~~  257 (346)
T KOG2111|consen  255 LRD  257 (346)
T ss_pred             eec
Confidence            765

>KOG0310|consensus

Probab=99.38  E-value=1.8e-12  Score=73.33  Aligned_cols=75  Identities=21%  Similarity=0.479  Sum_probs=64.3

Q ss_pred             EEEeccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccC-CCEEEEecCCCcEEEE
Q psy16880          5 IHTFVHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSK-QRTLISGGDDGSICMW   75 (84)
Q Consensus         5 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~-~~~~~~~~~~~~i~~~   75 (84)
                      ++.+..| +.++..+.|+| ++..|++|+.|..+..||+.+...       ...|++.+|+|. ..++++|+.||+|++|
T Consensus       103 LR~~~ah-~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~  181 (487)
T KOG0310|consen  103 LRQLYAH-QAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW  181 (487)
T ss_pred             HHHHhhc-cCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence            3456778 99999999999 556888999999999999987755       678999999984 5689999999999999


Q ss_pred             eCCCC
Q psy16880         76 NLNSK   80 (84)
Q Consensus        76 ~~~~~   80 (84)
                      |.+..
T Consensus       182 DtR~~  186 (487)
T KOG0310|consen  182 DTRSL  186 (487)
T ss_pred             EeccC
Confidence            99865

>KOG0303|consensus

Probab=99.38  E-value=4.2e-12  Score=70.86  Aligned_cols=80  Identities=16%  Similarity=0.268  Sum_probs=71.8

Q ss_pred             ceEEEeccCCCcCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      +++..+.+| ...|.-+.|+|.. ..|++++.|..+.+|++.++..      ...|.+++|+.+|..+++.+.|..|++|
T Consensus       122 epvv~L~gH-~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~  200 (472)
T KOG0303|consen  122 EPVVELYGH-QRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVI  200 (472)
T ss_pred             cceEEEeec-ceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEE
Confidence            457788899 9999999999964 6889999999999999988765      6789999999999999999999999999


Q ss_pred             eCCCCeec
Q psy16880         76 NLNSKLCD   83 (84)
Q Consensus        76 ~~~~~~~~   83 (84)
                      |.++++.+
T Consensus       201 dpr~~~~v  208 (472)
T KOG0303|consen  201 DPRRGTVV  208 (472)
T ss_pred             cCCCCcEe
Confidence            99988764

>KOG0646|consensus

Probab=99.38  E-value=1.8e-12  Score=73.11  Aligned_cols=42  Identities=19%  Similarity=0.569  Sum_probs=30.2

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCC
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLN   43 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~   43 (84)
                      +|.++..+..| --.|.++.|+-++.++++|+.|+.|.+|++.
T Consensus       112 sG~LL~v~~aH-YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~  153 (476)
T KOG0646|consen  112 SGILLNVLSAH-YQSITCLKFSDDGSHIITGSKDGAVLVWLLT  153 (476)
T ss_pred             cccHHHHHHhh-ccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence            35555555566 6677888888888888888888888888653

>KOG1445|consensus

Probab=99.37  E-value=1.5e-12  Score=76.49  Aligned_cols=77  Identities=16%  Similarity=0.290  Sum_probs=67.2

Q ss_pred             eEEEeccCCCcCEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          4 IIHTFVHSNNSAVRSISFCSK-QHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      +...+..| ...|.++.|+|- ...|++++.|..+.+||+.+...       ..+|..++|+|+|+.+++++.|+++++|
T Consensus       669 Pe~~lt~h-~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy  747 (1012)
T KOG1445|consen  669 PEKILTIH-GEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVY  747 (1012)
T ss_pred             cceeeecc-cceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEe
Confidence            34456677 889999999994 56889999999999999987755       6789999999999999999999999999


Q ss_pred             eCCCCe
Q psy16880         76 NLNSKL   81 (84)
Q Consensus        76 ~~~~~~   81 (84)
                      +.+.++
T Consensus       748 ~Prs~e  753 (1012)
T KOG1445|consen  748 EPRSRE  753 (1012)
T ss_pred             CCCCCC
Confidence            988664

>KOG0310|consensus

Probab=99.36  E-value=2.5e-11  Score=68.89  Aligned_cols=74  Identities=20%  Similarity=0.388  Sum_probs=63.1

Q ss_pred             EEEeccCCCcCEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880          5 IHTFVHSNNSAVRSISFCSK-QHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus         5 ~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      +..+.+| ++.|.+.+|+|. ...+++|+.|+.+++||.+....       ..+|..+.+-|.+..+++++ .+.+++||
T Consensus       146 ~~~l~~h-tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWD  223 (487)
T KOG0310|consen  146 QAELSGH-TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWD  223 (487)
T ss_pred             EEEecCC-cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEE
Confidence            3467888 999999999995 56899999999999999987633       67899999999998888886 57799999


Q ss_pred             CCCC
Q psy16880         77 LNSK   80 (84)
Q Consensus        77 ~~~~   80 (84)
                      +.++
T Consensus       224 l~~G  227 (487)
T KOG0310|consen  224 LTTG  227 (487)
T ss_pred             ecCC
Confidence            9744

>KOG1310|consensus

Probab=99.36  E-value=5.5e-12  Score=73.04  Aligned_cols=74  Identities=22%  Similarity=0.400  Sum_probs=65.0

Q ss_pred             EEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEcc--CCCEEEEecCCCcEEE
Q psy16880          5 IHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCS--KQRTLISGGDDGSICM   74 (84)
Q Consensus         5 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~--~~~~~~~~~~~~~i~~   74 (84)
                      ...+++| ++.|.++.|+.+|.+|++|+.|..+.+||....+.        ...|.++.|-|  +.++++++..|..|++
T Consensus        43 E~eL~GH-~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   43 EAELTGH-TGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhccc-cceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            3467889 99999999999999999999999999999975554        56799999998  3468889999999999


Q ss_pred             EeCCC
Q psy16880         75 WNLNS   79 (84)
Q Consensus        75 ~~~~~   79 (84)
                      +|+..
T Consensus       122 fdl~~  126 (758)
T KOG1310|consen  122 FDLDS  126 (758)
T ss_pred             Eeccc
Confidence            99875

>KOG0281|consensus

Probab=99.36  E-value=4.1e-12  Score=70.26  Aligned_cols=41  Identities=15%  Similarity=0.468  Sum_probs=34.5

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC   47 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~   47 (84)
                      +++.+.+| .+.|.|+.|  +.+.+++|+.|..+++||.+++.+
T Consensus       229 c~~~L~GH-tGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~  269 (499)
T KOG0281|consen  229 CLKILTGH-TGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEP  269 (499)
T ss_pred             HHHhhhcC-CCcEEeeec--cceEEEecCCCceEEEEeccCCch
Confidence            45667788 999999988  566899999999999999988866

>KOG0973|consensus

Probab=99.36  E-value=1e-11  Score=75.33  Aligned_cols=75  Identities=20%  Similarity=0.376  Sum_probs=69.0

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      .+..+++| .+.|..+.|+|++.+|++++.|.++.+|+..+...       .+.|-++.|.|-|+++++-+.|++|++|+
T Consensus       121 ~~~~l~~H-~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwr  199 (942)
T KOG0973|consen  121 VVSILRGH-DSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWR  199 (942)
T ss_pred             EEEEEecC-CCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEE
Confidence            56788899 99999999999999999999999999999988755       67899999999999999999999999999


Q ss_pred             CCC
Q psy16880         77 LNS   79 (84)
Q Consensus        77 ~~~   79 (84)
                      +.+
T Consensus       200 t~d  202 (942)
T KOG0973|consen  200 TSD  202 (942)
T ss_pred             ccc
Confidence            655

>KOG0281|consensus

Probab=99.34  E-value=2.2e-12  Score=71.28  Aligned_cols=76  Identities=25%  Similarity=0.643  Sum_probs=57.0

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      ++++++++.+| .-.|-|+.+  .++++++|+.|..+++||+..+..       +..|.++.|.  .+.+++|..||+|+
T Consensus       349 t~efvRtl~gH-kRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkik  423 (499)
T KOG0281|consen  349 TCEFVRTLNGH-KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIK  423 (499)
T ss_pred             ceeeehhhhcc-cccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEE
Confidence            45677777777 777777766  678888888888888888876655       5568888884  45688888888888


Q ss_pred             EEeCCCCe
Q psy16880         74 MWNLNSKL   81 (84)
Q Consensus        74 ~~~~~~~~   81 (84)
                      +||+..+.
T Consensus       424 vWdl~aal  431 (499)
T KOG0281|consen  424 VWDLQAAL  431 (499)
T ss_pred             EEeccccc
Confidence            88876543

>KOG1273|consensus

Probab=99.34  E-value=1e-11  Score=67.83  Aligned_cols=77  Identities=18%  Similarity=0.349  Sum_probs=60.0

Q ss_pred             EEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CC------------------------------
Q psy16880          6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DS------------------------------   49 (84)
Q Consensus         6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~------------------------------   49 (84)
                      +.+..| .-+|.+++|+++|++|++++.|..+.+||+..+..      .+                              
T Consensus        59 r~lsaH-~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s  137 (405)
T KOG1273|consen   59 RMLSAH-VRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFS  137 (405)
T ss_pred             hhhhcc-ccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEec
Confidence            345667 88999999999999999999999999999987755      11                              


Q ss_pred             -----------------CEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         50 -----------------AVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        50 -----------------~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                                       ...+..|.+.|+++++|...|.+.+++..+-+++
T Consensus       138 ~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~v  188 (405)
T KOG1273|consen  138 DPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECV  188 (405)
T ss_pred             CCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheee
Confidence                             1123346677778888888888888887776654

>KOG0772|consensus

Probab=99.34  E-value=3.9e-12  Score=72.99  Aligned_cols=70  Identities=19%  Similarity=0.388  Sum_probs=60.6

Q ss_pred             ccCCCcCEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC-------------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880          9 VHSNNSAVRSISFCSK-QHTLISGGDDGSICMWNLNSKLC-------------DSAVRSISFCSKQRTLISGGDDGSICM   74 (84)
Q Consensus         9 ~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~-------------~~~v~~~~~~~~~~~~~~~~~~~~i~~   74 (84)
                      ++| ...+.+.+|+|. ...|++++.|+++++||++....             +-.+...+|+++++.++.++.||.|.+
T Consensus       265 KGH-ia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~  343 (641)
T KOG0772|consen  265 KGH-IAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQI  343 (641)
T ss_pred             CCc-eeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceee
Confidence            567 888999999995 46889999999999999976544             456888999999999999999999999


Q ss_pred             EeCCC
Q psy16880         75 WNLNS   79 (84)
Q Consensus        75 ~~~~~   79 (84)
                      |+..+
T Consensus       344 W~~~~  348 (641)
T KOG0772|consen  344 WDKGS  348 (641)
T ss_pred             eecCC
Confidence            99754

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.34  E-value=5.3e-11  Score=72.32  Aligned_cols=74  Identities=11%  Similarity=0.312  Sum_probs=64.2

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------------------CCCEEEEEEccCCCE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------------------DSAVRSISFCSKQRT   62 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------------------~~~v~~~~~~~~~~~   62 (84)
                      ++++.+.+| ...+.+++|++++.++++|+.|+.+.+|+......                    ...|.+++|+|++..
T Consensus       699 ~~l~~~~gh-~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~  777 (793)
T PLN00181        699 TPLHSFMGH-TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSST  777 (793)
T ss_pred             cceEEEcCC-CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCe
Confidence            467788888 88899999999999999999999999999754321                    235899999999999


Q ss_pred             EEEecCCCcEEEEeC
Q psy16880         63 LISGGDDGSICMWNL   77 (84)
Q Consensus        63 ~~~~~~~~~i~~~~~   77 (84)
                      +++++.+|.|++|++
T Consensus       778 lva~~~dG~I~i~~~  792 (793)
T PLN00181        778 LVAANSTGNIKILEM  792 (793)
T ss_pred             EEEecCCCcEEEEec
Confidence            999999999999985

>KOG0277|consensus

Probab=99.34  E-value=8.5e-12  Score=66.41  Aligned_cols=76  Identities=22%  Similarity=0.511  Sum_probs=64.8

Q ss_pred             ceEEEeccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccC-CCEEEEecCCCcEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSK-QRTLISGGDDGSIC   73 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~-~~~~~~~~~~~~i~   73 (84)
                      ++++.++.| ...|.++.|++ ....+++++.|+++++||.+.+..       +..|+...|+|. ...+++++.|+.++
T Consensus        95 ~Pi~~~kEH-~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~  173 (311)
T KOG0277|consen   95 KPIHKFKEH-KREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLR  173 (311)
T ss_pred             cchhHHHhh-hhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEE
Confidence            467788888 99999999999 566778889999999999976655       667999999995 56888999999999


Q ss_pred             EEeCCC
Q psy16880         74 MWNLNS   79 (84)
Q Consensus        74 ~~~~~~   79 (84)
                      +||++.
T Consensus       174 lwdvr~  179 (311)
T KOG0277|consen  174 LWDVRS  179 (311)
T ss_pred             EEEecC
Confidence            999864

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.33  E-value=1.2e-10  Score=60.56  Aligned_cols=69  Identities=19%  Similarity=0.445  Sum_probs=55.3

Q ss_pred             CcCEEEEEEccCCCEEEEeCC---CCcEEEEeCCCCCC-----CCCEEEEEEccCCCEEEEecC------CCcEEEEeCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGD---DGSICMWNLNSKLC-----DSAVRSISFCSKQRTLISGGD------DGSICMWNLN   78 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~---~~~~~~~d~~~~~~-----~~~v~~~~~~~~~~~~~~~~~------~~~i~~~~~~   78 (84)
                      ...+..+.|+|+|++++.++.   .|.+.+||.+....     ...+..++|+|+|+.++++..      |+.++||+..
T Consensus       100 ~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  100 TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            456778999999999988753   46799999986655     446889999999999988753      7789999986


Q ss_pred             CCe
Q psy16880         79 SKL   81 (84)
Q Consensus        79 ~~~   81 (84)
                      ...
T Consensus       180 G~~  182 (194)
T PF08662_consen  180 GRL  182 (194)
T ss_pred             CeE
Confidence            543

>KOG0267|consensus

Probab=99.32  E-value=2.7e-12  Score=75.72  Aligned_cols=81  Identities=22%  Similarity=0.481  Sum_probs=70.4

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICM   74 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~   74 (84)
                      ++.++++.+| ...+..+.|+|-+.+++.|+.|..+.+||++...+       ...+..+.|+|+|++++.++.|..+++
T Consensus       102 Ak~vrtLtgh-~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki  180 (825)
T KOG0267|consen  102 AKIVRTLTGH-LLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKI  180 (825)
T ss_pred             hhhhhhhhcc-ccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeee
Confidence            4556788888 99999999999999999999999999999985544       345888999999999999999999999


Q ss_pred             EeCCCCeec
Q psy16880         75 WNLNSKLCD   83 (84)
Q Consensus        75 ~~~~~~~~~   83 (84)
                      ||...++.+
T Consensus       181 ~d~~agk~~  189 (825)
T KOG0267|consen  181 WDLTAGKLS  189 (825)
T ss_pred             ecccccccc
Confidence            999776643

>KOG0293|consensus

Probab=99.31  E-value=1.4e-11  Score=69.18  Aligned_cols=77  Identities=17%  Similarity=0.342  Sum_probs=66.8

Q ss_pred             EEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      +.++.| .+.|+.+.|+++|++|++++.|.+..+|++.....          ...|.-+.|+|+.+++++++.+..+.+|
T Consensus       218 qil~~h-tdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw  296 (519)
T KOG0293|consen  218 QILQDH-TDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW  296 (519)
T ss_pred             hhHhhC-CCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence            345667 89999999999999999999999999998754332          6789999999999999999999999999


Q ss_pred             eCCCCeec
Q psy16880         76 NLNSKLCD   83 (84)
Q Consensus        76 ~~~~~~~~   83 (84)
                      |..++.+.
T Consensus       297 Dv~tgd~~  304 (519)
T KOG0293|consen  297 DVDTGDLR  304 (519)
T ss_pred             cCCcchhh
Confidence            99887654

>KOG0305|consensus

Probab=99.31  E-value=4.5e-11  Score=68.81  Aligned_cols=76  Identities=20%  Similarity=0.415  Sum_probs=61.2

Q ss_pred             EEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------------------------------------
Q psy16880          5 IHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------------------------------------   47 (84)
Q Consensus         5 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------------------------------------   47 (84)
                      ....+.+ ...|.++.|+++|..|+.|..+|.+.+||......                                     
T Consensus       210 ~~l~~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR  288 (484)
T KOG0305|consen  210 TELCSFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVR  288 (484)
T ss_pred             EEeEecC-CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEe
Confidence            3333344 67899999999999999999999999999754422                                     


Q ss_pred             ------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880         48 ------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        48 ------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (84)
                                  ...|+.+.|++++.++++++.|+.+.|||.....
T Consensus       289 ~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~  334 (484)
T KOG0305|consen  289 ISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE  334 (484)
T ss_pred             cchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc
Confidence                        5678999999999999999999999999885433

>KOG0274|consensus

Probab=99.31  E-value=3.4e-11  Score=70.44  Aligned_cols=79  Identities=27%  Similarity=0.527  Sum_probs=60.9

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      +|++++.+.+| .++|.++..+  +..+++|+.|+.+.+||+.....       ...|.++.+.+. ..+++++.|+.|+
T Consensus       320 n~~~l~l~~~h-~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~Ik  395 (537)
T KOG0274|consen  320 NGACLNLLRGH-TGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIK  395 (537)
T ss_pred             CcceEEEeccc-cccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceE
Confidence            36777888777 8888888875  78888888888888888876655       556777766554 6788888888888


Q ss_pred             EEeCCCC-eec
Q psy16880         74 MWNLNSK-LCD   83 (84)
Q Consensus        74 ~~~~~~~-~~~   83 (84)
                      +||+++. +|+
T Consensus       396 vWdl~~~~~c~  406 (537)
T KOG0274|consen  396 VWDLRTKRKCI  406 (537)
T ss_pred             eecCCchhhhh
Confidence            8888877 543

>KOG0274|consensus

Probab=99.30  E-value=8.3e-11  Score=68.88  Aligned_cols=79  Identities=24%  Similarity=0.584  Sum_probs=68.6

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      +|++.+.+.+| .+.|.++..  ..-.+.+|+.|..+++|++.++..       ...|.++.+.  +..+++|+.|+.|+
T Consensus       280 sg~C~~~l~gh-~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~  354 (537)
T KOG0274|consen  280 TGECTHSLQGH-TSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVK  354 (537)
T ss_pred             CCcEEEEecCC-CceEEEEEc--cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEE
Confidence            58999999999 999998866  566778899999999999987655       5678999886  77899999999999


Q ss_pred             EEeCCCCeecC
Q psy16880         74 MWNLNSKLCDR   84 (84)
Q Consensus        74 ~~~~~~~~~~~   84 (84)
                      +|++.+.++++
T Consensus       355 VW~~~~~~cl~  365 (537)
T KOG0274|consen  355 VWDPRTGKCLK  365 (537)
T ss_pred             EEEhhhceeee
Confidence            99999988764

>KOG0269|consensus

Probab=99.30  E-value=9e-12  Score=73.96  Aligned_cols=76  Identities=16%  Similarity=0.370  Sum_probs=61.3

Q ss_pred             EEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCC-EEEEecC--CCcEE
Q psy16880          5 IHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQR-TLISGGD--DGSIC   73 (84)
Q Consensus         5 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~-~~~~~~~--~~~i~   73 (84)
                      ...+..| .++|.|+.|+|+..+|++|+.|+.+++||+.....        ..++.++.|.|... .+++++.  |..|+
T Consensus       213 ~~k~~AH-~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~  291 (839)
T KOG0269|consen  213 EKKLTAH-NGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVH  291 (839)
T ss_pred             HHHhhcc-cCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEE
Confidence            3445567 99999999999999999999999999999975544        56899999999654 4555543  67899


Q ss_pred             EEeCCCCe
Q psy16880         74 MWNLNSKL   81 (84)
Q Consensus        74 ~~~~~~~~   81 (84)
                      |||++...
T Consensus       292 VWDvrRPY  299 (839)
T KOG0269|consen  292 VWDVRRPY  299 (839)
T ss_pred             EEeecccc
Confidence            99997654

>KOG0300|consensus

Probab=99.30  E-value=2.1e-11  Score=66.94  Aligned_cols=79  Identities=19%  Similarity=0.477  Sum_probs=67.9

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSI   72 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i   72 (84)
                      +|++++.+.+| .....-++-+|..+++++.+.|..+++||.+..-.        ...|+.+.|..+. .+++++.|.++
T Consensus       303 tge~v~~LtGH-d~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTv  380 (481)
T KOG0300|consen  303 TGEVVNILTGH-DSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTV  380 (481)
T ss_pred             cCceeccccCc-chhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceE
Confidence            57889999999 88888888899999999999999999999985433        5568888888655 48899999999


Q ss_pred             EEEeCCCCe
Q psy16880         73 CMWNLNSKL   81 (84)
Q Consensus        73 ~~~~~~~~~   81 (84)
                      ++||++++.
T Consensus       381 KvWdLrNMR  389 (481)
T KOG0300|consen  381 KVWDLRNMR  389 (481)
T ss_pred             EEeeecccc
Confidence            999998765

>KOG0294|consensus

Probab=99.28  E-value=8.3e-11  Score=64.20  Aligned_cols=77  Identities=19%  Similarity=0.419  Sum_probs=65.8

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCC--EEEEecCCCcEEE
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQR--TLISGGDDGSICM   74 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~--~~~~~~~~~~i~~   74 (84)
                      ++..++.| .+.|.++++  ++.++++|+.|..+.+||++....       .+.|+++.|.+...  .+++++.||.|.+
T Consensus        35 ~lF~~~aH-~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i  111 (362)
T KOG0294|consen   35 PLFAFSAH-AGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII  111 (362)
T ss_pred             cccccccc-ccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence            35667778 999999998  699999999999999999987655       77899999987654  7999999999999


Q ss_pred             EeCCCCeec
Q psy16880         75 WNLNSKLCD   83 (84)
Q Consensus        75 ~~~~~~~~~   83 (84)
                      |+....+++
T Consensus       112 w~~~~W~~~  120 (362)
T KOG0294|consen  112 WRVGSWELL  120 (362)
T ss_pred             EEcCCeEEe
Confidence            998876654

>KOG1063|consensus

Probab=99.28  E-value=3.7e-11  Score=70.77  Aligned_cols=74  Identities=11%  Similarity=0.293  Sum_probs=64.2

Q ss_pred             EEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880          6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----------DSAVRSISFCSKQRTLISGGDDGSICM   74 (84)
Q Consensus         6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~i~~   74 (84)
                      +.+++| .-.|..|+|+|++++|++.+.|+.+.+|.......           ...|....|+|+++.++++++|.++++
T Consensus       566 ~~L~~H-sLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkV  644 (764)
T KOG1063|consen  566 QELEGH-SLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKV  644 (764)
T ss_pred             heeccc-ceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEE
Confidence            357788 88999999999999999999999999998754332           456888999999999999999999999


Q ss_pred             EeCCCC
Q psy16880         75 WNLNSK   80 (84)
Q Consensus        75 ~~~~~~   80 (84)
                      |...+.
T Consensus       645 W~~~~~  650 (764)
T KOG1063|consen  645 WEEPDL  650 (764)
T ss_pred             EeccCc
Confidence            987655

>KOG0308|consensus

Probab=99.27  E-value=7.6e-11  Score=69.19  Aligned_cols=73  Identities=21%  Similarity=0.474  Sum_probs=66.4

Q ss_pred             cCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880         10 HSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        10 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                      ++ ...|.+++.++.+..+++|+..+.+++||.++...       ...|..+-..++|+.+++++.|++|++||+...+|
T Consensus       169 G~-k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrC  247 (735)
T KOG0308|consen  169 GP-KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRC  247 (735)
T ss_pred             CC-ccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccce
Confidence            56 78899999999999999999999999999987765       56799999999999999999999999999988777


Q ss_pred             c
Q psy16880         83 D   83 (84)
Q Consensus        83 ~   83 (84)
                      +
T Consensus       248 l  248 (735)
T KOG0308|consen  248 L  248 (735)
T ss_pred             e
Confidence            5

>KOG1188|consensus

Probab=99.27  E-value=6.4e-11  Score=65.09  Aligned_cols=78  Identities=23%  Similarity=0.522  Sum_probs=63.6

Q ss_pred             CCceEEEeccCCCcCEEEEEEcc--CCCEEEEeCCCCcEEEEeCCCCCC-------------------------------
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCS--KQHTLISGGDDGSICMWNLNSKLC-------------------------------   47 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~~~~~d~~~~~~-------------------------------   47 (84)
                      +|+.++.+.++ ...+..++|..  .+..+.+++.||.|++||++....                               
T Consensus        59 tg~~l~~fk~~-~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE  137 (376)
T KOG1188|consen   59 TGQLLEEFKGP-PATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTE  137 (376)
T ss_pred             chhhhheecCC-CCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccc
Confidence            46678888888 88888888877  567889999999999999985533                               


Q ss_pred             ---------------------------CCCEEEEEEccC-CCEEEEecCCCcEEEEeCCC
Q psy16880         48 ---------------------------DSAVRSISFCSK-QRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus        48 ---------------------------~~~v~~~~~~~~-~~~~~~~~~~~~i~~~~~~~   79 (84)
                                                 ...|++++|+|+ ..++++|+.||.+.+||++.
T Consensus       138 ~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~  197 (376)
T KOG1188|consen  138 LTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK  197 (376)
T ss_pred             cccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence                                       456899999984 56888999999999998864

>KOG0288|consensus

Probab=99.26  E-value=1.6e-10  Score=64.89  Aligned_cols=79  Identities=18%  Similarity=0.308  Sum_probs=68.1

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----------CCCEEEEEEccCCCEEEEecCCCc
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----------DSAVRSISFCSKQRTLISGGDDGS   71 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~   71 (84)
                      .+++.++.  .+.|.+++.++++..+++.+.|..+.+.|.++...           ....+.+.|+|++.++++|+.||.
T Consensus       333 ~~~~sv~~--gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs  410 (459)
T KOG0288|consen  333 DKTRSVPL--GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS  410 (459)
T ss_pred             ceeeEeec--CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCc
Confidence            45555555  36899999999999999999999999999998766           456788999999999999999999


Q ss_pred             EEEEeCCCCeec
Q psy16880         72 ICMWNLNSKLCD   83 (84)
Q Consensus        72 i~~~~~~~~~~~   83 (84)
                      +++|++.++++.
T Consensus       411 v~iW~v~tgKlE  422 (459)
T KOG0288|consen  411 VYIWSVFTGKLE  422 (459)
T ss_pred             EEEEEccCceEE
Confidence            999999988764

>KOG2048|consensus

Probab=99.25  E-value=2.8e-10  Score=66.90  Aligned_cols=81  Identities=22%  Similarity=0.302  Sum_probs=69.0

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSI   72 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i   72 (84)
                      ++....++.. .+.|++|+.+|.+..++.|+.+|.+..+++.....         .+++.+++|.|++..++.|+.|+.|
T Consensus       100 lk~~~~~d~~-gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~I  178 (691)
T KOG2048|consen  100 LKQKYNIDSN-GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVI  178 (691)
T ss_pred             CceeEEecCC-CcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceE
Confidence            4566666666 78999999999999999999999777777766555         5789999999999999999999999


Q ss_pred             EEEeCCCCeec
Q psy16880         73 CMWNLNSKLCD   83 (84)
Q Consensus        73 ~~~~~~~~~~~   83 (84)
                      ++||...+..+
T Consensus       179 riwd~~~~~t~  189 (691)
T KOG2048|consen  179 RIWDVKSGQTL  189 (691)
T ss_pred             EEEEcCCCceE
Confidence            99999876643

>KOG1009|consensus

Probab=99.24  E-value=1.1e-10  Score=65.36  Aligned_cols=78  Identities=22%  Similarity=0.485  Sum_probs=66.5

Q ss_pred             EEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCC--------C-----CCC----------CCCEEEEEEccCCC
Q psy16880          5 IHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLN--------S-----KLC----------DSAVRSISFCSKQR   61 (84)
Q Consensus         5 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~--------~-----~~~----------~~~v~~~~~~~~~~   61 (84)
                      +..+..| +..|.++.|+|+|..|++|+.++.+.+|-..        +     ...          ...++.++|+|++.
T Consensus        58 ~s~Ls~H-~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~  136 (434)
T KOG1009|consen   58 LSSLSRH-TRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN  136 (434)
T ss_pred             eecccCC-cceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc
Confidence            4456667 8899999999999999999999999999765        2     100          46789999999999


Q ss_pred             EEEEecCCCcEEEEeCCCCeec
Q psy16880         62 TLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        62 ~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      .+.+++.|+.+++||+..++.+
T Consensus       137 ~l~s~s~dns~~l~Dv~~G~l~  158 (434)
T KOG1009|consen  137 FLVSGSVDNSVRLWDVHAGQLL  158 (434)
T ss_pred             eeeeeeccceEEEEEeccceeE
Confidence            9999999999999999988754

>KOG0289|consensus

Probab=99.24  E-value=1.8e-10  Score=65.14  Aligned_cols=73  Identities=22%  Similarity=0.345  Sum_probs=64.9

Q ss_pred             eccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcEEEEeCC
Q psy16880          8 FVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSICMWNLN   78 (84)
Q Consensus         8 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~   78 (84)
                      .+.| +++|..+..+|.|.+|+++++++.+.+.|+..+..         .-.+++.+|+|+|-++.++..|+.+++||+.
T Consensus       299 ~~~h-~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk  377 (506)
T KOG0289|consen  299 SRPH-EEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK  377 (506)
T ss_pred             cccc-cccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcC
Confidence            3456 89999999999999999999999999999998876         2348999999999999999999999999997


Q ss_pred             CCe
Q psy16880         79 SKL   81 (84)
Q Consensus        79 ~~~   81 (84)
                      +..
T Consensus       378 s~~  380 (506)
T KOG0289|consen  378 SQT  380 (506)
T ss_pred             Ccc
Confidence            654

>KOG1407|consensus

Probab=99.23  E-value=2.2e-10  Score=61.36  Aligned_cols=80  Identities=16%  Similarity=0.377  Sum_probs=65.3

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------------------------------
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------------------------------   47 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------------------------------   47 (84)
                      ++++...++.. .+.+ -+.|+|++.+++.++.+-.+.+.|.++.+.                                 
T Consensus        96 ~~k~~~~i~~~-~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~I  173 (313)
T KOG1407|consen   96 SGKCTARIETK-GENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEI  173 (313)
T ss_pred             cCcEEEEeecc-Ccce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEE
Confidence            35677777665 5555 568999999999999999999999876544                                 


Q ss_pred             ---------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880         48 ---------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        48 ---------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                                     +....|+.|.|+|+++++|+.|..+.+||+...-|
T Consensus       174 LsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC  223 (313)
T KOG1407|consen  174 LSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELIC  223 (313)
T ss_pred             EeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhh
Confidence                           55678899999999999999999999999876544

>KOG0278|consensus

Probab=99.23  E-value=1e-11  Score=66.13  Aligned_cols=80  Identities=20%  Similarity=0.559  Sum_probs=66.9

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      |..++.++ | +.-|.+++|+.+...|++|+....+++||++.+..        .+.|..+-|+-..+.+++...|+.++
T Consensus        91 gdelhsf~-h-khivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVR  168 (334)
T KOG0278|consen   91 GDELHSFE-H-KHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVR  168 (334)
T ss_pred             hhhhhhhh-h-hheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceE
Confidence            33444443 3 67889999999999999999999999999986654        66799999988778888889999999


Q ss_pred             EEeCCCCeec
Q psy16880         74 MWNLNSKLCD   83 (84)
Q Consensus        74 ~~~~~~~~~~   83 (84)
                      +||.+++..+
T Consensus       169 LWD~rTgt~v  178 (334)
T KOG0278|consen  169 LWDHRTGTEV  178 (334)
T ss_pred             EEEeccCcEE
Confidence            9999988764

>KOG0294|consensus

Probab=99.23  E-value=1.1e-10  Score=63.73  Aligned_cols=73  Identities=25%  Similarity=0.459  Sum_probs=62.7

Q ss_pred             eccCCCcCEEEEEEccCCC--EEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCC
Q psy16880          8 FVHSNNSAVRSISFCSKQH--TLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLN   78 (84)
Q Consensus         8 ~~~~~~~~v~~~~~~~~~~--~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~   78 (84)
                      +-.| .+.|+++.|.+...  .|++|+.||.+.+|+......       ...|+.++++|.++..++++.|+.+++||+-
T Consensus        79 ll~H-agsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV  157 (362)
T KOG0294|consen   79 LLSH-AGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV  157 (362)
T ss_pred             eecc-ccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhh
Confidence            3345 88999999998664  899999999999999976644       5669999999999999999999999999986


Q ss_pred             CCe
Q psy16880         79 SKL   81 (84)
Q Consensus        79 ~~~   81 (84)
                      .++
T Consensus       158 ~Gr  160 (362)
T KOG0294|consen  158 RGR  160 (362)
T ss_pred             cCc
Confidence            554

>KOG1272|consensus

Probab=99.22  E-value=2.9e-11  Score=68.70  Aligned_cols=80  Identities=19%  Similarity=0.332  Sum_probs=69.7

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICM   74 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~   74 (84)
                      |+++..+... .+.+..|+-+|-...+-.|..+|.|.+|.......       .+.|+++++.++|+++++.+.|..++|
T Consensus       241 GklVa~~~t~-~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kI  319 (545)
T KOG1272|consen  241 GKLVASIRTG-AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKI  319 (545)
T ss_pred             hhhhHHHHcc-CCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeE
Confidence            5666666666 78888999999999999999999999999876655       889999999999999999999999999


Q ss_pred             EeCCCCee
Q psy16880         75 WNLNSKLC   82 (84)
Q Consensus        75 ~~~~~~~~   82 (84)
                      ||+++-+.
T Consensus       320 WDlR~~~q  327 (545)
T KOG1272|consen  320 WDLRNFYQ  327 (545)
T ss_pred             eeeccccc
Confidence            99986543

>KOG0303|consensus

Probab=99.22  E-value=3.4e-11  Score=67.36  Aligned_cols=74  Identities=19%  Similarity=0.495  Sum_probs=62.5

Q ss_pred             eccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC--------------CCCEEEEEEccCC-CEEEEecCCCc
Q psy16880          8 FVHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC--------------DSAVRSISFCSKQ-RTLISGGDDGS   71 (84)
Q Consensus         8 ~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~--------------~~~v~~~~~~~~~-~~~~~~~~~~~   71 (84)
                      +.+| +++|..++|+| +...+++|+.|..+.+|++.....              ...|..++|+|.. +.+++++.|++
T Consensus        77 v~GH-t~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   77 VCGH-TAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             ccCc-cccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            4678 99999999999 567899999999999999975544              5678899999965 56678889999


Q ss_pred             EEEEeCCCCee
Q psy16880         72 ICMWNLNSKLC   82 (84)
Q Consensus        72 i~~~~~~~~~~   82 (84)
                      |.+|+..+++.
T Consensus       156 v~iWnv~tgea  166 (472)
T KOG0303|consen  156 VSIWNVGTGEA  166 (472)
T ss_pred             EEEEeccCCce
Confidence            99999998874

>KOG0642|consensus

Probab=99.20  E-value=4.4e-10  Score=65.00  Aligned_cols=77  Identities=29%  Similarity=0.423  Sum_probs=66.2

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------------------CCCEEEEEEccCCCEEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------------------DSAVRSISFCSKQRTLI   64 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------------------~~~v~~~~~~~~~~~~~   64 (84)
                      +++.++++| .++|.|+.+.+++..+.+|+.|+.++.|.+. ...                  ...+..+++++....++
T Consensus       335 epi~tfraH-~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p-~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Ll  412 (577)
T KOG0642|consen  335 EPILTFRAH-EGPVLCVVVPSNGEHCYSGGIDGTIRCWNLP-PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLL  412 (577)
T ss_pred             eeeEEEecc-cCceEEEEecCCceEEEeeccCceeeeeccC-CCCCcccccCcchhccceeccccceeeeeeccccccee
Confidence            478899999 9999999999999999999999999999664 222                  56788899998888899


Q ss_pred             EecCCCcEEEEeCCCCe
Q psy16880         65 SGGDDGSICMWNLNSKL   81 (84)
Q Consensus        65 ~~~~~~~i~~~~~~~~~   81 (84)
                      +++.||++++|+.....
T Consensus       413 scs~DgTvr~w~~~~~~  429 (577)
T KOG0642|consen  413 SCSSDGTVRLWEPTEES  429 (577)
T ss_pred             eecCCceEEeeccCCcC
Confidence            99999999999876543

>KOG0300|consensus

Probab=99.20  E-value=7.1e-11  Score=64.94  Aligned_cols=83  Identities=14%  Similarity=0.333  Sum_probs=69.7

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCC----CCCC-----------------------------
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLN----SKLC-----------------------------   47 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~----~~~~-----------------------------   47 (84)
                      +|+|+.+|.+| .+.|.+++|++.+.++++++.|+.-.+|...    .+..                             
T Consensus       179 sg~CL~~Y~GH-~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD  257 (481)
T KOG0300|consen  179 SGACLATYTGH-TGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSD  257 (481)
T ss_pred             cccceeeeccc-ccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccC
Confidence            58899999999 9999999999999999999999999999621    1110                             


Q ss_pred             --------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeecC
Q psy16880         48 --------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCDR   84 (84)
Q Consensus        48 --------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   84 (84)
                                    ...|.+..|-..+..++++++|.+..+||.++++.++
T Consensus       258 ~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~  308 (481)
T KOG0300|consen  258 GHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVN  308 (481)
T ss_pred             CceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceec
Confidence                          4456777777788899999999999999999988764

>KOG4283|consensus

Probab=99.20  E-value=2.3e-10  Score=62.36  Aligned_cols=67  Identities=18%  Similarity=0.394  Sum_probs=57.5

Q ss_pred             CcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC--------------------------------------------
Q psy16880         13 NSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC--------------------------------------------   47 (84)
Q Consensus        13 ~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~--------------------------------------------   47 (84)
                      .-.|.++-|.| +...|.+++.|..+++||.++.+.                                            
T Consensus       101 ky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~  180 (397)
T KOG4283|consen  101 KYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF  180 (397)
T ss_pred             eeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc
Confidence            66788999999 778999999999999999987654                                            


Q ss_pred             -------CCCEEEEEEccCCCEE-EEecCCCcEEEEeCCC
Q psy16880         48 -------DSAVRSISFCSKQRTL-ISGGDDGSICMWNLNS   79 (84)
Q Consensus        48 -------~~~v~~~~~~~~~~~~-~~~~~~~~i~~~~~~~   79 (84)
                             +..|.++.|+|...++ ++++.|+.|++||++.
T Consensus       181 sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRr  220 (397)
T KOG4283|consen  181 SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRR  220 (397)
T ss_pred             eeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeec
Confidence                   6789999999977654 6889999999999874

>KOG2096|consensus

Probab=99.20  E-value=2.5e-10  Score=62.75  Aligned_cols=69  Identities=14%  Similarity=0.320  Sum_probs=48.1

Q ss_pred             EEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----------CCCEEEEEEccCCCEEEE-ecCCCcEE
Q psy16880          6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----------DSAVRSISFCSKQRTLIS-GGDDGSIC   73 (84)
Q Consensus         6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----------~~~v~~~~~~~~~~~~~~-~~~~~~i~   73 (84)
                      ..+++| .+.|.+|+|+.+|..|++++.|+.+++|+++....           ....+.+.|.|+.+-++. +-..++++
T Consensus        80 ~~LKgH-~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   80 SVLKGH-KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhcc-CCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            356788 99999999999999999999999999999975433           234455555555443322 22233455


Q ss_pred             EE
Q psy16880         74 MW   75 (84)
Q Consensus        74 ~~   75 (84)
                      +|
T Consensus       159 vy  160 (420)
T KOG2096|consen  159 VY  160 (420)
T ss_pred             EE
Confidence            55

>KOG0290|consensus

Probab=99.19  E-value=7.6e-10  Score=60.18  Aligned_cols=73  Identities=25%  Similarity=0.480  Sum_probs=60.8

Q ss_pred             EeccCCCcCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC--------------------------------------
Q psy16880          7 TFVHSNNSAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC--------------------------------------   47 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~--------------------------------------   47 (84)
                      .+-.| ...|..++|..++ ..|++.+.||++++||++....                                      
T Consensus       191 QLIAH-DKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~  269 (364)
T KOG0290|consen  191 QLIAH-DKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVV  269 (364)
T ss_pred             EEEec-CcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEE
Confidence            44456 8999999999855 5899999999999999986533                                      


Q ss_pred             -----------------CCCEEEEEEccCC-CEEEEecCCCcEEEEeCCCC
Q psy16880         48 -----------------DSAVRSISFCSKQ-RTLISGGDDGSICMWNLNSK   80 (84)
Q Consensus        48 -----------------~~~v~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~   80 (84)
                                       ++.|.+++|.|.. ..+.+++.|....+||+...
T Consensus       270 iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  270 ILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             EEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence                             6789999999965 57788889999999998754

>KOG0641|consensus

Probab=99.19  E-value=5.2e-10  Score=59.24  Aligned_cols=66  Identities=21%  Similarity=0.317  Sum_probs=60.7

Q ss_pred             cCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880         14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~   79 (84)
                      +.|.++++.|.|++|++|-.|..+.+||++.+..       ...|+++.|+|...++++++.|..|++-|+..
T Consensus       232 savaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  232 SAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             ceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence            5789999999999999999999999999998766       67899999999999999999999999998764

>KOG1332|consensus

Probab=99.17  E-value=1.1e-09  Score=58.34  Aligned_cols=77  Identities=16%  Similarity=0.346  Sum_probs=65.9

Q ss_pred             ceEEEeccCCCcCEEEEEEcc--CCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCC--CEEEEecCC
Q psy16880          3 SIIHTFVHSNNSAVRSISFCS--KQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQ--RTLISGGDD   69 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~--~~~~~~~~~   69 (84)
                      +++.++.+| .++|..++|--  -|..|++++.|+.+.+|....+.-         ...|.+++|.|++  -.+++++.|
T Consensus        47 ~ll~~L~Gh-~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSD  125 (299)
T KOG1332|consen   47 KLLAELTGH-SGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD  125 (299)
T ss_pred             eeeeEecCC-CCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCC
Confidence            577889999 99999999965  789999999999999999876633         6789999999864  578899999


Q ss_pred             CcEEEEeCCCC
Q psy16880         70 GSICMWNLNSK   80 (84)
Q Consensus        70 ~~i~~~~~~~~   80 (84)
                      |.|.+.+.++.
T Consensus       126 G~vsvl~~~~~  136 (299)
T KOG1332|consen  126 GKVSVLTYDSS  136 (299)
T ss_pred             CcEEEEEEcCC
Confidence            99999987643

>KOG0306|consensus

Probab=99.17  E-value=5.2e-10  Score=66.80  Aligned_cols=77  Identities=21%  Similarity=0.446  Sum_probs=67.8

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      ..-.+.|| .-+|.||+.+|++..+++|+.|..+++|-++-+.+       ...|.++.|.|+..++.+++.|+.++-||
T Consensus       542 FflsLYGH-kLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWD  620 (888)
T KOG0306|consen  542 FFLSLYGH-KLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWD  620 (888)
T ss_pred             eeeeeccc-ccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeec
Confidence            34467788 99999999999999999999999999998876655       57899999999999999999999999998


Q ss_pred             CCCCe
Q psy16880         77 LNSKL   81 (84)
Q Consensus        77 ~~~~~   81 (84)
                      -..-+
T Consensus       621 g~kFe  625 (888)
T KOG0306|consen  621 GEKFE  625 (888)
T ss_pred             hhhhh
Confidence            65443

>KOG0639|consensus

Probab=99.16  E-value=1.2e-10  Score=67.13  Aligned_cols=78  Identities=21%  Similarity=0.388  Sum_probs=66.0

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----------------------------------
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----------------------------------   47 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----------------------------------   47 (84)
                      ..++.+++| ++.+.||..+++|..|.+|+.|..++.||+++...                                   
T Consensus       542 ~~VrqfqGh-tDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh  620 (705)
T KOG0639|consen  542 TLVRQFQGH-TDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLH  620 (705)
T ss_pred             eeeecccCC-CCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEe
Confidence            468899999 99999999999999999999999999999987755                                   


Q ss_pred             ------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880         48 ------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        48 ------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (84)
                                  ++.|..+.|.+.|+++++.+.|+.+..|....+-
T Consensus       621 ~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGa  666 (705)
T KOG0639|consen  621 TSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA  666 (705)
T ss_pred             cCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCcccc
Confidence                        5567778888888888888888888888766543

>KOG1036|consensus

Probab=99.16  E-value=8.8e-10  Score=59.95  Aligned_cols=67  Identities=27%  Similarity=0.523  Sum_probs=59.0

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSK   80 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   80 (84)
                      .+++.+++|.+ ....++|+.|+.++++|+++...      ...+.++.+.+....++++++|++|++||.+..
T Consensus        54 ~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~  126 (323)
T KOG1036|consen   54 GAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK  126 (323)
T ss_pred             CCceeeeeccC-CceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc
Confidence            78999999886 56778899999999999988766      678999999988888999999999999999853

>KOG0306|consensus

Probab=99.16  E-value=5.5e-10  Score=66.70  Aligned_cols=70  Identities=17%  Similarity=0.325  Sum_probs=63.0

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                      ++.|.|++++|++++|+.+-.|..+.+|-+++.+-       .-+|.++.++|+++++++|+.|..+++|-+.=+.|
T Consensus       508 ~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC  584 (888)
T KOG0306|consen  508 EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC  584 (888)
T ss_pred             cccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh
Confidence            57899999999999999999999999999887655       55899999999999999999999999998765554

>KOG0267|consensus

Probab=99.16  E-value=2.7e-11  Score=71.70  Aligned_cols=75  Identities=23%  Similarity=0.500  Sum_probs=66.5

Q ss_pred             EeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880          7 TFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~   79 (84)
                      .+.+| .++|.++.|++...++++|..+|.+++||+.....       ...+..+.|+|.+.+++.++.|..+.+||.+.
T Consensus        65 S~~~h-espIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk  143 (825)
T KOG0267|consen   65 SLTGH-ESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK  143 (825)
T ss_pred             eeecc-CCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc
Confidence            46778 99999999999999999999999999999987764       56788899999999999999999999999985


Q ss_pred             Cee
Q psy16880         80 KLC   82 (84)
Q Consensus        80 ~~~   82 (84)
                      +-|
T Consensus       144 ~Gc  146 (825)
T KOG0267|consen  144 KGC  146 (825)
T ss_pred             cCc
Confidence            544

>KOG2919|consensus

Probab=99.14  E-value=1.2e-09  Score=60.17  Aligned_cols=77  Identities=22%  Similarity=0.429  Sum_probs=60.9

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCC-CCcEEEEeCCCCCC-----------CCCEEEEEEccCCCEEEEecCC
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGD-DGSICMWNLNSKLC-----------DSAVRSISFCSKQRTLISGGDD   69 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~~~~~d~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~   69 (84)
                      +.++..+-+| .+.|+.+.|+++|..|.+|.. +-.+..||++....           .++---+...|.+.++++|+.+
T Consensus       240 ~~pl~llggh-~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~td  318 (406)
T KOG2919|consen  240 RRPLQLLGGH-GGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTD  318 (406)
T ss_pred             CCceeeeccc-CCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCC
Confidence            4567777788 999999999999999988865 55888999986543           1222234446899999999999


Q ss_pred             CcEEEEeCCC
Q psy16880         70 GSICMWNLNS   79 (84)
Q Consensus        70 ~~i~~~~~~~   79 (84)
                      |.|++||+.+
T Consensus       319 G~V~vwdlk~  328 (406)
T KOG2919|consen  319 GSVRVWDLKD  328 (406)
T ss_pred             ccEEEEecCC
Confidence            9999999876

>KOG0308|consensus

Probab=99.13  E-value=1.5e-09  Score=63.98  Aligned_cols=77  Identities=25%  Similarity=0.430  Sum_probs=68.2

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICM   74 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~   74 (84)
                      ++.+..+++| +..|.++..+++|..+++++.|+.+++||+.....       ...|.+...+|.-..+.+|+.|+.|..
T Consensus       203 ~~kimkLrGH-TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~  281 (735)
T KOG0308|consen  203 CKKIMKLRGH-TDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYR  281 (735)
T ss_pred             ccceeeeecc-ccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEe
Confidence            4566778899 99999999999999999999999999999987666       455888888898889999999999998


Q ss_pred             EeCCC
Q psy16880         75 WNLNS   79 (84)
Q Consensus        75 ~~~~~   79 (84)
                      =|+++
T Consensus       282 Tdl~n  286 (735)
T KOG0308|consen  282 TDLRN  286 (735)
T ss_pred             cccCC
Confidence            88876

>KOG0307|consensus

Probab=99.13  E-value=5.4e-11  Score=72.77  Aligned_cols=77  Identities=30%  Similarity=0.497  Sum_probs=64.4

Q ss_pred             EEEeccCCCcCEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEcc-CCCEEEEecCCCcEE
Q psy16880          5 IHTFVHSNNSAVRSISFCSKQH-TLISGGDDGSICMWNLNSKLC---------DSAVRSISFCS-KQRTLISGGDDGSIC   73 (84)
Q Consensus         5 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~-~~~~~~~~~~~~~i~   73 (84)
                      +.+...| ++.|..++|++.+. .|++|..+|.|.+||++....         ...|.+++|.. ..+++++++.++.+.
T Consensus       109 la~~~~h-~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~  187 (1049)
T KOG0307|consen  109 LATKSKH-TGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAV  187 (1049)
T ss_pred             Hhhhccc-CCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCce
Confidence            4455677 99999999999654 999999999999999987544         56799999985 456788888899999


Q ss_pred             EEeCCCCee
Q psy16880         74 MWNLNSKLC   82 (84)
Q Consensus        74 ~~~~~~~~~   82 (84)
                      +||++.++.
T Consensus       188 iWDlr~~~p  196 (1049)
T KOG0307|consen  188 IWDLRKKKP  196 (1049)
T ss_pred             eccccCCCc
Confidence            999997764

>KOG2096|consensus

Probab=99.13  E-value=8.1e-10  Score=60.78  Aligned_cols=76  Identities=14%  Similarity=0.281  Sum_probs=61.7

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------------CCCEEEEEEccCCCEEEEe
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------------DSAVRSISFCSKQRTLISG   66 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------------~~~v~~~~~~~~~~~~~~~   66 (84)
                      |+.+..+... ...-...+.+|+|+++++++....+.+|.+--.+-               ...|...+|+++.+.++++
T Consensus       218 Gq~L~~idtn-q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv  296 (420)
T KOG2096|consen  218 GQLLQSIDTN-QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV  296 (420)
T ss_pred             Cceeeeeccc-cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence            5566666554 44445668899999999999999999998742221               6679999999999999999


Q ss_pred             cCCCcEEEEeCC
Q psy16880         67 GDDGSICMWNLN   78 (84)
Q Consensus        67 ~~~~~i~~~~~~   78 (84)
                      +.||++++||..
T Consensus       297 SkDG~wriwdtd  308 (420)
T KOG2096|consen  297 SKDGKWRIWDTD  308 (420)
T ss_pred             ecCCcEEEeecc
Confidence            999999999875

>KOG0299|consensus

Probab=99.13  E-value=9.5e-10  Score=62.42  Aligned_cols=69  Identities=22%  Similarity=0.433  Sum_probs=62.6

Q ss_pred             cCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880         10 HSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus        10 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~   79 (84)
                      .| ...+.+++.++++++|++|+.+..+.+|+..+...       ++.|.+++|......+.+++.|+.+++|++..
T Consensus       200 ~h-~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~  275 (479)
T KOG0299|consen  200 GH-VKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ  275 (479)
T ss_pred             cc-cceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH
Confidence            56 78899999999999999999999999999988766       77899999998888899999999999998754

>KOG0646|consensus

Probab=99.11  E-value=1.1e-09  Score=62.21  Aligned_cols=66  Identities=21%  Similarity=0.519  Sum_probs=61.2

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLN   78 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~   78 (84)
                      +++|.++.-+|.|.+++.|.-.+.+.+|.+.++..       .+.|+++.|+.++.++++++.||.+.+|.+.
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~  153 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT  153 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence            57899999999999999998999999999998877       7889999999999999999999999999753

>KOG0771|consensus

Probab=99.11  E-value=9.3e-10  Score=61.66  Aligned_cols=65  Identities=28%  Similarity=0.583  Sum_probs=57.3

Q ss_pred             EEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880         17 RSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                      .+++++.++..+++++.||.+++|+......       ...|.++.|+|+++.+++.+.+ ...+|+.+++.+
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~  219 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA  219 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch
Confidence            6889999999999999999999999654433       7889999999999999999988 899999988743

>KOG0649|consensus

Probab=99.10  E-value=3.2e-09  Score=56.72  Aligned_cols=79  Identities=20%  Similarity=0.463  Sum_probs=60.8

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----------------CCCEEEEEEccCCCEE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----------------DSAVRSISFCSKQRTL   63 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----------------~~~v~~~~~~~~~~~~   63 (84)
                      +|+..+++++| ++-|.++.--.....+++|+.||.+++||.++.+.                 ...|-+++.  +..++
T Consensus       145 ~G~i~r~~rGH-tDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWl  221 (325)
T KOG0649|consen  145 DGRIQREYRGH-TDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWL  221 (325)
T ss_pred             CCEEEEEEcCC-cceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceE
Confidence            58889999999 99999987755667888999999999999998766                 223444443  45577


Q ss_pred             EEecCCCcEEEEeCCCCeec
Q psy16880         64 ISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        64 ~~~~~~~~i~~~~~~~~~~~   83 (84)
                      ++|+ ...+.+|.++..++.
T Consensus       222 vCGg-Gp~lslwhLrsse~t  240 (325)
T KOG0649|consen  222 VCGG-GPKLSLWHLRSSEST  240 (325)
T ss_pred             EecC-CCceeEEeccCCCce
Confidence            7664 567999999877653

>KOG2445|consensus

Probab=99.09  E-value=2.5e-09  Score=58.47  Aligned_cols=71  Identities=11%  Similarity=0.302  Sum_probs=58.9

Q ss_pred             EeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----------CCCEEEEEEc-c-CCCEEEEecCCCcEE
Q psy16880          7 TFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----------DSAVRSISFC-S-KQRTLISGGDDGSIC   73 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----------~~~v~~~~~~-~-~~~~~~~~~~~~~i~   73 (84)
                      .++.-|.+-|.++.|.+.|+.+++++.|+.+.+||.+....           .+.|..+.|. | .|..+++++.|+++.
T Consensus         7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~   86 (361)
T KOG2445|consen    7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS   86 (361)
T ss_pred             ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence            33332388899999999999999999999999999754443           6778899986 3 578999999999999


Q ss_pred             EEeC
Q psy16880         74 MWNL   77 (84)
Q Consensus        74 ~~~~   77 (84)
                      +|.=
T Consensus        87 iWEE   90 (361)
T KOG2445|consen   87 IWEE   90 (361)
T ss_pred             eeee
Confidence            9953

>KOG0322|consensus

Probab=99.09  E-value=7.5e-10  Score=59.49  Aligned_cols=63  Identities=17%  Similarity=0.361  Sum_probs=57.5

Q ss_pred             CEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880         15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNL   77 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (84)
                      .|..+..-||++.+++++.|+.+++|..++...       ...|.+++|+|+...++.++.|..|.+|++
T Consensus       253 Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  253 GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            356778889999999999999999999988876       788999999999999999999999999986

>KOG0270|consensus

Probab=99.09  E-value=2.8e-10  Score=64.24  Aligned_cols=70  Identities=20%  Similarity=0.405  Sum_probs=60.5

Q ss_pred             ccCCCcCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccC-CCEEEEecCCCcEEEEeCCC
Q psy16880          9 VHSNNSAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSK-QRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus         9 ~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~-~~~~~~~~~~~~i~~~~~~~   79 (84)
                      ++| ++.|..++|+..- ..|++|+.|.++.+||+.++.+       ...|.++.|+|. ...+++|+.|+++.+.|.+.
T Consensus       240 ~gH-Tdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~  318 (463)
T KOG0270|consen  240 SGH-TDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD  318 (463)
T ss_pred             ccc-hHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence            356 8888999998854 6889999999999999998877       778999999985 46778999999999999884

>KOG0639|consensus

Probab=99.08  E-value=6.2e-10  Score=64.30  Aligned_cols=71  Identities=23%  Similarity=0.491  Sum_probs=60.3

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      .+-|.++...|+++.|+.|+.-..+.+||+.....         .-..+.++.+|+.+...+++.||.|.|||+++.-.+
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V  544 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV  544 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence            45688889999999999999999999999976654         234677888999999999999999999999876544

>KOG0268|consensus

Probab=99.08  E-value=1.1e-09  Score=60.88  Aligned_cols=76  Identities=24%  Similarity=0.357  Sum_probs=56.5

Q ss_pred             eEEEeccCCCcCEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC-----------------------------------
Q psy16880          4 IIHTFVHSNNSAVRSISFCSK-QHTLISGGDDGSICMWNLNSKLC-----------------------------------   47 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~-----------------------------------   47 (84)
                      ++..+.-. ...|.+++|+|. ...|+++..|+.+.+||+++..+                                   
T Consensus       179 Pv~smswG-~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~D  257 (433)
T KOG0268|consen  179 PVSSMSWG-ADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYD  257 (433)
T ss_pred             ccceeecC-CCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehh
Confidence            33444433 456778888884 45677777888888888886654                                   


Q ss_pred             --------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCC
Q psy16880         48 --------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSK   80 (84)
Q Consensus        48 --------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   80 (84)
                                    .+.|..+.|+|.|..+++++.|.+|++|..+.+
T Consensus       258 mR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~  304 (433)
T KOG0268|consen  258 MRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG  304 (433)
T ss_pred             hhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCC
Confidence                          346778889999999999999999999977644

>KOG0301|consensus

Probab=99.08  E-value=1.3e-09  Score=64.49  Aligned_cols=75  Identities=27%  Similarity=0.586  Sum_probs=60.4

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      |++++++.+| ++.|..+++-+++ .|+++++||.+++|++.....      .+.+++++...+...+++++.|+++++|
T Consensus       169 ~~~l~tf~gH-tD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW  246 (745)
T KOG0301|consen  169 GTLLKTFSGH-TDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIW  246 (745)
T ss_pred             Cchhhhhccc-hhheeeeEEecCC-CeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEe
Confidence            5677888898 9999999888644 566888999999999955444      6778888876677788999999999999


Q ss_pred             eCC
Q psy16880         76 NLN   78 (84)
Q Consensus        76 ~~~   78 (84)
                      +..
T Consensus       247 ~~~  249 (745)
T KOG0301|consen  247 KKD  249 (745)
T ss_pred             ecC
Confidence            754

>KOG1036|consensus

Probab=99.07  E-value=6.7e-09  Score=56.63  Aligned_cols=72  Identities=19%  Similarity=0.374  Sum_probs=60.4

Q ss_pred             EeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCC
Q psy16880          7 TFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSK   80 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   80 (84)
                      .+..| ...|.+|.+.+....+++|+.|+.+++||.+....      ...|.++...  +..+++++.+..+.+||+++.
T Consensus        89 ~igth-~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~  165 (323)
T KOG1036|consen   89 QIGTH-DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNL  165 (323)
T ss_pred             eeccC-CCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEcccc
Confidence            34456 88999999999889999999999999999986444      5678888765  567889899999999999876


Q ss_pred             e
Q psy16880         81 L   81 (84)
Q Consensus        81 ~   81 (84)
                      .
T Consensus       166 ~  166 (323)
T KOG1036|consen  166 D  166 (323)
T ss_pred             c
Confidence            5

>KOG0288|consensus

Probab=99.06  E-value=8.6e-10  Score=62.05  Aligned_cols=61  Identities=20%  Similarity=0.482  Sum_probs=55.3

Q ss_pred             CEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880         15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      .+..+.|+|++.++++|+.++.+.+|+..+++.         ...|.+++|+|.|..+++++.+..+.+|
T Consensus       389 DwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  389 DWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             ccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            467788999999999999999999999998877         3369999999999999999999999998

>KOG4328|consensus

Probab=99.06  E-value=9.1e-10  Score=62.57  Aligned_cols=73  Identities=16%  Similarity=0.254  Sum_probs=60.3

Q ss_pred             EEEeccCCCcCEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC-----------CCCEEEEEEccCCCEEEEecCCCcE
Q psy16880          5 IHTFVHSNNSAVRSISFCSK-QHTLISGGDDGSICMWNLNSKLC-----------DSAVRSISFCSKQRTLISGGDDGSI   72 (84)
Q Consensus         5 ~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~i   72 (84)
                      ...++-| ...|..|+++|. ..++++++.|+..++||++....           ...|.+..|+|.+-.+++-+.|+.|
T Consensus       315 ~~~~~lh-~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~I  393 (498)
T KOG4328|consen  315 YENLRLH-KKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEI  393 (498)
T ss_pred             chhhhhh-hcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCce
Confidence            3344556 678999999995 56889999999999999975533           5578999999987779999999999


Q ss_pred             EEEeCC
Q psy16880         73 CMWNLN   78 (84)
Q Consensus        73 ~~~~~~   78 (84)
                      ++||..
T Consensus       394 Rv~dss  399 (498)
T KOG4328|consen  394 RVFDSS  399 (498)
T ss_pred             EEeecc
Confidence            999973

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=99.06  E-value=4.7e-09  Score=61.18  Aligned_cols=66  Identities=17%  Similarity=0.351  Sum_probs=58.9

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----CCCEEEEEEccCCCEEEEecCCCcEEEEeCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----DSAVRSISFCSKQRTLISGGDDGSICMWNLN   78 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~   78 (84)
                      ++.+.+++++|+...++.|+.||.+.+||......     .-.+..++|+|++.++++++..|.+.+||..
T Consensus       259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             CCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            56788999999999999999999999999876544     5567889999999999999999999999975

>KOG3881|consensus

Probab=99.06  E-value=2.6e-09  Score=59.76  Aligned_cols=80  Identities=15%  Similarity=0.255  Sum_probs=70.3

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSICM   74 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~   74 (84)
                      +++..+.-. +.++.++...|.+.++++|...+.+..||++.+..        .+.++.+..+|+.+.+++++-|+.++|
T Consensus       238 RPV~~fd~~-E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRI  316 (412)
T KOG3881|consen  238 RPVAQFDFL-ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRI  316 (412)
T ss_pred             cceeEeccc-cCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEE
Confidence            356666666 78889999999999999999999999999998766        678999999999999999999999999


Q ss_pred             EeCCCCeec
Q psy16880         75 WNLNSKLCD   83 (84)
Q Consensus        75 ~~~~~~~~~   83 (84)
                      +|..+.+.+
T Consensus       317 hD~ktrkll  325 (412)
T KOG3881|consen  317 HDIKTRKLL  325 (412)
T ss_pred             eecccchhh
Confidence            999986654

>KOG0321|consensus

Probab=99.05  E-value=6.1e-10  Score=65.43  Aligned_cols=71  Identities=21%  Similarity=0.499  Sum_probs=60.8

Q ss_pred             ccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccC-CCEEEEecCCCcEEEEeCC
Q psy16880          9 VHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSK-QRTLISGGDDGSICMWNLN   78 (84)
Q Consensus         9 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~-~~~~~~~~~~~~i~~~~~~   78 (84)
                      ..| .+.|+++.|.|....|++++.|..+++||+.+...         ...|..++|.|. ...+++|+.|+.|.|||++
T Consensus        97 ~aH-~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R  175 (720)
T KOG0321|consen   97 LAH-KNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR  175 (720)
T ss_pred             ccc-cceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence            346 89999999999778999999999999999987765         567888999984 4677899999999999987


Q ss_pred             CC
Q psy16880         79 SK   80 (84)
Q Consensus        79 ~~   80 (84)
                      ..
T Consensus       176 ~n  177 (720)
T KOG0321|consen  176 CN  177 (720)
T ss_pred             cc
Confidence            54

>KOG0270|consensus

Probab=99.05  E-value=7.2e-09  Score=58.79  Aligned_cols=79  Identities=16%  Similarity=0.407  Sum_probs=66.6

Q ss_pred             CCceEEEeccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCC-EEEEecCCCc
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQR-TLISGGDDGS   71 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~-~~~~~~~~~~   71 (84)
                      +|++..++..| .+.|.++.|+| ....|++|+.++++.+.|.+....       .+.|-.+.|.|... .++++..||+
T Consensus       275 ~g~p~~s~~~~-~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~  353 (463)
T KOG0270|consen  275 TGKPKSSITHH-GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGT  353 (463)
T ss_pred             CCCcceehhhc-CCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCce
Confidence            47888888877 99999999999 568999999999999999985433       67899999998664 5566778899


Q ss_pred             EEEEeCCCC
Q psy16880         72 ICMWNLNSK   80 (84)
Q Consensus        72 i~~~~~~~~   80 (84)
                      ++-+|.|+.
T Consensus       354 v~~~D~R~~  362 (463)
T KOG0270|consen  354 VYYFDIRNP  362 (463)
T ss_pred             EEeeecCCC
Confidence            999999865

>KOG1538|consensus

Probab=99.04  E-value=3.2e-09  Score=63.36  Aligned_cols=76  Identities=20%  Similarity=0.365  Sum_probs=64.9

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------------------------------
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------------------------------   47 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------------------------------   47 (84)
                      .|..++++++| ++.|.+++|+.+|..+++|+.|..+.+|.......                                 
T Consensus        42 dG~llqtLKgH-KDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS  120 (1081)
T KOG1538|consen   42 DGTLLQPLKGH-KDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWS  120 (1081)
T ss_pred             Ccccccccccc-cceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccC
Confidence            36778899999 99999999999999999999999999997653322                                 


Q ss_pred             -----------CCCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880         48 -----------DSAVRSISFCSKQRTLISGGDDGSICMWNL   77 (84)
Q Consensus        48 -----------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (84)
                                 ...+.+.+|..+|.+++.|-.+|+|.+-+-
T Consensus       121 ~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk  161 (1081)
T KOG1538|consen  121 PEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK  161 (1081)
T ss_pred             hhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC
Confidence                       456788889999999999999999988753

>KOG0299|consensus

Probab=99.03  E-value=5.1e-09  Score=59.58  Aligned_cols=78  Identities=17%  Similarity=0.369  Sum_probs=66.3

Q ss_pred             EEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------------------------CCCEEEEEEccCC
Q psy16880          6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------------------------DSAVRSISFCSKQ   60 (84)
Q Consensus         6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------------------------~~~v~~~~~~~~~   60 (84)
                      +.+..| .-.+.++..+|+.++.++++.++.+.-|++.++..                         ...+.+++.++++
T Consensus       136 ~~~~~H-~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  136 RVIGKH-QLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             eeeccc-cCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            344556 77889999999999999999999999998876542                         2468899999999


Q ss_pred             CEEEEecCCCcEEEEeCCCCeecC
Q psy16880         61 RTLISGGDDGSICMWNLNSKLCDR   84 (84)
Q Consensus        61 ~~~~~~~~~~~i~~~~~~~~~~~~   84 (84)
                      +++++++.|..|.||+..+.+.++
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~  238 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVK  238 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhh
Confidence            999999999999999999887653

>KOG0649|consensus

Probab=99.03  E-value=3e-09  Score=56.83  Aligned_cols=70  Identities=17%  Similarity=0.364  Sum_probs=57.1

Q ss_pred             cCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      -.|.+|...|....++.++.|+.+..||+.++..       ...+.++.-......+++|+.||++++||.++.+++
T Consensus       115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v  191 (325)
T KOG0649|consen  115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHV  191 (325)
T ss_pred             CccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEecccccee
Confidence            3578999998766666666899999999998876       456888877555567999999999999999998875

>KOG2055|consensus

Probab=99.03  E-value=3.3e-09  Score=60.51  Aligned_cols=76  Identities=26%  Similarity=0.573  Sum_probs=61.1

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEE--EEEccCCCEEEEecCCCcEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRS--ISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~--~~~~~~~~~~~~~~~~~~i~   73 (84)
                      ++.+..+..  ++.|..++|+.++..+++.+.+|.|.+||++....      .+.|++  ++.++++.++++|+..|.+.
T Consensus       335 ~eli~s~Ki--eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVN  412 (514)
T KOG2055|consen  335 KELITSFKI--EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVN  412 (514)
T ss_pred             hhhhheeee--ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEE
Confidence            344445544  68899999999999999999999999999998766      455544  55568999999999999999


Q ss_pred             EEeCCC
Q psy16880         74 MWNLNS   79 (84)
Q Consensus        74 ~~~~~~   79 (84)
                      |||..+
T Consensus       413 IYd~~s  418 (514)
T KOG2055|consen  413 IYDGNS  418 (514)
T ss_pred             Eeccch
Confidence            998653

>KOG0321|consensus

Probab=99.02  E-value=2.3e-09  Score=63.11  Aligned_cols=73  Identities=27%  Similarity=0.509  Sum_probs=56.1

Q ss_pred             eccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC--------------------------------------C
Q psy16880          8 FVHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC--------------------------------------D   48 (84)
Q Consensus         8 ~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~--------------------------------------~   48 (84)
                      +-+| +..|.+++|.+ +...|++|+.|+.+.+||++-...                                      .
T Consensus       140 ~~GH-~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~  218 (720)
T KOG0321|consen  140 NLGH-TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIF  218 (720)
T ss_pred             eccc-ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCcee
Confidence            5677 89999999999 567999999999999999975432                                      2


Q ss_pred             CCEEEEEEccCCCEEEEecC-CCcEEEEeCCCCee
Q psy16880         49 SAVRSISFCSKQRTLISGGD-DGSICMWNLNSKLC   82 (84)
Q Consensus        49 ~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~   82 (84)
                      +.|+.+.| .+...+++++. |+.|++||++..++
T Consensus       219 ssvTvv~f-kDe~tlaSaga~D~~iKVWDLRk~~~  252 (720)
T KOG0321|consen  219 SSVTVVLF-KDESTLASAGAADSTIKVWDLRKNYT  252 (720)
T ss_pred             eeeEEEEE-eccceeeeccCCCcceEEEeeccccc
Confidence            23444444 45566777766 99999999987654

>KOG2048|consensus

Probab=99.01  E-value=7.6e-09  Score=61.14  Aligned_cols=69  Identities=26%  Similarity=0.445  Sum_probs=57.5

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------------CCCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------------DSAVRSISFCSKQRTLISGGDDGSICMWNL   77 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (84)
                      +++|.+++|++++..+++|+.|+.+++||...+..               +.-|.++.|-.++ .+++|...|++.+||.
T Consensus       154 ~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~  232 (691)
T KOG2048|consen  154 KSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDS  232 (691)
T ss_pred             cceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcc
Confidence            68999999999999999999999999999986644               2246777776555 5889999999999998


Q ss_pred             CCCee
Q psy16880         78 NSKLC   82 (84)
Q Consensus        78 ~~~~~   82 (84)
                      ..+..
T Consensus       233 ~~gTL  237 (691)
T KOG2048|consen  233 IFGTL  237 (691)
T ss_pred             cCcch
Confidence            76543

>KOG0280|consensus

Probab=99.01  E-value=7e-09  Score=56.49  Aligned_cols=74  Identities=23%  Similarity=0.370  Sum_probs=59.5

Q ss_pred             EEeccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEcc-CCCEEEEecCCCcEEE
Q psy16880          6 HTFVHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCS-KQRTLISGGDDGSICM   74 (84)
Q Consensus         6 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~-~~~~~~~~~~~~~i~~   74 (84)
                      ++.+.| +.+++..+|+. +...+.+|+.|+.+..||++.+..         ...|.++.-+| .+..+++|+.|..|++
T Consensus       159 q~wk~H-e~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~  237 (339)
T KOG0280|consen  159 QTWKVH-EFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRV  237 (339)
T ss_pred             cccccc-ceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceee
Confidence            355667 77888888887 557899999999999999994433         45677777764 6789999999999999


Q ss_pred             EeCCCC
Q psy16880         75 WNLNSK   80 (84)
Q Consensus        75 ~~~~~~   80 (84)
                      ||.++.
T Consensus       238 ~DtRnm  243 (339)
T KOG0280|consen  238 LDTRNM  243 (339)
T ss_pred             eehhcc
Confidence            999853

>KOG2321|consensus

Probab=99.01  E-value=5e-09  Score=61.31  Aligned_cols=81  Identities=19%  Similarity=0.384  Sum_probs=68.4

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------------------CCCEEEEEEccCCCEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------------------DSAVRSISFCSKQRTL   63 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------------------~~~v~~~~~~~~~~~~   63 (84)
                      |+.+..++.. .+.+.++..++...++++|..++.+.+||.+....                  ...|+++.|+.++-.+
T Consensus       165 GrfL~P~~~~-~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~  243 (703)
T KOG2321|consen  165 GRFLNPFETD-SGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHV  243 (703)
T ss_pred             cccccccccc-cccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeE
Confidence            5556666665 68899999999999999999999999999986654                  1248999999989889


Q ss_pred             EEecCCCcEEEEeCCCCeec
Q psy16880         64 ISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        64 ~~~~~~~~i~~~~~~~~~~~   83 (84)
                      ++|..+|.+.+||+++.+++
T Consensus       244 aVGts~G~v~iyDLRa~~pl  263 (703)
T KOG2321|consen  244 AVGTSTGSVLIYDLRASKPL  263 (703)
T ss_pred             EeeccCCcEEEEEcccCCce
Confidence            99999999999999987764

>KOG3914|consensus

Probab=99.00  E-value=3.4e-09  Score=59.30  Aligned_cols=75  Identities=17%  Similarity=0.302  Sum_probs=61.4

Q ss_pred             eccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880          8 FVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus         8 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~   79 (84)
                      +-+| .+.+..++|+||.++++++..|..+++-.+.....        ..-|..++.-++. .+++++.|+++++||+.+
T Consensus       147 ~lGh-vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~s  224 (390)
T KOG3914|consen  147 ILGH-VSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITS  224 (390)
T ss_pred             hhhh-hhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEeccc
Confidence            3467 88899999999999999999999999866544333        4568888887765 488999999999999999


Q ss_pred             CeecC
Q psy16880         80 KLCDR   84 (84)
Q Consensus        80 ~~~~~   84 (84)
                      +++++
T Consensus       225 gk~L~  229 (390)
T KOG3914|consen  225 GKLLD  229 (390)
T ss_pred             CCccc
Confidence            88753

>KOG4227|consensus

Probab=99.00  E-value=9.9e-09  Score=58.13  Aligned_cols=79  Identities=18%  Similarity=0.200  Sum_probs=68.5

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      +++.....||.+.|++++|.....++.+|..++++.+.|+.+...         ++.|+++..+|....+++++.++.+.
T Consensus        95 KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~  174 (609)
T KOG4227|consen   95 KPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVS  174 (609)
T ss_pred             CCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEE
Confidence            556666666579999999999999999999999999999987655         56899999999888999999999999


Q ss_pred             EEeCCCCe
Q psy16880         74 MWNLNSKL   81 (84)
Q Consensus        74 ~~~~~~~~   81 (84)
                      +||.+..+
T Consensus       175 ~~D~Rd~~  182 (609)
T KOG4227|consen  175 FIDNRDRQ  182 (609)
T ss_pred             EEeccCCC
Confidence            99987654

>KOG1188|consensus

Probab=98.99  E-value=1.2e-08  Score=56.42  Aligned_cols=73  Identities=18%  Similarity=0.309  Sum_probs=61.2

Q ss_pred             ccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCC-CEEEEecCCCcEEEEe
Q psy16880          9 VHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQ-RTLISGGDDGSICMWN   76 (84)
Q Consensus         9 ~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~-~~~~~~~~~~~i~~~~   76 (84)
                      +.| .+.|++++|+| +..+|++|+-||.+.+||+.....          ...|..+.|...+ +.+.+-++.....+|+
T Consensus       162 eSH-~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~e  240 (376)
T KOG1188|consen  162 ESH-NDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYE  240 (376)
T ss_pred             hhc-cCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEE
Confidence            445 89999999999 568999999999999999986654          5679999998765 4578888899999999


Q ss_pred             CCCCee
Q psy16880         77 LNSKLC   82 (84)
Q Consensus        77 ~~~~~~   82 (84)
                      ++.+.+
T Consensus       241 le~~~~  246 (376)
T KOG1188|consen  241 LEDGSE  246 (376)
T ss_pred             ccCCCh
Confidence            886653

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.97  E-value=4.5e-08  Score=53.08  Aligned_cols=79  Identities=14%  Similarity=0.237  Sum_probs=58.9

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEE-EEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEE-ecCCCcEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTL-ISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLIS-GGDDGSIC   73 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~-~~~~~~i~   73 (84)
                      ++++..++.+ . .+..++|+|++..+ +++..++.+.+||..+...      ...+..+.|+|+++.++. +..++.+.
T Consensus        21 ~~~~~~~~~~-~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~   98 (300)
T TIGR03866        21 LEVTRTFPVG-Q-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVT   98 (300)
T ss_pred             CceEEEEECC-C-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEE
Confidence            5566676654 3 35679999999866 5677889999999876544      334677889999886654 45678999


Q ss_pred             EEeCCCCee
Q psy16880         74 MWNLNSKLC   82 (84)
Q Consensus        74 ~~~~~~~~~   82 (84)
                      +||+.+.+.
T Consensus        99 ~~d~~~~~~  107 (300)
T TIGR03866        99 VIDIETRKV  107 (300)
T ss_pred             EEECCCCeE
Confidence            999987654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0650|consensus

Probab=98.95  E-value=1.9e-08  Score=59.25  Aligned_cols=72  Identities=25%  Similarity=0.428  Sum_probs=56.9

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCE-EEEecCCCcEEEEe
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRT-LISGGDDGSICMWN   76 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~-~~~~~~~~~i~~~~   76 (84)
                      +-..+.+| ++.|.+++..|.|..|++|+.+|.+++|.+.++.+      ...|.+++|+|.+.. ++.+.....+.+-+
T Consensus       392 ~~lvyrGH-tg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn  470 (733)
T KOG0650|consen  392 CALVYRGH-TGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVN  470 (733)
T ss_pred             eeeeEecc-CCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence            34567888 99999999999999999999999999999998877      778999999997642 23333333344443

>KOG2055|consensus

Probab=98.95  E-value=1.6e-08  Score=57.84  Aligned_cols=71  Identities=14%  Similarity=0.382  Sum_probs=62.1

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCC-EEEEecCCCcEEEEeCCCCee
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQR-TLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~   82 (84)
                      .+.|.+|.|+|....+++++.|+.+++|.+.....         ..+|.+.+|.|+|. .+++++....++.||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            47899999999999999999999999999875433         67899999999998 788888889999999987764


Q ss_pred             c
Q psy16880         83 D   83 (84)
Q Consensus        83 ~   83 (84)
                      .
T Consensus       293 ~  293 (514)
T KOG2055|consen  293 T  293 (514)
T ss_pred             c
Confidence            3

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.93  E-value=5.1e-08  Score=55.29  Aligned_cols=81  Identities=10%  Similarity=0.217  Sum_probs=59.0

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEec-CCCcEEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGG-DDGSICM   74 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~-~~~~i~~   74 (84)
                      .+.+.+++.. ......+.++|+++++..++.++.+.++|+.+.+.      .....++++++++++++++. ..+.+.+
T Consensus        26 ~~~~~~i~~~-~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v  104 (369)
T PF02239_consen   26 NKVVARIPTG-GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSV  104 (369)
T ss_dssp             -SEEEEEE-S-TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEE
T ss_pred             CeEEEEEcCC-CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeE
Confidence            4566777664 34445577899999998889999999999988776      56678999999999888775 4789999


Q ss_pred             EeCCCCeec
Q psy16880         75 WNLNSKLCD   83 (84)
Q Consensus        75 ~~~~~~~~~   83 (84)
                      +|.++.+.+
T Consensus       105 ~D~~tle~v  113 (369)
T PF02239_consen  105 IDAETLEPV  113 (369)
T ss_dssp             EETTT--EE
T ss_pred             eccccccce
Confidence            999887765

...

>KOG1332|consensus

Probab=98.93  E-value=5.6e-09  Score=55.72  Aligned_cols=76  Identities=13%  Similarity=0.249  Sum_probs=61.9

Q ss_pred             EEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEc-c-CCCEEEEecCCCcEE
Q psy16880          6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFC-S-KQRTLISGGDDGSIC   73 (84)
Q Consensus         6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~-~-~~~~~~~~~~~~~i~   73 (84)
                      +++...|++.|......--|.+|++++.|+.+++++.+....          +++|..++|. | .|.++++++.|+.+.
T Consensus         4 q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI   83 (299)
T KOG1332|consen    4 QTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI   83 (299)
T ss_pred             eehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence            334333378887777777899999999999999999975543          7899999996 4 789999999999999


Q ss_pred             EEeCCCCe
Q psy16880         74 MWNLNSKL   81 (84)
Q Consensus        74 ~~~~~~~~   81 (84)
                      +|.-.++.
T Consensus        84 iWke~~g~   91 (299)
T KOG1332|consen   84 IWKEENGR   91 (299)
T ss_pred             EEecCCCc
Confidence            99877664

>KOG0301|consensus

Probab=98.92  E-value=2.9e-08  Score=59.05  Aligned_cols=76  Identities=20%  Similarity=0.436  Sum_probs=64.5

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      +|.++.++.+| ++-|.+++...+...+++++.|+.+++|+......     ...+.++.+-+++. +++|+.||.+++|
T Consensus       208 ~ge~l~~~~gh-tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf  285 (745)
T KOG0301|consen  208 DGEVLLEMHGH-TNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF  285 (745)
T ss_pred             cCceeeeeecc-ceEEEEEEecCCCCeEEEecCCceEEEeecCceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence            57889999999 99999999888899999999999999999873322     34788888888887 7788889999999


Q ss_pred             eCC
Q psy16880         76 NLN   78 (84)
Q Consensus        76 ~~~   78 (84)
                      ...
T Consensus       286 T~~  288 (745)
T KOG0301|consen  286 TVD  288 (745)
T ss_pred             Eec
Confidence            764

>KOG1274|consensus

Probab=98.89  E-value=3.6e-08  Score=60.08  Aligned_cols=71  Identities=21%  Similarity=0.426  Sum_probs=62.7

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      +-++.+++++-+|..++.|+.|-.|++-+......       ..+|.++.|.|++.++++.+.||.+++|++.++.+.
T Consensus        96 tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~  173 (933)
T KOG1274|consen   96 TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILS  173 (933)
T ss_pred             eccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhh
Confidence            45688999999999999999999999988866544       789999999999999999999999999999887643

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.88  E-value=1e-07  Score=51.74  Aligned_cols=67  Identities=10%  Similarity=0.179  Sum_probs=52.1

Q ss_pred             EEEEEccCCCEEEE-eCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEe-cCCCcEEEEeCCCCeec
Q psy16880         17 RSISFCSKQHTLIS-GGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISG-GDDGSICMWNLNSKLCD   83 (84)
Q Consensus        17 ~~~~~~~~~~~l~~-~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~   83 (84)
                      ..++|+|+++.++. ...+..+.+||..+...      ...+.+++|+|++..++++ ..++.|.+||+.+++++
T Consensus       210 ~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~  284 (300)
T TIGR03866       210 VGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI  284 (300)
T ss_pred             cceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence            35788999987544 45566799999976554      4568899999999988775 45899999999988764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2106|consensus

Probab=98.88  E-value=8.6e-08  Score=55.67  Aligned_cols=66  Identities=11%  Similarity=0.270  Sum_probs=51.8

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~   79 (84)
                      ..+..+.+|+|.+ .++.|...|...+.|..+...      ..+++++.|+|+|.+++.++.|+.|.+|.+..
T Consensus       407 ~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~  478 (626)
T KOG2106|consen  407 EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA  478 (626)
T ss_pred             cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence            4556677777777 777777777777777665433      67899999999999999999999999998753

>KOG4378|consensus

Probab=98.86  E-value=3.6e-08  Score=57.20  Aligned_cols=66  Identities=23%  Similarity=0.489  Sum_probs=55.0

Q ss_pred             EEEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEcc-CCCEEEEecCCCcEEEEeCCCCe
Q psy16880         16 VRSISFCSKQH-TLISGGDDGSICMWNLNSKLC--------DSAVRSISFCS-KQRTLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        16 v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~   81 (84)
                      |.-++|+|..+ +|.+++.+|.|.+||......        ..+..+++|+| +..++++++.|..|.+||.+..+
T Consensus       167 vRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~  242 (673)
T KOG4378|consen  167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA  242 (673)
T ss_pred             EEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc
Confidence            55789999765 567889999999999987655        66789999998 45677899999999999998654

>KOG2110|consensus

Probab=98.85  E-value=1e-07  Score=53.34  Aligned_cols=71  Identities=10%  Similarity=0.166  Sum_probs=55.5

Q ss_pred             CcCEEEEEEccCCCEEEEe--CCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCc-EEEEeCCCCee
Q psy16880         13 NSAVRSISFCSKQHTLISG--GDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGS-ICMWNLNSKLC   82 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~--~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~   82 (84)
                      ...+.+++.+..+.+++-.  ...|.+.+||..+...       ++.+.+++|+++|.++++++..|+ |+++.+.+++.
T Consensus       129 ~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k  208 (391)
T KOG2110|consen  129 PKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK  208 (391)
T ss_pred             ccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE
Confidence            3445566655555677644  3467999999987665       889999999999999999999887 78999988775


Q ss_pred             c
Q psy16880         83 D   83 (84)
Q Consensus        83 ~   83 (84)
                      +
T Consensus       209 l  209 (391)
T KOG2110|consen  209 L  209 (391)
T ss_pred             e
Confidence            4

>KOG0974|consensus

Probab=98.85  E-value=7.3e-08  Score=59.27  Aligned_cols=70  Identities=23%  Similarity=0.400  Sum_probs=62.3

Q ss_pred             EeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEEEEeCC
Q psy16880          7 TFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSICMWNLN   78 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~   78 (84)
                      .+.+| ++.|+.+.++.+|+++++.+.|+.+++|++.+.+.        ...+..++|.|+  .+++++.|.+.++|+..
T Consensus       170 ~l~GH-eG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~  246 (967)
T KOG0974|consen  170 RLKGH-EGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN  246 (967)
T ss_pred             eeccc-CCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc
Confidence            35678 99999999999999999999999999999987766        678899999988  79999999999999654


Q ss_pred             C
Q psy16880         79 S   79 (84)
Q Consensus        79 ~   79 (84)
                      .
T Consensus       247 ~  247 (967)
T KOG0974|consen  247 G  247 (967)
T ss_pred             c
Confidence            3

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.85  E-value=1.9e-08  Score=39.28  Aligned_cols=29  Identities=34%  Similarity=0.709  Sum_probs=27.5

Q ss_pred             CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880         48 DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus        48 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      ...|.+++|+|++..+++++.|+.|++||
T Consensus        11 ~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen   11 SSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             SSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            57899999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0290|consensus

Probab=98.85  E-value=5.1e-08  Score=53.33  Aligned_cols=70  Identities=14%  Similarity=0.282  Sum_probs=55.2

Q ss_pred             ceEEEeccCCCcCEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC------------CCCEEEEEEcc-CCCEEEEecC
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSK-QHTLISGGDDGSICMWNLNSKLC------------DSAVRSISFCS-KQRTLISGGD   68 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~------------~~~v~~~~~~~-~~~~~~~~~~   68 (84)
                      .++..+++| .+.|..++|.|. ...+++++.|....+||+.....            ++.|..++|++ +..+++.+. 
T Consensus       278 tpva~L~~H-~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~-  355 (364)
T KOG0290|consen  278 TPVARLRNH-QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF-  355 (364)
T ss_pred             cceehhhcC-cccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe-
Confidence            467788899 999999999995 57999999999999999976543            77899999996 445665553 


Q ss_pred             CCcEEE
Q psy16880         69 DGSICM   74 (84)
Q Consensus        69 ~~~i~~   74 (84)
                      ++.+.+
T Consensus       356 ~kklei  361 (364)
T KOG0290|consen  356 GKKLEI  361 (364)
T ss_pred             cCeeeE
Confidence            444443

>KOG1524|consensus

Probab=98.84  E-value=5.4e-09  Score=60.95  Aligned_cols=77  Identities=23%  Similarity=0.473  Sum_probs=60.2

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------------------------------
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------------------------------   47 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------------------------------   47 (84)
                      |+..+.++.| .+.+.+-.|+|+|.-|++++.||.+++|.-...-.                                  
T Consensus        94 ~rVE~sv~AH-~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKp  172 (737)
T KOG1524|consen   94 ARVERSISAH-AAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKP  172 (737)
T ss_pred             chhhhhhhhh-hhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEee
Confidence            4445566677 88899999999999999999999999997542211                                  


Q ss_pred             -------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880         48 -------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus        48 -------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~   79 (84)
                                   .+.|.++.|++....+++++.|-..++||...
T Consensus       173 L~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G  217 (737)
T KOG1524|consen  173 LAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG  217 (737)
T ss_pred             cccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC
Confidence                         45677788888888888888888888888643

>KOG2106|consensus

Probab=98.83  E-value=1.9e-07  Score=54.32  Aligned_cols=66  Identities=18%  Similarity=0.374  Sum_probs=59.0

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcEEEEeCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSICMWNLN   78 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~   78 (84)
                      ..++.+|+|+|+|.+|+.|+.|+.+.+|.+.....         .+.|.++.|+++++++.+.+.|-.|..|...
T Consensus       447 ~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~  521 (626)
T KOG2106|consen  447 NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS  521 (626)
T ss_pred             CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence            67899999999999999999999999998865443         6789999999999999999999999999544

>KOG0771|consensus

Probab=98.82  E-value=4.6e-08  Score=55.10  Aligned_cols=72  Identities=22%  Similarity=0.360  Sum_probs=62.2

Q ss_pred             cCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------------------------------------------
Q psy16880         10 HSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------------------------------------------   47 (84)
Q Consensus        10 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------------------------------------------   47 (84)
                      .| .+.|.++.|+|+++++++-+.+ ..++|+.+++..                                          
T Consensus       184 ~~-~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~  261 (398)
T KOG0771|consen  184 AH-HAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLC  261 (398)
T ss_pred             hh-cCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEE
Confidence            35 7889999999999999999999 899999987721                                          


Q ss_pred             -------------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         48 -------------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        48 -------------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                                         ...|++++.+++|++++.++.+|.+.+++..+.+++
T Consensus       262 ~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~  316 (398)
T KOG0771|consen  262 DISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRL  316 (398)
T ss_pred             EeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeee
Confidence                               236899999999999999999999999998877654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.82  E-value=4.7e-07  Score=50.20  Aligned_cols=79  Identities=29%  Similarity=0.566  Sum_probs=63.9

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCC-CCcEEEEeCCCCCC-------CCCEEEEEEccCCC-EEEEecCCCcEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGD-DGSICMWNLNSKLC-------DSAVRSISFCSKQR-TLISGGDDGSIC   73 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~-~~~~~~~~~~i~   73 (84)
                      .....+..| ...|..++|+|++..++.++. ++.+.+|+......       ...+.++.|+|++. .+++++.|+.+.
T Consensus       146 ~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~  224 (466)
T COG2319         146 KLIRTLEGH-SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR  224 (466)
T ss_pred             eEEEEEecC-cccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence            455667777 889999999999998888885 99999999986333       46899999999887 555558899999


Q ss_pred             EEeCCCCee
Q psy16880         74 MWNLNSKLC   82 (84)
Q Consensus        74 ~~~~~~~~~   82 (84)
                      +||...+..
T Consensus       225 ~wd~~~~~~  233 (466)
T COG2319         225 LWDLSTGKL  233 (466)
T ss_pred             EEECCCCcE
Confidence            998775543

>KOG0642|consensus

Probab=98.82  E-value=1.3e-08  Score=59.20  Aligned_cols=71  Identities=30%  Similarity=0.570  Sum_probs=61.7

Q ss_pred             EeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------------CCCEEEEEEccCCCEEEEecCCCc
Q psy16880          7 TFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------------DSAVRSISFCSKQRTLISGGDDGS   71 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------------~~~v~~~~~~~~~~~~~~~~~~~~   71 (84)
                      ++..| ...|..+.+++....|++++.++.+.+|.+.....               +++|-|+++.+++..+++++.||.
T Consensus       289 tl~s~-~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  289 TLRSH-DDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             eeecc-hhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence            45566 78899999999999999999999999999933211               789999999999999999999999


Q ss_pred             EEEEeCC
Q psy16880         72 ICMWNLN   78 (84)
Q Consensus        72 i~~~~~~   78 (84)
                      |+.|++.
T Consensus       368 I~~w~~p  374 (577)
T KOG0642|consen  368 IRCWNLP  374 (577)
T ss_pred             eeeeccC
Confidence            9999664

>KOG1240|consensus

Probab=98.82  E-value=8.6e-08  Score=60.30  Aligned_cols=77  Identities=25%  Similarity=0.499  Sum_probs=63.9

Q ss_pred             CCceEEEeccCCCcCEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC--------------CCCEEEEEEccCCCEEEE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSK-QHTLISGGDDGSICMWNLNSKLC--------------DSAVRSISFCSKQRTLIS   65 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~--------------~~~v~~~~~~~~~~~~~~   65 (84)
                      .|.++..+..| ...+..++.++. +.+|++|+.||.|++|+.+....              ++.+..+...+.+..+++
T Consensus      1037 ~G~lVAhL~Eh-s~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1037 RGILVAHLHEH-SSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred             cceEeehhhhc-cccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence            36777888777 777778888774 59999999999999999974432              567888888899999999


Q ss_pred             ecCCCcEEEEeCC
Q psy16880         66 GGDDGSICMWNLN   78 (84)
Q Consensus        66 ~~~~~~i~~~~~~   78 (84)
                      ++.||.|.+.++.
T Consensus      1116 ~t~DG~v~~~~id 1128 (1431)
T KOG1240|consen 1116 STKDGSVRVLRID 1128 (1431)
T ss_pred             EcCCCeEEEEEcc
Confidence            9999999998765

>KOG2139|consensus

Probab=98.80  E-value=1.4e-07  Score=52.96  Aligned_cols=65  Identities=14%  Similarity=0.300  Sum_probs=55.7

Q ss_pred             CcCEEEEEEccCCCEEEEeCC-CCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880         13 NSAVRSISFCSKQHTLISGGD-DGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNL   77 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~-~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (84)
                      ..+|.+|.|.++|..+++++. +..+.+||..++..       .+.++-+.|+|++.++....-|+..++|+.
T Consensus       195 h~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e  267 (445)
T KOG2139|consen  195 HNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQE  267 (445)
T ss_pred             CceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehh
Confidence            478999999999988887765 55889999987765       567889999999999999999999999943

>KOG1007|consensus

Probab=98.80  E-value=3.9e-08  Score=53.74  Aligned_cols=65  Identities=25%  Similarity=0.537  Sum_probs=53.6

Q ss_pred             CcCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccC-CCEEEEecCCCcEEEEeC
Q psy16880         13 NSAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSK-QRTLISGGDDGSICMWNL   77 (84)
Q Consensus        13 ~~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~-~~~~~~~~~~~~i~~~~~   77 (84)
                      ...|..++|+|+. ..|++++.++.+++||.+..+.        ...|.++.|.|. ...+++++.|..+.+|..
T Consensus       214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca  288 (370)
T KOG1007|consen  214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA  288 (370)
T ss_pred             cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence            5568999999976 4788999999999999986544        457999999984 467789999999999864

>KOG1009|consensus

Probab=98.80  E-value=8.6e-08  Score=54.14  Aligned_cols=69  Identities=28%  Similarity=0.542  Sum_probs=58.6

Q ss_pred             cCCCcCEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC----------------CCCEEEEEEccCCCEEEEecCCCcE
Q psy16880         10 HSNNSAVRSISFCSKQH-TLISGGDDGSICMWNLNSKLC----------------DSAVRSISFCSKQRTLISGGDDGSI   72 (84)
Q Consensus        10 ~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~----------------~~~v~~~~~~~~~~~~~~~~~~~~i   72 (84)
                      -|+..++.++.|..+.. .+++|+.|..+++|-++....                ...|.++.|+|++..+++|+.++.+
T Consensus        10 wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v   89 (434)
T KOG1009|consen   10 WHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEV   89 (434)
T ss_pred             ecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceE
Confidence            34467899999998765 999999999999998864332                5679999999999999999999999


Q ss_pred             EEEeCC
Q psy16880         73 CMWNLN   78 (84)
Q Consensus        73 ~~~~~~   78 (84)
                      .+|...
T Consensus        90 ~lWk~~   95 (434)
T KOG1009|consen   90 FLWKQG   95 (434)
T ss_pred             EEEEec
Confidence            999655

>KOG4227|consensus

Probab=98.79  E-value=3.1e-08  Score=56.19  Aligned_cols=76  Identities=24%  Similarity=0.374  Sum_probs=65.2

Q ss_pred             EeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCC------C--------CCCEEEEEEccCCCEEEEecCCCcE
Q psy16880          7 TFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKL------C--------DSAVRSISFCSKQRTLISGGDDGSI   72 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~------~--------~~~v~~~~~~~~~~~~~~~~~~~~i   72 (84)
                      .+.+| .+.|.++.|+-++++|++|+.|..+.+|.+....      +        ++.|.+++|....+.+.+|..++++
T Consensus        51 D~~~H-~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   51 DVREH-TGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhh-ccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            34567 8999999999999999999999999999885331      1        5789999999888899999999999


Q ss_pred             EEEeCCCCeec
Q psy16880         73 CMWNLNSKLCD   83 (84)
Q Consensus        73 ~~~~~~~~~~~   83 (84)
                      ..-|+.+++.+
T Consensus       130 I~HDiEt~qsi  140 (609)
T KOG4227|consen  130 IKHDIETKQSI  140 (609)
T ss_pred             Eeeecccceee
Confidence            99999887754

>KOG1445|consensus

Probab=98.78  E-value=6.2e-09  Score=61.88  Aligned_cols=69  Identities=22%  Similarity=0.424  Sum_probs=58.0

Q ss_pred             CcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC--------------CCCEEEEEEccC-CCEEEEecCCCcEEEEe
Q psy16880         13 NSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC--------------DSAVRSISFCSK-QRTLISGGDDGSICMWN   76 (84)
Q Consensus        13 ~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~--------------~~~v~~~~~~~~-~~~~~~~~~~~~i~~~~   76 (84)
                      ...|..+.|.| +...|+.++.|+.+.+|.+.....              ...|+.+.|+|- ...+++++.|.+|.+||
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD  706 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence            45689999999 788999999999999999875533              457999999984 45778899999999999


Q ss_pred             CCCCe
Q psy16880         77 LNSKL   81 (84)
Q Consensus        77 ~~~~~   81 (84)
                      +++++
T Consensus       707 l~~~~  711 (1012)
T KOG1445|consen  707 LANAK  711 (1012)
T ss_pred             hhhhh
Confidence            98764

>KOG1523|consensus

Probab=98.78  E-value=9.3e-08  Score=52.73  Aligned_cols=74  Identities=15%  Similarity=0.310  Sum_probs=64.2

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      +.+++..| ...|..++|.|....+.+++.|..-.+|.......          +....++.|+|.+..+++++....|.
T Consensus        47 ~~htls~H-d~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~is  125 (361)
T KOG1523|consen   47 PAHTLSEH-DKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLIS  125 (361)
T ss_pred             eceehhhh-CcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEE
Confidence            56677788 89999999999999999999999999999854433          67889999999999999999999999


Q ss_pred             EEeCC
Q psy16880         74 MWNLN   78 (84)
Q Consensus        74 ~~~~~   78 (84)
                      +|-++
T Consensus       126 Vcy~E  130 (361)
T KOG1523|consen  126 VCYYE  130 (361)
T ss_pred             EEEEe
Confidence            88654

>KOG4378|consensus

Probab=98.78  E-value=6.1e-08  Score=56.29  Aligned_cols=72  Identities=19%  Similarity=0.393  Sum_probs=62.1

Q ss_pred             ccCCCcCEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880          9 VHSNNSAVRSISFCSK-QHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus         9 ~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (84)
                      +.| ..+...++|+|. ..+|++.+.|..+.+||+.....      ..+.+.++|.++|.+++.|...|.+..||++..+
T Consensus       205 ~~H-sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k  283 (673)
T KOG4378|consen  205 EAH-SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK  283 (673)
T ss_pred             hhc-cCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence            345 788889999995 46788999999999999986555      6788999999999999999999999999998655

>KOG4328|consensus

Probab=98.76  E-value=1.3e-07  Score=54.20  Aligned_cols=73  Identities=16%  Similarity=0.398  Sum_probs=58.6

Q ss_pred             EeccCCCcCEEEEEEccCC--CEEEEeCCCCcEEEEeCCCCCC-----------CCCEEEEEEccC-CCEEEEecCCCcE
Q psy16880          7 TFVHSNNSAVRSISFCSKQ--HTLISGGDDGSICMWNLNSKLC-----------DSAVRSISFCSK-QRTLISGGDDGSI   72 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~~~--~~l~~~~~~~~~~~~d~~~~~~-----------~~~v~~~~~~~~-~~~~~~~~~~~~i   72 (84)
                      .++.+ ..+|++++|+|..  .++++|...|.|-+||+.....           ..+|.++.|+|. -..+++.+.||+|
T Consensus       181 v~kv~-~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti  259 (498)
T KOG4328|consen  181 VAKVT-DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI  259 (498)
T ss_pred             eeEec-ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence            34445 7899999999954  5788899999999999963322           567999999984 4678899999999


Q ss_pred             EEEeCCCC
Q psy16880         73 CMWNLNSK   80 (84)
Q Consensus        73 ~~~~~~~~   80 (84)
                      ++-|++..
T Consensus       260 R~~D~~~~  267 (498)
T KOG4328|consen  260 RLQDFEGN  267 (498)
T ss_pred             eeeeecch
Confidence            99888653

>KOG1587|consensus

Probab=98.76  E-value=3.3e-07  Score=54.31  Aligned_cols=67  Identities=25%  Similarity=0.594  Sum_probs=55.2

Q ss_pred             CcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC-------------CCCEEEEEEccCCC--EEEEecCCCcEEEEe
Q psy16880         13 NSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC-------------DSAVRSISFCSKQR--TLISGGDDGSICMWN   76 (84)
Q Consensus        13 ~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~-------------~~~v~~~~~~~~~~--~~~~~~~~~~i~~~~   76 (84)
                      ...|.+++|+| +...++.|..+|++.+||++....             ...+..+.|..+..  -+++++.||.|..|+
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~  321 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD  321 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence            57899999999 678899999999999999975533             56788888876544  489999999999998


Q ss_pred             CCC
Q psy16880         77 LNS   79 (84)
Q Consensus        77 ~~~   79 (84)
                      ++.
T Consensus       322 ~~~  324 (555)
T KOG1587|consen  322 TDM  324 (555)
T ss_pred             ccc
Confidence            764

>smart00320 WD40 WD40 repeats

Probab=98.76  E-value=1e-07  Score=35.96  Aligned_cols=39  Identities=31%  Similarity=0.641  Sum_probs=32.9

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEe
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWN   41 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d   41 (84)
                      ++++..+..+ ...|.+++|.+.+..+++++.++.+.+|+
T Consensus         2 ~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGH-TGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEec-CCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            5667777777 88899999998888899999999998886

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1034|consensus

Probab=98.76  E-value=3.3e-08  Score=54.65  Aligned_cols=37  Identities=30%  Similarity=0.431  Sum_probs=33.5

Q ss_pred             eccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCC
Q psy16880          8 FVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSK   45 (84)
Q Consensus         8 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~   45 (84)
                      +++| .+.|.+++|++++.++++++.|.++.+|+++.+
T Consensus       177 ~egH-rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~  213 (385)
T KOG1034|consen  177 VEGH-RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK  213 (385)
T ss_pred             cccc-cCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence            3667 899999999999999999999999999999833

>KOG1409|consensus

Probab=98.74  E-value=8.4e-08  Score=53.43  Aligned_cols=77  Identities=34%  Similarity=0.650  Sum_probs=64.4

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      ++.++.+| .+.+.+++|.+....|.++..+..+.+||+-....        ...|..+++.+.-+.+.+++.|+.|.+|
T Consensus       189 ~i~~~~~h-~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w  267 (404)
T KOG1409|consen  189 LITTFNGH-TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVW  267 (404)
T ss_pred             eEEEEcCc-ccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEE
Confidence            46677888 99999999999999999999999999999965433        4567777777777788999999999999


Q ss_pred             eCCCCe
Q psy16880         76 NLNSKL   81 (84)
Q Consensus        76 ~~~~~~   81 (84)
                      +.+...
T Consensus       268 ~mn~~r  273 (404)
T KOG1409|consen  268 NMNVKR  273 (404)
T ss_pred             ecccee
Confidence            987544

>KOG1524|consensus

Probab=98.70  E-value=1.5e-07  Score=55.23  Aligned_cols=38  Identities=21%  Similarity=0.403  Sum_probs=33.6

Q ss_pred             ccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC
Q psy16880          9 VHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC   47 (84)
Q Consensus         9 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~   47 (84)
                      +.| ++-|.+++|++....+++|+.|..+++||......
T Consensus       183 kAH-DGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~L  220 (737)
T KOG1524|consen  183 RAH-DGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANL  220 (737)
T ss_pred             ecc-CcEEEEeecCccccceeecCCceeEEeecccCccc
Confidence            456 89999999999999999999999999999875544

>KOG0644|consensus

Probab=98.69  E-value=1.8e-08  Score=61.37  Aligned_cols=76  Identities=18%  Similarity=0.408  Sum_probs=66.8

Q ss_pred             EeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880          7 TFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~   79 (84)
                      .+.+| .+.|.|..|...|..+++|+.|..+++|.+.+...       .+.++.++.+.+..++++++.|..|++|.+++
T Consensus       185 rLlgH-~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~  263 (1113)
T KOG0644|consen  185 RLLGH-RNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD  263 (1113)
T ss_pred             HHHhh-hhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence            35677 88999999999999999999999999999877655       67889999888888899999999999999988


Q ss_pred             Ceec
Q psy16880         80 KLCD   83 (84)
Q Consensus        80 ~~~~   83 (84)
                      +.++
T Consensus       264 ~~pv  267 (1113)
T KOG0644|consen  264 GAPV  267 (1113)
T ss_pred             CchH
Confidence            7654

>KOG1063|consensus

Probab=98.68  E-value=9.1e-08  Score=57.12  Aligned_cols=76  Identities=20%  Similarity=0.308  Sum_probs=63.4

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCC---EEEEeCCCCcEEEEeCCCCC----C----------------------------
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQH---TLISGGDDGSICMWNLNSKL----C----------------------------   47 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~~~~~~~~d~~~~~----~----------------------------   47 (84)
                      +.+..+++| .+.|.+++|...+.   ++++++.|..+++|.+....    .                            
T Consensus       182 ~~v~el~GH-~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~e  260 (764)
T KOG1063|consen  182 ARVAELEGH-TDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFE  260 (764)
T ss_pred             eEEEEeecc-chhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehh
Confidence            356788999 99999999988544   78999999999999764332    0                            


Q ss_pred             ------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880         48 ------DSAVRSISFCSKQRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus        48 ------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~   79 (84)
                            +..|+++.|+|.+..+++++.|.++.+|....
T Consensus       261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~  298 (764)
T KOG1063|consen  261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDE  298 (764)
T ss_pred             hhhcCcccceEEEEEccchhhheecccCcceEEEecCC
Confidence                  66899999999998899999999999997654

>KOG2394|consensus

Probab=98.68  E-value=1.9e-07  Score=54.58  Aligned_cols=69  Identities=12%  Similarity=0.339  Sum_probs=56.3

Q ss_pred             CcCEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC-----------------------------------CCCEEEEEE
Q psy16880         13 NSAVRSISFCSK-QHTLISGGDDGSICMWNLNSKLC-----------------------------------DSAVRSISF   56 (84)
Q Consensus        13 ~~~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~-----------------------------------~~~v~~~~~   56 (84)
                      +..+.+++|.|. ...++.+-.++.+.++|......                                   +..|..++|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            467899999994 46777888899999887642211                                   567889999


Q ss_pred             ccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880         57 CSKQRTLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        57 ~~~~~~~~~~~~~~~i~~~~~~~~~   81 (84)
                      +|++++++++++|+.++|||..+.+
T Consensus       299 S~DG~~LA~VSqDGfLRvF~fdt~e  323 (636)
T KOG2394|consen  299 SPDGKYLATVSQDGFLRIFDFDTQE  323 (636)
T ss_pred             cCCCceEEEEecCceEEEeeccHHH
Confidence            9999999999999999999987654

>KOG1007|consensus

Probab=98.67  E-value=1.7e-07  Score=51.38  Aligned_cols=34  Identities=26%  Similarity=0.625  Sum_probs=26.6

Q ss_pred             CCCEEEEEEccCC-CEEEEecCCCcEEEEeCCCCe
Q psy16880         48 DSAVRSISFCSKQ-RTLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        48 ~~~v~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~   81 (84)
                      ...|..+.|.|+. ..+++++.|+.+++||.+.-+
T Consensus       214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk  248 (370)
T KOG1007|consen  214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK  248 (370)
T ss_pred             cceeeeccCCCCceEEEEEcCCCccEEEEeccCCC
Confidence            4458889999865 466788889999999987543

>KOG1587|consensus

Probab=98.65  E-value=1.6e-07  Score=55.64  Aligned_cols=75  Identities=15%  Similarity=0.321  Sum_probs=59.2

Q ss_pred             eEEEeccCCCcCEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          4 IIHTFVHSNNSAVRSISFCSK-QHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      ++..++.+ ...+.+++|+|. ...|+++..+|.+.+||+.....         ....+.+.|++.++.++.|...|.++
T Consensus       433 Pl~~~~~~-~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~  511 (555)
T KOG1587|consen  433 PLLSLDSS-PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTH  511 (555)
T ss_pred             cchhhhhc-cceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEE
Confidence            33444455 667999999994 57889999999999999975543         24456777888899999999999999


Q ss_pred             EEeCCC
Q psy16880         74 MWNLNS   79 (84)
Q Consensus        74 ~~~~~~   79 (84)
                      +|++..
T Consensus       512 ~~~l~~  517 (555)
T KOG1587|consen  512 ILKLSE  517 (555)
T ss_pred             EEEcCc
Confidence            999853

>KOG1272|consensus

Probab=98.65  E-value=5.5e-08  Score=55.86  Aligned_cols=68  Identities=16%  Similarity=0.309  Sum_probs=53.2

Q ss_pred             EEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          5 IHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         5 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      +..+-.| .++|.++++.++|.++++.+.|..+.+||++....      +.....++++..+  ++..+....+.+|
T Consensus       286 LvKiLcH-~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~iw  359 (545)
T KOG1272|consen  286 LVKILCH-RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGDHVQIW  359 (545)
T ss_pred             HHHHHhc-CCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCCeeeee
Confidence            3344556 89999999999999999999999999999987655      4556677777655  4444556678888

>KOG2445|consensus

Probab=98.64  E-value=1.5e-06  Score=47.98  Aligned_cols=71  Identities=14%  Similarity=0.319  Sum_probs=57.1

Q ss_pred             eccCCCcCEEEEEEcc--CCCEEEEeCCCCcEEEEeCCCCCC----------------CCCEEEEEEccC--CCEEEEec
Q psy16880          8 FVHSNNSAVRSISFCS--KQHTLISGGDDGSICMWNLNSKLC----------------DSAVRSISFCSK--QRTLISGG   67 (84)
Q Consensus         8 ~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~~~~~d~~~~~~----------------~~~v~~~~~~~~--~~~~~~~~   67 (84)
                      -+.| .+.|..+.|-+  -|+.+++++.|+.+.+|.-.....                +..|..++|.|.  |-++++++
T Consensus        55 Wrah-~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~  133 (361)
T KOG2445|consen   55 WRAH-DGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAAS  133 (361)
T ss_pred             EEec-CCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEec
Confidence            3456 78889999976  578999999999999998742221                678999999984  56788999


Q ss_pred             CCCcEEEEeCCC
Q psy16880         68 DDGSICMWNLNS   79 (84)
Q Consensus        68 ~~~~i~~~~~~~   79 (84)
                      .||.+++|+..+
T Consensus       134 aDG~lRIYEA~d  145 (361)
T KOG2445|consen  134 ADGILRIYEAPD  145 (361)
T ss_pred             cCcEEEEEecCC
Confidence            999999997643

>KOG0322|consensus

Probab=98.63  E-value=1.6e-07  Score=50.80  Aligned_cols=75  Identities=21%  Similarity=0.285  Sum_probs=61.6

Q ss_pred             eccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880          8 FVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----------DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus         8 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      +..| ..+|.+++|.+....=++|+.+-.+.+|.++....           +-.+..+.+.|+++.++++++|+.|++|.
T Consensus       201 ~ash-~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVys  279 (323)
T KOG0322|consen  201 NASH-KQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYS  279 (323)
T ss_pred             hhhc-cCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEE
Confidence            3445 78899999988666667888888899998865422           45788999999999999999999999999


Q ss_pred             CCCCeec
Q psy16880         77 LNSKLCD   83 (84)
Q Consensus        77 ~~~~~~~   83 (84)
                      .++..++
T Consensus       280 wrtl~pL  286 (323)
T KOG0322|consen  280 WRTLNPL  286 (323)
T ss_pred             eccCCch
Confidence            9887764

>KOG4547|consensus

Probab=98.63  E-value=1.1e-06  Score=51.60  Aligned_cols=80  Identities=16%  Similarity=0.196  Sum_probs=66.2

Q ss_pred             CceEEEec-cCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          2 GSIIHTFV-HSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         2 g~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      |+.-+.+. +.|.+.|.++.++.+...+.+++.|..+..|+......       +..+..++++|++.++++++  +.|+
T Consensus        90 g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik  167 (541)
T KOG4547|consen   90 GEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIK  167 (541)
T ss_pred             CeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEE
Confidence            44455554 33389999999999999999999999999999887655       55789999999999998886  6899


Q ss_pred             EEeCCCCeec
Q psy16880         74 MWNLNSKLCD   83 (84)
Q Consensus        74 ~~~~~~~~~~   83 (84)
                      +||+++++.+
T Consensus       168 ~~~~~~kevv  177 (541)
T KOG4547|consen  168 VLDIETKEVV  177 (541)
T ss_pred             EEEccCceEE
Confidence            9999998864

>KOG0644|consensus

Probab=98.63  E-value=2e-08  Score=61.10  Aligned_cols=73  Identities=19%  Similarity=0.421  Sum_probs=63.6

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      ++.++...++| .+.|..++.+.+..++++++.|..+++|.+.....       .+.|++++|+|..    +.+.||++.
T Consensus       221 t~~~lAs~rGh-s~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~  295 (1113)
T KOG0644|consen  221 TARCLASCRGH-SGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCR  295 (1113)
T ss_pred             chhhhccCCCC-ccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceE
Confidence            35677788999 99999999998889999999999999999987766       7789999999865    556799999


Q ss_pred             EEeCC
Q psy16880         74 MWNLN   78 (84)
Q Consensus        74 ~~~~~   78 (84)
                      +||.+
T Consensus       296 ~wd~r  300 (1113)
T KOG0644|consen  296 IWDAR  300 (1113)
T ss_pred             ecccc
Confidence            99976

>KOG1963|consensus

Probab=98.62  E-value=7e-07  Score=54.31  Aligned_cols=68  Identities=24%  Similarity=0.368  Sum_probs=60.9

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSK   80 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   80 (84)
                      ...|.+++|+++|..|++|+..+.+.+|...++..      .+.|..+.++|++.....+..|+.|++-...+.
T Consensus       251 ~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl  324 (792)
T KOG1963|consen  251 HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL  324 (792)
T ss_pred             ccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence            56899999999999999999999999999987766      789999999999999999999999998766443

>KOG0307|consensus

Probab=98.62  E-value=5.3e-08  Score=60.32  Aligned_cols=77  Identities=22%  Similarity=0.478  Sum_probs=65.2

Q ss_pred             ceEEEeccCCCcCEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCC-EEEEecCCCcEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSK-QHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQR-TLISGGDDGSIC   73 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~-~~~~~~~~~~i~   73 (84)
                      .+++++++| ...|.+|+|++. .+++++++.|+.+.+|+.+++..       .+.+..+.|+|... .++..+.+|.|-
T Consensus       244 sP~k~~~~H-~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~  322 (1049)
T KOG0307|consen  244 SPLKILEGH-QRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKIS  322 (1049)
T ss_pred             Cchhhhccc-ccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheecccee
Confidence            356778888 889999999995 48999999999999999998766       57899999999765 677888899999


Q ss_pred             EEeCCCC
Q psy16880         74 MWNLNSK   80 (84)
Q Consensus        74 ~~~~~~~   80 (84)
                      |+.+.+.
T Consensus       323 I~sl~~~  329 (1049)
T KOG0307|consen  323 IYSLQGT  329 (1049)
T ss_pred             eeeeecC
Confidence            9987543

>KOG1310|consensus

Probab=98.61  E-value=4.7e-07  Score=53.38  Aligned_cols=77  Identities=21%  Similarity=0.436  Sum_probs=60.1

Q ss_pred             ceEEEeccCCCcCEEEEEEcc--CCCEEEEeCCCCcEEEEeCCCCCC-----------------CCCEEEEEEccCC-CE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCS--KQHTLISGGDDGSICMWNLNSKLC-----------------DSAVRSISFCSKQ-RT   62 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~~~~~d~~~~~~-----------------~~~v~~~~~~~~~-~~   62 (84)
                      ++++.+...|...|++++|.|  +.+.+++|..|..|++||+...+.                 ...|-.++-.|++ ..
T Consensus        83 KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Pht  162 (758)
T KOG1310|consen   83 KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHT  162 (758)
T ss_pred             ceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCce
Confidence            455555443399999999999  457889999999999999985332                 3455667777777 67


Q ss_pred             EEEecCCCcEEEEeCCC
Q psy16880         63 LISGGDDGSICMWNLNS   79 (84)
Q Consensus        63 ~~~~~~~~~i~~~~~~~   79 (84)
                      +.+++.||+|+-+|++.
T Consensus       163 fwsasEDGtirQyDiRE  179 (758)
T KOG1310|consen  163 FWSASEDGTIRQYDIRE  179 (758)
T ss_pred             EEEecCCcceeeecccC
Confidence            78999999999999875

>KOG1538|consensus

Probab=98.61  E-value=4.5e-07  Score=54.66  Aligned_cols=65  Identities=15%  Similarity=0.389  Sum_probs=54.9

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLN   78 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~   78 (84)
                      ...|..++|-|+|+.|+.+..+ .+.+||.+.+..       ...|++++|+.+|+.+++|+.|..+.+|...
T Consensus        12 ~hci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k   83 (1081)
T KOG1538|consen   12 EHCINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK   83 (1081)
T ss_pred             ccchheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc
Confidence            4578999999999877665544 678899987766       6689999999999999999999999999753

>KOG1408|consensus

Probab=98.61  E-value=1.1e-06  Score=53.45  Aligned_cols=78  Identities=24%  Similarity=0.451  Sum_probs=66.0

Q ss_pred             CCceEEEeccCC--CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCc
Q psy16880          1 DGSIIHTFVHSN--NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGS   71 (84)
Q Consensus         1 ~g~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~   71 (84)
                      +|+..+.|++.+  ++....+...|.+.++++...|..+.++|.-.+..       ...|+++.|.++.+.+++++.|+.
T Consensus       627 sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgC  706 (1080)
T KOG1408|consen  627 SGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGC  706 (1080)
T ss_pred             ccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCce
Confidence            356666776531  46677888899999999999999999999987766       457999999999999999999999


Q ss_pred             EEEEeCC
Q psy16880         72 ICMWNLN   78 (84)
Q Consensus        72 i~~~~~~   78 (84)
                      |.+|.+.
T Consensus       707 IFvW~lp  713 (1080)
T KOG1408|consen  707 IFVWKLP  713 (1080)
T ss_pred             EEEEECc
Confidence            9999875

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.61  E-value=1.1e-06  Score=50.72  Aligned_cols=75  Identities=13%  Similarity=0.142  Sum_probs=52.6

Q ss_pred             EEeccCCCcCEEEEEEccCCCEEEEeCC---CCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEec-CCCcEEEE
Q psy16880          6 HTFVHSNNSAVRSISFCSKQHTLISGGD---DGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGG-DDGSICMW   75 (84)
Q Consensus         6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~---~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~-~~~~i~~~   75 (84)
                      +.+..+ ...+...+|+|+++.++..+.   +..+.+||+.++..      .......+|+|+++.++.+. .++.+.+|
T Consensus       197 ~~lt~~-~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy  275 (429)
T PRK01742        197 FIVNRS-SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIY  275 (429)
T ss_pred             eEeccC-CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEE
Confidence            344455 667889999999998877653   34688999976543      34456789999999887654 57765555


Q ss_pred             --eCCCCe
Q psy16880         76 --NLNSKL   81 (84)
Q Consensus        76 --~~~~~~   81 (84)
                        |+.+++
T Consensus       276 ~~d~~~~~  283 (429)
T PRK01742        276 VMGANGGT  283 (429)
T ss_pred             EEECCCCC
Confidence              655443

>KOG1523|consensus

Probab=98.61  E-value=7.2e-07  Score=49.39  Aligned_cols=64  Identities=19%  Similarity=0.316  Sum_probs=56.0

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----------DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      ...+.++.|+|.+..|+.|+....+.+|-+....-           ++.|.++.|+|+.-.++.|+.|+.++++.
T Consensus       100 NrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfS  174 (361)
T KOG1523|consen  100 NRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFS  174 (361)
T ss_pred             ccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEE
Confidence            66789999999999999999999999987654433           67899999999999999999999999985

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.58  E-value=5.6e-06  Score=48.40  Aligned_cols=77  Identities=5%  Similarity=0.144  Sum_probs=64.1

Q ss_pred             EEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecC----CCcEE
Q psy16880          5 IHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGD----DGSIC   73 (84)
Q Consensus         5 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~----~~~i~   73 (84)
                      +..++.. -+.|.+++.+++|+.++.++....+.+.|+.++..       .+.|..+.|+|++++++-+--    ...|+
T Consensus       394 ~kr~e~~-lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Ik  472 (668)
T COG4946         394 VKRIEKD-LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIK  472 (668)
T ss_pred             EEEeeCC-ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEE
Confidence            4455555 78999999999999999999999999999988876       678999999999999986533    44699


Q ss_pred             EEeCCCCee
Q psy16880         74 MWNLNSKLC   82 (84)
Q Consensus        74 ~~~~~~~~~   82 (84)
                      ++|..+++.
T Consensus       473 lydm~~~Ki  481 (668)
T COG4946         473 LYDMDGGKI  481 (668)
T ss_pred             EEecCCCeE
Confidence            999888764

>KOG1963|consensus

Probab=98.58  E-value=7.5e-07  Score=54.19  Aligned_cols=69  Identities=26%  Similarity=0.539  Sum_probs=59.9

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCC--CCC---------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNS--KLC---------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~--~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (84)
                      ...+.+.+++|.++.++++..+|.+.+|.-..  ...         -..|.+++|+++|..+++|++.+.+-+|...+++
T Consensus       205 tf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~  284 (792)
T KOG1963|consen  205 TFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK  284 (792)
T ss_pred             cccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence            66688999999999999999999999996543  111         5689999999999999999999999999988766

>KOG1408|consensus

Probab=98.58  E-value=1.2e-06  Score=53.23  Aligned_cols=71  Identities=11%  Similarity=0.234  Sum_probs=63.4

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                      ...+..|++.|...+.++++.|..+++||+..++.          ++..-.+...|.+.++++.+.|.++.++|..+++|
T Consensus       596 ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEc  675 (1080)
T KOG1408|consen  596 KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGEC  675 (1080)
T ss_pred             cceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchh
Confidence            35689999999999999999999999999987766          45666788899999999999999999999999887


Q ss_pred             c
Q psy16880         83 D   83 (84)
Q Consensus        83 ~   83 (84)
                      +
T Consensus       676 v  676 (1080)
T KOG1408|consen  676 V  676 (1080)
T ss_pred             h
Confidence            5

>KOG2919|consensus

Probab=98.57  E-value=9.6e-07  Score=49.14  Aligned_cols=69  Identities=19%  Similarity=0.416  Sum_probs=56.2

Q ss_pred             CcCEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecC-CCcEEEEeCCCCe
Q psy16880         13 NSAVRSISFCSK-QHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGD-DGSICMWNLNSKL   81 (84)
Q Consensus        13 ~~~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~   81 (84)
                      .+.|.+++++|. ...++.++....+-+|.-....+       ++.|+.++|+++|..+.+|.+ +..|..||++..+
T Consensus       207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~  284 (406)
T KOG2919|consen  207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR  284 (406)
T ss_pred             cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc
Confidence            567899999995 45888888888888876654444       789999999999999999887 6789999998543

>KOG0650|consensus

Probab=98.56  E-value=1.3e-07  Score=55.85  Aligned_cols=72  Identities=28%  Similarity=0.409  Sum_probs=58.8

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCC------CCCC--------------CCCEEEEEEccCCCE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLN------SKLC--------------DSAVRSISFCSKQRT   62 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~------~~~~--------------~~~v~~~~~~~~~~~   62 (84)
                      ++.++++-| ...+..++|++.-.+|++|+.|+.+.+|.-.      ....              .-.|....|+|...+
T Consensus       641 kPyk~lr~H-~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpW  719 (733)
T KOG0650|consen  641 KPYKTLRLH-EKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPW  719 (733)
T ss_pred             chhHHhhhh-hhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCce
Confidence            455666677 8999999999999999999999999887432      1111              235778889999999


Q ss_pred             EEEecCCCcEEEE
Q psy16880         63 LISGGDDGSICMW   75 (84)
Q Consensus        63 ~~~~~~~~~i~~~   75 (84)
                      +.+++.|++|++|
T Consensus       720 LfsAGAd~tirlf  732 (733)
T KOG0650|consen  720 LFSAGADGTIRLF  732 (733)
T ss_pred             EEecCCCceEEee
Confidence            9999999999998

>KOG4714|consensus

Probab=98.54  E-value=2.5e-07  Score=50.06  Aligned_cols=66  Identities=23%  Similarity=0.519  Sum_probs=55.5

Q ss_pred             cCEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEcc-CCCEEEEecCCCcEEEEeCCC
Q psy16880         14 SAVRSISFCSK-QHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCS-KQRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus        14 ~~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~~   79 (84)
                      ..|.+++-+|. ...+++|+.+|.+.+||.+....        +..+.-+.|+| ++..+++++.||.+..||-.+
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            34888888994 56778999999999999987644        78899999998 567899999999999999774

>KOG2315|consensus

Probab=98.45  E-value=9.5e-06  Score=47.80  Aligned_cols=77  Identities=12%  Similarity=0.343  Sum_probs=56.7

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEe---CCCCcEEEEeCCCCCC-----CCCEEEEEEccCCCEEEEecC-----
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISG---GDDGSICMWNLNSKLC-----DSAVRSISFCSKQRTLISGGD-----   68 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~~~~~~~~d~~~~~~-----~~~v~~~~~~~~~~~~~~~~~-----   68 (84)
                      |.++..+.   +++=.++-|+|.|+.++.+   +..|.+.+||....+.     -..-+-+.|+|+|.+++++..     
T Consensus       303 ~~~v~df~---egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlr  379 (566)
T KOG2315|consen  303 GKPVFDFP---EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLR  379 (566)
T ss_pred             CCEeEeCC---CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEE
Confidence            34444442   4566788999999987655   5577999999987555     334566889999999988763     


Q ss_pred             -CCcEEEEeCCCCe
Q psy16880         69 -DGSICMWNLNSKL   81 (84)
Q Consensus        69 -~~~i~~~~~~~~~   81 (84)
                       |+.++||++....
T Consensus       380 vdNg~KiwhytG~~  393 (566)
T KOG2315|consen  380 VDNGIKIWHYTGSL  393 (566)
T ss_pred             ecCCeEEEEecCce
Confidence             6789999876543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.45  E-value=8e-06  Score=47.36  Aligned_cols=75  Identities=15%  Similarity=0.195  Sum_probs=53.6

Q ss_pred             EEeccCCCcCEEEEEEccCCCEEEEeC---CCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEE-EecCCCc--EE
Q psy16880          6 HTFVHSNNSAVRSISFCSKQHTLISGG---DDGSICMWNLNSKLC------DSAVRSISFCSKQRTLI-SGGDDGS--IC   73 (84)
Q Consensus         6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~-~~~~~~~--i~   73 (84)
                      +.+..+ ...+...+|+|+++.++..+   .+..+.+||+.++..      ...+....|+|+++.++ +.+.++.  |.
T Consensus       195 ~~lt~~-~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy  273 (435)
T PRK05137        195 RYLTDG-SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY  273 (435)
T ss_pred             EEEecC-CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence            444455 67889999999999877654   346889999976544      44667889999998775 4444544  77


Q ss_pred             EEeCCCCe
Q psy16880         74 MWNLNSKL   81 (84)
Q Consensus        74 ~~~~~~~~   81 (84)
                      +||+.+++
T Consensus       274 ~~d~~~~~  281 (435)
T PRK05137        274 TMDLRSGT  281 (435)
T ss_pred             EEECCCCc
Confidence            77877654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.38  E-value=3e-05  Score=43.11  Aligned_cols=77  Identities=30%  Similarity=0.550  Sum_probs=58.4

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQH-TLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      ..+..+.+| ...|.+++|.|++. .+++++.++.+.+||......        .... ...|+|++..+++++.++.++
T Consensus       189 ~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~  266 (466)
T COG2319         189 KPLSTLAGH-TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIR  266 (466)
T ss_pred             ceEEeeccC-CCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEE
Confidence            456677777 88999999999887 555559999999998763322        1222 227899888888999999999


Q ss_pred             EEeCCCCe
Q psy16880         74 MWNLNSKL   81 (84)
Q Consensus        74 ~~~~~~~~   81 (84)
                      +|+.....
T Consensus       267 ~~~~~~~~  274 (466)
T COG2319         267 LWDLRSSS  274 (466)
T ss_pred             EeeecCCC
Confidence            99987543

>KOG2315|consensus

Probab=98.32  E-value=1.8e-05  Score=46.71  Aligned_cols=71  Identities=13%  Similarity=0.291  Sum_probs=57.7

Q ss_pred             CcCEEEEEEccCCCEEE--EeCCCCcEEEEeCCCCCC----CCCEEEEEEccCCCEEEEecC---CCcEEEEeCCCCeec
Q psy16880         13 NSAVRSISFCSKQHTLI--SGGDDGSICMWNLNSKLC----DSAVRSISFCSKQRTLISGGD---DGSICMWNLNSKLCD   83 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~--~~~~~~~~~~~d~~~~~~----~~~v~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~   83 (84)
                      .++|.++.|+|+++-|+  -|-....+.+||++-...    ++.-.++-|+|.|++++.++.   .|.|-+||..+.+++
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i  349 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI  349 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence            68999999999997554  456666889999886555    677788999999999988775   467999999887764

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.32  E-value=3.3e-05  Score=44.90  Aligned_cols=70  Identities=11%  Similarity=0.124  Sum_probs=50.2

Q ss_pred             CcCEEEEEEccCCCEEEEeC---CCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEe-cCCC--cEEEEeCCCC
Q psy16880         13 NSAVRSISFCSKQHTLISGG---DDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISG-GDDG--SICMWNLNSK   80 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~---~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~-~~~~--~i~~~~~~~~   80 (84)
                      ...+...+|+|+|+.++..+   ....+.+||+..+..      ...+....|+|+++.++.. +.++  .|.+||+.++
T Consensus       198 ~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg  277 (429)
T PRK03629        198 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG  277 (429)
T ss_pred             CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence            45788999999999887542   345788889876543      3455678999999988754 3344  4888898766


Q ss_pred             ee
Q psy16880         81 LC   82 (84)
Q Consensus        81 ~~   82 (84)
                      +.
T Consensus       278 ~~  279 (429)
T PRK03629        278 QI  279 (429)
T ss_pred             CE
Confidence            43

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.31  E-value=1.4e-05  Score=46.37  Aligned_cols=74  Identities=20%  Similarity=0.220  Sum_probs=51.7

Q ss_pred             EeccCCCcCEEEEEEccCCCEEEEeCC---CCcEEEEeCCCCCC------CCCEEEEEEccCCCEEE-EecCCC--cEEE
Q psy16880          7 TFVHSNNSAVRSISFCSKQHTLISGGD---DGSICMWNLNSKLC------DSAVRSISFCSKQRTLI-SGGDDG--SICM   74 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~~~~~l~~~~~---~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~-~~~~~~--~i~~   74 (84)
                      .+..+ ...+...+|+|+++.++..+.   ...+.+||+..+..      ........|+|+++.++ +.+.++  .|.+
T Consensus       198 ~lt~~-~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~  276 (433)
T PRK04922        198 TILRS-AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYV  276 (433)
T ss_pred             EeecC-CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEE
Confidence            34344 567788999999998876653   34688899876544      33455789999998775 334444  5888


Q ss_pred             EeCCCCe
Q psy16880         75 WNLNSKL   81 (84)
Q Consensus        75 ~~~~~~~   81 (84)
                      ||+.+++
T Consensus       277 ~d~~~g~  283 (433)
T PRK04922        277 MDLGSRQ  283 (433)
T ss_pred             EECCCCC
Confidence            9987665

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.29  E-value=1.6e-05  Score=46.10  Aligned_cols=69  Identities=13%  Similarity=0.145  Sum_probs=48.9

Q ss_pred             EeccCCCcCEEEEEEccCCCEEEEeCC---CCcEEEEeCCCCCC------CCCEEEEEEccCCCEEE-EecCCCcEEEEe
Q psy16880          7 TFVHSNNSAVRSISFCSKQHTLISGGD---DGSICMWNLNSKLC------DSAVRSISFCSKQRTLI-SGGDDGSICMWN   76 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~~~~~l~~~~~---~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~-~~~~~~~i~~~~   76 (84)
                      .+..+ ...+...+|+|+++.++..+.   ...+.+||+..+..      ...+....|+|+++.++ +.+.++...+|.
T Consensus       190 ~l~~~-~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~  268 (427)
T PRK02889        190 SALSS-PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT  268 (427)
T ss_pred             EeccC-CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence            33344 567889999999998876543   24588899976644      44567889999998776 456677666664

>KOG3881|consensus

Probab=98.28  E-value=1e-05  Score=45.90  Aligned_cols=68  Identities=9%  Similarity=0.191  Sum_probs=59.6

Q ss_pred             EEEEEEccC--CCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         16 VRSISFCSK--QHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        16 v~~~~~~~~--~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      +..+.|.+.  ...|+++..-+.+++||.+.+..        +..++++...|.++.++++...+.+..||.+.++.+
T Consensus       205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~  282 (412)
T KOG3881|consen  205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL  282 (412)
T ss_pred             eccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceee
Confidence            466778876  78999999999999999986655        788999999999999999999999999999988754

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.27  E-value=3.9e-05  Score=42.90  Aligned_cols=63  Identities=17%  Similarity=0.280  Sum_probs=48.6

Q ss_pred             EEEEEEccCCCEEE-EeCCCCcEEEEeCCCCCC-------------CCCEEEEEEccCCCEEEEecC-CCcEEEEeCC
Q psy16880         16 VRSISFCSKQHTLI-SGGDDGSICMWNLNSKLC-------------DSAVRSISFCSKQRTLISGGD-DGSICMWNLN   78 (84)
Q Consensus        16 v~~~~~~~~~~~l~-~~~~~~~~~~~d~~~~~~-------------~~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~~   78 (84)
                      ...++++|+++.++ +...++.+.+||+.....             .....++.|+|+++.++++.. ++.|.+|++.
T Consensus       128 ~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~  205 (330)
T PRK11028        128 CHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK  205 (330)
T ss_pred             ccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence            45678999998775 445668999999975321             334578999999998887765 8999999986

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.25  E-value=5.4e-05  Score=43.85  Aligned_cols=69  Identities=14%  Similarity=0.148  Sum_probs=48.4

Q ss_pred             CcCEEEEEEccCCCEEEEeCCC---CcEEEEeCCCCCC------CCCEEEEEEccCCCEEEE-ecCCC--cEEEEeCCCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDD---GSICMWNLNSKLC------DSAVRSISFCSKQRTLIS-GGDDG--SICMWNLNSK   80 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~---~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~-~~~~~--~i~~~~~~~~   80 (84)
                      ...+...+|+|+++.++..+..   ..+.+||+.++..      ...+....|+|+++.++. ...++  .|.++|+.++
T Consensus       198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~  277 (430)
T PRK00178        198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR  277 (430)
T ss_pred             CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence            5677888999999987655422   3677888876543      344557899999987764 43444  5788888765


Q ss_pred             e
Q psy16880         81 L   81 (84)
Q Consensus        81 ~   81 (84)
                      +
T Consensus       278 ~  278 (430)
T PRK00178        278 Q  278 (430)
T ss_pred             C
Confidence            4

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=98.23  E-value=1.2e-05  Score=32.83  Aligned_cols=28  Identities=25%  Similarity=0.615  Sum_probs=13.8

Q ss_pred             CEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880         50 AVRSISFCSKQRTLISGGDDGSICMWNL   77 (84)
Q Consensus        50 ~v~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (84)
                      .|..++|+|...+++.+..+|.|.++++
T Consensus        13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   13 RVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             cEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            3444555555444555544555555444

>KOG1517|consensus

Probab=98.20  E-value=3.7e-05  Score=48.83  Aligned_cols=66  Identities=21%  Similarity=0.297  Sum_probs=52.4

Q ss_pred             cCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC------------CCCEEEEEEccCCC-EEEEecCCCcEEEEeCCC
Q psy16880         14 SAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC------------DSAVRSISFCSKQR-TLISGGDDGSICMWNLNS   79 (84)
Q Consensus        14 ~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~------------~~~v~~~~~~~~~~-~~~~~~~~~~i~~~~~~~   79 (84)
                      ..|++++-+. .|..+++|..||.+++||.+-...            ...|.++.+.++|- .+++++.+|.|.+||++.
T Consensus      1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred             ccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence            4466665554 568999999999999999986544            22388888887664 489999999999999986

>KOG1517|consensus

Probab=98.19  E-value=3.3e-05  Score=49.04  Aligned_cols=75  Identities=20%  Similarity=0.364  Sum_probs=59.3

Q ss_pred             eEEEeccCCCcC--EEEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC------------CCCEEEEEEccCCCEEEEecC
Q psy16880          4 IIHTFVHSNNSA--VRSISFCSKQH-TLISGGDDGSICMWNLNSKLC------------DSAVRSISFCSKQRTLISGGD   68 (84)
Q Consensus         4 ~~~~~~~~~~~~--v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~------------~~~v~~~~~~~~~~~~~~~~~   68 (84)
                      ++...+.| ...  |.-+.+.+.|- .+++|+.+|.+.+||++....            .+..+++..+++...+++|+.
T Consensus      1246 ~v~~~R~h-~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1246 LVCVYREH-NDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred             cceeeccc-CCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc
Confidence            34455666 655  88888888664 599999999999999987422            224899999999999999987


Q ss_pred             CCcEEEEeCCCC
Q psy16880         69 DGSICMWNLNSK   80 (84)
Q Consensus        69 ~~~i~~~~~~~~   80 (84)
                       ..|+||++...
T Consensus      1325 -q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1325 -QLIKIYSLSGE 1335 (1387)
T ss_pred             -ceEEEEecChh
Confidence             89999998654

>KOG2139|consensus

Probab=98.18  E-value=4.2e-05  Score=43.46  Aligned_cols=70  Identities=19%  Similarity=0.374  Sum_probs=51.6

Q ss_pred             CcCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC--------------------CCCEEEEEEccCCCEEEEecC-CC
Q psy16880         13 NSAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC--------------------DSAVRSISFCSKQRTLISGGD-DG   70 (84)
Q Consensus        13 ~~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~--------------------~~~v~~~~~~~~~~~~~~~~~-~~   70 (84)
                      +..|.+++|-|.+ +.|+.|+.. -+.+|.......                    ...|+.++|.+++..+++++. +.
T Consensus       140 QrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gss  218 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSS  218 (445)
T ss_pred             hcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcc
Confidence            3568999999955 455555544 577897643211                    457999999999999988876 56


Q ss_pred             cEEEEeCCCCeec
Q psy16880         71 SICMWNLNSKLCD   83 (84)
Q Consensus        71 ~i~~~~~~~~~~~   83 (84)
                      .|.+||+.++..+
T Consensus       219 si~iWdpdtg~~~  231 (445)
T KOG2139|consen  219 SIMIWDPDTGQKI  231 (445)
T ss_pred             eEEEEcCCCCCcc
Confidence            7999999877643

>KOG4532|consensus

Probab=98.18  E-value=4.9e-05  Score=41.74  Aligned_cols=66  Identities=12%  Similarity=0.141  Sum_probs=55.5

Q ss_pred             EEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880         16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        16 v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (84)
                      +..++++++++++++.+....+..|.+.....          ...-.+.+|+.+...++++.+|+.+.+||+++..
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~  236 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA  236 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccc
Confidence            67889999999999999999999998875543          3445678888888899999999999999998654

>KOG1064|consensus

Probab=98.18  E-value=4.2e-06  Score=55.15  Aligned_cols=70  Identities=19%  Similarity=0.531  Sum_probs=54.6

Q ss_pred             ccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCCCCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880          9 VHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus         9 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                      ..| .+.+.++++-|..++|++|+.+|.+++||++........-.  +. ....+++++..|.|+||++..-..
T Consensus      2333 ~~H-~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--~~-~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2333 TCH-DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--LD-TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred             eec-CCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--hh-hhheeeccCcccceEEEEccccch
Confidence            345 88899999999999999999999999999987554111111  33 456899999999999999876543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.16  E-value=0.00019  Score=40.15  Aligned_cols=65  Identities=17%  Similarity=0.165  Sum_probs=48.4

Q ss_pred             CEEEEEEccCCCEEEEeC-CCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEec-CCCcEEEEeCCC
Q psy16880         15 AVRSISFCSKQHTLISGG-DDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGG-DDGSICMWNLNS   79 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~~~~-~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~-~~~~i~~~~~~~   79 (84)
                      ....+.++|+++.+++++ .++.+.+|++.....          ......++++|+++.+++++ .++.|.+||+.+
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~  157 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD  157 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence            446789999999877665 477899999863211          23467788999998886554 568999999875

>KOG2111|consensus

Probab=98.14  E-value=7.4e-05  Score=41.67  Aligned_cols=58  Identities=16%  Similarity=0.209  Sum_probs=45.4

Q ss_pred             CEEEE-eCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCc-EEEEeCCCCeec
Q psy16880         26 HTLIS-GGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGS-ICMWNLNSKLCD   83 (84)
Q Consensus        26 ~~l~~-~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~   83 (84)
                      ..|+. |...|.+.+-|+.....         .+.|.+++..-+|.++++++..|+ |++||..++..+
T Consensus       149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l  217 (346)
T KOG2111|consen  149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLL  217 (346)
T ss_pred             eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEe
Confidence            34443 45567888888753322         778999999999999999999987 889999988765

>KOG1064|consensus

Probab=98.13  E-value=9.7e-06  Score=53.61  Aligned_cols=36  Identities=25%  Similarity=0.696  Sum_probs=31.6

Q ss_pred             CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         48 DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        48 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      .+.++++++.|+...+++|+.+|.+++||++..+..
T Consensus      2336 ~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~ 2371 (2439)
T KOG1064|consen 2336 DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLR 2371 (2439)
T ss_pred             CCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHH
Confidence            567889999999999999999999999999876643

>KOG2695|consensus

Probab=98.10  E-value=2.6e-06  Score=47.83  Aligned_cols=70  Identities=24%  Similarity=0.464  Sum_probs=56.4

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----------CCCEEEEEEcc-CCCEEEEecCCCcEEEEeCCCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----------DSAVRSISFCS-KQRTLISGGDDGSICMWNLNSK   80 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----------~~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~   80 (84)
                      .+.|+++.|...+.++..|..++.+...|++....           .+.|++++.-. .+..+.+.+.+|+|++||.+.-
T Consensus       252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~  331 (425)
T KOG2695|consen  252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT  331 (425)
T ss_pred             chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhh
Confidence            57788889988899999999999999999986643           55666666554 5567788888999999999865


Q ss_pred             ee
Q psy16880         81 LC   82 (84)
Q Consensus        81 ~~   82 (84)
                      ++
T Consensus       332 K~  333 (425)
T KOG2695|consen  332 KC  333 (425)
T ss_pred             hc
Confidence            54

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.09  E-value=0.0001  Score=42.21  Aligned_cols=79  Identities=10%  Similarity=0.121  Sum_probs=52.9

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEe----CCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCC
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISG----GDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDG   70 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~   70 (84)
                      +.+++++.. .+. ..++.+|+++.+...    .....+.++|..+...        ...+.++.|+++|+.+..+..++
T Consensus       260 kvv~~I~~~-G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~  337 (369)
T PF02239_consen  260 KVVKTIPTQ-GGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDG  337 (369)
T ss_dssp             SEEEEEE-S-SSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--
T ss_pred             eEEEEEECC-CCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecC
Confidence            466777765 555 677889999988877    5567999999988755        34599999999999776655543


Q ss_pred             --cEEEEeCCCCeec
Q psy16880         71 --SICMWNLNSKLCD   83 (84)
Q Consensus        71 --~i~~~~~~~~~~~   83 (84)
                        .|.+||..+.+.+
T Consensus       338 ~~~i~v~D~~Tl~~~  352 (369)
T PF02239_consen  338 NGAIVVYDAKTLKEK  352 (369)
T ss_dssp             TTEEEEEETTTTEEE
T ss_pred             CCEEEEEECCCcEEE
Confidence              6999999988765

...

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.08  E-value=0.00012  Score=42.08  Aligned_cols=69  Identities=16%  Similarity=0.170  Sum_probs=49.0

Q ss_pred             CcCEEEEEEccCCCEEEEeCCC---CcEEEEeCCCCCC------CCCEEEEEEccCCCEEEE-ecCCC--cEEEEeCCCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDD---GSICMWNLNSKLC------DSAVRSISFCSKQRTLIS-GGDDG--SICMWNLNSK   80 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~---~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~-~~~~~--~i~~~~~~~~   80 (84)
                      ...+...+|+|+++.++.....   ..+.+||+.++..      ...+....|+|+++.++. ...++  .|.+|++.++
T Consensus       189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~  268 (417)
T TIGR02800       189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK  268 (417)
T ss_pred             CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCC
Confidence            4567888999999988765432   4788999876643      345667899999987764 34333  5888888765


Q ss_pred             e
Q psy16880         81 L   81 (84)
Q Consensus        81 ~   81 (84)
                      +
T Consensus       269 ~  269 (417)
T TIGR02800       269 Q  269 (417)
T ss_pred             C
Confidence            4

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4497|consensus

Probab=98.08  E-value=3.4e-05  Score=43.45  Aligned_cols=51  Identities=22%  Similarity=0.384  Sum_probs=34.9

Q ss_pred             CcCEEEEEEccCCCE-EEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEE
Q psy16880         13 NSAVRSISFCSKQHT-LISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTL   63 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~-l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~   63 (84)
                      ...+..++|+|+|+. |.+...+-.+.+|.+.+...      ...+-.++|+|+++..
T Consensus        91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~  148 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFC  148 (447)
T ss_pred             CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCcee
Confidence            567889999999964 55666777999999987755      2333444555554433

>KOG4532|consensus

Probab=98.02  E-value=0.00044  Score=38.18  Aligned_cols=68  Identities=12%  Similarity=0.094  Sum_probs=51.0

Q ss_pred             cCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------------CCCEEEEEEccCCC--EEEEecCCCcEEEEeCCC
Q psy16880         14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------------DSAVRSISFCSKQR--TLISGGDDGSICMWNLNS   79 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------------~~~v~~~~~~~~~~--~~~~~~~~~~i~~~~~~~   79 (84)
                      +.-++.+|+.....++.+..|+.+.+||++....            .+.++.+.|++.+.  ++.-.-.-+.+++-|+++
T Consensus       204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~  283 (344)
T KOG4532|consen  204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN  283 (344)
T ss_pred             CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence            3446888999999999999999999999986544            66789999998653  233333345678888776


Q ss_pred             Ce
Q psy16880         80 KL   81 (84)
Q Consensus        80 ~~   81 (84)
                      .+
T Consensus       284 ~~  285 (344)
T KOG4532|consen  284 YV  285 (344)
T ss_pred             Cc
Confidence            54

>KOG2695|consensus

Probab=98.01  E-value=1.6e-05  Score=44.86  Aligned_cols=71  Identities=24%  Similarity=0.445  Sum_probs=53.5

Q ss_pred             CcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEc-----cCCCEEEEecCCCcEEEEeCCC
Q psy16880         13 NSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFC-----SKQRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus        13 ~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~   79 (84)
                      .+.|.++..-. +++.|.+.+.++.+++||.+..+.       +++|...++.     +....+++++.|...++|.++.
T Consensus       298 ~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~  377 (425)
T KOG2695|consen  298 DSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS  377 (425)
T ss_pred             CcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEeccc
Confidence            66677776666 778899999999999999985544       5555554443     3456788899999999999987


Q ss_pred             Ceec
Q psy16880         80 KLCD   83 (84)
Q Consensus        80 ~~~~   83 (84)
                      +..+
T Consensus       378 ghLl  381 (425)
T KOG2695|consen  378 GHLL  381 (425)
T ss_pred             Ccee
Confidence            6543

>smart00320 WD40 WD40 repeats

Probab=97.99  E-value=3.5e-05  Score=28.51  Aligned_cols=29  Identities=34%  Similarity=0.716  Sum_probs=25.8

Q ss_pred             CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880         48 DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus        48 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      ...+.++.|.+.+..+++++.|+.+.+|+
T Consensus        12 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       12 TGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             CCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45789999999889999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1240|consensus

Probab=97.98  E-value=0.00043  Score=44.80  Aligned_cols=70  Identities=20%  Similarity=0.379  Sum_probs=57.4

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------------------------------------------
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------------------------------------------   47 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------------------------------------------   47 (84)
                      .+.+.++...+.+..++.++.||.+.+.+++....                                             
T Consensus      1098 ~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~ 1177 (1431)
T KOG1240|consen 1098 GSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVS 1177 (1431)
T ss_pred             CCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEE
Confidence            56788888888888888889999998888765211                                             


Q ss_pred             -----------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880         48 -----------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        48 -----------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                                       .+.|+.++.+|.+.+++.|...|.+.+||++=+.+
T Consensus      1178 ~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~ 1229 (1431)
T KOG1240|consen 1178 WDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP 1229 (1431)
T ss_pred             ecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCce
Confidence                             56789999999999999999999999999875443

>KOG1409|consensus

Probab=97.97  E-value=1.7e-05  Score=44.67  Aligned_cols=41  Identities=34%  Similarity=0.634  Sum_probs=32.4

Q ss_pred             EEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC
Q psy16880          6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC   47 (84)
Q Consensus         6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~   47 (84)
                      ..+++| .+.|..+.+-+....+.+++.|+.+.+|+++....
T Consensus       234 ~el~gh-~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~  274 (404)
T KOG1409|consen  234 YELQGH-NDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV  274 (404)
T ss_pred             eeeccc-hhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence            345666 77778887777788999999999999999975533

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.97  E-value=0.00058  Score=37.65  Aligned_cols=70  Identities=19%  Similarity=0.345  Sum_probs=51.6

Q ss_pred             CcCEEEEEEccCCCEEEEeCCC-C----------cEEEEeCCCCCC----------------------------------
Q psy16880         13 NSAVRSISFCSKQHTLISGGDD-G----------SICMWNLNSKLC----------------------------------   47 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~-~----------~~~~~d~~~~~~----------------------------------   47 (84)
                      ...|.++.|+|.-++|+.|+.. .          -+..|.+....+                                  
T Consensus       147 p~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~  226 (282)
T PF15492_consen  147 PHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQG  226 (282)
T ss_pred             CCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccc
Confidence            5678899999987877666431 1          234555443322                                  


Q ss_pred             --CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880         48 --DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        48 --~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                        +..|..++.+|++..+++...+|.|.+|++.+-+.
T Consensus       227 ~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  227 QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence              45688999999999999999999999999886554

>KOG1334|consensus

Probab=97.97  E-value=1.5e-05  Score=46.57  Aligned_cols=71  Identities=20%  Similarity=0.405  Sum_probs=56.4

Q ss_pred             eccCCCc--CEEEEE-EccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880          8 FVHSNNS--AVRSIS-FCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNL   77 (84)
Q Consensus         8 ~~~~~~~--~v~~~~-~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (84)
                      |++| .+  .|..+- |.|...++++|+..|.|.+|+-.+...       +.-|.|+.=+|..+.+++++-|.-|+||-+
T Consensus       387 YKGH-rN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  387 YKGH-RNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             hccc-ccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence            5666 43  344443 456789999999999999999887766       457888888899999999999999999987


Q ss_pred             CC
Q psy16880         78 NS   79 (84)
Q Consensus        78 ~~   79 (84)
                      .+
T Consensus       466 ~~  467 (559)
T KOG1334|consen  466 LT  467 (559)
T ss_pred             Cc
Confidence            43

>KOG4190|consensus

Probab=97.96  E-value=1.4e-05  Score=47.78  Aligned_cols=72  Identities=21%  Similarity=0.485  Sum_probs=54.8

Q ss_pred             EEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------------CCCEEEEEEccCCCEEEEecCCC
Q psy16880          5 IHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------------DSAVRSISFCSKQRTLISGGDDG   70 (84)
Q Consensus         5 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------------~~~v~~~~~~~~~~~~~~~~~~~   70 (84)
                      +..+.+| +..|..++--.+...+++++.|..+++|.++...-              ...|..+.|-.+-+.++++  |+
T Consensus       728 L~nf~GH-~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~  804 (1034)
T KOG4190|consen  728 LCNFTGH-QEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG  804 (1034)
T ss_pred             eecccCc-HHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence            4466777 88888887777788999999999999999975422              5567777777666666554  78


Q ss_pred             cEEEEeCCC
Q psy16880         71 SICMWNLNS   79 (84)
Q Consensus        71 ~i~~~~~~~   79 (84)
                      -|++||+=-
T Consensus       805 giHlWDPFi  813 (1034)
T KOG4190|consen  805 GIHLWDPFI  813 (1034)
T ss_pred             cceeecccc
Confidence            899999743

>KOG4640|consensus

Probab=97.96  E-value=0.00011  Score=44.21  Aligned_cols=69  Identities=17%  Similarity=0.276  Sum_probs=53.5

Q ss_pred             cCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCE-EEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880         14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAV-RSISFCSKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                      -.+.-+.|+|.-..++.+..+|.+.+...+-.+.      ...+ ++.+|.|+|+.++.|-.||+|.+-|..++..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence            3567889999999999999888775554442222      2233 5999999999999999999999999887654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.95  E-value=9e-05  Score=30.21  Aligned_cols=31  Identities=29%  Similarity=0.618  Sum_probs=28.5

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLN   43 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~   43 (84)
                      ...|.+++|+|...+++.+..+|.+.++.++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4679999999999999999999999999885

>KOG0974|consensus

Probab=97.95  E-value=5.6e-05  Score=47.34  Aligned_cols=68  Identities=21%  Similarity=0.463  Sum_probs=58.5

Q ss_pred             cCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCC
Q psy16880         10 HSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSK   80 (84)
Q Consensus        10 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   80 (84)
                      +| ...|+.+.+.|.  .+++++.|..+++|+.+....       ...+..+...+.....++++.|+.+++|++...
T Consensus       216 gH-saRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  216 GH-SARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             cc-cceeEEEEeccc--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            46 889999999987  999999999999997664433       678899999999999999999999999987653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.94  E-value=0.00016  Score=42.03  Aligned_cols=72  Identities=13%  Similarity=0.162  Sum_probs=47.8

Q ss_pred             EeccCCCcCEEEEEEccCCCEEEEe-CCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880          7 TFVHSNNSAVRSISFCSKQHTLISG-GDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~   79 (84)
                      .+..+ ...+....|+|+++.++.. ..++...+|+++....      ... ....|+|+++.++..+.++ +.+||+.+
T Consensus       286 ~lt~~-~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-~~~~~SpDG~~ia~~~~~~-i~~~Dl~~  362 (429)
T PRK01742        286 QLTSG-AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG-YSAQISADGKTLVMINGDN-VVKQDLTS  362 (429)
T ss_pred             eeccC-CCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-CCccCCCCCCEEEEEcCCC-EEEEECCC
Confidence            34444 5556788999999876644 4567788887753221      111 4567899999888776654 55688876


Q ss_pred             Ce
Q psy16880         80 KL   81 (84)
Q Consensus        80 ~~   81 (84)
                      ++
T Consensus       363 g~  364 (429)
T PRK01742        363 GS  364 (429)
T ss_pred             CC
Confidence            64

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.91  E-value=0.00029  Score=41.35  Aligned_cols=69  Identities=13%  Similarity=0.163  Sum_probs=46.6

Q ss_pred             CcCEEEEEEccCCCEEEEeCC-C--CcEEEEeCCCCCC------CCCEEEEEEccCCCEEEE-ecCCCc--EEEEeCCCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGD-D--GSICMWNLNSKLC------DSAVRSISFCSKQRTLIS-GGDDGS--ICMWNLNSK   80 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~-~--~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~-~~~~~~--i~~~~~~~~   80 (84)
                      ...+....|+|+++.++..+. +  ..+.++|+.++..      ........|+|+++.++. ...++.  |.++|+.++
T Consensus       217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg  296 (448)
T PRK04792        217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK  296 (448)
T ss_pred             CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC
Confidence            345678899999998776532 2  3577788866543      334457899999997764 444554  777787665


Q ss_pred             e
Q psy16880         81 L   81 (84)
Q Consensus        81 ~   81 (84)
                      +
T Consensus       297 ~  297 (448)
T PRK04792        297 A  297 (448)
T ss_pred             C
Confidence            4

>KOG1334|consensus

Probab=97.91  E-value=5.3e-05  Score=44.39  Aligned_cols=41  Identities=22%  Similarity=0.407  Sum_probs=36.0

Q ss_pred             EEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC
Q psy16880          6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC   47 (84)
Q Consensus         6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~   47 (84)
                      ..+..| .+.|..+.|+..|..+++++.+..+.+||......
T Consensus       136 ~kL~~H-~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~  176 (559)
T KOG1334|consen  136 KKLNKH-KGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP  176 (559)
T ss_pred             hcccCC-CCccceeeecccCceeeccCccceEEeehhhccCc
Confidence            456778 99999999999999999999999999999876544

>KOG1645|consensus

Probab=97.91  E-value=6.5e-05  Score=43.15  Aligned_cols=72  Identities=13%  Similarity=0.200  Sum_probs=58.5

Q ss_pred             ccCCCcCEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccC-CCEEEEecCCCcEEEEeCCCC
Q psy16880          9 VHSNNSAVRSISFCSKQH-TLISGGDDGSICMWNLNSKLC------DSAVRSISFCSK-QRTLISGGDDGSICMWNLNSK   80 (84)
Q Consensus         9 ~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~   80 (84)
                      ..+ ...|..++++|..+ ++..++.+..+.+.|+.+...      ...+..++|.-+ .+.+..|...|.+.+||++..
T Consensus       190 p~~-g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  190 PGE-GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             ccc-chhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence            344 56789999999776 788899999999999987655      678889999864 467788888999999999754


Q ss_pred             e
Q psy16880         81 L   81 (84)
Q Consensus        81 ~   81 (84)
                      .
T Consensus       269 ~  269 (463)
T KOG1645|consen  269 E  269 (463)
T ss_pred             C
Confidence            3

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.88  E-value=0.00036  Score=40.63  Aligned_cols=69  Identities=12%  Similarity=0.103  Sum_probs=45.2

Q ss_pred             CcCEEEEEEccCCCEEEEeCC-CCcEEEEeCC--CCCC------CCCEEEEEEccCCCEEEEecCCC---cEEEEeCCCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGD-DGSICMWNLN--SKLC------DSAVRSISFCSKQRTLISGGDDG---SICMWNLNSK   80 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~-~~~~~~~d~~--~~~~------~~~v~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~   80 (84)
                      .+......|+|+++.++..+. .+...+|.+.  ....      .......+|+|+++.++..+.++   .|.+||+.++
T Consensus       283 ~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g  362 (427)
T PRK02889        283 SGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG  362 (427)
T ss_pred             CCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence            344456789999998765543 4566666553  2222      22234578999999888766543   5889998765


Q ss_pred             e
Q psy16880         81 L   81 (84)
Q Consensus        81 ~   81 (84)
                      +
T Consensus       363 ~  363 (427)
T PRK02889        363 Q  363 (427)
T ss_pred             C
Confidence            4

>KOG4190|consensus

Probab=97.84  E-value=8.4e-05  Score=44.67  Aligned_cols=79  Identities=16%  Similarity=0.296  Sum_probs=54.3

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------------------------------
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------------------------------   47 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------------------------------   47 (84)
                      ..+..+++.| +.+|.++.|-.+.+.++  +.|+-+.+||...+..                                  
T Consensus       774 saCQfTY~aH-kk~i~~igfL~~lr~i~--ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsae  850 (1034)
T KOG4190|consen  774 SACQFTYQAH-KKPIHDIGFLADLRSIA--SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAE  850 (1034)
T ss_pred             ceeeeEhhhc-cCcccceeeeeccceee--eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccch
Confidence            3477788888 88999988877776654  4567788898754432                                  


Q ss_pred             -------------------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         48 -------------------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        48 -------------------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                                               +..+++++..+.|++++.+-..|.|.+.|.++++.+
T Consensus       851 STVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vI  911 (1034)
T KOG4190|consen  851 STVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVI  911 (1034)
T ss_pred             hhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCcee
Confidence                                     234566666666666666666677777777766654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.81  E-value=0.0011  Score=38.80  Aligned_cols=68  Identities=9%  Similarity=0.082  Sum_probs=44.3

Q ss_pred             cCEEEEEEccCCCEEEEeC-CCCc--EEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCC---cEEEEeCCCCe
Q psy16880         14 SAVRSISFCSKQHTLISGG-DDGS--ICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDG---SICMWNLNSKL   81 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~~~~-~~~~--~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~   81 (84)
                      ......+|+|+++.++..+ ..+.  +.++|+.....      .......+|+|+++.++..+.++   .|.+|++.+++
T Consensus       292 ~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~  371 (433)
T PRK04922        292 GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS  371 (433)
T ss_pred             CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence            3445679999999777654 3444  44555544333      22344689999999887654432   58899987654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.80  E-value=0.001  Score=38.92  Aligned_cols=69  Identities=12%  Similarity=0.150  Sum_probs=47.4

Q ss_pred             CcCEEEEEEccCCCEEEEeCC---CCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecC---CCcEEEEeCCCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGD---DGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGD---DGSICMWNLNSK   80 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~---~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~   80 (84)
                      ...+....|+|+++.++....   ...+.+||+..+..      ...+....|+|+++.++....   ...+.++++.++
T Consensus       326 ~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g  405 (428)
T PRK01029        326 YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK  405 (428)
T ss_pred             CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            345567889999998775533   23678889876654      235677899999988764332   345778887765


Q ss_pred             e
Q psy16880         81 L   81 (84)
Q Consensus        81 ~   81 (84)
                      +
T Consensus       406 ~  406 (428)
T PRK01029        406 K  406 (428)
T ss_pred             C
Confidence            4

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.80  E-value=0.0012  Score=38.63  Aligned_cols=69  Identities=14%  Similarity=0.154  Sum_probs=45.2

Q ss_pred             CcCEEEEEEccCCCEEEEeCC-CCcEEEE--eCCCCCC------CCCEEEEEEccCCCEEEEecCC---CcEEEEeCCCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGD-DGSICMW--NLNSKLC------DSAVRSISFCSKQRTLISGGDD---GSICMWNLNSK   80 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~-~~~~~~~--d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~   80 (84)
                      ...+....|+|+++.++..+. .+...+|  |+.....      ........|+|+++.++..+.+   ..+.+||+.++
T Consensus       286 ~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g  365 (429)
T PRK03629        286 RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG  365 (429)
T ss_pred             CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence            345678899999998765554 3444555  5544332      2345668899999988765543   34778888765


Q ss_pred             e
Q psy16880         81 L   81 (84)
Q Consensus        81 ~   81 (84)
                      +
T Consensus       366 ~  366 (429)
T PRK03629        366 G  366 (429)
T ss_pred             C
Confidence            4

>KOG2041|consensus

Probab=97.79  E-value=0.00021  Score=44.17  Aligned_cols=70  Identities=20%  Similarity=0.297  Sum_probs=58.7

Q ss_pred             EEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880          6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus         6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      +++++| .+.|..+.|+...+.|.+...+|.+.+|-+-.+.-         .+.|.+++|..+|..+.-+-.||.+.+=.
T Consensus        65 QtLeGH-~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs  143 (1189)
T KOG2041|consen   65 QTLEGH-NASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS  143 (1189)
T ss_pred             hhhccC-cceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence            578899 99999999999999999999999999998865544         56799999999998887777777766543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.78  E-value=0.0011  Score=37.95  Aligned_cols=67  Identities=6%  Similarity=0.108  Sum_probs=51.3

Q ss_pred             EEEEEccCCCEEEEeC----------CCCcEEEEeCCCCCC------CCCEEEEEEccCCC-EEEEec-CCCcEEEEeCC
Q psy16880         17 RSISFCSKQHTLISGG----------DDGSICMWNLNSKLC------DSAVRSISFCSKQR-TLISGG-DDGSICMWNLN   78 (84)
Q Consensus        17 ~~~~~~~~~~~l~~~~----------~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~-~~~~~~-~~~~i~~~~~~   78 (84)
                      .-++++++++.+....          ....+.++|..+.+.      ...+..++++|+++ .+++.. .++.+.+.|..
T Consensus       251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~  330 (352)
T TIGR02658       251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAE  330 (352)
T ss_pred             eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence            3489999888776632          124688889877766      67889999999998 776555 47889999999


Q ss_pred             CCeec
Q psy16880         79 SKLCD   83 (84)
Q Consensus        79 ~~~~~   83 (84)
                      +++.+
T Consensus       331 t~k~i  335 (352)
T TIGR02658       331 TGKEL  335 (352)
T ss_pred             CCeEE
Confidence            88765

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4497|consensus

Probab=97.78  E-value=0.00064  Score=38.59  Aligned_cols=68  Identities=10%  Similarity=0.317  Sum_probs=54.3

Q ss_pred             CEEEEEEccCCCEEEEeCCC--CcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880         15 AVRSISFCSKQHTLISGGDD--GSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~~~~~~--~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                      .+.-++|++|..++++-+..  ..+-+||++..+.      ..+|....|.|..+.++.+.....+.+|.+....+
T Consensus       320 g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~  395 (447)
T KOG4497|consen  320 GAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRV  395 (447)
T ss_pred             ccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceE
Confidence            36788999999998887543  4677899987766      67899999999988888887777899998765443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.76  E-value=0.0009  Score=39.15  Aligned_cols=68  Identities=12%  Similarity=0.156  Sum_probs=44.2

Q ss_pred             CEEEEEEccCCCEEEEeC-CCCcEEEEeC--CC--CCC------CCCEEEEEEccCCCEEEEecCC---CcEEEEeCCCC
Q psy16880         15 AVRSISFCSKQHTLISGG-DDGSICMWNL--NS--KLC------DSAVRSISFCSKQRTLISGGDD---GSICMWNLNSK   80 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~~~~-~~~~~~~~d~--~~--~~~------~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~   80 (84)
                      .....+|+|+|+.++..+ .++...+|.+  ..  ...      ...+....|+|+++.++....+   ..|.+||+.++
T Consensus       282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g  361 (428)
T PRK01029        282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG  361 (428)
T ss_pred             CcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence            345678999998766543 4565555543  21  111      3456778999999988766543   35889998766


Q ss_pred             ee
Q psy16880         81 LC   82 (84)
Q Consensus        81 ~~   82 (84)
                      +.
T Consensus       362 ~~  363 (428)
T PRK01029        362 RD  363 (428)
T ss_pred             Ce
Confidence            53

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.72  E-value=0.0016  Score=37.01  Aligned_cols=64  Identities=16%  Similarity=0.236  Sum_probs=51.6

Q ss_pred             EEEEEEccCCCEEEEeCCCC-cEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecC-CCcEEEEeCCC
Q psy16880         16 VRSISFCSKQHTLISGGDDG-SICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGD-DGSICMWNLNS   79 (84)
Q Consensus        16 v~~~~~~~~~~~l~~~~~~~-~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~~~   79 (84)
                      +....+.|+++++++....- .+.+|++..+..          ....+++.|+|+++...+.+. +++|.+|...+
T Consensus       147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~  222 (346)
T COG2706         147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP  222 (346)
T ss_pred             cceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence            67888999999988875433 688899886554          567899999999998877765 88999998765

>PRK05137 tolB translocation protein TolB; Provisional

Probab=97.70  E-value=0.0013  Score=38.50  Aligned_cols=69  Identities=16%  Similarity=0.214  Sum_probs=46.2

Q ss_pred             CcCEEEEEEccCCCEEE-EeCCCCc--EEEEeCCCCCC------CCCEEEEEEccCCCEEEEecC-CC--cEEEEeCCCC
Q psy16880         13 NSAVRSISFCSKQHTLI-SGGDDGS--ICMWNLNSKLC------DSAVRSISFCSKQRTLISGGD-DG--SICMWNLNSK   80 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~-~~~~~~~--~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~-~~--~i~~~~~~~~   80 (84)
                      .+.+...+|+|+++.++ +.+.++.  +.++|+.....      ........|+|+++.++..+. ++  .|.++|..++
T Consensus       245 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~  324 (435)
T PRK05137        245 PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS  324 (435)
T ss_pred             CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence            45667889999998764 5555554  56667765544      334566899999998876653 33  5777777654


Q ss_pred             e
Q psy16880         81 L   81 (84)
Q Consensus        81 ~   81 (84)
                      +
T Consensus       325 ~  325 (435)
T PRK05137        325 N  325 (435)
T ss_pred             C
Confidence            3

>KOG3617|consensus

Probab=97.70  E-value=3.6e-05  Score=48.10  Aligned_cols=63  Identities=14%  Similarity=0.342  Sum_probs=55.4

Q ss_pred             EEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCC
Q psy16880         16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLN   78 (84)
Q Consensus        16 v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~   78 (84)
                      +.+++|+|..-.|++|-..+.+.+|..++...       +..|..+.|+++|..++++..-|.+.+|...
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            56789999999999999999999998876544       6789999999999999999999999999754

>KOG2321|consensus

Probab=97.70  E-value=0.0002  Score=42.97  Aligned_cols=67  Identities=15%  Similarity=0.334  Sum_probs=53.6

Q ss_pred             CEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccC--CCEEEEecCCCcEEEEeCCCCee
Q psy16880         15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSK--QRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                      .|.+++|..+|-.++.|...|.+.+||++...+        +-+|-.+.|.+.  +..+++. ....+++||-.+++.
T Consensus       230 svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~  306 (703)
T KOG2321|consen  230 SVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKP  306 (703)
T ss_pred             cceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCc
Confidence            389999998899999999999999999998766        567888888765  3334443 456799999887765

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.66  E-value=0.0022  Score=36.98  Aligned_cols=66  Identities=15%  Similarity=0.177  Sum_probs=44.6

Q ss_pred             CEEEEEEccCCCEEEEeCC-CC--cEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCC---cEEEEeCCCC
Q psy16880         15 AVRSISFCSKQHTLISGGD-DG--SICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDG---SICMWNLNSK   80 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~~~~~-~~--~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~   80 (84)
                      ......|+|+++.++..+. .+  .+.++|+.....      ...+....|+|+++.++....++   .|.++|+.++
T Consensus       279 ~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~  356 (417)
T TIGR02800       279 IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG  356 (417)
T ss_pred             CCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC
Confidence            3446689999987765443 33  456667654433      34456788999999888777654   6888887654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.64  E-value=0.0013  Score=42.47  Aligned_cols=66  Identities=11%  Similarity=0.114  Sum_probs=54.1

Q ss_pred             EEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------------------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880         17 RSISFCSKQHTLISGGDDGSICMWNLNSKLC--------------------DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      ..+++++++..+++-..++.|++||..+...                    -....+++++++++.+++-+.++.|++||
T Consensus       807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid  886 (1057)
T PLN02919        807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD  886 (1057)
T ss_pred             ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence            4778899999999999999999999875433                    12567899999999888888889999999


Q ss_pred             CCCCee
Q psy16880         77 LNSKLC   82 (84)
Q Consensus        77 ~~~~~~   82 (84)
                      +.+++.
T Consensus       887 ~~~~~~  892 (1057)
T PLN02919        887 LNKGEA  892 (1057)
T ss_pred             CCCCcc
Confidence            987653

>KOG1275|consensus

Probab=97.63  E-value=0.00057  Score=43.15  Aligned_cols=73  Identities=21%  Similarity=0.390  Sum_probs=55.5

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCC---------CCcEEEEeCCCCCC--------------------------
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGD---------DGSICMWNLNSKLC--------------------------   47 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------~~~~~~~d~~~~~~--------------------------   47 (84)
                      +.++++..| .+.|.+++.  .|..|++++.         |..+.+||++....                          
T Consensus       208 ~~iht~~aH-s~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~  284 (1118)
T KOG1275|consen  208 ETIHTFDAH-SGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVT  284 (1118)
T ss_pred             ceeeeeecc-ccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEE
Confidence            456777777 888877655  6888887754         55678899875433                          


Q ss_pred             ---------------------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCC
Q psy16880         48 ---------------------------DSAVRSISFCSKQRTLISGGDDGSICMWNLN   78 (84)
Q Consensus        48 ---------------------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~   78 (84)
                                                 .+.+..+.+++++..++.+..+|.|.+|..+
T Consensus       285 S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  285 SQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             ecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence                                       3458889999999999999999999999743

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.58  E-value=0.0039  Score=35.80  Aligned_cols=78  Identities=9%  Similarity=0.025  Sum_probs=54.1

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCC----------CCcEEEEeCCCCCC------CC--------CEEEEEEcc
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGD----------DGSICMWNLNSKLC------DS--------AVRSISFCS   58 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------~~~~~~~d~~~~~~------~~--------~v~~~~~~~   58 (84)
                      +.+.+++.- ..+- .+ .+|+++.+..+..          +..+.+||..+...      +.        ....++++|
T Consensus        38 ~v~g~i~~G-~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~  114 (352)
T TIGR02658        38 RVLGMTDGG-FLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP  114 (352)
T ss_pred             EEEEEEEcc-CCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC
Confidence            444555443 3332 24 8999987766654          77999999988766      11        123788999


Q ss_pred             CCCEEEEec-C-CCcEEEEeCCCCeec
Q psy16880         59 KQRTLISGG-D-DGSICMWNLNSKLCD   83 (84)
Q Consensus        59 ~~~~~~~~~-~-~~~i~~~~~~~~~~~   83 (84)
                      +++.++... . +..+.+.|+.+++.+
T Consensus       115 dgk~l~V~n~~p~~~V~VvD~~~~kvv  141 (352)
T TIGR02658       115 DNKTLLFYQFSPSPAVGVVDLEGKAFV  141 (352)
T ss_pred             CCCEEEEecCCCCCEEEEEECCCCcEE
Confidence            999887654 3 678999999988764

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG3621|consensus

Probab=97.55  E-value=0.00049  Score=42.09  Aligned_cols=67  Identities=21%  Similarity=0.351  Sum_probs=54.5

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~   79 (84)
                      .+.+..+..+++..+.++|+..+.|.++.++....             ...|++++|+++++.+.+|...|++..-.+.+
T Consensus        76 ~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   76 TGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            44566677788888899999999999998875433             46799999999999999999999988766554

>KOG0309|consensus

Probab=97.54  E-value=0.00063  Score=42.29  Aligned_cols=75  Identities=17%  Similarity=0.354  Sum_probs=58.6

Q ss_pred             EEEeccCCCcCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          5 IHTFVHSNNSAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         5 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      ...+-+| ...|..+-|+|+. ..+++++-+..+..||++....        ...-..+.|+.....++..++.+.|.+|
T Consensus       107 ef~lhgh-sraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vw  185 (1081)
T KOG0309|consen  107 EFVLHGH-SRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVW  185 (1081)
T ss_pred             EEEEecC-ccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEE
Confidence            3455667 7889999999954 5888999999999999987655        4556778888655566677778889999


Q ss_pred             eCCCC
Q psy16880         76 NLNSK   80 (84)
Q Consensus        76 ~~~~~   80 (84)
                      |.+.+
T Consensus       186 d~r~g  190 (1081)
T KOG0309|consen  186 DLRKG  190 (1081)
T ss_pred             eccCC
Confidence            98754

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.49  E-value=0.0024  Score=40.84  Aligned_cols=63  Identities=16%  Similarity=0.258  Sum_probs=52.2

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEE----eCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMW----NLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~----d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      .+.|.++.|.++...++.+..+|.+.+.    +......      ...|.+++|+|++..++.+..++++.+-
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~m  147 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLM  147 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEE
Confidence            4678999999999999999999999888    5544433      7899999999999999988888776654

>KOG2079|consensus

Probab=97.48  E-value=0.0015  Score=41.97  Aligned_cols=63  Identities=24%  Similarity=0.510  Sum_probs=47.1

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGDDGSICMWNL   77 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (84)
                      .++|.+++|+.+|..+++|-.+|.+.+||+...+.          ...+-.+.+..++..++++...|.  +|.+
T Consensus       130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            57899999999999999999999999999987655          233444555555556777766554  5543

>KOG4714|consensus

Probab=97.48  E-value=0.00048  Score=37.84  Aligned_cols=37  Identities=16%  Similarity=0.469  Sum_probs=31.8

Q ss_pred             eccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCC
Q psy16880          8 FVHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSK   45 (84)
Q Consensus         8 ~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~   45 (84)
                      +..| +.++..+-|+| ++..|++++++|.+-.||..+.
T Consensus       219 l~ah-k~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~  256 (319)
T KOG4714|consen  219 LKAH-KAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT  256 (319)
T ss_pred             HHHh-hhhhhheeccCCCchheeEecCCCcEEEEcCCCc
Confidence            4456 88899999999 6789999999999999998854

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.46  E-value=0.0067  Score=35.40  Aligned_cols=68  Identities=21%  Similarity=0.189  Sum_probs=44.1

Q ss_pred             cCEEEEEEccCCCEEE-EeCCCC--cEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecC-CC--cEEEEeCCCCe
Q psy16880         14 SAVRSISFCSKQHTLI-SGGDDG--SICMWNLNSKLC------DSAVRSISFCSKQRTLISGGD-DG--SICMWNLNSKL   81 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~-~~~~~~--~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~-~~--~i~~~~~~~~~   81 (84)
                      +.+...+|+|+++.++ +...++  .+.++|+.++..      ........|+|+++.++..+. ++  .|.++++.+++
T Consensus       243 g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~  322 (430)
T PRK00178        243 GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR  322 (430)
T ss_pred             CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            3445689999998776 444444  566778876544      334556789999987765543 33  46667776554

>KOG0882|consensus

Probab=97.41  E-value=0.0021  Score=37.90  Aligned_cols=71  Identities=13%  Similarity=0.171  Sum_probs=61.5

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------------------CCCEEEEEEccCCCEEEEecCCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------------------DSAVRSISFCSKQRTLISGGDDG   70 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------------------~~~v~~~~~~~~~~~~~~~~~~~   70 (84)
                      ..+|.++.+.+.+....+....|.+.-|.......                      .....++.|+|++..+.+-..|.
T Consensus       144 ~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Dr  223 (558)
T KOG0882|consen  144 FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDR  223 (558)
T ss_pred             cCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCccc
Confidence            89999999999999999999999999998873111                      56788999999999999988999


Q ss_pred             cEEEEeCCCCeec
Q psy16880         71 SICMWNLNSKLCD   83 (84)
Q Consensus        71 ~i~~~~~~~~~~~   83 (84)
                      .|++++.++++.+
T Consensus       224 kVR~F~~KtGklv  236 (558)
T KOG0882|consen  224 KVRGFVFKTGKLV  236 (558)
T ss_pred             EEEEEEeccchhh
Confidence            9999999988754

>KOG2079|consensus

Probab=97.41  E-value=0.00061  Score=43.59  Aligned_cols=60  Identities=17%  Similarity=0.361  Sum_probs=48.8

Q ss_pred             CCCEEEEeCCCCcEEEEeCCCC-CC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         24 KQHTLISGGDDGSICMWNLNSK-LC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        24 ~~~~l~~~~~~~~~~~~d~~~~-~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      .+..++.|+..|.+...|.... ..       ..+|.+++|+.+++.++.|-.+|.|.+||...++.+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l  165 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKIL  165 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcce
Confidence            4566778888888887777642 21       779999999999999999999999999999887654

>KOG1354|consensus

Probab=97.39  E-value=0.0017  Score=37.09  Aligned_cols=68  Identities=12%  Similarity=0.372  Sum_probs=52.8

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------------------------CCCEEEEEEccCC--CEEEEe
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------------------------DSAVRSISFCSKQ--RTLISG   66 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------------------------~~~v~~~~~~~~~--~~~~~~   66 (84)
                      -+.|.++.|.-.|.+|++|..+|.+.+|.-.....                        +..|..+.|.+++  ..++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            35678999999999999999999999885432221                        5568888998754  467788


Q ss_pred             cCCCcEEEEeCCCC
Q psy16880         67 GDDGSICMWNLNSK   80 (84)
Q Consensus        67 ~~~~~i~~~~~~~~   80 (84)
                      ..|.+|++|.++.+
T Consensus       105 tNdktiKlWKi~er  118 (433)
T KOG1354|consen  105 TNDKTIKLWKIRER  118 (433)
T ss_pred             cCCcceeeeeeecc
Confidence            88999999987643

>KOG4640|consensus

Probab=97.39  E-value=0.0012  Score=40.07  Aligned_cols=44  Identities=18%  Similarity=0.206  Sum_probs=35.8

Q ss_pred             ceEEEeccCCCcCEE-EEEEccCCCEEEEeCCCCcEEEEeCCCCCC
Q psy16880          3 SIIHTFVHSNNSAVR-SISFCSKQHTLISGGDDGSICMWNLNSKLC   47 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~   47 (84)
                      +.+.+++.+ ..++. +++|.|+|..++.|-.||.+++.|+..+..
T Consensus        52 qRlwtip~p-~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   52 QRLWTIPIP-GENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             ceeEeccCC-CCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence            345667666 45555 999999999999999999999999987654

>KOG4547|consensus

Probab=97.35  E-value=0.004  Score=37.39  Aligned_cols=71  Identities=21%  Similarity=0.421  Sum_probs=51.7

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccC-----CCEEEEec-CCC
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSK-----QRTLISGG-DDG   70 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~-----~~~~~~~~-~~~   70 (84)
                      ..+..... +..+.+++.+|++..+++++  +.+.+||+.+...       .+.|++++|...     |..++++. .+.
T Consensus       136 ~~~~~~~~-~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r  212 (541)
T KOG4547|consen  136 IIRIWKEQ-KPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAER  212 (541)
T ss_pred             eeeeeccC-CCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecccccc
Confidence            34444444 56678899999999998887  6799999998877       778999999765     45555443 345


Q ss_pred             cEEEEeC
Q psy16880         71 SICMWNL   77 (84)
Q Consensus        71 ~i~~~~~   77 (84)
                      -|.+|-.
T Consensus       213 ~i~~w~v  219 (541)
T KOG4547|consen  213 GITVWVV  219 (541)
T ss_pred             ceeEEEE
Confidence            5777743

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.32  E-value=0.0092  Score=34.01  Aligned_cols=67  Identities=15%  Similarity=0.287  Sum_probs=47.9

Q ss_pred             CEEEEEEccCCCEEEEe-CCCCcEEEEeCCCC--CC---------CCCEEEEEEccCCCEEEEecC-CCcEEEEeC--CC
Q psy16880         15 AVRSISFCSKQHTLISG-GDDGSICMWNLNSK--LC---------DSAVRSISFCSKQRTLISGGD-DGSICMWNL--NS   79 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~~~-~~~~~~~~~d~~~~--~~---------~~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~--~~   79 (84)
                      ....+.++|++++|... .....|.+|+++..  ..         ....+.+.++|++++++++.. ++.|.+|+.  .+
T Consensus       246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t  325 (345)
T PF10282_consen  246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT  325 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence            46788999999977655 45668999999533  22         445899999999999887764 568888865  45


Q ss_pred             Ce
Q psy16880         80 KL   81 (84)
Q Consensus        80 ~~   81 (84)
                      +.
T Consensus       326 G~  327 (345)
T PF10282_consen  326 GK  327 (345)
T ss_dssp             TE
T ss_pred             Cc
Confidence            54

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2041|consensus

Probab=97.27  E-value=0.0039  Score=39.01  Aligned_cols=69  Identities=17%  Similarity=0.369  Sum_probs=55.7

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------------------CCCEEEEEEccCCCEEEEecCCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------------------DSAVRSISFCSKQRTLISGGDDG   70 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------------------~~~v~~~~~~~~~~~~~~~~~~~   70 (84)
                      .....+++|+....+++.|+.+|.+++.-+.+...                      ...|..+.|..+...+-+...+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            45678999999999999999999999876653322                      45688889988888888888999


Q ss_pred             cEEEEeCCCCe
Q psy16880         71 SICMWNLNSKL   81 (84)
Q Consensus        71 ~i~~~~~~~~~   81 (84)
                      .|.+|.+-.+.
T Consensus        94 lIiVWmlykgs  104 (1189)
T KOG2041|consen   94 LIIVWMLYKGS  104 (1189)
T ss_pred             eEEEEeeeccc
Confidence            99999765443

>KOG1354|consensus

Probab=97.18  E-value=0.0014  Score=37.38  Aligned_cols=75  Identities=20%  Similarity=0.356  Sum_probs=54.0

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------------CCCEEEEEEccCC-CEEEEec
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------------DSAVRSISFCSKQ-RTLISGG   67 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------------~~~v~~~~~~~~~-~~~~~~~   67 (84)
                      |.+.+..-|+--|.+++++.++..++++. |-.+.+|.+.....               ..-|++..|+|.. .+++-.+
T Consensus       155 prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS  233 (433)
T KOG1354|consen  155 PRRVYANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS  233 (433)
T ss_pred             eeeeccccceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec
Confidence            34444333366789999999999998865 55777887653322               3457888899854 5667778


Q ss_pred             CCCcEEEEeCCC
Q psy16880         68 DDGSICMWNLNS   79 (84)
Q Consensus        68 ~~~~i~~~~~~~   79 (84)
                      ..|+|++-|++.
T Consensus       234 SKGtIrLcDmR~  245 (433)
T KOG1354|consen  234 SKGTIRLCDMRQ  245 (433)
T ss_pred             CCCcEEEeechh
Confidence            899999999884

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.13  E-value=0.019  Score=33.96  Aligned_cols=66  Identities=21%  Similarity=0.224  Sum_probs=42.5

Q ss_pred             EEEEEEccCCCEEEE-eCCCCc--EEEEeCCCCCC------CCCEEEEEEccCCCEEEEecC-CC--cEEEEeCCCCe
Q psy16880         16 VRSISFCSKQHTLIS-GGDDGS--ICMWNLNSKLC------DSAVRSISFCSKQRTLISGGD-DG--SICMWNLNSKL   81 (84)
Q Consensus        16 v~~~~~~~~~~~l~~-~~~~~~--~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~-~~--~i~~~~~~~~~   81 (84)
                      ....+|+|+++.++. ...++.  +.++|+.++..      ........|+|+++.++..+. ++  .|.++++.+++
T Consensus       264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~  341 (448)
T PRK04792        264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK  341 (448)
T ss_pred             cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            346789999987754 455554  66667765543      234567889999987765543 33  45566766554

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.10  E-value=0.0022  Score=35.49  Aligned_cols=35  Identities=17%  Similarity=0.270  Sum_probs=31.6

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC   47 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~   47 (84)
                      .+.|..|+.+|++..|++...+|.+.+|++.....
T Consensus       229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  229 QDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             CCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence            67899999999999999999999999999975543

>KOG0280|consensus

Probab=97.05  E-value=0.0031  Score=35.29  Aligned_cols=51  Identities=20%  Similarity=0.104  Sum_probs=41.1

Q ss_pred             eccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccC
Q psy16880          8 FVHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSK   59 (84)
Q Consensus         8 ~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~   59 (84)
                      .+.| ...|.++.-+| .+..+++|+.|..+++||.+....       .+.|..+..+|.
T Consensus       206 ~kvH-~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~  264 (339)
T KOG0280|consen  206 SKVH-TSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPE  264 (339)
T ss_pred             ceee-ecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecch
Confidence            3456 77888888877 577999999999999999985433       678899998884

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=96.96  E-value=0.024  Score=32.35  Aligned_cols=65  Identities=6%  Similarity=0.211  Sum_probs=46.4

Q ss_pred             cCEEEEEEccCCCEEEEeC-CCCcEEEEeCCCCC--C----------CCCEEEEEEccCCCEEEEec-CCCcEEEEeCC
Q psy16880         14 SAVRSISFCSKQHTLISGG-DDGSICMWNLNSKL--C----------DSAVRSISFCSKQRTLISGG-DDGSICMWNLN   78 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~~~~-~~~~~~~~d~~~~~--~----------~~~v~~~~~~~~~~~~~~~~-~~~~i~~~~~~   78 (84)
                      ....++.++|++++++... ....+.+|++....  .          ....+++.|+|+++.+.+.. .++.|.++++.
T Consensus       144 ~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~  222 (345)
T PF10282_consen  144 PHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD  222 (345)
T ss_dssp             TCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             ccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence            4567899999999777653 33478888886554  1          56789999999998876654 46788888776

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=96.95  E-value=0.013  Score=35.18  Aligned_cols=69  Identities=19%  Similarity=0.367  Sum_probs=51.7

Q ss_pred             CcCEEEEEEccCCCEEE--EeCCCCcEEEEeCCCCCC----CCCEEEEEEccCCCEEEEecCC---CcEEEEeCCCCe
Q psy16880         13 NSAVRSISFCSKQHTLI--SGGDDGSICMWNLNSKLC----DSAVRSISFCSKQRTLISGGDD---GSICMWNLNSKL   81 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~--~~~~~~~~~~~d~~~~~~----~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~   81 (84)
                      .++|..++|.|.++.++  +|-....+.++|++..-.    ++.-..+-|+|.+++++..+.+   |.+-+|+..++.
T Consensus       274 ~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf  351 (561)
T COG5354         274 KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF  351 (561)
T ss_pred             cccceeeeecccCCceeEEecccccceeecccccceEEecCCcccccccccCcccEEEEecCCccccceEEeccCCce
Confidence            68899999999887654  445677888999876533    4555677889999999887654   568889876654

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.94  E-value=0.0055  Score=24.47  Aligned_cols=29  Identities=21%  Similarity=0.316  Sum_probs=15.2

Q ss_pred             CEEEEEEccCC---CEEEEeCCCCcEEEEeCC
Q psy16880         15 AVRSISFCSKQ---HTLISGGDDGSICMWNLN   43 (84)
Q Consensus        15 ~v~~~~~~~~~---~~l~~~~~~~~~~~~d~~   43 (84)
                      .+.+++|+|..   .+|+.+-..+.+.++|++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R   33 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR   33 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence            34555666532   355555555555566654

It contains a characteristic DLL sequence motif.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=96.89  E-value=0.0026  Score=36.06  Aligned_cols=67  Identities=16%  Similarity=0.319  Sum_probs=50.8

Q ss_pred             cCEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC-----------------------CCCEEEEEEccCCCEEEEecCC
Q psy16880         14 SAVRSISFCSK-QHTLISGGDDGSICMWNLNSKLC-----------------------DSAVRSISFCSKQRTLISGGDD   69 (84)
Q Consensus        14 ~~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~-----------------------~~~v~~~~~~~~~~~~~~~~~~   69 (84)
                      ..|.+-.|+|. ...+.-.+..|.+.+-|+++...                       -..|+.+.|+++++++++-+. 
T Consensus       222 eVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-  300 (460)
T COG5170         222 EVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-  300 (460)
T ss_pred             HHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-
Confidence            45677788884 46677778889999999984433                       457899999999998877643 


Q ss_pred             CcEEEEeCCCCe
Q psy16880         70 GSICMWNLNSKL   81 (84)
Q Consensus        70 ~~i~~~~~~~~~   81 (84)
                      .++++||.+..+
T Consensus       301 ltvkiwDvnm~k  312 (460)
T COG5170         301 LTVKIWDVNMAK  312 (460)
T ss_pred             ceEEEEeccccc
Confidence            579999987543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=96.88  E-value=0.0051  Score=37.06  Aligned_cols=33  Identities=24%  Similarity=0.375  Sum_probs=30.4

Q ss_pred             CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCC
Q psy16880         48 DSAVRSISFCSKQRTLISGGDDGSICMWNLNSK   80 (84)
Q Consensus        48 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   80 (84)
                      +..+.+.+++|+...++.|+.||.|.+||...+
T Consensus       259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~  291 (545)
T PF11768_consen  259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRG  291 (545)
T ss_pred             CCcceEEecCcccceEEEEecCCeEEEEEcCCC
Confidence            788999999999999999999999999998654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=96.87  E-value=0.036  Score=36.37  Aligned_cols=66  Identities=12%  Similarity=0.098  Sum_probs=49.7

Q ss_pred             EEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC----------------------------CCCEEEEEEccCCCEEEEec
Q psy16880         17 RSISFCSKQH-TLISGGDDGSICMWNLNSKLC----------------------------DSAVRSISFCSKQRTLISGG   67 (84)
Q Consensus        17 ~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~----------------------------~~~v~~~~~~~~~~~~~~~~   67 (84)
                      ..|+++|++. ++++-..++.+++||+.+...                            -....++++.+++..+++-.
T Consensus       743 ~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs  822 (1057)
T PLN02919        743 SGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADS  822 (1057)
T ss_pred             cEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEEC
Confidence            4688999887 566667788999999864321                            01346888899998878888


Q ss_pred             CCCcEEEEeCCCCee
Q psy16880         68 DDGSICMWNLNSKLC   82 (84)
Q Consensus        68 ~~~~i~~~~~~~~~~   82 (84)
                      .++.|++||..++..
T Consensus       823 ~N~rIrviD~~tg~v  837 (1057)
T PLN02919        823 YNHKIKKLDPATKRV  837 (1057)
T ss_pred             CCCEEEEEECCCCeE
Confidence            889999999877653

>KOG2314|consensus

Probab=96.78  E-value=0.019  Score=35.02  Aligned_cols=67  Identities=18%  Similarity=0.381  Sum_probs=48.2

Q ss_pred             EEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----CCCEEEEEEccCCCEEEEec-----------CCCcEEEEeCCC
Q psy16880         16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----DSAVRSISFCSKQRTLISGG-----------DDGSICMWNLNS   79 (84)
Q Consensus        16 v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----~~~v~~~~~~~~~~~~~~~~-----------~~~~i~~~~~~~   79 (84)
                      -.-+.|+|.|.+|++-...| +.+|--.....     -..|.-+.|+|+.+++++=+           ....+.+||+++
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t  291 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT  291 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence            35789999999999877665 56675433222     44678899999999888643           225699999998


Q ss_pred             Ceec
Q psy16880         80 KLCD   83 (84)
Q Consensus        80 ~~~~   83 (84)
                      +...
T Consensus       292 G~lk  295 (698)
T KOG2314|consen  292 GLLK  295 (698)
T ss_pred             cchh
Confidence            8643

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.76  E-value=0.035  Score=32.55  Aligned_cols=71  Identities=18%  Similarity=0.303  Sum_probs=48.3

Q ss_pred             EEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------------CCCEEEEEEcc-----CC---C
Q psy16880          5 IHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------------DSAVRSISFCS-----KQ---R   61 (84)
Q Consensus         5 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------------~~~v~~~~~~~-----~~---~   61 (84)
                      ...++.. .++|.+++.+ +-.+++.|..+|.+.+.|++.+..               ...+.++.|..     ++   .
T Consensus        79 ~~l~~~~-~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi  156 (395)
T PF08596_consen   79 LTLLDAK-QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI  156 (395)
T ss_dssp             EEEE----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred             hhheecc-CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence            3444555 7899999986 677999999999999999987755               33577777762     22   3


Q ss_pred             EEEEecCCCcEEEEeC
Q psy16880         62 TLISGGDDGSICMWNL   77 (84)
Q Consensus        62 ~~~~~~~~~~i~~~~~   77 (84)
                      .+++|...|.+.+|.+
T Consensus       157 ~L~vGTn~G~v~~fkI  172 (395)
T PF08596_consen  157 CLLVGTNSGNVLTFKI  172 (395)
T ss_dssp             EEEEEETTSEEEEEEE
T ss_pred             EEEEEeCCCCEEEEEE
Confidence            5667777888888854

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2066|consensus

Probab=96.76  E-value=0.064  Score=34.05  Aligned_cols=18  Identities=28%  Similarity=0.403  Sum_probs=10.1

Q ss_pred             CCEEEEeCCCCcEEEEeC
Q psy16880         25 QHTLISGGDDGSICMWNL   42 (84)
Q Consensus        25 ~~~l~~~~~~~~~~~~d~   42 (84)
                      |..+++++.||.+.+..+
T Consensus        83 Gey~asCS~DGkv~I~sl  100 (846)
T KOG2066|consen   83 GEYVASCSDDGKVVIGSL  100 (846)
T ss_pred             CceEEEecCCCcEEEeec
Confidence            556666666665555444

>KOG1275|consensus

Probab=96.76  E-value=0.017  Score=37.13  Aligned_cols=64  Identities=17%  Similarity=0.293  Sum_probs=47.1

Q ss_pred             EEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecC---------CCcEEEEeCCC
Q psy16880         16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGD---------DGSICMWNLNS   79 (84)
Q Consensus        16 v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~   79 (84)
                      |.-|+.  +++.+.+|...|.|.+-|.+....       .+.++.+..  +|+.+++++.         |..+++||++.
T Consensus       180 v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRm  255 (1118)
T KOG1275|consen  180 VTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRM  255 (1118)
T ss_pred             eEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhh
Confidence            555544  688999999999999999987665       555655554  5777887764         55688999987


Q ss_pred             Ceec
Q psy16880         80 KLCD   83 (84)
Q Consensus        80 ~~~~   83 (84)
                      .+.+
T Consensus       256 mral  259 (1118)
T KOG1275|consen  256 MRAL  259 (1118)
T ss_pred             hhcc
Confidence            6643

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=96.75  E-value=0.05  Score=32.81  Aligned_cols=70  Identities=9%  Similarity=0.200  Sum_probs=56.2

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCC-cEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDG-SICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~-~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                      .+.|.-..+..++.-++.|..++ .+-++|..+...      -+.|.++..+|+|+.++.+-....+.+.|+.+++.
T Consensus       359 ~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv  435 (668)
T COG4946         359 KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV  435 (668)
T ss_pred             CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence            55676666777777888898898 888999987765      45799999999999888887777788888887653

>KOG1912|consensus

Probab=96.75  E-value=0.026  Score=35.85  Aligned_cols=79  Identities=15%  Similarity=0.296  Sum_probs=55.8

Q ss_pred             ceEEEeccCCCcCEEEEEEccCC------------CEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEcc---CC
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQ------------HTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCS---KQ   60 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~---~~   60 (84)
                      +.++.++.| ...|..++|.|..            -.++++.-.|.+.+||......       ...+-.++|-+   +.
T Consensus        46 q~iqsie~h-~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~S  124 (1062)
T KOG1912|consen   46 QLIQSIELH-QSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDS  124 (1062)
T ss_pred             hhhhccccC-ccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcc
Confidence            456677778 8999999998732            1456777889999999876544       34455566543   44


Q ss_pred             -CEEEEecCCCcEEEEeCCCCee
Q psy16880         61 -RTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        61 -~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                       ..++.......+-+|+..+++.
T Consensus       125 rd~LlaIh~ss~lvLwntdtG~k  147 (1062)
T KOG1912|consen  125 RDVLLAIHGSSTLVLWNTDTGEK  147 (1062)
T ss_pred             hheeEEecCCcEEEEEEccCCce
Confidence             4556666678899998877754

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=96.74  E-value=0.015  Score=33.17  Aligned_cols=68  Identities=13%  Similarity=0.402  Sum_probs=51.8

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------------------------CCCEEEEEEccC--CCEEEEe
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------------------------DSAVRSISFCSK--QRTLISG   66 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------------------------~~~v~~~~~~~~--~~~~~~~   66 (84)
                      ...|.++.|...|.++++|...|.+.+|.-.....                        +..|..+.|..+  ...++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            45688999999999999999999999886544331                        446777887643  2466777


Q ss_pred             cCCCcEEEEeCCCC
Q psy16880         67 GDDGSICMWNLNSK   80 (84)
Q Consensus        67 ~~~~~i~~~~~~~~   80 (84)
                      +.|.+|++|.+..+
T Consensus       106 tNdktiKlWKiyek  119 (460)
T COG5170         106 TNDKTIKLWKIYEK  119 (460)
T ss_pred             cCCceeeeeeeecc
Confidence            78999999987654

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.60  E-value=0.012  Score=23.55  Aligned_cols=30  Identities=23%  Similarity=0.315  Sum_probs=24.3

Q ss_pred             CEEEEEEccCCC---EEEEecCCCcEEEEeCCC
Q psy16880         50 AVRSISFCSKQR---TLISGGDDGSICMWNLNS   79 (84)
Q Consensus        50 ~v~~~~~~~~~~---~~~~~~~~~~i~~~~~~~   79 (84)
                      .++++.|+|...   +++..-..+.+.++|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            578999997544   777777789999999984

It contains a characteristic DLL sequence motif.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=96.57  E-value=0.042  Score=35.60  Aligned_cols=66  Identities=12%  Similarity=0.198  Sum_probs=47.9

Q ss_pred             cCEEEEEEccCCCEEEEeCC---CCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCC
Q psy16880         14 SAVRSISFCSKQHTLISGGD---DGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSK   80 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~~~~~---~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   80 (84)
                      +--.+++|-|.|+++++...   ...|.+|.-+....          ...|..++|++++..++....+. |.+|-..+.
T Consensus       257 gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY  335 (928)
T PF04762_consen  257 GLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY  335 (928)
T ss_pred             CccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence            44468899999999987754   34666676554433          45789999999999888876444 999976554

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.43  E-value=0.11  Score=32.89  Aligned_cols=68  Identities=12%  Similarity=0.135  Sum_probs=48.7

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCC---------CC------------------CCCEEEEEEccCC---CE
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSK---------LC------------------DSAVRSISFCSKQ---RT   62 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~---------~~------------------~~~v~~~~~~~~~---~~   62 (84)
                      ...|..+..+|+|.+++..+..+...+.-.+..         ..                  ...|..+.|+|.+   ..
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            346888999999999988887775544322210         01                  3468899999864   67


Q ss_pred             EEEecCCCcEEEEeCCCC
Q psy16880         63 LISGGDDGSICMWNLNSK   80 (84)
Q Consensus        63 ~~~~~~~~~i~~~~~~~~   80 (84)
                      ++.-..|+.+++||+...
T Consensus       164 l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEEecCCEEEEEecCCC
Confidence            777778999999998643

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1920|consensus

Probab=96.39  E-value=0.089  Score=34.89  Aligned_cols=62  Identities=11%  Similarity=0.172  Sum_probs=50.6

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICM   74 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~   74 (84)
                      .+.|.++.|..+...++.+...|.+.+-|..+...      ...|.+++|+|++..++.++...++.+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~  135 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLF  135 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEE
Confidence            35788999999888888888889888877765544      788999999999999988877666554

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=96.33  E-value=0.053  Score=32.90  Aligned_cols=34  Identities=21%  Similarity=0.428  Sum_probs=25.7

Q ss_pred             CEEEEEEcc----CCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         50 AVRSISFCS----KQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        50 ~v~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      .....+.+.    +...+++.+.|+++++||+.+++++
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~  253 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCL  253 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence            345555655    6678889999999999999998874

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG3914|consensus

Probab=96.30  E-value=0.085  Score=30.79  Aligned_cols=32  Identities=13%  Similarity=0.183  Sum_probs=27.9

Q ss_pred             CCCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880         48 DSAVRSISFCSKQRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus        48 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~   79 (84)
                      -+.+..++++|+.+.++++..|..|++-....
T Consensus       151 vSml~dVavS~D~~~IitaDRDEkIRvs~ypa  182 (390)
T KOG3914|consen  151 VSMLLDVAVSPDDQFIITADRDEKIRVSRYPA  182 (390)
T ss_pred             hhhhheeeecCCCCEEEEecCCceEEEEecCc
Confidence            46789999999999999999999999876653

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.14  E-value=0.083  Score=33.76  Aligned_cols=61  Identities=8%  Similarity=0.203  Sum_probs=43.4

Q ss_pred             cCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880         14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      ....|++-. ....++.|+.+|.|++||-.....       ..+|.++..+.+|++++.-|.. .+.+.+
T Consensus       578 ~~Fs~~aTt-~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~  645 (794)
T PF08553_consen  578 NNFSCFATT-EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLID  645 (794)
T ss_pred             CCceEEEec-CCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEE
Confidence            344555544 345788899999999999543222       6799999999999998877644 355554

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK04043 tolB translocation protein TolB; Provisional

Probab=96.07  E-value=0.14  Score=30.37  Aligned_cols=67  Identities=12%  Similarity=0.118  Sum_probs=43.7

Q ss_pred             CEEEEEEccCCCE-EEEe-CC--CCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEe-cCC--CcEEEEeCCCCe
Q psy16880         15 AVRSISFCSKQHT-LISG-GD--DGSICMWNLNSKLC------DSAVRSISFCSKQRTLISG-GDD--GSICMWNLNSKL   81 (84)
Q Consensus        15 ~v~~~~~~~~~~~-l~~~-~~--~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~-~~~--~~i~~~~~~~~~   81 (84)
                      ......|+|+++. ++.. ..  ...+.++|+.++..      ++......|+|+++.++.. +.+  ..|.++++.+++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            5668899999974 4432 22  34677788866544      4446677899999866543 333  457777776654

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=95.78  E-value=0.28  Score=31.58  Aligned_cols=74  Identities=12%  Similarity=0.213  Sum_probs=48.5

Q ss_pred             CCceEEEeccCCCcCEEEEEEccC-------CCEEEEeCCCCcEEEEeCCCCCC------------CCCEEEEEEccCCC
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSK-------QHTLISGGDDGSICMWNLNSKLC------------DSAVRSISFCSKQR   61 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~-------~~~l~~~~~~~~~~~~d~~~~~~------------~~~v~~~~~~~~~~   61 (84)
                      +|+.+.....+...+|..+  .|+       ...-..|-.+..+..||.+....            ....+|++-+.+| 
T Consensus       513 ~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-  589 (794)
T PF08553_consen  513 RGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-  589 (794)
T ss_pred             CCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-
Confidence            3667776666522335544  332       22334566677788889875431            4567777777776 


Q ss_pred             EEEEecCCCcEEEEeC
Q psy16880         62 TLISGGDDGSICMWNL   77 (84)
Q Consensus        62 ~~~~~~~~~~i~~~~~   77 (84)
                      .++.|+.+|.|++||-
T Consensus       590 ~iavgs~~G~IRLyd~  605 (794)
T PF08553_consen  590 YIAVGSNKGDIRLYDR  605 (794)
T ss_pred             eEEEEeCCCcEEeecc
Confidence            5899999999999984

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=95.69  E-value=0.093  Score=25.42  Aligned_cols=60  Identities=15%  Similarity=0.275  Sum_probs=38.9

Q ss_pred             EEEEEEcc---CC-CEEEEeCCCCcEEEEeCCCCCC----CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880         16 VRSISFCS---KQ-HTLISGGDDGSICMWNLNSKLC----DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus        16 v~~~~~~~---~~-~~l~~~~~~~~~~~~d~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      |.+|++..   +| ..|+.|+.|..+++|+-...-.    ...|..++-...+ .++.+..+|+|-+|+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~~-~F~Y~l~NGTVGvY~   69 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGGG-RFAYALANGTVGVYD   69 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCCC-EEEEEecCCEEEEEe
Confidence            44555544   33 5789999999999997653222    5567777766553 466666666665554

>KOG2314|consensus

Probab=95.68  E-value=0.14  Score=31.53  Aligned_cols=64  Identities=8%  Similarity=0.237  Sum_probs=45.8

Q ss_pred             EEEEEEccCCCEEEEe---CCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecC------CCcEEEEeCCC
Q psy16880         16 VRSISFCSKQHTLISG---GDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGD------DGSICMWNLNS   79 (84)
Q Consensus        16 v~~~~~~~~~~~l~~~---~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~------~~~i~~~~~~~   79 (84)
                      ...+-|+|.|++++.+   +..+.+.++|..-...       -...+.+.|.|.|+++.+++.      |.-.++|+.+.
T Consensus       495 ~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG  574 (698)
T KOG2314|consen  495 ANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG  574 (698)
T ss_pred             cceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence            4678899999988766   5578899999874222       234567889999999998764      33456666543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=95.61  E-value=0.2  Score=28.60  Aligned_cols=82  Identities=11%  Similarity=0.226  Sum_probs=53.1

Q ss_pred             CCceEEEecc----CCCcCEEEEEEccCCCEEEEeCCCC-------cEEEEeCCCCCC------------CCCEEEEEEc
Q psy16880          1 DGSIIHTFVH----SNNSAVRSISFCSKQHTLISGGDDG-------SICMWNLNSKLC------------DSAVRSISFC   57 (84)
Q Consensus         1 ~g~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~~-------~~~~~d~~~~~~------------~~~v~~~~~~   57 (84)
                      +|+++.+.+-    | ...|.-+++.+++..++..-..+       .+-+++......            .+.+-+|+++
T Consensus       147 sG~ll~q~~Lp~~~~-~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~  225 (305)
T PF07433_consen  147 SGALLEQVELPPDLH-QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAAD  225 (305)
T ss_pred             CCceeeeeecCcccc-ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEe
Confidence            3555555322    3 55678888888887666553222       223333322111            6889999999


Q ss_pred             cCCCEE-EEecCCCcEEEEeCCCCeec
Q psy16880         58 SKQRTL-ISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        58 ~~~~~~-~~~~~~~~i~~~~~~~~~~~   83 (84)
                      +++..+ +++...+.+.+||..++..+
T Consensus       226 ~~g~~ia~tsPrGg~~~~~d~~tg~~~  252 (305)
T PF07433_consen  226 RDGRLIAVTSPRGGRVAVWDAATGRLL  252 (305)
T ss_pred             CCCCEEEEECCCCCEEEEEECCCCCEe
Confidence            988766 56777889999999887754

>KOG3617|consensus

Probab=95.55  E-value=0.38  Score=31.55  Aligned_cols=34  Identities=12%  Similarity=0.436  Sum_probs=30.7

Q ss_pred             ccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCC
Q psy16880          9 VHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLN   43 (84)
Q Consensus         9 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~   43 (84)
                      ..| +.+|..+.|+++|..+.++..-|.+.+|.+.
T Consensus        98 ~th-~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   98 ETH-PAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             cCC-CCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            345 8899999999999999999999999999776

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.54  E-value=0.25  Score=29.41  Aligned_cols=70  Identities=11%  Similarity=0.138  Sum_probs=47.8

Q ss_pred             cCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccC----------------CC--EEEEec
Q psy16880         14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSK----------------QR--TLISGG   67 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~----------------~~--~~~~~~   67 (84)
                      -.+.++..+|.+.+.+....-|.|.++|+.....        ..++.-+.....                ..  .++-..
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap  387 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP  387 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence            4478899999999999989999999999987765        112222221111                01  223456


Q ss_pred             CCCcEEEEeCCCCeec
Q psy16880         68 DDGSICMWNLNSKLCD   83 (84)
Q Consensus        68 ~~~~i~~~~~~~~~~~   83 (84)
                      ..|.+-+|.++.+..+
T Consensus       388 rRg~lEvW~~~~g~Rv  403 (415)
T PF14655_consen  388 RRGILEVWSMRQGPRV  403 (415)
T ss_pred             cCCeEEEEecCCCCEE
Confidence            7889999999887654

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.43  E-value=0.27  Score=30.59  Aligned_cols=31  Identities=10%  Similarity=0.331  Sum_probs=21.5

Q ss_pred             CCCEEEEEEccCCCEEEEe-cCCCcEEEEeCC
Q psy16880         48 DSAVRSISFCSKQRTLISG-GDDGSICMWNLN   78 (84)
Q Consensus        48 ~~~v~~~~~~~~~~~~~~~-~~~~~i~~~~~~   78 (84)
                      .+.|+|.+|.++|..++.+ +..=.-++||-.
T Consensus       155 ~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  155 SGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             CceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            6789999999998766544 333346677653

>KOG1832|consensus

Probab=95.42  E-value=0.049  Score=35.42  Aligned_cols=72  Identities=19%  Similarity=0.353  Sum_probs=51.9

Q ss_pred             EEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecC-CC-cEEEEe
Q psy16880          6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGD-DG-SICMWN   76 (84)
Q Consensus         6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~-~~-~i~~~~   76 (84)
                      +.++.+ +....|++|+.+.++|+.|...|.+++|++.++..       ++.++.+.=+.++.+.++.+. .. ...+|+
T Consensus      1095 ~~frd~-~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1095 RSFRDE-TALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred             hhhhcc-ccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence            445566 67788999999999999999999999999987765       455666665556666655443 22 345676


Q ss_pred             CC
Q psy16880         77 LN   78 (84)
Q Consensus        77 ~~   78 (84)
                      ..
T Consensus      1174 ~~ 1175 (1516)
T KOG1832|consen 1174 AS 1175 (1516)
T ss_pred             cc
Confidence            53

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=95.42  E-value=0.084  Score=31.94  Aligned_cols=70  Identities=19%  Similarity=0.292  Sum_probs=50.1

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----CCCEEEEEEccCCCEEEEecC---------------CCcE
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----DSAVRSISFCSKQRTLISGGD---------------DGSI   72 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----~~~v~~~~~~~~~~~~~~~~~---------------~~~i   72 (84)
                      ..++...+++|.|..|++.... .|.+|+......     ...|..+.|+|.++++.+=+.               ++.+
T Consensus        32 ~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~  110 (561)
T COG5354          32 NWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNV  110 (561)
T ss_pred             CcchhheeecCcchheehhhcc-ceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCce
Confidence            4567788999999988876544 466777644333     567888999999988876432               3358


Q ss_pred             EEEeCCCCeec
Q psy16880         73 CMWNLNSKLCD   83 (84)
Q Consensus        73 ~~~~~~~~~~~   83 (84)
                      .+||..++..+
T Consensus       111 ~vwd~~sg~iv  121 (561)
T COG5354         111 FVWDIASGMIV  121 (561)
T ss_pred             eEEeccCceeE
Confidence            89998877654

>PRK02888 nitrous-oxide reductase; Validated

Probab=95.18  E-value=0.43  Score=29.96  Aligned_cols=65  Identities=11%  Similarity=0.132  Sum_probs=49.2

Q ss_pred             CEEEEEEccCCCEEE-EeCCCCcEEEEeCCCCCC------------------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880         15 AVRSISFCSKQHTLI-SGGDDGSICMWNLNSKLC------------------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~-~~~~~~~~~~~d~~~~~~------------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      ....+.++|+|++++ ++..+..+.+.|......                  .....+.+|.+++....+--.|..+-.|
T Consensus       322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kw  401 (635)
T PRK02888        322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKW  401 (635)
T ss_pred             CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEE
Confidence            346889999998765 556688999999976431                  4456788899888766666678899999


Q ss_pred             eCCC
Q psy16880         76 NLNS   79 (84)
Q Consensus        76 ~~~~   79 (84)
                      ++..
T Consensus       402 n~~~  405 (635)
T PRK02888        402 NIEA  405 (635)
T ss_pred             ehHH
Confidence            9764

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.09  E-value=0.47  Score=29.86  Aligned_cols=61  Identities=13%  Similarity=0.317  Sum_probs=43.7

Q ss_pred             EEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEc--cCCCEEEEecCCCcEEEEe
Q psy16880         16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFC--SKQRTLISGGDDGSICMWN   76 (84)
Q Consensus        16 v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~--~~~~~~~~~~~~~~i~~~~   76 (84)
                      ..-+.-+.-++..+.-+....+.+||.+....        ...|.++.|.  |++..+++++..+.|.++.
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~  102 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT  102 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence            33444444444444445566889999986655        5678999986  6888999999999999884

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG4649|consensus

Probab=95.05  E-value=0.31  Score=27.55  Aligned_cols=60  Identities=12%  Similarity=0.142  Sum_probs=44.2

Q ss_pred             CCCEEEEeCCCCcEEEEeCCCCCC------CCCEE-EEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         24 KQHTLISGGDDGSICMWNLNSKLC------DSAVR-SISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        24 ~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      -+.+++.|...+.+.+.+.+++..      ...|- .-...+++..+.++++|+..+..|+++..++
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cV  128 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCV  128 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceE
Confidence            466788889999998888888755      11221 1223567788999999999999999887764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=95.02  E-value=0.39  Score=28.56  Aligned_cols=69  Identities=17%  Similarity=0.200  Sum_probs=41.9

Q ss_pred             CcCEEEEEEccCCCEEE-EeCCC--CcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecC-CC--cEEEEeCCCC
Q psy16880         13 NSAVRSISFCSKQHTLI-SGGDD--GSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGD-DG--SICMWNLNSK   80 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~-~~~~~--~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~-~~--~i~~~~~~~~   80 (84)
                      .+.....+|+|+++.++ +...+  ..+.++|+..+..      ........|+|+++.++..+. .+  .|.+.++.++
T Consensus       232 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g  311 (419)
T PRK04043        232 QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG  311 (419)
T ss_pred             CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            44455678999997654 33333  4566667655543      222345679999987765543 33  4666677655


Q ss_pred             e
Q psy16880         81 L   81 (84)
Q Consensus        81 ~   81 (84)
                      +
T Consensus       312 ~  312 (419)
T PRK04043        312 S  312 (419)
T ss_pred             C
Confidence            4

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.02  E-value=0.11  Score=29.81  Aligned_cols=48  Identities=6%  Similarity=0.198  Sum_probs=35.1

Q ss_pred             CCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880         34 DGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        34 ~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                      .+.+.++|+.+...      ...+....|+|+++.++.+. ++.|.+++..++..
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~   75 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE   75 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred             ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence            34677888887654      35688899999999888885 67788888766543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=94.82  E-value=0.31  Score=26.43  Aligned_cols=65  Identities=15%  Similarity=0.230  Sum_probs=47.6

Q ss_pred             cCEEEEEEccCCCEEE-EeCCCCcEEEEeCCCCCC--------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCC
Q psy16880         14 SAVRSISFCSKQHTLI-SGGDDGSICMWNLNSKLC--------------DSAVRSISFCSKQRTLISGGDDGSICMWNLN   78 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~-~~~~~~~~~~~d~~~~~~--------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~   78 (84)
                      .....|+|+|+++.|. +-+..+.+..+++.....              .+....+++..++++.++.-..+.|.+++..
T Consensus       134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred             ccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence            4457899999998664 667777888888853221              2247889999999877776677889999887

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0882|consensus

Probab=94.66  E-value=0.29  Score=29.51  Aligned_cols=35  Identities=9%  Similarity=0.096  Sum_probs=30.4

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC   47 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~   47 (84)
                      +....++.++|++..+.+-+.|..+++++..++..
T Consensus       201 Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl  235 (558)
T KOG0882|consen  201 KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL  235 (558)
T ss_pred             ccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence            45667899999999999999999999999887755

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.52  E-value=0.15  Score=27.55  Aligned_cols=21  Identities=24%  Similarity=0.514  Sum_probs=13.3

Q ss_pred             CCCEEEEeCCCCcEEEEeCCC
Q psy16880         24 KQHTLISGGDDGSICMWNLNS   44 (84)
Q Consensus        24 ~~~~l~~~~~~~~~~~~d~~~   44 (84)
                      .+.++++-..+|.+.+||+..
T Consensus        21 ~~~~Ll~iT~~G~l~vWnl~~   41 (219)
T PF07569_consen   21 NGSYLLAITSSGLLYVWNLKK   41 (219)
T ss_pred             CCCEEEEEeCCCeEEEEECCC
Confidence            455666666666666666653

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1645|consensus

Probab=94.47  E-value=0.23  Score=29.46  Aligned_cols=34  Identities=12%  Similarity=0.305  Sum_probs=28.6

Q ss_pred             cCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC
Q psy16880         14 SAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC   47 (84)
Q Consensus        14 ~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~   47 (84)
                      ..+++++|+.+. ..+.+|..+|.|.+||++....
T Consensus       236 ~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~  270 (463)
T KOG1645|consen  236 NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG  270 (463)
T ss_pred             CCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence            678899999865 5778899999999999987655

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=94.40  E-value=0.33  Score=25.89  Aligned_cols=58  Identities=10%  Similarity=0.198  Sum_probs=36.7

Q ss_pred             CCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880         24 KQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        24 ~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                      ++..++.+..++.+..||..++..      +..+...... .+..++.+..++.+..+|..+++.
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~v~v~~~~~~l~~~d~~tG~~   98 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV-DGGRVYVGTSDGSLYALDAKTGKV   98 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE-ETTEEEEEETTSEEEEEETTTSCE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee-cccccccccceeeeEecccCCcce
Confidence            456666678889999999977665      1211111111 234556666777888888887765

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=94.26  E-value=0.57  Score=27.08  Aligned_cols=58  Identities=12%  Similarity=0.157  Sum_probs=36.5

Q ss_pred             CCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880         24 KQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        24 ~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                      ++..++.++.++.+..+|..++..      ...+...... .+..++.++.++.+..+|.++++.
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~  167 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGER  167 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCce
Confidence            456677778888888889876655      2222111111 234566667788899998887654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0309|consensus

Probab=94.24  E-value=0.064  Score=34.11  Aligned_cols=66  Identities=23%  Similarity=0.518  Sum_probs=44.1

Q ss_pred             cCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----CC---CEEEEEEcc-CCCEEEEecCCCcEEEEeCCC
Q psy16880         14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----DS---AVRSISFCS-KQRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----~~---~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~~   79 (84)
                      .....++|+.....+++.+....+.+||.+.+..     ..   .+..+.|.. ....+.+++.|++++.|+...
T Consensus       159 s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  159 SAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK  233 (1081)
T ss_pred             ccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence            4456788887555555566677899999987654     22   344444433 223567788899999998753

>KOG2114|consensus

Probab=93.88  E-value=1.1  Score=29.20  Aligned_cols=67  Identities=10%  Similarity=0.232  Sum_probs=49.7

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----------DSAVRSISFCSKQRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~   79 (84)
                      ..++.+++.+.+-..++.|-.+|.|..+.-+...-           +.+|+++.+..++..++-+.....+.+|.+.+
T Consensus       125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g  202 (933)
T KOG2114|consen  125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG  202 (933)
T ss_pred             CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecC
Confidence            56788999999999999999999998864332111           67899999987776644444566788887764

>KOG3621|consensus

Probab=93.87  E-value=0.46  Score=30.06  Aligned_cols=67  Identities=18%  Similarity=0.275  Sum_probs=51.2

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~   79 (84)
                      ...|.--++.....+++.|+..|.+.+|.-..+..        .+.+...+.++...+++.++..+.|.++.+..
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~  107 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK  107 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence            44555556677889999999999999998765544        33466677788888888888889998886654

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=93.81  E-value=0.8  Score=27.18  Aligned_cols=35  Identities=14%  Similarity=0.182  Sum_probs=26.7

Q ss_pred             CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         48 DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        48 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      .+.|++++.+ +--.++.+..+|.+.+.|++....+
T Consensus        86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI  120 (395)
T PF08596_consen   86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVI  120 (395)
T ss_dssp             S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEE
T ss_pred             CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEE
Confidence            5788999886 4457888888999999999877654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2444|consensus

Probab=93.77  E-value=0.61  Score=25.66  Aligned_cols=19  Identities=32%  Similarity=0.669  Sum_probs=11.6

Q ss_pred             CCEEEEeCCCCcEEEEeCC
Q psy16880         25 QHTLISGGDDGSICMWNLN   43 (84)
Q Consensus        25 ~~~l~~~~~~~~~~~~d~~   43 (84)
                      +..++.|..++.+.+|..+
T Consensus        70 ~~~~~vG~~dg~v~~~n~n   88 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWN   88 (238)
T ss_pred             CceEEeecccceEEEecCC
Confidence            4456666666666666554

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.35  E-value=0.7  Score=25.08  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=10.5

Q ss_pred             CCEEEEecCCCcEEEEeCCCCe
Q psy16880         60 QRTLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        60 ~~~~~~~~~~~~i~~~~~~~~~   81 (84)
                      +.++++...+|.+++||+.+++
T Consensus        22 ~~~Ll~iT~~G~l~vWnl~~~k   43 (219)
T PF07569_consen   22 GSYLLAITSSGLLYVWNLKKGK   43 (219)
T ss_pred             CCEEEEEeCCCeEEEEECCCCe
Confidence            3344444445555555554444

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK02888 nitrous-oxide reductase; Validated

Probab=93.32  E-value=1.3  Score=28.04  Aligned_cols=48  Identities=4%  Similarity=0.053  Sum_probs=36.9

Q ss_pred             CCcEEEEeCCC-----CCC------CCCEEEEEEccCCCEEEEec-CCCcEEEEeCCCCe
Q psy16880         34 DGSICMWNLNS-----KLC------DSAVRSISFCSKQRTLISGG-DDGSICMWNLNSKL   81 (84)
Q Consensus        34 ~~~~~~~d~~~-----~~~------~~~v~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~   81 (84)
                      +..|.+.|..+     ...      .....++.++|+++++++.+ .+..+.+.|+.+.+
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence            35688888877     222      67889999999999887655 47899999987654

>KOG4460|consensus

Probab=93.29  E-value=1.2  Score=27.74  Aligned_cols=66  Identities=12%  Similarity=0.129  Sum_probs=44.5

Q ss_pred             CEEEEEEccCCCEEEEeCCCCcEEEEeCC---------CCCC------------------CCCEEEEEEccCC---CEEE
Q psy16880         15 AVRSISFCSKQHTLISGGDDGSICMWNLN---------SKLC------------------DSAVRSISFCSKQ---RTLI   64 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~~~~~~~~~~~~d~~---------~~~~------------------~~~v~~~~~~~~~---~~~~   64 (84)
                      .|..+..++.|+.++-.+.+|.+.++-.+         .++.                  .-.+...+|+|+.   ..+.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            35677788899988888888877765421         1111                  1135667899876   4455


Q ss_pred             EecCCCcEEEEeCCCC
Q psy16880         65 SGGDDGSICMWNLNSK   80 (84)
Q Consensus        65 ~~~~~~~i~~~~~~~~   80 (84)
                      .-+.|+.|++|++...
T Consensus       185 iL~sdnviRiy~lS~~  200 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEP  200 (741)
T ss_pred             EEecCcEEEEEecCCc
Confidence            5567999999998654

>KOG2395|consensus

Probab=92.77  E-value=0.8  Score=28.40  Aligned_cols=51  Identities=8%  Similarity=0.243  Sum_probs=37.3

Q ss_pred             CCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880         25 QHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus        25 ~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      ...++.|+.+|.+++||-.....       ...|.++..+.+|++++.-+. ..+.+-+
T Consensus       441 sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~  498 (644)
T KOG2395|consen  441 SGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLID  498 (644)
T ss_pred             CceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEEE
Confidence            45788899999999999732222       778999999999998876654 3344433

>KOG1920|consensus

Probab=92.44  E-value=2  Score=29.26  Aligned_cols=65  Identities=14%  Similarity=0.245  Sum_probs=46.1

Q ss_pred             EEEEEEccCCCEEEEe---CCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEE---ecCCCcEEEEeCCC
Q psy16880         16 VRSISFCSKQHTLISG---GDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLIS---GGDDGSICMWNLNS   79 (84)
Q Consensus        16 v~~~~~~~~~~~l~~~---~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~---~~~~~~i~~~~~~~   79 (84)
                      =.+++|-|.|..+++.   ..+..|.+|.-+....          +..+..++|..++..++.   ......+.+|-..+
T Consensus       244 ~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  244 QHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             ccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence            3588999999888766   3344677887654433          345899999999988876   33344599997655


Q ss_pred             C
Q psy16880         80 K   80 (84)
Q Consensus        80 ~   80 (84)
                      .
T Consensus       324 y  324 (1265)
T KOG1920|consen  324 Y  324 (1265)
T ss_pred             e
Confidence            3

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=92.38  E-value=1.3  Score=25.48  Aligned_cols=73  Identities=10%  Similarity=0.143  Sum_probs=40.0

Q ss_pred             EEEeccCCCcCEEEEEEccCCCEEEEe-CCCCcEEEEeCCC--CCC------------CCCEEEEEEccCCCEEEEecCC
Q psy16880          5 IHTFVHSNNSAVRSISFCSKQHTLISG-GDDGSICMWNLNS--KLC------------DSAVRSISFCSKQRTLISGGDD   69 (84)
Q Consensus         5 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~~~~~~d~~~--~~~------------~~~v~~~~~~~~~~~~~~~~~~   69 (84)
                      ++.+..+ -..-+.|+|+|+++.+..+ +..+.+.-|++..  ...            .+..-.++...++.+..+....
T Consensus       155 ~~l~~~~-~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~  233 (307)
T COG3386         155 VRLLDDD-LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG  233 (307)
T ss_pred             EEeecCc-EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC
Confidence            3333333 3445789999999776655 4446676666652  111            2333344444455544333333


Q ss_pred             C-cEEEEeCC
Q psy16880         70 G-SICMWNLN   78 (84)
Q Consensus        70 ~-~i~~~~~~   78 (84)
                      + .+.+|++.
T Consensus       234 g~~v~~~~pd  243 (307)
T COG3386         234 GGRVVRFNPD  243 (307)
T ss_pred             CceEEEECCC
Confidence            2 67777766

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.33  E-value=1.9  Score=27.39  Aligned_cols=63  Identities=6%  Similarity=0.206  Sum_probs=44.4

Q ss_pred             CcCEEEEEEcc--CCCEEEEeCCCCcEEEEeCC-----CCCC--------------CCCEEEEEEccCCCEEEEecCCCc
Q psy16880         13 NSAVRSISFCS--KQHTLISGGDDGSICMWNLN-----SKLC--------------DSAVRSISFCSKQRTLISGGDDGS   71 (84)
Q Consensus        13 ~~~v~~~~~~~--~~~~l~~~~~~~~~~~~d~~-----~~~~--------------~~~v~~~~~~~~~~~~~~~~~~~~   71 (84)
                      .+.|..++|..  +++.+++.+....+.++-..     ...+              ..+|....|.++|..++..  ++.
T Consensus        72 ~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNq  149 (631)
T PF12234_consen   72 DDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQ  149 (631)
T ss_pred             CCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCE
Confidence            57889999976  77888888888888877432     1111              5678889999888655443  467


Q ss_pred             EEEEeC
Q psy16880         72 ICMWNL   77 (84)
Q Consensus        72 i~~~~~   77 (84)
                      +.+++-
T Consensus       150 lfv~dk  155 (631)
T PF12234_consen  150 LFVFDK  155 (631)
T ss_pred             EEEECC
Confidence            777753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=92.23  E-value=1.4  Score=25.73  Aligned_cols=67  Identities=13%  Similarity=0.224  Sum_probs=48.8

Q ss_pred             CcCEEEEEEccCCCEEEEeCC---CCcEEEEeCCCC--CC---------CCCEEEEEEccCCCEEEEecC-CCcEEEEeC
Q psy16880         13 NSAVRSISFCSKQHTLISGGD---DGSICMWNLNSK--LC---------DSAVRSISFCSKQRTLISGGD-DGSICMWNL   77 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~---~~~~~~~d~~~~--~~---------~~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~   77 (84)
                      .+...-|+++|+++.|.++..   .+.+..|.++..  ..         ....+.++++++++.++++.. .+.|.++-+
T Consensus        39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~  118 (346)
T COG2706          39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPL  118 (346)
T ss_pred             cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEc
Confidence            455678899999988887754   467777766642  22         445589999999998887765 578888876


Q ss_pred             CC
Q psy16880         78 NS   79 (84)
Q Consensus        78 ~~   79 (84)
                      +.
T Consensus       119 ~~  120 (346)
T COG2706         119 QA  120 (346)
T ss_pred             cc
Confidence            54

>KOG1008|consensus

Probab=92.04  E-value=0.39  Score=30.27  Aligned_cols=63  Identities=17%  Similarity=0.408  Sum_probs=40.9

Q ss_pred             CEEEEEEcc-CCCEEEEeCCCCcEEEEe-CCCCCC------------CCCEEEEEEccCCCEEEE-ec-CCCcEEEEeCC
Q psy16880         15 AVRSISFCS-KQHTLISGGDDGSICMWN-LNSKLC------------DSAVRSISFCSKQRTLIS-GG-DDGSICMWNLN   78 (84)
Q Consensus        15 ~v~~~~~~~-~~~~l~~~~~~~~~~~~d-~~~~~~------------~~~v~~~~~~~~~~~~~~-~~-~~~~i~~~~~~   78 (84)
                      .+..+.+.| .+.++++-. ++.+.+|| .+.-..            ..++..++|+|..+-++. .. ..++|+++++.
T Consensus       197 ~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  197 YVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             hcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            455566777 667776655 99999999 332211            346999999996654433 33 34678888764

>KOG2395|consensus

Probab=91.52  E-value=2.3  Score=26.61  Aligned_cols=73  Identities=12%  Similarity=0.248  Sum_probs=44.0

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCC--EE-----EEeCCCCcEEEEeCCCCCC-------------CCCEEEEEEccCCC
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQH--TL-----ISGGDDGSICMWNLNSKLC-------------DSAVRSISFCSKQR   61 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~--~l-----~~~~~~~~~~~~d~~~~~~-------------~~~v~~~~~~~~~~   61 (84)
                      |+.+.+-.-+ .. |.-+.+.|+..  .+     +.|-.+..+.-||.+....             .....|++-..+| 
T Consensus       366 GKIVeEWk~~-~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-  442 (644)
T KOG2395|consen  366 GKIVEEWKFE-DD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-  442 (644)
T ss_pred             ceeeeEeecc-CC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-
Confidence            4444444443 22 55556666442  22     3455666777788874332             3345555555555 


Q ss_pred             EEEEecCCCcEEEEeC
Q psy16880         62 TLISGGDDGSICMWNL   77 (84)
Q Consensus        62 ~~~~~~~~~~i~~~~~   77 (84)
                      .++.++.+|.|++||-
T Consensus       443 ~IvvgS~~GdIRLYdr  458 (644)
T KOG2395|consen  443 YIVVGSLKGDIRLYDR  458 (644)
T ss_pred             eEEEeecCCcEEeehh
Confidence            5888999999999975

>KOG1008|consensus

Probab=91.48  E-value=0.078  Score=33.09  Aligned_cols=60  Identities=18%  Similarity=0.410  Sum_probs=45.4

Q ss_pred             EEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEcc-CCCEEEEecCCCcEEEEe
Q psy16880         16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCS-KQRTLISGGDDGSICMWN   76 (84)
Q Consensus        16 v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~-~~~~~~~~~~~~~i~~~~   76 (84)
                      ..+++|..+.+++++|.....+.++|++....      ...+.++...| ...+++ ...++.|.+||
T Consensus       157 qns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~c-s~~dg~iAiwD  223 (783)
T KOG1008|consen  157 QNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFC-SNSDGDIAIWD  223 (783)
T ss_pred             ccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCcee-ccccCceeecc
Confidence            34778888889999999999999999974333      44677788888 444444 44599999999

>KOG1912|consensus

Probab=91.43  E-value=0.26  Score=31.76  Aligned_cols=77  Identities=18%  Similarity=0.276  Sum_probs=54.3

Q ss_pred             EEEeccCCCcCEEEEEEccCCCEEEEe---------CCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEE
Q psy16880          5 IHTFVHSNNSAVRSISFCSKQHTLISG---------GDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLIS   65 (84)
Q Consensus         5 ~~~~~~~~~~~v~~~~~~~~~~~l~~~---------~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~   65 (84)
                      .+.+..| .+.|.++.|.-..+++..+         +....+.+=|++++..          +.+|..+..+..+++++.
T Consensus       460 ~~~fsvh-t~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai  538 (1062)
T KOG1912|consen  460 AASFSVH-TSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAI  538 (1062)
T ss_pred             hhhhccc-ccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEE
Confidence            3445567 8888999987655544332         2223455667776643          678999999988999998


Q ss_pred             ecCCCcEEEEeCCCCee
Q psy16880         66 GGDDGSICMWNLNSKLC   82 (84)
Q Consensus        66 ~~~~~~i~~~~~~~~~~   82 (84)
                      .-++..+-+||+++..+
T Consensus       539 ~Fr~~plEiwd~kt~~~  555 (1062)
T KOG1912|consen  539 LFRREPLEIWDLKTLRM  555 (1062)
T ss_pred             EecccchHHHhhccchH
Confidence            88899999999876543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=91.16  E-value=1.9  Score=25.02  Aligned_cols=57  Identities=12%  Similarity=0.101  Sum_probs=35.4

Q ss_pred             CCEEEEeCCCCcEEEEeCCCCCC--CC------CEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         25 QHTLISGGDDGSICMWNLNSKLC--DS------AVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        25 ~~~l~~~~~~~~~~~~d~~~~~~--~~------~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      +..+..+..++.+..+|..++..  +.      .......  .+..++.++.++.+.++|..+++.+
T Consensus       279 ~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~  343 (377)
T TIGR03300       279 DNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFV  343 (377)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence            45566667777888888765543  11      1111111  2456778888999999998877653

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=90.79  E-value=1.4  Score=22.90  Aligned_cols=29  Identities=14%  Similarity=0.188  Sum_probs=22.7

Q ss_pred             CEEEEEEccCC------CEEEEecCCCcEEEEeCC
Q psy16880         50 AVRSISFCSKQ------RTLISGGDDGSICMWNLN   78 (84)
Q Consensus        50 ~v~~~~~~~~~------~~~~~~~~~~~i~~~~~~   78 (84)
                      .+..++|+|.|      ..+++...++.+.+|...
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            78899999954      355666778999999765

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=90.65  E-value=1.7  Score=23.62  Aligned_cols=65  Identities=14%  Similarity=0.216  Sum_probs=42.6

Q ss_pred             CcCEEEEEEccCCCEEEEeCCC--------CcEEEEeCCCCCC------CCCEEEEEEccCCCEEE-EecCCCcEEEEeC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDD--------GSICMWNLNSKLC------DSAVRSISFCSKQRTLI-SGGDDGSICMWNL   77 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~--------~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~-~~~~~~~i~~~~~   77 (84)
                      ......+++.++|.+.++-...        +.+..++.. ...      -.....++|+|+++.+. +-+..+.|..+++
T Consensus        85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~  163 (246)
T PF08450_consen   85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDL  163 (246)
T ss_dssp             TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEE
T ss_pred             cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEec
Confidence            4567889999999977765433        335445554 222      34578999999998665 5566777888876


Q ss_pred             C
Q psy16880         78 N   78 (84)
Q Consensus        78 ~   78 (84)
                      .
T Consensus       164 ~  164 (246)
T PF08450_consen  164 D  164 (246)
T ss_dssp             E
T ss_pred             c
Confidence            4

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=90.35  E-value=3.5  Score=26.77  Aligned_cols=67  Identities=12%  Similarity=0.323  Sum_probs=43.4

Q ss_pred             cCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC------------CCCE----------EEEEEccCCCEEEEecCCC
Q psy16880         14 SAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC------------DSAV----------RSISFCSKQRTLISGGDDG   70 (84)
Q Consensus        14 ~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~------------~~~v----------~~~~~~~~~~~~~~~~~~~   70 (84)
                      .+...++|+| +...|+.....|...+||+.....            .+.+          ..+.|.++...++.+. ..
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~  224 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RS  224 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CC
Confidence            4677899999 567899999999999999922111            1112          2556666655555554 34


Q ss_pred             cEEEEeCCCCe
Q psy16880         71 SICMWNLNSKL   81 (84)
Q Consensus        71 ~i~~~~~~~~~   81 (84)
                      .+.++|+.+..
T Consensus       225 ~l~~~d~~~~~  235 (765)
T PF10214_consen  225 KLMLIDFESNW  235 (765)
T ss_pred             ceEEEECCCCC
Confidence            46667766543

These proteins are found in fungi.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=90.35  E-value=2.6  Score=25.37  Aligned_cols=64  Identities=20%  Similarity=0.303  Sum_probs=37.9

Q ss_pred             EEEEEccCCCEEE-EeCCCCcEEEE--eCCCCCC------CCCEEEEEEccCCCEEEEec-CCCc--EEEEeCCCC
Q psy16880         17 RSISFCSKQHTLI-SGGDDGSICMW--NLNSKLC------DSAVRSISFCSKQRTLISGG-DDGS--ICMWNLNSK   80 (84)
Q Consensus        17 ~~~~~~~~~~~l~-~~~~~~~~~~~--d~~~~~~------~~~v~~~~~~~~~~~~~~~~-~~~~--i~~~~~~~~   80 (84)
                      ..-+|+|+|+.++ +...++...+|  |+.....      .+.-..=.|+|+|+.++-.+ ..|.  |.+.+...+
T Consensus       241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~  316 (425)
T COG0823         241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS  316 (425)
T ss_pred             CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC
Confidence            3457899997664 55666655555  5544333      23334667899998887554 3444  555555544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.34  E-value=1.7  Score=26.35  Aligned_cols=50  Identities=20%  Similarity=0.272  Sum_probs=29.8

Q ss_pred             CCEEEEeCCCCcEEEEeCCCCCC----C-CCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880         25 QHTLISGGDDGSICMWNLNSKLC----D-SAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus        25 ~~~l~~~~~~~~~~~~d~~~~~~----~-~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      |.+|...+.+ .+.+||..+...    . ..|..+-|++++.+++..+. ..+.+++
T Consensus       117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~-~~i~il~  171 (443)
T PF04053_consen  117 GNLLGVKSSD-FICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTK-DSIYILK  171 (443)
T ss_dssp             SSSEEEEETT-EEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred             CcEEEEECCC-CEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeC-CeEEEEE
Confidence            6666555444 789999987766    2 23788999999988887764 4566654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3616|consensus

Probab=90.33  E-value=2.6  Score=27.81  Aligned_cols=61  Identities=16%  Similarity=0.335  Sum_probs=40.2

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      ...+.++.-+|.+..++.+..|+++.+|+......      ..+-..+.|...|  +++...|....-|
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~   80 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAW   80 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhhee
Confidence            45567888899999999999999999988754432      2233334444333  4455555555555

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=90.29  E-value=2  Score=23.92  Aligned_cols=77  Identities=9%  Similarity=0.282  Sum_probs=46.9

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------------------CCCEEEEEEccCCCEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------------------DSAVRSISFCSKQRTL   63 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------------------~~~v~~~~~~~~~~~~   63 (84)
                      |+.++.+.-...+....+++..++.++++.-.++.+.++++.....                  +..+-+++|.|....+
T Consensus        53 G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L  132 (248)
T PF06977_consen   53 GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRL  132 (248)
T ss_dssp             --EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEE
Confidence            5666666544245678888887777777776788888877732211                  3458899999987777


Q ss_pred             EEecCCCcEEEEeCC
Q psy16880         64 ISGGDDGSICMWNLN   78 (84)
Q Consensus        64 ~~~~~~~~i~~~~~~   78 (84)
                      +.+-......++..+
T Consensus       133 ~v~kE~~P~~l~~~~  147 (248)
T PF06977_consen  133 FVAKERKPKRLYEVN  147 (248)
T ss_dssp             EEEEESSSEEEEEEE
T ss_pred             EEEeCCCChhhEEEc
Confidence            777666666666543

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=90.08  E-value=2.4  Score=24.46  Aligned_cols=53  Identities=13%  Similarity=0.218  Sum_probs=37.3

Q ss_pred             cCEEEEEEccCCCEEE-EeCCCCcEEEEeCCCCCC-----CCCEEEEEEccCCCEEEEec
Q psy16880         14 SAVRSISFCSKQHTLI-SGGDDGSICMWNLNSKLC-----DSAVRSISFCSKQRTLISGG   67 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~-~~~~~~~~~~~d~~~~~~-----~~~v~~~~~~~~~~~~~~~~   67 (84)
                      +-+-+|++++++..++ ++-..+.+.+||..++..     -..++.++-.+++ ++++.+
T Consensus       217 ~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~ssG  275 (305)
T PF07433_consen  217 GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLVSSG  275 (305)
T ss_pred             CceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc-eEEeCC
Confidence            5688999999988765 445556888999987766     3456777766666 444443

>KOG2377|consensus

Probab=89.98  E-value=3.1  Score=25.69  Aligned_cols=30  Identities=17%  Similarity=0.320  Sum_probs=27.2

Q ss_pred             CCCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880         48 DSAVRSISFCSKQRTLISGGDDGSICMWNL   77 (84)
Q Consensus        48 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (84)
                      ++.|..+.|+++.+.++.--.++++.+++.
T Consensus        66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf   95 (657)
T KOG2377|consen   66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNF   95 (657)
T ss_pred             CCceeEEEeccCcceEEEEecCceEEEEec
Confidence            779999999999999999888999998876

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.58  E-value=1.4  Score=26.99  Aligned_cols=34  Identities=24%  Similarity=0.487  Sum_probs=24.0

Q ss_pred             cCEEEEEEcc----CCCEEEEeCCCCcEEEEeCCCCCC
Q psy16880         14 SAVRSISFCS----KQHTLISGGDDGSICMWNLNSKLC   47 (84)
Q Consensus        14 ~~v~~~~~~~----~~~~l~~~~~~~~~~~~d~~~~~~   47 (84)
                      +.+..++.+.    +..++++-+.|+.+++||+.+...
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence            3455566665    667899999999999999986543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=89.37  E-value=1.9  Score=25.90  Aligned_cols=36  Identities=11%  Similarity=0.118  Sum_probs=29.4

Q ss_pred             CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         48 DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        48 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      ...+..++.+|.+++.++...-|.|.++|+.++..+
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vv  342 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVV  342 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhh
Confidence            456788999999988888777789999999877654

>KOG3630|consensus

Probab=89.23  E-value=3.7  Score=28.15  Aligned_cols=51  Identities=16%  Similarity=0.323  Sum_probs=38.3

Q ss_pred             cCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEE
Q psy16880         14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLI   64 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~   64 (84)
                      ....+++|+|.|..++.|...|.+.-|...-...          ...|.+++|.....+++
T Consensus       199 ~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  199 NSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             cceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEE
Confidence            4578999999999999999999988775432211          46789999986655544

>KOG2444|consensus

Probab=89.00  E-value=2.6  Score=23.36  Aligned_cols=54  Identities=22%  Similarity=0.199  Sum_probs=32.4

Q ss_pred             CCCEEEEeCCCCcEEEEeCCCCCCCCCEEEEEEccCCCEEEEecCCCcEEEEeCC
Q psy16880         24 KQHTLISGGDDGSICMWNLNSKLCDSAVRSISFCSKQRTLISGGDDGSICMWNLN   78 (84)
Q Consensus        24 ~~~~l~~~~~~~~~~~~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~   78 (84)
                      ++.+.+++..++.++.|.+...+....+..+-+.| +..+++.+.++.+.+|++.
T Consensus       113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~-~e~~ivv~sd~~i~~a~~S  166 (238)
T KOG2444|consen  113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES-GEELIVVGSDEFLKIADTS  166 (238)
T ss_pred             ccceeEEeccCCceeeeccccCceeeeeccccCCC-cceeEEecCCceEEeeccc
Confidence            44578889999999999887544322222233322 3445555556667666544

>KOG2377|consensus

Probab=88.74  E-value=4  Score=25.26  Aligned_cols=54  Identities=11%  Similarity=0.164  Sum_probs=40.1

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----------CCCEEEEEEccCCCEEEEec
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----------DSAVRSISFCSKQRTLISGG   67 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----------~~~v~~~~~~~~~~~~~~~~   67 (84)
                      .++|.+++|++|.+.++.-..+..+.++.......           ...|.++.|..+ .-++...
T Consensus        66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~  130 (657)
T KOG2377|consen   66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFIT  130 (657)
T ss_pred             CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEe
Confidence            57899999999999999999999998887643322           335888888765 3344444

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=88.52  E-value=3.8  Score=24.72  Aligned_cols=69  Identities=19%  Similarity=0.203  Sum_probs=43.7

Q ss_pred             CcCEEEEEEccCCCEEEEe---CCC-CcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEe-cCCCc--EEEEeCCC
Q psy16880         13 NSAVRSISFCSKQHTLISG---GDD-GSICMWNLNSKLC------DSAVRSISFCSKQRTLISG-GDDGS--ICMWNLNS   79 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~---~~~-~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~-~~~~~--i~~~~~~~   79 (84)
                      ...+..-+|+|++..++--   ... ..+.++|+.....      ++.-..-+|+|+++.++.+ ..++.  |.+.|+..
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~  271 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG  271 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence            3456666888887654322   222 4577788877655      4556678899999877654 44555  55556665


Q ss_pred             Ce
Q psy16880         80 KL   81 (84)
Q Consensus        80 ~~   81 (84)
                      +.
T Consensus       272 ~~  273 (425)
T COG0823         272 KN  273 (425)
T ss_pred             Cc
Confidence            43

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=88.37  E-value=2.9  Score=23.08  Aligned_cols=54  Identities=22%  Similarity=0.421  Sum_probs=38.1

Q ss_pred             CCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880         24 KQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus        24 ~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~   79 (84)
                      .++.++.|..+| +.+++......      ...|..+...|+-..++.-+ |+.+.++++..
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~   65 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDS   65 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchh
Confidence            577888888888 77777722222      34588888888777666654 58899988754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PRK13616 lipoprotein LpqB; Provisional

Probab=88.35  E-value=4.7  Score=25.50  Aligned_cols=58  Identities=7%  Similarity=0.084  Sum_probs=35.7

Q ss_pred             EEEEEEccCCCEEEEeCCC------------CcEEEEeCCCCCC----CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880         16 VRSISFCSKQHTLISGGDD------------GSICMWNLNSKLC----DSAVRSISFCSKQRTLISGGDDGSICM   74 (84)
Q Consensus        16 v~~~~~~~~~~~l~~~~~~------------~~~~~~d~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~i~~   74 (84)
                      ...-.|+|++..+.+....            +.+.+.++.....    ...|..+.|+|+|..++... ++.+.+
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence            4566899987766555322            2333334332222    35799999999999887665 455555

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=87.07  E-value=3.7  Score=22.92  Aligned_cols=69  Identities=10%  Similarity=0.208  Sum_probs=42.5

Q ss_pred             EeccCCCcCEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880          7 TFVHSNNSAVRSISFCSKQH-TLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSICMWNL   77 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (84)
                      .+.+- ...+..++|+|+.. +++.....+.+.-.+.. +..        -...-++++..++.++++.-.++.+.++++
T Consensus        16 ~l~g~-~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   16 PLPGI-LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             E-TT---S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             ECCCc-cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            44555 56699999999755 66666777777666654 222        245677888777766666656777777765

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=87.02  E-value=4.5  Score=23.86  Aligned_cols=50  Identities=12%  Similarity=0.232  Sum_probs=33.0

Q ss_pred             EEEEccCCCEEEEe-CCC----CcEEEEeCCCCCC-----CCC-EEEEEEccCCCEEEEec
Q psy16880         18 SISFCSKQHTLISG-GDD----GSICMWNLNSKLC-----DSA-VRSISFCSKQRTLISGG   67 (84)
Q Consensus        18 ~~~~~~~~~~l~~~-~~~----~~~~~~d~~~~~~-----~~~-v~~~~~~~~~~~~~~~~   67 (84)
                      .++++|++++++-+ +..    ..+.++|+.++..     ... ...+.|.+++..++...
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~  188 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTR  188 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEE
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEE
Confidence            56889999987644 222    3588899987755     111 12389999987765543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=86.99  E-value=4  Score=23.25  Aligned_cols=49  Identities=10%  Similarity=0.445  Sum_probs=31.2

Q ss_pred             CCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEec------CCCcEEEEeCCCCe
Q psy16880         33 DDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGG------DDGSICMWNLNSKL   81 (84)
Q Consensus        33 ~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~   81 (84)
                      ....+++||....+-       .+.|..+.|..+...++.|.      ....+..||..+..
T Consensus        14 ~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~   75 (281)
T PF12768_consen   14 PCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT   75 (281)
T ss_pred             CCCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence            355788888765433       66788899876555555543      23457777766543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=86.96  E-value=2.4  Score=24.86  Aligned_cols=36  Identities=14%  Similarity=0.274  Sum_probs=24.4

Q ss_pred             CCCEEEEEEccCCC-EEEEe-cCCCcEEEEeCCCCeec
Q psy16880         48 DSAVRSISFCSKQR-TLISG-GDDGSICMWNLNSKLCD   83 (84)
Q Consensus        48 ~~~v~~~~~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~   83 (84)
                      +..+.+++.+.+.+ .+... ..++.+.+||..+++.+
T Consensus       288 ~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~  325 (342)
T PF06433_consen  288 EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV  325 (342)
T ss_dssp             EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred             CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence            45677888887654 44443 45788999999998865

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.50  E-value=4.6  Score=23.39  Aligned_cols=77  Identities=12%  Similarity=0.304  Sum_probs=50.8

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----------------CCCEEEEEEccCCCEEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----------------DSAVRSISFCSKQRTLI   64 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----------------~~~v~~~~~~~~~~~~~   64 (84)
                      |+.++++.-..-+....+.|..++.+.++--.++.+.++.+.....                 +...-+++|.|..+.+.
T Consensus       117 GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~  196 (316)
T COG3204         117 GDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLF  196 (316)
T ss_pred             CceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEE
Confidence            5666666443234446677777777777777777777665543321                 34577899999888787


Q ss_pred             EecCCCcEEEEeCC
Q psy16880         65 SGGDDGSICMWNLN   78 (84)
Q Consensus        65 ~~~~~~~i~~~~~~   78 (84)
                      ..-..+.+.+|...
T Consensus       197 ~aKEr~P~~I~~~~  210 (316)
T COG3204         197 VAKERNPIGIFEVT  210 (316)
T ss_pred             EEEccCCcEEEEEe
Confidence            77777777777554

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=86.49  E-value=5.1  Score=23.99  Aligned_cols=47  Identities=11%  Similarity=0.215  Sum_probs=31.4

Q ss_pred             cCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCC
Q psy16880         14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQ   60 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~   60 (84)
                      +++..|+.+|+++.++.-..++.+.+....-...        ......+.|+.+.
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence            5788999999999888777788877665433222        2345566665543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=86.21  E-value=1.3  Score=16.69  Aligned_cols=16  Identities=6%  Similarity=0.030  Sum_probs=8.7

Q ss_pred             cCEEEEEEccCCCEEE
Q psy16880         14 SAVRSISFCSKQHTLI   29 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~   29 (84)
                      +......|+|+|+.++
T Consensus         9 ~~~~~p~~SpDGk~i~   24 (39)
T PF07676_consen    9 GDDGSPAWSPDGKYIY   24 (39)
T ss_dssp             SSEEEEEE-TTSSEEE
T ss_pred             ccccCEEEecCCCEEE
Confidence            3445566777776554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG1832|consensus

Probab=85.88  E-value=0.37  Score=31.81  Aligned_cols=80  Identities=13%  Similarity=0.177  Sum_probs=49.6

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCC--cEEEEeCCCCCC----CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDG--SICMWNLNSKLC----DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--~~~~~d~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      |.....+..| .+.|.-+.-+.+|..+++.+...  ...+|++.....    -..-.++.|+.....-+.|+......+|
T Consensus      1133 G~~e~s~ncH-~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~Y 1211 (1516)
T KOG1832|consen 1133 GSMEESVNCH-QSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLY 1211 (1516)
T ss_pred             cccccccccc-ccccccccccCCcceeeeeccccCchHHHhccccccCccccccccceeehhhhHHHHHhcccccceEEE
Confidence            4444455566 78888777777887666554433  456899865322    2344667777554434455555678899


Q ss_pred             eCCCCee
Q psy16880         76 NLNSKLC   82 (84)
Q Consensus        76 ~~~~~~~   82 (84)
                      |+.++.+
T Consensus      1212 DvqT~~~ 1218 (1516)
T KOG1832|consen 1212 DVQTCSP 1218 (1516)
T ss_pred             ecccCcH
Confidence            9887653

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=85.75  E-value=6.9  Score=24.74  Aligned_cols=54  Identities=9%  Similarity=0.246  Sum_probs=39.4

Q ss_pred             CCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCC
Q psy16880         24 KQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLN   78 (84)
Q Consensus        24 ~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~   78 (84)
                      ...+++.|+..|.+++||-.....       ...|-.+..+.+|.++++-| ...+.+-|++
T Consensus       572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~  632 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP  632 (776)
T ss_pred             cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence            346889999999999999754433       56788888888998777665 3455555554

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=85.62  E-value=3.9  Score=21.81  Aligned_cols=55  Identities=18%  Similarity=0.219  Sum_probs=34.4

Q ss_pred             EEEEeCCCCc-EEEEeCCCCCC-----CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         27 TLISGGDDGS-ICMWNLNSKLC-----DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        27 ~l~~~~~~~~-~~~~d~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      .+.....++. +.+ |..++..     ...+... ....+..++..+.++.+..||+++++.+
T Consensus       175 ~v~~~~~~g~~~~~-d~~tg~~~w~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  175 RVYVSSGDGRVVAV-DLATGEKLWSKPISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             EEEEECCTSSEEEE-ETTTTEEEEEECSS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred             EEEEEcCCCeEEEE-ECCCCCEEEEecCCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence            5555665664 555 8876653     1222221 2345566777778999999999998853

...

>KOG1916|consensus

Probab=85.30  E-value=5.8  Score=26.78  Aligned_cols=64  Identities=20%  Similarity=0.369  Sum_probs=41.6

Q ss_pred             cCEEEEEEcc---CCCEEEEeCCCCcEEEEeCCCCCC-----------------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880         14 SAVRSISFCS---KQHTLISGGDDGSICMWNLNSKLC-----------------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus        14 ~~v~~~~~~~---~~~~l~~~~~~~~~~~~d~~~~~~-----------------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      ..+.-+.|+|   +...++.+..++.+.+..++....                 ++.+---..+|+|+.++..+.||.+.
T Consensus       181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~  260 (1283)
T KOG1916|consen  181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVG  260 (1283)
T ss_pred             CCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccc
Confidence            3445566666   456677777788888765543322                 22222223689999999999999888


Q ss_pred             EEeC
Q psy16880         74 MWNL   77 (84)
Q Consensus        74 ~~~~   77 (84)
                      .|.+
T Consensus       261 f~Qi  264 (1283)
T KOG1916|consen  261 FYQI  264 (1283)
T ss_pred             eeee
Confidence            7754

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.15  E-value=5.5  Score=23.09  Aligned_cols=64  Identities=13%  Similarity=0.161  Sum_probs=38.2

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      ++.+.++.|+|+.+.|.+..+...-.++--..+..        -...-.+.|..++.+.++--.++.+.++.
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~  156 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFT  156 (316)
T ss_pred             cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEE
Confidence            56689999999999888877777666654444433        12223455555554444444455555443

>KOG2066|consensus

Probab=85.12  E-value=6.8  Score=25.78  Aligned_cols=62  Identities=15%  Similarity=0.192  Sum_probs=40.9

Q ss_pred             CEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCCCCCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880         15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLCDSAVRSISFCSKQRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~   79 (84)
                      .+.++++  ...+|+-|..+|.+.+++..... ......-+-.-.|..+++|+.||++.+..+-+
T Consensus        41 ~is~~av--~~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~  102 (846)
T KOG2066|consen   41 AISCCAV--HDKFFALGTHRGAVYLTTCQGNP-KTNFDHSSSILEGEYVASCSDDGKVVIGSLFT  102 (846)
T ss_pred             HHHHHHh--hcceeeeccccceEEEEecCCcc-cccccccccccCCceEEEecCCCcEEEeeccC
Confidence            3445544  46788999999999998875432 11111111144688999999999888876543

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=85.03  E-value=1.3  Score=15.65  Aligned_cols=9  Identities=11%  Similarity=0.132  Sum_probs=3.4

Q ss_pred             EEEEccCCC
Q psy16880         53 SISFCSKQR   61 (84)
Q Consensus        53 ~~~~~~~~~   61 (84)
                      +++..+++.
T Consensus         6 gvav~~~g~   14 (28)
T PF01436_consen    6 GVAVDSDGN   14 (28)
T ss_dssp             EEEEETTSE
T ss_pred             EEEEeCCCC
Confidence            333333333

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=84.95  E-value=8.5  Score=25.11  Aligned_cols=64  Identities=6%  Similarity=0.243  Sum_probs=45.2

Q ss_pred             cCEEEEEEc--cCCCEEEEeCCCCcEEEEeCCCC--CC--------CCCEEEEEEccCC---C---EEEEecCCCcEEEE
Q psy16880         14 SAVRSISFC--SKQHTLISGGDDGSICMWNLNSK--LC--------DSAVRSISFCSKQ---R---TLISGGDDGSICMW   75 (84)
Q Consensus        14 ~~v~~~~~~--~~~~~l~~~~~~~~~~~~d~~~~--~~--------~~~v~~~~~~~~~---~---~~~~~~~~~~i~~~   75 (84)
                      .-++.++++  ...++++.+++...|.||-....  ..        ...|.+|+|.++.   .   .+++++-.|.+.+|
T Consensus       164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~  243 (717)
T PF08728_consen  164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTF  243 (717)
T ss_pred             CceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEE
Confidence            456788888  67788888888888887654321  11        4578899997643   2   56677778888887


Q ss_pred             eC
Q psy16880         76 NL   77 (84)
Q Consensus        76 ~~   77 (84)
                      ++
T Consensus       244 ~I  245 (717)
T PF08728_consen  244 KI  245 (717)
T ss_pred             EE
Confidence            66

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=84.77  E-value=6.5  Score=23.59  Aligned_cols=43  Identities=19%  Similarity=0.403  Sum_probs=31.5

Q ss_pred             cEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880         36 SICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus        36 ~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~   79 (84)
                      .+.+|+......      ...+-++.|..+. .+++...+|.++++|+..
T Consensus        62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G  110 (410)
T PF04841_consen   62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFG  110 (410)
T ss_pred             EEEEECCCCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCC
Confidence            377777654433      5688899998755 466777899999999853

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1916|consensus

Probab=84.58  E-value=5.7  Score=26.80  Aligned_cols=24  Identities=17%  Similarity=0.289  Sum_probs=21.0

Q ss_pred             EEccCCCEEEEeCCCCcEEEEeCC
Q psy16880         20 SFCSKQHTLISGGDDGSICMWNLN   43 (84)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~~~d~~   43 (84)
                      ..+|||..++.+..||.+.+|.+-
T Consensus       242 ~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  242 SLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             eeCCCCcEEEEeecCCccceeeee
Confidence            368999999999999999998774

>KOG3630|consensus

Probab=83.93  E-value=2.1  Score=29.23  Aligned_cols=62  Identities=8%  Similarity=0.053  Sum_probs=44.2

Q ss_pred             EEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880         16 VRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNL   77 (84)
Q Consensus        16 v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (84)
                      ..++.|+|.- ...+....|+.+.+..+.....       ....++++|+|.|+.++.+-..|++.-|.+
T Consensus       158 ~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P  227 (1405)
T KOG3630|consen  158 QLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP  227 (1405)
T ss_pred             cccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeec
Confidence            4577787743 3445556677777665543322       457899999999999999988888887754

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=83.22  E-value=9.7  Score=24.40  Aligned_cols=33  Identities=12%  Similarity=0.346  Sum_probs=24.1

Q ss_pred             CcCEEEEEEccCCCEEEEe-CCCCcEEEEeCCCC
Q psy16880         13 NSAVRSISFCSKQHTLISG-GDDGSICMWNLNSK   45 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~-~~~~~~~~~d~~~~   45 (84)
                      .+.|.|-+|.+||+.|+.+ +..-.-.+||-...
T Consensus       155 ~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  155 SGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             CceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            5789999999999877655 43435568887554

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=83.06  E-value=2  Score=16.34  Aligned_cols=19  Identities=16%  Similarity=0.298  Sum_probs=10.4

Q ss_pred             CCEEEEeCCCCcEEEEeCC
Q psy16880         25 QHTLISGGDDGSICMWNLN   43 (84)
Q Consensus        25 ~~~l~~~~~~~~~~~~d~~   43 (84)
                      +..+..++.++.+..+|..
T Consensus        21 ~g~vyv~~~dg~l~ald~~   39 (40)
T PF13570_consen   21 GGRVYVGTGDGNLYALDAA   39 (40)
T ss_dssp             TSEEEEE-TTSEEEEEETT
T ss_pred             CCEEEEEcCCCEEEEEeCC
Confidence            4455556666666666543

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=81.70  E-value=12  Score=24.48  Aligned_cols=64  Identities=11%  Similarity=0.227  Sum_probs=45.2

Q ss_pred             cCEEEEEEcc--CCCEEEEeCCCCcEEEEeCCC-------C-------------CC------CCCEEEEEEc--cCCCEE
Q psy16880         14 SAVRSISFCS--KQHTLISGGDDGSICMWNLNS-------K-------------LC------DSAVRSISFC--SKQRTL   63 (84)
Q Consensus        14 ~~v~~~~~~~--~~~~l~~~~~~~~~~~~d~~~-------~-------------~~------~~~v~~~~~~--~~~~~~   63 (84)
                      ..|.-|....  +...|+.+..+|.|.+|....       .             .+      +....+++++  ...+++
T Consensus       101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEE
Confidence            4455565554  446889999999999995410       0             01      5677888888  778888


Q ss_pred             EEecCCCcEEEEeC
Q psy16880         64 ISGGDDGSICMWNL   77 (84)
Q Consensus        64 ~~~~~~~~i~~~~~   77 (84)
                      +.++....|.||-.
T Consensus       181 AVSsNs~~VTVFaf  194 (717)
T PF08728_consen  181 AVSSNSQEVTVFAF  194 (717)
T ss_pred             EEecCCceEEEEEE
Confidence            88888888888754

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=81.46  E-value=2.3  Score=16.00  Aligned_cols=10  Identities=0%  Similarity=0.235  Sum_probs=4.2

Q ss_pred             CcEEEEeCCC
Q psy16880         70 GSICMWNLNS   79 (84)
Q Consensus        70 ~~i~~~~~~~   79 (84)
                      +.|.++|..+
T Consensus        14 ~~v~~id~~~   23 (42)
T TIGR02276        14 NTVSVIDTAT   23 (42)
T ss_pred             CEEEEEECCC
Confidence            3444444433

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>smart00564 PQQ beta-propeller repeat

Probab=80.83  E-value=2.1  Score=15.22  Aligned_cols=19  Identities=16%  Similarity=0.356  Sum_probs=10.6

Q ss_pred             EEEecCCCcEEEEeCCCCe
Q psy16880         63 LISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        63 ~~~~~~~~~i~~~~~~~~~   81 (84)
                      +..++.++.+..+|..+++
T Consensus         9 v~~~~~~g~l~a~d~~~G~   27 (33)
T smart00564        9 VYVGSTDGTLYALDAKTGE   27 (33)
T ss_pred             EEEEcCCCEEEEEEcccCc
Confidence            4444555666666665554

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=80.51  E-value=11  Score=23.10  Aligned_cols=28  Identities=14%  Similarity=0.181  Sum_probs=16.8

Q ss_pred             cCEEEEEEccCCCEEEEeCCCCcEEEEeC
Q psy16880         14 SAVRSISFCSKQHTLISGGDDGSICMWNL   42 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~~~~~~~~~~~~d~   42 (84)
                      .....++++|+++.++. ..++...++..
T Consensus        33 ~~p~~ls~npngr~v~V-~g~geY~iyt~   60 (443)
T PF04053_consen   33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTA   60 (443)
T ss_dssp             S--SEEEE-TTSSEEEE-EETTEEEEEET
T ss_pred             cCCeeEEECCCCCEEEE-EcCCEEEEEEc
Confidence            34567888888887777 44555666653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=80.12  E-value=8.9  Score=21.91  Aligned_cols=62  Identities=19%  Similarity=0.325  Sum_probs=40.3

Q ss_pred             CEEEEEEccCCCEEEEeCCCCcEEEEeCCC--CCC--------CCCEEEEEEccCCCEEEEecCCCcEEEEeCC
Q psy16880         15 AVRSISFCSKQHTLISGGDDGSICMWNLNS--KLC--------DSAVRSISFCSKQRTLISGGDDGSICMWNLN   78 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~--~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~   78 (84)
                      .+.++..  .+.+++.|.....+.++..+.  ...        ...+.++.+-+++..++.+..++.+.++...
T Consensus       131 ~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  131 YITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             SEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             EEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            4455544  356888888777777664332  212        4457888887666688888889999888664

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=80.04  E-value=9.9  Score=22.42  Aligned_cols=57  Identities=11%  Similarity=0.122  Sum_probs=35.0

Q ss_pred             CCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880         25 QHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        25 ~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                      +..++.+..++.+..+|..+++.      ...+.+.... .+..++.+..++.+.-+|..+++.
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~  182 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV-SDGLVLVHTSNGMLQALNESDGAV  182 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE-ECCEEEEECCCCEEEEEEccCCCE
Confidence            44566677888888899887766      2222111111 123455666678888888877764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	84
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-08

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 1   DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCD------SAVRSI 54
           +G ++ T    ++S+VR ++F     T+ S  DD ++ +WN N +L        S+VR +
Sbjct: 456 NGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGV 514
Query: 55  SFCSKQRTLISGGDDGSICMWNLNSKLC 82
           +F    +T+ S  DD ++ +WN N +L 
Sbjct: 515 AFSPDGQTIASASDDKTVKLWNRNGQLL 542

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	84
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.82
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.81
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.78
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.77
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.77
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.76
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.76
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.76
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.75
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.75
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.74
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.74
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.74
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.74
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.74
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.74
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.74
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.74
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.74
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.73
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.73
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.73
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.73
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.72
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.72
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.72
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.72
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.71
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.71
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.71
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.71
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.71
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.7
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.7
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.69
2pm7_B	297	Protein transport protein SEC13, protein transport	99.69
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.69
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.69
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.68
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.68
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.68
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.68
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.68
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.67
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.67
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.67
2pm7_B	297	Protein transport protein SEC13, protein transport	99.67
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.66
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.66
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.66
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.65
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.65
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.64
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.64
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.64
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.64
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.64
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.64
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.63
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.63
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.63
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.62
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.62
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.62
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.62
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.62
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.62
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.61
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.61
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.61
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.61
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.61
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.61
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.6
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.6
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.6
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.59
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.59
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.59
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.59
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.59
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.59
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.59
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.58
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.58
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.57
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.57
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.57
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.57
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.57
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.56
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.56
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.56
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.56
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.55
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.55
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.55
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.55
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.54
3jro_A	753	Fusion protein of protein transport protein SEC13	99.54
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.54
3jro_A	753	Fusion protein of protein transport protein SEC13	99.53
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.53
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.53
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.53
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.53
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.53
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.53
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.52
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.52
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.51
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.51
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.51
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.51
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.5
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.5
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.48
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.46
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.46
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.43
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.43
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.39
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.38
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.37
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.37
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.36
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.35
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.33
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.31
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.28
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.11
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.1
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.09
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.05
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.02
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.01
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.99
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.97
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.97
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.95
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.89
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.82
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.82
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.82
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.82
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.8
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.77
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.77
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.76
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.75
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.74
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.72
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.68
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.68
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.67
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.65
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.65
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.65
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.65
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.63
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.61
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.56
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.56
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.55
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.53
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.53
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.53
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.47
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.43
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.42
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.41
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.38
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.35
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.32
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.31
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.3
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.28
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.26
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.25
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.22
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.19
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.09
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.07
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.06
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.04
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.03
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.02
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.02
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.01
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.96
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.93
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.92
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.9
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.77
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.76
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.75
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.73
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.72
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.72
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.7
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.6
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.54
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	97.47
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.45
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.39
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.39
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.28
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	97.24
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.15
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.1
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.05
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	96.99
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.91
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	96.9
2qe8_A	343	Uncharacterized protein; structural genomics, join	96.85
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	96.84
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	96.81
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.75
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.75
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.66
2qe8_A	343	Uncharacterized protein; structural genomics, join	96.58
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	96.56
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	96.49
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.46
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	96.37
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	96.35
2ece_A	462	462AA long hypothetical selenium-binding protein;	96.27
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.19
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.16
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.14
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	96.07
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	95.84
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	95.63
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	95.48
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.46
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	95.21
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	95.17
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	94.78
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	94.7
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	94.56
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.53
2ece_A	462	462AA long hypothetical selenium-binding protein;	94.5
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	94.47
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	94.34
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	94.05
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	93.96
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	93.73
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	93.67
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	93.66
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	93.43
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	93.23
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	92.88
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	92.73
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	92.48
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	92.32
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	92.31
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	91.96
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	91.77
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	90.87
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	90.72
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	90.34
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	89.6
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	88.79
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	88.44
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	88.36
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	87.97
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	87.57
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	86.0
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	82.39
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	80.44
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	80.32
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	80.04

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.82  E-value=5.4e-19  Score=97.42  Aligned_cols=74  Identities=14%  Similarity=0.162  Sum_probs=66.3

Q ss_pred             EEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880          6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSICMWNL   77 (84)
Q Consensus         6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (84)
                      ..+.+| ...|.+++|+|++++|++|+.|+.+++||+.+...        ...|.+++|+|+++++++++.|++|+||++
T Consensus       263 ~~~~~~-~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~i  341 (365)
T 4h5i_A          263 KQVTNR-FKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKL  341 (365)
T ss_dssp             EEEESS-CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred             eeecCC-CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            345667 88999999999999999999999999999987654        568999999999999999999999999998


Q ss_pred             CCC
Q psy16880         78 NSK   80 (84)
Q Consensus        78 ~~~   80 (84)
                      +..
T Consensus       342 p~~  344 (365)
T 4h5i_A          342 PLN  344 (365)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            643

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.81  E-value=1.7e-18  Score=94.01  Aligned_cols=82  Identities=24%  Similarity=0.578  Sum_probs=74.1

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      +++++..+++| ...|.+++|+|++.+|++++.|+.+++||+.....       ...|.+++|+|++..+++++.|+.|+
T Consensus       195 ~~~~~~~~~~h-~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~  273 (321)
T 3ow8_A          195 TGKLLHTLEGH-AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVK  273 (321)
T ss_dssp             TTEEEEEECCC-SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCcEEEEEccc-CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence            36778888888 99999999999999999999999999999987654       56799999999999999999999999


Q ss_pred             EEeCCCCeec
Q psy16880         74 MWNLNSKLCD   83 (84)
Q Consensus        74 ~~~~~~~~~~   83 (84)
                      +||+++++++
T Consensus       274 iwd~~~~~~~  283 (321)
T 3ow8_A          274 VWDVGTRTCV  283 (321)
T ss_dssp             EEETTTTEEE
T ss_pred             EEeCCCCEEE
Confidence            9999988764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.78  E-value=1.5e-17  Score=90.73  Aligned_cols=81  Identities=23%  Similarity=0.503  Sum_probs=73.0

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      +++++..+.+| .+.|.+++|+|++..+++++.|+.+++||++....       ...|.+++|+|++..+++++.|+.|+
T Consensus       173 ~~~~~~~~~~h-~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~  251 (340)
T 1got_B          173 TGQQTTTFTGH-TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR  251 (340)
T ss_dssp             TTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCcEEEEEcCC-CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEE
Confidence            35677888888 99999999999999999999999999999987654       56799999999999999999999999


Q ss_pred             EEeCCCCee
Q psy16880         74 MWNLNSKLC   82 (84)
Q Consensus        74 ~~~~~~~~~   82 (84)
                      +||+++.+.
T Consensus       252 iwd~~~~~~  260 (340)
T 1got_B          252 LFDLRADQE  260 (340)
T ss_dssp             EEETTTTEE
T ss_pred             EEECCCCcE
Confidence            999987664

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.77  E-value=9.3e-18  Score=90.40  Aligned_cols=80  Identities=24%  Similarity=0.403  Sum_probs=71.9

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      ++.+++++| .+.|.+++|+|++..+++++.|+.+++||+.+...       ...|.+++|+|+++.+++++.|+.|++|
T Consensus         4 ~~~~~~~~h-~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw   82 (304)
T 2ynn_A            4 DIKKTFSNR-SDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (304)
T ss_dssp             CCEEEEEEE-CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             eeEEeecCC-CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence            356788898 99999999999999999999999999999987644       5689999999999999999999999999


Q ss_pred             eCCCCeec
Q psy16880         76 NLNSKLCD   83 (84)
Q Consensus        76 ~~~~~~~~   83 (84)
                      |+.+++++
T Consensus        83 d~~~~~~~   90 (304)
T 2ynn_A           83 NYNTGEKV   90 (304)
T ss_dssp             ETTTCCEE
T ss_pred             ECCCCcEE
Confidence            99887653

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.77  E-value=1.5e-17  Score=95.12  Aligned_cols=76  Identities=29%  Similarity=0.544  Sum_probs=66.9

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      +..+.+++| .+.|.+++|+|+++++++++.|+.+++||......      ...|.+++|+|+++++++++.|+.|++||
T Consensus         7 ~e~~~L~GH-~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd   85 (577)
T 2ymu_A            7 KERNRLEAH-SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN   85 (577)
T ss_dssp             CEEEEECCC-SSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEeeEECCC-CCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            345678999 99999999999999999999999999999643322      67899999999999999999999999999


Q ss_pred             CCC
Q psy16880         77 LNS   79 (84)
Q Consensus        77 ~~~   79 (84)
                      ...
T Consensus        86 ~~~   88 (577)
T 2ymu_A           86 RNG   88 (577)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            754

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.76  E-value=1e-17  Score=93.34  Aligned_cols=82  Identities=27%  Similarity=0.483  Sum_probs=73.4

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      +|++++.+++| .+.|.+++|+|++..+++|+.|+.+++||+.....       ...|.+++|+|++..+++++.|+.|+
T Consensus       139 ~~~~~~~l~~h-~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~  217 (410)
T 1vyh_C          139 TGDFERTLKGH-TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK  217 (410)
T ss_dssp             TCCCCEEECCC-SSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             CCcEEEEEecc-CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence            35677888898 99999999999999999999999999999976554       56899999999999999999999999


Q ss_pred             EEeCCCCeec
Q psy16880         74 MWNLNSKLCD   83 (84)
Q Consensus        74 ~~~~~~~~~~   83 (84)
                      +||+++++++
T Consensus       218 ~wd~~~~~~~  227 (410)
T 1vyh_C          218 MWEVQTGYCV  227 (410)
T ss_dssp             EEETTTCCEE
T ss_pred             EEECCCCcEE
Confidence            9999887654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.76  E-value=2.9e-17  Score=88.50  Aligned_cols=80  Identities=24%  Similarity=0.448  Sum_probs=70.4

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEcc-CCCEEEEecCCCc
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCS-KQRTLISGGDDGS   71 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~-~~~~~~~~~~~~~   71 (84)
                      +|+++..+++| .+.|.+++|+|++..+++++.|+.+++||+.....        ...|.+++|+| ++..+++++.|+.
T Consensus        86 ~~~~~~~~~~h-~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~  164 (304)
T 2ynn_A           86 TGEKVVDFEAH-PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT  164 (304)
T ss_dssp             TCCEEEEEECC-SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred             CCcEEEEEeCC-CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence            46778888998 99999999999999999999999999999976522        56799999999 6789999999999


Q ss_pred             EEEEeCCCCe
Q psy16880         72 ICMWNLNSKL   81 (84)
Q Consensus        72 i~~~~~~~~~   81 (84)
                      |++||++...
T Consensus       165 v~iwd~~~~~  174 (304)
T 2ynn_A          165 VKVWSLGQST  174 (304)
T ss_dssp             EEEEETTCSS
T ss_pred             EEEEECCCCC
Confidence            9999987654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.76  E-value=6.1e-17  Score=87.44  Aligned_cols=78  Identities=23%  Similarity=0.397  Sum_probs=68.6

Q ss_pred             eEEEeccCCCcCEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC------------CCCEEEEEEccCCCEEEEecCCC
Q psy16880          4 IIHTFVHSNNSAVRSISFCSK-QHTLISGGDDGSICMWNLNSKLC------------DSAVRSISFCSKQRTLISGGDDG   70 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~   70 (84)
                      +..++++| .+.|.+++|+|+ +.+|++|+.|+.+++||+.....            ...|.+++|+|+++.+++++.|+
T Consensus        30 l~~tL~GH-~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~  108 (340)
T 4aow_A           30 LRGTLKGH-NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG  108 (340)
T ss_dssp             EEEEECCC-SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEECCc-cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence            45678999 999999999997 68999999999999999876543            46899999999999999999999


Q ss_pred             cEEEEeCCCCee
Q psy16880         71 SICMWNLNSKLC   82 (84)
Q Consensus        71 ~i~~~~~~~~~~   82 (84)
                      .+++|+......
T Consensus       109 ~i~~~~~~~~~~  120 (340)
T 4aow_A          109 TLRLWDLTTGTT  120 (340)
T ss_dssp             EEEEEETTTTEE
T ss_pred             cceEEeecccce
Confidence            999999876653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.75  E-value=3.7e-17  Score=88.27  Aligned_cols=79  Identities=18%  Similarity=0.393  Sum_probs=63.7

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------------------------------
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------------------------------   47 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------------------------------   47 (84)
                      ++++..+.+| .+.|.+++|+|+++.|++++.|+.+++||+.....                                  
T Consensus       205 ~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd  283 (340)
T 4aow_A          205 CKLKTNHIGH-TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWD  283 (340)
T ss_dssp             TEEEEEECCC-SSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEE
T ss_pred             CceeeEecCC-CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEE
Confidence            4567788888 99999999999999999999999999999876533                                  


Q ss_pred             ----------------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880         48 ----------------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        48 ----------------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (84)
                                            ...|.+++|+|+++.+++++.|+.|++||++++.
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          284 LEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             TTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             CCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence                                  2356778888888888888888888888877664

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.75  E-value=6.3e-17  Score=88.85  Aligned_cols=75  Identities=9%  Similarity=0.201  Sum_probs=67.9

Q ss_pred             EEEeccCCCcCEEEEEEccCCCEEEEeCCCCc-EEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880          5 IHTFVHSNNSAVRSISFCSKQHTLISGGDDGS-ICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSICM   74 (84)
Q Consensus         5 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i~~   74 (84)
                      +..+.+| .+.|.+++|+|++.+|++++.|+. +++||+.+...         ...|.+++|+|+++.+++++.|+.|++
T Consensus       188 ~~~~~~h-~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~i  266 (355)
T 3vu4_A          188 GVLIKAH-TNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHV  266 (355)
T ss_dssp             CEEECCC-SSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEE
T ss_pred             cEEEEcc-CCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEE
Confidence            6778888 999999999999999999999998 99999987654         347999999999999999999999999


Q ss_pred             EeCCCC
Q psy16880         75 WNLNSK   80 (84)
Q Consensus        75 ~~~~~~   80 (84)
                      ||++..
T Consensus       267 w~~~~~  272 (355)
T 3vu4_A          267 FEIFND  272 (355)
T ss_dssp             EESSCC
T ss_pred             EEccCC
Confidence            998754

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.74  E-value=1.1e-16  Score=87.36  Aligned_cols=80  Identities=24%  Similarity=0.397  Sum_probs=71.2

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSI   72 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i   72 (84)
                      ++++..+.+| ...|.+++|+|++..+++++.|+.+++||++....         ...|.+++|+|+++.+++++.|+.|
T Consensus       216 ~~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i  294 (340)
T 1got_B          216 GMCRQTFTGH-ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC  294 (340)
T ss_dssp             CSEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             CeeEEEEcCC-cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeE
Confidence            5677888888 99999999999999999999999999999986543         2369999999999999999999999


Q ss_pred             EEEeCCCCee
Q psy16880         73 CMWNLNSKLC   82 (84)
Q Consensus        73 ~~~~~~~~~~   82 (84)
                      ++||..+++.
T Consensus       295 ~vwd~~~~~~  304 (340)
T 1got_B          295 NVWDALKADR  304 (340)
T ss_dssp             EEEETTTCCE
T ss_pred             EEEEcccCcE
Confidence            9999887654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.74  E-value=8e-17  Score=93.43  Aligned_cols=81  Identities=20%  Similarity=0.322  Sum_probs=71.4

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------------CCCEEEEEEccCCCEEEEec
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------------DSAVRSISFCSKQRTLISGG   67 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------------~~~v~~~~~~~~~~~~~~~~   67 (84)
                      ++++..+.+| .+.|.+++|+|+++.|++++.|+.+++||+..+..              ...|.+++|+|++..+++++
T Consensus       180 ~~~~~~l~~H-~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s  258 (611)
T 1nr0_A          180 FKFKSTFGEH-TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS  258 (611)
T ss_dssp             BEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE
T ss_pred             CeEeeeeccc-cCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEe
Confidence            4567788888 99999999999999999999999999999865422              45799999999999999999


Q ss_pred             CCCcEEEEeCCCCeec
Q psy16880         68 DDGSICMWNLNSKLCD   83 (84)
Q Consensus        68 ~~~~i~~~~~~~~~~~   83 (84)
                      .|+.|++||+++++++
T Consensus       259 ~D~~v~lWd~~~~~~~  274 (611)
T 1nr0_A          259 ADKTIKIWNVATLKVE  274 (611)
T ss_dssp             TTSEEEEEETTTTEEE
T ss_pred             CCCeEEEEeCCCCcee
Confidence            9999999999887653

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.74  E-value=3.3e-17  Score=90.08  Aligned_cols=78  Identities=12%  Similarity=0.161  Sum_probs=67.5

Q ss_pred             CceEEEeccCCCcCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEcc-CCCEEEEecCCCcEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC------DSAVRSISFCS-KQRTLISGGDDGSIC   73 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~-~~~~~~~~~~~~~i~   73 (84)
                      +++++.+++| ...|.+++|+|++ .+|++++.|+.+++||+.....      ...|.+++|+| ++..+++++.|+.|+
T Consensus       259 ~~~~~~~~~~-~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~  337 (357)
T 4g56_B          259 PDSAQTSAVH-SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVL  337 (357)
T ss_dssp             GGGCEEECCC-SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred             CcEeEEEecc-ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEE
Confidence            4567788888 8999999999987 5788999999999999987655      67899999998 788999999999999


Q ss_pred             EEeCCCC
Q psy16880         74 MWNLNSK   80 (84)
Q Consensus        74 ~~~~~~~   80 (84)
                      +|++...
T Consensus       338 iW~~~~~  344 (357)
T 4g56_B          338 HHHLPSE  344 (357)
T ss_dssp             EEECC--
T ss_pred             EEECCCC
Confidence            9998643

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.74  E-value=1.1e-16  Score=87.01  Aligned_cols=76  Identities=21%  Similarity=0.512  Sum_probs=69.0

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICM   74 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~   74 (84)
                      ++++..+.+| ...|.+++|+|++..|++++.|+.+++||+.+...       ...|.+++|+|++..+++++.|+.|++
T Consensus       238 ~~~~~~~~~h-~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~v  316 (321)
T 3ow8_A          238 ANLAGTLSGH-ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHI  316 (321)
T ss_dssp             CCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred             cceeEEEcCC-CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence            4567788888 99999999999999999999999999999987654       678999999999999999999999999


Q ss_pred             EeCC
Q psy16880         75 WNLN   78 (84)
Q Consensus        75 ~~~~   78 (84)
                      ||.+
T Consensus       317 wd~p  320 (321)
T 3ow8_A          317 YDCP  320 (321)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            9964

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.74  E-value=9.2e-17  Score=87.05  Aligned_cols=77  Identities=19%  Similarity=0.379  Sum_probs=69.9

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      .+++.+++| ...|.+++|+|++.++++++.|+.+++||+.+...       ...|.+++|+|++..+++++.|+.|++|
T Consensus        56 ~~~~~~~~h-~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vw  134 (319)
T 3frx_A           56 VPVRSFKGH-SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW  134 (319)
T ss_dssp             EEEEEEECC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             ccceEEeCC-cccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            456788888 99999999999999999999999999999987654       6789999999999999999999999999


Q ss_pred             eCCCC
Q psy16880         76 NLNSK   80 (84)
Q Consensus        76 ~~~~~   80 (84)
                      |++..
T Consensus       135 d~~~~  139 (319)
T 3frx_A          135 TIKGQ  139 (319)
T ss_dssp             ETTSC
T ss_pred             ECCCC
Confidence            98754

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.74  E-value=1.1e-16  Score=88.65  Aligned_cols=81  Identities=19%  Similarity=0.313  Sum_probs=72.4

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICM   74 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~   74 (84)
                      ++++..+..| .+.|.+++|+|++..|++++.++.+.+||+.....       ...|.+++|+|++..+++++.|+.+++
T Consensus       129 ~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~i  207 (420)
T 3vl1_A          129 NLQREIDQAH-VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRL  207 (420)
T ss_dssp             CEEEEETTSS-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             cceeeecccc-cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence            4566677788 99999999999999999999999999999987655       678999999999999999999999999


Q ss_pred             EeCCCCeec
Q psy16880         75 WNLNSKLCD   83 (84)
Q Consensus        75 ~~~~~~~~~   83 (84)
                      ||+++++++
T Consensus       208 wd~~~~~~~  216 (420)
T 3vl1_A          208 WECGTGTTI  216 (420)
T ss_dssp             EETTTTEEE
T ss_pred             eECCCCcee
Confidence            999887754

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.74  E-value=4.1e-17  Score=89.53  Aligned_cols=80  Identities=15%  Similarity=0.144  Sum_probs=66.9

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCC-EEEEecCCCcE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQR-TLISGGDDGSI   72 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~-~~~~~~~~~~i   72 (84)
                      ++++++.+++| .+.|.+++|+|++ .+|++++.|+.+++||+.....      ...|.+++|+|++. ++++++.|+.|
T Consensus       246 ~~~~~~~~~~h-~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v  324 (344)
T 4gqb_B          246 STSCVLSSAVH-SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQV  324 (344)
T ss_dssp             C--CCEEEECC-SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred             CCcEEEEEcCC-CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeE
Confidence            35677888898 9999999999987 5789999999999999987655      67899999999875 56789999999


Q ss_pred             EEEeCCCCe
Q psy16880         73 CMWNLNSKL   81 (84)
Q Consensus        73 ~~~~~~~~~   81 (84)
                      ++|++.+..
T Consensus       325 ~~w~v~~~~  333 (344)
T 4gqb_B          325 VHHVVPTEP  333 (344)
T ss_dssp             EEEECCC--
T ss_pred             EEEECCCCC
Confidence            999987643

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.74  E-value=1.5e-16  Score=85.55  Aligned_cols=81  Identities=22%  Similarity=0.505  Sum_probs=72.7

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICM   74 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~   74 (84)
                      ++....+.+| ...|.+++|+|++..+++++.++.+.+||+.....       ...|.+++|+|++..+++++.|+.|++
T Consensus        55 ~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~i  133 (312)
T 4ery_A           55 GKFEKTISGH-KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI  133 (312)
T ss_dssp             CCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred             cccchhhccC-CCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Confidence            5667788888 99999999999999999999999999999987654       567999999999999999999999999


Q ss_pred             EeCCCCeec
Q psy16880         75 WNLNSKLCD   83 (84)
Q Consensus        75 ~~~~~~~~~   83 (84)
                      ||+++++++
T Consensus       134 wd~~~~~~~  142 (312)
T 4ery_A          134 WDVKTGKCL  142 (312)
T ss_dssp             EETTTCCEE
T ss_pred             EECCCCEEE
Confidence            999877653

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.74  E-value=1.5e-16  Score=85.56  Aligned_cols=80  Identities=23%  Similarity=0.419  Sum_probs=71.1

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      .+...+.+| .+.|.+++|+|+++.+++++.++.+++||......       ...|.+++|+|+++.+++++.|+.|++|
T Consensus        14 ~~~~~~~gh-~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw   92 (312)
T 4ery_A           14 ALKFTLAGH-TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW   92 (312)
T ss_dssp             EEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             eeEEEEccc-CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence            355678888 99999999999999999999999999999976544       5679999999999999999999999999


Q ss_pred             eCCCCeec
Q psy16880         76 NLNSKLCD   83 (84)
Q Consensus        76 ~~~~~~~~   83 (84)
                      |+++++++
T Consensus        93 d~~~~~~~  100 (312)
T 4ery_A           93 DVSSGKCL  100 (312)
T ss_dssp             ETTTCCEE
T ss_pred             ECCCCcEE
Confidence            99887653

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.73  E-value=1.9e-16  Score=86.46  Aligned_cols=76  Identities=22%  Similarity=0.423  Sum_probs=68.9

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      .+...+.+| ...|.+++|+|++.++++++.|+.+++||+.+...       ...|.+++|+|++..+++++.|+.|++|
T Consensus        67 ~~~~~l~~h-~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~w  145 (343)
T 2xzm_R           67 IPHKALTGH-NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW  145 (343)
T ss_dssp             EEEEEECCC-SSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEE
T ss_pred             cccchhccC-CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEE
Confidence            456678888 99999999999999999999999999999987654       5689999999999999999999999999


Q ss_pred             eCCC
Q psy16880         76 NLNS   79 (84)
Q Consensus        76 ~~~~   79 (84)
                      |+..
T Consensus       146 d~~~  149 (343)
T 2xzm_R          146 NILG  149 (343)
T ss_dssp             ESSS
T ss_pred             eccC
Confidence            9864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.73  E-value=1.6e-16  Score=86.47  Aligned_cols=77  Identities=14%  Similarity=0.370  Sum_probs=63.6

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCC----C-------CCCEEEEEEccCCCEEEEecCCCc
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKL----C-------DSAVRSISFCSKQRTLISGGDDGS   71 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~----~-------~~~v~~~~~~~~~~~~~~~~~~~~   71 (84)
                      +++..+++| .+.|.+++|+|++.+|++++.|+.+++||+....    .       ...|.+++|+|++..+++++.|+.
T Consensus        98 ~~~~~~~~h-~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~  176 (330)
T 2hes_X           98 DLLAIIEGH-ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDT  176 (330)
T ss_dssp             EEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred             eeEEEEcCC-CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCe
Confidence            456678888 9999999999999999999999999999995321    1       567999999999999999999999


Q ss_pred             EEEEeCCCC
Q psy16880         72 ICMWNLNSK   80 (84)
Q Consensus        72 i~~~~~~~~   80 (84)
                      |++|+..+.
T Consensus       177 i~iW~~~~~  185 (330)
T 2hes_X          177 VRIWKDYDD  185 (330)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEECCCC
Confidence            999997654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.73  E-value=2.7e-16  Score=86.34  Aligned_cols=81  Identities=22%  Similarity=0.391  Sum_probs=71.5

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCc
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGS   71 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~   71 (84)
                      +++++..++.| ...|.+++|+|++..+++++.|+.+++||++....         ...+.+++|+|++..+++++.|+.
T Consensus       229 ~~~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~  307 (354)
T 2pbi_B          229 SGQCVQAFETH-ESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYT  307 (354)
T ss_dssp             TCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCcEEEEecCC-CCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCc
Confidence            36778888888 99999999999999999999999999999986543         236889999999999999999999


Q ss_pred             EEEEeCCCCee
Q psy16880         72 ICMWNLNSKLC   82 (84)
Q Consensus        72 i~~~~~~~~~~   82 (84)
                      |++||+.+++.
T Consensus       308 i~vwd~~~~~~  318 (354)
T 2pbi_B          308 INVWDVLKGSR  318 (354)
T ss_dssp             EEEEETTTCSE
T ss_pred             EEEEECCCCce
Confidence            99999977654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.73  E-value=9e-17  Score=89.60  Aligned_cols=77  Identities=25%  Similarity=0.509  Sum_probs=68.6

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      +|+++..+.+| .+.|.+++|+|++..+++++.|+.+++||+.....       ...|.+++|+|++..+++++.|+.|+
T Consensus       327 ~~~~~~~~~~h-~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~  405 (410)
T 1vyh_C          327 TGMCLMTLVGH-DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK  405 (410)
T ss_dssp             TTEEEEEEECC-SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEE
T ss_pred             CCceEEEEECC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEE
Confidence            36678888888 99999999999999999999999999999987655       56899999999999999999999999


Q ss_pred             EEeCC
Q psy16880         74 MWNLN   78 (84)
Q Consensus        74 ~~~~~   78 (84)
                      +|+.+
T Consensus       406 vW~~r  410 (410)
T 1vyh_C          406 VWECR  410 (410)
T ss_dssp             EEC--
T ss_pred             EEeCC
Confidence            99864

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.72  E-value=4.6e-16  Score=85.42  Aligned_cols=81  Identities=23%  Similarity=0.527  Sum_probs=71.6

Q ss_pred             CCceEEEeccCCCcCEEEEEEcc--CCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCc
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCS--KQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGS   71 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~   71 (84)
                      +++++..+.+| ...|.+++++|  ++..+++++.|+.+++||+++...       ...|.+++|+|++..+++++.|+.
T Consensus       185 ~~~~~~~~~~h-~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~  263 (354)
T 2pbi_B          185 SGQLLQSFHGH-GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT  263 (354)
T ss_dssp             TCCEEEEEECC-SSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCeEEEEEcCC-CCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe
Confidence            36778888898 99999999988  468999999999999999987655       568999999999999999999999


Q ss_pred             EEEEeCCCCee
Q psy16880         72 ICMWNLNSKLC   82 (84)
Q Consensus        72 i~~~~~~~~~~   82 (84)
                      +++||++..+.
T Consensus       264 v~lwd~~~~~~  274 (354)
T 2pbi_B          264 CRLYDLRADRE  274 (354)
T ss_dssp             EEEEETTTTEE
T ss_pred             EEEEECCCCcE
Confidence            99999987653

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.72  E-value=1.5e-16  Score=86.19  Aligned_cols=79  Identities=18%  Similarity=0.274  Sum_probs=68.8

Q ss_pred             eEEEeccCCCcCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC------------CCCEEEEEEccCCCEEEEecCCC
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC------------DSAVRSISFCSKQRTLISGGDDG   70 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~   70 (84)
                      +..++++| .+.|.+++|+|++ .+|++++.|+.+++||+.....            ...|.+++|+|++..+++++.|+
T Consensus         9 l~~~l~gH-~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~   87 (319)
T 3frx_A            9 LRGTLEGH-NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK   87 (319)
T ss_dssp             EEEEECCC-SSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEccc-cceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence            56688999 9999999999964 8999999999999999853211            56899999999999999999999


Q ss_pred             cEEEEeCCCCeec
Q psy16880         71 SICMWNLNSKLCD   83 (84)
Q Consensus        71 ~i~~~~~~~~~~~   83 (84)
                      .|++||+.+++++
T Consensus        88 ~v~~wd~~~~~~~  100 (319)
T 3frx_A           88 TLRLWDVATGETY  100 (319)
T ss_dssp             EEEEEETTTTEEE
T ss_pred             EEEEEECCCCCee
Confidence            9999999988754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.72  E-value=4e-16  Score=84.73  Aligned_cols=78  Identities=17%  Similarity=0.298  Sum_probs=70.1

Q ss_pred             EEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880          5 IHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNL   77 (84)
Q Consensus         5 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (84)
                      ...+.+| .+.|.+++|+|++..+++++.++.+.+||+.....       ...|.+++|+|++..+++++.|+.|++||+
T Consensus        25 ~~~l~~h-~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           25 AIKLTGH-ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             EEEEECC-SSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             cEEEEEe-eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            3457888 99999999999999999999999999999987655       668999999999999999999999999999


Q ss_pred             CCCeec
Q psy16880         78 NSKLCD   83 (84)
Q Consensus        78 ~~~~~~   83 (84)
                      .+++++
T Consensus       104 ~~~~~~  109 (369)
T 3zwl_B          104 SNGQCV  109 (369)
T ss_dssp             TTCCEE
T ss_pred             CCCcEE
Confidence            887653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.72  E-value=4.8e-16  Score=85.31  Aligned_cols=82  Identities=12%  Similarity=0.352  Sum_probs=69.2

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccC-CCEEEEecCC
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSK-QRTLISGGDD   69 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~-~~~~~~~~~~   69 (84)
                      ++++++.+.+| .+.|.+++|++++ ..|++++.|+.+++||++....         ...+.+++|+|+ +.++++++.|
T Consensus       158 ~~~~~~~~~~h-~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d  236 (344)
T 4gqb_B          158 QQVVLSSYRAH-AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN  236 (344)
T ss_dssp             TTEEEEEECCC-SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT
T ss_pred             CCcEEEEEcCc-CCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC
Confidence            46788899999 9999999999987 5789999999999999987655         346889999984 5678899999


Q ss_pred             CcEEEEeCCCCeec
Q psy16880         70 GSICMWNLNSKLCD   83 (84)
Q Consensus        70 ~~i~~~~~~~~~~~   83 (84)
                      +.|++||+++++++
T Consensus       237 g~v~~wd~~~~~~~  250 (344)
T 4gqb_B          237 GTVSLVDTKSTSCV  250 (344)
T ss_dssp             SEEEEEESCC--CC
T ss_pred             CcEEEEECCCCcEE
Confidence            99999999987754

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.71  E-value=1.2e-16  Score=91.34  Aligned_cols=75  Identities=29%  Similarity=0.628  Sum_probs=67.4

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICM   74 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~   74 (84)
                      +|++++.+++| .+.|.+++|+|++++|++++.|+.+++||......      ...|.+++|+|+++.+++++.|+.|++
T Consensus       497 ~~~~~~~~~~h-~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~  575 (577)
T 2ymu_A          497 NGQLLQTLTGH-SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKL  575 (577)
T ss_dssp             TSCEEEEEECC-SSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred             CCCEEEEEeCC-CCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEE
Confidence            46788889999 99999999999999999999999999999753322      678999999999999999999999999


Q ss_pred             Ee
Q psy16880         75 WN   76 (84)
Q Consensus        75 ~~   76 (84)
                      ||
T Consensus       576 Wd  577 (577)
T 2ymu_A          576 WN  577 (577)
T ss_dssp             EC
T ss_pred             eC
Confidence            97

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.71  E-value=1.6e-16  Score=86.86  Aligned_cols=77  Identities=18%  Similarity=0.346  Sum_probs=68.2

Q ss_pred             ceEEEeccCCCc-CEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecCCCc
Q psy16880          3 SIIHTFVHSNNS-AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGDDGS   71 (84)
Q Consensus         3 ~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~   71 (84)
                      +++.++++| .+ .|.+++|+|++.+|++++.|+.+++||+.....          ...|.+++|+|++..+++++.|+.
T Consensus         6 ~~~~~~~~h-~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~   84 (345)
T 3fm0_A            6 VLLGRVPAH-PDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT   84 (345)
T ss_dssp             EEEEEECCS-TTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEeeeecCC-CCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence            467788888 66 999999999999999999999999999876431          567999999999999999999999


Q ss_pred             EEEEeCCCC
Q psy16880         72 ICMWNLNSK   80 (84)
Q Consensus        72 i~~~~~~~~   80 (84)
                      +++|+....
T Consensus        85 v~iw~~~~~   93 (345)
T 3fm0_A           85 TCIWKKNQD   93 (345)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEccCC
Confidence            999998754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.71  E-value=1.7e-16  Score=87.73  Aligned_cols=79  Identities=19%  Similarity=0.377  Sum_probs=68.9

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------------CCCEEEEEEccCCCEEEEecC
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------------DSAVRSISFCSKQRTLISGGD   68 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------------~~~v~~~~~~~~~~~~~~~~~   68 (84)
                      +.+..+.+| .+.|.+++|+|++..|++++.|+.+++||++....              ...+.+++|+|+++.+++++.
T Consensus       240 ~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~  318 (380)
T 3iz6_a          240 RAVRTYHGH-EGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS  318 (380)
T ss_dssp             CCCEEECCC-SSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT
T ss_pred             cceEEECCc-CCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC
Confidence            456778888 99999999999999999999999999999987543              123889999999999999999


Q ss_pred             CCcEEEEeCCCCee
Q psy16880         69 DGSICMWNLNSKLC   82 (84)
Q Consensus        69 ~~~i~~~~~~~~~~   82 (84)
                      |+.|++||...++.
T Consensus       319 dg~i~vwd~~~~~~  332 (380)
T 3iz6_a          319 NGDCYVWDTLLAEM  332 (380)
T ss_dssp             TSCEEEEETTTCCE
T ss_pred             CCCEEEEECCCCce
Confidence            99999999876654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.71  E-value=9.6e-17  Score=88.68  Aligned_cols=76  Identities=21%  Similarity=0.373  Sum_probs=68.8

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      .+.+.+++| .+.|.+++|+|++..|++|+.|+.+++||..+...       ...|.+++|+|++..+++++.|+.+++|
T Consensus        57 ~~~~~l~gH-~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw  135 (380)
T 3iz6_a           57 VCCRTLQGH-SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIF  135 (380)
T ss_dssp             EEEEEECCC-SSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEE
T ss_pred             EEeeccccc-ccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEE
Confidence            467789999 99999999999999999999999999999976654       5678899999999999999999999999


Q ss_pred             eCCC
Q psy16880         76 NLNS   79 (84)
Q Consensus        76 ~~~~   79 (84)
                      ++.+
T Consensus       136 ~~~~  139 (380)
T 3iz6_a          136 NLSS  139 (380)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.71  E-value=6.3e-16  Score=84.36  Aligned_cols=79  Identities=20%  Similarity=0.283  Sum_probs=68.8

Q ss_pred             eEEEeccCCCcCEEEEEE-----cc-CCCEEEEeCCCCcEEEEeCCCCCC--------------CCCEEEEEEccCCCEE
Q psy16880          4 IIHTFVHSNNSAVRSISF-----CS-KQHTLISGGDDGSICMWNLNSKLC--------------DSAVRSISFCSKQRTL   63 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~-----~~-~~~~l~~~~~~~~~~~~d~~~~~~--------------~~~v~~~~~~~~~~~~   63 (84)
                      +...+++| .+.|.+++|     ++ ++..|++|+.|+.+++||+.....              ...|.+++|+|++..+
T Consensus        13 ~~~~l~gH-~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l   91 (343)
T 2xzm_R           13 KRGILEGH-SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA   91 (343)
T ss_dssp             EEEEEECC-SSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred             eeeeeccc-hhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence            46678899 999999999     66 899999999999999999864321              5679999999999999


Q ss_pred             EEecCCCcEEEEeCCCCeec
Q psy16880         64 ISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        64 ~~~~~~~~i~~~~~~~~~~~   83 (84)
                      ++++.|+.|++||+++++++
T Consensus        92 ~s~s~D~~v~lwd~~~~~~~  111 (343)
T 2xzm_R           92 ISSSWDKTLRLWDLRTGTTY  111 (343)
T ss_dssp             EEEETTSEEEEEETTSSCEE
T ss_pred             EEEcCCCcEEEEECCCCcEE
Confidence            99999999999999887653

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.70  E-value=8.3e-16  Score=85.27  Aligned_cols=80  Identities=16%  Similarity=0.476  Sum_probs=71.6

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEcc-CCCEEEEecCCCcEEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCS-KQRTLISGGDDGSICM   74 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~-~~~~~~~~~~~~~i~~   74 (84)
                      ++++..+++| ...|.+++|+|++..+++++.|+.+++||+.+...      ...+..++|+| ++..+++++.|+.|++
T Consensus       155 ~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~i  233 (393)
T 1erj_A          155 RKIVMILQGH-EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV  233 (393)
T ss_dssp             TEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEE
T ss_pred             CcEEEEEccC-CCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEE
Confidence            5677788888 99999999999999999999999999999987654      56799999999 8899999999999999


Q ss_pred             EeCCCCee
Q psy16880         75 WNLNSKLC   82 (84)
Q Consensus        75 ~~~~~~~~   82 (84)
                      ||.++++.
T Consensus       234 wd~~~~~~  241 (393)
T 1erj_A          234 WDSETGFL  241 (393)
T ss_dssp             EETTTCCE
T ss_pred             EECCCCcE
Confidence            99987654

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.70  E-value=6.9e-16  Score=84.38  Aligned_cols=78  Identities=15%  Similarity=0.305  Sum_probs=68.9

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecCCCcE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGDDGSI   72 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~i   72 (84)
                      +++..+++| .+.|.+++|+|++..|++++.|+.+++||+.....          ...|.+++|+|++..+++++.|+.|
T Consensus        96 ~~~~~~~~h-~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i  174 (345)
T 3fm0_A           96 ECVTTLEGH-ENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTV  174 (345)
T ss_dssp             EEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCE
T ss_pred             EEEEEccCC-CCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcE
Confidence            356778888 99999999999999999999999999999976532          5679999999999999999999999


Q ss_pred             EEEeCCCCe
Q psy16880         73 CMWNLNSKL   81 (84)
Q Consensus        73 ~~~~~~~~~   81 (84)
                      ++|+.+..+
T Consensus       175 ~~w~~~~~~  183 (345)
T 3fm0_A          175 KLYREEEDD  183 (345)
T ss_dssp             EEEEEETTE
T ss_pred             EEEEecCCC
Confidence            999987653

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.69  E-value=1.2e-15  Score=84.62  Aligned_cols=68  Identities=24%  Similarity=0.620  Sum_probs=62.2

Q ss_pred             CEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880         15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                      .|.+++|+|+++.+++++.|+.+++||+.....       ...|.+++|+|++..+++++.|+.|++||++++++
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~  199 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC  199 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee
Confidence            489999999999999999999999999987654       56799999999999999999999999999988765

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.69  E-value=1e-15  Score=82.24  Aligned_cols=75  Identities=12%  Similarity=0.193  Sum_probs=64.8

Q ss_pred             EEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCC--CC-------CCCEEEEEEcc--CCCEEEEecCCCcEEE
Q psy16880          6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSK--LC-------DSAVRSISFCS--KQRTLISGGDDGSICM   74 (84)
Q Consensus         6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~--~~-------~~~v~~~~~~~--~~~~~~~~~~~~~i~~   74 (84)
                      ..+.+| .+.|.+++|+|+++.|++++.|+.+++||+...  ..       ...|.+++|++  ++..+++++.|++|++
T Consensus         3 ~~~~~h-~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            3 VIANAH-NEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI   81 (297)
T ss_dssp             EECCSC-SSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred             eeccCC-cCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence            456788 999999999999999999999999999998643  11       66899999975  3789999999999999


Q ss_pred             EeCCCCe
Q psy16880         75 WNLNSKL   81 (84)
Q Consensus        75 ~~~~~~~   81 (84)
                      ||+++++
T Consensus        82 Wd~~~~~   88 (297)
T 2pm7_B           82 WKEENGR   88 (297)
T ss_dssp             EEBSSSC
T ss_pred             EEcCCCc
Confidence            9998653

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.69  E-value=8.1e-16  Score=83.52  Aligned_cols=80  Identities=16%  Similarity=0.313  Sum_probs=70.1

Q ss_pred             ceEEEeccCCCcCEEEEEEccC---CCEEEEeCCCCcEEEEeCCCCC-C--------CCCEEEEEEccCCCEEEEecCCC
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSK---QHTLISGGDDGSICMWNLNSKL-C--------DSAVRSISFCSKQRTLISGGDDG   70 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~~~~~~~~d~~~~~-~--------~~~v~~~~~~~~~~~~~~~~~~~   70 (84)
                      +.+..+++| .+.|.+++|+|+   +..|++++.++.+.+||+.... .        ...|.+++|+|++..+++++.|+
T Consensus        30 ~~~~~~~~h-~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg  108 (368)
T 3mmy_A           30 KDIEVTSSP-DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK  108 (368)
T ss_dssp             CCEECSSCC-SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ceeEeccCC-CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCC
Confidence            355667788 999999999998   5999999999999999998622 2        67899999999999999999999


Q ss_pred             cEEEEeCCCCeec
Q psy16880         71 SICMWNLNSKLCD   83 (84)
Q Consensus        71 ~i~~~~~~~~~~~   83 (84)
                      .|++||+++++.+
T Consensus       109 ~v~iwd~~~~~~~  121 (368)
T 3mmy_A          109 TAKMWDLSSNQAI  121 (368)
T ss_dssp             EEEEEETTTTEEE
T ss_pred             cEEEEEcCCCCce
Confidence            9999999887754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.69  E-value=3.9e-16  Score=87.42  Aligned_cols=74  Identities=14%  Similarity=0.336  Sum_probs=63.1

Q ss_pred             EeccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEcc-CCCEEEEecCCCcEEEE
Q psy16880          7 TFVHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCS-KQRTLISGGDDGSICMW   75 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~-~~~~~~~~~~~~~i~~~   75 (84)
                      ....| ...|.+++|+| ++.+|++|+.|+.|.+||+.....         ...|.+++|+| ++..+++++.|++|++|
T Consensus       114 ~~~~~-~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw  192 (435)
T 4e54_B          114 KAAPF-DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ  192 (435)
T ss_dssp             EEEEC-SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred             cCCCC-CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence            33456 78899999999 567999999999999999976543         56899999998 67899999999999999


Q ss_pred             eCCCCe
Q psy16880         76 NLNSKL   81 (84)
Q Consensus        76 ~~~~~~   81 (84)
                      |+++..
T Consensus       193 d~~~~~  198 (435)
T 4e54_B          193 DFKGNI  198 (435)
T ss_dssp             ETTSCE
T ss_pred             eccCCc
Confidence            997654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.68  E-value=1e-15  Score=83.18  Aligned_cols=80  Identities=24%  Similarity=0.420  Sum_probs=71.5

Q ss_pred             CCceEEEeccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecCC
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGDD   69 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~   69 (84)
                      +++++..+.+| ...|.+++|+| ++..+++++.++.+.+||+.....          ...|.+++|+|++..+++++.|
T Consensus       104 ~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  182 (366)
T 3k26_A          104 TMQCIKHYVGH-GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD  182 (366)
T ss_dssp             TCCEEEEEESC-CSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETT
T ss_pred             hceEeeeecCC-CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCC
Confidence            35677888888 99999999999 899999999999999999986543          5689999999999999999999


Q ss_pred             CcEEEEeCCCCe
Q psy16880         70 GSICMWNLNSKL   81 (84)
Q Consensus        70 ~~i~~~~~~~~~   81 (84)
                      +.|++||+++++
T Consensus       183 g~i~i~d~~~~~  194 (366)
T 3k26_A          183 HSLKLWRINSKR  194 (366)
T ss_dssp             SCEEEEESCSHH
T ss_pred             CCEEEEECCCCc
Confidence            999999998764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.68  E-value=1.3e-15  Score=83.09  Aligned_cols=78  Identities=15%  Similarity=0.103  Sum_probs=65.9

Q ss_pred             EEEec-cCCCcCEEEEEEcc--CCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          5 IHTFV-HSNNSAVRSISFCS--KQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         5 ~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      ++.++ +| .+.|.+++|+|  ++..+++++.|+.+.+||+.....        ...+.+++|+|++..+++++.|+.|+
T Consensus       117 ~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~  195 (343)
T 3lrv_A          117 LREIEVDS-ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD  195 (343)
T ss_dssp             EEEEECCC-SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred             eEEeecCC-CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence            44444 34 68899999999  999999999999999999986654        34699999999999999999999999


Q ss_pred             EEeCCCCeec
Q psy16880         74 MWNLNSKLCD   83 (84)
Q Consensus        74 ~~~~~~~~~~   83 (84)
                      +||+++++.+
T Consensus       196 iwd~~~~~~~  205 (343)
T 3lrv_A          196 VYNLSSPDQA  205 (343)
T ss_dssp             EEESSCTTSC
T ss_pred             EEECCCCCCC
Confidence            9999887643

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.68  E-value=2.1e-15  Score=82.29  Aligned_cols=80  Identities=14%  Similarity=0.177  Sum_probs=66.4

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSI   72 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i   72 (84)
                      ++++..+..++...+.+++|+|++.++++|+.++.+++||++....         ...|.+++|+|++..+++++ ++.|
T Consensus       159 ~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v  237 (343)
T 3lrv_A          159 DSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTV  237 (343)
T ss_dssp             SCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBE
T ss_pred             CcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeE
Confidence            4455555444356799999999999999999999999999986653         46799999999999999998 5599


Q ss_pred             EEEeCCCCee
Q psy16880         73 CMWNLNSKLC   82 (84)
Q Consensus        73 ~~~~~~~~~~   82 (84)
                      ++||+++.+.
T Consensus       238 ~iwd~~~~~~  247 (343)
T 3lrv_A          238 VCFDLRKDVG  247 (343)
T ss_dssp             EEEETTSSTT
T ss_pred             EEEEcCCCCc
Confidence            9999987654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.68  E-value=2.5e-16  Score=85.91  Aligned_cols=79  Identities=15%  Similarity=0.262  Sum_probs=67.0

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccC--CCEEEEecCCC
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSK--QRTLISGGDDG   70 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~--~~~~~~~~~~~   70 (84)
                      |+++..+++| .+.|.+++|+|++..|++++.++.+.+||+.....         ...|.+++|+++  +..+++++.|+
T Consensus         1 G~~~~~~~~h-~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg   79 (379)
T 3jrp_A            1 GSMVVIANAH-NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG   79 (379)
T ss_dssp             ----CCEEEC-CCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             CCccEEecCC-cccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence            5677888899 99999999999999999999999999999973322         568999999876  89999999999


Q ss_pred             cEEEEeCCCCe
Q psy16880         71 SICMWNLNSKL   81 (84)
Q Consensus        71 ~i~~~~~~~~~   81 (84)
                      .|++||+.+++
T Consensus        80 ~v~iwd~~~~~   90 (379)
T 3jrp_A           80 KVLIWKEENGR   90 (379)
T ss_dssp             CEEEEEEETTE
T ss_pred             EEEEEEcCCCc
Confidence            99999998765

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.68  E-value=9.5e-17  Score=89.12  Aligned_cols=75  Identities=23%  Similarity=0.374  Sum_probs=64.9

Q ss_pred             EeccCCCcCEEEEEEcc--------CCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCC-CEEEEecCCC
Q psy16880          7 TFVHSNNSAVRSISFCS--------KQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQ-RTLISGGDDG   70 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~--------~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~-~~~~~~~~~~   70 (84)
                      .+++| .+.|.+++|+|        ++++|++++.|+.+++||+.....       ...+.+++|+|++ ..+++++.|+
T Consensus       131 ~~~gH-~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~  209 (393)
T 4gq1_A          131 GKSGH-HNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNG  209 (393)
T ss_dssp             TTTSC-SSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTS
T ss_pred             ccCCC-CCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCC
Confidence            35778 99999999998        788999999999999999976544       6789999999987 4789999999


Q ss_pred             cEEEEeCCCCee
Q psy16880         71 SICMWNLNSKLC   82 (84)
Q Consensus        71 ~i~~~~~~~~~~   82 (84)
                      .|++||+++++.
T Consensus       210 ~v~~wd~~t~~~  221 (393)
T 4gq1_A          210 NIRIFDWTLNLS  221 (393)
T ss_dssp             EEEEEETTCCC-
T ss_pred             EEEEEECCCCcc
Confidence            999999987653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.67  E-value=3.1e-16  Score=87.85  Aligned_cols=80  Identities=14%  Similarity=0.267  Sum_probs=68.0

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecCCC
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQH-TLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGDDG   70 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~   70 (84)
                      ++.+..+++| ...|.+++|+|++. .+++++.|+.+++||++....          ...|.+++|+|++..+++++.|+
T Consensus       240 ~~~~~~~~~h-~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~  318 (435)
T 4e54_B          240 GKELWNLRMH-KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS  318 (435)
T ss_dssp             SCBCCCSBCC-SSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS
T ss_pred             cceeEEEecc-cceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCC
Confidence            3445567778 89999999999875 788999999999999976543          56799999999999999999999


Q ss_pred             cEEEEeCCCCee
Q psy16880         71 SICMWNLNSKLC   82 (84)
Q Consensus        71 ~i~~~~~~~~~~   82 (84)
                      .|++||++++++
T Consensus       319 ~i~iwd~~~~~~  330 (435)
T 4e54_B          319 EIRVYSASQWDC  330 (435)
T ss_dssp             CEEEEESSSSSS
T ss_pred             EEEEEECCCCcc
Confidence            999999987653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.67  E-value=8.5e-16  Score=89.17  Aligned_cols=79  Identities=20%  Similarity=0.305  Sum_probs=68.1

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQH-TLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICM   74 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~   74 (84)
                      +.+..+++| ...|.+++|+|++. .+++++.|+.+++||......       ...|.+++|+|+++.+++++.|+.|++
T Consensus       138 ~~~~~l~gh-~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~l  216 (611)
T 1nr0_A          138 TSNGNLTGQ-ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVL  216 (611)
T ss_dssp             CBCBCCCCC-SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             CCcceecCC-CCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEE
Confidence            344556788 89999999999886 699999999999999876543       568999999999999999999999999


Q ss_pred             EeCCCCee
Q psy16880         75 WNLNSKLC   82 (84)
Q Consensus        75 ~~~~~~~~   82 (84)
                      ||..++++
T Consensus       217 wd~~~g~~  224 (611)
T 1nr0_A          217 YNGVDGTK  224 (611)
T ss_dssp             EETTTCCE
T ss_pred             EECCCCcE
Confidence            99877654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.67  E-value=2.4e-15  Score=82.69  Aligned_cols=80  Identities=14%  Similarity=0.226  Sum_probs=70.6

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCC----C------CCCEEEEEEcc-CCCEEEEecCC
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQH-TLISGGDDGSICMWNLNSKL----C------DSAVRSISFCS-KQRTLISGGDD   69 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~----~------~~~v~~~~~~~-~~~~~~~~~~~   69 (84)
                      ++++..+..| .+.|.+++|+|++. .+++++.++.+++||+....    .      ...|.+++|+| ++..+++++.|
T Consensus       194 ~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d  272 (383)
T 3ei3_B          194 GHEIFKEKLH-KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQR  272 (383)
T ss_dssp             SCEEEEEECS-SSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESS
T ss_pred             CCEEEEeccC-CCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCC
Confidence            5677788888 99999999999998 99999999999999998632    2      67899999999 99999999999


Q ss_pred             CcEEEEeCCCCee
Q psy16880         70 GSICMWNLNSKLC   82 (84)
Q Consensus        70 ~~i~~~~~~~~~~   82 (84)
                      +.|++||+++++.
T Consensus       273 ~~i~iwd~~~~~~  285 (383)
T 3ei3_B          273 NEIRVYSSYDWSK  285 (383)
T ss_dssp             SEEEEEETTBTTS
T ss_pred             CcEEEEECCCCcc
Confidence            9999999987654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.67  E-value=2.8e-15  Score=80.53  Aligned_cols=77  Identities=17%  Similarity=0.358  Sum_probs=66.9

Q ss_pred             ceEEEeccCCCcCEEEEEEcc--CCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccC--CCEEEEecCC
Q psy16880          3 SIIHTFVHSNNSAVRSISFCS--KQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSK--QRTLISGGDD   69 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~--~~~~~~~~~~   69 (84)
                      +++..+++| .+.|.+++|++  ++..|++++.|+.+++||+.....         ...|.+++|+|+  +..+++++.|
T Consensus        44 ~~~~~l~gH-~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d  122 (297)
T 2pm7_B           44 KLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD  122 (297)
T ss_dssp             CCCEEECCC-SSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             EEEEEEccc-cCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC
Confidence            466788899 99999999986  389999999999999999976531         567999999997  7899999999


Q ss_pred             CcEEEEeCCCC
Q psy16880         70 GSICMWNLNSK   80 (84)
Q Consensus        70 ~~i~~~~~~~~   80 (84)
                      +.|++||+++.
T Consensus       123 ~~v~~wd~~~~  133 (297)
T 2pm7_B          123 GKVSVVEFKEN  133 (297)
T ss_dssp             SEEEEEEBCSS
T ss_pred             CcEEEEEecCC
Confidence            99999998764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.66  E-value=1.7e-15  Score=81.51  Aligned_cols=74  Identities=16%  Similarity=0.270  Sum_probs=65.7

Q ss_pred             EEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----------CCCEEEEEEcc--CCCEEEEecCCCcE
Q psy16880          6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----------DSAVRSISFCS--KQRTLISGGDDGSI   72 (84)
Q Consensus         6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----------~~~v~~~~~~~--~~~~~~~~~~~~~i   72 (84)
                      ..+++| .+.|.+++|+|++..|++++.++.+++||+.....           ...|.+++|+|  ++..+++++.|+.|
T Consensus         5 ~~~~gH-~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            5 PFDSGH-DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CEECCC-SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             ccCccc-ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            355778 99999999999999999999999999999986532           67899999999  58999999999999


Q ss_pred             EEEeCCCC
Q psy16880         73 CMWNLNSK   80 (84)
Q Consensus        73 ~~~~~~~~   80 (84)
                      ++||++++
T Consensus        84 ~vwd~~~~   91 (351)
T 3f3f_A           84 KLWEEDPD   91 (351)
T ss_dssp             EEEEECTT
T ss_pred             EEEecCCC
Confidence            99999875

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.66  E-value=3.4e-15  Score=81.10  Aligned_cols=77  Identities=17%  Similarity=0.346  Sum_probs=69.3

Q ss_pred             EEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEE--ccCCCEEEEecCCCcEEEEeC
Q psy16880          6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISF--CSKQRTLISGGDDGSICMWNL   77 (84)
Q Consensus         6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~--~~~~~~~~~~~~~~~i~~~~~   77 (84)
                      ..+.+| .+.|.+++|+|++..+++++.++.+.+||+.....      ...|.+++|  +|++..+++++.|+.|++||+
T Consensus        80 ~~~~~h-~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~  158 (368)
T 3mmy_A           80 KAQQMH-TGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT  158 (368)
T ss_dssp             EEEEEC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred             EEeccc-cCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence            667778 99999999999999999999999999999987765      678999999  889999999999999999999


Q ss_pred             CCCeec
Q psy16880         78 NSKLCD   83 (84)
Q Consensus        78 ~~~~~~   83 (84)
                      ++++++
T Consensus       159 ~~~~~~  164 (368)
T 3mmy_A          159 RSSNPM  164 (368)
T ss_dssp             SCSSCS
T ss_pred             CCCcEE
Confidence            877643

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.66  E-value=1.7e-15  Score=84.46  Aligned_cols=77  Identities=26%  Similarity=0.460  Sum_probs=68.3

Q ss_pred             CCceEEEe-ccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCC---CC---C------CCCEEEEEEccCCCEEEEe
Q psy16880          1 DGSIIHTF-VHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNS---KL---C------DSAVRSISFCSKQRTLISG   66 (84)
Q Consensus         1 ~g~~~~~~-~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~---~~---~------~~~v~~~~~~~~~~~~~~~   66 (84)
                      +|+++..+ ++| .+.|.+++|+| ++.+|++++.|+.+++||+..   ..   .      ...|.+++|+|++..++++
T Consensus        51 ~g~~~~~~~~~h-~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  129 (437)
T 3gre_A           51 RGKLIATLMENE-PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVS  129 (437)
T ss_dssp             CCCEEEEECTTT-TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             cceEEeeeccCC-CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEE
Confidence            36778888 777 99999999999 999999999999999999865   21   1      6789999999999999999


Q ss_pred             cCCCcEEEEeCC
Q psy16880         67 GDDGSICMWNLN   78 (84)
Q Consensus        67 ~~~~~i~~~~~~   78 (84)
                      +.|+.|++||+.
T Consensus       130 s~dg~i~vwd~~  141 (437)
T 3gre_A          130 SKDGQIIVLKVN  141 (437)
T ss_dssp             ETTSEEEEEEEE
T ss_pred             eCCCEEEEEEec
Confidence            999999999984

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.65  E-value=3.4e-15  Score=87.53  Aligned_cols=77  Identities=22%  Similarity=0.428  Sum_probs=68.7

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      ...+.+.+| ...|.+++|+|+++++++++.|+.+++||+.....       ...|.+++|+|++..+++++.|+.|++|
T Consensus       421 ~~~~~~~~h-~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw  499 (694)
T 3dm0_A          421 VAQRRLTGH-SHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW  499 (694)
T ss_dssp             EEEEEEECC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             cccceecCC-CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence            345677888 99999999999999999999999999999987644       6689999999999999999999999999


Q ss_pred             eCCCC
Q psy16880         76 NLNSK   80 (84)
Q Consensus        76 ~~~~~   80 (84)
                      |....
T Consensus       500 d~~~~  504 (694)
T 3dm0_A          500 NTLGE  504 (694)
T ss_dssp             CTTSC
T ss_pred             ECCCC
Confidence            97543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.65  E-value=2.4e-15  Score=88.81  Aligned_cols=80  Identities=24%  Similarity=0.402  Sum_probs=71.9

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      +..+.+++| .+.|.+++|+|++..+++++.++.+.+||+.++..       ...|.+++|+|++..+++++.++.|.+|
T Consensus         4 ~~~~~~~~h-~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw   82 (814)
T 3mkq_A            4 DIKKTFSNR-SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (814)
T ss_dssp             CCEEEEEEE-CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             ccceeeecC-CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            356778888 99999999999999999999999999999987644       6789999999999999999999999999


Q ss_pred             eCCCCeec
Q psy16880         76 NLNSKLCD   83 (84)
Q Consensus        76 ~~~~~~~~   83 (84)
                      ++.+++.+
T Consensus        83 ~~~~~~~~   90 (814)
T 3mkq_A           83 NYNTGEKV   90 (814)
T ss_dssp             ETTTCCEE
T ss_pred             ECCCCcEE
Confidence            99887653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.64  E-value=1e-14  Score=79.35  Aligned_cols=74  Identities=18%  Similarity=0.445  Sum_probs=60.8

Q ss_pred             eEEEe-cc-CCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCC-------C-------CCCEEEEEEccCCCEEEEec
Q psy16880          4 IIHTF-VH-SNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKL-------C-------DSAVRSISFCSKQRTLISGG   67 (84)
Q Consensus         4 ~~~~~-~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~-------~-------~~~v~~~~~~~~~~~~~~~~   67 (84)
                      .+..+ .+ | ...|.+++|+|++.+|++++.|+.+++||+....       .       ...|.+++|+|+++.+++++
T Consensus        48 ~~~~~~~~~h-~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s  126 (330)
T 2hes_X           48 LIDVLDETAH-KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCS  126 (330)
T ss_dssp             EEEEECTTCC-CSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEE
T ss_pred             EEEEEecCCc-cCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEe
Confidence            34445 34 6 8999999999999999999999999999984321       1       56899999999999999999


Q ss_pred             CCCcEEEEeCC
Q psy16880         68 DDGSICMWNLN   78 (84)
Q Consensus        68 ~~~~i~~~~~~   78 (84)
                      .|+.|++||++
T Consensus       127 ~D~~v~iwd~~  137 (330)
T 2hes_X          127 RDKSVWIWETD  137 (330)
T ss_dssp             TTSCEEEEECC
T ss_pred             CCCEEEEEecc
Confidence            99999999984

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.64  E-value=3.6e-15  Score=82.66  Aligned_cols=80  Identities=13%  Similarity=0.232  Sum_probs=70.2

Q ss_pred             ceEEEeccCCCcCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSI   72 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i   72 (84)
                      +++..+.+| ...|.+++|+|++ ..+++++.++.+.+||+.....         ...|.+++|+|++..+++++.|+.|
T Consensus       122 ~~~~~~~~h-~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  200 (402)
T 2aq5_A          122 EPVITLEGH-TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRV  200 (402)
T ss_dssp             SCSEEEECC-SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEE
T ss_pred             CceEEecCC-CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcE
Confidence            456677888 9999999999997 6999999999999999986543         4579999999999999999999999


Q ss_pred             EEEeCCCCeec
Q psy16880         73 CMWNLNSKLCD   83 (84)
Q Consensus        73 ~~~~~~~~~~~   83 (84)
                      ++||+++++.+
T Consensus       201 ~iwd~~~~~~~  211 (402)
T 2aq5_A          201 RVIEPRKGTVV  211 (402)
T ss_dssp             EEEETTTTEEE
T ss_pred             EEEeCCCCcee
Confidence            99999887654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.64  E-value=6.5e-15  Score=78.69  Aligned_cols=79  Identities=18%  Similarity=0.364  Sum_probs=68.5

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      +++++..++.| .+.|.+++|+|++ .+++++.++.+.+||+.....       ...+.+++|+|+++ +++++.|+.|+
T Consensus       214 ~~~~~~~~~~~-~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~  290 (313)
T 3odt_A          214 TGDVLRTYEGH-ESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVR  290 (313)
T ss_dssp             TCCEEEEEECC-SSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEE
T ss_pred             chhhhhhhhcC-CceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEE
Confidence            35678888888 9999999999998 588999999999999987765       56899999999998 66788999999


Q ss_pred             EEeCCCCee
Q psy16880         74 MWNLNSKLC   82 (84)
Q Consensus        74 ~~~~~~~~~   82 (84)
                      +|++++++.
T Consensus       291 iw~~~~~~~  299 (313)
T 3odt_A          291 IFSQEKSRW  299 (313)
T ss_dssp             EEESCGGGC
T ss_pred             EEeCCCCce
Confidence            999987654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.64  E-value=1.1e-15  Score=82.68  Aligned_cols=73  Identities=11%  Similarity=0.172  Sum_probs=59.9

Q ss_pred             EeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEcc--CCCEEEEecCCCcEEEE
Q psy16880          7 TFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCS--KQRTLISGGDDGSICMW   75 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~--~~~~~~~~~~~~~i~~~   75 (84)
                      .+.+| .+.|.+++|+|+++.|++++.|+.+++||+.....         ...|.+++|++  ++..+++++.|++|++|
T Consensus         8 ~~~~H-~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            8 VDTSH-EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             ecccc-cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            34567 99999999999999999999999999999975421         67899999975  47899999999999999


Q ss_pred             eCCCC
Q psy16880         76 NLNSK   80 (84)
Q Consensus        76 ~~~~~   80 (84)
                      |++++
T Consensus        87 d~~~~   91 (316)
T 3bg1_A           87 REENG   91 (316)
T ss_dssp             CCSSS
T ss_pred             ECCCC
Confidence            99875

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.64  E-value=1e-14  Score=78.45  Aligned_cols=78  Identities=15%  Similarity=0.303  Sum_probs=68.2

Q ss_pred             eEEEeccCCCcCEEEEEEcc--CCCEEEEeCCCCcEEEEeCCCCC----------C------CCCEEEEEEccC--CCEE
Q psy16880          4 IIHTFVHSNNSAVRSISFCS--KQHTLISGGDDGSICMWNLNSKL----------C------DSAVRSISFCSK--QRTL   63 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~~~~~d~~~~~----------~------~~~v~~~~~~~~--~~~~   63 (84)
                      ++..+.+| .+.|.+++|+|  ++..|++++.|+.+++||+....          .      ...|.+++|+|+  +..+
T Consensus        49 ~~~~~~~~-~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  127 (351)
T 3f3f_A           49 LSDSWRAH-DSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL  127 (351)
T ss_dssp             EEEEEECC-SSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred             ecceeccC-CCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence            55667778 99999999999  59999999999999999998652          1      568999999999  9999


Q ss_pred             EEecCCCcEEEEeCCCCee
Q psy16880         64 ISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        64 ~~~~~~~~i~~~~~~~~~~   82 (84)
                      ++++.|+.|++||+++++.
T Consensus       128 ~~~~~dg~v~iwd~~~~~~  146 (351)
T 3f3f_A          128 ACLGNDGILRLYDALEPSD  146 (351)
T ss_dssp             EEEETTCEEEEEECSSTTC
T ss_pred             EEecCCCcEEEecCCChHH
Confidence            9999999999999987654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.64  E-value=1.1e-14  Score=80.66  Aligned_cols=76  Identities=18%  Similarity=0.434  Sum_probs=66.8

Q ss_pred             EeccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCC-------C-------CCCEEEEEEccCC-CEEEEecCCC
Q psy16880          7 TFVHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKL-------C-------DSAVRSISFCSKQ-RTLISGGDDG   70 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~-------~-------~~~v~~~~~~~~~-~~~~~~~~~~   70 (84)
                      .+.+| .+.|.+++|+| ++..|++++.|+.+.+||+....       .       ...|.+++|+|++ ..+++++.|+
T Consensus        76 ~~~~h-~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg  154 (402)
T 2aq5_A           76 LVCGH-TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN  154 (402)
T ss_dssp             CBCCC-SSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS
T ss_pred             eEecC-CCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC
Confidence            45567 89999999999 89999999999999999998752       2       6689999999997 6899999999


Q ss_pred             cEEEEeCCCCeec
Q psy16880         71 SICMWNLNSKLCD   83 (84)
Q Consensus        71 ~i~~~~~~~~~~~   83 (84)
                      .|++||+++++++
T Consensus       155 ~i~iwd~~~~~~~  167 (402)
T 2aq5_A          155 VILVWDVGTGAAV  167 (402)
T ss_dssp             CEEEEETTTTEEE
T ss_pred             EEEEEECCCCCcc
Confidence            9999999887654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.63  E-value=1.4e-14  Score=79.65  Aligned_cols=81  Identities=15%  Similarity=0.298  Sum_probs=69.9

Q ss_pred             CceEEEeccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC--------------------CCCEEEEEEcc-C
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC--------------------DSAVRSISFCS-K   59 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~--------------------~~~v~~~~~~~-~   59 (84)
                      ++....+.+| .+.|.+++|+| ++..+++++.++.+.+||+.....                    ...|.+++|+| +
T Consensus        33 ~~~~~~~~~h-~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  111 (408)
T 4a11_B           33 NKDRDVERIH-GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHD  111 (408)
T ss_dssp             CTTEEECCCC-SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTC
T ss_pred             Ccceeeeecc-CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCC
Confidence            3456677788 99999999999 999999999999999999986533                    45799999999 7


Q ss_pred             CCEEEEecCCCcEEEEeCCCCeec
Q psy16880         60 QRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        60 ~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      +..+++++.|+.|++||+.+++.+
T Consensus       112 ~~~l~s~~~d~~i~iwd~~~~~~~  135 (408)
T 4a11_B          112 TGMFTSSSFDKTLKVWDTNTLQTA  135 (408)
T ss_dssp             TTCEEEEETTSEEEEEETTTTEEE
T ss_pred             CcEEEEEeCCCeEEEeeCCCCccc
Confidence            789999999999999999887653

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.63  E-value=1.1e-14  Score=80.12  Aligned_cols=82  Identities=18%  Similarity=0.466  Sum_probs=69.6

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccC-CCEEEEecCC
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQH-TLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSK-QRTLISGGDD   69 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~-~~~~~~~~~~   69 (84)
                      +++++..+++| .+.|.+++|++++. .+++++.|+.+++||++....         ...+.+++|+|+ +.++++++.|
T Consensus       170 ~~~~~~~~~~h-~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d  248 (357)
T 4g56_B          170 QKAVLKSYNAH-SSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDET  248 (357)
T ss_dssp             TTEEEEEECCC-SSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESS
T ss_pred             CCcEEEEEcCC-CCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecc
Confidence            36778888898 99999999999874 788999999999999987654         456899999997 4678899999


Q ss_pred             CcEEEEeCCCCeec
Q psy16880         70 GSICMWNLNSKLCD   83 (84)
Q Consensus        70 ~~i~~~~~~~~~~~   83 (84)
                      +.|++||+++++++
T Consensus       249 ~~i~~wd~~~~~~~  262 (357)
T 4g56_B          249 GNVSLVNIKNPDSA  262 (357)
T ss_dssp             SCEEEEESSCGGGC
T ss_pred             cceeEEECCCCcEe
Confidence            99999999877643

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.63  E-value=9.3e-15  Score=79.13  Aligned_cols=74  Identities=18%  Similarity=0.389  Sum_probs=64.8

Q ss_pred             eEEEeccCCCcCEEEEEEccCC----CEEEEeCCCCcEEEEeCCCCC-------C----CCCEEEEEEccCCCEEEEecC
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQ----HTLISGGDDGSICMWNLNSKL-------C----DSAVRSISFCSKQRTLISGGD   68 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~~~~~~~~d~~~~~-------~----~~~v~~~~~~~~~~~~~~~~~   68 (84)
                      ++..+++| .+.|.+++|+|++    ..|++++.|+.+++||+....       .    ...|.+++|+|++..+++++.
T Consensus       204 ~~~~l~~h-~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~  282 (316)
T 3bg1_A          204 EEQKLEAH-SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGG  282 (316)
T ss_dssp             EEECCBCC-SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEES
T ss_pred             eeeecccC-CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcC
Confidence            56677888 9999999999986    789999999999999987521       1    568999999999999999999


Q ss_pred             CCcEEEEeCC
Q psy16880         69 DGSICMWNLN   78 (84)
Q Consensus        69 ~~~i~~~~~~   78 (84)
                      |+.|++|+..
T Consensus       283 D~~v~lw~~~  292 (316)
T 3bg1_A          283 DNKVTLWKES  292 (316)
T ss_dssp             SSCEEEEEEC
T ss_pred             CCeEEEEEEC
Confidence            9999999975

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.62  E-value=2.8e-14  Score=78.44  Aligned_cols=80  Identities=19%  Similarity=0.403  Sum_probs=69.3

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC-----------------------CCCEEEEEEc
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQH-TLISGGDDGSICMWNLNSKLC-----------------------DSAVRSISFC   57 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~-----------------------~~~v~~~~~~   57 (84)
                      ++.+..+..| .+.|.+++|+|++. .+++++.++.+.+||++....                       ...|.+++|+
T Consensus       176 ~~~~~~~~~~-~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  254 (408)
T 4a11_B          176 GSCSHILQGH-RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT  254 (408)
T ss_dssp             SCCCEEECCC-CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred             cceeeeecCC-CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence            4566777788 89999999999988 689999999999999975531                       5679999999


Q ss_pred             cCCCEEEEecCCCcEEEEeCCCCee
Q psy16880         58 SKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        58 ~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                      |++..+++++.|+.+++||+++++.
T Consensus       255 ~~~~~l~~~~~dg~i~vwd~~~~~~  279 (408)
T 4a11_B          255 SDGLHLLTVGTDNRMRLWNSSNGEN  279 (408)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCB
T ss_pred             CCCCEEEEecCCCeEEEEECCCCcc
Confidence            9999999999999999999987654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.62  E-value=1.4e-14  Score=79.66  Aligned_cols=78  Identities=15%  Similarity=0.333  Sum_probs=68.6

Q ss_pred             ceEEEeccCCCcCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEcc-CCCEEEEecCCCc
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCS-KQRTLISGGDDGS   71 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~-~~~~~~~~~~~~~   71 (84)
                      ++...+.+| .+.|.+++|+|++ ..+++++.++.+.+||+.....         ...|.+++|+| ++..+++++.|+.
T Consensus        64 ~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~  142 (383)
T 3ei3_B           64 KLHRTASPF-DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA  142 (383)
T ss_dssp             EEEEEECCC-SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred             ceEEeccCC-CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence            456778888 9999999999998 9999999999999999986544         56899999999 6789999999999


Q ss_pred             EEEEeCCCCe
Q psy16880         72 ICMWNLNSKL   81 (84)
Q Consensus        72 i~~~~~~~~~   81 (84)
                      |++||+++..
T Consensus       143 i~iwd~~~~~  152 (383)
T 3ei3_B          143 TTLRDFSGSV  152 (383)
T ss_dssp             EEEEETTSCE
T ss_pred             EEEEECCCCc
Confidence            9999998643

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.62  E-value=1.3e-14  Score=77.49  Aligned_cols=76  Identities=20%  Similarity=0.324  Sum_probs=68.7

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      ++++.+++| .+.|.+++| +++..+++++.++.+.+||+.....       ...|.+++|+|++..+++++.++.+++|
T Consensus         9 ~~~~~l~~h-~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~   86 (313)
T 3odt_A            9 QLSATLKGH-DQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV   86 (313)
T ss_dssp             EEEEEECCC-SSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             HHHHHhhCC-CCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence            567889999 999999999 9999999999999999999976644       6789999999999999999999999999


Q ss_pred             eCCCC
Q psy16880         76 NLNSK   80 (84)
Q Consensus        76 ~~~~~   80 (84)
                      ++...
T Consensus        87 ~~~~~   91 (313)
T 3odt_A           87 PLFAT   91 (313)
T ss_dssp             ETTCC
T ss_pred             Eeeec
Confidence            98653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.62  E-value=1e-14  Score=89.30  Aligned_cols=77  Identities=14%  Similarity=0.220  Sum_probs=69.5

Q ss_pred             EEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCC
Q psy16880          6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLN   78 (84)
Q Consensus         6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~   78 (84)
                      ..+.+| .+.|.+++|+|+++.+++++.++.+.+||..+...       ...|.+++|+|++..+++++.|+.|++||+.
T Consensus       609 ~~~~~h-~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~  687 (1249)
T 3sfz_A          609 LVVRPH-TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA  687 (1249)
T ss_dssp             EEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EEEecc-cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence            356678 99999999999999999999999999999987655       6789999999999999999999999999998


Q ss_pred             CCeec
Q psy16880         79 SKLCD   83 (84)
Q Consensus        79 ~~~~~   83 (84)
                      +++++
T Consensus       688 ~~~~~  692 (1249)
T 3sfz_A          688 TGKLV  692 (1249)
T ss_dssp             TCCEE
T ss_pred             CCceE
Confidence            87654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.62  E-value=2.8e-14  Score=76.44  Aligned_cols=80  Identities=18%  Similarity=0.429  Sum_probs=67.5

Q ss_pred             CCceEEEec--cCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------------------------------
Q psy16880          1 DGSIIHTFV--HSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------------------------------   47 (84)
Q Consensus         1 ~g~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------------------------------   47 (84)
                      +|++++.++  +| ...|.+++|+|+++.+++|+.|+.+++||+.+...                               
T Consensus        54 tg~~~~~~~~~~~-~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~  132 (318)
T 4ggc_A           54 SGDILQLLQMEQP-GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIH  132 (318)
T ss_dssp             TCCEEEEEECCST-TCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEE
T ss_pred             CCCEEEEEEecCC-CCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceE
Confidence            467777664  45 67899999999999999999999999999986543                               


Q ss_pred             -----------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880         48 -----------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        48 -----------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (84)
                                       ...+..+.+.+++..+++++.|+.|++||+++++
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  183 (318)
T 4ggc_A          133 HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE  183 (318)
T ss_dssp             EEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred             eeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence                             4567888899999999999999999999998654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.62  E-value=1.4e-15  Score=83.36  Aligned_cols=78  Identities=10%  Similarity=0.228  Sum_probs=62.1

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCC---C-------CCCEEEEEEccCCCEEEEecCCCcE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKL---C-------DSAVRSISFCSKQRTLISGGDDGSI   72 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~---~-------~~~v~~~~~~~~~~~~~~~~~~~~i   72 (84)
                      +++..+++| .+.|.+++|+|++..|++++.|+.+++||+....   .       ...|.+++|+|++..+++++.|+.|
T Consensus        46 ~~~~~~~~h-~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  124 (377)
T 3dwl_C           46 KHARTFSDH-DKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVI  124 (377)
T ss_dssp             EECCCBCCC-SSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCE
T ss_pred             EEEEEEecC-CceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeE
Confidence            455667788 9999999999999999999999999999998765   2       6789999999999999999999999


Q ss_pred             EEEeCCCCe
Q psy16880         73 CMWNLNSKL   81 (84)
Q Consensus        73 ~~~~~~~~~   81 (84)
                      ++||+++++
T Consensus       125 ~iwd~~~~~  133 (377)
T 3dwl_C          125 SVCYFEQEN  133 (377)
T ss_dssp             EECCC----
T ss_pred             EEEEECCcc
Confidence            999998764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.61  E-value=2e-14  Score=84.30  Aligned_cols=78  Identities=22%  Similarity=0.363  Sum_probs=67.5

Q ss_pred             EEEeccCCCcCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC------------CCCEEEEEEccCCCEEEEecCCCc
Q psy16880          5 IHTFVHSNNSAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC------------DSAVRSISFCSKQRTLISGGDDGS   71 (84)
Q Consensus         5 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~   71 (84)
                      ...+++| .+.|.+++|+|++ ..|++++.|+.+++||+.....            ...|.+++|+|+++.+++++.|+.
T Consensus       375 ~~~l~~H-~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~  453 (694)
T 3dm0_A          375 KGTMRAH-TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE  453 (694)
T ss_dssp             EEEEECC-SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             hhhcccC-CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence            4567888 9999999999864 7999999999999999875321            567999999999999999999999


Q ss_pred             EEEEeCCCCeec
Q psy16880         72 ICMWNLNSKLCD   83 (84)
Q Consensus        72 i~~~~~~~~~~~   83 (84)
                      |++||+.+++++
T Consensus       454 v~vwd~~~~~~~  465 (694)
T 3dm0_A          454 LRLWDLAAGVST  465 (694)
T ss_dssp             EEEEETTTTEEE
T ss_pred             EEEEECCCCcce
Confidence            999999887653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.61  E-value=4.3e-14  Score=76.09  Aligned_cols=80  Identities=18%  Similarity=0.347  Sum_probs=71.6

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      ++.+..++.| .+.|.+++|+|++..+++++.++.+.+||+.....      ...+.+++|+|++..+++++.++.+.+|
T Consensus       173 ~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~  251 (337)
T 1gxr_A          173 QTLVRQFQGH-TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVL  251 (337)
T ss_dssp             TEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             Cceeeeeecc-cCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEE
Confidence            5667788888 89999999999999999999999999999987655      6789999999999999999999999999


Q ss_pred             eCCCCee
Q psy16880         76 NLNSKLC   82 (84)
Q Consensus        76 ~~~~~~~   82 (84)
                      ++++.+.
T Consensus       252 ~~~~~~~  258 (337)
T 1gxr_A          252 HVNKPDK  258 (337)
T ss_dssp             ETTSSCE
T ss_pred             ECCCCCe
Confidence            9987653

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.61  E-value=2.8e-15  Score=83.59  Aligned_cols=81  Identities=19%  Similarity=0.423  Sum_probs=68.6

Q ss_pred             CceEEEecc--CCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEcc----CCCEEEEec
Q psy16880          2 GSIIHTFVH--SNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCS----KQRTLISGG   67 (84)
Q Consensus         2 g~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~----~~~~~~~~~   67 (84)
                      ++++..++.  | .+.|.+++|+|++..+++++.++.+++||++....        ...|.+++|+|    ++..+++++
T Consensus       202 ~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~  280 (437)
T 3gre_A          202 LERLQIIENSPR-HGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGS  280 (437)
T ss_dssp             CCEEEEEECCGG-GCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEES
T ss_pred             CeeeEEEccCCC-CCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEc
Confidence            567777777  6 89999999999999999999999999999987544        34688996664    567899999


Q ss_pred             CCCcEEEEeCCCCeec
Q psy16880         68 DDGSICMWNLNSKLCD   83 (84)
Q Consensus        68 ~~~~i~~~~~~~~~~~   83 (84)
                      .|+.|++||+++++++
T Consensus       281 ~dg~i~iwd~~~~~~~  296 (437)
T 3gre_A          281 SKTFLTIWNFVKGHCQ  296 (437)
T ss_dssp             TTEEEEEEETTTTEEE
T ss_pred             CCCcEEEEEcCCCcEE
Confidence            9999999999987753

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.61  E-value=1.9e-14  Score=79.17  Aligned_cols=79  Identities=28%  Similarity=0.330  Sum_probs=67.5

Q ss_pred             CceEEEecc-------------CCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----C----------------
Q psy16880          2 GSIIHTFVH-------------SNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----D----------------   48 (84)
Q Consensus         2 g~~~~~~~~-------------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----~----------------   48 (84)
                      ++++..+..             | ...|.+++|+|++..|++++.++.+.+||+.....    .                
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~  346 (397)
T 1sq9_A          268 GERIGSLSVPTHSSQASLGEFAH-SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVD  346 (397)
T ss_dssp             CCEEEEECBC--------CCBSB-SSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBC
T ss_pred             CcccceeccCccccccccccccc-CCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccc
Confidence            456677777             7 89999999999999999999999999999976543    2                


Q ss_pred             --------CCEEEEEEccCC----------CEEEEecCCCcEEEEeCCCCe
Q psy16880         49 --------SAVRSISFCSKQ----------RTLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        49 --------~~v~~~~~~~~~----------~~~~~~~~~~~i~~~~~~~~~   81 (84)
                              ..|.+++|+|++          ..+++++.|+.|++|++.+++
T Consensus       347 ~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          347 EHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             TTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             cccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence                    359999999998          799999999999999998764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.61  E-value=7.6e-15  Score=82.73  Aligned_cols=73  Identities=16%  Similarity=0.267  Sum_probs=64.5

Q ss_pred             EEEeccCCCcCEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880          5 IHTFVHSNNSAVRSISFCSK-QHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus         5 ~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      +..+.+| .+.|.+++|+|+ +..+++++.|+.+++||++....       ...+.+++|+|++..+++++.|+.|++||
T Consensus       142 ~~~~~~h-~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd  220 (434)
T 2oit_A          142 HKLLKDA-GGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYL  220 (434)
T ss_dssp             EECCCSG-GGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             eeccCCC-CCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEc
Confidence            3455667 899999999997 78999999999999999987633       45799999999999999999999999999


Q ss_pred             CC
Q psy16880         77 LN   78 (84)
Q Consensus        77 ~~   78 (84)
                      .+
T Consensus       221 ~~  222 (434)
T 2oit_A          221 PT  222 (434)
T ss_dssp             TT
T ss_pred             cC
Confidence            87

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.61  E-value=1.5e-14  Score=85.44  Aligned_cols=79  Identities=24%  Similarity=0.407  Sum_probs=71.5

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      +|+.+..+.+| .+.|.+++|+|++..+++++.++.+.+||+.+...       ...|.+++|+|+++.+++++.|+.|+
T Consensus        44 ~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  122 (814)
T 3mkq_A           44 TQVEVRSIQVT-ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK  122 (814)
T ss_dssp             TTEEEEEEECC-SSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             CCceEEEEecC-CCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEE
Confidence            35677888888 99999999999999999999999999999987655       66899999999999999999999999


Q ss_pred             EEeCCCC
Q psy16880         74 MWNLNSK   80 (84)
Q Consensus        74 ~~~~~~~   80 (84)
                      +|++.++
T Consensus       123 vw~~~~~  129 (814)
T 3mkq_A          123 LWNWENN  129 (814)
T ss_dssp             EEEGGGT
T ss_pred             EEECCCC
Confidence            9998765

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.60  E-value=2e-14  Score=78.44  Aligned_cols=77  Identities=17%  Similarity=0.359  Sum_probs=68.5

Q ss_pred             ceEEEeccCCCcCEEEEEEccC--CCEEEEeCCCCcEEEEeCCCCC--C-------CCCEEEEEEccC--CCEEEEecCC
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSK--QHTLISGGDDGSICMWNLNSKL--C-------DSAVRSISFCSK--QRTLISGGDD   69 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~~~~~d~~~~~--~-------~~~v~~~~~~~~--~~~~~~~~~~   69 (84)
                      +.+..+.+| .+.|.+++|+++  +..|++++.|+.+.+||+....  .       ...|.+++|+|+  +..+++++.|
T Consensus        46 ~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  124 (379)
T 3jrp_A           46 KLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD  124 (379)
T ss_dssp             EEEEEECCC-SSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             eeeeEecCC-CCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC
Confidence            456677888 999999999976  8999999999999999998764  2       568999999999  8999999999


Q ss_pred             CcEEEEeCCCC
Q psy16880         70 GSICMWNLNSK   80 (84)
Q Consensus        70 ~~i~~~~~~~~   80 (84)
                      +.|++||+++.
T Consensus       125 ~~i~v~d~~~~  135 (379)
T 3jrp_A          125 GKVSVVEFKEN  135 (379)
T ss_dssp             SEEEEEECCTT
T ss_pred             CcEEEEecCCC
Confidence            99999999876

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.60  E-value=8e-14  Score=75.02  Aligned_cols=79  Identities=20%  Similarity=0.374  Sum_probs=69.6

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      ....+..| ...|.+++|+|++..+++++.++.+.+||+.....       ...+.+++|+|++..+++++.++.+++||
T Consensus       133 ~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d  211 (337)
T 1gxr_A          133 IKAELTSS-APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD  211 (337)
T ss_dssp             EEEEEECS-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             eeeecccC-CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEE
Confidence            45566677 88899999999999999999999999999987654       56899999999999999999999999999


Q ss_pred             CCCCeec
Q psy16880         77 LNSKLCD   83 (84)
Q Consensus        77 ~~~~~~~   83 (84)
                      +++++.+
T Consensus       212 ~~~~~~~  218 (337)
T 1gxr_A          212 LREGRQL  218 (337)
T ss_dssp             TTTTEEE
T ss_pred             CCCCceE
Confidence            9887653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.60  E-value=2.3e-14  Score=78.18  Aligned_cols=77  Identities=14%  Similarity=0.415  Sum_probs=68.8

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSICM   74 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i~~   74 (84)
                      .+..+.+| ...|.+++|+|++..+++++.++.+.+||+.....         ...+.+++|+|++..+++++.++.+++
T Consensus        44 ~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i  122 (372)
T 1k8k_C           44 QVHELKEH-NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI  122 (372)
T ss_dssp             EEEEEECC-SSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEE
T ss_pred             eeeeecCC-CCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEE
Confidence            67778888 99999999999999999999999999999976542         568999999999999999999999999


Q ss_pred             EeCCCCe
Q psy16880         75 WNLNSKL   81 (84)
Q Consensus        75 ~~~~~~~   81 (84)
                      ||++..+
T Consensus       123 ~d~~~~~  129 (372)
T 1k8k_C          123 CYFEQEN  129 (372)
T ss_dssp             EEEETTT
T ss_pred             EEecCCC
Confidence            9987653

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.59  E-value=3.7e-14  Score=77.04  Aligned_cols=79  Identities=20%  Similarity=0.389  Sum_probs=71.0

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCC-----
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDD-----   69 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~-----   69 (84)
                      +++.+..+.+| .+.|.+++|+|++..+++++.++.+.+||+.....      ...+.+++|+|++..+++++.+     
T Consensus        63 ~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~  141 (369)
T 3zwl_B           63 NGERLGTLDGH-TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNP  141 (369)
T ss_dssp             TCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBC
T ss_pred             Cchhhhhhhhc-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCC
Confidence            36778888888 99999999999999999999999999999987665      6789999999999999999888     


Q ss_pred             CcEEEEeCCCC
Q psy16880         70 GSICMWNLNSK   80 (84)
Q Consensus        70 ~~i~~~~~~~~   80 (84)
                      +.+.+|++...
T Consensus       142 g~i~~~d~~~~  152 (369)
T 3zwl_B          142 GSINIYEIERD  152 (369)
T ss_dssp             CEEEEEEEEEC
T ss_pred             CEEEEEEecCC
Confidence            99999998654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.59  E-value=4.3e-14  Score=78.88  Aligned_cols=78  Identities=22%  Similarity=0.326  Sum_probs=64.2

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEe--CCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISG--GDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSI   72 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i   72 (84)
                      |+++..+..  ...+.++.|++++..++++  ..++.+.+||+.+...       ...|.+++|+|++..+++++.|++|
T Consensus       311 ~~~~~~~~~--~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tv  388 (420)
T 4gga_A          311 GACLSAVDA--HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETL  388 (420)
T ss_dssp             TEEEEEEEC--SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEE
T ss_pred             cccceeecc--ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeE
Confidence            455555554  4678899999999887765  4789999999987665       5689999999999999999999999


Q ss_pred             EEEeCCCCe
Q psy16880         73 CMWNLNSKL   81 (84)
Q Consensus        73 ~~~~~~~~~   81 (84)
                      ++||+....
T Consensus       389 riWdv~~~~  397 (420)
T 4gga_A          389 RLWRCFELD  397 (420)
T ss_dssp             EEECCSCSS
T ss_pred             EEEECCCCC
Confidence            999986543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.59  E-value=2.6e-14  Score=82.04  Aligned_cols=76  Identities=18%  Similarity=0.329  Sum_probs=67.1

Q ss_pred             CceEEEecc-CCCcCEEEEEEcc----------CCCEEEEeCCCCcEEEEeCCCC-CC-------CCCEEEEEEccCCCE
Q psy16880          2 GSIIHTFVH-SNNSAVRSISFCS----------KQHTLISGGDDGSICMWNLNSK-LC-------DSAVRSISFCSKQRT   62 (84)
Q Consensus         2 g~~~~~~~~-~~~~~v~~~~~~~----------~~~~l~~~~~~~~~~~~d~~~~-~~-------~~~v~~~~~~~~~~~   62 (84)
                      ++++..+.+ | ...|.+++|+|          ++.+|++++.|+.+++||+... ..       ...|.+++|+|+++ 
T Consensus       520 ~~~~~~~~~~h-~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-  597 (615)
T 1pgu_A          520 REVKTSRWAFR-TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-  597 (615)
T ss_dssp             TEEEECCSCCC-SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-
T ss_pred             CcceeEeecCC-CCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-
Confidence            566677777 7 89999999999          9999999999999999999876 33       57899999999999 


Q ss_pred             EEEecCCCcEEEEeCCC
Q psy16880         63 LISGGDDGSICMWNLNS   79 (84)
Q Consensus        63 ~~~~~~~~~i~~~~~~~   79 (84)
                      +++++.|+.|++|++..
T Consensus       598 l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          598 LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             EEEEETTSCEEEEEEC-
T ss_pred             eEEecCCceEEEEeeec
Confidence            99999999999999864

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.59  E-value=4.6e-14  Score=77.88  Aligned_cols=36  Identities=17%  Similarity=0.163  Sum_probs=32.6

Q ss_pred             CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         48 DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        48 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      ...|.+++|+|+++++++++.|+.|++||+++++++
T Consensus       269 ~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~  304 (365)
T 4h5i_A          269 FKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMS  304 (365)
T ss_dssp             CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE
T ss_pred             CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEE
Confidence            356899999999999999999999999999988764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.59  E-value=3.4e-14  Score=77.17  Aligned_cols=71  Identities=18%  Similarity=0.355  Sum_probs=63.4

Q ss_pred             CcCEEEEEEccC----CCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEcc-CCCEEEEecCCCcEEEEeCCCC
Q psy16880         13 NSAVRSISFCSK----QHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCS-KQRTLISGGDDGSICMWNLNSK   80 (84)
Q Consensus        13 ~~~v~~~~~~~~----~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~   80 (84)
                      ...|.+++|+|+    +.++++++.++.+.+||+.+...       ...|.+++|+| ++..+++++.|+.|++||++++
T Consensus        69 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  148 (366)
T 3k26_A           69 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD  148 (366)
T ss_dssp             TCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT
T ss_pred             CCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC
Confidence            577999999998    66999999999999999987655       67899999999 8999999999999999999887


Q ss_pred             eec
Q psy16880         81 LCD   83 (84)
Q Consensus        81 ~~~   83 (84)
                      +.+
T Consensus       149 ~~~  151 (366)
T 3k26_A          149 TLV  151 (366)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.59  E-value=6e-14  Score=86.02  Aligned_cols=82  Identities=20%  Similarity=0.377  Sum_probs=72.6

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEcc--CCCEEEEecCCCc
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCS--KQRTLISGGDDGS   71 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~--~~~~~~~~~~~~~   71 (84)
                      +++.+..+.+| .+.|.+++|+|++..+++++.++.+.+||+.++..       ...|.+++|+|  +...+++++.|+.
T Consensus       646 ~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~  724 (1249)
T 3sfz_A          646 TGEKLLDIKAH-EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF  724 (1249)
T ss_dssp             TCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSC
T ss_pred             CCCEEEEeccC-CCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCe
Confidence            46778888888 99999999999999999999999999999987765       67899999999  5568899999999


Q ss_pred             EEEEeCCCCeec
Q psy16880         72 ICMWNLNSKLCD   83 (84)
Q Consensus        72 i~~~~~~~~~~~   83 (84)
                      |++||+++++++
T Consensus       725 v~vwd~~~~~~~  736 (1249)
T 3sfz_A          725 LKLWDLNQKECR  736 (1249)
T ss_dssp             EEEEETTSSSEE
T ss_pred             EEEEECCCcchh
Confidence            999999887653

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.59  E-value=7.4e-14  Score=80.19  Aligned_cols=81  Identities=17%  Similarity=0.244  Sum_probs=71.3

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC-------CC---CEEEEEEccC-CCEEEEecCC
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQH-TLISGGDDGSICMWNLNSKLC-------DS---AVRSISFCSK-QRTLISGGDD   69 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~-------~~---~v~~~~~~~~-~~~~~~~~~~   69 (84)
                      ++.+..+.+| ...|.+++|+|++. .+++++.++.+.+||......       ..   .|.+++|+|+ +..+++++.+
T Consensus       150 ~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  228 (615)
T 1pgu_A          150 GNSLGEVSGH-SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD  228 (615)
T ss_dssp             CCEEEECCSC-SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred             CCcceeeecC-CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCC
Confidence            4567788888 99999999999987 899999999999999876654       44   7999999999 9999999999


Q ss_pred             CcEEEEeCCCCeec
Q psy16880         70 GSICMWNLNSKLCD   83 (84)
Q Consensus        70 ~~i~~~~~~~~~~~   83 (84)
                      +.|++||+++++.+
T Consensus       229 g~i~vwd~~~~~~~  242 (615)
T 1pgu_A          229 RKISCFDGKSGEFL  242 (615)
T ss_dssp             CCEEEEETTTCCEE
T ss_pred             CeEEEEECCCCCEe
Confidence            99999999877653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.58  E-value=2.4e-14  Score=77.41  Aligned_cols=75  Identities=15%  Similarity=0.213  Sum_probs=66.3

Q ss_pred             EEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCC----C------CCCEEEEEEccCCC-EEEEecCCCcEEE
Q psy16880          6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKL----C------DSAVRSISFCSKQR-TLISGGDDGSICM   74 (84)
Q Consensus         6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~----~------~~~v~~~~~~~~~~-~~~~~~~~~~i~~   74 (84)
                      ...+.| .+.|.+++|+|++..+++++.++.+.+||+....    .      ...|.+++|+|++. .+++++.++.|++
T Consensus         5 ~~~~~h-~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            5 QIEQAP-KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             ECSSCC-SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             ecccCC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            334566 8999999999999999999999999999998766    2      67899999999999 9999999999999


Q ss_pred             EeC-CCCe
Q psy16880         75 WNL-NSKL   81 (84)
Q Consensus        75 ~~~-~~~~   81 (84)
                      |++ .+++
T Consensus        84 wd~~~~~~   91 (342)
T 1yfq_A           84 VDLIGSPS   91 (342)
T ss_dssp             ECSSSSSS
T ss_pred             EEeccCCc
Confidence            999 7654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.58  E-value=1.6e-14  Score=81.24  Aligned_cols=75  Identities=19%  Similarity=0.254  Sum_probs=66.6

Q ss_pred             EeccCCCcCEEEEEEccC---CCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          7 TFVHSNNSAVRSISFCSK---QHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~~---~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      .+.+| .+.|.+++|+|+   +..+++++.++.+++||+.....        ...|.+++|+ ++..+++++.|+.|++|
T Consensus       190 ~~~~h-~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vw  267 (450)
T 2vdu_B          190 PILGH-VSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAW  267 (450)
T ss_dssp             CSEEC-SSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEE
T ss_pred             eeecc-cCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEE
Confidence            45567 889999999999   89999999999999999986654        5689999999 99999999999999999


Q ss_pred             eCCCCeec
Q psy16880         76 NLNSKLCD   83 (84)
Q Consensus        76 ~~~~~~~~   83 (84)
                      |+++++++
T Consensus       268 d~~~~~~~  275 (450)
T 2vdu_B          268 DWKTGKNL  275 (450)
T ss_dssp             ETTTCCEE
T ss_pred             ECCCCcEe
Confidence            99987754

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.57  E-value=9.4e-14  Score=77.99  Aligned_cols=79  Identities=18%  Similarity=0.530  Sum_probs=69.3

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEc--cCCCEEEEecCCCc
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFC--SKQRTLISGGDDGS   71 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~--~~~~~~~~~~~~~~   71 (84)
                      +++++..+.+| .+.|.+++|++++ .+++++.|+.+.+||+.+...       ...|.+++|+  +++..+++++.|+.
T Consensus       151 ~~~~~~~~~~h-~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~  228 (464)
T 3v7d_B          151 NKKFLLQLSGH-DGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT  228 (464)
T ss_dssp             TTEEEEEECCC-SSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSC
T ss_pred             CCcEEEEEeCC-CcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCc
Confidence            36778888888 9999999999877 999999999999999987654       6789999998  56788999999999


Q ss_pred             EEEEeCCCCe
Q psy16880         72 ICMWNLNSKL   81 (84)
Q Consensus        72 i~~~~~~~~~   81 (84)
                      +++||+++..
T Consensus       229 i~vwd~~~~~  238 (464)
T 3v7d_B          229 LHVWKLPKES  238 (464)
T ss_dssp             EEEEECCCCC
T ss_pred             EEEeeCCCCc
Confidence            9999998764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.57  E-value=1.1e-13  Score=76.42  Aligned_cols=79  Identities=20%  Similarity=0.417  Sum_probs=69.3

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      +++..+..| ...|.+++|+|++..+++++.++.+.+||+.....       ...+.+++|+|++ .+++++.++.|++|
T Consensus       238 ~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~  315 (425)
T 1r5m_A          238 TPTGKLIGH-HGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLW  315 (425)
T ss_dssp             SCSEEECCC-SSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEE
T ss_pred             ceeeeeccC-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEE
Confidence            445567777 89999999999999999999999999999987654       5689999999999 89999999999999


Q ss_pred             eCCCCeec
Q psy16880         76 NLNSKLCD   83 (84)
Q Consensus        76 ~~~~~~~~   83 (84)
                      |+++++.+
T Consensus       316 d~~~~~~~  323 (425)
T 1r5m_A          316 SLKQNTLL  323 (425)
T ss_dssp             ETTTTEEE
T ss_pred             ECCCCcEe
Confidence            99887654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.57  E-value=7.5e-14  Score=77.35  Aligned_cols=80  Identities=24%  Similarity=0.390  Sum_probs=66.6

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------CCCE--------------------
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DSAV--------------------   51 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v--------------------   51 (84)
                      ++.+..+.+| .+.|.+++|+|++..+++++.++.+++||+.....          ...+                    
T Consensus       171 ~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  249 (420)
T 3vl1_A          171 GSNPRTLIGH-RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK  249 (420)
T ss_dssp             CCCCEEEECC-SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred             CcCceEEcCC-CCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence            4566778888 99999999999999999999999999999986644          2233                    


Q ss_pred             -EEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880         52 -RSISFCSKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        52 -~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                       .+++|+|++..+++++.++.|++||+++++.
T Consensus       250 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~  281 (420)
T 3vl1_A          250 KNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ  281 (420)
T ss_dssp             CCTTCSSCTTEEEEEEETTSCEEEEETTTCCE
T ss_pred             ccceEEcCCCCEEEEEcCCCeEEEEECCCCce
Confidence             4455578889999999999999999987664

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.57  E-value=1.1e-13  Score=74.10  Aligned_cols=69  Identities=23%  Similarity=0.339  Sum_probs=59.9

Q ss_pred             CcCEEEEEEccCCCEEEEe--CCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880         13 NSAVRSISFCSKQHTLISG--GDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~--~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (84)
                      ...+..+.|.+.+..++++  +.++.+.+||+.+...       ...|.+++|+|+++.+++++.|+.|++||+.+..
T Consensus       240 ~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          240 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            5678899999988877654  5799999999987765       6789999999999999999999999999997654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.57  E-value=1.8e-14  Score=79.65  Aligned_cols=77  Identities=19%  Similarity=0.339  Sum_probs=67.1

Q ss_pred             eEEEec-cCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCC-CEEEEecCCCcEE
Q psy16880          4 IIHTFV-HSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQ-RTLISGGDDGSIC   73 (84)
Q Consensus         4 ~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~-~~~~~~~~~~~i~   73 (84)
                      ++..+. +| ...|.+++|+| ++.++++++.++.+.+||+.....       ...|.+++|+|++ ..+++++.|+.|+
T Consensus       253 ~~~~~~~~~-~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~  331 (416)
T 2pm9_A          253 PLQTLNQGH-QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIE  331 (416)
T ss_dssp             CSBCCCSCC-SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEE
T ss_pred             CcEEeecCc-cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEE
Confidence            444555 67 88999999999 899999999999999999987655       5679999999998 8999999999999


Q ss_pred             EEeCCCCe
Q psy16880         74 MWNLNSKL   81 (84)
Q Consensus        74 ~~~~~~~~   81 (84)
                      +|++.+..
T Consensus       332 iw~~~~~~  339 (416)
T 2pm9_A          332 VQTLQNLT  339 (416)
T ss_dssp             EEESCCCC
T ss_pred             EEEccCCC
Confidence            99997654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.56  E-value=2.3e-13  Score=75.51  Aligned_cols=78  Identities=24%  Similarity=0.417  Sum_probs=68.6

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      ++.++.+.+| ...|.+++|  ++..+++++.++.+.+||+.....        ...|.+++|+|++..+++++.|+.|+
T Consensus       166 ~~~~~~~~~~-~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~  242 (401)
T 4aez_A          166 QTKLRTMAGH-QARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQ  242 (401)
T ss_dssp             CCEEEEECCC-SSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CeEEEEecCC-CCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEE
Confidence            5677888888 999999999  568999999999999999984433        67899999999999999999999999


Q ss_pred             EEeCCCCee
Q psy16880         74 MWNLNSKLC   82 (84)
Q Consensus        74 ~~~~~~~~~   82 (84)
                      +||+++.++
T Consensus       243 iwd~~~~~~  251 (401)
T 4aez_A          243 IWDARSSIP  251 (401)
T ss_dssp             EEETTCSSE
T ss_pred             EccCCCCCc
Confidence            999987654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.56  E-value=3.7e-14  Score=77.75  Aligned_cols=77  Identities=14%  Similarity=0.170  Sum_probs=65.3

Q ss_pred             EEEecc-CCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------------------------CCCEEEEEEccC
Q psy16880          5 IHTFVH-SNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------------------------DSAVRSISFCSK   59 (84)
Q Consensus         5 ~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------------------------~~~v~~~~~~~~   59 (84)
                      ...+.. | ...|.+++|+|++..+++++.++.+++||+.....                        ...|.+++|+|+
T Consensus       138 ~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  216 (377)
T 3dwl_C          138 SKHLKRPL-RSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPS  216 (377)
T ss_dssp             CEEECSSC-CSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTT
T ss_pred             eeEeeccc-CCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCC
Confidence            456666 6 89999999999999999999999999999853210                        456999999999


Q ss_pred             CCEEEEecCCCcEEEEeCCCCee
Q psy16880         60 QRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        60 ~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                      ++.+++++.|+.|++||+++++.
T Consensus       217 ~~~l~~~~~d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          217 GNALAYAGHDSSVTIAYPSAPEQ  239 (377)
T ss_dssp             SSCEEEEETTTEEC-CEECSTTS
T ss_pred             CCEEEEEeCCCcEEEEECCCCCC
Confidence            99999999999999999987654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.56  E-value=2.2e-14  Score=82.57  Aligned_cols=74  Identities=19%  Similarity=0.309  Sum_probs=62.3

Q ss_pred             EEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEE--EEccCC-CEEEEecCCCcEEE
Q psy16880          6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSI--SFCSKQ-RTLISGGDDGSICM   74 (84)
Q Consensus         6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~--~~~~~~-~~~~~~~~~~~i~~   74 (84)
                      ..+.+| ...|.+++|+++ ..|++|+.|+.+++||+.....        ...|.++  .|+|++ .++++++.|++|++
T Consensus       260 ~~l~~h-~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvkl  337 (524)
T 2j04_B          260 LTLSLA-DSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYI  337 (524)
T ss_dssp             EEECCT-TTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred             EEEEcC-CCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence            466777 899999999985 4899999999999999975422        5679998  567887 88999999999999


Q ss_pred             EeCCCCe
Q psy16880         75 WNLNSKL   81 (84)
Q Consensus        75 ~~~~~~~   81 (84)
                      ||+++++
T Consensus       338 WD~~~~~  344 (524)
T 2j04_B          338 FNPKDIA  344 (524)
T ss_dssp             ECGGGHH
T ss_pred             EECCCCC
Confidence            9987654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.56  E-value=8.2e-14  Score=76.99  Aligned_cols=80  Identities=25%  Similarity=0.517  Sum_probs=70.2

Q ss_pred             ceEEEeccCCCcCEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCC------C----------CCCEEEEEEccC-CCEEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSK-QHTLISGGDDGSICMWNLNSKL------C----------DSAVRSISFCSK-QRTLI   64 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~------~----------~~~v~~~~~~~~-~~~~~   64 (84)
                      +.+..+.+| .+.|.+++|+|+ +..+++++.++.+.+||+....      .          ...|.+++|+|+ +..++
T Consensus       104 ~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  182 (416)
T 2pm9_A          104 NSMARFSNH-SSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFA  182 (416)
T ss_dssp             CEEEECCCS-SSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEE
T ss_pred             cchhhccCC-ccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEE
Confidence            367788888 999999999998 8999999999999999998765      2          567999999998 78999


Q ss_pred             EecCCCcEEEEeCCCCeec
Q psy16880         65 SGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        65 ~~~~~~~i~~~~~~~~~~~   83 (84)
                      +++.++.|++||+++++.+
T Consensus       183 ~~~~dg~v~iwd~~~~~~~  201 (416)
T 2pm9_A          183 SAGSSNFASIWDLKAKKEV  201 (416)
T ss_dssp             EESSSSCEEEEETTTTEEE
T ss_pred             EEcCCCCEEEEECCCCCcc
Confidence            9999999999999887653

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.55  E-value=8.5e-14  Score=84.08  Aligned_cols=73  Identities=15%  Similarity=0.143  Sum_probs=64.6

Q ss_pred             ccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880          9 VHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus         9 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                      .+| .+.|.+++|+|++.+|++|+.|+.+++||......      ...|.+++|+| +..+++++.|+.|++||+.++++
T Consensus        14 ~gh-~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~   91 (902)
T 2oaj_A           14 YGM-SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV   91 (902)
T ss_dssp             EEC-SSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE
T ss_pred             cCC-CCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE
Confidence            467 89999999999999999999999999999875543      56799999999 77899999999999999988765


Q ss_pred             c
Q psy16880         83 D   83 (84)
Q Consensus        83 ~   83 (84)
                      +
T Consensus        92 ~   92 (902)
T 2oaj_A           92 L   92 (902)
T ss_dssp             E
T ss_pred             E
Confidence            3

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.55  E-value=1.3e-13  Score=76.58  Aligned_cols=80  Identities=29%  Similarity=0.508  Sum_probs=67.3

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCC-CEEEEec--CCCcE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQ-RTLISGG--DDGSI   72 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~-~~~~~~~--~~~~i   72 (84)
                      ..+..+.+| .+.|.+++|+|++..+++++.++.+.+||+.....       ...|.+++|+|++ ..+++++  .|+.|
T Consensus       208 ~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i  286 (401)
T 4aez_A          208 HQIGTLQGH-SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQI  286 (401)
T ss_dssp             CEEEEEECC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEE
T ss_pred             ceeeEEcCC-CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEE
Confidence            456677788 99999999999999999999999999999987654       5689999999966 4555554  69999


Q ss_pred             EEEeCCCCeec
Q psy16880         73 CMWNLNSKLCD   83 (84)
Q Consensus        73 ~~~~~~~~~~~   83 (84)
                      ++||+++++++
T Consensus       287 ~i~d~~~~~~~  297 (401)
T 4aez_A          287 HFWNAATGARV  297 (401)
T ss_dssp             EEEETTTCCEE
T ss_pred             EEEECCCCCEE
Confidence            99999887654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.55  E-value=2.5e-13  Score=75.79  Aligned_cols=79  Identities=18%  Similarity=0.447  Sum_probs=58.4

Q ss_pred             CCceEEEec--cCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------------------------------
Q psy16880          1 DGSIIHTFV--HSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------------------------------   47 (84)
Q Consensus         1 ~g~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------------------------------   47 (84)
                      +|++++.++  +| ...|.+++|+|++.+|++|+.|+.+.+||+.+...                               
T Consensus       134 tg~~~~~~~~~~~-~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~  212 (420)
T 4gga_A          134 SGDILQLLQMEQP-GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIH  212 (420)
T ss_dssp             TCCEEEEEECCST-TCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEE
T ss_pred             CCCEEEEEEecCC-CCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCcee
Confidence            466666554  45 67899999999999999999999999999986543                               


Q ss_pred             -----------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCC
Q psy16880         48 -----------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSK   80 (84)
Q Consensus        48 -----------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   80 (84)
                                       ...+..+.+.|++..+++++.|+.+++|+..++
T Consensus       213 ~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~  262 (420)
T 4gga_A          213 HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  262 (420)
T ss_dssp             EEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred             EeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence                             334556666666666666666666666666543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.55  E-value=2.3e-13  Score=75.04  Aligned_cols=71  Identities=17%  Similarity=0.410  Sum_probs=62.5

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      .+.|.+++|+|++..|++++.++.+.+||......      ...|.+++|+|++..+++++.++.+++||+.+++.+
T Consensus       108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  184 (425)
T 1r5m_A          108 TNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM  184 (425)
T ss_dssp             CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence            77999999999999999999999999999443322      668999999999999999999999999999887653

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.54  E-value=3.2e-13  Score=75.86  Aligned_cols=78  Identities=21%  Similarity=0.306  Sum_probs=68.6

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICM   74 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~   74 (84)
                      ++++..+.+| ...|.+++|+|++..+++++.++.+++||+.+...       ...|.+++|+  +..+++++.|+.|++
T Consensus       300 ~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~v  376 (464)
T 3v7d_B          300 MKCLYILSGH-TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRG  376 (464)
T ss_dssp             TEEEEEECCC-SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEE
T ss_pred             CcEEEEecCC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEE
Confidence            5677888888 99999999999999999999999999999987655       5679999997  468999999999999


Q ss_pred             EeCCCCee
Q psy16880         75 WNLNSKLC   82 (84)
Q Consensus        75 ~~~~~~~~   82 (84)
                      ||+++.+.
T Consensus       377 wd~~~~~~  384 (464)
T 3v7d_B          377 WDANDYSR  384 (464)
T ss_dssp             EETTTCCE
T ss_pred             EECCCCce
Confidence            99987653

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.54  E-value=9.8e-14  Score=82.36  Aligned_cols=77  Identities=17%  Similarity=0.365  Sum_probs=69.1

Q ss_pred             ceEEEeccCCCcCEEEEEEccC--CCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccC--CCEEEEecCC
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSK--QHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSK--QRTLISGGDD   69 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~--~~~~~~~~~~   69 (84)
                      +.+..+.+| .+.|.+++|+++  +..+++++.|+.+.+||+.....         ...|.+++|+|+  +..+++++.|
T Consensus        44 ~~~~~l~~h-~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d  122 (753)
T 3jro_A           44 KLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD  122 (753)
T ss_dssp             EEEEEECCC-SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             ccceeccCC-cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCC
Confidence            456778888 999999999987  89999999999999999987642         678999999999  9999999999


Q ss_pred             CcEEEEeCCCC
Q psy16880         70 GSICMWNLNSK   80 (84)
Q Consensus        70 ~~i~~~~~~~~   80 (84)
                      +.|++||++++
T Consensus       123 g~I~vwdl~~~  133 (753)
T 3jro_A          123 GKVSVVEFKEN  133 (753)
T ss_dssp             SEEEEEECCSS
T ss_pred             CcEEEEEeecC
Confidence            99999999876

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.54  E-value=1.3e-13  Score=83.24  Aligned_cols=73  Identities=12%  Similarity=0.161  Sum_probs=64.0

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------------CCCEEEEEEc-----cCC---C
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------------DSAVRSISFC-----SKQ---R   61 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------------~~~v~~~~~~-----~~~---~   61 (84)
                      +++..+++| .+.|.+++|+|+| +|++|+.|+.+++||+.....             ...|.+++|+     |++   .
T Consensus       566 ~~~~~l~~h-~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~  643 (902)
T 2oaj_A          566 MPSTAVHAN-KGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSI  643 (902)
T ss_dssp             EEEEEECCC-SCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEE
T ss_pred             ceeEEEEcC-CCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcce
Confidence            357788888 9999999999999 999999999999999876421             3459999999     875   7


Q ss_pred             EEEEecCCCcEEEEeC
Q psy16880         62 TLISGGDDGSICMWNL   77 (84)
Q Consensus        62 ~~~~~~~~~~i~~~~~   77 (84)
                      .+++++.|++|++||+
T Consensus       644 ~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          644 LMVCGTDMGEVITYKI  659 (902)
T ss_dssp             EEEEEETTSEEEEEEE
T ss_pred             EEEEEecCCcEEEEEE
Confidence            9999999999999998

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.53  E-value=3.2e-14  Score=84.39  Aligned_cols=76  Identities=13%  Similarity=0.222  Sum_probs=62.9

Q ss_pred             EEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccC--CCEEEEecCCCcEE
Q psy16880          5 IHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSK--QRTLISGGDDGSIC   73 (84)
Q Consensus         5 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~--~~~~~~~~~~~~i~   73 (84)
                      +..+++| .+.|.+++|+|++..+++++.++.+.+||+.....         ...|.+++|+|+  +..+++++.|+.|+
T Consensus         2 ~~~l~gH-~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~   80 (753)
T 3jro_A            2 VVIANAH-NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   80 (753)
T ss_dssp             ------C-CCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred             eeecccC-cceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence            3567788 99999999999999999999999999999874322         568999999987  89999999999999


Q ss_pred             EEeCCCCe
Q psy16880         74 MWNLNSKL   81 (84)
Q Consensus        74 ~~~~~~~~   81 (84)
                      +||+.+++
T Consensus        81 vwd~~~~~   88 (753)
T 3jro_A           81 IWKEENGR   88 (753)
T ss_dssp             EEEEETTE
T ss_pred             EEECCCCc
Confidence            99988764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.53  E-value=1.1e-13  Score=75.13  Aligned_cols=73  Identities=12%  Similarity=0.280  Sum_probs=61.5

Q ss_pred             ccCCCcCEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC--------------------------CCCEEEEEEccCCC
Q psy16880          9 VHSNNSAVRSISFCSKQH-TLISGGDDGSICMWNLNSKLC--------------------------DSAVRSISFCSKQR   61 (84)
Q Consensus         9 ~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~--------------------------~~~v~~~~~~~~~~   61 (84)
                      ..| ...|.+++|+|++. ++++++.++.+.+||+.....                          ...|.+++|+|+++
T Consensus       256 ~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  334 (357)
T 3i2n_A          256 KAH-KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKR  334 (357)
T ss_dssp             ECC-SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSST
T ss_pred             CCC-cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCC
Confidence            367 89999999999988 899999999999999874311                          56799999999999


Q ss_pred             EEE-EecCCCcEEEEeCCCCee
Q psy16880         62 TLI-SGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        62 ~~~-~~~~~~~i~~~~~~~~~~   82 (84)
                      .++ +++.|+.|++|++.+.+.
T Consensus       335 ~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          335 GLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             TEEEEEETTSEEEEEEECC---
T ss_pred             eEEEEecCCCcEEEEECCCccc
Confidence            888 799999999999987654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.53  E-value=1.2e-13  Score=75.28  Aligned_cols=76  Identities=14%  Similarity=0.327  Sum_probs=67.4

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICM   74 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~   74 (84)
                      ++++..+..| ...|.+++|+|++..+++++.++.+.+||+.....       ...+.+++|+|++.+++++ .|+.+++
T Consensus       192 ~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i  269 (372)
T 1k8k_C          192 GELMFESSSS-CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVL  269 (372)
T ss_dssp             TCEEEECCCC-SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEE
T ss_pred             hhheEecCCC-CCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEE
Confidence            5677788888 89999999999999999999999999999986655       5689999999999877777 8999999


Q ss_pred             EeCCC
Q psy16880         75 WNLNS   79 (84)
Q Consensus        75 ~~~~~   79 (84)
                      |++++
T Consensus       270 ~~~~~  274 (372)
T 1k8k_C          270 FTYDS  274 (372)
T ss_dssp             EEEET
T ss_pred             EEccC
Confidence            99876

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.53  E-value=1.5e-13  Score=79.85  Aligned_cols=69  Identities=9%  Similarity=0.206  Sum_probs=59.7

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCC------CCC---CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNS------KLC---DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~------~~~---~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (84)
                      ...|.+++|+|+|..+++++.++.+.+||...      ...   ...+.+++|+|+++.+++++.|++|++|++.+++
T Consensus        85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~  162 (588)
T 2j04_A           85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNS  162 (588)
T ss_dssp             SCCEEEEEECSSSSCEEEEETTSCEEEEETTEEEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCT
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCceeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence            67899999999999999999999999999321      111   3369999999999999999999999999998764

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.53  E-value=2.1e-13  Score=76.02  Aligned_cols=72  Identities=21%  Similarity=0.337  Sum_probs=62.8

Q ss_pred             ccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCC------------C---CCCEEEEEEccCC-CEEEEecCCCcE
Q psy16880          9 VHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKL------------C---DSAVRSISFCSKQ-RTLISGGDDGSI   72 (84)
Q Consensus         9 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~------------~---~~~v~~~~~~~~~-~~~~~~~~~~~i   72 (84)
                      .+| ...|.+++|+|++..++++ .|+.+.+||+....            .   ...|.+++|+|++ ..+++++.|+.|
T Consensus       174 ~~h-~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i  251 (447)
T 3dw8_B          174 NAH-TYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI  251 (447)
T ss_dssp             SCC-SSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred             cCC-CcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence            567 8999999999999999998 79999999998321            1   5679999999998 899999999999


Q ss_pred             EEEeCCCCee
Q psy16880         73 CMWNLNSKLC   82 (84)
Q Consensus        73 ~~~~~~~~~~   82 (84)
                      ++||+++++.
T Consensus       252 ~iwd~~~~~~  261 (447)
T 3dw8_B          252 RLCDMRASAL  261 (447)
T ss_dssp             EEEETTTCSS
T ss_pred             EEEECcCCcc
Confidence            9999987653

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.53  E-value=3.4e-13  Score=75.16  Aligned_cols=73  Identities=15%  Similarity=0.348  Sum_probs=63.2

Q ss_pred             eccCCCcCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC-----------C------------CCEEEEEEccCCCEE
Q psy16880          8 FVHSNNSAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC-----------D------------SAVRSISFCSKQRTL   63 (84)
Q Consensus         8 ~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~-----------~------------~~v~~~~~~~~~~~~   63 (84)
                      +.+| ...|.+++|+|++ ..+++++.++.+++||++....           .            ..|.+++|+|++..+
T Consensus       222 ~~~~-~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  300 (447)
T 3dw8_B          222 MEEL-TEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYM  300 (447)
T ss_dssp             GGGC-CCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEE
T ss_pred             cccc-CcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEE
Confidence            4567 8899999999998 9999999999999999976542           2            289999999999999


Q ss_pred             EEecCCCcEEEEeCCC-Cee
Q psy16880         64 ISGGDDGSICMWNLNS-KLC   82 (84)
Q Consensus        64 ~~~~~~~~i~~~~~~~-~~~   82 (84)
                      ++++. +.|++||++. +++
T Consensus       301 ~~~~~-~~v~iwd~~~~~~~  319 (447)
T 3dw8_B          301 MTRDY-LSVKVWDLNMENRP  319 (447)
T ss_dssp             EEEES-SEEEEEETTCCSSC
T ss_pred             EEeeC-CeEEEEeCCCCccc
Confidence            99988 9999999986 544

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.53  E-value=4.9e-13  Score=72.30  Aligned_cols=74  Identities=22%  Similarity=0.364  Sum_probs=64.5

Q ss_pred             ccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCC------CC-------CC---------CEEEEEEccCCCEEEE
Q psy16880          9 VHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSK------LC-------DS---------AVRSISFCSKQRTLIS   65 (84)
Q Consensus         9 ~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~------~~-------~~---------~v~~~~~~~~~~~~~~   65 (84)
                      ..+ ...+.+++|+| ++..+++++.++.+.+||+...      ..       ..         .|.+++|+|++..+++
T Consensus       190 ~~~-~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  268 (342)
T 1yfq_A          190 SGL-KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYT  268 (342)
T ss_dssp             CSC-SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEE
T ss_pred             cCC-CCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEE
Confidence            345 77899999999 9999999999999999999765      22       22         8999999999999999


Q ss_pred             ecCCCcEEEEeCCCCeec
Q psy16880         66 GGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        66 ~~~~~~i~~~~~~~~~~~   83 (84)
                      ++.|+.|++||+.+++.+
T Consensus       269 ~~~dg~i~vwd~~~~~~~  286 (342)
T 1yfq_A          269 AGSDGIISCWNLQTRKKI  286 (342)
T ss_dssp             EETTSCEEEEETTTTEEE
T ss_pred             ecCCceEEEEcCccHhHh
Confidence            999999999999987754

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.52  E-value=1.6e-13  Score=74.37  Aligned_cols=75  Identities=20%  Similarity=0.303  Sum_probs=62.5

Q ss_pred             EEeccCCCcCEEEEEEccCCCEE-EEeCC---CCcEEEEeCCCCCC--------CCCEEEEEEccC---CCEEEEecCCC
Q psy16880          6 HTFVHSNNSAVRSISFCSKQHTL-ISGGD---DGSICMWNLNSKLC--------DSAVRSISFCSK---QRTLISGGDDG   70 (84)
Q Consensus         6 ~~~~~~~~~~v~~~~~~~~~~~l-~~~~~---~~~~~~~d~~~~~~--------~~~v~~~~~~~~---~~~~~~~~~~~   70 (84)
                      +.+++| .+.|.+++|+|++..+ ++++.   ++.+.+||+.....        ...|.+++|+|+   +..+++++.|+
T Consensus        12 ~~~~~h-~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg   90 (357)
T 3i2n_A           12 HIQKGF-NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG   90 (357)
T ss_dssp             EEEEEC-SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred             hhccCC-CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence            344667 9999999999988654 56665   89999999987654        678999999998   68999999999


Q ss_pred             cEEEEeCCCCe
Q psy16880         71 SICMWNLNSKL   81 (84)
Q Consensus        71 ~i~~~~~~~~~   81 (84)
                      .|++||+.+++
T Consensus        91 ~i~iwd~~~~~  101 (357)
T 3i2n_A           91 NLHIWNLEAPE  101 (357)
T ss_dssp             CEEEECTTSCS
T ss_pred             eEEEEeCCCCC
Confidence            99999998765

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.52  E-value=2.5e-13  Score=78.92  Aligned_cols=65  Identities=11%  Similarity=0.276  Sum_probs=57.6

Q ss_pred             CEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------------------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880         15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------------------DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      .+.+++|+|+|+.|++|+.|+.+++||+..+..                  ...|.+++|+|++  +++++.|+.+++|+
T Consensus       131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd  208 (588)
T 2j04_A          131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMT  208 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEEC
T ss_pred             cEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEE
Confidence            599999999999999999999999999987631                  3489999999998  77888899999999


Q ss_pred             CCCCe
Q psy16880         77 LNSKL   81 (84)
Q Consensus        77 ~~~~~   81 (84)
                      +.+++
T Consensus       209 ~~~~~  213 (588)
T 2j04_A          209 VSASS  213 (588)
T ss_dssp             CCSSS
T ss_pred             CCCCc
Confidence            97665

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.51  E-value=1.7e-13  Score=75.39  Aligned_cols=75  Identities=12%  Similarity=0.195  Sum_probs=66.1

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCC------C-------CCCEEEEEEccC----C---CEE
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKL------C-------DSAVRSISFCSK----Q---RTL   63 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~------~-------~~~v~~~~~~~~----~---~~~   63 (84)
                      ....+++| .+.|.+++|+|  ..|++++.++.+.+||+....      .       ...|.+++|+|+    +   ..+
T Consensus         8 ~~~~~~~h-~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l   84 (397)
T 1sq9_A            8 TANAGKAH-DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   84 (397)
T ss_dssp             EEEESSCS-SSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             hhhhhhhh-hcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence            35567788 99999999988  899999999999999998776      2       678999999999    8   899


Q ss_pred             EEecCCCcEEEEeCCCCe
Q psy16880         64 ISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        64 ~~~~~~~~i~~~~~~~~~   81 (84)
                      ++++.|+.|++|++.+++
T Consensus        85 ~s~~~dg~i~iw~~~~~~  102 (397)
T 1sq9_A           85 ATTSFSGDLLFYRITRED  102 (397)
T ss_dssp             EEEETTSCEEEEEEEECT
T ss_pred             EEEcCCCCEEEEEccCCc
Confidence            999999999999987654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.51  E-value=4e-14  Score=81.52  Aligned_cols=78  Identities=12%  Similarity=0.141  Sum_probs=64.6

Q ss_pred             eEEEeccCCCcCEEEE--EEccCC-CEEEEeCCCCcEEEEeCCCCCC--------C-CCEEEEEEccCCCEEEEecCCCc
Q psy16880          4 IIHTFVHSNNSAVRSI--SFCSKQ-HTLISGGDDGSICMWNLNSKLC--------D-SAVRSISFCSKQRTLISGGDDGS   71 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~~~~~~~~d~~~~~~--------~-~~v~~~~~~~~~~~~~~~~~~~~   71 (84)
                      +...+.+| .+.|.++  .|++++ .+|++++.|+.+++||++....        . ..|.+++|+|++..+++++.|+.
T Consensus       300 ~~~~~~~H-~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~t  378 (524)
T 2j04_B          300 PSFYDQVH-DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASS  378 (524)
T ss_dssp             CSEEEECS-SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSE
T ss_pred             ceEEeecc-cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCc
Confidence            34456778 8999999  567777 8999999999999999976433        1 24788999999999999999999


Q ss_pred             EEEEeCCCCee
Q psy16880         72 ICMWNLNSKLC   82 (84)
Q Consensus        72 i~~~~~~~~~~   82 (84)
                      |++||++++.+
T Consensus       379 v~lwd~~~~~~  389 (524)
T 2j04_B          379 LRAVPSRAAFA  389 (524)
T ss_dssp             EEEEETTCTTC
T ss_pred             EEEEECccccc
Confidence            99999987654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.51  E-value=4.1e-13  Score=75.24  Aligned_cols=77  Identities=18%  Similarity=0.375  Sum_probs=66.5

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC--------------CCCEEEEEEcc-CCCEEEEe
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQH-TLISGGDDGSICMWNLNSKLC--------------DSAVRSISFCS-KQRTLISG   66 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~--------------~~~v~~~~~~~-~~~~~~~~   66 (84)
                      +++..+.+| ...|.+++|+|++. .|++++.++.+.+||+.....              ...|.+++|+| ++..++++
T Consensus       172 ~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~  250 (430)
T 2xyi_A          172 QPDLRLRGH-QKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV  250 (430)
T ss_dssp             CCSEEEECC-SSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred             CCcEEecCC-CCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE
Confidence            456677788 88999999999888 999999999999999986211              56799999999 67889999


Q ss_pred             cCCCcEEEEeCCCC
Q psy16880         67 GDDGSICMWNLNSK   80 (84)
Q Consensus        67 ~~~~~i~~~~~~~~   80 (84)
                      +.++.|++||+++.
T Consensus       251 ~~dg~i~i~d~~~~  264 (430)
T 2xyi_A          251 ADDQKLMIWDTRNN  264 (430)
T ss_dssp             ETTSEEEEEETTCS
T ss_pred             eCCCeEEEEECCCC
Confidence            99999999999876

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.51  E-value=5.9e-13  Score=73.52  Aligned_cols=54  Identities=22%  Similarity=0.482  Sum_probs=46.0

Q ss_pred             CCCEEEEeCCCCcEEEEeCCCCCC-------C-CCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880         24 KQHTLISGGDDGSICMWNLNSKLC-------D-SAVRSISFCSKQRTLISGGDDGSICMWNL   77 (84)
Q Consensus        24 ~~~~l~~~~~~~~~~~~d~~~~~~-------~-~~v~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (84)
                      ++..+++++.|+.+++||+.++..       . ..+..++|+|+++++++++.|++|++||+
T Consensus       294 sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          294 KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            366789999999999999998765       1 23456899999999999999999999985

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.50  E-value=5.5e-13  Score=74.99  Aligned_cols=80  Identities=14%  Similarity=0.148  Sum_probs=67.1

Q ss_pred             CceEEEec--cCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----------CCCEEEEEEccC---CCEEEE
Q psy16880          2 GSIIHTFV--HSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----------DSAVRSISFCSK---QRTLIS   65 (84)
Q Consensus         2 g~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----------~~~v~~~~~~~~---~~~~~~   65 (84)
                      ++.+..+.  .+ ...|.+++|+|++..+++++.++.+.+|++.....           ...|.+++|+|+   +..+++
T Consensus       137 ~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s  215 (450)
T 2vdu_B          137 KNVLKLRKRFCF-SKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIIT  215 (450)
T ss_dssp             SSCEEEEEEEEC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEE
T ss_pred             CceeeeeecccC-CCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEE
Confidence            44556655  44 67899999999999999999999999999865431           567999999999   889999


Q ss_pred             ecCCCcEEEEeCCCCee
Q psy16880         66 GGDDGSICMWNLNSKLC   82 (84)
Q Consensus        66 ~~~~~~i~~~~~~~~~~   82 (84)
                      ++.|+.|++||++++++
T Consensus       216 ~~~d~~i~vwd~~~~~~  232 (450)
T 2vdu_B          216 SDRDEHIKISHYPQCFI  232 (450)
T ss_dssp             EETTSCEEEEEESCTTC
T ss_pred             EcCCCcEEEEECCCCce
Confidence            99999999999987654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.50  E-value=2.2e-13  Score=75.22  Aligned_cols=81  Identities=14%  Similarity=0.124  Sum_probs=59.1

Q ss_pred             CceEEEeccCCCcCEEEEEEcc---CCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEE-----
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCS---KQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTL-----   63 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~-----   63 (84)
                      |+.+..+..| ...+..++|++   ++..|++++.|+.+++||+.++..          ...+.+++|+|++..+     
T Consensus       168 G~~~~s~~~~-~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~  246 (356)
T 2w18_A          168 GGGKENQFLM-PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSH  246 (356)
T ss_dssp             SCEEEEEEEC-CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-
T ss_pred             CceeeeeccC-CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEecc
Confidence            4555555555 55666667777   568899999999999999998765          1246677899999876     


Q ss_pred             -------EEecCCCcEEEEeCCCCeec
Q psy16880         64 -------ISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        64 -------~~~~~~~~i~~~~~~~~~~~   83 (84)
                             ++++.|+++++||+.+++++
T Consensus       247 ~~~~w~laSGs~D~tIklWd~~tgk~l  273 (356)
T 2w18_A          247 PCAKESESLRSPVFQLIVINPKTTLSV  273 (356)
T ss_dssp             -----------CCEEEEEEETTTTEEE
T ss_pred             CCCcceeeccCCCcEEEEEECCCCEEE
Confidence                   45778899999999988753

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.48  E-value=1.3e-12  Score=73.22  Aligned_cols=73  Identities=19%  Similarity=0.439  Sum_probs=63.6

Q ss_pred             EEeccCCCcCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCC---C-------CCCEEEEEEccCCC-EEEEecCCCcEE
Q psy16880          6 HTFVHSNNSAVRSISFCS-KQHTLISGGDDGSICMWNLNSKL---C-------DSAVRSISFCSKQR-TLISGGDDGSIC   73 (84)
Q Consensus         6 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~---~-------~~~v~~~~~~~~~~-~~~~~~~~~~i~   73 (84)
                      ..+..| ...|.+++|+| ++..|++++.++.+.+||++...   .       ...|.+++|+|++. .+++++.|+.|+
T Consensus       225 ~~~~~h-~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~  303 (430)
T 2xyi_A          225 NIFTGH-TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA  303 (430)
T ss_dssp             EEECCC-SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred             eeecCC-CCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEE
Confidence            455667 88999999999 67899999999999999998763   2       56899999999886 688999999999


Q ss_pred             EEeCCC
Q psy16880         74 MWNLNS   79 (84)
Q Consensus        74 ~~~~~~   79 (84)
                      +||+++
T Consensus       304 vwd~~~  309 (430)
T 2xyi_A          304 LWDLRN  309 (430)
T ss_dssp             EEETTC
T ss_pred             EEeCCC
Confidence            999986

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.46  E-value=1.2e-12  Score=72.70  Aligned_cols=79  Identities=20%  Similarity=0.293  Sum_probs=62.1

Q ss_pred             CceEEEeccCCCcCEEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC--------------------------------C
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC--------------------------------D   48 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~--------------------------------~   48 (84)
                      +.++..+..| .+.+.+++|+|++ ..|++++.|+.+++||+.....                                .
T Consensus       176 ~~~~~~~~~~-~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  254 (393)
T 4gq1_A          176 EGPILAGYPL-SSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIA  254 (393)
T ss_dssp             TEEEEEEEEC-SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCS
T ss_pred             CceeeeecCC-CCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccc
Confidence            3455666677 8899999999987 4899999999999999976533                                3


Q ss_pred             CCEEEEEEc-cCCCEEEEecCCCcEEEEeCCCCe
Q psy16880         49 SAVRSISFC-SKQRTLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        49 ~~v~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~   81 (84)
                      ..+.++.|. |++..+++++.|+.+++||+..++
T Consensus       255 ~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~  288 (393)
T 4gq1_A          255 SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN  288 (393)
T ss_dssp             SSCSEEEEETTTTCEEEEECTTSEEEEEEC----
T ss_pred             ccceeeeeecCCCCEEEEEeCCCCEEEEECccCC
Confidence            457778876 799999999999999999987654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.46  E-value=1.1e-12  Score=72.11  Aligned_cols=78  Identities=12%  Similarity=0.164  Sum_probs=65.2

Q ss_pred             CCceEEEec-c-CCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------------------------------C
Q psy16880          1 DGSIIHTFV-H-SNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------------------------------D   48 (84)
Q Consensus         1 ~g~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------------------------------~   48 (84)
                      +++++..++ + | .+.|.+++|+|++..|++++.|+.+++||+.....                              .
T Consensus       227 ~~~~~~~~~~g~h-~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (355)
T 3vu4_A          227 DGVLVREFRRGLD-RADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKH  305 (355)
T ss_dssp             TCCEEEEEECTTC-CSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTT
T ss_pred             CCcEEEEEEcCCC-CCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCC
Confidence            467788887 5 6 89999999999999999999999999999975432                              0


Q ss_pred             CCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880         49 SAVRSISFCSKQRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus        49 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~   79 (84)
                      .....++|++++..+++++.|+.+.+|++..
T Consensus       306 ~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          306 VRGCKIAWISESSLVVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             CCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred             CCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence            1126789999999999999999999998654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.43  E-value=4.8e-12  Score=70.91  Aligned_cols=76  Identities=18%  Similarity=0.421  Sum_probs=63.9

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      +++.+..+.+| .+.|.+++|  ++..+++|+.|+.+.+||+.+...       ...|.+++|++  ..+++++.|+.|+
T Consensus       162 ~~~~~~~~~~h-~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~  236 (435)
T 1p22_A          162 TLECKRILTGH-TGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIA  236 (435)
T ss_dssp             SCCEEEEECCC-SSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEE
T ss_pred             CCeEEEEEcCC-CCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEE
Confidence            35677888888 899999988  788999999999999999987655       56788998864  4899999999999


Q ss_pred             EEeCCCCe
Q psy16880         74 MWNLNSKL   81 (84)
Q Consensus        74 ~~~~~~~~   81 (84)
                      +||++++.
T Consensus       237 vwd~~~~~  244 (435)
T 1p22_A          237 VWDMASPT  244 (435)
T ss_dssp             EEECSSSS
T ss_pred             EEeCCCCC
Confidence            99987654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.43  E-value=6e-13  Score=75.08  Aligned_cols=70  Identities=13%  Similarity=0.174  Sum_probs=59.7

Q ss_pred             CcCEEEEEEccCCCEEE----EeCCCCcEEEEeCCCC--------CC----------CCCEEEEEEccC-CCEEEEecCC
Q psy16880         13 NSAVRSISFCSKQHTLI----SGGDDGSICMWNLNSK--------LC----------DSAVRSISFCSK-QRTLISGGDD   69 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~----~~~~~~~~~~~d~~~~--------~~----------~~~v~~~~~~~~-~~~~~~~~~~   69 (84)
                      .+.|.+++|+|+++.|+    +++.++.+++||+...        ..          ...|.+++|+|+ +..+++++.|
T Consensus        92 ~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D  171 (434)
T 2oit_A           92 KFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD  171 (434)
T ss_dssp             SSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred             CCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC
Confidence            45799999999999999    8999999999998543        11          457999999997 7899999999


Q ss_pred             CcEEEEeCCCCee
Q psy16880         70 GSICMWNLNSKLC   82 (84)
Q Consensus        70 ~~i~~~~~~~~~~   82 (84)
                      +.+++||++++..
T Consensus       172 g~v~iwD~~~~~~  184 (434)
T 2oit_A          172 GSIAVLQVTETVK  184 (434)
T ss_dssp             SCEEEEEESSSEE
T ss_pred             CeEEEEEcCCCcc
Confidence            9999999987643

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.39  E-value=1.6e-11  Score=68.76  Aligned_cols=78  Identities=24%  Similarity=0.492  Sum_probs=63.3

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecCCC
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGDDG   70 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~   70 (84)
                      +++++..+.+| ...|.+++|+  +..+++++.++.+.+||+.....          ...|.+++|  ++..+++++.|+
T Consensus       202 ~~~~~~~~~~h-~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg  276 (435)
T 1p22_A          202 TGEMLNTLIHH-CEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDR  276 (435)
T ss_dssp             SCCEEEEECCC-CSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTS
T ss_pred             CCcEEEEEcCC-CCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCC
Confidence            36677888888 8899999885  56899999999999999976543          557888888  567899999999


Q ss_pred             cEEEEeCCCCeec
Q psy16880         71 SICMWNLNSKLCD   83 (84)
Q Consensus        71 ~i~~~~~~~~~~~   83 (84)
                      .|++||+++++++
T Consensus       277 ~i~vwd~~~~~~~  289 (435)
T 1p22_A          277 TIKVWNTSTCEFV  289 (435)
T ss_dssp             EEEEEETTTCCEE
T ss_pred             eEEEEECCcCcEE
Confidence            9999998877653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.38  E-value=1.4e-11  Score=69.04  Aligned_cols=77  Identities=26%  Similarity=0.611  Sum_probs=59.5

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      +++++..+.+| .+.|.+++++  +..+++++.|+.+.+||+.+...       ...|.++++.  +..+++++.|+.|+
T Consensus       148 ~~~~~~~~~~h-~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~  222 (445)
T 2ovr_B          148 TGKCLRTLVGH-TGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLR  222 (445)
T ss_dssp             TCCEEEECCCC-SSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEE
T ss_pred             CCcEEEEEcCC-CCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEE
Confidence            35677788888 8888888886  66888888888888898876544       5567888775  45688888888888


Q ss_pred             EEeCCCCee
Q psy16880         74 MWNLNSKLC   82 (84)
Q Consensus        74 ~~~~~~~~~   82 (84)
                      +||++++++
T Consensus       223 ~wd~~~~~~  231 (445)
T 2ovr_B          223 VWDIETGQC  231 (445)
T ss_dssp             EEESSSCCE
T ss_pred             EEECCCCcE
Confidence            888877654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.37  E-value=3.6e-11  Score=66.20  Aligned_cols=80  Identities=5%  Similarity=0.128  Sum_probs=64.6

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEE-EEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEE-EecCCCcEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTL-ISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLI-SGGDDGSIC   73 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~-~~~~~~~i~   73 (84)
                      ++++..+..+  ..+.+++|+|+++.+ ++++.++.+.+||..+...      ...+.+++|+|+++.++ ++..++.|.
T Consensus        22 ~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~   99 (391)
T 1l0q_A           22 NKVTATIPVG--SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLS   99 (391)
T ss_dssp             TEEEEEEECS--SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             CeEEEEeecC--CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEE
Confidence            5667777665  457899999999876 6777899999999977655      55899999999998775 555679999


Q ss_pred             EEeCCCCeec
Q psy16880         74 MWNLNSKLCD   83 (84)
Q Consensus        74 ~~~~~~~~~~   83 (84)
                      +||+.+++.+
T Consensus       100 v~d~~~~~~~  109 (391)
T 1l0q_A          100 VIDTTSNTVA  109 (391)
T ss_dssp             EEETTTTEEE
T ss_pred             EEECCCCeEE
Confidence            9999987653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.37  E-value=1.4e-11  Score=69.04  Aligned_cols=73  Identities=25%  Similarity=0.519  Sum_probs=32.0

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      ++..+.+| ...|.++++  ++..+++++.++.+.+||+.....       ...+.+++|  ++..+++++.|+.|++||
T Consensus       231 ~~~~~~~~-~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d  305 (445)
T 2ovr_B          231 CLHVLMGH-VAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWD  305 (445)
T ss_dssp             EEEEEECC-SSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEE
T ss_pred             EEEEEcCC-cccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEE
Confidence            33344444 444444444  344444444444444444433222       233444444  334444444455555555


Q ss_pred             CCCCe
Q psy16880         77 LNSKL   81 (84)
Q Consensus        77 ~~~~~   81 (84)
                      +++++
T Consensus       306 ~~~~~  310 (445)
T 2ovr_B          306 VETGN  310 (445)
T ss_dssp             TTTCC
T ss_pred             CCCCC
Confidence            44433

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.36  E-value=5.1e-11  Score=65.60  Aligned_cols=81  Identities=10%  Similarity=0.214  Sum_probs=65.3

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEE-EEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEE-EEecCCCcE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTL-ISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTL-ISGGDDGSI   72 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~-~~~~~~~~i   72 (84)
                      +++++..+..+  ..+.+++|+|+++.+ +++..++.+.+||+.+...      ...+.+++|+|+++.+ ++++.++.|
T Consensus        63 ~~~~~~~~~~~--~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v  140 (391)
T 1l0q_A           63 TNNVIATVPAG--SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTV  140 (391)
T ss_dssp             TTEEEEEEECS--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             CCeEEEEEECC--CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEE
Confidence            35666676664  488999999999876 4566779999999987655      5678999999999877 677889999


Q ss_pred             EEEeCCCCeec
Q psy16880         73 CMWNLNSKLCD   83 (84)
Q Consensus        73 ~~~~~~~~~~~   83 (84)
                      .+||+.+++.+
T Consensus       141 ~~~d~~~~~~~  151 (391)
T 1l0q_A          141 SVINTVTKAVI  151 (391)
T ss_dssp             EEEETTTTEEE
T ss_pred             EEEECCCCcEE
Confidence            99999887653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.35  E-value=3.4e-11  Score=67.54  Aligned_cols=78  Identities=12%  Similarity=0.084  Sum_probs=62.2

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEEEEeCCCC---cEEEEeCCCCCC------CCCEEEEEEccCCCEEE-EecCCC--c
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDG---SICMWNLNSKLC------DSAVRSISFCSKQRTLI-SGGDDG--S   71 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~-~~~~~~--~   71 (84)
                      ..+.+..| ...+.+++|+|+++.++.++.++   .+.+||+.++..      ...+.+++|+|+++.++ +++.++  .
T Consensus       170 ~~~~l~~~-~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~  248 (415)
T 2hqs_A          170 NQFVVHRS-PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLN  248 (415)
T ss_dssp             SCEEEEEE-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred             CCEEEeCC-CCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCce
Confidence            34555666 78899999999999999888774   999999987655      56789999999999777 555554  4


Q ss_pred             EEEEeCCCCee
Q psy16880         72 ICMWNLNSKLC   82 (84)
Q Consensus        72 i~~~~~~~~~~   82 (84)
                      |.+||+.+++.
T Consensus       249 i~~~d~~~~~~  259 (415)
T 2hqs_A          249 LYVMDLASGQI  259 (415)
T ss_dssp             EEEEETTTCCE
T ss_pred             EEEEECCCCCE
Confidence            99999987653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.33  E-value=1.7e-11  Score=68.30  Aligned_cols=74  Identities=12%  Similarity=0.083  Sum_probs=62.3

Q ss_pred             ccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEE-EecCCCcEEEEeCCCC
Q psy16880          9 VHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLI-SGGDDGSICMWNLNSK   80 (84)
Q Consensus         9 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~   80 (84)
                      .+| .+.|.+++|++++..+++++.++.+.+||+.....       ...+.+++|+|++..++ +++.++.|.+||++++
T Consensus       166 ~~~-~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~  244 (433)
T 3bws_A          166 KKK-LGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK  244 (433)
T ss_dssp             HTT-CCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             ccc-CCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC
Confidence            355 77899999999999999999999999999987554       55799999999998775 5557899999999887


Q ss_pred             eec
Q psy16880         81 LCD   83 (84)
Q Consensus        81 ~~~   83 (84)
                      +.+
T Consensus       245 ~~~  247 (433)
T 3bws_A          245 LEI  247 (433)
T ss_dssp             EEE
T ss_pred             cEE
Confidence            653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.31  E-value=1e-10  Score=65.16  Aligned_cols=81  Identities=10%  Similarity=0.065  Sum_probs=66.2

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEE-EEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEec-------
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTL-ISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGG-------   67 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~-------   67 (84)
                      ++.+..+..+ ...+.+++|+|++..+ ++++.++.+.+||+.....      ...+.+++|+|+++.+++++       
T Consensus       201 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~  279 (433)
T 3bws_A          201 LAYKATVDLT-GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQE  279 (433)
T ss_dssp             CCEEEEEECS-SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTC
T ss_pred             ceEEEEEcCC-CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccc
Confidence            4667777777 7889999999999877 5666899999999976654      45689999999999888877       


Q ss_pred             -CCCcEEEEeCCCCeec
Q psy16880         68 -DDGSICMWNLNSKLCD   83 (84)
Q Consensus        68 -~~~~i~~~~~~~~~~~   83 (84)
                       .++.|.+||+++++.+
T Consensus       280 ~~dg~i~~~d~~~~~~~  296 (433)
T 3bws_A          280 SGGGRLGIYSMDKEKLI  296 (433)
T ss_dssp             SCCEEEEEEETTTTEEE
T ss_pred             cCCCeEEEEECCCCcEE
Confidence             4789999999887643

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.28  E-value=1.2e-10  Score=67.45  Aligned_cols=81  Identities=16%  Similarity=0.154  Sum_probs=66.5

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeC--CCCCC------CCCEEEEEEcc----CCCEEEEecC
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNL--NSKLC------DSAVRSISFCS----KQRTLISGGD   68 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~--~~~~~------~~~v~~~~~~~----~~~~~~~~~~   68 (84)
                      +++++.+++.. .. +..++++|+++++++++.++.+.+||+  .+...      ...+.+++|+|    +++.+++++.
T Consensus       168 t~~~~~~i~~g-~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~  245 (543)
T 1nir_A          168 SKKIVKVIDTG-YA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY  245 (543)
T ss_dssp             TCCEEEEEECS-TT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE
T ss_pred             CceEEEEEecC-cc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEc
Confidence            46777888744 33 789999999999999999999999999  55433      45689999999    9999988874


Q ss_pred             -CCcEEEEeCCCCeec
Q psy16880         69 -DGSICMWNLNSKLCD   83 (84)
Q Consensus        69 -~~~i~~~~~~~~~~~   83 (84)
                       ++.+.+||..+.+++
T Consensus       246 ~~~~v~v~D~~t~~~~  261 (543)
T 1nir_A          246 WPPQFAIMDGETLEPK  261 (543)
T ss_dssp             ESSEEEEEETTTCCEE
T ss_pred             cCCeEEEEeccccccc
Confidence             899999999887654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.11  E-value=1.1e-09  Score=63.53  Aligned_cols=81  Identities=9%  Similarity=0.044  Sum_probs=67.1

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCC-------CCcEEEEeCCCCCC----------------CCCEEEEEEcc
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGD-------DGSICMWNLNSKLC----------------DSAVRSISFCS   58 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------~~~~~~~d~~~~~~----------------~~~v~~~~~~~   58 (84)
                      .+++++++++ .+.+..++++|+++.|.+++.       +..+.+||+.+...                ...+..+.|+|
T Consensus       410 ~~~v~~l~~~-g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  488 (543)
T 1nir_A          410 WKKVAELQGQ-GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK  488 (543)
T ss_dssp             TSEEEEEECS-CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS
T ss_pred             CeEEEEEEcC-CCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC
Confidence            5788888888 777889999999999999872       66999999986644                34688999999


Q ss_pred             CCCEEEEec-----CCCcEEEEeCCCCeec
Q psy16880         59 KQRTLISGG-----DDGSICMWNLNSKLCD   83 (84)
Q Consensus        59 ~~~~~~~~~-----~~~~i~~~~~~~~~~~   83 (84)
                      +++.+..+.     .++.|.+||..+++++
T Consensus       489 ~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~  518 (543)
T 1nir_A          489 RGDEVWFSVWNGKNDSSALVVVDDKTLKLK  518 (543)
T ss_dssp             SSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred             CCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence            999887652     4799999999998875

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.10  E-value=7.8e-09  Score=58.05  Aligned_cols=74  Identities=15%  Similarity=0.166  Sum_probs=56.6

Q ss_pred             EeccCCCcCEEEEEEccCCCEEE-EeCCCC--cEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecC-CC--cEEE
Q psy16880          7 TFVHSNNSAVRSISFCSKQHTLI-SGGDDG--SICMWNLNSKLC------DSAVRSISFCSKQRTLISGGD-DG--SICM   74 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~~~~~l~-~~~~~~--~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~-~~--~i~~   74 (84)
                      .+..+ .+.+.+++|+|+++.++ +++.++  .+.+||+.+...      ...+..++|+|+++.++.++. ++  .|.+
T Consensus       217 ~l~~~-~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~  295 (415)
T 2hqs_A          217 QVASF-PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK  295 (415)
T ss_dssp             EEECC-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             EeecC-CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEE
Confidence            34555 77899999999999777 666555  488899876554      557899999999998887765 34  5777


Q ss_pred             EeCCCCe
Q psy16880         75 WNLNSKL   81 (84)
Q Consensus        75 ~~~~~~~   81 (84)
                      ||+.+++
T Consensus       296 ~d~~~~~  302 (415)
T 2hqs_A          296 VNINGGA  302 (415)
T ss_dssp             EETTSSC
T ss_pred             EECCCCC
Confidence            7887654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.09  E-value=2.6e-09  Score=57.48  Aligned_cols=69  Identities=10%  Similarity=0.131  Sum_probs=57.6

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      ...+..++|+|+++.++++  ++.+.+||+.+...      ...+.+++|+|+++.+++++.++.|.+||+.+++.+
T Consensus       240 ~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~  314 (337)
T 1pby_B          240 DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             CCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence            3456789999999988887  68999999976654      456789999999998888888999999999887653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.05  E-value=3.4e-09  Score=65.06  Aligned_cols=74  Identities=11%  Similarity=0.147  Sum_probs=61.5

Q ss_pred             EeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCC---------
Q psy16880          7 TFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDG---------   70 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~---------   70 (84)
                      .+..+ ...+..++|+|+++.++.++.++.+.+||+.++..       ...+..++|+|+++.++.++.++         
T Consensus       373 ~l~~~-~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~  451 (1045)
T 1k32_A          373 KFEEN-LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM  451 (1045)
T ss_dssp             ECCCC-CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred             EecCC-ccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCC
Confidence            44455 67899999999999999999999999999987654       44678899999999898776543         


Q ss_pred             -cEEEEeCCCCe
Q psy16880         71 -SICMWNLNSKL   81 (84)
Q Consensus        71 -~i~~~~~~~~~   81 (84)
                       .+.+||+.+++
T Consensus       452 ~~i~l~d~~~g~  463 (1045)
T 1k32_A          452 QAIHVYDMEGRK  463 (1045)
T ss_dssp             EEEEEEETTTTE
T ss_pred             CeEEEEECCCCc
Confidence             89999998765

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.02  E-value=6.1e-09  Score=61.57  Aligned_cols=65  Identities=9%  Similarity=0.133  Sum_probs=55.2

Q ss_pred             EEEEEEccCCCEEEEeCCCCcEEEEeCCCC---CC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880         16 VRSISFCSKQHTLISGGDDGSICMWNLNSK---LC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        16 v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~---~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                      +..++|+|+++.++.++. +.+.+||+...   ..      ...+..++|+|+++.++.++ ++.|.+||+.+++.
T Consensus       111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~  184 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ  184 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE
T ss_pred             cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE
Confidence            678999999999988876 89999999876   43      46799999999999998886 56899999987654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.01  E-value=4e-09  Score=61.05  Aligned_cols=66  Identities=11%  Similarity=-0.072  Sum_probs=54.9

Q ss_pred             EEEEEccCCCEEEEeCCC----CcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCC--cEEEEeCCCCee
Q psy16880         17 RSISFCSKQHTLISGGDD----GSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDG--SICMWNLNSKLC   82 (84)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~----~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~   82 (84)
                      .+++|+|+|+.++.++.+    ..+.+||+.++..      ...+...+|+|+++.++++..++  .|.+||+.+++.
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~  230 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSV  230 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcE
Confidence            688999999999977666    6788999876655      45689999999999999877788  899999887654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.99  E-value=1.3e-08  Score=55.26  Aligned_cols=81  Identities=7%  Similarity=0.067  Sum_probs=61.9

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----------CCCEEEEEEccCCCEEEEecC-C
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----------DSAVRSISFCSKQRTLISGGD-D   69 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~-~   69 (84)
                      ++.+..+..+ ...+..++|+|+++.++.++.++.+.+||..+...           ...+..++|+|+++.++.++. +
T Consensus       174 ~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~  252 (353)
T 3vgz_A          174 IKLKTAIQNT-GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA  252 (353)
T ss_dssp             TEEEEEECCC-CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS
T ss_pred             CceEEEecCC-CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC
Confidence            4555666544 44567889999999999999999999999876654           224677999999987766554 5


Q ss_pred             CcEEEEeCCCCeec
Q psy16880         70 GSICMWNLNSKLCD   83 (84)
Q Consensus        70 ~~i~~~~~~~~~~~   83 (84)
                      +.+.+||..+++.+
T Consensus       253 ~~v~~~d~~~~~~~  266 (353)
T 3vgz_A          253 AEVLVVDTRNGNIL  266 (353)
T ss_dssp             SEEEEEETTTCCEE
T ss_pred             CEEEEEECCCCcEE
Confidence            89999999877653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.97  E-value=1.3e-08  Score=55.02  Aligned_cols=68  Identities=12%  Similarity=0.112  Sum_probs=56.7

Q ss_pred             cCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         14 SAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        14 ~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      ..+..++++| +++.++.+  ++.+.+||+.+...      ...+.+++|+|+++.+++++.++.|.+||..+++.+
T Consensus       255 ~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~  329 (349)
T 1jmx_B          255 ELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV  329 (349)
T ss_dssp             SCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             CcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEecccccee
Confidence            4567889999 99998888  78999999987654      455789999999988888888899999999887754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.97  E-value=2.3e-08  Score=53.95  Aligned_cols=81  Identities=4%  Similarity=-0.024  Sum_probs=58.7

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEe-CCCCcEEEEeCCCCCC-------CCCEEE-EEEccCCCEEEEecCCC-
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISG-GDDGSICMWNLNSKLC-------DSAVRS-ISFCSKQRTLISGGDDG-   70 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~~~~~~d~~~~~~-------~~~v~~-~~~~~~~~~~~~~~~~~-   70 (84)
                      +|+.+..+..+ ...+ .++|+|+++.++.+ ..++.+.+||..+...       ...... ++|+|+++.+++...++ 
T Consensus        29 ~~~~~~~~~~~-~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  106 (331)
T 3u4y_A           29 TLEILNQITLG-YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNH  106 (331)
T ss_dssp             TCCEEEEEECC-CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSS
T ss_pred             ccceeeeEEcc-CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCC
Confidence            35666666655 5556 99999999865544 5588999999976653       333444 99999999888555443 


Q ss_pred             --cEEEEeCCCCeec
Q psy16880         71 --SICMWNLNSKLCD   83 (84)
Q Consensus        71 --~i~~~~~~~~~~~   83 (84)
                        .|.+||+.+++.+
T Consensus       107 ~~~i~v~d~~~~~~~  121 (331)
T 3u4y_A          107 PFNMQSYSFLKNKFI  121 (331)
T ss_dssp             SCEEEEEETTTTEEE
T ss_pred             cccEEEEECCCCCeE
Confidence              8999999887653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.95  E-value=3.2e-09  Score=62.58  Aligned_cols=79  Identities=8%  Similarity=-0.026  Sum_probs=60.3

Q ss_pred             CceEEEeccCCCc---CEEEEEEccCCCEEEEeCCC---------CcEEEEeCCCCCC---------CCCEEEEEEccCC
Q psy16880          2 GSIIHTFVHSNNS---AVRSISFCSKQHTLISGGDD---------GSICMWNLNSKLC---------DSAVRSISFCSKQ   60 (84)
Q Consensus         2 g~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~~---------~~~~~~d~~~~~~---------~~~v~~~~~~~~~   60 (84)
                      |+....+..+ ..   .|..++|+|+++.+++++.+         +.+.+||+.++..         ...+..++|+|++
T Consensus        47 g~~~~~~~~~-~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG  125 (723)
T 1xfd_A           47 NTSTVLIEGK-KIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG  125 (723)
T ss_dssp             CCCEEEECTT-TTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSST
T ss_pred             CcEEEEeccc-cccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCC
Confidence            4555555555 43   48899999999999888654         6788999986653         1237889999999


Q ss_pred             CEEEEecCCCcEEEEeCCCCee
Q psy16880         61 RTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        61 ~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                      +.++.++. +.|.+|+..+++.
T Consensus       126 ~~la~~~~-~~i~~~~~~~g~~  146 (723)
T 1xfd_A          126 QQLIFIFE-NNIYYCAHVGKQA  146 (723)
T ss_dssp             TCEEEEET-TEEEEESSSSSCC
T ss_pred             CEEEEEEC-CeEEEEECCCCce
Confidence            99988875 7899999877653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.94  E-value=1.7e-09  Score=63.78  Aligned_cols=79  Identities=6%  Similarity=0.089  Sum_probs=60.1

Q ss_pred             CceEEEeccCCCc---CEEEEEEccCCCEEEEeCC---------CCcEEEEeCCCCCC------CCCEEEEEEccCCCEE
Q psy16880          2 GSIIHTFVHSNNS---AVRSISFCSKQHTLISGGD---------DGSICMWNLNSKLC------DSAVRSISFCSKQRTL   63 (84)
Q Consensus         2 g~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~   63 (84)
                      |+....+..+ ..   .+..++|+|+|+.++.++.         ++.+.+||+.++..      ...+..++|+|+++.+
T Consensus        46 g~~~~~~~~~-~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~l  124 (719)
T 1z68_A           46 GQSYTILSNR-TMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKL  124 (719)
T ss_dssp             CCEEEEECHH-HHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCE
T ss_pred             CcEEEEEccc-cccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEE
Confidence            4444444443 32   3789999999999988866         68999999876543      3567889999999999


Q ss_pred             EEecCCCcEEEEeCCCCee
Q psy16880         64 ISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        64 ~~~~~~~~i~~~~~~~~~~   82 (84)
                      +.+. ++.|++|+..+++.
T Consensus       125 a~~~-~~~i~~~~~~~g~~  142 (719)
T 1z68_A          125 AYVY-QNNIYLKQRPGDPP  142 (719)
T ss_dssp             EEEE-TTEEEEESSTTSCC
T ss_pred             EEEE-CCeEEEEeCCCCCc
Confidence            8885 78999999876553

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.92  E-value=3e-08  Score=52.29  Aligned_cols=72  Identities=6%  Similarity=0.047  Sum_probs=54.4

Q ss_pred             EeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCC-CCC--------CCCEEEEEEccCCCEEEEecC--CCcEEEE
Q psy16880          7 TFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNS-KLC--------DSAVRSISFCSKQRTLISGGD--DGSICMW   75 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~-~~~--------~~~v~~~~~~~~~~~~~~~~~--~~~i~~~   75 (84)
                      .+..+ ...+.+++|+|+++.+++++ ++.+.+||+.. ...        ...+.+++|+|+++.+++++.  ++...+|
T Consensus        36 ~~~~~-~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~  113 (297)
T 2ojh_A           36 VVWQT-PELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIY  113 (297)
T ss_dssp             EEEEE-SSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEE
T ss_pred             eeccC-CcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEE
Confidence            34455 78899999999999998876 77999999987 544        256788999999999998873  3444444


Q ss_pred             --eCCCC
Q psy16880         76 --NLNSK   80 (84)
Q Consensus        76 --~~~~~   80 (84)
                        +..++
T Consensus       114 ~~~~~~~  120 (297)
T 2ojh_A          114 LLPSTGG  120 (297)
T ss_dssp             EEETTCC
T ss_pred             EEECCCC
Confidence              54443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.90  E-value=3.7e-08  Score=53.45  Aligned_cols=68  Identities=12%  Similarity=0.115  Sum_probs=55.6

Q ss_pred             EEEEEEccCCCEEEEeC--CCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         16 VRSISFCSKQHTLISGG--DDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        16 v~~~~~~~~~~~l~~~~--~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      +..+.|+|+++.++.+.  .++.+.+||..+...       ...+..++|+|+++.++.++.++.+.+||..+++.+
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~  219 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKIL  219 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEE
T ss_pred             CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEE
Confidence            67899999998766654  578899999976655       234788999999999998888999999999887653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.89  E-value=2.5e-08  Score=52.58  Aligned_cols=75  Identities=5%  Similarity=0.072  Sum_probs=56.2

Q ss_pred             EEeccCCCcCEEEEEEccCCCEEEEeC-CCCcEEEEeCCC-CCC-------CCCEEEEEEccCCCEEEEecCC-------
Q psy16880          6 HTFVHSNNSAVRSISFCSKQHTLISGG-DDGSICMWNLNS-KLC-------DSAVRSISFCSKQRTLISGGDD-------   69 (84)
Q Consensus         6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~~~~~~d~~~-~~~-------~~~v~~~~~~~~~~~~~~~~~~-------   69 (84)
                      ..+..+ ...+..++|+|+++.++.++ .++.+.+|++.. ...       ...+..++|+|+++.++.++.+       
T Consensus       166 ~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~  244 (297)
T 2ojh_A          166 TRLTHG-EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHP  244 (297)
T ss_dssp             EECCCS-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCC
T ss_pred             eEcccC-CCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCccc
Confidence            344455 67889999999999776554 588889998752 222       3467889999999988877654       


Q ss_pred             ----CcEEEEeCCCCe
Q psy16880         70 ----GSICMWNLNSKL   81 (84)
Q Consensus        70 ----~~i~~~~~~~~~   81 (84)
                          ..+.+||+.+++
T Consensus       245 ~~~~~~l~~~d~~~~~  260 (297)
T 2ojh_A          245 RDLDVRVQLMDMDGGN  260 (297)
T ss_dssp             SSEEEEEEEEETTSCS
T ss_pred             ccCceEEEEEecCCCC
Confidence                469999988764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.82  E-value=1.3e-08  Score=58.94  Aligned_cols=70  Identities=9%  Similarity=0.067  Sum_probs=55.9

Q ss_pred             EeccCCCcCEEEEEEccCCCEEEEeCCCC--cEEEEeCCCCCC------CCCEEEEE--------EccCCCEEEEecCCC
Q psy16880          7 TFVHSNNSAVRSISFCSKQHTLISGGDDG--SICMWNLNSKLC------DSAVRSIS--------FCSKQRTLISGGDDG   70 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--~~~~~d~~~~~~------~~~v~~~~--------~~~~~~~~~~~~~~~   70 (84)
                      .+..+ .+.+..++|+|+|+.++++..++  .+.+||+.++..      ...+..+.        |+|++..+++++.++
T Consensus       189 ~l~~~-~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g  267 (582)
T 3o4h_A          189 VFDSG-EGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREG  267 (582)
T ss_dssp             EECCS-SCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETT
T ss_pred             EeecC-CCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCC
Confidence            45566 77789999999999999888888  888999876543      22233344        999998888898999


Q ss_pred             cEEEEeC
Q psy16880         71 SICMWNL   77 (84)
Q Consensus        71 ~i~~~~~   77 (84)
                      .+++|++
T Consensus       268 ~~~l~~~  274 (582)
T 3o4h_A          268 RSAVFID  274 (582)
T ss_dssp             EEEEEET
T ss_pred             cEEEEEE
Confidence            9999998

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.82  E-value=3.3e-08  Score=53.33  Aligned_cols=66  Identities=12%  Similarity=0.171  Sum_probs=52.2

Q ss_pred             CcCEEEEEEccCCCEEEEeCCC-CcEEEEeCC--CCCC--------CCCEEEEEEccCCCEEEEecC-CCcEEEEeCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDD-GSICMWNLN--SKLC--------DSAVRSISFCSKQRTLISGGD-DGSICMWNLN   78 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~-~~~~~~d~~--~~~~--------~~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~~   78 (84)
                      ...+..++|+|+++.+++++.+ +.+.+|++.  ....        ...+..++|+|+++.+++++. ++.|.+|++.
T Consensus        37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~  114 (343)
T 1ri6_A           37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE  114 (343)
T ss_dssp             SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence            5667889999999988777765 899999997  3332        347889999999997766554 7889999983

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.82  E-value=5.1e-08  Score=52.48  Aligned_cols=81  Identities=5%  Similarity=0.015  Sum_probs=59.2

Q ss_pred             CceEEEeccCCCc-CEEEEEEccCCCEE-EEeCCCCcEEEEeCCCCCC------CC------CEEEEEEccCCCEEEEec
Q psy16880          2 GSIIHTFVHSNNS-AVRSISFCSKQHTL-ISGGDDGSICMWNLNSKLC------DS------AVRSISFCSKQRTLISGG   67 (84)
Q Consensus         2 g~~~~~~~~~~~~-~v~~~~~~~~~~~l-~~~~~~~~~~~~d~~~~~~------~~------~v~~~~~~~~~~~~~~~~   67 (84)
                      ++.+..+...+.. .+..++|+|+++.+ +++..++.+.+||..+...      ..      .+..++|+|+++.++++.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  100 (337)
T 1pby_B           21 MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYE  100 (337)
T ss_dssp             TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEE
T ss_pred             CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEe
Confidence            4555555533011 46789999999755 5667788999999976654      22      567899999998888775


Q ss_pred             ------------CCCcEEEEeCCCCee
Q psy16880         68 ------------DDGSICMWNLNSKLC   82 (84)
Q Consensus        68 ------------~~~~i~~~~~~~~~~   82 (84)
                                  .++.|.+||+.+++.
T Consensus       101 ~~~~~~~~~~~~~~~~i~v~d~~~~~~  127 (337)
T 1pby_B          101 SPVRLELTHFEVQPTRVALYDAETLSR  127 (337)
T ss_dssp             EEEEECSSCEEECCCEEEEEETTTTEE
T ss_pred             cccccccccccccCceEEEEECCCCcE
Confidence                        468999999987764

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.82  E-value=2.8e-08  Score=54.71  Aligned_cols=81  Identities=15%  Similarity=0.231  Sum_probs=59.1

Q ss_pred             CCceEEEeccCCCcCEEE-----EEEccCCCEEEEeCC-CC--cEEEEeCCCCCC-------CCCEEEEEEccCCCEEEE
Q psy16880          1 DGSIIHTFVHSNNSAVRS-----ISFCSKQHTLISGGD-DG--SICMWNLNSKLC-------DSAVRSISFCSKQRTLIS   65 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~-~~--~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~   65 (84)
                      +|..+..+..+ ......     .+|+|+++.++..+. ++  .+.+||+.+...       ...+....|+|+++.++.
T Consensus        19 ~g~~~~~lt~~-~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~   97 (388)
T 3pe7_A           19 TGAQVTRLTPP-DVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFY   97 (388)
T ss_dssp             TCCEEEECSCT-TSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEE
T ss_pred             CCcceEEecCC-cccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEE
Confidence            35566677666 555554     789999998887766 56  477778776544       222335689999999999


Q ss_pred             ecCCCcEEEEeCCCCee
Q psy16880         66 GGDDGSICMWNLNSKLC   82 (84)
Q Consensus        66 ~~~~~~i~~~~~~~~~~   82 (84)
                      +..++.+.+||+.+++.
T Consensus        98 ~~~~~~l~~~d~~~g~~  114 (388)
T 3pe7_A           98 VKDGRNLMRVDLATLEE  114 (388)
T ss_dssp             EETTTEEEEEETTTCCE
T ss_pred             EeCCCeEEEEECCCCcc
Confidence            98888999999987653

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.80  E-value=3.1e-08  Score=58.63  Aligned_cols=66  Identities=8%  Similarity=0.178  Sum_probs=55.3

Q ss_pred             cCEEEEEEccCCCEEEEeCC-CC-----cEEEEeCCCCCC-------C------------------------CCEEEEEE
Q psy16880         14 SAVRSISFCSKQHTLISGGD-DG-----SICMWNLNSKLC-------D------------------------SAVRSISF   56 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~~~~~-~~-----~~~~~d~~~~~~-------~------------------------~~v~~~~~   56 (84)
                      ..+..++|+|+|+.+++++. ++     .+.+||+.++..       .                        ..+..++|
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  116 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW  116 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred             CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence            45789999999999999887 77     899999987654       1                        12688999


Q ss_pred             ccCCCEEEEecCCCcEEEEeCCCC
Q psy16880         57 CSKQRTLISGGDDGSICMWNLNSK   80 (84)
Q Consensus        57 ~~~~~~~~~~~~~~~i~~~~~~~~   80 (84)
                      +|+++.+++++. +.|.+||+.++
T Consensus       117 SpDg~~l~~~~~-~~i~~~d~~~~  139 (741)
T 2ecf_A          117 SPDAQRLLFPLG-GELYLYDLKQE  139 (741)
T ss_dssp             CTTSSEEEEEET-TEEEEEESSSC
T ss_pred             CCCCCEEEEEeC-CcEEEEECCCC
Confidence            999999988875 89999999876

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.77  E-value=6.4e-08  Score=52.36  Aligned_cols=79  Identities=9%  Similarity=0.134  Sum_probs=58.0

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEE-EEeCCCCcEEEEeCCCCCC------CC-------CEEEEEEccCCCEEEEec
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTL-ISGGDDGSICMWNLNSKLC------DS-------AVRSISFCSKQRTLISGG   67 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~~~~~~~d~~~~~~------~~-------~v~~~~~~~~~~~~~~~~   67 (84)
                      ++.+..+.......+..++|+|+++.+ ++...++.+.+||+.+...      ..       .+..++|+|+++.+++++
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~  110 (349)
T 1jmx_B           31 DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATV  110 (349)
T ss_dssp             TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEE
T ss_pred             CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEc
Confidence            455666654411246788999999854 5666788999999976654      11       167899999999888887


Q ss_pred             CC------------CcEEEEeCCCC
Q psy16880         68 DD------------GSICMWNLNSK   80 (84)
Q Consensus        68 ~~------------~~i~~~~~~~~   80 (84)
                      .+            +.|.+||+.++
T Consensus       111 ~~~~~~~~~~~~~~~~i~~~d~~~~  135 (349)
T 1jmx_B          111 NPTQRLNDHYVVKPPRLEVFSTADG  135 (349)
T ss_dssp             EEEEECSSCEEECCCEEEEEEGGGG
T ss_pred             ccccccccccccCCCeEEEEECCCc
Confidence            54            89999998764

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.77  E-value=2.3e-07  Score=50.09  Aligned_cols=74  Identities=5%  Similarity=0.127  Sum_probs=53.9

Q ss_pred             EEEeccCCCcCEEEEEEccCCCEEEEeCCCC---cEEEEeCCCCCC------CCCEEEEEEccCCCEEEE-ecCCCc-EE
Q psy16880          5 IHTFVHSNNSAVRSISFCSKQHTLISGGDDG---SICMWNLNSKLC------DSAVRSISFCSKQRTLIS-GGDDGS-IC   73 (84)
Q Consensus         5 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~-~~~~~~-i~   73 (84)
                      ...+..+ ..+..+++|+|+++.+++...++   .+.+||+.....      ......++|+|+++.+++ ...++. +.
T Consensus        76 ~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~  154 (331)
T 3u4y_A           76 VVAIQEG-QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVR  154 (331)
T ss_dssp             EEEEEEC-SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEE
T ss_pred             EEecccC-CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEE
Confidence            4445444 45554489999999888665553   899999987655      456789999999975554 455578 99


Q ss_pred             EEeCCC
Q psy16880         74 MWNLNS   79 (84)
Q Consensus        74 ~~~~~~   79 (84)
                      +|++..
T Consensus       155 ~~~~~~  160 (331)
T 3u4y_A          155 RFKIDA  160 (331)
T ss_dssp             EEEECT
T ss_pred             EEEECC
Confidence            998764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.76  E-value=3.5e-07  Score=49.82  Aligned_cols=66  Identities=8%  Similarity=0.167  Sum_probs=51.2

Q ss_pred             CcCEEEEEEccCCCEEEEeC-CCCcEEEEeCCCCCC---------C----------CCEEEEEEccCCCEEEEecCCCcE
Q psy16880         13 NSAVRSISFCSKQHTLISGG-DDGSICMWNLNSKLC---------D----------SAVRSISFCSKQRTLISGGDDGSI   72 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~-~~~~~~~~d~~~~~~---------~----------~~v~~~~~~~~~~~~~~~~~~~~i   72 (84)
                      ...+..++|+|+++.+++++ .++.+.+||+.....         .          ..+..++|+|+++.+++...++.+
T Consensus        85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v  164 (347)
T 3hfq_A           85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKV  164 (347)
T ss_dssp             SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEE
T ss_pred             CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEE
Confidence            55667899999999777776 778999999963211         1          137789999999966666668899


Q ss_pred             EEEeCC
Q psy16880         73 CMWNLN   78 (84)
Q Consensus        73 ~~~~~~   78 (84)
                      .+|++.
T Consensus       165 ~~~~~~  170 (347)
T 3hfq_A          165 YVYNVS  170 (347)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999987

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.75  E-value=7.9e-08  Score=56.70  Aligned_cols=65  Identities=8%  Similarity=0.154  Sum_probs=52.7

Q ss_pred             EEEEEEccCCCEEEEeC---------------------------------CCCcEEEEeCCCCCC---------CCCEEE
Q psy16880         16 VRSISFCSKQHTLISGG---------------------------------DDGSICMWNLNSKLC---------DSAVRS   53 (84)
Q Consensus        16 v~~~~~~~~~~~l~~~~---------------------------------~~~~~~~~d~~~~~~---------~~~v~~   53 (84)
                      +..+.|+|+++.|+.++                                 .+..+.+||+.+...         ...+..
T Consensus       183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~  262 (706)
T 2z3z_A          183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN  262 (706)
T ss_dssp             CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE
T ss_pred             CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee
Confidence            47899999999998876                                 446788999976543         245889


Q ss_pred             EEEccCCCEEEEecCCC-----cEEEEeCCCC
Q psy16880         54 ISFCSKQRTLISGGDDG-----SICMWNLNSK   80 (84)
Q Consensus        54 ~~~~~~~~~~~~~~~~~-----~i~~~~~~~~   80 (84)
                      ++|+|+++.+++++.++     .+.+||..++
T Consensus       263 ~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g  294 (706)
T 2z3z_A          263 LSWSPDENILYVAEVNRAQNECKVNAYDAETG  294 (706)
T ss_dssp             EEECTTSSEEEEEEECTTSCEEEEEEEETTTC
T ss_pred             EEEECCCCEEEEEEeCCCCCeeEEEEEECCCC
Confidence            99999999888876654     8999999887

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.74  E-value=3.8e-08  Score=53.10  Aligned_cols=66  Identities=17%  Similarity=0.280  Sum_probs=51.4

Q ss_pred             cCEEEEEEccCCCEEEEe-CCCCcEEEEeCCCC---CC------CCCEEEEEEccCCCEEEEec-CCCcEEEEeCCC
Q psy16880         14 SAVRSISFCSKQHTLISG-GDDGSICMWNLNSK---LC------DSAVRSISFCSKQRTLISGG-DDGSICMWNLNS   79 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~~~-~~~~~~~~~d~~~~---~~------~~~v~~~~~~~~~~~~~~~~-~~~~i~~~~~~~   79 (84)
                      ..+..++|+|+++.++.+ ..++.+.+||+...   ..      ...+..++|+|+++.+++++ .++.+.+|++.+
T Consensus        84 ~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~  160 (343)
T 1ri6_A           84 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD  160 (343)
T ss_dssp             SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence            367889999999977555 45888999999422   11      44688899999998777766 789999999876

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.72  E-value=2.2e-07  Score=50.62  Aligned_cols=68  Identities=10%  Similarity=0.191  Sum_probs=51.2

Q ss_pred             CEEEEEEccCCCEE-EEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecC-CCcEEEE--eCCCC
Q psy16880         15 AVRSISFCSKQHTL-ISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGD-DGSICMW--NLNSK   80 (84)
Q Consensus        15 ~v~~~~~~~~~~~l-~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~-~~~i~~~--~~~~~   80 (84)
                      .+..++|+|+++.+ ++...++.+.+||+.....          ...+..++|+|+++.++++.. ++.+.+|  |..++
T Consensus       241 ~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg  320 (347)
T 3hfq_A          241 GAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSG  320 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             cceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCC
Confidence            47789999999976 5566688999999863211          335789999999998877765 4889999  55555


Q ss_pred             ee
Q psy16880         81 LC   82 (84)
Q Consensus        81 ~~   82 (84)
                      +.
T Consensus       321 ~l  322 (347)
T 3hfq_A          321 KL  322 (347)
T ss_dssp             CE
T ss_pred             eE
Confidence            43

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.68  E-value=1.1e-07  Score=56.74  Aligned_cols=78  Identities=10%  Similarity=0.057  Sum_probs=58.6

Q ss_pred             CceEEEeccCCCcC-----EEEEEEccCCCEEEEeCCC---------CcEEEEeCCCCCC------CCCEEEEEEccCCC
Q psy16880          2 GSIIHTFVHSNNSA-----VRSISFCSKQHTLISGGDD---------GSICMWNLNSKLC------DSAVRSISFCSKQR   61 (84)
Q Consensus         2 g~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~~---------~~~~~~d~~~~~~------~~~v~~~~~~~~~~   61 (84)
                      |+....++++ ...     ...++|+|+++.++.++.+         +.+.+||+.++..      ...+...+|+|+++
T Consensus        46 ~~~~~~~~~~-~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~  124 (740)
T 4a5s_A           46 GNSSVFLENS-TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGH  124 (740)
T ss_dssp             CCEEEEECTT-TTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTT
T ss_pred             CceEEEEech-hhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCC
Confidence            5555556665 322     2347899999999888765         5667999987654      45789999999999


Q ss_pred             EEEEecCCCcEEEEeCCCCe
Q psy16880         62 TLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        62 ~~~~~~~~~~i~~~~~~~~~   81 (84)
                      .++.+. ++.|.+|+..+++
T Consensus       125 ~la~~~-~~~i~~~~~~~~~  143 (740)
T 4a5s_A          125 KLAYVW-NNDIYVKIEPNLP  143 (740)
T ss_dssp             CEEEEE-TTEEEEESSTTSC
T ss_pred             EEEEEE-CCeEEEEECCCCc
Confidence            998884 6889999987654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.68  E-value=7.6e-07  Score=52.25  Aligned_cols=80  Identities=19%  Similarity=0.130  Sum_probs=61.7

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCC--CCCC------CCCEEEEEEc----cCCCEEEEecC-
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLN--SKLC------DSAVRSISFC----SKQRTLISGGD-   68 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~--~~~~------~~~v~~~~~~----~~~~~~~~~~~-   68 (84)
                      ++.+.++...  ..+..+.++|+++++++++.++.+.+||+.  +...      ......++|+    |++++++++.. 
T Consensus       187 ~~v~~~i~~g--~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~  264 (567)
T 1qks_A          187 YEIKTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYW  264 (567)
T ss_dssp             CCEEEEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred             CeEEEEEeCC--CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEcc
Confidence            4566666543  345689999999999999999999999995  4333      4567899999    69988877654 


Q ss_pred             CCcEEEEeCCCCeec
Q psy16880         69 DGSICMWNLNSKLCD   83 (84)
Q Consensus        69 ~~~i~~~~~~~~~~~   83 (84)
                      ++.+.++|..+.+.+
T Consensus       265 ~~~v~ViD~~t~~~~  279 (567)
T 1qks_A          265 PPQYVIMDGETLEPK  279 (567)
T ss_dssp             TTEEEEEETTTCCEE
T ss_pred             CCeEEEEECCCCcEE
Confidence            588999998877654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.67  E-value=7.2e-07  Score=48.87  Aligned_cols=66  Identities=11%  Similarity=0.199  Sum_probs=50.6

Q ss_pred             CcCEEEEEEccCCCEEEEeC-CCCcEEEEeCCCCCC------------CCCEEEEEEccCCCEEEEecC--CCcEEEEeC
Q psy16880         13 NSAVRSISFCSKQHTLISGG-DDGSICMWNLNSKLC------------DSAVRSISFCSKQRTLISGGD--DGSICMWNL   77 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~-~~~~~~~~d~~~~~~------------~~~v~~~~~~~~~~~~~~~~~--~~~i~~~~~   77 (84)
                      ......++|+|+++.++.++ .++.+.+||+.....            ......++|+|+++.++++..  ++.+.+|++
T Consensus       210 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~  289 (361)
T 3scy_A          210 GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKV  289 (361)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEE
T ss_pred             CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEE
Confidence            34567899999999776555 688999999875432            234679999999998866655  488999988


Q ss_pred             C
Q psy16880         78 N   78 (84)
Q Consensus        78 ~   78 (84)
                      .
T Consensus       290 ~  290 (361)
T 3scy_A          290 D  290 (361)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.65  E-value=2.6e-06  Score=46.16  Aligned_cols=77  Identities=14%  Similarity=0.110  Sum_probs=59.1

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCC----CcE
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDD----GSI   72 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~----~~i   72 (84)
                      ....+..+ ...+..++|++++.+++++..++.+.+||......       ...+.+++++|+++++++...+    +.|
T Consensus        36 ~~~~~~~~-~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i  114 (333)
T 2dg1_A           36 PWLEISKK-GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGI  114 (333)
T ss_dssp             EEEEEESS-CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEE
T ss_pred             eeEEEecc-CccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceE
Confidence            34445555 56678999999999888888889999999876543       3578999999999877776555    579


Q ss_pred             EEEeCCCCe
Q psy16880         73 CMWNLNSKL   81 (84)
Q Consensus        73 ~~~~~~~~~   81 (84)
                      .+||..+++
T Consensus       115 ~~~d~~~~~  123 (333)
T 2dg1_A          115 FAATENGDN  123 (333)
T ss_dssp             EEECTTSCS
T ss_pred             EEEeCCCCE
Confidence            999877654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.65  E-value=2.4e-07  Score=57.13  Aligned_cols=76  Identities=8%  Similarity=-0.005  Sum_probs=59.1

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCC----------CcEEEEeCCCCCC------CCCEEEEEEccCCCEEEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDD----------GSICMWNLNSKLC------DSAVRSISFCSKQRTLIS   65 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~----------~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~   65 (84)
                      |+....++++ .+.+..++|+|+++.++.++.+          ..+.+||+.....      ...+..++|+|+++.++.
T Consensus       410 g~~~~~~~~~-~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~  488 (1045)
T 1k32_A          410 GKPTVIERSR-EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYY  488 (1045)
T ss_dssp             CCEEEEEECS-SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEE
T ss_pred             CceEEeccCC-CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEE
Confidence            4555555566 7888899999999988877654          3899999976544      445788999999999998


Q ss_pred             ecCCCcEEEEeCC
Q psy16880         66 GGDDGSICMWNLN   78 (84)
Q Consensus        66 ~~~~~~i~~~~~~   78 (84)
                      .+.++...+|+..
T Consensus       489 ~s~~~~~~~~~~~  501 (1045)
T 1k32_A          489 LSYRSLDPSPDRV  501 (1045)
T ss_dssp             EESCCCCCEECSS
T ss_pred             EecccCCcCcchh
Confidence            8887777777653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.65  E-value=2.2e-06  Score=45.61  Aligned_cols=80  Identities=8%  Similarity=0.192  Sum_probs=57.4

Q ss_pred             CceEEEeccCC-CcCEEEEEEccCCCEEEEeCCCC-cEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCc
Q psy16880          2 GSIIHTFVHSN-NSAVRSISFCSKQHTLISGGDDG-SICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGS   71 (84)
Q Consensus         2 g~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~-~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~   71 (84)
                      |+.+..+.... ...+..+++++++..+++...++ .+.+||......        ...+.++++.|+++++++ +.++.
T Consensus       194 g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~  272 (286)
T 1q7f_A          194 GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYR  272 (286)
T ss_dssp             CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTE
T ss_pred             CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCe
Confidence            34444553320 25678999999999888887775 999999654322        234779999999986666 56899


Q ss_pred             EEEEeCCCCee
Q psy16880         72 ICMWNLNSKLC   82 (84)
Q Consensus        72 i~~~~~~~~~~   82 (84)
                      |.+|++....+
T Consensus       273 v~v~~~~~~~p  283 (286)
T 1q7f_A          273 LYIYRYVQLAP  283 (286)
T ss_dssp             EEEEECSCCCC
T ss_pred             EEEEEcccccc
Confidence            99999876544

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.65  E-value=1.1e-07  Score=52.71  Aligned_cols=79  Identities=5%  Similarity=0.069  Sum_probs=58.8

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeC----------CCCcEEEEeCCCCCC------C-------CCEEEEEEcc
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGG----------DDGSICMWNLNSKLC------D-------SAVRSISFCS   58 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~~~~~~~~d~~~~~~------~-------~~v~~~~~~~   58 (84)
                      ++.+..+... ..+  .++++|+++++..++          .++.+.+||..+...      .       .....++++|
T Consensus        41 ~~~~~~i~~g-~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp  117 (361)
T 2oiz_A           41 GKFLGMVPTA-FNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT  117 (361)
T ss_dssp             CCEEEEEECC-EEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT
T ss_pred             CeEEEEecCC-CCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC
Confidence            4556666554 444  889999999988875          256799999876544      1       2456799999


Q ss_pred             CCCEEEEecC--CCcEEEEeCCCCeec
Q psy16880         59 KQRTLISGGD--DGSICMWNLNSKLCD   83 (84)
Q Consensus        59 ~~~~~~~~~~--~~~i~~~~~~~~~~~   83 (84)
                      +++.++++..  ++.|.+||+.+++.+
T Consensus       118 dg~~l~v~n~~~~~~v~v~d~~~~~~~  144 (361)
T 2oiz_A          118 DGKFIVLQNASPATSIGIVDVAKGDYV  144 (361)
T ss_dssp             TSSEEEEEEESSSEEEEEEETTTTEEE
T ss_pred             CCCEEEEECCCCCCeEEEEECCCCcEE
Confidence            9998887763  578999999887653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.63  E-value=1.2e-06  Score=47.95  Aligned_cols=68  Identities=10%  Similarity=0.210  Sum_probs=50.2

Q ss_pred             cCEEEEEEccCCCEEEEeCC--CCcEEEEeCCC--CCC--------CCCEEEEEEccCCCEEEEec-CCCcEEEE--eCC
Q psy16880         14 SAVRSISFCSKQHTLISGGD--DGSICMWNLNS--KLC--------DSAVRSISFCSKQRTLISGG-DDGSICMW--NLN   78 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~~~~~--~~~~~~~d~~~--~~~--------~~~v~~~~~~~~~~~~~~~~-~~~~i~~~--~~~   78 (84)
                      .....++|+|+++.++.+..  ++.+.+|++..  +..        ...+..++|+|+++++++++ .++.+.+|  |..
T Consensus       259 ~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~  338 (361)
T 3scy_A          259 QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQA  338 (361)
T ss_dssp             CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTT
T ss_pred             CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECC
Confidence            34568999999998866554  48899999862  221        33678999999999887776 56889996  444


Q ss_pred             CCe
Q psy16880         79 SKL   81 (84)
Q Consensus        79 ~~~   81 (84)
                      +++
T Consensus       339 ~g~  341 (361)
T 3scy_A          339 TGL  341 (361)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            554

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.61  E-value=3.8e-07  Score=53.92  Aligned_cols=66  Identities=8%  Similarity=0.153  Sum_probs=49.7

Q ss_pred             EEEEEccCCCEEEEeCCCC----------------------------------cEEEEeCCCCCC-------------CC
Q psy16880         17 RSISFCSKQHTLISGGDDG----------------------------------SICMWNLNSKLC-------------DS   49 (84)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~----------------------------------~~~~~d~~~~~~-------------~~   49 (84)
                      ..++|+|+++.|+.++.+.                                  .+.+||+.+...             ..
T Consensus       176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~  255 (723)
T 1xfd_A          176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY  255 (723)
T ss_dssp             EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred             ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence            6899999999988876432                                  788999876652             12


Q ss_pred             CEEEEEEccCCCEEEEecC----CCcEEEEeCCCCee
Q psy16880         50 AVRSISFCSKQRTLISGGD----DGSICMWNLNSKLC   82 (84)
Q Consensus        50 ~v~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~   82 (84)
                      .+..++|+|+++.++....    +..|.+||+.++++
T Consensus       256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~  292 (723)
T 1xfd_A          256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC  292 (723)
T ss_dssp             EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE
T ss_pred             eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc
Confidence            5788999999987765532    35689999887664

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.56  E-value=5.7e-07  Score=49.81  Aligned_cols=63  Identities=6%  Similarity=0.114  Sum_probs=49.9

Q ss_pred             EEEccCCCEEEEeCC-----------CCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCC-
Q psy16880         19 ISFCSKQHTLISGGD-----------DGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSK-   80 (84)
Q Consensus        19 ~~~~~~~~~l~~~~~-----------~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-   80 (84)
                      ++++|++..+..+..           ...+.+||..+.+.      .. +.+++|+|+++.++++.. +.|.+||..++ 
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~  336 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPE  336 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSS
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCc
Confidence            678888777665432           34799999987765      44 899999999998888876 99999999988 


Q ss_pred             -eec
Q psy16880         81 -LCD   83 (84)
Q Consensus        81 -~~~   83 (84)
                       +.+
T Consensus       337 l~~~  340 (361)
T 2oiz_A          337 PKLL  340 (361)
T ss_dssp             CEEE
T ss_pred             ceee
Confidence             654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.56  E-value=4.4e-06  Score=46.07  Aligned_cols=66  Identities=14%  Similarity=0.189  Sum_probs=50.5

Q ss_pred             CcCEEEEEEccCCCEEEEeC-CCCcEEEEeCC-CCCC-----------CCCEEEEEEccCCCEEEEecC-CCcEEEEeCC
Q psy16880         13 NSAVRSISFCSKQHTLISGG-DDGSICMWNLN-SKLC-----------DSAVRSISFCSKQRTLISGGD-DGSICMWNLN   78 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~-~~~~~~~~d~~-~~~~-----------~~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~~   78 (84)
                      ...+..++|+|+++.++++. .+..+.+||+. ++..           ...+.+++|+|+++.++++.. ++.+.+|++.
T Consensus       144 ~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~  223 (365)
T 1jof_A          144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence            45688999999999777654 46789999997 4432           235889999999998877664 6789998754

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.55  E-value=4.1e-07  Score=53.86  Aligned_cols=65  Identities=12%  Similarity=0.207  Sum_probs=52.2

Q ss_pred             EEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----C------CCEEEEEEccCCCEEEEecC---------CCcEEEEeC
Q psy16880         17 RSISFCSKQHTLISGGDDGSICMWNLNSKLC----D------SAVRSISFCSKQRTLISGGD---------DGSICMWNL   77 (84)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----~------~~v~~~~~~~~~~~~~~~~~---------~~~i~~~~~   77 (84)
                      ..++|+|+++.+++ +.++.+.+||+.++..    .      ..+..++|+|+++.++.++.         ++.|.+||+
T Consensus        19 ~~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           19 FFPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            36789999965554 4689999999987655    1      23889999999999988765         689999999


Q ss_pred             CCCee
Q psy16880         78 NSKLC   82 (84)
Q Consensus        78 ~~~~~   82 (84)
                      .+++.
T Consensus        98 ~~g~~  102 (719)
T 1z68_A           98 SNGEF  102 (719)
T ss_dssp             TTTEE
T ss_pred             CCCcc
Confidence            88875

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.53  E-value=8.1e-06  Score=48.33  Aligned_cols=79  Identities=11%  Similarity=0.158  Sum_probs=54.7

Q ss_pred             CceEEEeccCCCcCEEE-EEEccCCCEEEE-eCCCC----cEEEEeCCCCCC-----CCCEEEEEEccCCCEEEEecCC-
Q psy16880          2 GSIIHTFVHSNNSAVRS-ISFCSKQHTLIS-GGDDG----SICMWNLNSKLC-----DSAVRSISFCSKQRTLISGGDD-   69 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~-~~~~~~~~~l~~-~~~~~----~~~~~d~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~-   69 (84)
                      ++.++.+..+ ...+.. ++|+|+++.++. +..++    .+..||..+...     ...+..++|+|+++.++....+ 
T Consensus       344 ~~~~~~l~~~-~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~  422 (706)
T 2z3z_A          344 GRLIRQVTKG-EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSP  422 (706)
T ss_dssp             SCEEEECCCS-SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECS
T ss_pred             CCEEEecCCC-CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEecCC
Confidence            4455666666 666766 799999987654 44443    555666655433     4568899999999988765433 


Q ss_pred             ---CcEEEEeCCCCe
Q psy16880         70 ---GSICMWNLNSKL   81 (84)
Q Consensus        70 ---~~i~~~~~~~~~   81 (84)
                         ..+.+||..+++
T Consensus       423 ~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          423 TVPRKVTVTNIGKGS  437 (706)
T ss_dssp             SCSCEEEEEESSSCE
T ss_pred             CCCcEEEEEECCCCe
Confidence               459999987764

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.53  E-value=3.5e-06  Score=45.07  Aligned_cols=75  Identities=4%  Similarity=0.018  Sum_probs=58.5

Q ss_pred             EEeccCCCcCEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC-----CCCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880          6 HTFVHSNNSAVRSISFCSKQH-TLISGGDDGSICMWNLNSKLC-----DSAVRSISFCSKQRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus         6 ~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~   79 (84)
                      ..+... ......++|+|+++ +++++..++.+..||......     ...+.++++.+++.++++...++.|.+|+..+
T Consensus        21 ~~l~~~-~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~   99 (296)
T 3e5z_A           21 RRLADG-FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG   99 (296)
T ss_dssp             EEEECC-CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred             EEEecC-CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence            344444 55678999999998 778888889999999876521     45689999999999877776678899999866


Q ss_pred             Ce
Q psy16880         80 KL   81 (84)
Q Consensus        80 ~~   81 (84)
                      ++
T Consensus       100 g~  101 (296)
T 3e5z_A          100 GE  101 (296)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.53  E-value=1e-06  Score=49.67  Aligned_cols=65  Identities=17%  Similarity=0.117  Sum_probs=51.7

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (84)
                      ...+.++.+.+.  .++.+..+|.+.+||+.....   ...|++++|+|+|  ++.+..|+.+.+|++...+
T Consensus       126 ~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~  193 (388)
T 1xip_A          126 EKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGE  193 (388)
T ss_dssp             SSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSE--EEEEETTSCEEEEEEETTE
T ss_pred             ecceeeEEecCC--CEEEEECCCCEEEEEccCCccccccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCcc
Confidence            456777766543  388889999999999986544   5689999999999  6778889999999876654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.47  E-value=9.9e-07  Score=52.41  Aligned_cols=68  Identities=6%  Similarity=0.061  Sum_probs=52.6

Q ss_pred             cCEEEEEEccCCCEEE-----EeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCc----------
Q psy16880         14 SAVRSISFCSKQHTLI-----SGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGS----------   71 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~-----~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~----------   71 (84)
                      ..+..++|+|+|+.++     .|+.+..+.+||+.++..       ......++|+|+++.++.++.+..          
T Consensus       121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~  200 (695)
T 2bkl_A          121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPG  200 (695)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGG
T ss_pred             EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCC
Confidence            3578899999999988     555567899999976543       111267899999999988877665          


Q ss_pred             ---EEEEeCCCCe
Q psy16880         72 ---ICMWNLNSKL   81 (84)
Q Consensus        72 ---i~~~~~~~~~   81 (84)
                         |.+|++.+++
T Consensus       201 ~~~v~~~~l~t~~  213 (695)
T 2bkl_A          201 YTTIRYHTLGTEP  213 (695)
T ss_dssp             GCEEEEEETTSCG
T ss_pred             CCEEEEEECCCCc
Confidence               9999987654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.43  E-value=2.1e-05  Score=41.76  Aligned_cols=79  Identities=13%  Similarity=0.195  Sum_probs=58.4

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      |+.+..+...+...+..+++++++..+++...++.+.+||......        ...+.++++.++++++++...++.|.
T Consensus       109 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~  188 (286)
T 1q7f_A          109 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVK  188 (286)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEE
T ss_pred             CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEE
Confidence            4445555332145678999999999888888888999999653322        23588999999998777777788999


Q ss_pred             EEeCCCC
Q psy16880         74 MWNLNSK   80 (84)
Q Consensus        74 ~~~~~~~   80 (84)
                      +|+....
T Consensus       189 ~~~~~g~  195 (286)
T 1q7f_A          189 VFNYEGQ  195 (286)
T ss_dssp             EEETTCC
T ss_pred             EEcCCCC
Confidence            9997543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.42  E-value=8.2e-07  Score=48.84  Aligned_cols=79  Identities=10%  Similarity=0.144  Sum_probs=54.6

Q ss_pred             CceEEEeccCCCcC-----EEEEEEccCCCEEEEeCC---CCcEEEEeCCCCCC------CCC-EEEEEEccCCCEEEEe
Q psy16880          2 GSIIHTFVHSNNSA-----VRSISFCSKQHTLISGGD---DGSICMWNLNSKLC------DSA-VRSISFCSKQRTLISG   66 (84)
Q Consensus         2 g~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~---~~~~~~~d~~~~~~------~~~-v~~~~~~~~~~~~~~~   66 (84)
                      |+.+..+..+ ...     +..++|+|+++.++....   ...+.+||+.....      ... .....|+|+++.++.+
T Consensus        20 g~~~~~l~~~-~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~   98 (396)
T 3c5m_A           20 QVKVTRLTPT-DIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYV   98 (396)
T ss_dssp             CCEEEECSCT-TSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEE
T ss_pred             CcceEEEecC-CCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEE
Confidence            4555566543 332     567789999998766533   23677788766543      222 2237799999999888


Q ss_pred             cCCCcEEEEeCCCCe
Q psy16880         67 GDDGSICMWNLNSKL   81 (84)
Q Consensus        67 ~~~~~i~~~~~~~~~   81 (84)
                      +.++.+.+|++.+++
T Consensus        99 ~~~~~l~~~d~~~~~  113 (396)
T 3c5m_A           99 KNELNLMKVDLETLE  113 (396)
T ss_dssp             ETTTEEEEEETTTCC
T ss_pred             EcCCcEEEEECCCCC
Confidence            888899999988765

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.41  E-value=1.2e-06  Score=52.19  Aligned_cols=67  Identities=9%  Similarity=0.143  Sum_probs=51.4

Q ss_pred             CEEEEEEccCCCEEEEeCCCC-----cEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCc------------
Q psy16880         15 AVRSISFCSKQHTLISGGDDG-----SICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGS------------   71 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~~~~~~~-----~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~------------   71 (84)
                      .+..++|+|+++.++.+...+     .+.+||+.++..      ...+..++|+|+++.++.+..++.            
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~  205 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccC
Confidence            477899999999887654332     899999987655      223567999999998988876655            


Q ss_pred             ----EEEEeCCCCe
Q psy16880         72 ----ICMWNLNSKL   81 (84)
Q Consensus        72 ----i~~~~~~~~~   81 (84)
                          |.+|++.+++
T Consensus       206 ~~~~v~~~~l~t~~  219 (710)
T 2xdw_A          206 LHQKLYYHVLGTDQ  219 (710)
T ss_dssp             CCCEEEEEETTSCG
T ss_pred             CCCEEEEEECCCCc
Confidence                9999987654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.38  E-value=2.3e-06  Score=51.19  Aligned_cols=67  Identities=13%  Similarity=0.186  Sum_probs=51.7

Q ss_pred             CEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------CC--CEEEEEEccCCCEEEEecCC---------CcEE
Q psy16880         15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DS--AVRSISFCSKQRTLISGGDD---------GSIC   73 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------~~--~v~~~~~~~~~~~~~~~~~~---------~~i~   73 (84)
                      ....+.|+|+++.++++  ++.+.+||+.++..          ..  ....++|+|+++.++.++.+         +.+.
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            35688999999888886  89999999987654          11  12348899999999887764         5567


Q ss_pred             EEeCCCCeec
Q psy16880         74 MWNLNSKLCD   83 (84)
Q Consensus        74 ~~~~~~~~~~   83 (84)
                      +||+.+++..
T Consensus        96 ~~d~~~~~~~  105 (740)
T 4a5s_A           96 IYDLNKRQLI  105 (740)
T ss_dssp             EEETTTTEEC
T ss_pred             EEECCCCcEE
Confidence            9999988753

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.35  E-value=2.1e-06  Score=50.46  Aligned_cols=68  Identities=6%  Similarity=-0.030  Sum_probs=52.6

Q ss_pred             CcCEEEEEEccCCCEEEEeCCC----------CcEEEEeCCC------CCC---C----CCEEEEEEccCCCEEEEecCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDD----------GSICMWNLNS------KLC---D----SAVRSISFCSKQRTLISGGDD   69 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~----------~~~~~~d~~~------~~~---~----~~v~~~~~~~~~~~~~~~~~~   69 (84)
                      ...+..++|+|+++.|+.++.+          ..+.+||+..      ...   .    ..+..++|+|+++.++..+.+
T Consensus       129 ~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~  208 (662)
T 3azo_A          129 GLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWD  208 (662)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEEC
T ss_pred             CccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECC
Confidence            5678899999999999888766          5788999876      332   2    346778999999999877644


Q ss_pred             --------CcEEEEeCC-CC
Q psy16880         70 --------GSICMWNLN-SK   80 (84)
Q Consensus        70 --------~~i~~~~~~-~~   80 (84)
                              ..|.+||+. ++
T Consensus       209 ~~~~~~~~~~i~~~d~~~~g  228 (662)
T 3azo_A          209 HPRMPWEGTELKTARVTEDG  228 (662)
T ss_dssp             TTCCTTTCEEEEEEEECTTS
T ss_pred             CCCCCCCCcEEEEEEECCCC
Confidence                    369999988 45

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.32  E-value=3.1e-05  Score=42.25  Aligned_cols=68  Identities=15%  Similarity=0.087  Sum_probs=55.5

Q ss_pred             CcCEEEEEEccCCCEEEEeCCC------------------------CcEEEEeCCCCCC--------CCCEEEEEEccCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDD------------------------GSICMWNLNSKLC--------DSAVRSISFCSKQ   60 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~------------------------~~~~~~d~~~~~~--------~~~v~~~~~~~~~   60 (84)
                      .+.+..++++++++.+++...+                        +.+.+||..++..        -..+..+++.|++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4678999999999999888777                        4689999875544        2368899999999


Q ss_pred             CEEEEecCCCcEEEEeCCCC
Q psy16880         61 RTLISGGDDGSICMWNLNSK   80 (84)
Q Consensus        61 ~~~~~~~~~~~i~~~~~~~~   80 (84)
                      .++++...++.|.+|+....
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~  122 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSK  122 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCS
T ss_pred             CEEEEECCCCEEEEEeCCCC
Confidence            98888888899999997644

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.31  E-value=4.1e-06  Score=49.23  Aligned_cols=69  Identities=6%  Similarity=0.040  Sum_probs=50.6

Q ss_pred             CcCEEEEEEccCCCEEEEeCCC--------CcEEEEeCC-CC---CC-------CCCEEEEEEccCCCEEEEecCCC--c
Q psy16880         13 NSAVRSISFCSKQHTLISGGDD--------GSICMWNLN-SK---LC-------DSAVRSISFCSKQRTLISGGDDG--S   71 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~--------~~~~~~d~~-~~---~~-------~~~v~~~~~~~~~~~~~~~~~~~--~   71 (84)
                      ...+..++|+|+|+.++..+.+        ..+.+||+. ++   ..       ...+..+.|+|++++++++..++  .
T Consensus       187 ~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~  266 (662)
T 3azo_A          187 HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWN  266 (662)
T ss_dssp             SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCE
T ss_pred             CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeE
Confidence            4567788999999988866543        378899998 44   22       35788999999999777777777  5


Q ss_pred             EEEEeCCCCe
Q psy16880         72 ICMWNLNSKL   81 (84)
Q Consensus        72 i~~~~~~~~~   81 (84)
                      |.+|+..+++
T Consensus       267 l~~~~~~~~~  276 (662)
T 3azo_A          267 LHRVDPATGA  276 (662)
T ss_dssp             EEEECTTTCC
T ss_pred             EEEEECCCCc
Confidence            6666654443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.30  E-value=6.1e-06  Score=44.84  Aligned_cols=67  Identities=12%  Similarity=0.168  Sum_probs=48.7

Q ss_pred             CEEEEEEccCCCEEEEeCCC---C--cEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCC--------------
Q psy16880         15 AVRSISFCSKQHTLISGGDD---G--SICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDD--------------   69 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~~~~~~---~--~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~--------------   69 (84)
                      .+..++|+|+++.++..+.+   +  .+.+||+..+..      .. +..+.|+|+++.++..+.+              
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~  138 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP  138 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence            35678999999988776543   3  366677765543      34 8899999999988877532              


Q ss_pred             -------------CcEEEEeCCCCee
Q psy16880         70 -------------GSICMWNLNSKLC   82 (84)
Q Consensus        70 -------------~~i~~~~~~~~~~   82 (84)
                                   ..|.+|++.+++.
T Consensus       139 ~~~~g~~~~~~~~~~l~~~d~~~~~~  164 (347)
T 2gop_A          139 AWFDDLGFFDGEKTTFWIFDTESEEV  164 (347)
T ss_dssp             CC---------CEEEEEEEETTTTEE
T ss_pred             eeecCcccccCccceEEEEECCCCeE
Confidence                         4688899887764

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.28  E-value=5.1e-06  Score=46.85  Aligned_cols=79  Identities=10%  Similarity=0.034  Sum_probs=58.5

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeC----------CCCcEEEEeCCCCCC------C--------CCEEEEEEc
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGG----------DDGSICMWNLNSKLC------D--------SAVRSISFC   57 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~~~~~~~~d~~~~~~------~--------~~v~~~~~~   57 (84)
                      ++.+.++..- ..+ . +.++|+++.+..++          .+..+.+||..+...      .        .....+.++
T Consensus        69 ~~v~~~I~vG-~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~s  145 (386)
T 3sjl_D           69 GRVIGMIDGG-FLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLT  145 (386)
T ss_dssp             TEEEEEEEEC-SSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEEC
T ss_pred             CeEEEEEECC-CCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEc
Confidence            4556666654 455 4 89999999877665          356799999987665      1        135568999


Q ss_pred             cCCCEEEEecC--CCcEEEEeCCCCeec
Q psy16880         58 SKQRTLISGGD--DGSICMWNLNSKLCD   83 (84)
Q Consensus        58 ~~~~~~~~~~~--~~~i~~~~~~~~~~~   83 (84)
                      |+++.++....  ++.+.++|+.+++.+
T Consensus       146 pDGk~lyVan~~~~~~VsVID~~t~~vv  173 (386)
T 3sjl_D          146 PDGKTLLFYQFSPAPAVGVVDLEGKAFK  173 (386)
T ss_dssp             TTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred             CCCCEEEEEEcCCCCeEEEEECCCCcEE
Confidence            99998887753  688999999988764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.26  E-value=4.1e-05  Score=42.80  Aligned_cols=78  Identities=8%  Similarity=-0.065  Sum_probs=56.1

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeC----------CCCcEEEEeCCCCCC------C--------CCEEEEEEc
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGG----------DDGSICMWNLNSKLC------D--------SAVRSISFC   57 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~~~~~~~~d~~~~~~------~--------~~v~~~~~~   57 (84)
                      ++.+.+++.. ..+  .+.++|+++.+..++          .+..+.+||..+...      .        .....+.++
T Consensus        57 ~~~~~~i~~g-~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~s  133 (373)
T 2mad_H           57 GSILGHVNGG-FLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANT  133 (373)
T ss_pred             CeEEEEecCC-CCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEEC
Confidence            4555555543 333  889999999888775          356799999976543      1        134578999


Q ss_pred             cCCCEEEEecC--CCcEEEEeCCCCeec
Q psy16880         58 SKQRTLISGGD--DGSICMWNLNSKLCD   83 (84)
Q Consensus        58 ~~~~~~~~~~~--~~~i~~~~~~~~~~~   83 (84)
                      |+++.++....  ++.|.++| .+++.+
T Consensus       134 pDG~~l~v~n~~~~~~v~viD-~t~~~~  160 (373)
T 2mad_H          134 PNNADLLFFQFAAGPAVGLVV-QGGSSD  160 (373)
T ss_pred             CCCCEEEEEecCCCCeEEEEE-CCCCEE
Confidence            99999988764  47899999 887653

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.25  E-value=6.7e-05  Score=39.39  Aligned_cols=70  Identities=6%  Similarity=0.024  Sum_probs=57.1

Q ss_pred             cCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      ..+..+++++++..+++...++.+..||......       -..+.++++.++++++++...++.|.+++....+..
T Consensus       192 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~~  268 (270)
T 1rwi_B          192 TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHHH  268 (270)
T ss_dssp             CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGSC
T ss_pred             CCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcccc
Confidence            5578899999998888888888999999865543       246899999999998888888999999998776543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.22  E-value=3e-05  Score=41.62  Aligned_cols=66  Identities=20%  Similarity=0.130  Sum_probs=53.2

Q ss_pred             EEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880         16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        16 v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                      ...++..+++..+++...++.+..||.. ++.      ...+..+...+++..++++..++.+..+|..+++.
T Consensus       127 ~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~  198 (276)
T 3no2_A          127 FRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI  198 (276)
T ss_dssp             CSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred             ccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence            3345678899999999999999999987 544      44667788889999888888888899999887765

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.19  E-value=1e-05  Score=44.66  Aligned_cols=66  Identities=11%  Similarity=0.077  Sum_probs=48.4

Q ss_pred             EEEEEEccCCCE--EEEeC-------------CCCcEEEEeCCC-CCC-----------CCCEEEEEEccCCCEEEEecC
Q psy16880         16 VRSISFCSKQHT--LISGG-------------DDGSICMWNLNS-KLC-----------DSAVRSISFCSKQRTLISGGD   68 (84)
Q Consensus        16 v~~~~~~~~~~~--l~~~~-------------~~~~~~~~d~~~-~~~-----------~~~v~~~~~~~~~~~~~~~~~   68 (84)
                      ...++++|+++.  +++++             .++.+.+|++.. +..           ...+..++|+|+++.++++..
T Consensus        85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~  164 (365)
T 1jof_A           85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL  164 (365)
T ss_dssp             GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred             CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC
Confidence            345788999984  44554             688999999863 222           246889999999998776653


Q ss_pred             -CCcEEEEeCC-CCe
Q psy16880         69 -DGSICMWNLN-SKL   81 (84)
Q Consensus        69 -~~~i~~~~~~-~~~   81 (84)
                       ++.|.+|++. +++
T Consensus       165 ~~~~v~~~~~~~~g~  179 (365)
T 1jof_A          165 TANKLWTHRKLASGE  179 (365)
T ss_dssp             TTTEEEEEEECTTSC
T ss_pred             CCCEEEEEEECCCCC
Confidence             6789999987 554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.09  E-value=0.00021  Score=39.04  Aligned_cols=65  Identities=8%  Similarity=0.100  Sum_probs=49.1

Q ss_pred             CEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEcc-CCCEEEEe----cCCCcEEEEeCCCC
Q psy16880         15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCS-KQRTLISG----GDDGSICMWNLNSK   80 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~-~~~~~~~~----~~~~~i~~~~~~~~   80 (84)
                      ....++++|+++.+..+..  .+.+||..+...         .....+++++| ++...++.    ..++.|.+||.. +
T Consensus       226 ~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g  302 (328)
T 3dsm_A          226 WPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G  302 (328)
T ss_dssp             CCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C
T ss_pred             CceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C
Confidence            4678999999888877665  788999876543         14688999998 56655665    567889999987 5


Q ss_pred             ee
Q psy16880         81 LC   82 (84)
Q Consensus        81 ~~   82 (84)
                      +.
T Consensus       303 ~~  304 (328)
T 3dsm_A          303 KL  304 (328)
T ss_dssp             CE
T ss_pred             CE
Confidence            43

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.07  E-value=9.7e-05  Score=41.33  Aligned_cols=66  Identities=8%  Similarity=0.027  Sum_probs=50.3

Q ss_pred             EEEEccCCCEEEEeCC----------CCcEEEEeCCCCCC------CCCEEEEEEccCCC-EEEEec-CCCcEEEEeCCC
Q psy16880         18 SISFCSKQHTLISGGD----------DGSICMWNLNSKLC------DSAVRSISFCSKQR-TLISGG-DDGSICMWNLNS   79 (84)
Q Consensus        18 ~~~~~~~~~~l~~~~~----------~~~~~~~d~~~~~~------~~~v~~~~~~~~~~-~~~~~~-~~~~i~~~~~~~   79 (84)
                      .+.++|++..+..+..          .+.+.++|..+...      .....++.|+|+++ .+++.. .++.+.++|..+
T Consensus       271 ~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t  350 (373)
T 2mad_H          271 QVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             eEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence            3677888777666532          34788889877655      55689999999998 666666 489999999998


Q ss_pred             Ceec
Q psy16880         80 KLCD   83 (84)
Q Consensus        80 ~~~~   83 (84)
                      ++.+
T Consensus       351 ~~vv  354 (373)
T 2mad_H          351 GDQD  354 (373)
T ss_pred             CCEE
Confidence            8765

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.06  E-value=5.1e-05  Score=41.76  Aligned_cols=70  Identities=10%  Similarity=-0.074  Sum_probs=48.5

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEE--EccCCCEEEEe-----------------
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSIS--FCSKQRTLISG-----------------   66 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~--~~~~~~~~~~~-----------------   66 (84)
                      ...+....|+|+++.|+.+..+..+.+||+.+...       ...+....  ++|++..++..                 
T Consensus        80 ~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~  159 (388)
T 3pe7_A           80 GDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFH  159 (388)
T ss_dssp             CBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHH
T ss_pred             CCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhh
Confidence            44444668999999999999888999999987654       22232233  47888877632                 


Q ss_pred             -----cCCCcEEEEeCCCCee
Q psy16880         67 -----GDDGSICMWNLNSKLC   82 (84)
Q Consensus        67 -----~~~~~i~~~~~~~~~~   82 (84)
                           ..+..|.+||+.+++.
T Consensus       160 ~~~~~~~~~~l~~~d~~~g~~  180 (388)
T 3pe7_A          160 EFYFTKPCCRLMRVDLKTGES  180 (388)
T ss_dssp             HHGGGCCCEEEEEEETTTCCE
T ss_pred             hhhccCCcceEEEEECCCCce
Confidence                 2345788899887653

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.04  E-value=0.00014  Score=39.00  Aligned_cols=73  Identities=11%  Similarity=0.069  Sum_probs=54.2

Q ss_pred             CCceEEEeccCCC-cCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecC-CC
Q psy16880          1 DGSIIHTFVHSNN-SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGD-DG   70 (84)
Q Consensus         1 ~g~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~-~~   70 (84)
                      +|+.++++..+ . ..+..+.+.|+++.+++  .+..+..||. ++..        ...+..+.+.+++..+++.+. ++
T Consensus        24 tG~~~w~~~~~-~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~   99 (276)
T 3no2_A           24 TKEIVWEYPLE-KGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPS   99 (276)
T ss_dssp             TTEEEEEEECC-TTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTE
T ss_pred             CCeEEEEeCCC-ccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCC
Confidence            57888888775 4 46788899999998884  3566888887 4433        246788889999998888776 66


Q ss_pred             cEEEEeC
Q psy16880         71 SICMWNL   77 (84)
Q Consensus        71 ~i~~~~~   77 (84)
                      .+..++.
T Consensus       100 ~v~~vd~  106 (276)
T 3no2_A          100 TILEVNM  106 (276)
T ss_dssp             EEEEECT
T ss_pred             EEEEEeC
Confidence            6776665

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.03  E-value=0.0001  Score=41.70  Aligned_cols=63  Identities=13%  Similarity=0.168  Sum_probs=49.9

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (84)
                      .+ |..++|  ++..|+.+ .++.+.+||+.....       +..+..+.+.+.  .++++..+|.+.+|++.++.
T Consensus        88 p~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~  157 (388)
T 1xip_A           88 PD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS  157 (388)
T ss_dssp             TT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC
T ss_pred             CC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCc
Confidence            55 999999  88888888 789999999876544       455777666543  38888899999999998654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.02  E-value=0.00029  Score=38.41  Aligned_cols=77  Identities=9%  Similarity=0.044  Sum_probs=56.8

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCC--C---------------CCCEEEEEEcc-CCCEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKL--C---------------DSAVRSISFCS-KQRTL   63 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~--~---------------~~~v~~~~~~~-~~~~~   63 (84)
                      |+.+..+...+......+++++++.++++...++.+..||.....  .               -..+..+++.| ++.++
T Consensus        79 g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~ly  158 (329)
T 3fvz_A           79 AEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVF  158 (329)
T ss_dssp             CCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEE
T ss_pred             CeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEE
Confidence            444444432213467889999999999998889999999986542  1               12588999999 78877


Q ss_pred             EEec-CCCcEEEEeCC
Q psy16880         64 ISGG-DDGSICMWNLN   78 (84)
Q Consensus        64 ~~~~-~~~~i~~~~~~   78 (84)
                      ++.+ .++.|.+|+..
T Consensus       159 v~d~~~~~~I~~~~~~  174 (329)
T 3fvz_A          159 VSDGYCNSRIVQFSPS  174 (329)
T ss_dssp             EEECSSCCEEEEECTT
T ss_pred             EEeCCCCCeEEEEcCC
Confidence            7776 58899999854

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.02  E-value=7.3e-05  Score=44.67  Aligned_cols=64  Identities=5%  Similarity=0.066  Sum_probs=48.6

Q ss_pred             EEEEEEccCCCEEEEeCCCCc----------------EEEEeCCCCCC-----------CCCEEEEEEccCCCEEEEecC
Q psy16880         16 VRSISFCSKQHTLISGGDDGS----------------ICMWNLNSKLC-----------DSAVRSISFCSKQRTLISGGD   68 (84)
Q Consensus        16 v~~~~~~~~~~~l~~~~~~~~----------------~~~~d~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~   68 (84)
                      +..++|+|+++.|+.+..+..                +.+|++.+...           ...+..+.|+|+++.++..+.
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~  252 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR  252 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence            457899999998887766554                88999876542           123678999999998876654


Q ss_pred             -----CCcEEEEeCCC
Q psy16880         69 -----DGSICMWNLNS   79 (84)
Q Consensus        69 -----~~~i~~~~~~~   79 (84)
                           +..+.+||+.+
T Consensus       253 ~~~~~~~~l~~~d~~~  268 (710)
T 2xdw_A          253 EGCDPVNRLWYCDLQQ  268 (710)
T ss_dssp             CSSSSCCEEEEEEGGG
T ss_pred             ccCCCccEEEEEECcc
Confidence                 56799999865

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.01  E-value=0.00013  Score=39.92  Aligned_cols=77  Identities=6%  Similarity=0.004  Sum_probs=54.5

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCC----------CcEEEEeCCCCCC--------CCCEEEEEEccCCCEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDD----------GSICMWNLNSKLC--------DSAVRSISFCSKQRTL   63 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~----------~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~   63 (84)
                      ++.+..++.. . ....+.++++++++++...+          +.+.++|..+...        ......++++|++..+
T Consensus       162 ~~~~~~i~~g-~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~l  239 (328)
T 3dsm_A          162 DKVVDELTIG-I-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTL  239 (328)
T ss_dssp             TEEEEEEECS-S-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEE
T ss_pred             CeEEEEEEcC-C-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEE
Confidence            3444444432 2 23577889999887777654          7899999876544        2358899999988888


Q ss_pred             EEecCCCcEEEEeCCCCee
Q psy16880         64 ISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        64 ~~~~~~~~i~~~~~~~~~~   82 (84)
                      .....  .+.+||..+++.
T Consensus       240 yv~~~--~v~~~d~~t~~~  256 (328)
T 3dsm_A          240 YWINN--DIWRMPVEADRV  256 (328)
T ss_dssp             EEESS--SEEEEETTCSSC
T ss_pred             EEEcc--EEEEEECCCCce
Confidence            77654  899999877653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.96  E-value=3.4e-05  Score=44.10  Aligned_cols=79  Identities=9%  Similarity=0.003  Sum_probs=58.3

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeC----------CCCcEEEEeCCCCCC------C--------CCEEEEEEc
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGG----------DDGSICMWNLNSKLC------D--------SAVRSISFC   57 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~~~~~~~~d~~~~~~------~--------~~v~~~~~~   57 (84)
                      ++.+.+++.- ..+  .+.++|+++.+..++          .++.+.++|..+...      .        .....+.++
T Consensus       109 ~~vv~~I~vG-~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~s  185 (426)
T 3c75_H          109 GRILGMTDGG-FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALT  185 (426)
T ss_dssp             TEEEEEEEEC-SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEEC
T ss_pred             CEEEEEEECC-CCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEc
Confidence            4556666654 445  789999998877765          356899999987655      1        124568899


Q ss_pred             cCCCEEEEecC--CCcEEEEeCCCCeec
Q psy16880         58 SKQRTLISGGD--DGSICMWNLNSKLCD   83 (84)
Q Consensus        58 ~~~~~~~~~~~--~~~i~~~~~~~~~~~   83 (84)
                      |+++.++....  ++.+.+.|+.+++.+
T Consensus       186 pDGk~lyV~n~~~~~~VsVID~~t~kvv  213 (426)
T 3c75_H          186 PDNKNLLFYQFSPAPAVGVVDLEGKTFD  213 (426)
T ss_dssp             TTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred             CCCCEEEEEecCCCCeEEEEECCCCeEE
Confidence            99998887754  578999999988754

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.93  E-value=0.00011  Score=43.35  Aligned_cols=60  Identities=20%  Similarity=0.174  Sum_probs=49.2

Q ss_pred             cCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCC--CCee
Q psy16880         23 SKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLN--SKLC   82 (84)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~   82 (84)
                      +.+..+++...++.+.++|..+...      ...+..+.++|+++.+++++.++.+.+||+.  +.+.
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~  232 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT  232 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE
Confidence            4456777888899999999987655      4567899999999999999999999999995  5443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.92  E-value=9.1e-05  Score=40.74  Aligned_cols=69  Identities=6%  Similarity=-0.074  Sum_probs=47.4

Q ss_pred             CcCEEEEEEcc-CCCEEEEeCCC------CcEEEEeCCCCCC----C----CCEEEEEEccCCCEEEEecCC-----CcE
Q psy16880         13 NSAVRSISFCS-KQHTLISGGDD------GSICMWNLNSKLC----D----SAVRSISFCSKQRTLISGGDD-----GSI   72 (84)
Q Consensus        13 ~~~v~~~~~~~-~~~~l~~~~~~------~~~~~~d~~~~~~----~----~~v~~~~~~~~~~~~~~~~~~-----~~i   72 (84)
                      ...+..+.|+| ++..++....+      ..+.+||......    .    ..+..+.|+|+++.++..+.+     +.|
T Consensus       187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l  266 (396)
T 3c5m_A          187 TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVI  266 (396)
T ss_dssp             SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEE
T ss_pred             CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceE
Confidence            56678899999 77766544332      3577888765433    2    147778999999877666433     349


Q ss_pred             EEEeCCCCe
Q psy16880         73 CMWNLNSKL   81 (84)
Q Consensus        73 ~~~~~~~~~   81 (84)
                      .+||+.+++
T Consensus       267 ~~~d~~~g~  275 (396)
T 3c5m_A          267 YKANPETLE  275 (396)
T ss_dssp             EEECTTTCC
T ss_pred             EEEECCCCC
Confidence            999987765

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.90  E-value=0.00052  Score=37.13  Aligned_cols=67  Identities=13%  Similarity=0.074  Sum_probs=48.6

Q ss_pred             CcCEEEEEEccCCCEEEEeCCC----CcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecC------CCcEE
Q psy16880         13 NSAVRSISFCSKQHTLISGGDD----GSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGD------DGSIC   73 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~----~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~------~~~i~   73 (84)
                      ...+..+++++++.++++...+    +.+.+||......         ...+..+.+.|++..+++...      .+.+.
T Consensus        86 ~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~  165 (333)
T 2dg1_A           86 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVY  165 (333)
T ss_dssp             SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEE
T ss_pred             CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEE
Confidence            5678999999999988877666    6788898765433         246889999999987776543      24465


Q ss_pred             EEeCCC
Q psy16880         74 MWNLNS   79 (84)
Q Consensus        74 ~~~~~~   79 (84)
                      .++..+
T Consensus       166 ~~~~~~  171 (333)
T 2dg1_A          166 YVSPDF  171 (333)
T ss_dssp             EECTTS
T ss_pred             EEeCCC
Confidence            666554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.77  E-value=0.00021  Score=42.71  Aligned_cols=64  Identities=8%  Similarity=-0.017  Sum_probs=48.0

Q ss_pred             EEEEEccCCCEEEEeCCCCc-------------EEEEeCCCCCC-----------CCCEEEEEEccCCCEEEEecCCC--
Q psy16880         17 RSISFCSKQHTLISGGDDGS-------------ICMWNLNSKLC-----------DSAVRSISFCSKQRTLISGGDDG--   70 (84)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~-------------~~~~d~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~--   70 (84)
                      ..++|+|+++.|+.++.+..             +.+|++.+...           ...+..+.|+|+++.++..+.++  
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~  250 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS  250 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence            57899999999888877654             99999876542           24678999999999887766554  


Q ss_pred             --cEEEEeCCCC
Q psy16880         71 --SICMWNLNSK   80 (84)
Q Consensus        71 --~i~~~~~~~~   80 (84)
                        .+.+++..++
T Consensus       251 ~~~l~~~~~~~~  262 (695)
T 2bkl_A          251 ENDVYWKRPGEK  262 (695)
T ss_dssp             EEEEEEECTTCS
T ss_pred             ceEEEEEcCCCC
Confidence              5666665443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.76  E-value=0.00083  Score=35.21  Aligned_cols=66  Identities=8%  Similarity=0.066  Sum_probs=52.3

Q ss_pred             CEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCC
Q psy16880         15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSK   80 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   80 (84)
                      .+..+++++++..+++...++.+..||......       -..+.++++.+++.+.++...++.|.+|+....
T Consensus       151 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~  223 (270)
T 1rwi_B          151 DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  223 (270)
T ss_dssp             SCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred             CceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence            457889999999888777778999999875433       256889999999977777767888999988654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.75  E-value=5.6e-05  Score=45.41  Aligned_cols=66  Identities=8%  Similarity=0.082  Sum_probs=47.5

Q ss_pred             CEEEEEEccCCCEEEEeCCC-----CcEEEEeCCCCCC-C---C--CEEEEEEccCCCEEEEecCCCc------------
Q psy16880         15 AVRSISFCSKQHTLISGGDD-----GSICMWNLNSKLC-D---S--AVRSISFCSKQRTLISGGDDGS------------   71 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~~~~~~-----~~~~~~d~~~~~~-~---~--~v~~~~~~~~~~~~~~~~~~~~------------   71 (84)
                      .+..++|+|+++.++.+..+     ..+.+||+.++.. .   .  .+..++|+|+ +.++.+..+..            
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~  242 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYN  242 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCC
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCC
Confidence            56788999999988766443     4689999987655 1   1  1257889999 88887765443            


Q ss_pred             --EEEEeCCCCe
Q psy16880         72 --ICMWNLNSKL   81 (84)
Q Consensus        72 --i~~~~~~~~~   81 (84)
                        |.+|++.+++
T Consensus       243 ~~v~~~~lgt~~  254 (741)
T 1yr2_A          243 QTVWLHRLGTPQ  254 (741)
T ss_dssp             CEEEEEETTSCG
T ss_pred             CEEEEEECCCCc
Confidence              8888876543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.73  E-value=0.00029  Score=39.58  Aligned_cols=65  Identities=3%  Similarity=-0.063  Sum_probs=48.9

Q ss_pred             EEEccCCCEEEEeCC---------CCcEEEEeCCCCCC------CCCEEEEEEccCCC-EEEEec-CCCcEEEEeCCCCe
Q psy16880         19 ISFCSKQHTLISGGD---------DGSICMWNLNSKLC------DSAVRSISFCSKQR-TLISGG-DDGSICMWNLNSKL   81 (84)
Q Consensus        19 ~~~~~~~~~l~~~~~---------~~~~~~~d~~~~~~------~~~v~~~~~~~~~~-~~~~~~-~~~~i~~~~~~~~~   81 (84)
                      +.++|+++.+..+..         ...+.++|..+...      .....++.|+|+++ .+++.. .++.+.++|+.+.+
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k  348 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence            678999887765432         23556999987765      44688999999987 455555 48999999999988


Q ss_pred             ec
Q psy16880         82 CD   83 (84)
Q Consensus        82 ~~   83 (84)
                      .+
T Consensus       349 vv  350 (368)
T 1mda_H          349 DQ  350 (368)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.72  E-value=0.0011  Score=35.46  Aligned_cols=66  Identities=8%  Similarity=0.206  Sum_probs=50.7

Q ss_pred             cCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEE-EEecCCCcEEEEeCCC
Q psy16880         14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTL-ISGGDDGSICMWNLNS   79 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~-~~~~~~~~i~~~~~~~   79 (84)
                      .....+++++++..+++...++.+..||..+...       ...+.++++.|++..+ ++...++.|..|++..
T Consensus       226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            4567889999999888877788899999874433       3678999999999844 4555567899998754

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.72  E-value=0.0001  Score=42.13  Aligned_cols=65  Identities=8%  Similarity=0.067  Sum_probs=50.6

Q ss_pred             EEEccCCCEEEEeCC----------CCcEEEEeCCCCCC------CCCEEEEEEccCCC-EEEEec-CCCcEEEEeCCCC
Q psy16880         19 ISFCSKQHTLISGGD----------DGSICMWNLNSKLC------DSAVRSISFCSKQR-TLISGG-DDGSICMWNLNSK   80 (84)
Q Consensus        19 ~~~~~~~~~l~~~~~----------~~~~~~~d~~~~~~------~~~v~~~~~~~~~~-~~~~~~-~~~~i~~~~~~~~   80 (84)
                      ++++|++..+.....          .+.+.+.|..+...      .....++.|+|+++ .+++.. .++.+.++|..+.
T Consensus       324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~  403 (426)
T 3c75_H          324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG  403 (426)
T ss_dssp             EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             eEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence            678888776665532          34799999987766      45688999999998 777776 4899999999988


Q ss_pred             eec
Q psy16880         81 LCD   83 (84)
Q Consensus        81 ~~~   83 (84)
                      +.+
T Consensus       404 kvv  406 (426)
T 3c75_H          404 EEL  406 (426)
T ss_dssp             CEE
T ss_pred             CEE
Confidence            765

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.70  E-value=4.6e-05  Score=42.75  Aligned_cols=75  Identities=8%  Similarity=-0.028  Sum_probs=54.9

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeC----------CCCcEEEEeCCCCCC------C--------CCEEEEEEc
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGG----------DDGSICMWNLNSKLC------D--------SAVRSISFC   57 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~~~~~~~~d~~~~~~------~--------~~v~~~~~~   57 (84)
                      ++.+.++... ..+  .+.++|+++.+..++          .++.+.+||..+...      .        .....+.++
T Consensus        56 ~~v~~~i~vG-~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~S  132 (368)
T 1mda_H           56 GVTLGHSLGA-FLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC  132 (368)
T ss_dssp             TEEEEEEEEC-TTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC
T ss_pred             CeEEEEEeCC-CCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEc
Confidence            5566666665 455  689999998877775          367899999988766      2        235689999


Q ss_pred             cCCCEEEEecC--CCcEEE--EeCCC
Q psy16880         58 SKQRTLISGGD--DGSICM--WNLNS   79 (84)
Q Consensus        58 ~~~~~~~~~~~--~~~i~~--~~~~~   79 (84)
                      |++++++.+..  +..+.+  +|..+
T Consensus       133 pDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          133 ASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             TTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             CCCCEEEEEccCCCCeEEEEEEchhh
Confidence            99998887754  356777  77643

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.60  E-value=0.0018  Score=34.62  Aligned_cols=59  Identities=5%  Similarity=-0.033  Sum_probs=44.6

Q ss_pred             EEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----------CCCEEEEEEccCCCEEEE
Q psy16880          6 HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----------DSAVRSISFCSKQRTLIS   65 (84)
Q Consensus         6 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----------~~~v~~~~~~~~~~~~~~   65 (84)
                      ..+..+ ...+..+++++++.++++...++.+.+||..++..           ...+..+++.|+++++++
T Consensus        62 ~~~~~~-~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vt  131 (296)
T 3e5z_A           62 SPEMHP-SHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFS  131 (296)
T ss_dssp             EEEESS-CSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEE
T ss_pred             EEEECC-CCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEE
Confidence            344444 56788999999999888887778899999855443           234567999999988776

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.54  E-value=0.00021  Score=42.82  Aligned_cols=68  Identities=19%  Similarity=0.264  Sum_probs=48.2

Q ss_pred             CcCEEEEEEccCCCEEEE-----eCCCCcEEEEeCCCCCC-----CCC-EEEEEEccCCCEEEEecCCC-----------
Q psy16880         13 NSAVRSISFCSKQHTLIS-----GGDDGSICMWNLNSKLC-----DSA-VRSISFCSKQRTLISGGDDG-----------   70 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~-----~~~~~~~~~~d~~~~~~-----~~~-v~~~~~~~~~~~~~~~~~~~-----------   70 (84)
                      ...+..++|+|+++.++-     |+....+.++|+.++..     ... ...++|+ +++.++.+..+.           
T Consensus       128 ~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~  206 (693)
T 3iuj_A          128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTD  206 (693)
T ss_dssp             CCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CC
T ss_pred             cEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCC
Confidence            345778899999998873     34445788999987764     111 3567899 998888776653           


Q ss_pred             --cEEEEeCCCCe
Q psy16880         71 --SICMWNLNSKL   81 (84)
Q Consensus        71 --~i~~~~~~~~~   81 (84)
                        .|.+|++.+..
T Consensus       207 ~~~v~~~~lgt~~  219 (693)
T 3iuj_A          207 QHKVYFHRLGTAQ  219 (693)
T ss_dssp             CCEEEEEETTSCG
T ss_pred             CcEEEEEECCCCc
Confidence              38888876543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=97.47  E-value=0.003  Score=34.06  Aligned_cols=66  Identities=9%  Similarity=0.042  Sum_probs=49.5

Q ss_pred             CcCEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC-----CCCEEEEEEccCCCEEEEecCCCcEEEEeCC
Q psy16880         13 NSAVRSISFCSKQH-TLISGGDDGSICMWNLNSKLC-----DSAVRSISFCSKQRTLISGGDDGSICMWNLN   78 (84)
Q Consensus        13 ~~~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~   78 (84)
                      ........|+++++ ++.+...++.+..|+......     ...+.++.+.++++++++...++.|.+|+..
T Consensus        44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             CSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence            45567889999988 667777888899998743211     4568899999999876665556778888764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.45  E-value=0.0032  Score=33.88  Aligned_cols=68  Identities=3%  Similarity=0.043  Sum_probs=49.9

Q ss_pred             CEEEEEEccCCCEE-EEeCCCCcEEEEeCC--CCCC------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880         15 AVRSISFCSKQHTL-ISGGDDGSICMWNLN--SKLC------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus        15 ~v~~~~~~~~~~~l-~~~~~~~~~~~~d~~--~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~   79 (84)
                      ....++|+|+++.+ ++....+.+..||+.  .+..            ...+.++++.+++.+.++....+.|..||..+
T Consensus       150 ~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~t  229 (297)
T 3g4e_A          150 ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVT  229 (297)
T ss_dssp             BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTT
T ss_pred             cccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCC
Confidence            35688999999865 555667889999874  2211            24578899999998777766677899999886


Q ss_pred             Cee
Q psy16880         80 KLC   82 (84)
Q Consensus        80 ~~~   82 (84)
                      ++.
T Consensus       230 G~~  232 (297)
T 3g4e_A          230 GKR  232 (297)
T ss_dssp             CCE
T ss_pred             ceE
Confidence            654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.39  E-value=0.0036  Score=33.10  Aligned_cols=65  Identities=15%  Similarity=0.168  Sum_probs=52.0

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEEEEeCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSICMWNLN   78 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~   78 (84)
                      ...+.++++.+++..+++...++.+..||.. ...        ...+..+++.+++...++...++.|..|+..
T Consensus        14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A           14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence            5678999999999988887777889999876 322        3468899999999877776667888888865

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.39  E-value=0.0014  Score=35.64  Aligned_cols=61  Identities=5%  Similarity=0.017  Sum_probs=43.0

Q ss_pred             CcCEEE-EEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcE-EEEeCC
Q psy16880         13 NSAVRS-ISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSI-CMWNLN   78 (84)
Q Consensus        13 ~~~v~~-~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i-~~~~~~   78 (84)
                      ...+.. +.|+ ++ .+++++.++...+| +..+..      ...+..++|+|  ..+++.+.++.. .+|.+.
T Consensus       262 ~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          262 DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            566775 8898 88 88888999999999 763322      45688899998  566666555443 566543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.28  E-value=0.0013  Score=37.28  Aligned_cols=66  Identities=9%  Similarity=0.084  Sum_probs=48.7

Q ss_pred             EEEEccCCCEEEEeCC----------CCcEEEEeCCCCCC------CCCEEEEEEccCCC-EEEEe-cCCCcEEEEeCCC
Q psy16880         18 SISFCSKQHTLISGGD----------DGSICMWNLNSKLC------DSAVRSISFCSKQR-TLISG-GDDGSICMWNLNS   79 (84)
Q Consensus        18 ~~~~~~~~~~l~~~~~----------~~~~~~~d~~~~~~------~~~v~~~~~~~~~~-~~~~~-~~~~~i~~~~~~~   79 (84)
                      .+++++++..+.....          ...+.+.|..+.+.      ...+..+.++++++ .+++. ..++.+.++|..+
T Consensus       284 ~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t  363 (386)
T 3sjl_D          284 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES  363 (386)
T ss_dssp             CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTT
T ss_pred             eeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence            3566787777665532          24688889887766      55778999999986 55554 4588999999998


Q ss_pred             Ceec
Q psy16880         80 KLCD   83 (84)
Q Consensus        80 ~~~~   83 (84)
                      ++.+
T Consensus       364 ~k~~  367 (386)
T 3sjl_D          364 GEEL  367 (386)
T ss_dssp             CCEE
T ss_pred             CcEE
Confidence            8765

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.24  E-value=0.0035  Score=35.53  Aligned_cols=65  Identities=12%  Similarity=0.153  Sum_probs=49.4

Q ss_pred             cCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCC--cEEEEeCCC
Q psy16880         14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDG--SICMWNLNS   79 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~--~i~~~~~~~   79 (84)
                      .....|++++++.++++...++.+..||......      ..... ++|++++..++.+..++  .|.+++...
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~  203 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKAS  203 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGG
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCC
Confidence            3567899999999888888888999999876544      22334 89999998888777655  677777643

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.15  E-value=0.0081  Score=32.29  Aligned_cols=67  Identities=15%  Similarity=0.205  Sum_probs=50.2

Q ss_pred             CcCEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC-----CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880         13 NSAVRSISFCSK-QHTLISGGDDGSICMWNLNSKLC-----DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        13 ~~~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (84)
                      ...-....|+++ +.++.+....+.+..||..+...     ...+.++++.++++++++.  ++.|.+||..+++
T Consensus        12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~   84 (297)
T 3g4e_A           12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQS   84 (297)
T ss_dssp             CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTE
T ss_pred             CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCc
Confidence            344568889995 55677777788999999876544     5678999999999855543  5678899987654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.10  E-value=0.005  Score=37.23  Aligned_cols=63  Identities=8%  Similarity=0.148  Sum_probs=45.2

Q ss_pred             EEEEEccCCCEEEEeCCCC--------------cEEEEeCCCCCC--------C---CCEEEEEEccCCCEEEEecCC--
Q psy16880         17 RSISFCSKQHTLISGGDDG--------------SICMWNLNSKLC--------D---SAVRSISFCSKQRTLISGGDD--   69 (84)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~--------------~~~~~d~~~~~~--------~---~~v~~~~~~~~~~~~~~~~~~--   69 (84)
                      ..++|+|+ +.|+.+..+.              .+.+|++.+...        .   ..+..+.|+|+++.++..+.+  
T Consensus       212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  290 (741)
T 1yr2_A          212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGT  290 (741)
T ss_dssp             CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTT
T ss_pred             ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccC
Confidence            46789999 8777765544              377888865542        1   247889999999988766543  


Q ss_pred             ---CcEEEEeCCCC
Q psy16880         70 ---GSICMWNLNSK   80 (84)
Q Consensus        70 ---~~i~~~~~~~~   80 (84)
                         ..+.+||+.++
T Consensus       291 ~~~~~l~~~d~~~~  304 (741)
T 1yr2_A          291 DPVNTVHVARVTNG  304 (741)
T ss_dssp             CSCCEEEEEEEETT
T ss_pred             CCcceEEEEECCCC
Confidence               37899988655

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.05  E-value=0.00074  Score=37.65  Aligned_cols=59  Identities=14%  Similarity=0.170  Sum_probs=36.0

Q ss_pred             CCCEEEEeCCCCcEEEEeCCCCCC-----CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880         24 KQHTLISGGDDGSICMWNLNSKLC-----DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        24 ~~~~l~~~~~~~~~~~~d~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                      ++..+++++.++.+..||..++..     ...+....+..++..++.++.++.+..||..+++.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~   71 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG   71 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEECCCSCCCC-----CCEEECTTTCCEEEC-----CC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecCCCceecceEcCCCEEEEeCCCCEEEEEECCCCce
Confidence            567888889999999999887665     22222333344566677778899999999877654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=96.99  E-value=0.013  Score=31.96  Aligned_cols=65  Identities=11%  Similarity=0.032  Sum_probs=47.4

Q ss_pred             CEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC-----CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880         15 AVRSISFCSK-QHTLISGGDDGSICMWNLNSKLC-----DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        15 ~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (84)
                      ......|+|+ +..+.+....+.+..||......     ...+.++.+.+++++++.. . ..+.+||..+++
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~  120 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGV  120 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCC
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCc
Confidence            3467889996 45666777778899999876543     4678999999998866654 3 348888876654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.91  E-value=0.014  Score=30.84  Aligned_cols=65  Identities=11%  Similarity=-0.077  Sum_probs=49.9

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEEEEeCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSICMWNLN   78 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~   78 (84)
                      ...+..+++.+++..+++....+.+..||. ....        ...+.++++.+++...++...++.|..|+..
T Consensus       182 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          182 ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred             CCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence            455778999999998887777788988988 3332        2568899999998866665567889999873

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=96.90  E-value=0.00039  Score=38.74  Aligned_cols=63  Identities=13%  Similarity=0.085  Sum_probs=36.7

Q ss_pred             EEccCCCEEEEeCCCCcEEEEeCCCCCCCCCEE-----EEEEccCC---CEEEEecCCCcEEEEeCCCCee
Q psy16880         20 SFCSKQHTLISGGDDGSICMWNLNSKLCDSAVR-----SISFCSKQ---RTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~v~-----~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                      ..+|++..++.++.++.+..||..++.......     ...+.++.   ..++.++.++.+..||.++++.
T Consensus       125 ~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          125 SLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV  195 (369)
T ss_dssp             --------EEEEEEEEEEECCCSSSSSCCCEEEEEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred             cccccCCEEEEEecCCEEEEEECCCCCEEEeEecccccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence            345677788888888999999998766511111     11122211   3466777889999999988764

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=96.85  E-value=0.014  Score=32.06  Aligned_cols=69  Identities=14%  Similarity=0.125  Sum_probs=48.0

Q ss_pred             CcCEEEEEEccCCCEEEEeCC-----CCcEEEEeCCCCCC-------------CCCEEEEEEccCC-CEEEEec---CCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGD-----DGSICMWNLNSKLC-------------DSAVRSISFCSKQ-RTLISGG---DDG   70 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~-----~~~~~~~d~~~~~~-------------~~~v~~~~~~~~~-~~~~~~~---~~~   70 (84)
                      ...+..++++++++++++-..     ...+..||..+...             ...+..+++.+++ ...++-.   .++
T Consensus        66 ~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~  145 (343)
T 2qe8_A           66 FDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKA  145 (343)
T ss_dssp             CSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGC
T ss_pred             eeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCC
Confidence            456889999999887665433     46888999876542             1245788998754 4444544   567


Q ss_pred             cEEEEeCCCCe
Q psy16880         71 SICMWNLNSKL   81 (84)
Q Consensus        71 ~i~~~~~~~~~   81 (84)
                      .|.+||+.+++
T Consensus       146 ~i~v~d~~~g~  156 (343)
T 2qe8_A          146 ALIRVDLQTGL  156 (343)
T ss_dssp             EEEEEETTTCC
T ss_pred             eEEEEECCCCC
Confidence            89999987654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=96.84  E-value=0.017  Score=30.87  Aligned_cols=65  Identities=9%  Similarity=0.043  Sum_probs=47.1

Q ss_pred             CcCEEEEEEccCCCEEEE-------eCCCCcEEEEeCCCCCC----C-------CCEEEEEEccC-CCEEEEecCCCcEE
Q psy16880         13 NSAVRSISFCSKQHTLIS-------GGDDGSICMWNLNSKLC----D-------SAVRSISFCSK-QRTLISGGDDGSIC   73 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~-------~~~~~~~~~~d~~~~~~----~-------~~v~~~~~~~~-~~~~~~~~~~~~i~   73 (84)
                      ......++|++++..+++       ...++.+..||..+...    .       ..+.++.+.++ +.++++.. .+.+.
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~   95 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLL   95 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEE
Confidence            344578999999988887       56678899998755443    2       56888999998 76555443 44688


Q ss_pred             EEeCC
Q psy16880         74 MWNLN   78 (84)
Q Consensus        74 ~~~~~   78 (84)
                      +|+..
T Consensus        96 ~~d~~  100 (314)
T 1pjx_A           96 VVQTD  100 (314)
T ss_dssp             EEETT
T ss_pred             EEeCC
Confidence            88876

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=96.81  E-value=0.024  Score=32.18  Aligned_cols=64  Identities=6%  Similarity=0.037  Sum_probs=48.8

Q ss_pred             EEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC-----C---------------CCEEEEEEccCCCEEEEec-CCCcEEEE
Q psy16880         18 SISFCS-KQHTLISGGDDGSICMWNLNSKLC-----D---------------SAVRSISFCSKQRTLISGG-DDGSICMW   75 (84)
Q Consensus        18 ~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~-----~---------------~~v~~~~~~~~~~~~~~~~-~~~~i~~~   75 (84)
                      .++++| ++.++++-...+.+..|+......     .               .....+++.+++.+.++-. .++.|+.|
T Consensus       271 ~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~  350 (409)
T 3hrp_A          271 YLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKL  350 (409)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEE
T ss_pred             cEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEE
Confidence            889999 466777777788899888764211     1               3478999999999777777 78899999


Q ss_pred             eCCCCe
Q psy16880         76 NLNSKL   81 (84)
Q Consensus        76 ~~~~~~   81 (84)
                      ++.++.
T Consensus       351 ~~~~G~  356 (409)
T 3hrp_A          351 DILDGY  356 (409)
T ss_dssp             ETTTTE
T ss_pred             ECCCCE
Confidence            976654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.75  E-value=0.0035  Score=37.78  Aligned_cols=49  Identities=12%  Similarity=0.223  Sum_probs=35.8

Q ss_pred             CcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         35 GSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        35 ~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      +.+..||+.+++.      ...+....+...+..++.++.++.+++||.++++.+
T Consensus       457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l  511 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL  511 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence            6788899887765      222333444556667888888999999999998865

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.75  E-value=0.0036  Score=37.85  Aligned_cols=49  Identities=10%  Similarity=0.237  Sum_probs=35.6

Q ss_pred             CcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         35 GSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        35 ~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      +.+..||+.+++.      ......-.+...+..++.++.|+.++.||.++++.+
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l  509 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL  509 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             eeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence            6688899987765      222222344445667888899999999999998864

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.66  E-value=0.026  Score=30.53  Aligned_cols=68  Identities=9%  Similarity=0.168  Sum_probs=47.8

Q ss_pred             cCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----CCCEEEEEEccCCCEEEEecCCC--cEEEEeCCCCe
Q psy16880         14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----DSAVRSISFCSKQRTLISGGDDG--SICMWNLNSKL   81 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~   81 (84)
                      .....++|++++.++++-...+.+..+|......     ...+.++++.++++.+++....+  .+..++..+++
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~  106 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT  106 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence            4567899999999888877888888888764322     45688899999998655543322  36666665544

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=96.58  E-value=0.02  Score=31.42  Aligned_cols=69  Identities=10%  Similarity=0.020  Sum_probs=45.8

Q ss_pred             cCEEEEEEccCCCEEEEeC--CCCcEEEEeCCCCCC-------------CCCEEEEEEccCCCEEEEecC-----CCcEE
Q psy16880         14 SAVRSISFCSKQHTLISGG--DDGSICMWNLNSKLC-------------DSAVRSISFCSKQRTLISGGD-----DGSIC   73 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~~~~--~~~~~~~~d~~~~~~-------------~~~v~~~~~~~~~~~~~~~~~-----~~~i~   73 (84)
                      .....++++++++.+++..  .++..++|.+..+..             -..+.++++.+++++.++-..     +..|.
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~   96 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV   96 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence            4678899999999988853  223234444322211             246899999999876555433     57899


Q ss_pred             EEeCCCCee
Q psy16880         74 MWNLNSKLC   82 (84)
Q Consensus        74 ~~~~~~~~~   82 (84)
                      +||+.+++.
T Consensus        97 ~~d~~tg~~  105 (343)
T 2qe8_A           97 AWDTLNNQL  105 (343)
T ss_dssp             EEETTTTEE
T ss_pred             EEECCCCeE
Confidence            999987763

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=96.56  E-value=0.028  Score=29.67  Aligned_cols=65  Identities=11%  Similarity=0.063  Sum_probs=51.5

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEEEEeCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSICMWNLN   78 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~   78 (84)
                      ...+..+.+.+++..+++...++.+..||.. ...        ...+..+++.+++...++...++.|..+|..
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~   91 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK   91 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC
Confidence            4567899999999988888778889999876 322        2568899999988877776667788888876

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=96.49  E-value=0.032  Score=29.46  Aligned_cols=65  Identities=11%  Similarity=0.004  Sum_probs=50.3

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEEEEeCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSICMWNLN   78 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~   78 (84)
                      ...+..+++.+++..+++...++.+..+|.. ...        ...+..+++.+++...++...++.+..++..
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~  133 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD  133 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC
Confidence            3567889999999988887777888888876 322        3568899999988877776667788888776

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.46  E-value=0.037  Score=29.94  Aligned_cols=78  Identities=10%  Similarity=0.118  Sum_probs=48.8

Q ss_pred             ceEEEeccCCC-cCEEEEEEccCCCEEEEeCC--CCcEEEEeCCCCCC------CCCE--EEEEEccCCCEEE-EecCCC
Q psy16880          3 SIIHTFVHSNN-SAVRSISFCSKQHTLISGGD--DGSICMWNLNSKLC------DSAV--RSISFCSKQRTLI-SGGDDG   70 (84)
Q Consensus         3 ~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~--~~~~~~~d~~~~~~------~~~v--~~~~~~~~~~~~~-~~~~~~   70 (84)
                      +.+.++..- . .....+.|++++.++.+.+.  ...+.++|..+...      ....  ..+.+.  +..+. +.-.++
T Consensus        10 ~vv~~~p~~-~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~   86 (266)
T 2iwa_A           10 EVLNEFPHD-PYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN   86 (266)
T ss_dssp             EEEEEEECC-TTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred             eEEEEEECC-CCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence            345555332 2 23578999988766665543  57899999987765      2222  234443  43444 444578


Q ss_pred             cEEEEeCCCCeec
Q psy16880         71 SICMWNLNSKLCD   83 (84)
Q Consensus        71 ~i~~~~~~~~~~~   83 (84)
                      .+.++|..+.+.+
T Consensus        87 ~v~viD~~t~~v~   99 (266)
T 2iwa_A           87 IGFIYDRRTLSNI   99 (266)
T ss_dssp             EEEEEETTTTEEE
T ss_pred             EEEEEECCCCcEE
Confidence            8999999887654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=96.37  E-value=0.033  Score=33.57  Aligned_cols=64  Identities=11%  Similarity=0.153  Sum_probs=48.5

Q ss_pred             EEEEEEccCCCEEE-EeCCCCcEEEEeCCCCC------------C------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880         16 VRSISFCSKQHTLI-SGGDDGSICMWNLNSKL------------C------DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus        16 v~~~~~~~~~~~l~-~~~~~~~~~~~d~~~~~------------~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      ...+.++|+|++++ ++.....+.++|..+..            .      .....+++|+|++....+.-.++.+.+||
T Consensus       279 PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwd  358 (595)
T 1fwx_A          279 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWN  358 (595)
T ss_dssp             CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEE
Confidence            35789999998665 55577799999998541            1      56789999999994334555689999999


Q ss_pred             CCC
Q psy16880         77 LNS   79 (84)
Q Consensus        77 ~~~   79 (84)
                      +..
T Consensus       359 i~~  361 (595)
T 1fwx_A          359 IED  361 (595)
T ss_dssp             HHH
T ss_pred             hhH
Confidence            754

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=96.35  E-value=0.043  Score=29.53  Aligned_cols=52  Identities=4%  Similarity=-0.028  Sum_probs=38.8

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----------CCCEEEEEEccCCCEEEE
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----------DSAVRSISFCSKQRTLIS   65 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----------~~~v~~~~~~~~~~~~~~   65 (84)
                      ...+..++++++++++++....+.+..|+.. +..           ...+..+.+.+++++.++
T Consensus        85 ~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~t  147 (305)
T 3dr2_A           85 TAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFT  147 (305)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEE
T ss_pred             CCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEe
Confidence            5567889999999987776666788888875 222           234567899999987776

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=96.27  E-value=0.04  Score=32.20  Aligned_cols=65  Identities=17%  Similarity=0.188  Sum_probs=47.0

Q ss_pred             EEEEEccCCCEEEEeCCC------CcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEec-------------
Q psy16880         17 RSISFCSKQHTLISGGDD------GSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGG-------------   67 (84)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~------~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~-------------   67 (84)
                      ..+...|++ .++++..+      +.+.+.|..+...          ...-+.+-|+|+++.+++..             
T Consensus       141 h~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~  219 (462)
T 2ece_A          141 HTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKL  219 (462)
T ss_dssp             EEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCT
T ss_pred             cceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccch
Confidence            455678888 66666544      6899999886655          12234578899999888774             


Q ss_pred             ------CCCcEEEEeCCCCee
Q psy16880         68 ------DDGSICMWNLNSKLC   82 (84)
Q Consensus        68 ------~~~~i~~~~~~~~~~   82 (84)
                            ..++|.+||+.+++.
T Consensus       220 ~~~~~~~~d~V~v~D~~~~k~  240 (462)
T 2ece_A          220 EHLKDRYGNRIHFWDLRKRKR  240 (462)
T ss_dssp             TTHHHHSCCEEEEEETTTTEE
T ss_pred             hhhhhccCCEEEEEECCCCcE
Confidence                  368999999987754

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.19  E-value=0.045  Score=29.28  Aligned_cols=57  Identities=7%  Similarity=-0.024  Sum_probs=37.3

Q ss_pred             CCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         25 QHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        25 ~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      .+.+.....++.+.++|..+...      ...-.+++  +++..+..+..++.|.++|+.+.+.+
T Consensus        75 ~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~  137 (243)
T 3mbr_X           75 DRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQV  137 (243)
T ss_dssp             TEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEE
T ss_pred             CEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEE
Confidence            34455556778899999987655      22222333  45555666566888999999886643

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.16  E-value=0.058  Score=29.19  Aligned_cols=65  Identities=2%  Similarity=-0.077  Sum_probs=40.7

Q ss_pred             EEEEccCCCEEEEeCCCCcEEEEeCCCCCC----C-CCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         18 SISFCSKQHTLISGGDDGSICMWNLNSKLC----D-SAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----~-~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      .+++. .+..+.+...++.+.++|..+...    . ..-....+++++..++.+..++.+.+.|..+.+.+
T Consensus        70 Gi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~  139 (266)
T 2iwa_A           70 GLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLI  139 (266)
T ss_dssp             EEEEE-TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEE
T ss_pred             EEEEe-CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEE
Confidence            34443 234556666788999999886654    1 10122335556666666666889999999886643

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.14  E-value=0.014  Score=35.63  Aligned_cols=66  Identities=8%  Similarity=0.023  Sum_probs=43.8

Q ss_pred             CEEEEEEc-cCCCEEEEeC-CC----CcEEEEeCCCC-CC-----CCCEEEEEEccCCCEEEEecCC-----CcEEEEeC
Q psy16880         15 AVRSISFC-SKQHTLISGG-DD----GSICMWNLNSK-LC-----DSAVRSISFCSKQRTLISGGDD-----GSICMWNL   77 (84)
Q Consensus        15 ~v~~~~~~-~~~~~l~~~~-~~----~~~~~~d~~~~-~~-----~~~v~~~~~~~~~~~~~~~~~~-----~~i~~~~~   77 (84)
                      .+...+|+ |+++.++-.. ..    ..+.++|+.++ ..     ......+.|+|+++.++....+     ..|..+++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l  254 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM  254 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence            46778999 9999776432 22    35889999876 43     1223467899999877766544     24666676


Q ss_pred             CCC
Q psy16880         78 NSK   80 (84)
Q Consensus        78 ~~~   80 (84)
                      .++
T Consensus       255 gt~  257 (751)
T 2xe4_A          255 GKL  257 (751)
T ss_dssp             TSC
T ss_pred             CCC
Confidence            554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=96.07  E-value=0.04  Score=29.84  Aligned_cols=57  Identities=11%  Similarity=0.062  Sum_probs=35.8

Q ss_pred             CEEEEeCCCCcEEEEeCCCCCC----CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880         26 HTLISGGDDGSICMWNLNSKLC----DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        26 ~~l~~~~~~~~~~~~d~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                      +.......++.+.++|..+...    .-.-.+..+++++..+.....++.|.++|+.+.+.
T Consensus        98 ~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v  158 (262)
T 3nol_A           98 KIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTP  158 (262)
T ss_dssp             EEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSE
T ss_pred             EEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeE
Confidence            3444455678899999987655    10112223334566666666678899999987654

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=95.84  E-value=0.12  Score=32.71  Aligned_cols=35  Identities=20%  Similarity=0.262  Sum_probs=29.6

Q ss_pred             CCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         49 SAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        49 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      ..+.++...++...+.+.+.|+++++|++.+++++
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v  270 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV  270 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeE
Confidence            35667777778889999999999999999998875

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=95.63  E-value=0.11  Score=28.17  Aligned_cols=67  Identities=13%  Similarity=0.107  Sum_probs=43.9

Q ss_pred             EEEEEEccCCCEEEEeCCCC--cEEEEeCCCCCC------CCCEEEEEEccCCCEEEEec-CCCcEEEEeCCCCeec
Q psy16880         16 VRSISFCSKQHTLISGGDDG--SICMWNLNSKLC------DSAVRSISFCSKQRTLISGG-DDGSICMWNLNSKLCD   83 (84)
Q Consensus        16 v~~~~~~~~~~~l~~~~~~~--~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~   83 (84)
                      ...+.|+ ++.++.+.+..+  .++.+|..+++.      ..........+.+..+.... .++.+.++|..+.+.+
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~  120 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQV  120 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEE
Confidence            4667777 666777777665  889999988766      33333333333344454444 4788999999887654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=95.48  E-value=0.13  Score=28.07  Aligned_cols=65  Identities=11%  Similarity=0.076  Sum_probs=45.7

Q ss_pred             cCEEEEEEccCCCEE-EEeCCCCcEEEEeCC--CC-CC------------CCCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880         14 SAVRSISFCSKQHTL-ISGGDDGSICMWNLN--SK-LC------------DSAVRSISFCSKQRTLISGGDDGSICMWNL   77 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l-~~~~~~~~~~~~d~~--~~-~~------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (84)
                      .....++|+|+++.+ ++....+.+.+||+.  .+ ..            ...+..+++.+++.+.++...++.|..|+.
T Consensus       179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence            345688999999865 455567789999975  33 21            234677888888886666555678999987


Q ss_pred             C
Q psy16880         78 N   78 (84)
Q Consensus        78 ~   78 (84)
                      .
T Consensus       259 ~  259 (326)
T 2ghs_A          259 D  259 (326)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.46  E-value=0.18  Score=29.50  Aligned_cols=64  Identities=14%  Similarity=0.220  Sum_probs=47.7

Q ss_pred             CEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------------------------CCCEEEEEEccC---CCEEEEe
Q psy16880         15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------------------------DSAVRSISFCSK---QRTLISG   66 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------------------------~~~v~~~~~~~~---~~~~~~~   66 (84)
                      .|..+..+|+|.+|+..+.. .+.+-.+..+..                         +..|..+.|+|-   +..+++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            56788899999999877654 566555542210                         256999999994   4578888


Q ss_pred             cCCCcEEEEeCCC
Q psy16880         67 GDDGSICMWNLNS   79 (84)
Q Consensus        67 ~~~~~i~~~~~~~   79 (84)
                      ..|+.|++||+..
T Consensus       146 tsD~~Ir~yDl~~  158 (452)
T 3pbp_A          146 KEDDTITMFDILN  158 (452)
T ss_dssp             ETTSCEEEEETTC
T ss_pred             ecCCEEEEEEccc
Confidence            8899999999875

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=95.21  E-value=0.26  Score=29.88  Aligned_cols=63  Identities=11%  Similarity=0.149  Sum_probs=43.3

Q ss_pred             EEEEEccCCCEEEEeCCC-------------CcEEEEeCCCCCC--------CC----CEEEEEEccCCCEEEEec----
Q psy16880         17 RSISFCSKQHTLISGGDD-------------GSICMWNLNSKLC--------DS----AVRSISFCSKQRTLISGG----   67 (84)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~-------------~~~~~~d~~~~~~--------~~----~v~~~~~~~~~~~~~~~~----   67 (84)
                      ..++|+ +++.|+....+             ..+.+|++.+...        ..    ....+.++|+++.++...    
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~  256 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST  256 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence            466899 99888776655             3488888865542        22    367889999999775432    


Q ss_pred             CCCcEEEEeCCCC
Q psy16880         68 DDGSICMWNLNSK   80 (84)
Q Consensus        68 ~~~~i~~~~~~~~   80 (84)
                      .++.+.++++.++
T Consensus       257 ~~~~i~~~d~~~~  269 (693)
T 3iuj_A          257 SGNRLYVKDLSQE  269 (693)
T ss_dssp             SCCEEEEEETTST
T ss_pred             CCcEEEEEECCCC
Confidence            2357899997654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=95.17  E-value=0.085  Score=31.40  Aligned_cols=50  Identities=14%  Similarity=0.034  Sum_probs=32.5

Q ss_pred             CCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         34 DGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        34 ~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      .+.+..||..+++.      ...+........+..++.++.++.+..+|.++++.+
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l  498 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence            46788888877655      112222222223456777888999999999988764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=94.78  E-value=0.35  Score=29.16  Aligned_cols=65  Identities=12%  Similarity=0.251  Sum_probs=43.4

Q ss_pred             EEEEcc-CCCEEEEeCCCC-----------cEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecC-CCcEEE
Q psy16880         18 SISFCS-KQHTLISGGDDG-----------SICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGD-DGSICM   74 (84)
Q Consensus        18 ~~~~~~-~~~~l~~~~~~~-----------~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~-~~~i~~   74 (84)
                      ..++.+ +++.++.|+.+.           .+.+||..+..-          .....++++..++++++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            455666 778888775432           467888876543          122334677788888888884 457999


Q ss_pred             EeCCCCee
Q psy16880         75 WNLNSKLC   82 (84)
Q Consensus        75 ~~~~~~~~   82 (84)
                      ||+.+.+.
T Consensus       270 yd~~t~~W  277 (656)
T 1k3i_A          270 YDSSSDSW  277 (656)
T ss_dssp             EEGGGTEE
T ss_pred             ecCcCCce
Confidence            99876553

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=94.70  E-value=0.39  Score=29.33  Aligned_cols=66  Identities=14%  Similarity=0.123  Sum_probs=44.1

Q ss_pred             EEEEccCCCEEEEeCCCCc-------------------EEEEeCCCCCC-----C-----------CCEEEEEEccCCC-
Q psy16880         18 SISFCSKQHTLISGGDDGS-------------------ICMWNLNSKLC-----D-----------SAVRSISFCSKQR-   61 (84)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~-------------------~~~~d~~~~~~-----~-----------~~v~~~~~~~~~~-   61 (84)
                      .+++.|+...++.+..++.                   +..+|..++..     .           ..........+++ 
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~  318 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP  318 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence            5678888888888877653                   78889887665     0           0111111112343 


Q ss_pred             --EEEEecCCCcEEEEeCCCCeec
Q psy16880         62 --TLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        62 --~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                        .++.++.++.++++|..+++.+
T Consensus       319 ~~~v~~~~~~G~l~~lD~~tG~~l  342 (689)
T 1yiq_A          319 RKVLMQAPKNGFFYVIDRATGELL  342 (689)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEE
T ss_pred             EEEEEEECCCCeEEEEECCCCCEe
Confidence              5777888999999999998864

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=94.56  E-value=0.33  Score=27.87  Aligned_cols=62  Identities=8%  Similarity=0.049  Sum_probs=44.6

Q ss_pred             EEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEE-EEecCCCcEEEEeCC
Q psy16880         17 RSISFCS-KQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTL-ISGGDDGSICMWNLN   78 (84)
Q Consensus        17 ~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~-~~~~~~~~i~~~~~~   78 (84)
                      ..++++| ++.++++-...+.+..++......        .....+++|+|+++.+ ++-...+.|..++..
T Consensus       229 ~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          229 NGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             CCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             eEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            5677898 777777777778888888864432        2347889999999844 454556788887654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.53  E-value=0.15  Score=32.91  Aligned_cols=33  Identities=21%  Similarity=0.262  Sum_probs=26.7

Q ss_pred             EEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         51 VRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        51 v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      +.+++..++...+.+.+.|+++++|++.+++++
T Consensus       240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v  272 (1139)
T 4fhn_B          240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV  272 (1139)
T ss_dssp             BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEE
T ss_pred             eEEeeccCCccEEEEEeCCCEEEEEECCCCCeE
Confidence            344455567788999999999999999998875

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=94.50  E-value=0.38  Score=28.30  Aligned_cols=61  Identities=13%  Similarity=0.146  Sum_probs=42.7

Q ss_pred             EEEEEccCCCEEEEeC-------------------CCCcEEEEeCCCCCC------C---CCEEEEEE--ccCCCEEEEe
Q psy16880         17 RSISFCSKQHTLISGG-------------------DDGSICMWNLNSKLC------D---SAVRSISF--CSKQRTLISG   66 (84)
Q Consensus        17 ~~~~~~~~~~~l~~~~-------------------~~~~~~~~d~~~~~~------~---~~v~~~~~--~~~~~~~~~~   66 (84)
                      ..+.|+|+++.+++..                   ....|.+||+.+...      .   .....+.|  +|+++...++
T Consensus       191 Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~  270 (462)
T 2ece_A          191 YDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFIN  270 (462)
T ss_dssp             CCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEE
T ss_pred             ceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEE
Confidence            3477899999888874                   367999999986543      2   24556656  8999888766


Q ss_pred             c------CCCcEEEEeC
Q psy16880         67 G------DDGSICMWNL   77 (84)
Q Consensus        67 ~------~~~~i~~~~~   77 (84)
                      +      .+++|.+|..
T Consensus       271 ~e~~~~~Lss~V~v~~~  287 (462)
T 2ece_A          271 MVVSLKDLSSSIWLWFY  287 (462)
T ss_dssp             EEEETTTCCEEEEEEEE
T ss_pred             EeeeccCCCceEEEEEe
Confidence            6      4557766543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=94.47  E-value=0.4  Score=29.52  Aligned_cols=63  Identities=11%  Similarity=0.115  Sum_probs=40.8

Q ss_pred             EEEEccCCCEEEEeCCC-----CcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecC---CCcEEEEeCCC
Q psy16880         18 SISFCSKQHTLISGGDD-----GSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGD---DGSICMWNLNS   79 (84)
Q Consensus        18 ~~~~~~~~~~l~~~~~~-----~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~---~~~i~~~~~~~   79 (84)
                      .+.|+|+++.|+....+     ..+..+++.+...          ......+.|+|+++.++....   ...+.++|+.+
T Consensus       225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence            57899999876655443     2466677755421          233567889999998765442   34577778765


Q ss_pred             C
Q psy16880         80 K   80 (84)
Q Consensus        80 ~   80 (84)
                      +
T Consensus       305 ~  305 (751)
T 2xe4_A          305 G  305 (751)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=94.34  E-value=0.48  Score=28.88  Aligned_cols=66  Identities=12%  Similarity=0.176  Sum_probs=43.3

Q ss_pred             EEEEccCCCEEEEeCCCC-------------------cEEEEeCCCCCC-------C---------CCEEEEEEccCC--
Q psy16880         18 SISFCSKQHTLISGGDDG-------------------SICMWNLNSKLC-------D---------SAVRSISFCSKQ--   60 (84)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~-------------------~~~~~d~~~~~~-------~---------~~v~~~~~~~~~--   60 (84)
                      .+++++++..+..+..++                   .+..+|..++..       .         ....-+....++  
T Consensus       247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~  326 (677)
T 1kb0_A          247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKP  326 (677)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEE
T ss_pred             ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcE
Confidence            467788888877776553                   477788876654       0         011112222245  


Q ss_pred             -CEEEEecCCCcEEEEeCCCCeec
Q psy16880         61 -RTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        61 -~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                       ..++.++.++.+.++|..+++.+
T Consensus       327 ~~~l~~~~~~G~l~~lD~~tG~~l  350 (677)
T 1kb0_A          327 RKVILHAPKNGFFFVLDRTNGKFI  350 (677)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEE
T ss_pred             eeEEEEECCCCEEEEEECCCCCEe
Confidence             56778888999999999988764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=94.05  E-value=0.1  Score=31.18  Aligned_cols=50  Identities=14%  Similarity=0.080  Sum_probs=32.1

Q ss_pred             CCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         34 DGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        34 ~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      .+.+..||+.+++.      ...+..-.....+..++.++.|+.++.+|.++++.+
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~l  520 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEE
Confidence            46788888877655      111111111113456777889999999999988764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=93.96  E-value=0.36  Score=25.99  Aligned_cols=70  Identities=16%  Similarity=0.212  Sum_probs=48.9

Q ss_pred             EeccCCCcCEEEEEEccCCCEE-EEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880          7 TFVHSNNSAVRSISFCSKQHTL-ISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSICMWNL   77 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~~~~~l-~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (84)
                      .+.+- .+.+..++|+|++..| +....++.+...|.. +..        ....-++++.+++.++++.-.++.+.++++
T Consensus        21 ~l~g~-~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           21 EIAGI-TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             ECTTC-CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             ECCCc-ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            45565 5789999999976655 446667777777876 333        246778888888876666555677777765


Q ss_pred             C
Q psy16880         78 N   78 (84)
Q Consensus        78 ~   78 (84)
                      .
T Consensus        99 ~   99 (255)
T 3qqz_A           99 T   99 (255)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=93.73  E-value=0.57  Score=27.51  Aligned_cols=61  Identities=18%  Similarity=0.352  Sum_probs=43.7

Q ss_pred             CcCEEEEEEccC---CCEEEEeCCCCcEEEEeCCCCCC-----------------CCCEEEEEEccCCCEEEE--ecCCC
Q psy16880         13 NSAVRSISFCSK---QHTLISGGDDGSICMWNLNSKLC-----------------DSAVRSISFCSKQRTLIS--GGDDG   70 (84)
Q Consensus        13 ~~~v~~~~~~~~---~~~l~~~~~~~~~~~~d~~~~~~-----------------~~~v~~~~~~~~~~~~~~--~~~~~   70 (84)
                      ..+|..+.|+|-   +..|+.=..|+.+++||+.....                 ...+..++|.+++-.+..  ....|
T Consensus       124 ~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~G  203 (452)
T 3pbp_A          124 KSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGG  203 (452)
T ss_dssp             CCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSC
T ss_pred             CCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCC
Confidence            467999999994   46898889999999999975211                 256788888876654444  33555


Q ss_pred             cEE
Q psy16880         71 SIC   73 (84)
Q Consensus        71 ~i~   73 (84)
                      -|.
T Consensus       204 DIY  206 (452)
T 3pbp_A          204 DIF  206 (452)
T ss_dssp             EEE
T ss_pred             CEE
Confidence            554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=93.67  E-value=0.15  Score=30.93  Aligned_cols=49  Identities=8%  Similarity=0.209  Sum_probs=34.1

Q ss_pred             CcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         35 GSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        35 ~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      +.+..||..+++.      ............+..++.++.++.++.||.++++.+
T Consensus       438 g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l  492 (668)
T 1kv9_A          438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (668)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence            6788899887765      222222233335667888888999999999988754

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=93.66  E-value=0.41  Score=25.66  Aligned_cols=79  Identities=11%  Similarity=0.152  Sum_probs=47.6

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEEEEeCCC--CcEEEEeCCCCCC------CCCEEEEEEccCCCEEEE-ecCCCcEEE
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDD--GSICMWNLNSKLC------DSAVRSISFCSKQRTLIS-GGDDGSICM   74 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~-~~~~~~i~~   74 (84)
                      .++++..........+.|+. +.++.+.+..  ..++.+|..++..      ..........+.+..+.. .-.++.+.+
T Consensus        11 v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v   89 (243)
T 3mbr_X           11 VVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFV   89 (243)
T ss_dssp             EEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred             EEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEE
Confidence            45555221023456788875 5666666665  4899999988766      333333333333444443 345788999


Q ss_pred             EeCCCCeec
Q psy16880         75 WNLNSKLCD   83 (84)
Q Consensus        75 ~~~~~~~~~   83 (84)
                      +|..+.+.+
T Consensus        90 ~D~~tl~~~   98 (243)
T 3mbr_X           90 YDLATLTPR   98 (243)
T ss_dssp             EETTTTEEE
T ss_pred             EECCcCcEE
Confidence            999887754

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=93.43  E-value=0.49  Score=25.82  Aligned_cols=66  Identities=15%  Similarity=0.197  Sum_probs=41.9

Q ss_pred             EEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----CCCEEE--EEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----DSAVRS--ISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        16 v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----~~~v~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      ...+.|+ ++.++.+.+.++.++.+|+.+++.     ......  +.+..+ +.....-.++.+.++|..+.+.+
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~~  129 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQRE  129 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSS-CEEEEESSSCEEEEEETTTTEEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCC-EEEEEEccCCEEEEEECCcCcEE
Confidence            4567776 466777888888899999987766     222222  333322 33333345778889998887654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=93.23  E-value=0.82  Score=27.83  Aligned_cols=45  Identities=4%  Similarity=0.080  Sum_probs=32.9

Q ss_pred             cEEEEeCCC--CCC-------CCCEEEEEEccCCCEEEEec-CCCcEEEEeCCCC
Q psy16880         36 SICMWNLNS--KLC-------DSAVRSISFCSKQRTLISGG-DDGSICMWNLNSK   80 (84)
Q Consensus        36 ~~~~~d~~~--~~~-------~~~v~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~   80 (84)
                      .+.+.|..+  ...       .....++.++|++++++..+ .++.+.++|+.+.
T Consensus       255 ~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~  309 (595)
T 1fwx_A          255 GVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF  309 (595)
T ss_dssp             TEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred             cEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence            477778775  211       45678899999999776554 5788999998754

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=92.88  E-value=0.64  Score=25.65  Aligned_cols=57  Identities=7%  Similarity=0.067  Sum_probs=36.3

Q ss_pred             CCCEEEEeCCCCcEEEEeCCCCCC------CCCEE-EEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880         24 KQHTLISGGDDGSICMWNLNSKLC------DSAVR-SISFCSKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        24 ~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                      .+..+..++.++.+..+|..++..      ...+. .....  +..++.++.++.+..+|..+++.
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~  165 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAV  165 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcE
Confidence            455667777888899999876654      11111 11111  23566777788899999887764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=92.73  E-value=0.65  Score=25.34  Aligned_cols=60  Identities=2%  Similarity=-0.086  Sum_probs=40.1

Q ss_pred             cCCCEEEEeCCCCcEEEEeCCCCCC------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         23 SKQHTLISGGDDGSICMWNLNSKLC------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        23 ~~~~~l~~~~~~~~~~~~d~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      +++..|+.......+.++|..+...            -..+..+.|. ++...+..-.++.|.+-|+.+++.+
T Consensus       143 ~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~  214 (268)
T 3nok_A          143 YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVV  214 (268)
T ss_dssp             EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEE
T ss_pred             cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEE
Confidence            3566666666688888888876554            1134455655 5655555556788888898888754

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=92.48  E-value=0.81  Score=25.81  Aligned_cols=65  Identities=12%  Similarity=0.145  Sum_probs=45.8

Q ss_pred             CEEEEEEccCCCEEEEeCCC-CcEEEEeCCCCCC------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880         15 AVRSISFCSKQHTLISGGDD-GSICMWNLNSKLC------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~~~~~~-~~~~~~d~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~   79 (84)
                      ....|+..++|+..++++.. +.|...+......            .....++.++|++..++.....+.+..+|+..
T Consensus       138 ~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          138 GVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            36788899999988877666 5544444332211            22367999999998888776688999988763

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=92.32  E-value=1.1  Score=27.06  Aligned_cols=64  Identities=19%  Similarity=0.245  Sum_probs=42.7

Q ss_pred             EEEccCCCEEEEeCC-CCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEec-CC-----CcEEEEeCCCCee
Q psy16880         19 ISFCSKQHTLISGGD-DGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGG-DD-----GSICMWNLNSKLC   82 (84)
Q Consensus        19 ~~~~~~~~~l~~~~~-~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~-~~-----~~i~~~~~~~~~~   82 (84)
                      .++..++..++.|+. ...+.+||..+..-        ...-......+++++++.|+ .+     ..+.+||+.+...
T Consensus       248 ~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W  326 (656)
T 1k3i_A          248 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  326 (656)
T ss_dssp             EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             ccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence            456678899998884 45788898764322        11223455567888888887 33     4688999877653

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=92.31  E-value=0.46  Score=29.58  Aligned_cols=31  Identities=23%  Similarity=0.313  Sum_probs=24.9

Q ss_pred             EEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         51 VRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        51 v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      |.++.+  +...+++.+.|+++++|++++++++
T Consensus       224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv  254 (729)
T 3f7f_A          224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLI  254 (729)
T ss_dssp             EEEEEE--TTTEEEEEETTCEEEEEETTTTEEE
T ss_pred             EEEecc--CCcEEEEEEcCCeEEEEEcCCCceE
Confidence            555444  4668899999999999999998865

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=91.96  E-value=0.61  Score=28.20  Aligned_cols=50  Identities=16%  Similarity=0.035  Sum_probs=31.3

Q ss_pred             CCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         34 DGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        34 ~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      .+.+..||+.+++.      ......-.....+..++.++.|+.++.+|.++++.+
T Consensus       452 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~l  507 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL  507 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEE
Confidence            45777788877655      111111111223456677888999999999988864

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=91.77  E-value=0.84  Score=24.47  Aligned_cols=62  Identities=5%  Similarity=-0.090  Sum_probs=41.0

Q ss_pred             cCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCE--------EEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880         14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAV--------RSISFCSKQRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v--------~~~~~~~~~~~~~~~~~~~~i~~~~~~~   79 (84)
                      ..+..++|+|++.+.+.  .++.+.-.+..+...      ...|        ..+.|.|++.+.++  .|+.|.-++..+
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            45679999998887666  566655445432111      2233        67888999986666  568888777643

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=90.87  E-value=1.1  Score=24.24  Aligned_cols=65  Identities=6%  Similarity=0.023  Sum_probs=43.3

Q ss_pred             CEEEEEEcc-CCCEEEEeCC-----------------CCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEe-cCC
Q psy16880         15 AVRSISFCS-KQHTLISGGD-----------------DGSICMWNLNSKLC------DSAVRSISFCSKQRTLISG-GDD   69 (84)
Q Consensus        15 ~v~~~~~~~-~~~~l~~~~~-----------------~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~-~~~   69 (84)
                      ....+++.+ ++..+++-..                 .+.+..+|......      -.....++++|++..+..+ ...
T Consensus       127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~  206 (322)
T 2fp8_A          127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLS  206 (322)
T ss_dssp             CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGG
T ss_pred             ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCC
Confidence            356788999 8887776432                 25677777654332      2345678999998755444 556


Q ss_pred             CcEEEEeCCC
Q psy16880         70 GSICMWNLNS   79 (84)
Q Consensus        70 ~~i~~~~~~~   79 (84)
                      +.|.++++..
T Consensus       207 ~~I~~~~~~~  216 (322)
T 2fp8_A          207 HQIVKYWLEG  216 (322)
T ss_dssp             TEEEEEESSS
T ss_pred             CeEEEEECCC
Confidence            7898888764

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=90.72  E-value=2.2  Score=27.37  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=28.6

Q ss_pred             cCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC
Q psy16880         14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC   47 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~   47 (84)
                      ..+.++...++..++++-+.|+.+++|++.++..
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~  269 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQC  269 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCe
Confidence            3567788888888999999999999999887654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=90.34  E-value=1.1  Score=23.46  Aligned_cols=64  Identities=13%  Similarity=0.058  Sum_probs=44.1

Q ss_pred             EEEEEEccCC-CEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEE-EEecCCCcEEEEeCCC
Q psy16880         16 VRSISFCSKQ-HTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTL-ISGGDDGSICMWNLNS   79 (84)
Q Consensus        16 v~~~~~~~~~-~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~-~~~~~~~~i~~~~~~~   79 (84)
                      ...+++++++ ..+++-...+.+..++......       -....++++.+.+..+ ++-...+.|.++++..
T Consensus        38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g  110 (267)
T 1npe_A           38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC
Confidence            4688899855 4555666677899998875433       2467899999865444 4444567888887753

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=89.60  E-value=2.3  Score=25.95  Aligned_cols=66  Identities=12%  Similarity=0.153  Sum_probs=42.9

Q ss_pred             EEEEccCCCEEEEeCCCC-------------------cEEEEeCCCCCC------C----------CCEEEEEEccCCC-
Q psy16880         18 SISFCSKQHTLISGGDDG-------------------SICMWNLNSKLC------D----------SAVRSISFCSKQR-   61 (84)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~-------------------~~~~~d~~~~~~------~----------~~v~~~~~~~~~~-   61 (84)
                      .+++.+....+..+..++                   .+..+|..++..      .          .......+..+++ 
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~  313 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP  313 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence            457777777777776655                   377788877655      0          1222222222443 


Q ss_pred             --EEEEecCCCcEEEEeCCCCeec
Q psy16880         62 --TLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        62 --~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                        .++.++.++.+.++|..+++.+
T Consensus       314 ~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          314 RKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEE
T ss_pred             EEEEEEECCCCEEEEEECCCCCEe
Confidence              5778888999999999988764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=88.79  E-value=1.8  Score=23.47  Aligned_cols=65  Identities=14%  Similarity=0.075  Sum_probs=43.0

Q ss_pred             CEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------------------------CCCEEEEEEcc-CCCEEEEec
Q psy16880         15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------------------------DSAVRSISFCS-KQRTLISGG   67 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------------------------~~~v~~~~~~~-~~~~~~~~~   67 (84)
                      ....++|.+++..+.++..++.+..||......                          ...+.++++.+ ++. +..+.
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d   98 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVD   98 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEE
Confidence            345788899888677777888888888764321                          12477888887 565 44443


Q ss_pred             CCCcEEEEeCCCC
Q psy16880         68 DDGSICMWNLNSK   80 (84)
Q Consensus        68 ~~~~i~~~~~~~~   80 (84)
                      ..+.+..++..++
T Consensus        99 ~~~~i~~~d~~~g  111 (322)
T 2fp8_A           99 CYYHLSVVGSEGG  111 (322)
T ss_dssp             TTTEEEEECTTCE
T ss_pred             CCCCEEEEeCCCC
Confidence            3444777776644

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=88.44  E-value=2.4  Score=24.49  Aligned_cols=62  Identities=8%  Similarity=0.014  Sum_probs=41.2

Q ss_pred             EEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEE-EEecCCCcEEEEeCC
Q psy16880         17 RSISFCS-KQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTL-ISGGDDGSICMWNLN   78 (84)
Q Consensus        17 ~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~-~~~~~~~~i~~~~~~   78 (84)
                      ..++++| ++.++++-..++.+..+|......         ......++++|++..+ ++-...+.|..+++.
T Consensus       231 ~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          231 KTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             CCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             CEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            4567788 677776766777888888763321         1223469999999844 444556788887754

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=88.36  E-value=1.8  Score=23.12  Aligned_cols=56  Identities=13%  Similarity=0.144  Sum_probs=26.6

Q ss_pred             EEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880         16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus        16 v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      +.++...+++. +..+..++.+..+|.. +..       ...+..+...+++...+ ++  +.+..+|
T Consensus       139 ~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d  201 (330)
T 3hxj_A          139 YATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN  201 (330)
T ss_dssp             CSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC
T ss_pred             eeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC
Confidence            33444444454 3345555666666665 322       22344444444554333 22  5566666

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=87.97  E-value=2  Score=23.14  Aligned_cols=76  Identities=14%  Similarity=0.256  Sum_probs=47.1

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------------CCCEEEEEEccCCCEEEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------------DSAVRSISFCSKQRTLIS   65 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------------~~~v~~~~~~~~~~~~~~   65 (84)
                      |+.++.+.-........+++.+++.++++.-.+..+.++++.....                +...-+++|.|.+..+.+
T Consensus        58 g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v  137 (255)
T 3qqz_A           58 GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF  137 (255)
T ss_dssp             CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE
T ss_pred             CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEE
Confidence            4555555321135667888888887766655566777776643321                334589999998876766


Q ss_pred             ecCCCcEEEEeC
Q psy16880         66 GGDDGSICMWNL   77 (84)
Q Consensus        66 ~~~~~~i~~~~~   77 (84)
                      +.......+|.+
T Consensus       138 a~E~~p~~i~~~  149 (255)
T 3qqz_A          138 FKEKNPIEVYKV  149 (255)
T ss_dssp             EEESSSEEEEEE
T ss_pred             EECcCCceEEEE
Confidence            665555555544

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=87.57  E-value=2.1  Score=22.89  Aligned_cols=57  Identities=11%  Similarity=0.043  Sum_probs=25.9

Q ss_pred             CEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880         15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      .+.++...+++..++..   +.+..+| .+...       ...+.++...+++. +..++.++.+..++
T Consensus       178 ~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~  241 (330)
T 3hxj_A          178 ITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAIN  241 (330)
T ss_dssp             CCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEEC
T ss_pred             ceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEEC
Confidence            34444444555544433   4555566 32222       23345555555544 33333444455554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=86.00  E-value=2.5  Score=22.17  Aligned_cols=68  Identities=6%  Similarity=-0.106  Sum_probs=42.5

Q ss_pred             cCEEEEEEccCCCE-EEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880         14 SAVRSISFCSKQHT-LISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        14 ~~v~~~~~~~~~~~-l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                      .....+++++++.. +++-...+.+..+|......      .....+++.. .+...++....+.|..++..+++.
T Consensus       167 ~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~  241 (267)
T 1npe_A          167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKE  241 (267)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCc
Confidence            34567889987654 45556667888888864322      2344566553 333344444567898998887664

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=82.39  E-value=4.5  Score=22.30  Aligned_cols=57  Identities=7%  Similarity=0.069  Sum_probs=36.7

Q ss_pred             CCEEEEeCCCCcEEEEeCCCCCC------C---------C-CEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880         25 QHTLISGGDDGSICMWNLNSKLC------D---------S-AVRSISFCSKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        25 ~~~l~~~~~~~~~~~~d~~~~~~------~---------~-~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                      +..+..+..++.+..+|..++..      .         . .+.... ...+..+..++.++.+..+|..+++.
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~  125 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTV  125 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCE
Confidence            45666777788888899876655      1         1 121111 12344577777788999999887764

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=80.44  E-value=6  Score=22.43  Aligned_cols=67  Identities=16%  Similarity=0.125  Sum_probs=45.2

Q ss_pred             EEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC-----C---------CCEEEEEE---ccCCCEEEEec----------
Q psy16880         16 VRSISFCSK-QHTLISGGDDGSICMWNLNSKLC-----D---------SAVRSISF---CSKQRTLISGG----------   67 (84)
Q Consensus        16 v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~-----~---------~~v~~~~~---~~~~~~~~~~~----------   67 (84)
                      -.+.+|++. +.++++....+.|..||......     .         ..+.++.+   .|+++++++..          
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            457789874 45555556789999998864322     1         14689999   58877666533          


Q ss_pred             ---CCCcEEEEeCC---CCee
Q psy16880         68 ---DDGSICMWNLN---SKLC   82 (84)
Q Consensus        68 ---~~~~i~~~~~~---~~~~   82 (84)
                         .++.+..+|+.   +++.
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~  115 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKP  115 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCC
T ss_pred             ccCCCCEEEEEcCCcCCCCCE
Confidence               25678899988   5553

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=80.32  E-value=6.1  Score=22.44  Aligned_cols=72  Identities=10%  Similarity=0.001  Sum_probs=44.6

Q ss_pred             EeccCCCcCEEEEEEccCCCEEEEeCC---------------CCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEE
Q psy16880          7 TFVHSNNSAVRSISFCSKQHTLISGGD---------------DGSICMWNLNSKLC------DSAVRSISFCSKQRTLIS   65 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~   65 (84)
                      .+++........+.+.++++++++...               ...-.+|.+.....      -....+++|+|+++.+..
T Consensus       158 ~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~~l~~pNGia~spDg~~lYv  237 (355)
T 3sre_A          158 TIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYI  237 (355)
T ss_dssp             EECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEEEESSEEEEEECTTSSEEEE
T ss_pred             ccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeecCCcccCcceECCCCCEEEE
Confidence            344331345688888888887776541               11223443333322      245788999999977665


Q ss_pred             e-cCCCcEEEEeCC
Q psy16880         66 G-GDDGSICMWNLN   78 (84)
Q Consensus        66 ~-~~~~~i~~~~~~   78 (84)
                      + +..+.|..|++.
T Consensus       238 adt~~~~I~~~~~~  251 (355)
T 3sre_A          238 AELLAHKIHVYEKH  251 (355)
T ss_dssp             EEGGGTEEEEEEEC
T ss_pred             EeCCCCeEEEEEEC
Confidence            5 456789988875

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=80.04  E-value=6.6  Score=22.64  Aligned_cols=69  Identities=12%  Similarity=0.201  Sum_probs=40.8

Q ss_pred             CcCEEEEEEccCCCEEEEeCC-CC----cEEEEeCCCCCC-------CCCEEEEEEcc-CCCEEEEecCCCcEEEEeCCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGD-DG----SICMWNLNSKLC-------DSAVRSISFCS-KQRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~-~~----~~~~~d~~~~~~-------~~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~~   79 (84)
                      ......+++++++..+..+.. .+    .+...+......       -.....+++.| ++.++++-...+.|..++...
T Consensus       178 ~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~  257 (430)
T 3tc9_A          178 LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTT  257 (430)
T ss_dssp             CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTT
T ss_pred             CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence            345678999999985544433 22    222233221111       23456788888 677666665677888888765


Q ss_pred             Ce
Q psy16880         80 KL   81 (84)
Q Consensus        80 ~~   81 (84)
                      +.
T Consensus       258 ~~  259 (430)
T 3tc9_A          258 QE  259 (430)
T ss_dssp             TE
T ss_pred             Cc
Confidence            54

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	84
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	7e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.001
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.003
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.6 bits (114), Expect = 5e-09
 Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 7/78 (8%)

Query: 6   HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCS 58
                +    + S+SF      L++G DD +  +W+             D+ V  +    
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322

Query: 59  KQRTLISGGDDGSICMWN 76
               + +G  D  + +WN
Sbjct: 323 DGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.4 bits (98), Expect = 1e-06
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 10/91 (10%)

Query: 1   DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSI---------CMWNLNSKLCDSAV 51
           +G    TF   + S + +I F    +   +G DD +           +   +       +
Sbjct: 215 EGMCRQTF-TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273

Query: 52  RSISFCSKQRTLISGGDDGSICMWNLNSKLC 82
            S+SF    R L++G DD +  +W+      
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 2e-07
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 8/82 (9%)

Query: 1   DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRS 53
            G  + T V  +N  VR + F S    ++S  DD ++ +W+  +K C       +  V S
Sbjct: 236 TGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTS 294

Query: 54  ISFCSKQRTLISGGDDGSICMW 75
           + F      +++G  D ++ +W
Sbjct: 295 LDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (86), Expect = 4e-05
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 6   HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCS 58
                S  +   +         L+SG  D +I MW++++ +C       D+ VR + F S
Sbjct: 198 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS 257

Query: 59  KQRTLISGGDDGSICMWNLNSKLC 82
             + ++S  DD ++ +W+  +K C
Sbjct: 258 GGKFILSCADDKTLRVWDYKNKRC 281

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 3e-07
 Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 6/78 (7%)

Query: 6   HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSK 59
              +H + S V S+ F       +S G D  +  W              S+V S      
Sbjct: 258 KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVD 317

Query: 60  QRTLISGGDDGSICMWNL 77
            + +++G  D    ++ +
Sbjct: 318 DKYIVTGSGDKKATVYEV 335

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 6e-06
 Identities = 11/81 (13%), Positives = 23/81 (28%), Gaps = 13/81 (16%)

Query: 10  HSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSK-------------LCDSAVRSISF 56
             +   V S++       ++SG  D  +  W+  S              +  +     S 
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 364

Query: 57  CSKQRTLISGGDDGSICMWNL 77
             +     +G  D    +W  
Sbjct: 365 GPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 7e-05
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 19/88 (21%)

Query: 14  SAVRSISFCSKQHTLISGGDDGSICMWNLNSK-------------------LCDSAVRSI 54
            +V S+ F     +++SG  D S+ +WNL +                         V S+
Sbjct: 255 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV 314

Query: 55  SFCSKQRTLISGGDDGSICMWNLNSKLC 82
           +       ++SG  D  +  W+  S   
Sbjct: 315 ATTQNDEYILSGSKDRGVLFWDKKSGNP 342

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.8 bits (91), Expect = 7e-06
 Identities = 9/82 (10%), Positives = 28/82 (34%), Gaps = 3/82 (3%)

Query: 6   HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLCD---SAVRSISFCSKQRT 62
              + S+                    + G +  +++ ++      + +  +   + ++T
Sbjct: 269 IIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKT 328

Query: 63  LISGGDDGSICMWNLNSKLCDR 84
           ++   DDG I  + L     +R
Sbjct: 329 VMVRKDDGKIYTFPLEKPEDER 350

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.3 bits (87), Expect = 2e-05
 Identities = 4/71 (5%), Positives = 23/71 (32%), Gaps = 9/71 (12%)

Query: 15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLIS 65
           +   ++   +  +    ++  + ++  +             +  V  + +      +++
Sbjct: 9  PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 66 GGDDGSICMWN 76
           G D +  +W 
Sbjct: 69 CGTDRNAYVWT 79

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 33.7 bits (75), Expect = 0.001
 Identities = 11/80 (13%), Positives = 29/80 (36%), Gaps = 8/80 (10%)

Query: 6   HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFC 57
                +++ +V  +++      + S   D +I +WN+ +               + +   
Sbjct: 231 SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 290

Query: 58  SKQRTLISGGDDGSICMWNL 77
             ++ L+S   +G I   N 
Sbjct: 291 WTKQALVSISANGFINFVNP 310

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 32.6 bits (72), Expect = 0.003
 Identities = 10/81 (12%), Positives = 29/81 (35%), Gaps = 9/81 (11%)

Query: 6   HTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFC 57
                 +++ + +I+       ++  G +    ++NL S              + S++F 
Sbjct: 274 SRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNF- 332

Query: 58  SKQRTLISGGDDGSICMWNLN 78
             +  + +   DG   +  L+
Sbjct: 333 KGKTLVAAVEKDGQSFLEILD 353

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 32.5 bits (72), Expect = 0.003
 Identities = 8/72 (11%), Positives = 19/72 (26%), Gaps = 10/72 (13%)

Query: 15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLI 64
           +  I     +  L+    DGS+ ++  + +               +   +F       I
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72

Query: 65 SGGDDGSICMWN 76
            G      +  
Sbjct: 73 YVGTVQGEILKV 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	84
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.77
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.77
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.76
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.75
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.75
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.74
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.72
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.72
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.7
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.68
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.68
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.67
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.66
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.65
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.64
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.62
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.62
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.59
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.55
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.54
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.53
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.53
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.53
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.48
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.47
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.45
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.43
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.42
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.42
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.4
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.3
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.2
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.16
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.14
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.12
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.11
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.09
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.02
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.93
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.93
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.91
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.71
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.71
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.66
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.61
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.56
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.52
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.48
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.29
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.04
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.95
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.64
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.31
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.29
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	96.97
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	96.78
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.64
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.57
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	96.56
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.53
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	96.44
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	96.37
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.18
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.72
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	95.69
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	94.83
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	94.27
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	94.08
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	93.56
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	91.49
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	91.02
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	88.34
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	86.68
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	85.2
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	84.58
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	82.02
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	81.91
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	80.71
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	80.24
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	80.12

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=5.2e-18  Score=88.67  Aligned_cols=75  Identities=25%  Similarity=0.527  Sum_probs=68.6

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      +++++..+.+| ...|.+++++|++.+|++++.|+.+.+||+.+...       ...|.+++|+|+++.+++++.|+.|+
T Consensus       236 ~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~  314 (317)
T d1vyhc1         236 TGMCLMTLVGH-DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK  314 (317)
T ss_dssp             TTEEEEEEECC-SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEE
T ss_pred             CCcEEEEEeCC-CCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEE
Confidence            35678888888 99999999999999999999999999999987765       67899999999999999999999999


Q ss_pred             EEe
Q psy16880         74 MWN   76 (84)
Q Consensus        74 ~~~   76 (84)
                      +||
T Consensus       315 iWd  317 (317)
T d1vyhc1         315 VWE  317 (317)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=2.2e-18  Score=93.97  Aligned_cols=74  Identities=26%  Similarity=0.394  Sum_probs=64.5

Q ss_pred             ccCCCcCEEEEEEccCCCEEEEeCCCC---cEEEEeCCCCCC--------------------CCCEEEEEEccCCCEEEE
Q psy16880          9 VHSNNSAVRSISFCSKQHTLISGGDDG---SICMWNLNSKLC--------------------DSAVRSISFCSKQRTLIS   65 (84)
Q Consensus         9 ~~~~~~~v~~~~~~~~~~~l~~~~~~~---~~~~~d~~~~~~--------------------~~~v~~~~~~~~~~~~~~   65 (84)
                      .+| ...|.+++|+|++++|++|+.|+   .+++||+..+..                    ...|.+++|+|+++++++
T Consensus       228 ~~h-~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S  306 (393)
T d1sq9a_         228 INN-SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS  306 (393)
T ss_dssp             -CC-CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE
T ss_pred             ccc-cceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEE
Confidence            456 78999999999999999998886   488999976533                    456999999999999999


Q ss_pred             ecCCCcEEEEeCCCCeec
Q psy16880         66 GGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        66 ~~~~~~i~~~~~~~~~~~   83 (84)
                      ++.|++|++||+.+++++
T Consensus       307 ~s~D~~v~vWd~~~g~~~  324 (393)
T d1sq9a_         307 AGWDGKLRFWDVKTKERI  324 (393)
T ss_dssp             EETTSEEEEEETTTTEEE
T ss_pred             ECCCCEEEEEECCCCCEE
Confidence            999999999999998765

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.76  E-value=1.6e-17  Score=88.63  Aligned_cols=81  Identities=20%  Similarity=0.322  Sum_probs=71.7

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------------CCCEEEEEEccCCCEEEEec
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------------DSAVRSISFCSKQRTLISGG   67 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------------~~~v~~~~~~~~~~~~~~~~   67 (84)
                      +++...+..| ...|.++.|+|+++.+++++.++.+.+||......              ...|.+++|+|+++.+++++
T Consensus       179 ~~~~~~~~~~-~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs  257 (311)
T d1nr0a1         179 FKFKSTFGEH-TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS  257 (311)
T ss_dssp             BEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE
T ss_pred             cccccccccc-cccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEe
Confidence            4566777788 89999999999999999999999999999876543              35799999999999999999


Q ss_pred             CCCcEEEEeCCCCeec
Q psy16880         68 DDGSICMWNLNSKLCD   83 (84)
Q Consensus        68 ~~~~i~~~~~~~~~~~   83 (84)
                      .|+.|++||+++++++
T Consensus       258 ~Dg~v~iwd~~t~~~~  273 (311)
T d1nr0a1         258 ADKTIKIWNVATLKVE  273 (311)
T ss_dssp             TTSEEEEEETTTTEEE
T ss_pred             CCCeEEEEECCCCcEE
Confidence            9999999999988765

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=2.6e-17  Score=87.05  Aligned_cols=77  Identities=17%  Similarity=0.335  Sum_probs=69.8

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      +..+++++| .+.|.+++|+|++.+|++|+.|+.+++||+.+...       ...|.+++|+|++..+++++.|+.+.+|
T Consensus        46 ~~~~tL~GH-~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~  124 (340)
T d1tbga_          46 RTRRTLRGH-LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CEEEEECCC-SSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             eeeEEECCC-CCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecc
Confidence            467789999 99999999999999999999999999999987655       6689999999999999999999999999


Q ss_pred             eCCCC
Q psy16880         76 NLNSK   80 (84)
Q Consensus        76 ~~~~~   80 (84)
                      +....
T Consensus       125 ~~~~~  129 (340)
T d1tbga_         125 NLKTR  129 (340)
T ss_dssp             ESSSS
T ss_pred             ccccc
Confidence            87543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=3.7e-17  Score=86.46  Aligned_cols=81  Identities=23%  Similarity=0.391  Sum_probs=72.6

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSI   72 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i   72 (84)
                      ++++..+.+| .+.|.+++|+|++..+++++.++.+.+||+.....         ...+..++|+|++..+++++.|+.|
T Consensus       216 ~~~~~~~~~h-~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i  294 (340)
T d1tbga_         216 GMCRQTFTGH-ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC  294 (340)
T ss_dssp             TEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCE
T ss_pred             CcEEEEEeCC-CCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEE
Confidence            5677888888 99999999999999999999999999999986644         4569999999999999999999999


Q ss_pred             EEEeCCCCeec
Q psy16880         73 CMWNLNSKLCD   83 (84)
Q Consensus        73 ~~~~~~~~~~~   83 (84)
                      ++||+.+++++
T Consensus       295 ~iwd~~~~~~~  305 (340)
T d1tbga_         295 NVWDALKADRA  305 (340)
T ss_dssp             EEEETTTCCEE
T ss_pred             EEEECCCCcEE
Confidence            99999887754

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.74  E-value=4.5e-17  Score=85.56  Aligned_cols=77  Identities=22%  Similarity=0.311  Sum_probs=67.3

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      |+..+.+++| .+.|.+++|+|++++|++|+.|+.+++||+.++..        ...|.+++|+|++. +++++.|+.++
T Consensus         2 g~~~~~~~GH-~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~   79 (299)
T d1nr0a2           2 GSIDQVRYGH-NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLK   79 (299)
T ss_dssp             TEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEE
T ss_pred             CccceEcCCC-CCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEE
Confidence            7889999999 99999999999999999999999999999987654        46799999999987 45566799999


Q ss_pred             EEeCCCC
Q psy16880         74 MWNLNSK   80 (84)
Q Consensus        74 ~~~~~~~   80 (84)
                      +|+....
T Consensus        80 ~~~~~~~   86 (299)
T d1nr0a2          80 VVPAGGS   86 (299)
T ss_dssp             EECSSSS
T ss_pred             EeccCCc
Confidence            9987543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=3.9e-17  Score=85.91  Aligned_cols=78  Identities=14%  Similarity=0.203  Sum_probs=66.6

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCC-CEEEEecCCCc
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQ-RTLISGGDDGS   71 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~-~~~~~~~~~~~   71 (84)
                      +.++..+.| .+.|.+|+|+|++++|++++.|+.+++||+.....          ...|.+++|+|++ ..+++++.|+.
T Consensus         2 ~~v~~~~~h-~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~   80 (342)
T d1yfqa_           2 QIVQIEQAP-KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             EEEECSSCC-SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred             CeEEcCCCC-CCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccc
Confidence            456666777 99999999999999999999999999999865433          6789999999864 57889999999


Q ss_pred             EEEEeCCCCe
Q psy16880         72 ICMWNLNSKL   81 (84)
Q Consensus        72 i~~~~~~~~~   81 (84)
                      +.+|+.....
T Consensus        81 v~~w~~~~~~   90 (342)
T d1yfqa_          81 ILKVDLIGSP   90 (342)
T ss_dssp             EEEECSSSSS
T ss_pred             eeeeeccccc
Confidence            9999987554

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.2e-16  Score=85.46  Aligned_cols=74  Identities=23%  Similarity=0.540  Sum_probs=62.9

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------------CCCEEEEEEccCCCEEEEecCCCc
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------------DSAVRSISFCSKQRTLISGGDDGS   71 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~   71 (84)
                      .++.+ .| .+.|.+++|+|++++|++|+ ++.+++||+.....            ...|.+++|+|+++.+++++.|+.
T Consensus        44 ~~~~~-~H-~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~  120 (337)
T d1gxra_          44 QINTL-NH-GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST  120 (337)
T ss_dssp             EEEEE-CC-SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred             EEEEC-CC-CCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccc
Confidence            34454 46 89999999999999999987 78999999975433            456999999999999999999999


Q ss_pred             EEEEeCCCC
Q psy16880         72 ICMWNLNSK   80 (84)
Q Consensus        72 i~~~~~~~~   80 (84)
                      |++||+...
T Consensus       121 i~iwd~~~~  129 (337)
T d1gxra_         121 LSIWDLAAP  129 (337)
T ss_dssp             EEEEECCCC
T ss_pred             ccccccccc
Confidence            999998644

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=2.2e-16  Score=85.08  Aligned_cols=72  Identities=19%  Similarity=0.399  Sum_probs=63.0

Q ss_pred             cCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------------------------CCCEEEEEEccCCCEEE
Q psy16880         10 HSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------------------------DSAVRSISFCSKQRTLI   64 (84)
Q Consensus        10 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------------------------~~~v~~~~~~~~~~~~~   64 (84)
                      +| .+.|.+++|+|+|++|++|+ |+.+++||+.+...                         ...|.+++|+|+++.++
T Consensus        60 ~H-~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          60 DH-TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             EC-SSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CC-CCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            47 89999999999999999987 88999999976543                         34589999999999999


Q ss_pred             EecCCCcEEEEeCCCCeec
Q psy16880         65 SGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        65 ~~~~~~~i~~~~~~~~~~~   83 (84)
                      +++.|+.|++|+...++.+
T Consensus       138 s~~~dg~v~i~~~~~~~~~  156 (388)
T d1erja_         138 TGAEDRLIRIWDIENRKIV  156 (388)
T ss_dssp             EEETTSCEEEEETTTTEEE
T ss_pred             ecccccccccccccccccc
Confidence            9999999999999877653

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.68  E-value=1e-15  Score=81.52  Aligned_cols=80  Identities=11%  Similarity=0.195  Sum_probs=68.2

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecC--CC
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGD--DG   70 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~--~~   70 (84)
                      +...+.+.+| .+.|.+++|+|++++|++|+.|+.+++||+.....         ...|.+++|+|+++.+++++.  +.
T Consensus        48 ~~~~~~~~~H-~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~  126 (311)
T d1nr0a1          48 LTDTEIYTEH-SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER  126 (311)
T ss_dssp             SSCCEEECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSC
T ss_pred             CceeEEEcCC-CCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccc
Confidence            3456677888 99999999999999999999999999999976643         568999999999999988875  45


Q ss_pred             cEEEEeCCCCee
Q psy16880         71 SICMWNLNSKLC   82 (84)
Q Consensus        71 ~i~~~~~~~~~~   82 (84)
                      .+++|++.+++.
T Consensus       127 ~~~v~~~~~~~~  138 (311)
T d1nr0a1         127 FGHVFLFDTGTS  138 (311)
T ss_dssp             SEEEEETTTCCB
T ss_pred             cccccccccccc
Confidence            699999887654

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=9.6e-16  Score=81.95  Aligned_cols=70  Identities=19%  Similarity=0.314  Sum_probs=63.4

Q ss_pred             EeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880          7 TFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNL   77 (84)
Q Consensus         7 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (84)
                      ....| .+.|.+++|+|+++.|++++.|+.+++||+.....      ...|.+++|+|+++++++++.|+.|++||+
T Consensus       260 ~~~~~-~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         260 QLHLH-ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             ccccc-ccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            34556 88999999999999999999999999999987765      678999999999999999999999999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=9.3e-16  Score=79.99  Aligned_cols=77  Identities=22%  Similarity=0.442  Sum_probs=59.6

Q ss_pred             EEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------------------------------------
Q psy16880          5 IHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------------------------------------   47 (84)
Q Consensus         5 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------------------------------------   47 (84)
                      .+.+++| .+.|.+++|+|++++|++|+.|+.+++||+.+...                                     
T Consensus        10 ~~~L~GH-~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (317)
T d1vyhc1          10 KYALSGH-RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF   88 (317)
T ss_dssp             SCEEECC-SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             cEEEcCC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccc
Confidence            3567899 99999999999999999999999999999876543                                     


Q ss_pred             ------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCee
Q psy16880         48 ------------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLC   82 (84)
Q Consensus        48 ------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (84)
                                  ...+..+.++|++..+++++.|+.+++|++++++.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  135 (317)
T d1vyhc1          89 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC  135 (317)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE
T ss_pred             cccccccccccccccceeeeccCCCceEEeeccCcceeEeeccccee
Confidence                        33455566666666667777777777777765543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=3.6e-16  Score=84.67  Aligned_cols=69  Identities=7%  Similarity=0.305  Sum_probs=61.7

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (84)
                      .++|.+++|+|+++++++++.++.+.+||......         ...|.+++|+|+++++++++.|+.|++||+.++.
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~   84 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT   84 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc
Confidence            57899999999999999999999999999975532         5689999999999999999999999999987654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.65  E-value=9e-16  Score=83.07  Aligned_cols=75  Identities=15%  Similarity=0.434  Sum_probs=66.2

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcEEE
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSICM   74 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i~~   74 (84)
                      .+..+++| .+.|.+++|+|++++|++++.|+.+++||+.....         ...|.+++|+|+++.+++++.++.+++
T Consensus        43 ~~~~l~gH-~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i  121 (371)
T d1k8kc_          43 QVHELKEH-NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI  121 (371)
T ss_dssp             EEEEEECC-SSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEE
T ss_pred             EEEEecCC-CCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCccee
Confidence            45677888 99999999999999999999999999999975532         457999999999999999999999999


Q ss_pred             EeCCC
Q psy16880         75 WNLNS   79 (84)
Q Consensus        75 ~~~~~   79 (84)
                      |++..
T Consensus       122 ~~~~~  126 (371)
T d1k8kc_         122 CYFEQ  126 (371)
T ss_dssp             EEEET
T ss_pred             eeeec
Confidence            97653

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=2.2e-15  Score=81.19  Aligned_cols=73  Identities=23%  Similarity=0.391  Sum_probs=62.4

Q ss_pred             cCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------------------CCCEEEEEEccCCCEEEEecCCC
Q psy16880         10 HSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------------------DSAVRSISFCSKQRTLISGGDDG   70 (84)
Q Consensus        10 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------------------~~~v~~~~~~~~~~~~~~~~~~~   70 (84)
                      +| .+.|.+++|+|++..+++++.++.+.+||+.....                   ...|.+++|+|+++++++++.|+
T Consensus       252 ~h-~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg  330 (388)
T d1erja_         252 GH-KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR  330 (388)
T ss_dssp             CC-SSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS
T ss_pred             CC-CCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCC
Confidence            45 78899999999999999999999999999975433                   45789999999999999999999


Q ss_pred             cEEEEeCCCCeec
Q psy16880         71 SICMWNLNSKLCD   83 (84)
Q Consensus        71 ~i~~~~~~~~~~~   83 (84)
                      .|++||+++++++
T Consensus       331 ~i~vwd~~~~~~~  343 (388)
T d1erja_         331 GVLFWDKKSGNPL  343 (388)
T ss_dssp             EEEEEETTTCCEE
T ss_pred             EEEEEECCCCcEE
Confidence            9999999988764

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.62  E-value=9.5e-15  Score=76.59  Aligned_cols=71  Identities=17%  Similarity=0.373  Sum_probs=62.7

Q ss_pred             cCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880         10 HSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus        10 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~   79 (84)
                      .| ...|.+++|+|++..+++++.++.+.+||+.....          ...|.+++|+|++.++++++.|+.|++||+++
T Consensus       177 ~~-~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~  255 (299)
T d1nr0a2         177 VH-PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK  255 (299)
T ss_dssp             EC-SSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred             cc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCC
Confidence            45 78899999999999999999999999999865433          46799999999999999999999999999876


Q ss_pred             Ce
Q psy16880         80 KL   81 (84)
Q Consensus        80 ~~   81 (84)
                      ..
T Consensus       256 ~~  257 (299)
T d1nr0a2         256 PS  257 (299)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=1.1e-14  Score=77.69  Aligned_cols=82  Identities=18%  Similarity=0.250  Sum_probs=69.4

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCC-EEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccC-CCEEEEecC
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQH-TLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSK-QRTLISGGD   68 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~-~~~~~~~~~   68 (84)
                      +|+++..+++| ...|.+++|+|++. .+++++.++.+.+||......          ...|.+++|+|+ +..+++++.
T Consensus       148 ~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~  226 (325)
T d1pgua1         148 SGNSLGEVSGH-SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS  226 (325)
T ss_dssp             TCCEEEECCSC-SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred             ccccceeeeec-ccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccc
Confidence            36778888888 99999999999876 577899999999999875543          456999999996 678899999


Q ss_pred             CCcEEEEeCCCCeec
Q psy16880         69 DGSICMWNLNSKLCD   83 (84)
Q Consensus        69 ~~~i~~~~~~~~~~~   83 (84)
                      |+.|++||.++++.+
T Consensus       227 d~~i~iwd~~~~~~~  241 (325)
T d1pgua1         227 DRKISCFDGKSGEFL  241 (325)
T ss_dssp             TCCEEEEETTTCCEE
T ss_pred             ccceeeeeecccccc
Confidence            999999999887754

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=1.9e-14  Score=76.06  Aligned_cols=74  Identities=22%  Similarity=0.485  Sum_probs=61.7

Q ss_pred             EEEeccCCCcC-EEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880          5 IHTFVHSNNSA-VRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus         5 ~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      ..++++| .+. +.|+++  ++++|++|+.|+.+++||+.+...       ...|.+++|+|+ ..+++++.|+.+++|+
T Consensus         5 ~~tL~GH-~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2           5 RTTLRGH-MTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEEEECC-SSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred             cEEECCc-CCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccc
Confidence            4578899 665 466655  688999999999999999987655       678999999986 4789999999999999


Q ss_pred             CCCCee
Q psy16880         77 LNSKLC   82 (84)
Q Consensus        77 ~~~~~~   82 (84)
                      ....++
T Consensus        81 ~~~~~~   86 (355)
T d1nexb2          81 IKKGCC   86 (355)
T ss_dssp             TTTTEE
T ss_pred             cccccc
Confidence            987664

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=2.8e-14  Score=77.62  Aligned_cols=69  Identities=16%  Similarity=0.272  Sum_probs=58.9

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------------CCCEEEEEEccCCCEEEEecCCCc---EEEEe
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------------DSAVRSISFCSKQRTLISGGDDGS---ICMWN   76 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------------~~~v~~~~~~~~~~~~~~~~~~~~---i~~~~   76 (84)
                      ...+.+++|+|++ ++++|+.|+.+++||+.+...             ...|.+++|+|+++.+++++.|+.   |++||
T Consensus       184 ~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd  262 (393)
T d1sq9a_         184 SQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYE  262 (393)
T ss_dssp             CCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEE
T ss_pred             CCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecc
Confidence            4557899999987 889999999999999976543             457999999999999999998874   89999


Q ss_pred             CCCCee
Q psy16880         77 LNSKLC   82 (84)
Q Consensus        77 ~~~~~~   82 (84)
                      ++++++
T Consensus       263 ~~~g~~  268 (393)
T d1sq9a_         263 TEFGER  268 (393)
T ss_dssp             TTTCCE
T ss_pred             ccccee
Confidence            987654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=9.3e-14  Score=71.71  Aligned_cols=73  Identities=23%  Similarity=0.590  Sum_probs=59.4

Q ss_pred             EEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880          5 IHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNL   77 (84)
Q Consensus         5 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (84)
                      ++.+..+ ...|.|+++  ++++|++|+.|+.+++||+.+...       ...|.+++|  +++.+++++.|+.+++|++
T Consensus         8 i~~~~~~-~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~   82 (293)
T d1p22a2           8 IHCRSET-SKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV   82 (293)
T ss_dssp             EECCCSS-CCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred             EeccCCC-CCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccc
Confidence            3444555 778888765  799999999999999999987655       567888877  5678999999999999998


Q ss_pred             CCCee
Q psy16880         78 NSKLC   82 (84)
Q Consensus        78 ~~~~~   82 (84)
                      ..+..
T Consensus        83 ~~~~~   87 (293)
T d1p22a2          83 NTGEM   87 (293)
T ss_dssp             SSCCE
T ss_pred             ccccc
Confidence            77653

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=9.2e-14  Score=73.04  Aligned_cols=75  Identities=20%  Similarity=0.377  Sum_probs=62.3

Q ss_pred             ceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          3 SIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         3 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      ++.+.+++| .+.|.+ ++++++++|++|+.|+.+++||+.+...       ...|.+++|+|+  .+++++.|+.+++|
T Consensus         7 ~~~~~l~GH-~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~   82 (342)
T d2ovrb2           7 KSPKVLKGH-DDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVW   82 (342)
T ss_dssp             CCCEEEECS-TTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEE
T ss_pred             CcCEEECCc-CCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccccc
Confidence            456788999 887754 3556789999999999999999987665       568999999875  89999999999999


Q ss_pred             eCCCCe
Q psy16880         76 NLNSKL   81 (84)
Q Consensus        76 ~~~~~~   81 (84)
                      +.....
T Consensus        83 ~~~~~~   88 (342)
T d2ovrb2          83 NAETGE   88 (342)
T ss_dssp             ETTTTE
T ss_pred             cccccc
Confidence            987654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=2e-13  Score=71.16  Aligned_cols=67  Identities=19%  Similarity=0.349  Sum_probs=58.7

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCC----------CEEEEecCCCcEEE
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQ----------RTLISGGDDGSICM   74 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~----------~~~~~~~~~~~i~~   74 (84)
                      .+.+.+++|+|++.+|++++.++.+.+||+.....        ...|.+++|+|.+          .++++++.|+.|++
T Consensus       162 ~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~i  241 (287)
T d1pgua2         162 RAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI  241 (287)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEE
T ss_pred             CCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEE
Confidence            67899999999999999999999999999976643        5679999998754          57899999999999


Q ss_pred             EeCCC
Q psy16880         75 WNLNS   79 (84)
Q Consensus        75 ~~~~~   79 (84)
                      |+++.
T Consensus       242 w~~~~  246 (287)
T d1pgua2         242 YSVKR  246 (287)
T ss_dssp             EESSC
T ss_pred             EECCC
Confidence            99865

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=3.1e-14  Score=75.93  Aligned_cols=70  Identities=21%  Similarity=0.425  Sum_probs=57.1

Q ss_pred             CcCEEEEEEccC-CCEEEEeCCCCcEEEEeCCCCCC-------CCC----EEEEEEccCCCEEEEecCCCcEEEEeCCCC
Q psy16880         13 NSAVRSISFCSK-QHTLISGGDDGSICMWNLNSKLC-------DSA----VRSISFCSKQRTLISGGDDGSICMWNLNSK   80 (84)
Q Consensus        13 ~~~v~~~~~~~~-~~~l~~~~~~~~~~~~d~~~~~~-------~~~----v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   80 (84)
                      ...|.+++|+|+ +.++++++.|+.+.+||+++...       ...    +.++.+ |++..+++++.|+.|++||++++
T Consensus       205 ~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~  283 (325)
T d1pgua1         205 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW-LDSQKFATVGADATIRVWDVTTS  283 (325)
T ss_dssp             TCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEE-SSSSEEEEEETTSEEEEEETTTT
T ss_pred             CCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeec-cCCCEEEEEeCCCeEEEEECCCC
Confidence            677999999996 68899999999999999987654       223    344444 56789999999999999999988


Q ss_pred             eec
Q psy16880         81 LCD   83 (84)
Q Consensus        81 ~~~   83 (84)
                      +++
T Consensus       284 ~~~  286 (325)
T d1pgua1         284 KCV  286 (325)
T ss_dssp             EEE
T ss_pred             CEE
Confidence            765

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=3.7e-13  Score=71.02  Aligned_cols=80  Identities=15%  Similarity=0.430  Sum_probs=64.7

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCc
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGS   71 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~   71 (84)
                      ++++++++++| .+.|.+++|+++ ..|++++.|+.+++|+......         ........+.+++..+++++.|+.
T Consensus        42 ~~~~~~~l~~H-~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  119 (355)
T d1nexb2          42 NKKFLLQLSGH-DGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT  119 (355)
T ss_dssp             TTEEEEEEECC-SSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSE
T ss_pred             CCcEEEEEECC-CCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCc
Confidence            46788999999 999999999985 5899999999999999987654         223455666788888999999999


Q ss_pred             EEEEeCCCCee
Q psy16880         72 ICMWNLNSKLC   82 (84)
Q Consensus        72 i~~~~~~~~~~   82 (84)
                      |++|++++...
T Consensus       120 i~iw~~~~~~~  130 (355)
T d1nexb2         120 LHVWKLPKESS  130 (355)
T ss_dssp             EEEEECCC---
T ss_pred             EEEEEccCCce
Confidence            99999876543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=4.5e-13  Score=69.83  Aligned_cols=68  Identities=22%  Similarity=0.452  Sum_probs=57.0

Q ss_pred             eccCCCcCEEEEEEccC----------CCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCC
Q psy16880          8 FVHSNNSAVRSISFCSK----------QHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDD   69 (84)
Q Consensus         8 ~~~~~~~~v~~~~~~~~----------~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~   69 (84)
                      +..| ...|.+++|+|.          +.++++|+.|+.+++||+.....        ...|.+++|+|++ .+++++.|
T Consensus       201 ~~~h-~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D  278 (287)
T d1pgua2         201 WAFR-TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGAD  278 (287)
T ss_dssp             SCCC-SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETT
T ss_pred             cccc-ccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECC
Confidence            4556 889999999874          46899999999999999876433        5689999999986 58889999


Q ss_pred             CcEEEEeC
Q psy16880         70 GSICMWNL   77 (84)
Q Consensus        70 ~~i~~~~~   77 (84)
                      +.|++|++
T Consensus       279 ~~v~iW~i  286 (287)
T d1pgua2         279 ACIKRWNV  286 (287)
T ss_dssp             SCEEEEEE
T ss_pred             CeEEEEEE
Confidence            99999985

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.5e-12  Score=68.31  Aligned_cols=77  Identities=27%  Similarity=0.606  Sum_probs=61.6

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecCCCc
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGDDGS   71 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~   71 (84)
                      +++++.+..| ...+.+++++  +..+++++.++.+++||......          ...+.++.++  +..+++++.|+.
T Consensus       207 ~~~~~~~~~~-~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~  281 (342)
T d2ovrb2         207 GNCIHTLTGH-QSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGT  281 (342)
T ss_dssp             CCEEEEECCC-CSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSE
T ss_pred             ceeeeEeccc-ccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCE
Confidence            4667788888 8888887764  57999999999999999976654          3455556554  568999999999


Q ss_pred             EEEEeCCCCeec
Q psy16880         72 ICMWNLNSKLCD   83 (84)
Q Consensus        72 i~~~~~~~~~~~   83 (84)
                      |++||+++++++
T Consensus       282 i~iwd~~tg~~i  293 (342)
T d2ovrb2         282 VKLWDLKTGEFI  293 (342)
T ss_dssp             EEEEETTTCCEE
T ss_pred             EEEEECCCCCEE
Confidence            999999988764

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.43  E-value=2.3e-12  Score=68.43  Aligned_cols=72  Identities=8%  Similarity=0.045  Sum_probs=61.8

Q ss_pred             cCCCcCEEEEEEccCCCEEEEeCCCC--cEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880         10 HSNNSAVRSISFCSKQHTLISGGDDG--SICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        10 ~~~~~~v~~~~~~~~~~~l~~~~~~~--~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (84)
                      .| ...|.+++|+|+++.|++++.+.  .+.+||...+..      ...+.+++|+|+++.+++++.++.+.+|+..+++
T Consensus        40 ~~-~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  118 (360)
T d1k32a3          40 PE-PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK  118 (360)
T ss_dssp             SC-CSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             cC-CCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccccc
Confidence            46 88999999999999887665443  788999987655      6789999999999999999999999999998766


Q ss_pred             e
Q psy16880         82 C   82 (84)
Q Consensus        82 ~   82 (84)
                      .
T Consensus       119 ~  119 (360)
T d1k32a3         119 P  119 (360)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.42  E-value=4.8e-13  Score=74.02  Aligned_cols=81  Identities=17%  Similarity=0.025  Sum_probs=63.6

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEE----EEccCCCEE-EEec
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSI----SFCSKQRTL-ISGG   67 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~----~~~~~~~~~-~~~~   67 (84)
                      +++++..++.+ . .+..++|+|+|+++++++.++.+.+||+.+...        ......+    .|+|+++.+ +++.
T Consensus        51 t~~v~~~~~~g-~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~  128 (432)
T d1qksa2          51 TYEIKTVLDTG-Y-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAY  128 (432)
T ss_dssp             TCCEEEEEECS-S-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE
T ss_pred             CCcEEEEEeCC-C-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcC
Confidence            57788888876 4 578999999999999999999999999976543        1233344    456788875 6777


Q ss_pred             CCCcEEEEeCCCCeec
Q psy16880         68 DDGSICMWNLNSKLCD   83 (84)
Q Consensus        68 ~~~~i~~~~~~~~~~~   83 (84)
                      .++.+.+||..+++++
T Consensus       129 ~~~~v~i~d~~t~~~~  144 (432)
T d1qksa2         129 WPPQYVIMDGETLEPK  144 (432)
T ss_dssp             ETTEEEEEETTTCCEE
T ss_pred             CCCeEEEEeCccccce
Confidence            8999999999887654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.42  E-value=5.3e-13  Score=73.35  Aligned_cols=81  Identities=17%  Similarity=0.034  Sum_probs=63.2

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------------CCCEEEEEEccCCCEEEE-ec
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------------DSAVRSISFCSKQRTLIS-GG   67 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------------~~~v~~~~~~~~~~~~~~-~~   67 (84)
                      +++.+.+++.+ . .+..++|+|+|+++++++.++.+.+||+.+...            ...+..++|+|+++.+++ +.
T Consensus        51 t~~~~~~l~~g-~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~  128 (426)
T d1hzua2          51 SKKIVKVIDTG-Y-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY  128 (426)
T ss_dssp             TCSEEEEEECC-S-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE
T ss_pred             CCcEEEEEeCC-C-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeec
Confidence            57788888876 4 578999999999999999999999999987654            122344556688987654 45


Q ss_pred             CCCcEEEEeCCCCeec
Q psy16880         68 DDGSICMWNLNSKLCD   83 (84)
Q Consensus        68 ~~~~i~~~~~~~~~~~   83 (84)
                      .++.+.+||..+.+++
T Consensus       129 ~~~~v~i~d~~~~~~~  144 (426)
T d1hzua2         129 WPPQFAIMDGETLEPK  144 (426)
T ss_dssp             ESSEEEEEETTTCCEE
T ss_pred             CCCeEEEEcCCcccee
Confidence            6889999999877643

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.40  E-value=9e-13  Score=72.44  Aligned_cols=80  Identities=9%  Similarity=0.044  Sum_probs=64.2

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEE-------eCCCCcEEEEeCCCCCC----------------CCCEEEEEEcc
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLIS-------GGDDGSICMWNLNSKLC----------------DSAVRSISFCS   58 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~-------~~~~~~~~~~d~~~~~~----------------~~~v~~~~~~~   58 (84)
                      ++....+++| ...+..++++|+++.++.       +..++.+++||+.+...                ...+.+++|+|
T Consensus       293 ~~~~~~l~g~-~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp  371 (426)
T d1hzua2         293 WKKVAELQGQ-GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK  371 (426)
T ss_dssp             TSEEEEEECS-SSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS
T ss_pred             ceEeEEEecC-CCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC
Confidence            4667788888 888999999999999984       45578899999977643                33588999999


Q ss_pred             CCCEEEEe-----cCCCcEEEEeCCCCee
Q psy16880         59 KQRTLISG-----GDDGSICMWNLNSKLC   82 (84)
Q Consensus        59 ~~~~~~~~-----~~~~~i~~~~~~~~~~   82 (84)
                      +|+.++..     +.++.|.+||.++.+.
T Consensus       372 DGk~i~vs~~~~~~~~~~i~v~D~~T~k~  400 (426)
T d1hzua2         372 RGDEVWFSVWNGKNDSSALVVVDDKTLKL  400 (426)
T ss_dssp             SSSEEEEEECCCTTSCCEEEEEETTTTEE
T ss_pred             CCCEEEEEEecCCCCCCeEEEEECCCCeE
Confidence            99877432     3578899999999875

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.30  E-value=6.8e-11  Score=61.76  Aligned_cols=70  Identities=23%  Similarity=0.390  Sum_probs=56.2

Q ss_pred             cCEEEEEEcc-CCCEEEEeCCCCcEEEEeCCCCCC----------------------CCCEEEEEEccCCCEEEEecCCC
Q psy16880         14 SAVRSISFCS-KQHTLISGGDDGSICMWNLNSKLC----------------------DSAVRSISFCSKQRTLISGGDDG   70 (84)
Q Consensus        14 ~~v~~~~~~~-~~~~l~~~~~~~~~~~~d~~~~~~----------------------~~~v~~~~~~~~~~~~~~~~~~~   70 (84)
                      ..+.+..+.+ ++..+++++.++.+.+|+......                      ...+.+++|+|++..+++++.|+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg  273 (342)
T d1yfqa_         194 YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG  273 (342)
T ss_dssp             SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS
T ss_pred             cceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCC
Confidence            3445555555 677899999999999998764432                      23578999999999999999999


Q ss_pred             cEEEEeCCCCeec
Q psy16880         71 SICMWNLNSKLCD   83 (84)
Q Consensus        71 ~i~~~~~~~~~~~   83 (84)
                      .|++||+.+++.+
T Consensus       274 ~v~vWD~~~~~~l  286 (342)
T d1yfqa_         274 IISCWNLQTRKKI  286 (342)
T ss_dssp             CEEEEETTTTEEE
T ss_pred             EEEEEECCCCcEE
Confidence            9999999988765

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.20  E-value=1.3e-10  Score=61.55  Aligned_cols=77  Identities=10%  Similarity=0.131  Sum_probs=63.5

Q ss_pred             EEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEec----------
Q psy16880          5 IHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGG----------   67 (84)
Q Consensus         5 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~----------   67 (84)
                      ++.+..+ .+.|.+++|+|+++.+++++.++.+.+|+......       ...+.+++|+|+++.++...          
T Consensus        78 ~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~  156 (360)
T d1k32a3          78 AEKFEEN-LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY  156 (360)
T ss_dssp             EEECCCC-CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred             EEEeeCC-CceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeec
Confidence            4456667 89999999999999999999999999999987665       55678899999999887543          


Q ss_pred             CCCcEEEEeCCCCee
Q psy16880         68 DDGSICMWNLNSKLC   82 (84)
Q Consensus        68 ~~~~i~~~~~~~~~~   82 (84)
                      .++.+.+|+..+++.
T Consensus       157 ~~~~~~v~d~~~~~~  171 (360)
T d1k32a3         157 VMQAIHVYDMEGRKI  171 (360)
T ss_dssp             CEEEEEEEETTTTEE
T ss_pred             cccceeeeccccCce
Confidence            344688999987664

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=7.6e-10  Score=56.76  Aligned_cols=78  Identities=14%  Similarity=0.365  Sum_probs=61.6

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----CCCEEEEEEccCCCEEEEecCCCcEEEE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----DSAVRSISFCSKQRTLISGGDDGSICMW   75 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~i~~~   75 (84)
                      ++++++++++| .+.|.+++|  +++.|++++.|+.+.+|++.....     ........+.+....++++..++.+.+|
T Consensus        44 ~~~~~~~l~~H-~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (293)
T d1p22a2          44 TLECKRILTGH-TGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW  120 (293)
T ss_dssp             SCCEEEEECCC-SSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEE
T ss_pred             CCcEEEEEecC-CCCEeeeec--ccceeecccccccccccccccccccccccccccccccccccccceeecccccceeEe
Confidence            47788999999 999999887  678999999999999999987655     2223334445556678888899999999


Q ss_pred             eCCCCe
Q psy16880         76 NLNSKL   81 (84)
Q Consensus        76 ~~~~~~   81 (84)
                      +.....
T Consensus       121 ~~~~~~  126 (293)
T d1p22a2         121 DMASPT  126 (293)
T ss_dssp             ECSSSS
T ss_pred             eccccc
Confidence            987543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.14  E-value=7e-10  Score=58.17  Aligned_cols=69  Identities=10%  Similarity=0.131  Sum_probs=58.2

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      ...+..+.+++++..++.+  ++.+.+||+.+...      ...+.+++|+|+++.+++++.++.|.+||..+.+.+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         240 DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             CcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence            5566778888888887765  47899999987766      567889999999999999999999999999988754

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.12  E-value=1.2e-10  Score=61.42  Aligned_cols=64  Identities=11%  Similarity=0.111  Sum_probs=54.0

Q ss_pred             EEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEE-EEecCCCcEEEEeCCCCeec
Q psy16880         20 SFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTL-ISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~   83 (84)
                      +++++++++++++.++.+.+||+.+.+.        ...+.+++|+|+++.+ +++..++.|.+||+.+++.+
T Consensus         3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~   75 (346)
T d1jmxb_           3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT   75 (346)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeee
Confidence            5788999999999999999999988765        3357799999999876 45567899999999987654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.11  E-value=2.8e-09  Score=55.19  Aligned_cols=70  Identities=6%  Similarity=0.034  Sum_probs=55.6

Q ss_pred             cCEEEEEEccCCCEEEEe---CCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEE-EEecCCCcEEEEeCCCCeec
Q psy16880         14 SAVRSISFCSKQHTLISG---GDDGSICMWNLNSKLC------DSAVRSISFCSKQRTL-ISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~~~---~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~   83 (84)
                      .....+.+++++..++.+   ..++.+.+||..+...      ...+.+++|+|+++.+ ++++.++.|.+||+.+++.+
T Consensus       200 ~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~  279 (301)
T d1l0qa2         200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT  279 (301)
T ss_dssp             SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence            445678899999876544   3446799999987655      5678999999999876 57777899999999998765

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.09  E-value=5.4e-10  Score=58.80  Aligned_cols=70  Identities=16%  Similarity=0.142  Sum_probs=57.6

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      ...+..+.+++++..++.... +.+.+||..+...      ...+.+++|+|+++.+++++.++.|.+||..+++.+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i  326 (346)
T d1jmxb_         251 TELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV  326 (346)
T ss_dssp             SSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             cceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEE
Confidence            566778888887766665543 4789999987655      567889999999999999999999999999998865

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.02  E-value=8.8e-09  Score=53.27  Aligned_cols=81  Identities=5%  Similarity=0.128  Sum_probs=62.4

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEE-EEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEE-EecCCCcE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTL-ISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLI-SGGDDGSI   72 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~-~~~~~~~i   72 (84)
                      +++.+++++..  .....++++|+++++ +++..++.+.+||+.+...      ...+..+.+++++..++ ++..+..+
T Consensus        21 t~~~~~~i~~g--~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (301)
T d1l0qa2          21 SNKVTATIPVG--SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTL   98 (301)
T ss_dssp             TTEEEEEEECS--SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             CCeEEEEEECC--CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccccccccccccccccee
Confidence            46677777653  456789999999976 5777889999999987655      45678999999887555 45567789


Q ss_pred             EEEeCCCCeec
Q psy16880         73 CMWNLNSKLCD   83 (84)
Q Consensus        73 ~~~~~~~~~~~   83 (84)
                      .+|+..+++..
T Consensus        99 ~~~~~~~~~~~  109 (301)
T d1l0qa2          99 SVIDTTSNTVA  109 (301)
T ss_dssp             EEEETTTTEEE
T ss_pred             eecccccceee
Confidence            99998877643

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.93  E-value=1.6e-09  Score=56.73  Aligned_cols=58  Identities=5%  Similarity=-0.017  Sum_probs=48.0

Q ss_pred             CEEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEE-EEecCCCcEEEEeCCCCeec
Q psy16880         26 HTLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTL-ISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        26 ~~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~   83 (84)
                      .++++++.++.+.+||+.+...         ...+..++|+|+++.+ ++++.++.|.+||+.+++.+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~   69 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL   69 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEE
Confidence            4688999999999999987765         2457899999999877 46677899999999988754

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.93  E-value=5.8e-09  Score=57.59  Aligned_cols=56  Identities=23%  Similarity=0.195  Sum_probs=49.3

Q ss_pred             CEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880         26 HTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        26 ~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (84)
                      -++++.+.++.+.+||..+...      ...+..++|+|+++.+++++.|+.+.+||+.+.+
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~   94 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE   94 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCC
Confidence            4468999999999999998777      4569999999999999999999999999987654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=1.3e-08  Score=53.39  Aligned_cols=68  Identities=10%  Similarity=0.157  Sum_probs=53.5

Q ss_pred             CcCEEEEEEccCCCEE-EEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecC-CCcEEEEeCCCC
Q psy16880         13 NSAVRSISFCSKQHTL-ISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGD-DGSICMWNLNSK   80 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l-~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~   80 (84)
                      .+.+..|+|+|+|+.| +++..++.+.+|++.....          ...+.+++|+|+++.+++++. ++.+.+|+....
T Consensus        36 ~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~  115 (333)
T d1ri6a_          36 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG  115 (333)
T ss_dssp             SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             CCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccc
Confidence            6778999999999987 4556689999999875533          456788999999998888775 567888876543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.71  E-value=1.9e-07  Score=49.76  Aligned_cols=56  Identities=7%  Similarity=-0.035  Sum_probs=44.5

Q ss_pred             EEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCE--EEEecCCCcEEEEeCCCCeec
Q psy16880         28 LISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRT--LISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        28 l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      ++.....+.+.+||..+...      ...+..++|+|+++.  +++++.++.|.+||..+++.+
T Consensus       291 ~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~  354 (373)
T d2madh_         291 WKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             EEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence            34455566788999877765      567899999999984  467888999999999998865

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.71  E-value=1e-07  Score=52.63  Aligned_cols=69  Identities=9%  Similarity=0.081  Sum_probs=55.8

Q ss_pred             CcCEEEEEEccCCCEEEEeCC---------CCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880         13 NSAVRSISFCSKQHTLISGGD---------DGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGDDGSICMWNL   77 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~---------~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (84)
                      ...|.++.|+|+++.++.++.         .+.+.+||+.++..      ...+..+.|+|+++.++... ++.+.+|+.
T Consensus        61 ~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~  139 (470)
T d2bgra1          61 GHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIE  139 (470)
T ss_dssp             SSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESS
T ss_pred             cCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCccccccccccCcceeeEee-cccceEEEC
Confidence            466899999999999887743         45778999987655      56789999999999998864 678999988


Q ss_pred             CCCee
Q psy16880         78 NSKLC   82 (84)
Q Consensus        78 ~~~~~   82 (84)
                      .+++.
T Consensus       140 ~~g~~  144 (470)
T d2bgra1         140 PNLPS  144 (470)
T ss_dssp             TTSCC
T ss_pred             CCCce
Confidence            77654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.66  E-value=6.2e-08  Score=51.24  Aligned_cols=66  Identities=8%  Similarity=0.074  Sum_probs=49.8

Q ss_pred             EEEEccCCCEEEEeCCC----------CcEEEEeCCCCCC------CCCEEEEEEccCCC--EEEEecCCCcEEEEeCCC
Q psy16880         18 SISFCSKQHTLISGGDD----------GSICMWNLNSKLC------DSAVRSISFCSKQR--TLISGGDDGSICMWNLNS   79 (84)
Q Consensus        18 ~~~~~~~~~~l~~~~~~----------~~~~~~d~~~~~~------~~~v~~~~~~~~~~--~~~~~~~~~~i~~~~~~~   79 (84)
                      .+++++++..++....+          ..+.+||..+...      ...+.+++|+|+++  .++++..++.|.+||.++
T Consensus       253 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~t  332 (355)
T d2bbkh_         253 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES  332 (355)
T ss_dssp             CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred             EEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCC
Confidence            46778888776554322          3688999887655      45678999999987  456677799999999999


Q ss_pred             Ceec
Q psy16880         80 KLCD   83 (84)
Q Consensus        80 ~~~~   83 (84)
                      ++.+
T Consensus       333 g~~~  336 (355)
T d2bbkh_         333 GEEL  336 (355)
T ss_dssp             CCEE
T ss_pred             CCEE
Confidence            8865

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.61  E-value=1.3e-07  Score=50.02  Aligned_cols=80  Identities=10%  Similarity=0.054  Sum_probs=56.9

Q ss_pred             CCceEEEeccCCCcCEEEEEEccCCCEEEEeC----------CCCcEEEEeCCCCCC--------------CCCEEEEEE
Q psy16880          1 DGSIIHTFVHSNNSAVRSISFCSKQHTLISGG----------DDGSICMWNLNSKLC--------------DSAVRSISF   56 (84)
Q Consensus         1 ~g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~~~~~~~~d~~~~~~--------------~~~v~~~~~   56 (84)
                      +|+++.++... ..+  .++|+|+++.++.++          .++.+.+||..+...              ......++|
T Consensus        37 tg~~~~~~~~g-~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (355)
T d2bbkh_          37 AGRVIGMIDGG-FLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL  113 (355)
T ss_dssp             TTEEEEEEEEC-SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE
T ss_pred             CCcEEEEEECC-CCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEE
Confidence            45666666554 333  689999999876543          467899999987654              223456889


Q ss_pred             ccCCCEEEEec--CCCcEEEEeCCCCeec
Q psy16880         57 CSKQRTLISGG--DDGSICMWNLNSKLCD   83 (84)
Q Consensus        57 ~~~~~~~~~~~--~~~~i~~~~~~~~~~~   83 (84)
                      +|+++.++...  .+..+.+|+..+++.+
T Consensus       114 s~dg~~~~v~~~~~~~~~~~~~~~~~~~~  142 (355)
T d2bbkh_         114 TPDGKTLLFYQFSPAPAVGVVDLEGKAFK  142 (355)
T ss_dssp             CTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred             ecCCCeeEEecCCCCceeeeeecCCCcEe
Confidence            99998777654  4567899999887643

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.56  E-value=1.3e-07  Score=50.78  Aligned_cols=79  Identities=9%  Similarity=0.001  Sum_probs=56.8

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeC----------CCCcEEEEeCCCCCC--------------CCCEEEEEEc
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGG----------DDGSICMWNLNSKLC--------------DSAVRSISFC   57 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~~~~~~~~d~~~~~~--------------~~~v~~~~~~   57 (84)
                      ++.+..++.+ ...  .+.|+|+++.++..+          .+..+.+||..+...              ......++|+
T Consensus        56 ~~~~~~~~~~-~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~S  132 (368)
T d1mdah_          56 GVTLGHSLGA-FLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC  132 (368)
T ss_dssp             TEEEEEEEEC-TTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC
T ss_pred             CcEEEEEeCC-CCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEEC
Confidence            4556666655 333  478999999887653          356799999987654              1223468999


Q ss_pred             cCCCEEEEec-CCCcEEEEeCCCCeec
Q psy16880         58 SKQRTLISGG-DDGSICMWNLNSKLCD   83 (84)
Q Consensus        58 ~~~~~~~~~~-~~~~i~~~~~~~~~~~   83 (84)
                      |+++.++.+. .++.+.+||+.+++.+
T Consensus       133 pDGk~l~va~~~~~~v~~~d~~~~~~~  159 (368)
T d1mdah_         133 ASSACLLFFLFGSSAAAGLSVPGASDD  159 (368)
T ss_dssp             TTSSCEEEEECSSSCEEEEEETTTEEE
T ss_pred             CCCCEEEEEeCCCCeEEEEECCCCcEe
Confidence            9999887665 4689999999887753

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.52  E-value=4.7e-07  Score=48.22  Aligned_cols=71  Identities=3%  Similarity=-0.129  Sum_probs=53.8

Q ss_pred             CcCEEEEEEccCCCEEEEe-----CCCCcEEEEeCCCCCC-----CCCEEEEEEccCCCEEEEec----------CCCcE
Q psy16880         13 NSAVRSISFCSKQHTLISG-----GDDGSICMWNLNSKLC-----DSAVRSISFCSKQRTLISGG----------DDGSI   72 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~-----~~~~~~~~~d~~~~~~-----~~~v~~~~~~~~~~~~~~~~----------~~~~i   72 (84)
                      .+++..++++|+++.++..     +....+.+||..+.+.     ......+.|+|+++.+++..          .++.+
T Consensus        20 ~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v   99 (373)
T d2madh_          20 DGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYV   99 (373)
T ss_pred             CCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCccEEEcCCCCEEEEEeecCCcccccccceEE
Confidence            6788899999999987654     2345688899877665     23344799999999988764          35779


Q ss_pred             EEEeCCCCeec
Q psy16880         73 CMWNLNSKLCD   83 (84)
Q Consensus        73 ~~~~~~~~~~~   83 (84)
                      .+||..+++.+
T Consensus       100 ~v~D~~t~~~~  110 (373)
T d2madh_         100 EVFDPVTFLPI  110 (373)
T ss_pred             EEEECCCCcEE
Confidence            99999987753

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=2.6e-07  Score=48.28  Aligned_cols=54  Identities=19%  Similarity=0.362  Sum_probs=42.6

Q ss_pred             EEEEeCCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEe-cCCCcEEEEeCCCC
Q psy16880         27 TLISGGDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISG-GDDGSICMWNLNSK   80 (84)
Q Consensus        27 ~l~~~~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~   80 (84)
                      .++++..++.+++|+++....         ...+..++|+|+++.++++ ..++.|.+|++...
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~   69 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD   69 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCC
Confidence            457788999999999875432         6778999999999988554 45789999987644

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.29  E-value=2.1e-06  Score=45.91  Aligned_cols=66  Identities=3%  Similarity=-0.053  Sum_probs=47.9

Q ss_pred             EEEEccCCCEEEEeCC---------CCcEEEEeCCCCCC------CCCEEEEEEccCCC--EEEEecCCCcEEEEeCCCC
Q psy16880         18 SISFCSKQHTLISGGD---------DGSICMWNLNSKLC------DSAVRSISFCSKQR--TLISGGDDGSICMWNLNSK   80 (84)
Q Consensus        18 ~~~~~~~~~~l~~~~~---------~~~~~~~d~~~~~~------~~~v~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~   80 (84)
                      .+++++++..+.....         ...+.+||..+.+.      ...+..++|+|+++  .+++...++.|.+||..++
T Consensus       268 ~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg  347 (368)
T d1mdah_         268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             eEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence            4667777766544321         23578899887765      45678899999986  3456677899999999998


Q ss_pred             eec
Q psy16880         81 LCD   83 (84)
Q Consensus        81 ~~~   83 (84)
                      +.+
T Consensus       348 k~~  350 (368)
T d1mdah_         348 QDQ  350 (368)
T ss_dssp             EEE
T ss_pred             CEE
Confidence            865

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.04  E-value=8.2e-05  Score=38.95  Aligned_cols=72  Identities=18%  Similarity=0.284  Sum_probs=54.4

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-----CCCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-----DSAVRSISFCSKQRTLISGGDDGSICMWNL   77 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (84)
                      .+..+..  ...+..+++.|+|+++++...++.|..+|......     ...+.+++|.++++++++...++.+..++.
T Consensus        20 v~~~~p~--~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~   96 (302)
T d2p4oa1          20 IITSFPV--NTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSL   96 (302)
T ss_dssp             EEEEECT--TCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             EEEECCC--CCCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEe
Confidence            3444443  24578899999999999999999888887654333     677899999999998888777777766654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.95  E-value=2.2e-05  Score=43.17  Aligned_cols=64  Identities=14%  Similarity=0.222  Sum_probs=49.7

Q ss_pred             EEEEEccCCCEEEEeCCCCcEEEEeCCCCCC------------CCCEEEEEEccCCCEEEEecC---------CCcEEEE
Q psy16880         17 RSISFCSKQHTLISGGDDGSICMWNLNSKLC------------DSAVRSISFCSKQRTLISGGD---------DGSICMW   75 (84)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~------------~~~v~~~~~~~~~~~~~~~~~---------~~~i~~~   75 (84)
                      ..+.|.++++++...  ++.+.+||..++..            ...|..+.|+|+++.++..+.         ++.+.+|
T Consensus        20 ~~~~W~~d~~~~~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEES--SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEEc--CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            357799988877643  56789999987754            356899999999999887642         4568899


Q ss_pred             eCCCCee
Q psy16880         76 NLNSKLC   82 (84)
Q Consensus        76 ~~~~~~~   82 (84)
                      |+.+++.
T Consensus        98 d~~~~~~  104 (470)
T d2bgra1          98 DLNKRQL  104 (470)
T ss_dssp             ETTTTEE
T ss_pred             ECCCCcc
Confidence            9988764

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.64  E-value=0.00088  Score=36.00  Aligned_cols=66  Identities=11%  Similarity=0.105  Sum_probs=48.4

Q ss_pred             CEEEEEEccCCCEEEEeCC-CCcEEEEeCCCCCC------------CCCEEEEEEccCCCEEEEec-CCCcEEEEeCCCC
Q psy16880         15 AVRSISFCSKQHTLISGGD-DGSICMWNLNSKLC------------DSAVRSISFCSKQRTLISGG-DDGSICMWNLNSK   80 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~~~~~-~~~~~~~d~~~~~~------------~~~v~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~   80 (84)
                      .+.++.|+|++++++.++. ...+.+|+......            ....+++.|+|+++.+.+.. .++.|.+|+....
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            4679999999997776643 44777776543322            45789999999999775544 5788999987544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.31  E-value=0.0023  Score=32.95  Aligned_cols=79  Identities=8%  Similarity=0.166  Sum_probs=54.0

Q ss_pred             CceEEEec--cCCCcCEEEEEEccCCCEEEEeC-CCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCC
Q psy16880          2 GSIIHTFV--HSNNSAVRSISFCSKQHTLISGG-DDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDG   70 (84)
Q Consensus         2 g~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~-~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~   70 (84)
                      |+.+.++-  +. ......|++.++++.+++-. .+..+.+|+......        ......+++.|++..++ .+.++
T Consensus       187 G~~~~~~g~~g~-~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~  264 (279)
T d1q7fa_         187 GQYLRQIGGEGI-TNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDY  264 (279)
T ss_dssp             CCEEEEESCTTT-SCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTT
T ss_pred             Cceeeeeccccc-ccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCC
Confidence            45555552  23 34567899999999887754 345688888643322        33678999999987554 45788


Q ss_pred             cEEEEeCCCCee
Q psy16880         71 SICMWNLNSKLC   82 (84)
Q Consensus        71 ~i~~~~~~~~~~   82 (84)
                      .|++|+.....+
T Consensus       265 ~v~~fr~~~~~~  276 (279)
T d1q7fa_         265 RLYIYRYVQLAP  276 (279)
T ss_dssp             EEEEEECSCCCC
T ss_pred             eEEEEEeeeecC
Confidence            999999876544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.29  E-value=0.0011  Score=36.99  Aligned_cols=72  Identities=8%  Similarity=0.146  Sum_probs=53.4

Q ss_pred             eEEEeccCCCcCEEEEEEccCCCEE-EEeCCCCcEEEEeCCCCCC------------------CCCEEEEEEccCCCEEE
Q psy16880          4 IIHTFVHSNNSAVRSISFCSKQHTL-ISGGDDGSICMWNLNSKLC------------------DSAVRSISFCSKQRTLI   64 (84)
Q Consensus         4 ~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~~~~~~~d~~~~~~------------------~~~v~~~~~~~~~~~~~   64 (84)
                      .++.++.. .++ ..+.++|+|+++ +++..++.+.+||+.....                  .-...+.+|.+++....
T Consensus       250 v~~~IPvg-ksP-hGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yt  327 (441)
T d1qnia2         250 FTRYIPVP-KNP-HGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYT  327 (441)
T ss_dssp             SEEEECCB-SSC-CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEE
T ss_pred             eEEEEeCC-CCc-cCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEE
Confidence            34555554 444 578999999965 5678899999999854221                  22356778999998777


Q ss_pred             EecCCCcEEEEeC
Q psy16880         65 SGGDDGSICMWNL   77 (84)
Q Consensus        65 ~~~~~~~i~~~~~   77 (84)
                      +...|..+..|++
T Consensus       328 s~~~ds~v~kw~~  340 (441)
T d1qnia2         328 TLFIDSQVCKWNI  340 (441)
T ss_dssp             EETTTTEEEEEEH
T ss_pred             cccccceEEEecc
Confidence            7888999999986

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=96.97  E-value=0.0061  Score=31.65  Aligned_cols=68  Identities=18%  Similarity=0.187  Sum_probs=51.0

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCCC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGDDGSICMWNLNSK   80 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   80 (84)
                      ...+..+++.+++.++++......+..++......          ......+.+.++++++++-+.++.+..++...+
T Consensus        67 ~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~  144 (302)
T d2p4oa1          67 EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP  144 (302)
T ss_dssp             SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred             CCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCC
Confidence            56688999999999998887777777766543322          345788899999988877777777777776654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=96.78  E-value=0.01  Score=31.22  Aligned_cols=63  Identities=6%  Similarity=0.191  Sum_probs=48.3

Q ss_pred             EEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCC-EEEEecCCCcEEEEeCC
Q psy16880         16 VRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQR-TLISGGDDGSICMWNLN   78 (84)
Q Consensus        16 v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~-~~~~~~~~~~i~~~~~~   78 (84)
                      .-.|++.++|+++++....+.|..||......       ....++++|.|+++ +.++.+.++.|...+..
T Consensus       228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             ceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            34678888999888887788999999775543       35688999999886 55666677888887753

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.64  E-value=0.011  Score=29.70  Aligned_cols=69  Identities=9%  Similarity=0.090  Sum_probs=43.3

Q ss_pred             CcCEEEEEEccCCCEEEEeCC-CCcEEEE--eCCCCCC-----CCCEEEEEEccCCCEEEEecC---CCcEEEEeCCCCe
Q psy16880         13 NSAVRSISFCSKQHTLISGGD-DGSICMW--NLNSKLC-----DSAVRSISFCSKQRTLISGGD---DGSICMWNLNSKL   81 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~-~~~~~~~--d~~~~~~-----~~~v~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~   81 (84)
                      ........|+|++..++..+. .+...+|  |......     ........|+|+|+.++..+.   ...+.++++..+.
T Consensus       170 ~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~  249 (269)
T d2hqsa1         170 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF  249 (269)
T ss_dssp             SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred             cccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            344566789999987765543 3344444  4333222     445667889999998875443   3357788877654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.012  Score=29.48  Aligned_cols=56  Identities=11%  Similarity=0.071  Sum_probs=37.7

Q ss_pred             CcCEEEEEEccCCCEEEEe-CCCC--cEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecC
Q psy16880         13 NSAVRSISFCSKQHTLISG-GDDG--SICMWNLNSKLC------DSAVRSISFCSKQRTLISGGD   68 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~-~~~~--~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~   68 (84)
                      ...+..-+|+|+|+.|+-. ...+  .+.+.+......      ........|+|++..++....
T Consensus        38 ~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~  102 (269)
T d2hqsa1          38 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALS  102 (269)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred             CCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeee
Confidence            5667788999999988754 2222  344445544433      567788899999988876543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.56  E-value=0.015  Score=30.50  Aligned_cols=63  Identities=11%  Similarity=0.169  Sum_probs=46.7

Q ss_pred             EEEEEEccCCCEE-EEeCCCCcEEEEeCCCCCC---------------CCCEEEEEEccCCCEEEEecCCCcEEEEeCC
Q psy16880         16 VRSISFCSKQHTL-ISGGDDGSICMWNLNSKLC---------------DSAVRSISFCSKQRTLISGGDDGSICMWNLN   78 (84)
Q Consensus        16 v~~~~~~~~~~~l-~~~~~~~~~~~~d~~~~~~---------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~   78 (84)
                      ...++|+|+++.| ++-...+.+..||+.....               ......+++.+++++.++....+.|.+++..
T Consensus       179 pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~  257 (319)
T d2dg1a1         179 ANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  257 (319)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             eeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC
Confidence            4568999998755 5657778888898764322               1235678999999877777778899999864

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.0058  Score=33.94  Aligned_cols=66  Identities=9%  Similarity=0.013  Sum_probs=46.2

Q ss_pred             CEEEEEEccCCCEEEEe---------CCCCcEEEEeCCCCCC---------CCCEEEEEEccCCCEEEEecCCCcEEEEe
Q psy16880         15 AVRSISFCSKQHTLISG---------GDDGSICMWNLNSKLC---------DSAVRSISFCSKQRTLISGGDDGSICMWN   76 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~~~---------~~~~~~~~~d~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~   76 (84)
                      .+....++|+++.++..         +..+.+.++|+.++..         ...+....|+|+|+.++-+. ++.+.+.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~  140 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCA  140 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEES
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEe
Confidence            46677899999987665         3356778899876544         23455688999999888775 55677666


Q ss_pred             CCCCe
Q psy16880         77 LNSKL   81 (84)
Q Consensus        77 ~~~~~   81 (84)
                      ..++.
T Consensus       141 ~~~~~  145 (465)
T d1xfda1         141 HVGKQ  145 (465)
T ss_dssp             SSSSC
T ss_pred             cCCCc
Confidence            55443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=96.44  E-value=0.02  Score=30.57  Aligned_cols=64  Identities=9%  Similarity=0.180  Sum_probs=43.3

Q ss_pred             EEEEEEccCCCEEEEeCC------CCcEEEEeCCCCCC-------------CCCEEEEEEcc-CCCEEEEe-cCCCcEEE
Q psy16880         16 VRSISFCSKQHTLISGGD------DGSICMWNLNSKLC-------------DSAVRSISFCS-KQRTLISG-GDDGSICM   74 (84)
Q Consensus        16 v~~~~~~~~~~~l~~~~~------~~~~~~~d~~~~~~-------------~~~v~~~~~~~-~~~~~~~~-~~~~~i~~   74 (84)
                      ...+.++|+++++.++..      ...+..|++.....             .....+++++| ++++++++ ..++.|.+
T Consensus       257 ~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v  336 (365)
T d1jofa_         257 ADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEI  336 (365)
T ss_dssp             EEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEE
T ss_pred             ccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEE
Confidence            457889999998877632      22366676653321             34567799998 78867655 45789999


Q ss_pred             EeCCC
Q psy16880         75 WNLNS   79 (84)
Q Consensus        75 ~~~~~   79 (84)
                      |+...
T Consensus       337 ~~~~~  341 (365)
T d1jofa_         337 YRWKD  341 (365)
T ss_dssp             EEEET
T ss_pred             EEEeC
Confidence            97653

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=96.37  E-value=0.022  Score=31.72  Aligned_cols=32  Identities=6%  Similarity=0.181  Sum_probs=25.7

Q ss_pred             CCCEEEEEEccCCCEEE-EecCCCcEEEEeCCC
Q psy16880         48 DSAVRSISFCSKQRTLI-SGGDDGSICMWNLNS   79 (84)
Q Consensus        48 ~~~v~~~~~~~~~~~~~-~~~~~~~i~~~~~~~   79 (84)
                      .....++.++|++++++ ++..++++.+||+..
T Consensus       257 gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         257 PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             CCCccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            45568899999999765 566789999999754

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.18  E-value=0.021  Score=28.62  Aligned_cols=60  Identities=10%  Similarity=0.040  Sum_probs=38.3

Q ss_pred             EccC--CCEEEEeCCCCcEEEEeCCCCCC------CCCEEEEEEccCCCEEEEecC----CC--cEEEEeCCCCe
Q psy16880         21 FCSK--QHTLISGGDDGSICMWNLNSKLC------DSAVRSISFCSKQRTLISGGD----DG--SICMWNLNSKL   81 (84)
Q Consensus        21 ~~~~--~~~l~~~~~~~~~~~~d~~~~~~------~~~v~~~~~~~~~~~~~~~~~----~~--~i~~~~~~~~~   81 (84)
                      .+|+  |..++-.. ++.+.+.|+..+..      ........|+|+|+.++....    +.  .|.+.+..+++
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            4566  77666443 34566668776555      456788999999998875432    11  35566665554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.72  E-value=0.04  Score=27.54  Aligned_cols=60  Identities=10%  Similarity=0.111  Sum_probs=37.3

Q ss_pred             EEeccCCCcCEEEEEEccCCCEEEEe----CCCC--cEEEEeCCCCCC-------------CCCEEEEEEccCCCEEEEe
Q psy16880          6 HTFVHSNNSAVRSISFCSKQHTLISG----GDDG--SICMWNLNSKLC-------------DSAVRSISFCSKQRTLISG   66 (84)
Q Consensus         6 ~~~~~~~~~~v~~~~~~~~~~~l~~~----~~~~--~~~~~d~~~~~~-------------~~~v~~~~~~~~~~~~~~~   66 (84)
                      +.+... .+.+...+|+|+|+.++-.    +...  .+.+.+...+..             ........|+|+++.++..
T Consensus        34 ~~Lt~~-~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          34 RKIVSN-LGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             EEEECS-SSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             EEEecC-CCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEE
Confidence            344444 6677889999999988743    2222  344555544432             1234567899999877754

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.69  E-value=0.044  Score=27.73  Aligned_cols=65  Identities=8%  Similarity=0.066  Sum_probs=49.1

Q ss_pred             CEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCCC
Q psy16880         15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLNS   79 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~   79 (84)
                      ....+++.+++..+++......+..+|......       -.....+++.+++.+.++....+.|..++...
T Consensus       141 ~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~  212 (260)
T d1rwia_         141 DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS  212 (260)
T ss_dssp             SCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTC
T ss_pred             CcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCC
Confidence            346788889999888888888888888765433       34578899999988777777777788776543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.83  E-value=0.096  Score=26.71  Aligned_cols=78  Identities=13%  Similarity=0.191  Sum_probs=52.3

Q ss_pred             CceEEEeccCCCcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCCCcEE
Q psy16880          2 GSIIHTFVHSNNSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDDGSIC   73 (84)
Q Consensus         2 g~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~i~   73 (84)
                      |+....+..........+++.+++..+++......+.+++......        -.....+++.+++..+++....+.|.
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~  181 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVK  181 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEE
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEeeecccccee
Confidence            3344444322134456788888888888877777777777654322        34567788888888777777778888


Q ss_pred             EEeCCC
Q psy16880         74 MWNLNS   79 (84)
Q Consensus        74 ~~~~~~   79 (84)
                      +|+...
T Consensus       182 ~~d~~G  187 (279)
T d1q7fa_         182 VFNYEG  187 (279)
T ss_dssp             EEETTC
T ss_pred             eeecCC
Confidence            888654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.27  E-value=0.13  Score=25.89  Aligned_cols=65  Identities=6%  Similarity=0.036  Sum_probs=48.4

Q ss_pred             cCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEecCCCcEEEEeCC
Q psy16880         14 SAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGGDDGSICMWNLN   78 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~   78 (84)
                      .....+++.+++.++++....+.+..++......       -.....+++.+++.++++-..++.|..++..
T Consensus       182 ~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         182 TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             CSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             CCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence            4457889999999988888888888777654433       2457899999999877776667777766543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=94.08  E-value=0.17  Score=26.42  Aligned_cols=65  Identities=6%  Similarity=0.166  Sum_probs=44.7

Q ss_pred             EEEEEccCCC-----EEEEeCCCCcEEEEeCCCCCC--------------CCCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880         17 RSISFCSKQH-----TLISGGDDGSICMWNLNSKLC--------------DSAVRSISFCSKQRTLISGGDDGSICMWNL   77 (84)
Q Consensus        17 ~~~~~~~~~~-----~l~~~~~~~~~~~~d~~~~~~--------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (84)
                      ..++|++++.     ++++-...+.+..||+.....              ......+++.++++..++....+.|.+|+.
T Consensus       175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp  254 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence            4567877653     555667777888777653321              123567889889987777666788999998


Q ss_pred             CCCe
Q psy16880         78 NSKL   81 (84)
Q Consensus        78 ~~~~   81 (84)
                      ..++
T Consensus       255 ~~g~  258 (314)
T d1pjxa_         255 DGGQ  258 (314)
T ss_dssp             TCBS
T ss_pred             CCCE
Confidence            7654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.56  E-value=0.22  Score=25.97  Aligned_cols=53  Identities=13%  Similarity=0.141  Sum_probs=41.0

Q ss_pred             CEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC-------CCCEEEEEEccCCCEEEEec
Q psy16880         15 AVRSISFCSKQHTLISGGDDGSICMWNLNSKLC-------DSAVRSISFCSKQRTLISGG   67 (84)
Q Consensus        15 ~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-------~~~v~~~~~~~~~~~~~~~~   67 (84)
                      .+..+.|.++++++++-...+.|.-|+......       ......+++.++++++++..
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~  100 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYL  100 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEEC
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEec
Confidence            457889999999888887888888888765433       45678999999998776643

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.49  E-value=0.24  Score=27.42  Aligned_cols=62  Identities=8%  Similarity=0.153  Sum_probs=43.2

Q ss_pred             EEEccCCCEEEEeCCCCcEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEec---------CCCcEEEEeCCC
Q psy16880         19 ISFCSKQHTLISGGDDGSICMWNLNSKLC----------DSAVRSISFCSKQRTLISGG---------DDGSICMWNLNS   79 (84)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~---------~~~~i~~~~~~~   79 (84)
                      ..|.+++.++. -..++.+.+||+.+...          .-.+....++|+++.++...         ..+.+.++|+.+
T Consensus        22 ~~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            46777776554 34567888999876544          33567788999999877653         345678888876


Q ss_pred             Ce
Q psy16880         80 KL   81 (84)
Q Consensus        80 ~~   81 (84)
                      +.
T Consensus       101 ~~  102 (465)
T d1xfda1         101 GD  102 (465)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.02  E-value=0.66  Score=25.60  Aligned_cols=47  Identities=11%  Similarity=0.149  Sum_probs=35.7

Q ss_pred             CcCEEEEEEccCCCEEEEeCCCCcEEEEeCCCCCC---------------CCCEEEEEEccC
Q psy16880         13 NSAVRSISFCSKQHTLISGGDDGSICMWNLNSKLC---------------DSAVRSISFCSK   59 (84)
Q Consensus        13 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~---------------~~~v~~~~~~~~   59 (84)
                      ...-..|+|.|++++|++.-..|.|.+++......               +.....++++|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            34557999999999999887678888877654432               456778999885

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=88.34  E-value=0.96  Score=23.63  Aligned_cols=64  Identities=20%  Similarity=0.279  Sum_probs=43.8

Q ss_pred             EEEEccCCCEEEEeCCC-CcEEEEeCCCCCC--------CCCEEEEEEccCCCEEEEecCC------CcEEEEeCCCCe
Q psy16880         18 SISFCSKQHTLISGGDD-GSICMWNLNSKLC--------DSAVRSISFCSKQRTLISGGDD------GSICMWNLNSKL   81 (84)
Q Consensus        18 ~~~~~~~~~~l~~~~~~-~~~~~~d~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~   81 (84)
                      ...+.+++..++.|+.+ ..+.+||..+..-        ...-...+..+++++++.++..      ..+.+||+.+..
T Consensus        80 ~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          80 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             EEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            44677889998888655 4788898764422        2223456667788888887642      358889987765

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=86.68  E-value=1.2  Score=22.89  Aligned_cols=66  Identities=11%  Similarity=0.092  Sum_probs=45.2

Q ss_pred             cCEEEEEEccCCCEE-EEeCCCCcEEEEeCCCCCC---------------CCCEEEEEEccCCCEEEEecCCCcEEEEeC
Q psy16880         14 SAVRSISFCSKQHTL-ISGGDDGSICMWNLNSKLC---------------DSAVRSISFCSKQRTLISGGDDGSICMWNL   77 (84)
Q Consensus        14 ~~v~~~~~~~~~~~l-~~~~~~~~~~~~d~~~~~~---------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~   77 (84)
                      .....+.|++++..+ ++-+..+.+..++++....               .....++++..++.+.++.-..+.|..|+.
T Consensus       148 ~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp  227 (295)
T d2ghsa1         148 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT  227 (295)
T ss_dssp             SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             CCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC
Confidence            344678899988754 5556677888887753221               334678888888887666555677888886


Q ss_pred             CC
Q psy16880         78 NS   79 (84)
Q Consensus        78 ~~   79 (84)
                      ..
T Consensus       228 ~G  229 (295)
T d2ghsa1         228 DG  229 (295)
T ss_dssp             TC
T ss_pred             CC
Confidence            43

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.20  E-value=2.1  Score=24.36  Aligned_cols=24  Identities=17%  Similarity=0.234  Sum_probs=20.6

Q ss_pred             CCCEEEEeCCCCcEEEEeCCCCCC
Q psy16880         24 KQHTLISGGDDGSICMWNLNSKLC   47 (84)
Q Consensus        24 ~~~~l~~~~~~~~~~~~d~~~~~~   47 (84)
                      .+.++++|..|+.++.+|..+++.
T Consensus       496 agglVF~Gt~dg~l~A~Da~TGe~  519 (582)
T d1flga_         496 AGNLVFTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cCCeEEEeCCCCeEEEEECCCCcE
Confidence            466777899999999999998877

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=84.58  E-value=1.7  Score=22.69  Aligned_cols=60  Identities=15%  Similarity=0.298  Sum_probs=39.0

Q ss_pred             ccCCCEEEEeCCCC-----------cEEEEeCCCCCC----------CCCEEEEEEccCCCEEEEecCC-CcEEEEeCCC
Q psy16880         22 CSKQHTLISGGDDG-----------SICMWNLNSKLC----------DSAVRSISFCSKQRTLISGGDD-GSICMWNLNS   79 (84)
Q Consensus        22 ~~~~~~l~~~~~~~-----------~~~~~d~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~~   79 (84)
                      ..+++.++.|+...           .+.+||..+..-          ........+.+++.+++.++.+ ..+.+||+.+
T Consensus        28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~  107 (387)
T d1k3ia3          28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSS  107 (387)
T ss_dssp             TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGG
T ss_pred             eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCcc
Confidence            44677777765321           256899876533          1123456778899888888655 5789999865


Q ss_pred             Ce
Q psy16880         80 KL   81 (84)
Q Consensus        80 ~~   81 (84)
                      ..
T Consensus       108 ~~  109 (387)
T d1k3ia3         108 DS  109 (387)
T ss_dssp             TE
T ss_pred             Cc
Confidence            54

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=82.02  E-value=1.4  Score=25.08  Aligned_cols=25  Identities=12%  Similarity=0.201  Sum_probs=20.5

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         59 KQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        59 ~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      .+.++..++.|+.++.+|.++++.+
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKL  511 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEe
Confidence            4557777888999999999998864

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=81.91  E-value=2.7  Score=23.15  Aligned_cols=33  Identities=12%  Similarity=0.134  Sum_probs=25.7

Q ss_pred             CCEEEEEEccCCCEEEEecCCCcEEEEeCCCCe
Q psy16880         49 SAVRSISFCSKQRTLISGGDDGSICMWNLNSKL   81 (84)
Q Consensus        49 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (84)
                      ....+++|.|+++++++--.+|.|++++..+++
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~   59 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGS   59 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCc
Confidence            466899999999988776557889888776554

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=80.71  E-value=1.6  Score=24.72  Aligned_cols=24  Identities=8%  Similarity=0.167  Sum_probs=19.8

Q ss_pred             CCEEEEecCCCcEEEEeCCCCeec
Q psy16880         60 QRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        60 ~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      +.++..++.|+.++-+|..+++.+
T Consensus       469 gglVF~G~~dg~l~A~Da~tGe~L  492 (560)
T d1kv9a2         469 GNLVFQGTAAGQMHAYSADKGEAL  492 (560)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCEEEEECCCCcEEEEECCCCcEe
Confidence            456777888999999999998864

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=80.24  E-value=1.2  Score=25.52  Aligned_cols=25  Identities=12%  Similarity=-0.001  Sum_probs=20.4

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         59 KQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        59 ~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      .+.++..+..|+.++-+|.++++.+
T Consensus       483 agglVF~G~~Dg~l~A~Da~TGe~L  507 (596)
T d1w6sa_         483 AGDLVFYGTLDGYLKARDSDTGDLL  507 (596)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEe
Confidence            3456777888999999999998865

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.12  E-value=1.2  Score=25.40  Aligned_cols=25  Identities=16%  Similarity=0.159  Sum_probs=20.8

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCeec
Q psy16880         59 KQRTLISGGDDGSICMWNLNSKLCD   83 (84)
Q Consensus        59 ~~~~~~~~~~~~~i~~~~~~~~~~~   83 (84)
                      .+..+..++.|+.++-+|.++++.+
T Consensus       496 agglVF~Gt~dg~l~A~Da~TGe~L  520 (582)
T d1flga_         496 AGNLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cCCeEEEeCCCCeEEEEECCCCcEe
Confidence            4556778889999999999999865